WorldWideScience

Sample records for cumulus ensemble model

  1. Fluctuations in a quasi-stationary shallow cumulus cloud ensemble

    Directory of Open Access Journals (Sweden)

    M. Sakradzija

    2015-01-01

    Full Text Available We propose an approach to stochastic parameterisation of shallow cumulus clouds to represent the convective variability and its dependence on the model resolution. To collect information about the individual cloud lifecycles and the cloud ensemble as a whole, we employ a large eddy simulation (LES model and a cloud tracking algorithm, followed by conditional sampling of clouds at the cloud-base level. In the case of a shallow cumulus ensemble, the cloud-base mass flux distribution is bimodal, due to the different shallow cloud subtypes, active and passive clouds. Each distribution mode can be approximated using a Weibull distribution, which is a generalisation of exponential distribution by accounting for the change in distribution shape due to the diversity of cloud lifecycles. The exponential distribution of cloud mass flux previously suggested for deep convection parameterisation is a special case of the Weibull distribution, which opens a way towards unification of the statistical convective ensemble formalism of shallow and deep cumulus clouds. Based on the empirical and theoretical findings, a stochastic model has been developed to simulate a shallow convective cloud ensemble. It is formulated as a compound random process, with the number of convective elements drawn from a Poisson distribution, and the cloud mass flux sampled from a mixed Weibull distribution. Convective memory is accounted for through the explicit cloud lifecycles, making the model formulation consistent with the choice of the Weibull cloud mass flux distribution function. The memory of individual shallow clouds is required to capture the correct convective variability. The resulting distribution of the subgrid convective states in the considered shallow cumulus case is scale-adaptive – the smaller the grid size, the broader the distribution.

  2. Integrated cumulus ensemble and turbulence (ICET): An integrated parameterization system for general circulation models (GCMs)

    Energy Technology Data Exchange (ETDEWEB)

    Evans, J.L.; Frank, W.M.; Young, G.S. [Pennsylvania State Univ., University Park, PA (United States)

    1996-04-01

    Successful simulations of the global circulation and climate require accurate representation of the properties of shallow and deep convective clouds, stable-layer clouds, and the interactions between various cloud types, the boundary layer, and the radiative fluxes. Each of these phenomena play an important role in the global energy balance, and each must be parameterized in a global climate model. These processes are highly interactive. One major problem limiting the accuracy of parameterizations of clouds and other processes in general circulation models (GCMs) is that most of the parameterization packages are not linked with a common physical basis. Further, these schemes have not, in general, been rigorously verified against observations adequate to the task of resolving subgrid-scale effects. To address these problems, we are designing a new Integrated Cumulus Ensemble and Turbulence (ICET) parameterization scheme, installing it in a climate model (CCM2), and evaluating the performance of the new scheme using data from Atmospheric Radiation Measurement (ARM) Program Cloud and Radiation Testbed (CART) sites.

  3. The tropical water and energy cycles in a cumulus ensemble model. Part 1: Equilibrium climate

    Science.gov (United States)

    Sui, C. H.; Lau, K. M.; Tao, W. K.; Simpson, J.

    1994-01-01

    A cumulus ensemble model is used to study the tropical water and energy cycles and their role in the climate system. The model includes cloud dynamics, radiative processes, and microphysics that incorporate all important production and conversion processes among water vapor and five species of hydrometeors. Radiative transfer in clouds is parameterized based on cloud contents and size distributions of each bulk hydrometeor. Several model integrations have been carried out under a variety of imposed boundary and large-scale conditions. In Part 1 of this paper, the primary focus is on the water and heat budgets of the control experiment, which is designed to simulate the convective - radiative equilibrium response of the model to an imposed vertical velocity and a fixed sea surface temperature at 28 C. The simulated atmosphere is conditionally unstable below the freezing level and close to neutral above the freezing level. The equilibrium water budget shows that the total moisture source, M(sub s), which is contributed by surface evaporation (0.24 M(sub s)) and the large-scale advection (0.76 M(sub s)), all converts to mean surface precipitation bar-P(sub s). Most of M(sub s) is transported verticaly in convective regions where much of the condensate is generated and falls to surface (0.68 bar-P(sub s)). The remaining condensate detrains at a rate of 0.48 bar-P(sub s) and constitutes 65% of the source for stratiform clouds above the melting level. The upper-level stratiform cloud dissipates into clear environment at a rate of 0.14 bar-P(sub s), which is a significant moisture source comparable to the detrained water vapor (0.15 bar-P(sub s)) to the upper troposphere from convective clouds. In the lower troposphere, stratiform clouds evaporate at a rate of 0.41 bar-P(sub s), which is a more dominant moisture source than surface evaporation (0.22 bar-P(sub s)). The precipitation falling to the surface in the stratiform region is about 0.32 bar-P(sub s). The associated

  4. A Mass-Flux Scheme View of a High-Resolution Simulation of a Transition from Shallow to Deep Cumulus Convection.

    Science.gov (United States)

    Kuang, Zhiming; Bretherton, Christopher S.

    2006-07-01

    In this paper, an idealized, high-resolution simulation of a gradually forced transition from shallow, nonprecipitating to deep, precipitating cumulus convection is described; how the cloud and transport statistics evolve as the convection deepens is explored; and the collected statistics are used to evaluate assumptions in current cumulus schemes. The statistical analysis methodologies that are used do not require tracing the history of individual clouds or air parcels; instead they rely on probing the ensemble characteristics of cumulus convection in the large model dataset. They appear to be an attractive way for analyzing outputs from cloud-resolving numerical experiments. Throughout the simulation, it is found that 1) the initial thermodynamic properties of the updrafts at the cloud base have rather tight distributions; 2) contrary to the assumption made in many cumulus schemes, nearly undiluted air parcels are too infrequent to be relevant to any stage of the simulated convection; and 3) a simple model with a spectrum of entraining plumes appears to reproduce most features of the cloudy updrafts, but significantly overpredicts the mass flux as the updrafts approach their levels of zero buoyancy. A buoyancy-sorting model was suggested as a potential remedy. The organized circulations of cold pools seem to create clouds with larger-sized bases and may correspondingly contribute to their smaller lateral entrainment rates. Our results do not support a mass-flux closure based solely on convective available potential energy (CAPE), and are in general agreement with a convective inhibition (CIN)-based closure. The general similarity in the ensemble characteristics of shallow and deep convection and the continuous evolution of the thermodynamic structure during the transition provide justification for developing a single unified cumulus parameterization that encompasses both shallow and deep convection.

  5. PENGGUNAAN SKEMA KONVEKTIF MODEL CUACA WRF (BETTS MILLER JANJIC, KAIN FRITSCH DAN GRELL 3D ENSEMBLE (Studi kasus: Surabaya dan Jakarta

    Directory of Open Access Journals (Sweden)

    Roni Kurniawan

    2015-01-01

    Full Text Available Pada kajian ini dilakukan evaluasi penggunaan beberapa skema konvektif pada model WRF (Weather Research and Forecasting untuk prediksi cuaca di wilayah Indonesia. Terdapat tiga skema konvektif yang akan dievaluasi yaitu; skema konvektif cumulus BMJ (Betts Miller Janjic, KF (Kain Fritsch, dan GD (Grell 3D ensemble. Data yang digunakan untuk evaluasi adalah data curah hujan per 3 jam dan data angin per 12 jam (level ketinggian; permukaan, 850, 500, 250 mb dari hasil pengolahan model WRF dan observasi selama periode bulan Agustus 2011 dan Februari 2012 di stasiun Juanda-Surabaya dan Cengkareng-Jakarta. Hasil verifikasi dari tiga skema konvektif pada model WRF terhadap data observasi menunjukkan bahwa untuk prakiraan curah hujan, penggunaan skema konvektif BMJ lebih baik dari skema KF dan GD, dan untuk prakiraan arah dan kecepatan angin skema BMJ dan GD relatif lebih baik dari skema KF. Berdasarkan analisis hasil verifikasi yang diperoleh, pemilihan skema konvektif cumulus BMJ cenderung lebih baik dari skema konvektif KF dan GD untuk di aplikasikan pada model WRF.   In this study, the use of some convective schemes on the model WRF (Weather Research and Forecasting for weather prediction in Indonesian region has been evaluated. There are two models evaluated; BMJ cumulus convective scheme (Betts Miller Janjic, KF (Kain Fritsch, and GD (Grell 3D ensemble. The data used in the evaluation are the 3 hourly rainfall data, and the 12 hourly wind data (level height; surface, 850, 500, 250mb from the WRF models and observation processing during August 2011 and February 2012 period at the Juanda-Surabaya and Cengkareng-Jakarta stations. The results of the verification of the three convective schemes in WRF models against observation data indicate that for precipitation forecasts, the application of the BMJ convective scheme is better than the KF and GD schemes, and for direction and wind speed forecast, BMJ and GD schemes is relatively better than the KF

  6. Shallow cumuli ensemble statistics for development of a stochastic parameterization

    Science.gov (United States)

    Sakradzija, Mirjana; Seifert, Axel; Heus, Thijs

    2014-05-01

    According to a conventional deterministic approach to the parameterization of moist convection in numerical atmospheric models, a given large scale forcing produces an unique response from the unresolved convective processes. This representation leaves out the small-scale variability of convection, as it is known from the empirical studies of deep and shallow convective cloud ensembles, there is a whole distribution of sub-grid states corresponding to the given large scale forcing. Moreover, this distribution gets broader with the increasing model resolution. This behavior is also consistent with our theoretical understanding of a coarse-grained nonlinear system. We propose an approach to represent the variability of the unresolved shallow-convective states, including the dependence of the sub-grid states distribution spread and shape on the model horizontal resolution. Starting from the Gibbs canonical ensemble theory, Craig and Cohen (2006) developed a theory for the fluctuations in a deep convective ensemble. The micro-states of a deep convective cloud ensemble are characterized by the cloud-base mass flux, which, according to the theory, is exponentially distributed (Boltzmann distribution). Following their work, we study the shallow cumulus ensemble statistics and the distribution of the cloud-base mass flux. We employ a Large-Eddy Simulation model (LES) and a cloud tracking algorithm, followed by a conditional sampling of clouds at the cloud base level, to retrieve the information about the individual cloud life cycles and the cloud ensemble as a whole. In the case of shallow cumulus cloud ensemble, the distribution of micro-states is a generalized exponential distribution. Based on the empirical and theoretical findings, a stochastic model has been developed to simulate the shallow convective cloud ensemble and to test the convective ensemble theory. Stochastic model simulates a compound random process, with the number of convective elements drawn from a

  7. Mechanisms and Model Diversity of Trade-Wind Shallow Cumulus Cloud Feedbacks: A Review

    Science.gov (United States)

    Vial, Jessica; Bony, Sandrine; Stevens, Bjorn; Vogel, Raphaela

    2017-11-01

    Shallow cumulus clouds in the trade-wind regions are at the heart of the long standing uncertainty in climate sensitivity estimates. In current climate models, cloud feedbacks are strongly influenced by cloud-base cloud amount in the trades. Therefore, understanding the key factors controlling cloudiness near cloud-base in shallow convective regimes has emerged as an important topic of investigation. We review physical understanding of these key controlling factors and discuss the value of the different approaches that have been developed so far, based on global and high-resolution model experimentations and process-oriented analyses across a range of models and for observations. The trade-wind cloud feedbacks appear to depend on two important aspects: (1) how cloudiness near cloud-base is controlled by the local interplay between turbulent, convective and radiative processes; (2) how these processes interact with their surrounding environment and are influenced by mesoscale organization. Our synthesis of studies that have explored these aspects suggests that the large diversity of model responses is related to fundamental differences in how the processes controlling trade cumulus operate in models, notably, whether they are parameterized or resolved. In models with parameterized convection, cloudiness near cloud-base is very sensitive to the vigor of convective mixing in response to changes in environmental conditions. This is in contrast with results from high-resolution models, which suggest that cloudiness near cloud-base is nearly invariant with warming and independent of large-scale environmental changes. Uncertainties are difficult to narrow using current observations, as the trade cumulus variability and its relation to large-scale environmental factors strongly depend on the time and/or spatial scales at which the mechanisms are evaluated. New opportunities for testing physical understanding of the factors controlling shallow cumulus cloud responses using

  8. Mechanisms and Model Diversity of Trade-Wind Shallow Cumulus Cloud Feedbacks: A Review

    Science.gov (United States)

    Vial, Jessica; Bony, Sandrine; Stevens, Bjorn; Vogel, Raphaela

    Shallow cumulus clouds in the trade-wind regions are at the heart of the long standing uncertainty in climate sensitivity estimates. In current climate models, cloud feedbacks are strongly influenced by cloud-base cloud amount in the trades. Therefore, understanding the key factors controlling cloudiness near cloud-base in shallow convective regimes has emerged as an important topic of investigation. We review physical understanding of these key controlling factors and discuss the value of the different approaches that have been developed so far, based on global and high-resolution model experimentations and process-oriented analyses across a range of models and for observations. The trade-wind cloud feedbacks appear to depend on two important aspects: (1) how cloudiness near cloud-base is controlled by the local interplay between turbulent, convective and radiative processes; (2) how these processes interact with their surrounding environment and are influenced by mesoscale organization. Our synthesis of studies that have explored these aspects suggests that the large diversity of model responses is related to fundamental differences in how the processes controlling trade cumulus operate in models, notably, whether they are parameterized or resolved. In models with parameterized convection, cloudiness near cloud-base is very sensitive to the vigor of convective mixing in response to changes in environmental conditions. This is in contrast with results from high-resolution models, which suggest that cloudiness near cloud-base is nearly invariant with warming and independent of large-scale environmental changes. Uncertainties are difficult to narrow using current observations, as the trade cumulus variability and its relation to large-scale environmental factors strongly depend on the time and/or spatial scales at which the mechanisms are evaluated. New opportunities for testing physical understanding of the factors controlling shallow cumulus cloud responses using

  9. The beneficial effects of cumulus cells and oocyte-cumulus cell gap junctions depends on oocyte maturation and fertilization methods in mice

    Directory of Open Access Journals (Sweden)

    Cheng-Jie Zhou

    2016-03-01

    Full Text Available Cumulus cells are a group of closely associated granulosa cells that surround and nourish oocytes. Previous studies have shown that cumulus cells contribute to oocyte maturation and fertilization through gap junction communication. However, it is not known how this gap junction signaling affects in vivo versus in vitro maturation of oocytes, and their subsequent fertilization and embryonic development following insemination. Therefore, in our study, we performed mouse oocyte maturation and insemination using in vivo- or in vitro-matured oocyte-cumulus complexes (OCCs, which retain gap junctions between the cumulus cells and the oocytes, in vitro-matured, denuded oocytes co-cultured with cumulus cells (DCs, which lack gap junctions between the cumulus cells and the oocytes, and in vitro-matured, denuded oocytes without cumulus cells (DOs. Using these models, we were able to analyze the effects of gap junction signaling on oocyte maturation, fertilization, and early embryo development. We found that gap junctions were necessary for both in vivo and in vitro oocyte maturation. In addition, for oocytes matured in vivo, the presence of cumulus cells during insemination improved fertilization and blastocyst formation, and this improvement was strengthened by gap junctions. Moreover, for oocytes matured in vitro, the presence of cumulus cells during insemination improved fertilization, but not blastocyst formation, and this improvement was independent of gap junctions. Our results demonstrate, for the first time, that the beneficial effect of gap junction signaling from cumulus cells depends on oocyte maturation and fertilization methods.

  10. Impact of Representing Model Error in a Hybrid Ensemble-Variational Data Assimilation System for Track Forecast of Tropical Cyclones over the Bay of Bengal

    Science.gov (United States)

    Kutty, Govindan; Muraleedharan, Rohit; Kesarkar, Amit P.

    2018-03-01

    Uncertainties in the numerical weather prediction models are generally not well-represented in ensemble-based data assimilation (DA) systems. The performance of an ensemble-based DA system becomes suboptimal, if the sources of error are undersampled in the forecast system. The present study examines the effect of accounting for model error treatments in the hybrid ensemble transform Kalman filter—three-dimensional variational (3DVAR) DA system (hybrid) in the track forecast of two tropical cyclones viz. Hudhud and Thane, formed over the Bay of Bengal, using Advanced Research Weather Research and Forecasting (ARW-WRF) model. We investigated the effect of two types of model error treatment schemes and their combination on the hybrid DA system; (i) multiphysics approach, which uses different combination of cumulus, microphysics and planetary boundary layer schemes, (ii) stochastic kinetic energy backscatter (SKEB) scheme, which perturbs the horizontal wind and potential temperature tendencies, (iii) a combination of both multiphysics and SKEB scheme. Substantial improvements are noticed in the track positions of both the cyclones, when flow-dependent ensemble covariance is used in 3DVAR framework. Explicit model error representation is found to be beneficial in treating the underdispersive ensembles. Among the model error schemes used in this study, a combination of multiphysics and SKEB schemes has outperformed the other two schemes with improved track forecast for both the tropical cyclones.

  11. The Effect of Cumulus Cloud Field Anisotropy on Domain-Averaged Solar Fluxes and Atmospheric Heating Rates

    Science.gov (United States)

    Hinkelman, Laura M.; Evans, K. Franklin; Clothiaux, Eugene E.; Ackerman, Thomas P.; Stackhouse, Paul W., Jr.

    2006-01-01

    Cumulus clouds can become tilted or elongated in the presence of wind shear. Nevertheless, most studies of the interaction of cumulus clouds and radiation have assumed these clouds to be isotropic. This paper describes an investigation of the effect of fair-weather cumulus cloud field anisotropy on domain-averaged solar fluxes and atmospheric heating rate profiles. A stochastic field generation algorithm was used to produce twenty three-dimensional liquid water content fields based on the statistical properties of cloud scenes from a large eddy simulation. Progressively greater degrees of x-z plane tilting and horizontal stretching were imposed on each of these scenes, so that an ensemble of scenes was produced for each level of distortion. The resulting scenes were used as input to a three-dimensional Monte Carlo radiative transfer model. Domain-average transmission, reflection, and absorption of broadband solar radiation were computed for each scene along with the average heating rate profile. Both tilt and horizontal stretching were found to significantly affect calculated fluxes, with the amount and sign of flux differences depending strongly on sun position relative to cloud distortion geometry. The mechanisms by which anisotropy interacts with solar fluxes were investigated by comparisons to independent pixel approximation and tilted independent pixel approximation computations for the same scenes. Cumulus anisotropy was found to most strongly impact solar radiative transfer by changing the effective cloud fraction, i.e., the cloud fraction when the field is projected on a surface perpendicular to the direction of the incident solar beam.

  12. Cumulus-specific genes are transcriptionally silent following somatic cell nuclear transfer in a mouse model*

    OpenAIRE

    Tong, Guo-qing; Heng, Boon-chin; Ng, Soon-chye

    2007-01-01

    This study investigated whether four cumulus-specific genes: follicular stimulating hormone receptor (FSHr), hyaluronan synthase 2 (Has2), prostaglandin synthase 2 (Ptgs2) and steroidogenic acute regulator protein (Star), were correctly reprogrammed to be transcriptionally silent following somatic cell nuclear transfer (SCNT) in a murine model. Cumulus cells of C57×CBA F1 female mouse were injected into enucleated oocytes, followed by activation in 10 µmol/L strontium chloride for 5 h and sub...

  13. Multi-Model Ensemble Wake Vortex Prediction

    Science.gov (United States)

    Koerner, Stephan; Holzaepfel, Frank; Ahmad, Nash'at N.

    2015-01-01

    Several multi-model ensemble methods are investigated for predicting wake vortex transport and decay. This study is a joint effort between National Aeronautics and Space Administration and Deutsches Zentrum fuer Luft- und Raumfahrt to develop a multi-model ensemble capability using their wake models. An overview of different multi-model ensemble methods and their feasibility for wake applications is presented. The methods include Reliability Ensemble Averaging, Bayesian Model Averaging, and Monte Carlo Simulations. The methodologies are evaluated using data from wake vortex field experiments.

  14. Effect of land model ensemble versus coupled model ensemble on the simulation of precipitation climatology and variability

    Science.gov (United States)

    Wei, Jiangfeng; Dirmeyer, Paul A.; Yang, Zong-Liang; Chen, Haishan

    2017-10-01

    Through a series of model simulations with an atmospheric general circulation model coupled to three different land surface models, this study investigates the impacts of land model ensembles and coupled model ensemble on precipitation simulation. It is found that coupling an ensemble of land models to an atmospheric model has a very minor impact on the improvement of precipitation climatology and variability, but a simple ensemble average of the precipitation from three individually coupled land-atmosphere models produces better results, especially for precipitation variability. The generally weak impact of land processes on precipitation should be the main reason that the land model ensembles do not improve precipitation simulation. However, if there are big biases in the land surface model or land surface data set, correcting them could improve the simulated climate, especially for well-constrained regional climate simulations.

  15. Advanced Atmospheric Ensemble Modeling Techniques

    Energy Technology Data Exchange (ETDEWEB)

    Buckley, R. [Savannah River Site (SRS), Aiken, SC (United States). Savannah River National Lab. (SRNL); Chiswell, S. [Savannah River Site (SRS), Aiken, SC (United States). Savannah River National Lab. (SRNL); Kurzeja, R. [Savannah River Site (SRS), Aiken, SC (United States). Savannah River National Lab. (SRNL); Maze, G. [Savannah River Site (SRS), Aiken, SC (United States). Savannah River National Lab. (SRNL); Viner, B. [Savannah River Site (SRS), Aiken, SC (United States). Savannah River National Lab. (SRNL); Werth, D. [Savannah River Site (SRS), Aiken, SC (United States). Savannah River National Lab. (SRNL)

    2017-09-29

    Ensemble modeling (EM), the creation of multiple atmospheric simulations for a given time period, has become an essential tool for characterizing uncertainties in model predictions. We explore two novel ensemble modeling techniques: (1) perturbation of model parameters (Adaptive Programming, AP), and (2) data assimilation (Ensemble Kalman Filter, EnKF). The current research is an extension to work from last year and examines transport on a small spatial scale (<100 km) in complex terrain, for more rigorous testing of the ensemble technique. Two different release cases were studied, a coastal release (SF6) and an inland release (Freon) which consisted of two release times. Observations of tracer concentration and meteorology are used to judge the ensemble results. In addition, adaptive grid techniques have been developed to reduce required computing resources for transport calculations. Using a 20- member ensemble, the standard approach generated downwind transport that was quantitatively good for both releases; however, the EnKF method produced additional improvement for the coastal release where the spatial and temporal differences due to interior valley heating lead to the inland movement of the plume. The AP technique showed improvements for both release cases, with more improvement shown in the inland release. This research demonstrated that transport accuracy can be improved when models are adapted to a particular location/time or when important local data is assimilated into the simulation and enhances SRNL’s capability in atmospheric transport modeling in support of its current customer base and local site missions, as well as our ability to attract new customers within the intelligence community.

  16. A Heuristic Parameterization for the Integrated Vertical Overlap of Cumulus and Stratus

    Science.gov (United States)

    Park, Sungsu

    2017-10-01

    The author developed a heuristic parameterization to handle the contrasting vertical overlap structures of cumulus and stratus in an integrated way. The parameterization assumes that cumulus is maximum-randomly overlapped with adjacent cumulus; stratus is maximum-randomly overlapped with adjacent stratus; and radiation and precipitation areas at each model interface are grouped into four categories, that is, convective, stratiform, mixed, and clear areas. For simplicity, thermodynamic scalars within individual portions of cloud, radiation, and precipitation areas are assumed to be internally homogeneous. The parameterization was implemented into the Seoul National University Atmosphere Model version 0 (SAM0) in an offline mode and tested over the globe. The offline control simulation reasonably reproduces the online surface precipitation flux and longwave cloud radiative forcing (LWCF). Although the cumulus fraction is much smaller than the stratus fraction, cumulus dominantly contributes to precipitation production in the tropics. For radiation, however, stratus is dominant. Compared with the maximum overlap, the random overlap of stratus produces stronger LWCF and, surprisingly, more precipitation flux due to less evaporation of convective precipitation. Compared with the maximum overlap, the random overlap of cumulus simulates stronger LWCF and weaker precipitation flux. Compared with the control simulation with separate cumulus and stratus, the simulation with a single-merged cloud substantially enhances the LWCF in the tropical deep convection and midlatitude storm track regions. The process-splitting treatment of convective and stratiform precipitation with an independent precipitation approximation (IPA) simulates weaker surface precipitation flux than the control simulation in the tropical region.

  17. Cumulus convection and the terrestrial water-vapor distribution

    Science.gov (United States)

    Donner, Leo J.

    1988-01-01

    Cumulus convection plays a significant role in determining the structure of the terrestrial water vapor field. Cumulus convection acts directly on the moisture field by condensing and precipitating water vapor and by redistributing water vapor through cumulus induced eddy circulations. The mechanisms by which cumulus convection influences the terrestrial water vapor distribution is outlined. Calculations using a theory due to Kuo is used to illustrate the mechanisms by which cumulus convection works. Understanding of these processes greatly aids the ability of researchers to interpret the seasonal and spatial distribution of atmospheric water vapor by providing information on the nature of sources and sinks and the global circulation.

  18. Reproducing multi-model ensemble average with Ensemble-averaged Reconstructed Forcings (ERF) in regional climate modeling

    Science.gov (United States)

    Erfanian, A.; Fomenko, L.; Wang, G.

    2016-12-01

    Multi-model ensemble (MME) average is considered the most reliable for simulating both present-day and future climates. It has been a primary reference for making conclusions in major coordinated studies i.e. IPCC Assessment Reports and CORDEX. The biases of individual models cancel out each other in MME average, enabling the ensemble mean to outperform individual members in simulating the mean climate. This enhancement however comes with tremendous computational cost, which is especially inhibiting for regional climate modeling as model uncertainties can originate from both RCMs and the driving GCMs. Here we propose the Ensemble-based Reconstructed Forcings (ERF) approach to regional climate modeling that achieves a similar level of bias reduction at a fraction of cost compared with the conventional MME approach. The new method constructs a single set of initial and boundary conditions (IBCs) by averaging the IBCs of multiple GCMs, and drives the RCM with this ensemble average of IBCs to conduct a single run. Using a regional climate model (RegCM4.3.4-CLM4.5), we tested the method over West Africa for multiple combination of (up to six) GCMs. Our results indicate that the performance of the ERF method is comparable to that of the MME average in simulating the mean climate. The bias reduction seen in ERF simulations is achieved by using more realistic IBCs in solving the system of equations underlying the RCM physics and dynamics. This endows the new method with a theoretical advantage in addition to reducing computational cost. The ERF output is an unaltered solution of the RCM as opposed to a climate state that might not be physically plausible due to the averaging of multiple solutions with the conventional MME approach. The ERF approach should be considered for use in major international efforts such as CORDEX. Key words: Multi-model ensemble, ensemble analysis, ERF, regional climate modeling

  19. RACORO Continental Boundary Layer Cloud Investigations: 3. Separation of Parameterization Biases in Single-Column Model CAM5 Simulations of Shallow Cumulus

    Science.gov (United States)

    Lin, Wuyin; Liu, Yangang; Vogelmann, Andrew M.; Fridlind, Ann; Endo, Satoshi; Song, Hua; Feng, Sha; Toto, Tami; Li, Zhijin; Zhang, Minghua

    2015-01-01

    Climatically important low-level clouds are commonly misrepresented in climate models. The FAst-physics System TEstbed and Research (FASTER) Project has constructed case studies from the Atmospheric Radiation Measurement Climate Research Facility's Southern Great Plain site during the RACORO aircraft campaign to facilitate research on model representation of boundary-layer clouds. This paper focuses on using the single-column Community Atmosphere Model version 5 (SCAM5) simulations of a multi-day continental shallow cumulus case to identify specific parameterization causes of low-cloud biases. Consistent model biases among the simulations driven by a set of alternative forcings suggest that uncertainty in the forcing plays only a relatively minor role. In-depth analysis reveals that the model's shallow cumulus convection scheme tends to significantly under-produce clouds during the times when shallow cumuli exist in the observations, while the deep convective and stratiform cloud schemes significantly over-produce low-level clouds throughout the day. The links between model biases and the underlying assumptions of the shallow cumulus scheme are further diagnosed with the aid of large-eddy simulations and aircraft measurements, and by suppressing the triggering of the deep convection scheme. It is found that the weak boundary layer turbulence simulated is directly responsible for the weak cumulus activity and the simulated boundary layer stratiform clouds. Increased vertical and temporal resolutions are shown to lead to stronger boundary layer turbulence and reduction of low-cloud biases.

  20. Modeling Dynamic Systems with Efficient Ensembles of Process-Based Models.

    Directory of Open Access Journals (Sweden)

    Nikola Simidjievski

    Full Text Available Ensembles are a well established machine learning paradigm, leading to accurate and robust models, predominantly applied to predictive modeling tasks. Ensemble models comprise a finite set of diverse predictive models whose combined output is expected to yield an improved predictive performance as compared to an individual model. In this paper, we propose a new method for learning ensembles of process-based models of dynamic systems. The process-based modeling paradigm employs domain-specific knowledge to automatically learn models of dynamic systems from time-series observational data. Previous work has shown that ensembles based on sampling observational data (i.e., bagging and boosting, significantly improve predictive performance of process-based models. However, this improvement comes at the cost of a substantial increase of the computational time needed for learning. To address this problem, the paper proposes a method that aims at efficiently learning ensembles of process-based models, while maintaining their accurate long-term predictive performance. This is achieved by constructing ensembles with sampling domain-specific knowledge instead of sampling data. We apply the proposed method to and evaluate its performance on a set of problems of automated predictive modeling in three lake ecosystems using a library of process-based knowledge for modeling population dynamics. The experimental results identify the optimal design decisions regarding the learning algorithm. The results also show that the proposed ensembles yield significantly more accurate predictions of population dynamics as compared to individual process-based models. Finally, while their predictive performance is comparable to the one of ensembles obtained with the state-of-the-art methods of bagging and boosting, they are substantially more efficient.

  1. Bovine cumulus-oocyte disconnection in vitro

    DEFF Research Database (Denmark)

    Maddox-Hyttel, Poul

    1987-01-01

    Cumulus-oocyte complexes were obtained from cows by aspiration of small (1-6 mm in diameter) antral follicles after slaughter. Complexes with a compact multilayered cumulus investment were cultured and processed for transmission electron microscopy after different periods of culture including a 0...

  2. Improvement and implementation of a parameterization for shallow cumulus in the global climate model ECHAM5-HAM

    Science.gov (United States)

    Isotta, Francesco; Spichtinger, Peter; Lohmann, Ulrike; von Salzen, Knut

    2010-05-01

    Convection is a crucial component of weather and climate. Its parameterization in General Circulation Models (GCMs) is one of the largest sources of uncertainty. Convection redistributes moisture and heat, affects the radiation budget and transports tracers from the PBL to higher levels. Shallow convection is very common over the globe, in particular over the oceans in the trade wind regions. A recently developed shallow convection scheme by von Salzen and McFarlane (2002) is implemented in the ECHAM5-HAM GCM instead of the standard convection scheme by Tiedtke (1989). The scheme of von Salzen and McFarlane (2002) is a bulk parameterization for an ensemble of transient shallow cumuli. A life cycle is considered, as well as inhomogeneities in the horizontal distribution of in-cloud properties due to mixing. The shallow convection scheme is further developed to take the ice phase and precipitation in form of rain and snow into account. The double moment microphysics scheme for cloud droplets and ice crystals implemented is consistent with the stratiform scheme and with the other types of convective clouds. The ice phase permits to alter the criterion to distinguish between shallow convection and the other two types of convection, namely deep and mid-level, which are still calculated by the Tiedtke (1989) scheme. The lunching layer of the test parcel in the shallow convection scheme is chosen as the one with maximum moist static energy in the three lowest levels. The latter is modified to the ``frozen moist static energy'' to account for the ice phase. Moreover, tracers (e.g. aerosols) are transported in the updraft and scavenged in and below clouds. As a first test of the performance of the new scheme and the interaction with the rest of the model, the Barbados Oceanographic and Meteorological EXperiment (BOMEX) and the Rain In Cumulus over the Ocean experiment (RICO) case are simulated with the single column model (SCM) and the results are compared with large eddy

  3. Visualizing Cumulus Clouds in Virtual Reality

    NARCIS (Netherlands)

    Griffith, E.J.

    2010-01-01

    This thesis focuses on interactively visualizing, and ultimately simulating, cumulus clouds both in virtual reality (VR) and with a standard desktop computer. The cumulus clouds in question are found in data sets generated by Large-Eddy Simulations (LES), which are used to simulate a small section

  4. Simulation of solar radiative transfer in cumulus clouds

    Energy Technology Data Exchange (ETDEWEB)

    Zuev, V.E.; Titov, G.A. [Institute of Atmospheric Optics, Tomsk (Russian Federation)

    1996-04-01

    This work presents a 3-D model of radiative transfer which is used to study the relationship between the spatial distribution of cumulus clouds and fluxes (albedo and transmittance) of visible solar radiation.

  5. Reliability of multi-model and structurally different single-model ensembles

    Energy Technology Data Exchange (ETDEWEB)

    Yokohata, Tokuta [National Institute for Environmental Studies, Center for Global Environmental Research, Tsukuba, Ibaraki (Japan); Annan, James D.; Hargreaves, Julia C. [Japan Agency for Marine-Earth Science and Technology, Research Institute for Global Change, Yokohama, Kanagawa (Japan); Collins, Matthew [University of Exeter, College of Engineering, Mathematics and Physical Sciences, Exeter (United Kingdom); Jackson, Charles S.; Tobis, Michael [The University of Texas at Austin, Institute of Geophysics, 10100 Burnet Rd., ROC-196, Mail Code R2200, Austin, TX (United States); Webb, Mark J. [Met Office Hadley Centre, Exeter (United Kingdom)

    2012-08-15

    The performance of several state-of-the-art climate model ensembles, including two multi-model ensembles (MMEs) and four structurally different (perturbed parameter) single model ensembles (SMEs), are investigated for the first time using the rank histogram approach. In this method, the reliability of a model ensemble is evaluated from the point of view of whether the observations can be regarded as being sampled from the ensemble. Our analysis reveals that, in the MMEs, the climate variables we investigated are broadly reliable on the global scale, with a tendency towards overdispersion. On the other hand, in the SMEs, the reliability differs depending on the ensemble and variable field considered. In general, the mean state and historical trend of surface air temperature, and mean state of precipitation are reliable in the SMEs. However, variables such as sea level pressure or top-of-atmosphere clear-sky shortwave radiation do not cover a sufficiently wide range in some. It is not possible to assess whether this is a fundamental feature of SMEs generated with particular model, or a consequence of the algorithm used to select and perturb the values of the parameters. As under-dispersion is a potentially more serious issue when using ensembles to make projections, we recommend the application of rank histograms to assess reliability when designing and running perturbed physics SMEs. (orig.)

  6. Mesoscale modeling of smoke transport from equatorial Southeast Asian Maritime Continent to the Philippines: First comparison of ensemble analysis with in situ observations

    Science.gov (United States)

    Ge, Cui; Wang, Jun; Reid, Jeffrey S.; Posselt, Derek J.; Xian, Peng; Hyer, Edward

    2017-05-01

    Atmospheric transport of smoke from equatorial Southeast Asian Maritime Continent (Indonesia, Singapore, and Malaysia) to the Philippines was recently verified by the first-ever measurement of aerosol composition in the region of the Sulu Sea from a research vessel named Vasco. However, numerical modeling of such transport can have large uncertainties due to the lack of observations for parameterization schemes and for describing fire emission and meteorology in this region. These uncertainties are analyzed here, for the first time, with an ensemble of 24 Weather Research and Forecasting model with Chemistry (WRF-Chem) simulations. The ensemble reproduces the time series of observed surface nonsea-salt PM2.5 concentrations observed from the Vasco vessel during 17-30 September 2011 and overall agrees with satellite (Cloud-Aerosol Lidar and Infrared Pathfinder Satellite Observation (CALIPSO) and Moderate Resolution Imaging Spectroradiometer (MODIS)) and Aerosol Robotic Network (AERONET) data. The difference of meteorology between National Centers for Environmental Prediction (NCEP's) Final (FNL) and European Center for Medium range Weather Forecasting (ECMWF's) ERA renders the biggest spread in the ensemble (up to 20 μg m-3 or 200% in surface PM2.5), with FNL showing systematically superior results. The second biggest uncertainty is from fire emissions; the 2 day maximum Fire Locating and Modelling of Burning Emissions (FLAMBE) emission is superior than the instantaneous one. While Grell-Devenyi (G3) and Betts-Miller-Janjić cumulus schemes only produce a difference of 3 μg m-3 of surface PM2.5 over the Sulu Sea, the ensemble mean agrees best with Climate Prediction Center (CPC) MORPHing (CMORPH)'s spatial distribution of precipitation. Simulation with FNL-G3, 2 day maximum FLAMBE, and 800 m injection height outperforms other ensemble members. Finally, the global transport model (Navy Aerosol Analysis and Prediction System (NAAPS)) outperforms all WRF

  7. Role of cumulus cells during vitrification and fertilization of mature bovine oocytes

    NARCIS (Netherlands)

    Ortiz-Escribano, N.; Smits, K.; Piepers, S.; Abbeel, Van den E.; Woelders, H.; Soom, Van A.

    2016-01-01

    This study was designed to determine the role of cumulus cells during vitrification of bovine oocytes. Mature cumulus-oocyte complexes (COCs) with many layers of cumulus cells, corona radiata oocytes (CRs), with a few layers of cumulus cells, and denuded oocytes (DOs) without cumulus cells were

  8. Three-model ensemble wind prediction in southern Italy

    Science.gov (United States)

    Torcasio, Rosa Claudia; Federico, Stefano; Calidonna, Claudia Roberta; Avolio, Elenio; Drofa, Oxana; Landi, Tony Christian; Malguzzi, Piero; Buzzi, Andrea; Bonasoni, Paolo

    2016-03-01

    Quality of wind prediction is of great importance since a good wind forecast allows the prediction of available wind power, improving the penetration of renewable energies into the energy market. Here, a 1-year (1 December 2012 to 30 November 2013) three-model ensemble (TME) experiment for wind prediction is considered. The models employed, run operationally at National Research Council - Institute of Atmospheric Sciences and Climate (CNR-ISAC), are RAMS (Regional Atmospheric Modelling System), BOLAM (BOlogna Limited Area Model), and MOLOCH (MOdello LOCale in H coordinates). The area considered for the study is southern Italy and the measurements used for the forecast verification are those of the GTS (Global Telecommunication System). Comparison with observations is made every 3 h up to 48 h of forecast lead time. Results show that the three-model ensemble outperforms the forecast of each individual model. The RMSE improvement compared to the best model is between 22 and 30 %, depending on the season. It is also shown that the three-model ensemble outperforms the IFS (Integrated Forecasting System) of the ECMWF (European Centre for Medium-Range Weather Forecast) for the surface wind forecasts. Notably, the three-model ensemble forecast performs better than each unbiased model, showing the added value of the ensemble technique. Finally, the sensitivity of the three-model ensemble RMSE to the length of the training period is analysed.

  9. Spectral cumulus parameterization based on cloud-resolving model

    Science.gov (United States)

    Baba, Yuya

    2018-02-01

    We have developed a spectral cumulus parameterization using a cloud-resolving model. This includes a new parameterization of the entrainment rate which was derived from analysis of the cloud properties obtained from the cloud-resolving model simulation and was valid for both shallow and deep convection. The new scheme was examined in a single-column model experiment and compared with the existing parameterization of Gregory (2001, Q J R Meteorol Soc 127:53-72) (GR scheme). The results showed that the GR scheme simulated more shallow and diluted convection than the new scheme. To further validate the physical performance of the parameterizations, Atmospheric Model Intercomparison Project (AMIP) experiments were performed, and the results were compared with reanalysis data. The new scheme performed better than the GR scheme in terms of mean state and variability of atmospheric circulation, i.e., the new scheme improved positive bias of precipitation in western Pacific region, and improved positive bias of outgoing shortwave radiation over the ocean. The new scheme also simulated better features of convectively coupled equatorial waves and Madden-Julian oscillation. These improvements were found to be derived from the modification of parameterization for the entrainment rate, i.e., the proposed parameterization suppressed excessive increase of entrainment, thus suppressing excessive increase of low-level clouds.

  10. Stratocumulus to Cumulus Transition by Drizzle

    Science.gov (United States)

    Yamaguchi, Takanobu; Feingold, Graham; Kazil, Jan

    2017-10-01

    The stratocumulus to cumulus transition (SCT) is typically considered to be a slow, multiday process, caused primarily by dry air entrainment associated with overshooting cumulus, with minor influence of drizzle. This study revisits the role of drizzle in the SCT with large eddy simulations coupled with a two-moment bulk microphysics scheme that includes a budget on aerosol (Na) and cloud droplet number concentrations (Nc). We show a strong precipitation-induced modulation of the SCT by drizzle initiated in penetrative cumulus under stratocumulus. Lagrangian SCT simulations are initiated with various, moderate Na (100-250 cm-3), which produce little to no drizzle from the stratocumulus. As expected, drizzle formation in cumuli is regulated by cloud depth and Nc, with stronger dependence on cloud depth, so that, for the current case, drizzle is generated in all simulations once cumulus clouds become sufficiently deep. The drizzle generated in the cumuli washes out stratocumulus cloud water and much of the aerosol, and a cumulus state appears for approximately 10 h. With additional simulations with a fixed Nc (100 cm-3), we show that prediction of Nc is necessary for this fast SCT since it is a result of a positive feedback of collision-coalescence-induced aerosol depletion that enhances drizzle formation. A fixed Nc does not permit this feedback, and thus results in weak influence of drizzle on the SCT. Simulations with fixed droplet concentrations that bracket the time varying aerosol/drop concentrations are therefore not representative of the role of drizzle in the SCT.

  11. Gridded Calibration of Ensemble Wind Vector Forecasts Using Ensemble Model Output Statistics

    Science.gov (United States)

    Lazarus, S. M.; Holman, B. P.; Splitt, M. E.

    2017-12-01

    A computationally efficient method is developed that performs gridded post processing of ensemble wind vector forecasts. An expansive set of idealized WRF model simulations are generated to provide physically consistent high resolution winds over a coastal domain characterized by an intricate land / water mask. Ensemble model output statistics (EMOS) is used to calibrate the ensemble wind vector forecasts at observation locations. The local EMOS predictive parameters (mean and variance) are then spread throughout the grid utilizing flow-dependent statistical relationships extracted from the downscaled WRF winds. Using data withdrawal and 28 east central Florida stations, the method is applied to one year of 24 h wind forecasts from the Global Ensemble Forecast System (GEFS). Compared to the raw GEFS, the approach improves both the deterministic and probabilistic forecast skill. Analysis of multivariate rank histograms indicate the post processed forecasts are calibrated. Two downscaling case studies are presented, a quiescent easterly flow event and a frontal passage. Strengths and weaknesses of the approach are presented and discussed.

  12. Ensemble inequivalence: Landau theory and the ABC model

    International Nuclear Information System (INIS)

    Cohen, O; Mukamel, D

    2012-01-01

    It is well known that systems with long-range interactions may exhibit different phase diagrams when studied within two different ensembles. In many of the previously studied examples of ensemble inequivalence, the phase diagrams differ only when the transition in one of the ensembles is first order. By contrast, in a recent study of a generalized ABC model, the canonical and grand-canonical ensembles of the model were shown to differ even when they both exhibit a continuous transition. Here we show that the order of the transition where ensemble inequivalence may occur is related to the symmetry properties of the order parameter associated with the transition. This is done by analyzing the Landau expansion of a generic model with long-range interactions. The conclusions drawn from the generic analysis are demonstrated for the ABC model by explicit calculation of its Landau expansion. (paper)

  13. Multi-ensemble regional simulation of Indian monsoon during contrasting rainfall years: role of convective schemes and nested domain

    Science.gov (United States)

    Devanand, Anjana; Ghosh, Subimal; Paul, Supantha; Karmakar, Subhankar; Niyogi, Dev

    2018-06-01

    Regional simulations of the seasonal Indian summer monsoon rainfall (ISMR) require an understanding of the model sensitivities to physics and resolution, and its effect on the model uncertainties. It is also important to quantify the added value in the simulated sub-regional precipitation characteristics by a regional climate model (RCM), when compared to coarse resolution rainfall products. This study presents regional model simulations of ISMR at seasonal scale using the Weather Research and Forecasting (WRF) model with the synoptic scale forcing from ERA-interim reanalysis, for three contrasting monsoon seasons, 1994 (excess), 2002 (deficit) and 2010 (normal). Impact of four cumulus schemes, viz., Kain-Fritsch (KF), Betts-Janjić-Miller, Grell 3D and modified Kain-Fritsch (KFm), and two micro physical parameterization schemes, viz., WRF Single Moment Class 5 scheme and Lin et al. scheme (LIN), with eight different possible combinations are analyzed. The impact of spectral nudging on model sensitivity is also studied. In WRF simulations using spectral nudging, improvement in model rainfall appears to be consistent in regions with topographic variability such as Central Northeast and Konkan Western Ghat sub-regions. However the results are also dependent on choice of cumulus scheme used, with KF and KFm providing relatively good performance and the eight member ensemble mean showing better results for these sub-regions. There is no consistent improvement noted in Northeast and Peninsular Indian monsoon regions. Results indicate that the regional simulations using nested domains can provide some improvements on ISMR simulations. Spectral nudging is found to improve upon the model simulations in terms of reducing the intra ensemble spread and hence the uncertainty in the model simulated precipitation. The results provide important insights regarding the need for further improvements in the regional climate simulations of ISMR for various sub-regions and contribute

  14. Multi-ensemble regional simulation of Indian monsoon during contrasting rainfall years: role of convective schemes and nested domain

    Science.gov (United States)

    Devanand, Anjana; Ghosh, Subimal; Paul, Supantha; Karmakar, Subhankar; Niyogi, Dev

    2017-08-01

    Regional simulations of the seasonal Indian summer monsoon rainfall (ISMR) require an understanding of the model sensitivities to physics and resolution, and its effect on the model uncertainties. It is also important to quantify the added value in the simulated sub-regional precipitation characteristics by a regional climate model (RCM), when compared to coarse resolution rainfall products. This study presents regional model simulations of ISMR at seasonal scale using the Weather Research and Forecasting (WRF) model with the synoptic scale forcing from ERA-interim reanalysis, for three contrasting monsoon seasons, 1994 (excess), 2002 (deficit) and 2010 (normal). Impact of four cumulus schemes, viz., Kain-Fritsch (KF), Betts-Janjić-Miller, Grell 3D and modified Kain-Fritsch (KFm), and two micro physical parameterization schemes, viz., WRF Single Moment Class 5 scheme and Lin et al. scheme (LIN), with eight different possible combinations are analyzed. The impact of spectral nudging on model sensitivity is also studied. In WRF simulations using spectral nudging, improvement in model rainfall appears to be consistent in regions with topographic variability such as Central Northeast and Konkan Western Ghat sub-regions. However the results are also dependent on choice of cumulus scheme used, with KF and KFm providing relatively good performance and the eight member ensemble mean showing better results for these sub-regions. There is no consistent improvement noted in Northeast and Peninsular Indian monsoon regions. Results indicate that the regional simulations using nested domains can provide some improvements on ISMR simulations. Spectral nudging is found to improve upon the model simulations in terms of reducing the intra ensemble spread and hence the uncertainty in the model simulated precipitation. The results provide important insights regarding the need for further improvements in the regional climate simulations of ISMR for various sub-regions and contribute

  15. Lessons from Climate Modeling on the Design and Use of Ensembles for Crop Modeling

    Science.gov (United States)

    Wallach, Daniel; Mearns, Linda O.; Ruane, Alexander C.; Roetter, Reimund P.; Asseng, Senthold

    2016-01-01

    Working with ensembles of crop models is a recent but important development in crop modeling which promises to lead to better uncertainty estimates for model projections and predictions, better predictions using the ensemble mean or median, and closer collaboration within the modeling community. There are numerous open questions about the best way to create and analyze such ensembles. Much can be learned from the field of climate modeling, given its much longer experience with ensembles. We draw on that experience to identify questions and make propositions that should help make ensemble modeling with crop models more rigorous and informative. The propositions include defining criteria for acceptance of models in a crop MME, exploring criteria for evaluating the degree of relatedness of models in a MME, studying the effect of number of models in the ensemble, development of a statistical model of model sampling, creation of a repository for MME results, studies of possible differential weighting of models in an ensemble, creation of single model ensembles based on sampling from the uncertainty distribution of parameter values or inputs specifically oriented toward uncertainty estimation, the creation of super ensembles that sample more than one source of uncertainty, the analysis of super ensemble results to obtain information on total uncertainty and the separate contributions of different sources of uncertainty and finally further investigation of the use of the multi-model mean or median as a predictor.

  16. Laboratory simulations of cumulus cloud flows explain the entrainment anomaly

    Science.gov (United States)

    Narasimha, Roddam; Diwan, Sourabh S.; Subrahmanyam, Duvvuri; Sreenivas, K. R.; Bhat, G. S.

    2010-11-01

    In the present laboratory experiments, cumulus cloud flows are simulated by starting plumes and jets subjected to off-source heat addition in amounts that are dynamically similar to latent heat release due to condensation in real clouds. The setup permits incorporation of features like atmospheric inversion layers and the active control of off-source heat addition. Herein we report, for the first time, simulation of five different cumulus cloud types (and many shapes), including three genera and three species (WMO Atlas 1987), which show striking resemblance to real clouds. It is known that the rate of entrainment in cumulus cloud flows is much less than that in classical plumes - the main reason for the failure of early entrainment models. Some of the previous studies on steady-state jets and plumes (done in a similar setup) have attributed this anomaly to the disruption of the large-scale turbulent structures upon the addition of off-source heat. We present estimates of entrainment coefficients from these measurements which show a qualitatively consistent variation with height. We propose that this explains the observed entrainment anomaly in cumulus clouds; further experiments are planned to address this question in the context of starting jets and plumes.

  17. Design ensemble machine learning model for breast cancer diagnosis.

    Science.gov (United States)

    Hsieh, Sheau-Ling; Hsieh, Sung-Huai; Cheng, Po-Hsun; Chen, Chi-Huang; Hsu, Kai-Ping; Lee, I-Shun; Wang, Zhenyu; Lai, Feipei

    2012-10-01

    In this paper, we classify the breast cancer of medical diagnostic data. Information gain has been adapted for feature selections. Neural fuzzy (NF), k-nearest neighbor (KNN), quadratic classifier (QC), each single model scheme as well as their associated, ensemble ones have been developed for classifications. In addition, a combined ensemble model with these three schemes has been constructed for further validations. The experimental results indicate that the ensemble learning performs better than individual single ones. Moreover, the combined ensemble model illustrates the highest accuracy of classifications for the breast cancer among all models.

  18. Modeling task-specific neuronal ensembles improves decoding of grasp

    Science.gov (United States)

    Smith, Ryan J.; Soares, Alcimar B.; Rouse, Adam G.; Schieber, Marc H.; Thakor, Nitish V.

    2018-06-01

    Objective. Dexterous movement involves the activation and coordination of networks of neuronal populations across multiple cortical regions. Attempts to model firing of individual neurons commonly treat the firing rate as directly modulating with motor behavior. However, motor behavior may additionally be associated with modulations in the activity and functional connectivity of neurons in a broader ensemble. Accounting for variations in neural ensemble connectivity may provide additional information about the behavior being performed. Approach. In this study, we examined neural ensemble activity in primary motor cortex (M1) and premotor cortex (PM) of two male rhesus monkeys during performance of a center-out reach, grasp and manipulate task. We constructed point process encoding models of neuronal firing that incorporated task-specific variations in the baseline firing rate as well as variations in functional connectivity with the neural ensemble. Models were evaluated both in terms of their encoding capabilities and their ability to properly classify the grasp being performed. Main results. Task-specific ensemble models correctly predicted the performed grasp with over 95% accuracy and were shown to outperform models of neuronal activity that assume only a variable baseline firing rate. Task-specific ensemble models exhibited superior decoding performance in 82% of units in both monkeys (p  <  0.01). Inclusion of ensemble activity also broadly improved the ability of models to describe observed spiking. Encoding performance of task-specific ensemble models, measured by spike timing predictability, improved upon baseline models in 62% of units. Significance. These results suggest that additional discriminative information about motor behavior found in the variations in functional connectivity of neuronal ensembles located in motor-related cortical regions is relevant to decode complex tasks such as grasping objects, and may serve the basis for more

  19. The Development of Storm Surge Ensemble Prediction System and Case Study of Typhoon Meranti in 2016

    Science.gov (United States)

    Tsai, Y. L.; Wu, T. R.; Terng, C. T.; Chu, C. H.

    2017-12-01

    Taiwan is under the threat of storm surge and associated inundation, which is located at a potentially severe storm generation zone. The use of ensemble prediction can help forecasters to know the characteristic of storm surge under the uncertainty of track and intensity. In addition, it can help the deterministic forecasting. In this study, the kernel of ensemble prediction system is based on COMCOT-SURGE (COrnell Multi-grid COupled Tsunami Model - Storm Surge). COMCOT-SURGE solves nonlinear shallow water equations in Open Ocean and coastal regions with the nested-grid scheme and adopts wet-dry-cell treatment to calculate potential inundation area. In order to consider tide-surge interaction, the global TPXO 7.1 tide model provides the tidal boundary conditions. After a series of validations and case studies, COMCOT-SURGE has become an official operating system of Central Weather Bureau (CWB) in Taiwan. In this study, the strongest typhoon in 2016, Typhoon Meranti, is chosen as a case study. We adopt twenty ensemble members from CWB WRF Ensemble Prediction System (CWB WEPS), which differs from parameters of microphysics, boundary layer, cumulus, and surface. From box-and-whisker results, maximum observed storm surges were located in the interval of the first and third quartile at more than 70 % gauge locations, e.g. Toucheng, Chengkung, and Jiangjyun. In conclusion, the ensemble prediction can effectively help forecasters to predict storm surge especially under the uncertainty of storm track and intensity

  20. A Simple Approach to Account for Climate Model Interdependence in Multi-Model Ensembles

    Science.gov (United States)

    Herger, N.; Abramowitz, G.; Angelil, O. M.; Knutti, R.; Sanderson, B.

    2016-12-01

    Multi-model ensembles are an indispensable tool for future climate projection and its uncertainty quantification. Ensembles containing multiple climate models generally have increased skill, consistency and reliability. Due to the lack of agreed-on alternatives, most scientists use the equally-weighted multi-model mean as they subscribe to model democracy ("one model, one vote").Different research groups are known to share sections of code, parameterizations in their model, literature, or even whole model components. Therefore, individual model runs do not represent truly independent estimates. Ignoring this dependence structure might lead to a false model consensus, wrong estimation of uncertainty and effective number of independent models.Here, we present a way to partially address this problem by selecting a subset of CMIP5 model runs so that its climatological mean minimizes the RMSE compared to a given observation product. Due to the cancelling out of errors, regional biases in the ensemble mean are reduced significantly.Using a model-as-truth experiment we demonstrate that those regional biases persist into the future and we are not fitting noise, thus providing improved observationally-constrained projections of the 21st century. The optimally selected ensemble shows significantly higher global mean surface temperature projections than the original ensemble, where all the model runs are considered. Moreover, the spread is decreased well beyond that expected from the decreased ensemble size.Several previous studies have recommended an ensemble selection approach based on performance ranking of the model runs. Here, we show that this approach can perform even worse than randomly selecting ensemble members and can thus be harmful. We suggest that accounting for interdependence in the ensemble selection process is a necessary step for robust projections for use in impact assessments, adaptation and mitigation of climate change.

  1. Impact of cloud microphysics and cumulus parameterization on ...

    Indian Academy of Sciences (India)

    2007-10-09

    Oct 9, 2007 ... Bangladesh. Weather Research and Forecast (WRF–ARW version) modelling system with six dif- .... tem intensified rapidly into a land depression over southern part of ... Impact of cloud microphysics and cumulus parameterization on heavy rainfall. 261 .... tent and temperature and is represented as a sum.

  2. A multi-model ensemble approach to seabed mapping

    Science.gov (United States)

    Diesing, Markus; Stephens, David

    2015-06-01

    Seabed habitat mapping based on swath acoustic data and ground-truth samples is an emergent and active marine science discipline. Significant progress could be achieved by transferring techniques and approaches that have been successfully developed and employed in such fields as terrestrial land cover mapping. One such promising approach is the multiple classifier system, which aims at improving classification performance by combining the outputs of several classifiers. Here we present results of a multi-model ensemble applied to multibeam acoustic data covering more than 5000 km2 of seabed in the North Sea with the aim to derive accurate spatial predictions of seabed substrate. A suite of six machine learning classifiers (k-Nearest Neighbour, Support Vector Machine, Classification Tree, Random Forest, Neural Network and Naïve Bayes) was trained with ground-truth sample data classified into seabed substrate classes and their prediction accuracy was assessed with an independent set of samples. The three and five best performing models were combined to classifier ensembles. Both ensembles led to increased prediction accuracy as compared to the best performing single classifier. The improvements were however not statistically significant at the 5% level. Although the three-model ensemble did not perform significantly better than its individual component models, we noticed that the five-model ensemble did perform significantly better than three of the five component models. A classifier ensemble might therefore be an effective strategy to improve classification performance. Another advantage is the fact that the agreement in predicted substrate class between the individual models of the ensemble could be used as a measure of confidence. We propose a simple and spatially explicit measure of confidence that is based on model agreement and prediction accuracy.

  3. Cumulus Microphysics and Climate Sensitivity.

    Science.gov (United States)

    del Genio, Anthony D.; Kovari, William; Yao, Mao-Sung; Jonas, Jeffrey

    2005-07-01

    Precipitation processes in convective storms are potentially a major regulator of cloud feedback. An unresolved issue is how the partitioning of convective condensate between precipitation-size particles that fall out of updrafts and smaller particles that are detrained to form anvil clouds will change as the climate warms. Tropical Rainfall Measuring Mission (TRMM) observations of tropical oceanic convective storms indicate higher precipitation efficiency at warmer sea surface temperature (SST) but also suggest that cumulus anvil sizes, albedos, and ice water paths become insensitive to warming at high temperatures. International Satellite Cloud Climatology Project (ISCCP) data show that instantaneous cirrus and deep convective cloud fractions are positively correlated and increase with SST except at the highest temperatures, but are sensitive to variations in large-scale vertical velocity. A simple conceptual model based on a Marshall-Palmer drop size distribution, empirical terminal velocity-particle size relationships, and assumed cumulus updraft speeds reproduces the observed tendency for detrained condensate to approach a limiting value at high SST. These results suggest that the climatic behavior of observed tropical convective clouds is intermediate between the extremes required to support the thermostat and adaptive iris hypotheses.

  4. Pauci ex tanto numero: reducing redundancy in multi-model ensembles

    Science.gov (United States)

    Solazzo, E.; Riccio, A.; Kioutsioukis, I.; Galmarini, S.

    2013-02-01

    We explicitly address the fundamental issue of member diversity in multi-model ensembles. To date no attempts in this direction are documented within the air quality (AQ) community, although the extensive use of ensembles in this field. Common biases and redundancy are the two issues directly deriving from lack of independence, undermining the significance of a multi-model ensemble, and are the subject of this study. Shared biases among models will determine a biased ensemble, making therefore essential the errors of the ensemble members to be independent so that bias can cancel out. Redundancy derives from having too large a portion of common variance among the members of the ensemble, producing overconfidence in the predictions and underestimation of the uncertainty. The two issues of common biases and redundancy are analysed in detail using the AQMEII ensemble of AQ model results for four air pollutants in two European regions. We show that models share large portions of bias and variance, extending well beyond those induced by common inputs. We make use of several techniques to further show that subsets of models can explain the same amount of variance as the full ensemble with the advantage of being poorly correlated. Selecting the members for generating skilful, non-redundant ensembles from such subsets proved, however, non-trivial. We propose and discuss various methods of member selection and rate the ensemble performance they produce. In most cases, the full ensemble is outscored by the reduced ones. We conclude that, although independence of outputs may not always guarantee enhancement of scores (but this depends upon the skill being investigated) we discourage selecting the members of the ensemble simply on the basis of scores, that is, independence and skills need to be considered disjointly.

  5. Ensemble atmospheric dispersion modeling for emergency response consequence assessments

    International Nuclear Information System (INIS)

    Addis, R.P.; Buckley, R.L.

    2003-01-01

    Full text: Prognostic atmospheric dispersion models are used to generate consequence assessments, which assist decision-makers in the event of a release from a nuclear facility. Differences in the forecast wind fields generated by various meteorological agencies, differences in the transport and diffusion models themselves, as well as differences in the way these models treat the release source term, all may result in differences in the simulated plumes. This talk will address the U.S. participation in the European ENSEMBLE project, and present a perspective an how ensemble techniques may be used to enable atmospheric modelers to provide decision-makers with a more realistic understanding of how both the atmosphere and the models behave. Meteorological forecasts generated by numerical models from national and multinational meteorological agencies provide individual realizations of three-dimensional, time dependent atmospheric wind fields. These wind fields may be used to drive atmospheric dispersion (transport and diffusion) models, or they may be used to initiate other, finer resolution meteorological models, which in turn drive dispersion models. Many modeling agencies now utilize ensemble-modeling techniques to determine how sensitive the prognostic fields are to minor perturbations in the model parameters. However, the European Union programs RTMOD and ENSEMBLE are the first projects to utilize a WEB based ensemble approach to interpret the output from atmospheric dispersion models. The ensembles produced are different from those generated by meteorological forecasting centers in that they are ensembles of dispersion model outputs from many different atmospheric transport and diffusion models utilizing prognostic atmospheric fields from several different forecast centers. As such, they enable a decision-maker to consider the uncertainty in the plume transport and growth as a result of the differences in the forecast wind fields as well as the differences in the

  6. Pauci ex tanto numero: reduce redundancy in multi-model ensembles

    Science.gov (United States)

    Solazzo, E.; Riccio, A.; Kioutsioukis, I.; Galmarini, S.

    2013-08-01

    We explicitly address the fundamental issue of member diversity in multi-model ensembles. To date, no attempts in this direction have been documented within the air quality (AQ) community despite the extensive use of ensembles in this field. Common biases and redundancy are the two issues directly deriving from lack of independence, undermining the significance of a multi-model ensemble, and are the subject of this study. Shared, dependant biases among models do not cancel out but will instead determine a biased ensemble. Redundancy derives from having too large a portion of common variance among the members of the ensemble, producing overconfidence in the predictions and underestimation of the uncertainty. The two issues of common biases and redundancy are analysed in detail using the AQMEII ensemble of AQ model results for four air pollutants in two European regions. We show that models share large portions of bias and variance, extending well beyond those induced by common inputs. We make use of several techniques to further show that subsets of models can explain the same amount of variance as the full ensemble with the advantage of being poorly correlated. Selecting the members for generating skilful, non-redundant ensembles from such subsets proved, however, non-trivial. We propose and discuss various methods of member selection and rate the ensemble performance they produce. In most cases, the full ensemble is outscored by the reduced ones. We conclude that, although independence of outputs may not always guarantee enhancement of scores (but this depends upon the skill being investigated), we discourage selecting the members of the ensemble simply on the basis of scores; that is, independence and skills need to be considered disjointly.

  7. New pathway of stratocumulus to cumulus transition via aerosol-cloud-precipitation interaction

    Science.gov (United States)

    Yamaguchi, T.; Feingold, G.; Kazil, J.

    2017-12-01

    The stratocumulus to cumulus transition (SCT) is typically considered to be a slow, multi-day process, caused primarily by dry air entrainment associated with overshooting cumulus rising under stratocumulus, with minor influence of precipitation. In this presentation, we show rapid SCT induced by a strong precipitation-induced modulation with Lagrangian SCT large eddy simulations. A large eddy model is coupled with a two-moment bulk microphysics scheme that predicts aerosol and droplet number concentrations. Moderate aerosol concentrations (100-250 cm-3) produce little to no drizzle from the stratocumulus deck. Large amounts of rain eventually form and wash out stratocumulus and much of the aerosol, and a cumulus state appears for approximately 10 hours. Initiation of strong rain formation is identified in penetrative cumulus clouds which are much deeper than stratocumulus, and they are able to condense large amounts of water. We show that prediction of cloud droplet number is necessary for this fast SCT since it is a result of a positive feedback of collision-coalescence induced aerosol depletion enhancing drizzle formation. Simulations with fixed droplet concentrations that bracket the time varying aerosol/drop concentrations are therefore not representative of the role of drizzle in the SCT.

  8. Effects of selected endocrine disruptors on meiotic maturation, cumulus expansion, syntesis of hyaluronan and progesterone by porcine oocyte-cumulus complexes

    Czech Academy of Sciences Publication Activity Database

    Mlynarčíková, A.; Nagyová, Eva; Ficková, M.; Scsuková, S.

    2009-01-01

    Roč. 23, - (2009), s. 371-377 ISSN 0887-2333 R&D Projects: GA ČR GA305/05/0960 Grant - others:VEGA(SK) 2/6171/26; EU(XE) QLK4-CT-2002-02637 Institutional research plan: CEZ:AV0Z50450515 Keywords : oocyte-cumulus complex * meiotic maturation * cumulus expansion Subject RIV: EB - Genetics ; Molecular Biology Impact factor: 2.060, year: 2009

  9. Selecting a climate model subset to optimise key ensemble properties

    Directory of Open Access Journals (Sweden)

    N. Herger

    2018-02-01

    Full Text Available End users studying impacts and risks caused by human-induced climate change are often presented with large multi-model ensembles of climate projections whose composition and size are arbitrarily determined. An efficient and versatile method that finds a subset which maintains certain key properties from the full ensemble is needed, but very little work has been done in this area. Therefore, users typically make their own somewhat subjective subset choices and commonly use the equally weighted model mean as a best estimate. However, different climate model simulations cannot necessarily be regarded as independent estimates due to the presence of duplicated code and shared development history. Here, we present an efficient and flexible tool that makes better use of the ensemble as a whole by finding a subset with improved mean performance compared to the multi-model mean while at the same time maintaining the spread and addressing the problem of model interdependence. Out-of-sample skill and reliability are demonstrated using model-as-truth experiments. This approach is illustrated with one set of optimisation criteria but we also highlight the flexibility of cost functions, depending on the focus of different users. The technique is useful for a range of applications that, for example, minimise present-day bias to obtain an accurate ensemble mean, reduce dependence in ensemble spread, maximise future spread, ensure good performance of individual models in an ensemble, reduce the ensemble size while maintaining important ensemble characteristics, or optimise several of these at the same time. As in any calibration exercise, the final ensemble is sensitive to the metric, observational product, and pre-processing steps used.

  10. Selecting a climate model subset to optimise key ensemble properties

    Science.gov (United States)

    Herger, Nadja; Abramowitz, Gab; Knutti, Reto; Angélil, Oliver; Lehmann, Karsten; Sanderson, Benjamin M.

    2018-02-01

    End users studying impacts and risks caused by human-induced climate change are often presented with large multi-model ensembles of climate projections whose composition and size are arbitrarily determined. An efficient and versatile method that finds a subset which maintains certain key properties from the full ensemble is needed, but very little work has been done in this area. Therefore, users typically make their own somewhat subjective subset choices and commonly use the equally weighted model mean as a best estimate. However, different climate model simulations cannot necessarily be regarded as independent estimates due to the presence of duplicated code and shared development history. Here, we present an efficient and flexible tool that makes better use of the ensemble as a whole by finding a subset with improved mean performance compared to the multi-model mean while at the same time maintaining the spread and addressing the problem of model interdependence. Out-of-sample skill and reliability are demonstrated using model-as-truth experiments. This approach is illustrated with one set of optimisation criteria but we also highlight the flexibility of cost functions, depending on the focus of different users. The technique is useful for a range of applications that, for example, minimise present-day bias to obtain an accurate ensemble mean, reduce dependence in ensemble spread, maximise future spread, ensure good performance of individual models in an ensemble, reduce the ensemble size while maintaining important ensemble characteristics, or optimise several of these at the same time. As in any calibration exercise, the final ensemble is sensitive to the metric, observational product, and pre-processing steps used.

  11. Cumulus Cell Expansion, Its Role in Oocyte Biology and Perspectives of Measurement: A Review

    Directory of Open Access Journals (Sweden)

    Nevoral J.

    2015-01-01

    Full Text Available Cumulus expansion of the cumulus-oocyte complex is necessary for meiotic maturation and acquiring developmental competence. Cumulus expansion is based on extracellular matrix synthesis by cumulus cells. Hyaluronic acid is the most abundant component of this extracellular matrix. Cumulus expansion takes place during meiotic oocyte maturation under in vivo and in vitro conditions. Quantification and measurement of cumulus expansion intensity is one possible method of determining oocyte quality and optimizing conditions for in vitro cultivation. Currently, subjective methods of expanded area and more exact cumulus expansion measurement by hyaluronic acid assessment are available. Among the methods of hyaluronic acid measurement is the use of radioactively labelled synthesis precursors. Alternatively, immunological and analytical methods, including enzyme-linked immunosorbent assay (ELISA, spectrophotometry, and high-performance liquid chromatography (HPLC in UV light, could be utilized. The high sensitivity of these methods could provide a precise analysis of cumulus expansion without the use of radioisotopes. Therefore, the aim of this review is to summarize and compare available approaches of cumulus expansion measurement, respecting special biological features of expanded cumuli, and to suggest possible solutions for exact cumulus expansion analysis.

  12. Multi-objective optimization for generating a weighted multi-model ensemble

    Science.gov (United States)

    Lee, H.

    2017-12-01

    Many studies have demonstrated that multi-model ensembles generally show better skill than each ensemble member. When generating weighted multi-model ensembles, the first step is measuring the performance of individual model simulations using observations. There is a consensus on the assignment of weighting factors based on a single evaluation metric. When considering only one evaluation metric, the weighting factor for each model is proportional to a performance score or inversely proportional to an error for the model. While this conventional approach can provide appropriate combinations of multiple models, the approach confronts a big challenge when there are multiple metrics under consideration. When considering multiple evaluation metrics, it is obvious that a simple averaging of multiple performance scores or model ranks does not address the trade-off problem between conflicting metrics. So far, there seems to be no best method to generate weighted multi-model ensembles based on multiple performance metrics. The current study applies the multi-objective optimization, a mathematical process that provides a set of optimal trade-off solutions based on a range of evaluation metrics, to combining multiple performance metrics for the global climate models and their dynamically downscaled regional climate simulations over North America and generating a weighted multi-model ensemble. NASA satellite data and the Regional Climate Model Evaluation System (RCMES) software toolkit are used for assessment of the climate simulations. Overall, the performance of each model differs markedly with strong seasonal dependence. Because of the considerable variability across the climate simulations, it is important to evaluate models systematically and make future projections by assigning optimized weighting factors to the models with relatively good performance. Our results indicate that the optimally weighted multi-model ensemble always shows better performance than an arithmetic

  13. Mitochondrial dysfunction and apoptosis in cumulus cells of type I diabetic mice.

    Directory of Open Access Journals (Sweden)

    Qiang Wang

    2010-12-01

    Full Text Available Impaired oocyte quality has been demonstrated in diabetic mice; however, the potential pathways by which maternal diabetes exerts its effects on the oocyte are poorly understood. Cumulus cells are in direct contact with the oocyte via gap junctions and provide essential nutrients to support oocyte development. In this study, we investigated the effects of maternal diabetes on the mitochondrial status in cumulus cells. We found an increased frequency of fragmented mitochondria, a decreased transmembrane potential and an aggregated distribution of mitochondria in cumulus cells from diabetic mice. Furthermore, while mitochondrial biogenesis in cumulus cells was induced by maternal diabetes, their metabolic function was disrupted as evidenced by lower ATP and citrate levels. Moreover, we present evidence suggesting that the mitochondrial impairments induced by maternal diabetes, at least in part, lead to cumulus cell apoptosis through the release of cytochrome c. Together the deleterious effects on cumulus cells may disrupt trophic and signaling interactions with the oocyte, contributing to oocyte incompetence and thus poor pregnancy outcomes in diabetic females.

  14. Hotelli Cumulus Mikkelin majoitusasiakkaiden tyytyväisyys

    OpenAIRE

    Kinnunen, Jenni Ljuba

    2016-01-01

    Tämän opinnäytetyön tavoitteena on tutkia majoitusasiakkaiden tyytyväisyyttä hotelli Cumulus Mikkelissä keskittyen pääosin hotellin vastaanottoon, hotellihuoneeseen, Huviretki-ravintolaan ja aamiaiseen. Opinnäytetyön toimeksiantaja on hotelli Cumulus Mikkeli. Tässä opinnäytetyössä käytetään kvalitatiivista tutkimusmenetelmää ja tutkimusaineisto kerättiin haastattelemalla hotellin majoitusasiakkaita yksitellen kyselylomakkeen kanssa. Haastateltujen asiakkaiden määrä oli 20, joista 10 ...

  15. An educational model for ensemble streamflow simulation and uncertainty analysis

    Directory of Open Access Journals (Sweden)

    A. AghaKouchak

    2013-02-01

    Full Text Available This paper presents the hands-on modeling toolbox, HBV-Ensemble, designed as a complement to theoretical hydrology lectures, to teach hydrological processes and their uncertainties. The HBV-Ensemble can be used for in-class lab practices and homework assignments, and assessment of students' understanding of hydrological processes. Using this modeling toolbox, students can gain more insights into how hydrological processes (e.g., precipitation, snowmelt and snow accumulation, soil moisture, evapotranspiration and runoff generation are interconnected. The educational toolbox includes a MATLAB Graphical User Interface (GUI and an ensemble simulation scheme that can be used for teaching uncertainty analysis, parameter estimation, ensemble simulation and model sensitivity. HBV-Ensemble was administered in a class for both in-class instruction and a final project, and students submitted their feedback about the toolbox. The results indicate that this educational software had a positive impact on students understanding and knowledge of uncertainty in hydrological modeling.

  16. A note on the multi model super ensemble technique for reducing forecast errors

    International Nuclear Information System (INIS)

    Kantha, L.; Carniel, S.; Sclavo, M.

    2008-01-01

    The multi model super ensemble (S E) technique has been used with considerable success to improve meteorological forecasts and is now being applied to ocean models. Although the technique has been shown to produce deterministic forecasts that can be superior to the individual models in the ensemble or a simple multi model ensemble forecast, there is a clear need to understand its strengths and limitations. This paper is an attempt to do so in simple, easily understood contexts. The results demonstrate that the S E forecast is almost always better than the simple ensemble forecast, the degree of improvement depending on the properties of the models in the ensemble. However, the skill of the S E forecast with respect to the true forecast depends on a number of factors, principal among which is the skill of the models in the ensemble. As can be expected, if the ensemble consists of models with poor skill, the S E forecast will also be poor, although better than the ensemble forecast. On the other hand, the inclusion of even a single skillful model in the ensemble increases the forecast skill significantly.

  17. Multi-model ensembles for assessment of flood losses and associated uncertainty

    Science.gov (United States)

    Figueiredo, Rui; Schröter, Kai; Weiss-Motz, Alexander; Martina, Mario L. V.; Kreibich, Heidi

    2018-05-01

    Flood loss modelling is a crucial part of risk assessments. However, it is subject to large uncertainty that is often neglected. Most models available in the literature are deterministic, providing only single point estimates of flood loss, and large disparities tend to exist among them. Adopting any one such model in a risk assessment context is likely to lead to inaccurate loss estimates and sub-optimal decision-making. In this paper, we propose the use of multi-model ensembles to address these issues. This approach, which has been applied successfully in other scientific fields, is based on the combination of different model outputs with the aim of improving the skill and usefulness of predictions. We first propose a model rating framework to support ensemble construction, based on a probability tree of model properties, which establishes relative degrees of belief between candidate models. Using 20 flood loss models in two test cases, we then construct numerous multi-model ensembles, based both on the rating framework and on a stochastic method, differing in terms of participating members, ensemble size and model weights. We evaluate the performance of ensemble means, as well as their probabilistic skill and reliability. Our results demonstrate that well-designed multi-model ensembles represent a pragmatic approach to consistently obtain more accurate flood loss estimates and reliable probability distributions of model uncertainty.

  18. Ensemble modeling for aromatic production in Escherichia coli.

    Directory of Open Access Journals (Sweden)

    Matthew L Rizk

    2009-09-01

    Full Text Available Ensemble Modeling (EM is a recently developed method for metabolic modeling, particularly for utilizing the effect of enzyme tuning data on the production of a specific compound to refine the model. This approach is used here to investigate the production of aromatic products in Escherichia coli. Instead of using dynamic metabolite data to fit a model, the EM approach uses phenotypic data (effects of enzyme overexpression or knockouts on the steady state production rate to screen possible models. These data are routinely generated during strain design. An ensemble of models is constructed that all reach the same steady state and are based on the same mechanistic framework at the elementary reaction level. The behavior of the models spans the kinetics allowable by thermodynamics. Then by using existing data from the literature for the overexpression of genes coding for transketolase (Tkt, transaldolase (Tal, and phosphoenolpyruvate synthase (Pps to screen the ensemble, we arrive at a set of models that properly describes the known enzyme overexpression phenotypes. This subset of models becomes more predictive as additional data are used to refine the models. The final ensemble of models demonstrates the characteristic of the cell that Tkt is the first rate controlling step, and correctly predicts that only after Tkt is overexpressed does an increase in Pps increase the production rate of aromatics. This work demonstrates that EM is able to capture the result of enzyme overexpression on aromatic producing bacteria by successfully utilizing routinely generated enzyme tuning data to guide model learning.

  19. A preliminary study of the tropical water cycle and its sensitivity to surface warming

    Science.gov (United States)

    Lau, K. M.; Sui, C. H.; Tao, W. K.

    1993-01-01

    The Goddard Cumulus Ensemble Model (GCEM) has been used to demonstrate that cumulus-scale dynamics and microphysics play a major role in determining the vertical distribution of water vapor and clouds in the tropical atmosphere. The GCEM is described and is the basic structure of cumulus convection. The long-term equilibrium response to tropical convection to surface warming is examined. A picture of the water cycle within tropical cumulus clusters is developed.

  20. HIGH-RESOLUTION ATMOSPHERIC ENSEMBLE MODELING AT SRNL

    Energy Technology Data Exchange (ETDEWEB)

    Buckley, R.; Werth, D.; Chiswell, S.; Etherton, B.

    2011-05-10

    The High-Resolution Mid-Atlantic Forecasting Ensemble (HME) is a federated effort to improve operational forecasts related to precipitation, convection and boundary layer evolution, and fire weather utilizing data and computing resources from a diverse group of cooperating institutions in order to create a mesoscale ensemble from independent members. Collaborating organizations involved in the project include universities, National Weather Service offices, and national laboratories, including the Savannah River National Laboratory (SRNL). The ensemble system is produced from an overlapping numerical weather prediction model domain and parameter subsets provided by each contributing member. The coordination, synthesis, and dissemination of the ensemble information are performed by the Renaissance Computing Institute (RENCI) at the University of North Carolina-Chapel Hill. This paper discusses background related to the HME effort, SRNL participation, and example results available from the RENCI website.

  1. Effect of exogenous progesterone on cumulus characteristics of buffalo oocytes by allowing passage of more number of sperm through cumulus but not essentially fertilization

    Directory of Open Access Journals (Sweden)

    Madhusmita Panda

    2018-03-01

    Full Text Available Objective: To understand the level of progesterone (P4 in different quality of buffalo cumulus oocyte complexes (COCs and further to evaluate the effect of exogenous P4 supplementation on maturation and subsequent developmental ability of poor quality brilliant cresyl blue (BCB- COCs. Methods: Progesterone secreted by different quality of buffalo oocytes was estimated by enzyme linked immunosorbent assay and the concentration differences were translated into P4 doses to be incorporated in the maturation medium of BCB-ve COCs followed by expression analysis of genes involved in the cumulus expansion, extracellular matrix disintegration and progesterone receptor signalling. In addition, the study also evaluated the effect of exogenous P4 on sperm-cumulus interaction. Results: More than 10-fold upregulated expression of progesterone receptor in P4 supplemented oocytes signified that P4 might be acting predominantly through this receptor. Also, exogenous P4 supplementation had significant effect on transcatheter arterial chemoembolization protease regulated by P4- progesterone receptor pathway which in turn had an important role in extracellular matrix disintegration. On the contrary, cumulus expansion genes HAS2, TNFAIP6, AREG were not altered upon P4 supplementation. Also, it was observed that P4 addition did facilitate passage of significantly more number of spermatozoa through P4 treated cumulus cells. Further, incorporation of different doses of P4 did not improve significantly the cleavage and blastocyst rates of BCB-ve COCs. Conclusions: Different qualities of buffalo COCs secrete substantially diverse levels of P4, and its supplementation has a role in oocyte maturation via modulation of cumulus characteristics but perhaps not fertilization.

  2. Cumulus parameterizations in chemical transport models

    Science.gov (United States)

    Mahowald, Natalie M.; Rasch, Philip J.; Prinn, Ronald G.

    1995-12-01

    Global three-dimensional chemical transport models (CTMs) are valuable tools for studying processes controlling the distribution of trace constituents in the atmosphere. A major uncertainty in these models is the subgrid-scale parametrization of transport by cumulus convection. This study seeks to define the range of behavior of moist convective schemes and point toward more reliable formulations for inclusion in chemical transport models. The emphasis is on deriving convective transport from meteorological data sets (such as those from the forecast centers) which do not routinely include convective mass fluxes. Seven moist convective parameterizations are compared in a column model to examine the sensitivity of the vertical profile of trace gases to the parameterization used in a global chemical transport model. The moist convective schemes examined are the Emanuel scheme [Emanuel, 1991], the Feichter-Crutzen scheme [Feichter and Crutzen, 1990], the inverse thermodynamic scheme (described in this paper), two versions of a scheme suggested by Hack [Hack, 1994], and two versions of a scheme suggested by Tiedtke (one following the formulation used in the ECMWF (European Centre for Medium-Range Weather Forecasting) and ECHAM3 (European Centre and Hamburg Max-Planck-Institut) models [Tiedtke, 1989], and one formulated as in the TM2 (Transport Model-2) model (M. Heimann, personal communication, 1992). These convective schemes vary in the closure used to derive the mass fluxes, as well as the cloud model formulation, giving a broad range of results. In addition, two boundary layer schemes are compared: a state-of-the-art nonlocal boundary layer scheme [Holtslag and Boville, 1993] and a simple adiabatic mixing scheme described in this paper. Three tests are used to compare the moist convective schemes against observations. Although the tests conducted here cannot conclusively show that one parameterization is better than the others, the tests are a good measure of the

  3. Effects of stratocumulus, cumulus, and cirrus clouds on the UV-B diffuse to global ratio: Experimental and modeling results

    International Nuclear Information System (INIS)

    López, María Laura; Palancar, Gustavo G.; Toselli, Beatriz M.

    2012-01-01

    Broadband measurements of global and diffuse UV-B irradiance (280-315 nm) together with modeled and measured diffuse to global ratios (DGR) have been used to characterize the influence of different types of clouds on irradiance at the surface. Measurements were carried out during 2000-2001 in Córdoba City, Argentina. The Tropospheric Ultraviolet Visible (TUV) model was used to analyze the behavior of the modeled DGRs for different cloud optical depths and at different altitudes and solar zenith angles (SZA). Different cloud altitudes were also tested, although only the results for a cloud placed at 1.5-2.5 km of altitude are shown. A total of 16 day with stratocumulus, 12 with cumulus, and 16 with cirrus have been studied and compared among them and also against 21 clear sky days. Different behaviors were clearly detected and also differentiated through the analysis of the averages and the standard deviations of the DGRs: 1.02±0.06 for stratocumulus, 0.74±0.18 for cumulus, 0.63±0.12 for cirrus, and 0.60±0.13 for the clear sky days, respectively. Stratocumulus clouds showed a low variability in the DGR values, which were concentrated close to one at all SZAs. DGR values for cumulus clouds presented a large variability at all SZAs, mostly associated with the different optical depths. Finally, the closeness between the DGR values for cirrus clouds and the DGR values for clear days showed that these clouds generally do not strongly affect the UV-B irradiance at the surface at any SZA. In the opposite side, stratocumulus clouds were identified as those with the largest effects, at all SZAs, on the UV-B irradiance at the surface.

  4. Short-range ensemble predictions based on convection perturbations in the Eta Model for the Serra do Mar region in Brazil

    Science.gov (United States)

    Bustamante, J. F. F.; Chou, S. C.; Gomes, J. L.

    2009-04-01

    The Southeast Brazil, in the coastal and mountain region called Serra do Mar, between Sao Paulo and Rio de Janeiro, is subject to frequent events of landslides and floods. The Eta Model has been producing good quality forecasts over South America at about 40-km horizontal resolution. For that type of hazards, however, more detailed and probabilistic information on the risks should be provided with the forecasts. Thus, a short-range ensemble prediction system (SREPS) based on the Eta Model is being constructed. Ensemble members derived from perturbed initial and lateral boundary conditions did not provide enough spread for the forecasts. Members with model physics perturbation are being included and tested. The objective of this work is to construct more members for the Eta SREPS by adding physics perturbed members. The Eta Model is configured at 10-km resolution and 38 layers in the vertical. The domain covered is most of Southeast Brazil, centered over the Serra do Mar region. The constructed members comprise variations of the cumulus parameterization Betts-Miller-Janjic (BMJ) and Kain-Fritsch (KF) schemes. Three members were constructed from the BMJ scheme by varying the deficit of saturation pressure profile over land and sea, and 2 members of the KF scheme were included using the standard KF and a momentum flux added to KF scheme version. One of the runs with BMJ scheme is the control run as it was used for the initial condition perturbation SREPS. The forecasts were tested for 6 cases of South America Convergence Zone (SACZ) events. The SACZ is a common summer season feature of Southern Hemisphere that causes persistent rain for a few days over the Southeast Brazil and it frequently organizes over Serra do Mar region. These events are particularly interesting because of the persistent rains that can accumulate large amounts and cause generalized landslides and death. With respect to precipitation, the KF scheme versions have shown to be able to reach the

  5. Laboratory Studies of Anomalous Entrainment in Cumulus Cloud Flows

    Science.gov (United States)

    Diwan, Sourabh S.; Narasimha, Roddam; Bhat, G. S.; Sreenivas, K. R.

    2011-12-01

    Entrainment in cumulus clouds has been a subject of investigation for the last sixty years, and continues to be a central issue in current research. The development of a laboratory facility that can simulate cumulus cloud evolution enables us to shed light on the problem. The apparatus for the purpose is based on a physical model of cloud flow as a plume with off-source diabatic heating that is dynamically similar to the effect of latent-heat release in natural clouds. We present a critical review of the experimental data so far obtained in such facilities on the variation of the entrainment coefficient in steady diabatic jets and plumes. Although there are some unexplained differences among different data sets, the dominant trend of the results compares favourably with recent numerical simulations on steady-state deep convection, and helps explain certain puzzles in the fluid dynamics of clouds.

  6. Laboratory Studies of Anomalous Entrainment in Cumulus Cloud Flows

    International Nuclear Information System (INIS)

    Diwan, Sourabh S; Narasimha, Roddam; Sreenivas, K R; Bhat, G S

    2011-01-01

    Entrainment in cumulus clouds has been a subject of investigation for the last sixty years, and continues to be a central issue in current research. The development of a laboratory facility that can simulate cumulus cloud evolution enables us to shed light on the problem. The apparatus for the purpose is based on a physical model of cloud flow as a plume with off-source diabatic heating that is dynamically similar to the effect of latent-heat release in natural clouds. We present a critical review of the experimental data so far obtained in such facilities on the variation of the entrainment coefficient in steady diabatic jets and plumes. Although there are some unexplained differences among different data sets, the dominant trend of the results compares favourably with recent numerical simulations on steady-state deep convection, and helps explain certain puzzles in the fluid dynamics of clouds.

  7. Ensemble models of neutrophil trafficking in severe sepsis.

    Directory of Open Access Journals (Sweden)

    Sang Ok Song

    Full Text Available A hallmark of severe sepsis is systemic inflammation which activates leukocytes and can result in their misdirection. This leads to both impaired migration to the locus of infection and increased infiltration into healthy tissues. In order to better understand the pathophysiologic mechanisms involved, we developed a coarse-grained phenomenological model of the acute inflammatory response in CLP (cecal ligation and puncture-induced sepsis in rats. This model incorporates distinct neutrophil kinetic responses to the inflammatory stimulus and the dynamic interactions between components of a compartmentalized inflammatory response. Ensembles of model parameter sets consistent with experimental observations were statistically generated using a Markov-Chain Monte Carlo sampling. Prediction uncertainty in the model states was quantified over the resulting ensemble parameter sets. Forward simulation of the parameter ensembles successfully captured experimental features and predicted that systemically activated circulating neutrophils display impaired migration to the tissue and neutrophil sequestration in the lung, consequently contributing to tissue damage and mortality. Principal component and multiple regression analyses of the parameter ensembles estimated from survivor and non-survivor cohorts provide insight into pathologic mechanisms dictating outcome in sepsis. Furthermore, the model was extended to incorporate hypothetical mechanisms by which immune modulation using extracorporeal blood purification results in improved outcome in septic rats. Simulations identified a sub-population (about 18% of the treated population that benefited from blood purification. Survivors displayed enhanced neutrophil migration to tissue and reduced sequestration of lung neutrophils, contributing to improved outcome. The model ensemble presented herein provides a platform for generating and testing hypotheses in silico, as well as motivating further experimental

  8. Aerosol microphysical and radiative effects on continental cloud ensembles

    Science.gov (United States)

    Wang, Yuan; Vogel, Jonathan M.; Lin, Yun; Pan, Bowen; Hu, Jiaxi; Liu, Yangang; Dong, Xiquan; Jiang, Jonathan H.; Yung, Yuk L.; Zhang, Renyi

    2018-02-01

    Aerosol-cloud-radiation interactions represent one of the largest uncertainties in the current climate assessment. Much of the complexity arises from the non-monotonic responses of clouds, precipitation and radiative fluxes to aerosol perturbations under various meteorological conditions. In this study, an aerosol-aware WRF model is used to investigate the microphysical and radiative effects of aerosols in three weather systems during the March 2000 Cloud Intensive Observational Period campaign at the US Southern Great Plains. Three simulated cloud ensembles include a low-pressure deep convective cloud system, a collection of less-precipitating stratus and shallow cumulus, and a cold frontal passage. The WRF simulations are evaluated by several ground-based measurements. The microphysical properties of cloud hydrometeors, such as their mass and number concentrations, generally show monotonic trends as a function of cloud condensation nuclei concentrations. Aerosol radiative effects do not influence the trends of cloud microphysics, except for the stratus and shallow cumulus cases where aerosol semi-direct effects are identified. The precipitation changes by aerosols vary with the cloud types and their evolving stages, with a prominent aerosol invigoration effect and associated enhanced precipitation from the convective sources. The simulated aerosol direct effect suppresses precipitation in all three cases but does not overturn the aerosol indirect effect. Cloud fraction exhibits much smaller sensitivity (typically less than 2%) to aerosol perturbations, and the responses vary with aerosol concentrations and cloud regimes. The surface shortwave radiation shows a monotonic decrease by increasing aerosols, while the magnitude of the decrease depends on the cloud type.

  9. The human cumulus--oocyte complex gene-expression profile

    Science.gov (United States)

    Assou, Said; Anahory, Tal; Pantesco, Véronique; Le Carrour, Tanguy; Pellestor, Franck; Klein, Bernard; Reyftmann, Lionel; Dechaud, Hervé; De Vos, John; Hamamah, Samir

    2006-01-01

    BACKGROUND The understanding of the mechanisms regulating human oocyte maturation is still rudimentary. We have identified transcripts differentially expressed between immature and mature oocytes, and cumulus cells. METHODS Using oligonucleotides microarrays, genome wide gene expression was studied in pooled immature and mature oocytes or cumulus cells from patients who underwent IVF. RESULTS In addition to known genes such as DAZL, BMP15 or GDF9, oocytes upregulated 1514 genes. We show that PTTG3 and AURKC are respectively the securin and the Aurora kinase preferentially expressed during oocyte meiosis. Strikingly, oocytes overexpressed previously unreported growth factors such as TNFSF13/APRIL, FGF9, FGF14, and IL4, and transcription factors including OTX2, SOX15 and SOX30. Conversely, cumulus cells, in addition to known genes such as LHCGR or BMPR2, overexpressed cell-tocell signaling genes including TNFSF11/RANKL, numerous complement components, semaphorins (SEMA3A, SEMA6A, SEMA6D) and CD genes such as CD200. We also identified 52 genes progressively increasing during oocyte maturation, comprising CDC25A and SOCS7. CONCLUSION The identification of genes up and down regulated during oocyte maturation greatly improves our understanding of oocyte biology and will provide new markers that signal viable and competent oocytes. Furthermore, genes found expressed in cumulus cells are potential markers of granulosa cell tumors. PMID:16571642

  10. Data assimilation in integrated hydrological modeling using ensemble Kalman filtering

    DEFF Research Database (Denmark)

    Rasmussen, Jørn; Madsen, H.; Jensen, Karsten Høgh

    2015-01-01

    Groundwater head and stream discharge is assimilated using the ensemble transform Kalman filter in an integrated hydrological model with the aim of studying the relationship between the filter performance and the ensemble size. In an attempt to reduce the required number of ensemble members...... and estimating parameters requires a much larger ensemble size than just assimilating groundwater head observations. However, the required ensemble size can be greatly reduced with the use of adaptive localization, which by far outperforms distance-based localization. The study is conducted using synthetic data...

  11. GHI calculation sensitivity on microphysics, land- and cumulus parameterization in WRF over the Reunion Island

    Science.gov (United States)

    De Meij, A.; Vinuesa, J.-F.; Maupas, V.

    2018-05-01

    The sensitivity of different microphysics and dynamics schemes on calculated global horizontal irradiation (GHI) values in the Weather Research Forecasting (WRF) model is studied. 13 sensitivity simulations were performed for which the microphysics, cumulus parameterization schemes and land surface models were changed. Firstly we evaluated the model's performance by comparing calculated GHI values for the Base Case with observations for the Reunion Island for 2014. In general, the model calculates the largest bias during the austral summer. This indicates that the model is less accurate in timing the formation and dissipation of clouds during the summer, when higher water vapor quantities are present in the atmosphere than during the austral winter. Secondly, the model sensitivity on changing the microphysics, cumulus parameterization and land surface models on calculated GHI values is evaluated. The sensitivity simulations showed that changing the microphysics from the Thompson scheme (or Single-Moment 6-class scheme) to the Morrison double-moment scheme, the relative bias improves from 45% to 10%. The underlying reason for this improvement is that the Morrison double-moment scheme predicts the mass and number concentrations of five hydrometeors, which help to improve the calculation of the densities, size and lifetime of the cloud droplets. While the single moment schemes only predicts the mass for less hydrometeors. Changing the cumulus parameterization schemes and land surface models does not have a large impact on GHI calculations.

  12. Effect of cumulus-oocyte complexes (COCs) culture duration on in ...

    African Journals Online (AJOL)

    We investigated and optimized the cumulus-oocyte complexes (COCs) culture duration for pig oocyte in vitro maturation and produced a number of high-quality metaphase-II (M-II) oocytes for generation of parthenotes. The present study graded the COCs into levels A, B and C according to layers of cumulus cells, which ...

  13. A Single-column Model Ensemble Approach Applied to the TWP-ICE Experiment

    Science.gov (United States)

    Davies, L.; Jakob, C.; Cheung, K.; DelGenio, A.; Hill, A.; Hume, T.; Keane, R. J.; Komori, T.; Larson, V. E.; Lin, Y.; hide

    2013-01-01

    Single-column models (SCM) are useful test beds for investigating the parameterization schemes of numerical weather prediction and climate models. The usefulness of SCM simulations are limited, however, by the accuracy of the best estimate large-scale observations prescribed. Errors estimating the observations will result in uncertainty in modeled simulations. One method to address the modeled uncertainty is to simulate an ensemble where the ensemble members span observational uncertainty. This study first derives an ensemble of large-scale data for the Tropical Warm Pool International Cloud Experiment (TWP-ICE) based on an estimate of a possible source of error in the best estimate product. These data are then used to carry out simulations with 11 SCM and two cloud-resolving models (CRM). Best estimate simulations are also performed. All models show that moisture-related variables are close to observations and there are limited differences between the best estimate and ensemble mean values. The models, however, show different sensitivities to changes in the forcing particularly when weakly forced. The ensemble simulations highlight important differences in the surface evaporation term of the moisture budget between the SCM and CRM. Differences are also apparent between the models in the ensemble mean vertical structure of cloud variables, while for each model, cloud properties are relatively insensitive to forcing. The ensemble is further used to investigate cloud variables and precipitation and identifies differences between CRM and SCM particularly for relationships involving ice. This study highlights the additional analysis that can be performed using ensemble simulations and hence enables a more complete model investigation compared to using the more traditional single best estimate simulation only.

  14. Embryo quality predictive models based on cumulus cells gene expression

    Directory of Open Access Journals (Sweden)

    Devjak R

    2016-06-01

    Full Text Available Since the introduction of in vitro fertilization (IVF in clinical practice of infertility treatment, the indicators for high quality embryos were investigated. Cumulus cells (CC have a specific gene expression profile according to the developmental potential of the oocyte they are surrounding, and therefore, specific gene expression could be used as a biomarker. The aim of our study was to combine more than one biomarker to observe improvement in prediction value of embryo development. In this study, 58 CC samples from 17 IVF patients were analyzed. This study was approved by the Republic of Slovenia National Medical Ethics Committee. Gene expression analysis [quantitative real time polymerase chain reaction (qPCR] for five genes, analyzed according to embryo quality level, was performed. Two prediction models were tested for embryo quality prediction: a binary logistic and a decision tree model. As the main outcome, gene expression levels for five genes were taken and the area under the curve (AUC for two prediction models were calculated. Among tested genes, AMHR2 and LIF showed significant expression difference between high quality and low quality embryos. These two genes were used for the construction of two prediction models: the binary logistic model yielded an AUC of 0.72 ± 0.08 and the decision tree model yielded an AUC of 0.73 ± 0.03. Two different prediction models yielded similar predictive power to differentiate high and low quality embryos. In terms of eventual clinical decision making, the decision tree model resulted in easy-to-interpret rules that are highly applicable in clinical practice.

  15. Understanding aerosol-cloud interactions in the development of orographic cumulus congestus during IPHEx

    Science.gov (United States)

    Barros, A. P.; Duan, Y.

    2017-12-01

    A new cloud parcel model (CPM) including activation, condensation, collision-coalescence, and lateral entrainment processes is presented here to investigate aerosol-cloud interactions (ACI) in cumulus development prior to rainfall onset. The CPM was employed along with ground based radar and surface aerosol measurements to predict the vertical structure of cloud formation at early stages and evaluated against airborne observations of cloud microphysics and thermodynamic conditions during the Integrated Precipitation and Hydrology Experiment (IPHEx) over the Southern Appalachian Mountains. Further, the CPM was applied to explore the space of ACI physical parameters controlling cumulus congestus growth not available from measurements, and to examine how variations in aerosol properties and microphysical processes influence the evolution and thermodynamic state of clouds over complex terrain via sensitivity analysis. Modeling results indicate that simulated spectra with a low value of condensation coefficient (0.01) are in good agreement with IPHEx aircraft observations around the same altitude. This is in contrast with high values reported in previous studies assuming adiabatic conditions. Entrainment is shown to govern the vertical development of clouds and the change of droplet numbers with height, and the sensitivity analysis suggests that there is a trade-off between entrainment strength and condensation process. Simulated CDNC also exhibits high sensitivity to variations in initial aerosol concentration at cloud base, but weak sensitivity to aerosol hygroscopicity. Exploratory multiple-parcel simulations capture realistic time-scales of vertical development of cumulus congestus (deeper clouds and faster droplet growth). These findings provide new insights into determinant factors of mid-day cumulus congestus formation that can explain a large fraction of warm season rainfall in mountainous regions.

  16. BMP15 Prevents Cumulus Cell Apoptosis Through CCL2 and FBN1 in Porcine Ovaries

    Directory of Open Access Journals (Sweden)

    Bo Zhai

    2013-07-01

    Full Text Available Background: Bone morphogenetic protein-15 (BMP15 is a maternal gene necessary for mammalian reproduction. BMP15 expression increased in oocytes accompanied by follicle growth and development. The function and regulation mechanism of BMP15 in porcine cumulus cell apoptosis process is still unclear now. Methods: In this study, flow cytometry (FCM was used to analyze the effects of BMP15 with different concentrations to cumulus cell apoptosis. High-throughput sequencing technology was carried out to screen regulatory genes linked closely with BMP15. In order to confirm the function of (MCP-1/CCL2 and FBN1 in cumulus cell apoptosis, RNA interference (RNAi method was used to inhibit the expression of (MCP-1/CCL2 and FBN1. Apoptosis and proliferation of cumulus cell treated with siRNA transfection technology were measured by FCM, 3-(4,5-dimethylthiazol-2-yl-2,5-diphenyltetrazolium bromide, quantitative real time-PCR (RT-qPCR and western blotting. Results: The results showed that the apoptosis levels of cumulus cell treated by BMP15 decreased significantly in a dose-dependent manner. The expression of related genes protein 1 (MCP-1/CCL2 and fibrillin1 (FBN1 were both regulated by BMP15. After transfection, the proliferation of porcine cumulus cells increased significantly and apoptosis of cumulus cells was prevented while FBN1 was silenced after BMP15 treatment. The proliferation of cumulus cells decreased significantly and apoptosis rate of cumulus cells increased significantly while CCL2 was silenced. Conclusion: The results obtained in this study firstly demonstrated that CCL2 and FBN1 are important regulatory factors of BMP15 in preventing cumulus cell apoptosis in porcine ovaries.

  17. Using synchronization in multi-model ensembles to improve prediction

    Science.gov (United States)

    Hiemstra, P.; Selten, F.

    2012-04-01

    In recent decades, many climate models have been developed to understand and predict the behavior of the Earth's climate system. Although these models are all based on the same basic physical principles, they still show different behavior. This is for example caused by the choice of how to parametrize sub-grid scale processes. One method to combine these imperfect models, is to run a multi-model ensemble. The models are given identical initial conditions and are integrated forward in time. A multi-model estimate can for example be a weighted mean of the ensemble members. We propose to go a step further, and try to obtain synchronization between the imperfect models by connecting the multi-model ensemble, and exchanging information. The combined multi-model ensemble is also known as a supermodel. The supermodel has learned from observations how to optimally exchange information between the ensemble members. In this study we focused on the density and formulation of the onnections within the supermodel. The main question was whether we could obtain syn-chronization between two climate models when connecting only a subset of their state spaces. Limiting the connected subspace has two advantages: 1) it limits the transfer of data (bytes) between the ensemble, which can be a limiting factor in large scale climate models, and 2) learning the optimal connection strategy from observations is easier. To answer the research question, we connected two identical quasi-geostrohic (QG) atmospheric models to each other, where the model have different initial conditions. The QG model is a qualitatively realistic simulation of the winter flow on the Northern hemisphere, has three layers and uses a spectral imple-mentation. We connected the models in the original spherical harmonical state space, and in linear combinations of these spherical harmonics, i.e. Empirical Orthogonal Functions (EOFs). We show that when connecting through spherical harmonics, we only need to connect 28% of

  18. Noodles: a tool for visualization of numerical weather model ensemble uncertainty.

    Science.gov (United States)

    Sanyal, Jibonananda; Zhang, Song; Dyer, Jamie; Mercer, Andrew; Amburn, Philip; Moorhead, Robert J

    2010-01-01

    Numerical weather prediction ensembles are routinely used for operational weather forecasting. The members of these ensembles are individual simulations with either slightly perturbed initial conditions or different model parameterizations, or occasionally both. Multi-member ensemble output is usually large, multivariate, and challenging to interpret interactively. Forecast meteorologists are interested in understanding the uncertainties associated with numerical weather prediction; specifically variability between the ensemble members. Currently, visualization of ensemble members is mostly accomplished through spaghetti plots of a single mid-troposphere pressure surface height contour. In order to explore new uncertainty visualization methods, the Weather Research and Forecasting (WRF) model was used to create a 48-hour, 18 member parameterization ensemble of the 13 March 1993 "Superstorm". A tool was designed to interactively explore the ensemble uncertainty of three important weather variables: water-vapor mixing ratio, perturbation potential temperature, and perturbation pressure. Uncertainty was quantified using individual ensemble member standard deviation, inter-quartile range, and the width of the 95% confidence interval. Bootstrapping was employed to overcome the dependence on normality in the uncertainty metrics. A coordinated view of ribbon and glyph-based uncertainty visualization, spaghetti plots, iso-pressure colormaps, and data transect plots was provided to two meteorologists for expert evaluation. They found it useful in assessing uncertainty in the data, especially in finding outliers in the ensemble run and therefore avoiding the WRF parameterizations that lead to these outliers. Additionally, the meteorologists could identify spatial regions where the uncertainty was significantly high, allowing for identification of poorly simulated storm environments and physical interpretation of these model issues.

  19. Modeling polydispersive ensembles of diamond nanoparticles

    International Nuclear Information System (INIS)

    Barnard, Amanda S

    2013-01-01

    While significant progress has been made toward production of monodispersed samples of a variety of nanoparticles, in cases such as diamond nanoparticles (nanodiamonds) a significant degree of polydispersivity persists, so scaling-up of laboratory applications to industrial levels has its challenges. In many cases, however, monodispersivity is not essential for reliable application, provided that the inevitable uncertainties are just as predictable as the functional properties. As computational methods of materials design are becoming more widespread, there is a growing need for robust methods for modeling ensembles of nanoparticles, that capture the structural complexity characteristic of real specimens. In this paper we present a simple statistical approach to modeling of ensembles of nanoparticles, and apply it to nanodiamond, based on sets of individual simulations that have been carefully selected to describe specific structural sources that are responsible for scattering of fundamental properties, and that are typically difficult to eliminate experimentally. For the purposes of demonstration we show how scattering in the Fermi energy and the electronic band gap are related to different structural variations (sources), and how these results can be combined strategically to yield statistically significant predictions of the properties of an entire ensemble of nanodiamonds, rather than merely one individual ‘model’ particle or a non-representative sub-set. (paper)

  20. Analyzing the impact of changing size and composition of a crop model ensemble

    Science.gov (United States)

    Rodríguez, Alfredo

    2017-04-01

    The use of an ensemble of crop growth simulation models is a practice recently adopted in order to quantify aspects of uncertainties in model simulations. Yet, while the climate modelling community has extensively investigated the properties of model ensembles and their implications, this has hardly been investigated for crop model ensembles (Wallach et al., 2016). In their ensemble of 27 wheat models, Martre et al. (2015) found that the accuracy of the multi-model ensemble-average only increases up to an ensemble size of ca. 10, but does not improve when including more models in the analysis. However, even when this number of members is reached, questions about the impact of the addition or removal of a member to/from the ensemble arise. When selecting ensemble members, identifying members with poor performance or giving implausible results can make a large difference on the outcome. The objective of this study is to set up a methodology that defines indicators to show the effects of changing the ensemble composition and size on simulation results, when a selection procedure of ensemble members is applied. Ensemble mean or median, and variance are measures used to depict ensemble results among other indicators. We are utilizing simulations from an ensemble of wheat models that have been used to construct impact response surfaces (Pirttioja et al., 2015) (IRSs). These show the response of an impact variable (e.g., crop yield) to systematic changes in two explanatory variables (e.g., precipitation and temperature). Using these, we compare different sub-ensembles in terms of the mean, median and spread, and also by comparing IRSs. The methodology developed here allows comparing an ensemble before and after applying any procedure that changes the ensemble composition and size by measuring the impact of this decision on the ensemble central tendency measures. The methodology could also be further developed to compare the effect of changing ensemble composition and size

  1. Improving wave forecasting by integrating ensemble modelling and machine learning

    Science.gov (United States)

    O'Donncha, F.; Zhang, Y.; James, S. C.

    2017-12-01

    Modern smart-grid networks use technologies to instantly relay information on supply and demand to support effective decision making. Integration of renewable-energy resources with these systems demands accurate forecasting of energy production (and demand) capacities. For wave-energy converters, this requires wave-condition forecasting to enable estimates of energy production. Current operational wave forecasting systems exhibit substantial errors with wave-height RMSEs of 40 to 60 cm being typical, which limits the reliability of energy-generation predictions thereby impeding integration with the distribution grid. In this study, we integrate physics-based models with statistical learning aggregation techniques that combine forecasts from multiple, independent models into a single "best-estimate" prediction of the true state. The Simulating Waves Nearshore physics-based model is used to compute wind- and currents-augmented waves in the Monterey Bay area. Ensembles are developed based on multiple simulations perturbing input data (wave characteristics supplied at the model boundaries and winds) to the model. A learning-aggregation technique uses past observations and past model forecasts to calculate a weight for each model. The aggregated forecasts are compared to observation data to quantify the performance of the model ensemble and aggregation techniques. The appropriately weighted ensemble model outperforms an individual ensemble member with regard to forecasting wave conditions.

  2. MVL spatiotemporal analysis for model intercomparison in EPS: application to the DEMETER multi-model ensemble

    Science.gov (United States)

    Fernández, J.; Primo, C.; Cofiño, A. S.; Gutiérrez, J. M.; Rodríguez, M. A.

    2009-08-01

    In a recent paper, Gutiérrez et al. (Nonlinear Process Geophys 15(1):109-114, 2008) introduced a new characterization of spatiotemporal error growth—the so called mean-variance logarithmic (MVL) diagram—and applied it to study ensemble prediction systems (EPS); in particular, they analyzed single-model ensembles obtained by perturbing the initial conditions. In the present work, the MVL diagram is applied to multi-model ensembles analyzing also the effect of model formulation differences. To this aim, the MVL diagram is systematically applied to the multi-model ensemble produced in the EU-funded DEMETER project. It is shown that the shared building blocks (atmospheric and ocean components) impose similar dynamics among different models and, thus, contribute to poorly sampling the model formulation uncertainty. This dynamical similarity should be taken into account, at least as a pre-screening process, before applying any objective weighting method.

  3. Entrainment in Laboratory Simulations of Cumulus Cloud Flows

    Science.gov (United States)

    Narasimha, R.; Diwan, S.; Subrahmanyam, D.; Sreenivas, K. R.; Bhat, G. S.

    2010-12-01

    A variety of cumulus cloud flows, including congestus (both shallow bubble and tall tower types), mediocris and fractus have been generated in a water tank by simulating the release of latent heat in real clouds. The simulation is achieved through ohmic heating, injected volumetrically into the flow by applying suitable voltages between diametral cross-sections of starting jets and plumes of electrically conducting fluid (acidified water). Dynamical similarity between atmospheric and laboratory cloud flows is achieved by duplicating values of an appropriate non-dimensional heat release number. Velocity measurements, made by laser instrumentation, show that the Taylor entrainment coefficient generally increases just above the level of commencement of heat injection (corresponding to condensation level in the real cloud). Subsequently the coefficient reaches a maximum before declining to the very low values that characterize tall cumulus towers. The experiments also simulate the protected core of real clouds. Cumulus Congestus : Atmospheric cloud (left), simulated laboratory cloud (right). Panels below show respectively total heat injected and vertical profile of heating in the laboratory cloud.

  4. Model dependence and its effect on ensemble projections in CMIP5

    Science.gov (United States)

    Abramowitz, G.; Bishop, C.

    2013-12-01

    Conceptually, the notion of model dependence within climate model ensembles is relatively simple - modelling groups share a literature base, parametrisations, data sets and even model code - the potential for dependence in sampling different climate futures is clear. How though can this conceptual problem inform a practical solution that demonstrably improves the ensemble mean and ensemble variance as an estimate of system uncertainty? While some research has already focused on error correlation or error covariance as a candidate to improve ensemble mean estimates, a complete definition of independence must at least implicitly subscribe to an ensemble interpretation paradigm, such as the 'truth-plus-error', 'indistinguishable', or more recently 'replicate Earth' paradigm. Using a definition of model dependence based on error covariance within the replicate Earth paradigm, this presentation will show that accounting for dependence in surface air temperature gives cooler projections in CMIP5 - by as much as 20% globally in some RCPs - although results differ significantly for each RCP, especially regionally. The fact that the change afforded by accounting for dependence across different RCPs is different is not an inconsistent result. Different numbers of submissions to each RCP by different modelling groups mean that differences in projections from different RCPs are not entirely about RCP forcing conditions - they also reflect different sampling strategies.

  5. Effect of intraovarian factors on porcine follicular cells: cumulus expansion, granulosa and cumulus cell progesterone production

    Czech Academy of Sciences Publication Activity Database

    Ježová, M.; Scsuková, S.; Nagyová, Eva; Vranová, J.; Procházka, Radek; Kolena, J.

    2001-01-01

    Roč. 65, - (2001), s. 115-126 ISSN 0378-4320 R&D Projects: GA ČR GA524/98/0231; GA AV ČR KSK5052113 Keywords : pig-ovary * cumulus expansion * luteinization stimulator Subject RIV: EB - Genetics ; Molecular Biology Impact factor: 1.196, year: 2001

  6. Ensemble Kinetic Modeling of Metabolic Networks from Dynamic Metabolic Profiles

    Directory of Open Access Journals (Sweden)

    Gengjie Jia

    2012-11-01

    Full Text Available Kinetic modeling of metabolic pathways has important applications in metabolic engineering, but significant challenges still remain. The difficulties faced vary from finding best-fit parameters in a highly multidimensional search space to incomplete parameter identifiability. To meet some of these challenges, an ensemble modeling method is developed for characterizing a subset of kinetic parameters that give statistically equivalent goodness-of-fit to time series concentration data. The method is based on the incremental identification approach, where the parameter estimation is done in a step-wise manner. Numerical efficacy is achieved by reducing the dimensionality of parameter space and using efficient random parameter exploration algorithms. The shift toward using model ensembles, instead of the traditional “best-fit” models, is necessary to directly account for model uncertainty during the application of such models. The performance of the ensemble modeling approach has been demonstrated in the modeling of a generic branched pathway and the trehalose pathway in Saccharomyces cerevisiae using generalized mass action (GMA kinetics.

  7. Multimodel Ensembles of Wheat Growth: Many Models are Better than One

    Science.gov (United States)

    Martre, Pierre; Wallach, Daniel; Asseng, Senthold; Ewert, Frank; Jones, James W.; Rotter, Reimund P.; Boote, Kenneth J.; Ruane, Alexander C.; Thorburn, Peter J.; Cammarano, Davide; hide

    2015-01-01

    Crop models of crop growth are increasingly used to quantify the impact of global changes due to climate or crop management. Therefore, accuracy of simulation results is a major concern. Studies with ensembles of crop model scan give valuable information about model accuracy and uncertainty, but such studies are difficult to organize and have only recently begun. We report on the largest ensemble study to date, of 27 wheat models tested in four contrasting locations for their accuracy in simulating multiple crop growth and yield variables. The relative error averaged over models was 2438 for the different end-of-season variables including grain yield (GY) and grain protein concentration (GPC). There was little relation between error of a model for GY or GPC and error for in-season variables. Thus, most models did not arrive at accurate simulations of GY and GPC by accurately simulating preceding growth dynamics. Ensemble simulations, taking either the mean (e-mean) or median (e-median) of simulated values, gave better estimates than any individual model when all variables were considered. Compared to individual models, e-median ranked first in simulating measured GY and third in GPC. The error of e-mean and e-median declined with an increasing number of ensemble members, with little decrease beyond 10 models. We conclude that multimodel ensembles can be used to create new estimators with improved accuracy and consistency in simulating growth dynamics. We argue that these results are applicable to other crop species, and hypothesize that they apply more generally to ecological system models.

  8. Multimodel Ensembles of Wheat Growth: More Models are Better than One

    Science.gov (United States)

    Martre, Pierre; Wallach, Daniel; Asseng, Senthold; Ewert, Frank; Jones, James W.; Rotter, Reimund P.; Boote, Kenneth J.; Ruane, Alex C.; Thorburn, Peter J.; Cammarano, Davide; hide

    2015-01-01

    Crop models of crop growth are increasingly used to quantify the impact of global changes due to climate or crop management. Therefore, accuracy of simulation results is a major concern. Studies with ensembles of crop models can give valuable information about model accuracy and uncertainty, but such studies are difficult to organize and have only recently begun. We report on the largest ensemble study to date, of 27 wheat models tested in four contrasting locations for their accuracy in simulating multiple crop growth and yield variables. The relative error averaged over models was 24-38% for the different end-of-season variables including grain yield (GY) and grain protein concentration (GPC). There was little relation between error of a model for GY or GPC and error for in-season variables. Thus, most models did not arrive at accurate simulations of GY and GPC by accurately simulating preceding growth dynamics. Ensemble simulations, taking either the mean (e-mean) or median (e-median) of simulated values, gave better estimates than any individual model when all variables were considered. Compared to individual models, e-median ranked first in simulating measured GY and third in GPC. The error of e-mean and e-median declined with an increasing number of ensemble members, with little decrease beyond 10 models. We conclude that multimodel ensembles can be used to create new estimators with improved accuracy and consistency in simulating growth dynamics. We argue that these results are applicable to other crop species, and hypothesize that they apply more generally to ecological system models.

  9. Early Detection of Rapidly Developing Cumulus Area using HIMAWARI-8

    Science.gov (United States)

    Yamada, Y.; Kadosaki, G.

    2017-12-01

    In recent years, many disasters have been occured by influence of meteorological change in Japan. So, it becomes more important to inform rapid weather change caused by cumulus which brings concentrated heavy rain/hail, wind gust, lightning in a short period. These severe events should inclease in the future by global warming. Therefore we are developping the alert system for Rapidly Developing Cumulus Area (RDCA) detection using Japanese new satellite. At July 2015, Japan Meteorological Agency started operation of new geostationary meteorological satellite "Himawari-8". This satellite has optical imager named Advanced Himawari Imager (AHI). It can observe Japan area every 2.5 minutes. The frequently infrared image with high resolution (2km) is the key of our alert system. We took some special functions in the algorithm of this system. One of the points is cloud location which shifts to north from true location around Japan by viewing angle from the satellite above the equator. We moved clouds to the correct position using geometric correction method according to its height and latitude. This algorithm also follows a movement of cloud every 2.5 minutes during several observations. It derives the information about degree of the development of cumulus. The prototype system gives the alert before 30 to 60 minutes in advance to the first lightning in typical cumulus case. However, we understand that there are some difficult cases to alert. For example, winter low cloud over the Japan Sea which brings a winter lightning, and tornado (although it is not cumulus). Now, we are adjusting some parameters of the algorithm. In the near future, our algorithm will be used in weather information delivery service to the customer.

  10. Continuous growth of cloud droplets in cumulus cloud

    International Nuclear Information System (INIS)

    Gotoh, Toshiyuki; Suehiro, Tamotsu; Saito, Izumi

    2016-01-01

    A new method to seamlessly simulate the continuous growth of droplets advected by turbulent flow inside a cumulus cloud was developed from first principle. A cubic box ascending with a mean updraft inside a cumulus cloud was introduced and the updraft velocity was self-consistently determined in such a way that the mean turbulent velocity within the box vanished. All the degrees of freedom of the cloud droplets and turbulence fields were numerically integrated. The box ascended quickly inside the cumulus cloud due to the updraft and the mean radius of the droplets grew from 10 to 24 μ m for about 10 min. The turbulent flow tended to slow down the time evolutions of the updraft velocity, the box altitude and the mean cloud droplet radius. The size distribution of the cloud droplets in the updraft case was narrower than in the absence of the updraft. It was also found that the wavenumeber spectra of the variances of the temperature and water vapor mixing ratio were nearly constant in the low wavenumber range. The future development of the new method was argued. (paper)

  11. Single-particle model of a strongly driven, dense, nanoscale quantum ensemble

    Science.gov (United States)

    DiLoreto, C. S.; Rangan, C.

    2018-01-01

    We study the effects of interatomic interactions on the quantum dynamics of a dense, nanoscale, atomic ensemble driven by a strong electromagnetic field. We use a self-consistent, mean-field technique based on the pseudospectral time-domain method and a full, three-directional basis to solve the coupled Maxwell-Liouville equations. We find that interatomic interactions generate a decoherence in the state of an ensemble on a much faster time scale than the excited-state lifetime of individual atoms. We present a single-particle model of the driven, dense ensemble by incorporating interactions into a dephasing rate. This single-particle model reproduces the essential physics of the full simulation and is an efficient way of rapidly estimating the collective dynamics of a dense ensemble.

  12. Ensemble streamflow assimilation with the National Water Model.

    Science.gov (United States)

    Rafieeinasab, A.; McCreight, J. L.; Noh, S.; Seo, D. J.; Gochis, D.

    2017-12-01

    Through case studies of flooding across the US, we compare the performance of the National Water Model (NWM) data assimilation (DA) scheme to that of a newly implemented ensemble Kalman filter approach. The NOAA National Water Model (NWM) is an operational implementation of the community WRF-Hydro modeling system. As of August 2016, the NWM forecasts of distributed hydrologic states and fluxes (including soil moisture, snowpack, ET, and ponded water) over the contiguous United States have been publicly disseminated by the National Center for Environmental Prediction (NCEP) . It also provides streamflow forecasts at more than 2.7 million river reaches up to 30 days in advance. The NWM employs a nudging scheme to assimilate more than 6,000 USGS streamflow observations and provide initial conditions for its forecasts. A problem with nudging is how the forecasts relax quickly to open-loop bias in the forecast. This has been partially addressed by an experimental bias correction approach which was found to have issues with phase errors during flooding events. In this work, we present an ensemble streamflow data assimilation approach combining new channel-only capabilities of the NWM and HydroDART (a coupling of the offline WRF-Hydro model and NCAR's Data Assimilation Research Testbed; DART). Our approach focuses on the single model state of discharge and incorporates error distributions on channel-influxes (overland and groundwater) in the assimilation via an ensemble Kalman filter (EnKF). In order to avoid filter degeneracy associated with a limited number of ensemble at large scale, DART's covariance inflation (Anderson, 2009) and localization capabilities are implemented and evaluated. The current NWM data assimilation scheme is compared to preliminary results from the EnKF application for several flooding case studies across the US.

  13. Multi-criterion model ensemble of CMIP5 surface air temperature over China

    Science.gov (United States)

    Yang, Tiantian; Tao, Yumeng; Li, Jingjing; Zhu, Qian; Su, Lu; He, Xiaojia; Zhang, Xiaoming

    2018-05-01

    The global circulation models (GCMs) are useful tools for simulating climate change, projecting future temperature changes, and therefore, supporting the preparation of national climate adaptation plans. However, different GCMs are not always in agreement with each other over various regions. The reason is that GCMs' configurations, module characteristics, and dynamic forcings vary from one to another. Model ensemble techniques are extensively used to post-process the outputs from GCMs and improve the variability of model outputs. Root-mean-square error (RMSE), correlation coefficient (CC, or R) and uncertainty are commonly used statistics for evaluating the performances of GCMs. However, the simultaneous achievements of all satisfactory statistics cannot be guaranteed in using many model ensemble techniques. In this paper, we propose a multi-model ensemble framework, using a state-of-art evolutionary multi-objective optimization algorithm (termed MOSPD), to evaluate different characteristics of ensemble candidates and to provide comprehensive trade-off information for different model ensemble solutions. A case study of optimizing the surface air temperature (SAT) ensemble solutions over different geographical regions of China is carried out. The data covers from the period of 1900 to 2100, and the projections of SAT are analyzed with regard to three different statistical indices (i.e., RMSE, CC, and uncertainty). Among the derived ensemble solutions, the trade-off information is further analyzed with a robust Pareto front with respect to different statistics. The comparison results over historical period (1900-2005) show that the optimized solutions are superior over that obtained simple model average, as well as any single GCM output. The improvements of statistics are varying for different climatic regions over China. Future projection (2006-2100) with the proposed ensemble method identifies that the largest (smallest) temperature changes will happen in the

  14. Melatonin-Mediated Development of Ovine Cumulus Cells, Perhaps by Regulation of DNA Methylation

    Directory of Open Access Journals (Sweden)

    Yi Fang

    2018-02-01

    Full Text Available Cumulus cells of pre-pubertal domestic animals are dysfunctional, perhaps due to age-specific epigenetic events. This study was designed to determine effects of melatonin treatment of donors on methylation modification of pre-pubertal cumulus cells. Cumulus cells from germinal vesicle stage cumulus oocyte complexes (COCs were collected from eighteen lambs which were randomly divided into control group (C and melatonin group given an 18 mg melatonin implant subcutaneous (M. Compared to the C group, the M group had higher concentrations of melatonin in plasma and follicular fluid (p < 0.05, greater superovulation, a higher proportion of fully expanded COCs, and a lower proportion of apoptotic cumulus cells (p < 0.05. Real-time PCR results showed that melatonin up-regulated expression of genes MT1, Bcl2, DNMT1, DNMT3a and DNMT3b, but down-regulated expression of genes p53, Caspase 3 and Bax (p < 0.05. Furthermore, melatonin increased FI of FITC (global methylation level on cumulus cells (p < 0.05. To understand the regulation mechanism, the DNMTs promoter methylation sequence were analyzed. Compared to the C group, although there was less methylation at two CpG sites of DNMT1 (p < 0.05 and higher methylation at two CpG sites of DNMT3a (p < 0.05, there were no significant differences in methylation of the detected DNMT1 and DNMT3a promoter regions. However, there were lower methylation levels at five CpG sites of DNMT3b, which decreased methylation of detected DNMT3b promoter region on M group (p < 0.05. In conclusion, alterations of methylation regulated by melatonin may mediate development of cumulus cells in lambs.

  15. Improved ensemble-mean forecast skills of ENSO events by a zero-mean stochastic model-error model of an intermediate coupled model

    Science.gov (United States)

    Zheng, F.; Zhu, J.

    2015-12-01

    To perform an ensemble-based ENSO probabilistic forecast, the crucial issue is to design a reliable ensemble prediction strategy that should include the major uncertainties of a forecast system. In this study, we developed a new general ensemble perturbation technique to improve the ensemble-mean predictive skill of forecasting ENSO using an intermediate coupled model (ICM). The model uncertainties are first estimated and analyzed from EnKF analysis results through assimilating observed SST. Then, based on the pre-analyzed properties of the model errors, a zero-mean stochastic model-error model is developed to mainly represent the model uncertainties induced by some important physical processes missed in the coupled model (i.e., stochastic atmospheric forcing/MJO, extra-tropical cooling and warming, Indian Ocean Dipole mode, etc.). Each member of an ensemble forecast is perturbed by the stochastic model-error model at each step during the 12-month forecast process, and the stochastical perturbations are added into the modeled physical fields to mimic the presence of these high-frequency stochastic noises and model biases and their effect on the predictability of the coupled system. The impacts of stochastic model-error perturbations on ENSO deterministic predictions are examined by performing two sets of 21-yr retrospective forecast experiments. The two forecast schemes are differentiated by whether they considered the model stochastic perturbations, with both initialized by the ensemble-mean analysis states from EnKF. The comparison results suggest that the stochastic model-error perturbations have significant and positive impacts on improving the ensemble-mean prediction skills during the entire 12-month forecast process. Because the nonlinear feature of the coupled model can induce the nonlinear growth of the added stochastic model errors with model integration, especially through the nonlinear heating mechanism with the vertical advection term of the model, the

  16. Biological ensemble modeling to evaluate potential futures of living marine resources

    DEFF Research Database (Denmark)

    Gårdmark, Anna; Lindegren, Martin; Neuenfeldt, Stefan

    2013-01-01

    ) as an example. The core of the approach is to expose an ensemble of models with different ecological assumptions to climate forcing, using multiple realizations of each climate scenario. We simulated the long-term response of cod to future fishing and climate change in seven ecological models ranging from...... model assumptions from the statistical uncertainty of future climate, and (3) identified results common for the whole model ensemble. Species interactions greatly influenced the simulated response of cod to fishing and climate, as well as the degree to which the statistical uncertainty of climate...... in all models, intense fishing prevented recovery, and climate change further decreased the cod population. Our study demonstrates how the biological ensemble modeling approach makes it possible to evaluate the relative importance of different sources of uncertainty in future species responses, as well...

  17. Laboratory simulations show diabatic heating drives cumulus-cloud evolution and entrainment

    Science.gov (United States)

    Narasimha, Roddam; Diwan, Sourabh Suhas; Duvvuri, Subrahmanyam; Sreenivas, K. R.; Bhat, G. S.

    2011-01-01

    Clouds are the largest source of uncertainty in climate science, and remain a weak link in modeling tropical circulation. A major challenge is to establish connections between particulate microphysics and macroscale turbulent dynamics in cumulus clouds. Here we address the issue from the latter standpoint. First we show how to create bench-scale flows that reproduce a variety of cumulus-cloud forms (including two genera and three species), and track complete cloud life cycles—e.g., from a “cauliflower” congestus to a dissipating fractus. The flow model used is a transient plume with volumetric diabatic heating scaled dynamically to simulate latent-heat release from phase changes in clouds. Laser-based diagnostics of steady plumes reveal Riehl–Malkus type protected cores. They also show that, unlike the constancy implied by early self-similar plume models, the diabatic heating raises the Taylor entrainment coefficient just above cloud base, depressing it at higher levels. This behavior is consistent with cloud-dilution rates found in recent numerical simulations of steady deep convection, and with aircraft-based observations of homogeneous mixing in clouds. In-cloud diabatic heating thus emerges as the key driver in cloud development, and could well provide a major link between microphysics and cloud-scale dynamics. PMID:21918112

  18. Modelling machine ensembles with discrete event dynamical system theory

    Science.gov (United States)

    Hunter, Dan

    1990-01-01

    Discrete Event Dynamical System (DEDS) theory can be utilized as a control strategy for future complex machine ensembles that will be required for in-space construction. The control strategy involves orchestrating a set of interactive submachines to perform a set of tasks for a given set of constraints such as minimum time, minimum energy, or maximum machine utilization. Machine ensembles can be hierarchically modeled as a global model that combines the operations of the individual submachines. These submachines are represented in the global model as local models. Local models, from the perspective of DEDS theory , are described by the following: a set of system and transition states, an event alphabet that portrays actions that takes a submachine from one state to another, an initial system state, a partial function that maps the current state and event alphabet to the next state, and the time required for the event to occur. Each submachine in the machine ensemble is presented by a unique local model. The global model combines the local models such that the local models can operate in parallel under the additional logistic and physical constraints due to submachine interactions. The global model is constructed from the states, events, event functions, and timing requirements of the local models. Supervisory control can be implemented in the global model by various methods such as task scheduling (open-loop control) or implementing a feedback DEDS controller (closed-loop control).

  19. Post-processing of multi-model ensemble river discharge forecasts using censored EMOS

    Science.gov (United States)

    Hemri, Stephan; Lisniak, Dmytro; Klein, Bastian

    2014-05-01

    When forecasting water levels and river discharge, ensemble weather forecasts are used as meteorological input to hydrologic process models. As hydrologic models are imperfect and the input ensembles tend to be biased and underdispersed, the output ensemble forecasts for river runoff typically are biased and underdispersed, too. Thus, statistical post-processing is required in order to achieve calibrated and sharp predictions. Standard post-processing methods such as Ensemble Model Output Statistics (EMOS) that have their origins in meteorological forecasting are now increasingly being used in hydrologic applications. Here we consider two sub-catchments of River Rhine, for which the forecasting system of the Federal Institute of Hydrology (BfG) uses runoff data that are censored below predefined thresholds. To address this methodological challenge, we develop a censored EMOS method that is tailored to such data. The censored EMOS forecast distribution can be understood as a mixture of a point mass at the censoring threshold and a continuous part based on a truncated normal distribution. Parameter estimates of the censored EMOS model are obtained by minimizing the Continuous Ranked Probability Score (CRPS) over the training dataset. Model fitting on Box-Cox transformed data allows us to take account of the positive skewness of river discharge distributions. In order to achieve realistic forecast scenarios over an entire range of lead-times, there is a need for multivariate extensions. To this end, we smooth the marginal parameter estimates over lead-times. In order to obtain realistic scenarios of discharge evolution over time, the marginal distributions have to be linked with each other. To this end, the multivariate dependence structure can either be adopted from the raw ensemble like in Ensemble Copula Coupling (ECC), or be estimated from observations in a training period. The censored EMOS model has been applied to multi-model ensemble forecasts issued on a

  20. An ensemble model of QSAR tools for regulatory risk assessment.

    Science.gov (United States)

    Pradeep, Prachi; Povinelli, Richard J; White, Shannon; Merrill, Stephen J

    2016-01-01

    Quantitative structure activity relationships (QSARs) are theoretical models that relate a quantitative measure of chemical structure to a physical property or a biological effect. QSAR predictions can be used for chemical risk assessment for protection of human and environmental health, which makes them interesting to regulators, especially in the absence of experimental data. For compatibility with regulatory use, QSAR models should be transparent, reproducible and optimized to minimize the number of false negatives. In silico QSAR tools are gaining wide acceptance as a faster alternative to otherwise time-consuming clinical and animal testing methods. However, different QSAR tools often make conflicting predictions for a given chemical and may also vary in their predictive performance across different chemical datasets. In a regulatory context, conflicting predictions raise interpretation, validation and adequacy concerns. To address these concerns, ensemble learning techniques in the machine learning paradigm can be used to integrate predictions from multiple tools. By leveraging various underlying QSAR algorithms and training datasets, the resulting consensus prediction should yield better overall predictive ability. We present a novel ensemble QSAR model using Bayesian classification. The model allows for varying a cut-off parameter that allows for a selection in the desirable trade-off between model sensitivity and specificity. The predictive performance of the ensemble model is compared with four in silico tools (Toxtree, Lazar, OECD Toolbox, and Danish QSAR) to predict carcinogenicity for a dataset of air toxins (332 chemicals) and a subset of the gold carcinogenic potency database (480 chemicals). Leave-one-out cross validation results show that the ensemble model achieves the best trade-off between sensitivity and specificity (accuracy: 83.8 % and 80.4 %, and balanced accuracy: 80.6 % and 80.8 %) and highest inter-rater agreement [kappa ( κ ): 0

  1. A new ensemble model for short term wind power prediction

    DEFF Research Database (Denmark)

    Madsen, Henrik; Albu, Razvan-Daniel; Felea, Ioan

    2012-01-01

    As the objective of this study, a non-linear ensemble system is used to develop a new model for predicting wind speed in short-term time scale. Short-term wind power prediction becomes an extremely important field of research for the energy sector. Regardless of the recent advancements in the re-search...... of prediction models, it was observed that different models have different capabilities and also no single model is suitable under all situations. The idea behind EPS (ensemble prediction systems) is to take advantage of the unique features of each subsystem to detain diverse patterns that exist in the dataset...

  2. Visualizing projected Climate Changes - the CMIP5 Multi-Model Ensemble

    Science.gov (United States)

    Böttinger, Michael; Eyring, Veronika; Lauer, Axel; Meier-Fleischer, Karin

    2017-04-01

    Large ensembles add an additional dimension to climate model simulations. Internal variability of the climate system can be assessed for example by multiple climate model simulations with small variations in the initial conditions or by analyzing the spread in large ensembles made by multiple climate models under common protocols. This spread is often used as a measure of uncertainty in climate projections. In the context of the fifth phase of the WCRP's Coupled Model Intercomparison Project (CMIP5), more than 40 different coupled climate models were employed to carry out a coordinated set of experiments. Time series of the development of integral quantities such as the global mean temperature change for all models visualize the spread in the multi-model ensemble. A similar approach can be applied to 2D-visualizations of projected climate changes such as latitude-longitude maps showing the multi-model mean of the ensemble by adding a graphical representation of the uncertainty information. This has been demonstrated for example with static figures in chapter 12 of the last IPCC report (AR5) using different so-called stippling and hatching techniques. In this work, we focus on animated visualizations of multi-model ensemble climate projections carried out within CMIP5 as a way of communicating climate change results to the scientific community as well as to the public. We take a closer look at measures of robustness or uncertainty used in recent publications suitable for animated visualizations. Specifically, we use the ESMValTool [1] to process and prepare the CMIP5 multi-model data in combination with standard visualization tools such as NCL and the commercial 3D visualization software Avizo to create the animations. We compare different visualization techniques such as height fields or shading with transparency for creating animated visualization of ensemble mean changes in temperature and precipitation including corresponding robustness measures. [1] Eyring, V

  3. MACC regional multi-model ensemble simulations of birch pollen dispersion in Europe

    NARCIS (Netherlands)

    Sofiev, M.; Berger, U.; Prank, M.; Vira, J.; Arteta, J.; Belmonte, J.; Bergmann, K.C.; Chéroux, F.; Elbern, H.; Friese, E.; Galan, C.; Gehrig, R.; Khvorostyanov, D.; Kranenburg, R.; Kumar, U.; Marécal, V.; Meleux, F.; Menut, L.; Pessi, A.M.; Robertson, L.; Ritenberga, O.; Rodinkova, V.; Saarto, A.; Segers, A.; Severova, E.; Sauliene, I.; Siljamo, P.; Steensen, B.M.; Teinemaa, E.; Thibaudon, M.; Peuch, V.H.

    2015-01-01

    This paper presents the first ensemble modelling experiment in relation to birch pollen in Europe. The seven-model European ensemble of MACC-ENS, tested in trial simulations over the flowering season of 2010, was run through the flowering season of 2013. The simulations have been compared with

  4. Dynamic Metabolic Model Building Based on the Ensemble Modeling Approach

    Energy Technology Data Exchange (ETDEWEB)

    Liao, James C. [Univ. of California, Los Angeles, CA (United States)

    2016-10-01

    Ensemble modeling of kinetic systems addresses the challenges of kinetic model construction, with respect to parameter value selection, and still allows for the rich insights possible from kinetic models. This project aimed to show that constructing, implementing, and analyzing such models is a useful tool for the metabolic engineering toolkit, and that they can result in actionable insights from models. Key concepts are developed and deliverable publications and results are presented.

  5. Effect of Acrylamide on Oocyte Nuclear Maturation and Cumulus Cells Apoptosis in Mouse In Vitro.

    Directory of Open Access Journals (Sweden)

    Shuzhen Liu

    Full Text Available Acrylamide (ACR is a chemical compound with severe neurotoxicity, genotoxicity, carcinogenicity and reproductive toxicity. Recent studies showed that ACR impairs the function of reproductive organs, e.g., epididymis and testes. In vitro maturation of mouse oocyte is a sensitive assay to identify potential chemical hazard to female fertility. The aim of this study was to evaluate the adverse effects of ACR on the nuclear maturation and cumulus cells apoptosis of mouse oocytes in vitro. Cumulus-oocyte complexes were incubated in a maturation medium containing 0, 5, 10 and 20 μM of ACR. Chromosome alignment and spindle morphology of oocytes was determined by immunofluorescence and confocal microscopy. Our results showed that oocytes exposed to different doses of ACR in vitro were associated with a significant decrease of oocyte maturation, significant increase of chromosome misalignment rate, occurrence of abnormal spindle configurations, and the inhibition of oocyte parthenogenetic activation. Furthermore, apoptosis of cumulus cells was determined by TUNEL and CASPASE-3 assay. Results showed that apoptosis in cumulus cells was enhanced and the expression of CASPASE-3 was increased after cumulus-oocyte complexes were exposed to ACR. Therefore, ACR may affect the nuclear maturation of oocytes via the apoptosis of cumulus cells in vitro.

  6. Ensemble bayesian model averaging using markov chain Monte Carlo sampling

    Energy Technology Data Exchange (ETDEWEB)

    Vrugt, Jasper A [Los Alamos National Laboratory; Diks, Cees G H [NON LANL; Clark, Martyn P [NON LANL

    2008-01-01

    Bayesian model averaging (BMA) has recently been proposed as a statistical method to calibrate forecast ensembles from numerical weather models. Successful implementation of BMA however, requires accurate estimates of the weights and variances of the individual competing models in the ensemble. In their seminal paper (Raftery etal. Mon Weather Rev 133: 1155-1174, 2(05)) has recommended the Expectation-Maximization (EM) algorithm for BMA model training, even though global convergence of this algorithm cannot be guaranteed. In this paper, we compare the performance of the EM algorithm and the recently developed Differential Evolution Adaptive Metropolis (DREAM) Markov Chain Monte Carlo (MCMC) algorithm for estimating the BMA weights and variances. Simulation experiments using 48-hour ensemble data of surface temperature and multi-model stream-flow forecasts show that both methods produce similar results, and that their performance is unaffected by the length of the training data set. However, MCMC simulation with DREAM is capable of efficiently handling a wide variety of BMA predictive distributions, and provides useful information about the uncertainty associated with the estimated BMA weights and variances.

  7. Combining multi-objective optimization and bayesian model averaging to calibrate forecast ensembles of soil hydraulic models

    Energy Technology Data Exchange (ETDEWEB)

    Vrugt, Jasper A [Los Alamos National Laboratory; Wohling, Thomas [NON LANL

    2008-01-01

    Most studies in vadose zone hydrology use a single conceptual model for predictive inference and analysis. Focusing on the outcome of a single model is prone to statistical bias and underestimation of uncertainty. In this study, we combine multi-objective optimization and Bayesian Model Averaging (BMA) to generate forecast ensembles of soil hydraulic models. To illustrate our method, we use observed tensiometric pressure head data at three different depths in a layered vadose zone of volcanic origin in New Zealand. A set of seven different soil hydraulic models is calibrated using a multi-objective formulation with three different objective functions that each measure the mismatch between observed and predicted soil water pressure head at one specific depth. The Pareto solution space corresponding to these three objectives is estimated with AMALGAM, and used to generate four different model ensembles. These ensembles are post-processed with BMA and used for predictive analysis and uncertainty estimation. Our most important conclusions for the vadose zone under consideration are: (1) the mean BMA forecast exhibits similar predictive capabilities as the best individual performing soil hydraulic model, (2) the size of the BMA uncertainty ranges increase with increasing depth and dryness in the soil profile, (3) the best performing ensemble corresponds to the compromise (or balanced) solution of the three-objective Pareto surface, and (4) the combined multi-objective optimization and BMA framework proposed in this paper is very useful to generate forecast ensembles of soil hydraulic models.

  8. With or without a conductor: Comparative analysis of leadership models in the musical ensemble

    Directory of Open Access Journals (Sweden)

    Kovačević Mia

    2016-01-01

    Full Text Available In search of innovative models of work organization and therefore the artistic process of one musical ensemble, in the last ten years musical ensembles have developed examples of non-traditional artistic-performing decisions and organizational practice. The paper is conceived as a research and analysis of the dominant models of leadership (i.e. organizing, conducting business applicable on the music ensembles and experiences of the musicians. The aim is to recognize and define leadership styles that encourage the increase of motivation and productivity of musicians within the musical ensemble. The paper will specifically investigate the relationship and differences between the two dominant models of leadership, leadership of conductor and collaborative leadership. At the same time, the paper describes and analyses an experiment that was conducted by the Ensemble Metamorphosis, which applied into their work two dominant models of leadership. In an effort to increase the motivation and productivity of musicians, Ensemble Metamorphosis also searched for a new management model of work organization and a new model of leadership. The aim of this paper was therefore to investigate the effects of leadership models that improve the artistic quality, motivation of the musicians, psychological climate and overall increase productivity of musical organization.

  9. Cumulus expansion, nuclear maturation and connexin 43, cyclooxygenase-2 and FSH receptor mRNA expression in equine cumulus-oocyte complexes cultured in vitro in the presence of FSH and precursors for hyaluronic acid synthesis

    Directory of Open Access Journals (Sweden)

    Aiudi Giulio

    2004-06-01

    Full Text Available Abstract The aim of this study was to investigate cumulus expansion, nuclear maturation and expression of connexin 43, cyclooxygenase-2 and FSH receptor transcripts in equine cumuli oophori during in vivo and in vitro maturation in the presence of equine FSH (eFSH and precursors for hyaluronic acid synthesis. Equine cumulus-oocyte complexes (COC were cultured in a control defined medium supplemented with eFSH (0 to 5 micrograms/ml, Fetal Calf Serum (FCS, precursors for hyaluronic acid synthesis or glutamine according to the experiments. After in vitro maturation, the cumulus expansion rate was increased with 1 microgram/ml eFSH, and was the highest with 20% FCS. It was not influenced by precursors for hyaluronic acid synthesis or glutamine. The expression of transcripts related to cumulus expansion was analyzed in equine cumulus cells before maturation, and after in vivo and in vitro maturation, by using reverse transcription-polymerase chain reaction (RT-PCR with specific primers. Connexin 43, cyclooxygenase-2 (COX-2 and FSH receptor (FSHr mRNA were detected in equine cumulus cells before and after maturation. Their level did not vary during in vivo or in vitro maturation and was influenced neither by FSH nor by precursors for hyaluronic acid synthesis. Results indicate that previously reported regulation of connexin 43 and COX-2 proteins during equine COC maturation may involve post-transcriptional mechanisms.

  10. Dispersion Modeling Using Ensemble Forecasts Compared to ETEX Measurements.

    Science.gov (United States)

    Straume, Anne Grete; N'dri Koffi, Ernest; Nodop, Katrin

    1998-11-01

    Numerous numerical models are developed to predict long-range transport of hazardous air pollution in connection with accidental releases. When evaluating and improving such a model, it is important to detect uncertainties connected to the meteorological input data. A Lagrangian dispersion model, the Severe Nuclear Accident Program, is used here to investigate the effect of errors in the meteorological input data due to analysis error. An ensemble forecast, produced at the European Centre for Medium-Range Weather Forecasts, is then used as model input. The ensemble forecast members are generated by perturbing the initial meteorological fields of the weather forecast. The perturbations are calculated from singular vectors meant to represent possible forecast developments generated by instabilities in the atmospheric flow during the early part of the forecast. The instabilities are generated by errors in the analyzed fields. Puff predictions from the dispersion model, using ensemble forecast input, are compared, and a large spread in the predicted puff evolutions is found. This shows that the quality of the meteorological input data is important for the success of the dispersion model. In order to evaluate the dispersion model, the calculations are compared with measurements from the European Tracer Experiment. The model manages to predict the measured puff evolution concerning shape and time of arrival to a fairly high extent, up to 60 h after the start of the release. The modeled puff is still too narrow in the advection direction.

  11. Data, Meet Compute: NASA's Cumulus Ingest Architecture

    Science.gov (United States)

    Quinn, Patrick

    2018-01-01

    NASA's Earth Observing System Data and Information System (EOSDIS) houses nearly 30PBs of critical Earth Science data and with upcoming missions is expected to balloon to between 200PBs-300PBs over the next seven years. In addition to the massive increase in data collected, researchers and application developers want more and faster access - enabling complex visualizations, long time-series analysis, and cross dataset research without needing to copy and manage massive amounts of data locally. NASA has looked to the cloud to address these needs, building its Cumulus system to manage the ingest of diverse data in a wide variety of formats into the cloud. In this talk, we look at what Cumulus is from a high level and then take a deep dive into how it manages complexity and versioning associated with multiple AWS Lambda and ECS microservices communicating through AWS Step Functions across several disparate installations

  12. Transferability of hydrological models and ensemble averaging methods between contrasting climatic periods

    Science.gov (United States)

    Broderick, Ciaran; Matthews, Tom; Wilby, Robert L.; Bastola, Satish; Murphy, Conor

    2016-10-01

    Understanding hydrological model predictive capabilities under contrasting climate conditions enables more robust decision making. Using Differential Split Sample Testing (DSST), we analyze the performance of six hydrological models for 37 Irish catchments under climate conditions unlike those used for model training. Additionally, we consider four ensemble averaging techniques when examining interperiod transferability. DSST is conducted using 2/3 year noncontinuous blocks of (i) the wettest/driest years on record based on precipitation totals and (ii) years with a more/less pronounced seasonal precipitation regime. Model transferability between contrasting regimes was found to vary depending on the testing scenario, catchment, and evaluation criteria considered. As expected, the ensemble average outperformed most individual ensemble members. However, averaging techniques differed considerably in the number of times they surpassed the best individual model member. Bayesian Model Averaging (BMA) and the Granger-Ramanathan Averaging (GRA) method were found to outperform the simple arithmetic mean (SAM) and Akaike Information Criteria Averaging (AICA). Here GRA performed better than the best individual model in 51%-86% of cases (according to the Nash-Sutcliffe criterion). When assessing model predictive skill under climate change conditions we recommend (i) setting up DSST to select the best available analogues of expected annual mean and seasonal climate conditions; (ii) applying multiple performance criteria; (iii) testing transferability using a diverse set of catchments; and (iv) using a multimodel ensemble in conjunction with an appropriate averaging technique. Given the computational efficiency and performance of GRA relative to BMA, the former is recommended as the preferred ensemble averaging technique for climate assessment.

  13. Predicting lymphatic filariasis transmission and elimination dynamics using a multi-model ensemble framework

    Directory of Open Access Journals (Sweden)

    Morgan E. Smith

    2017-03-01

    Full Text Available Mathematical models of parasite transmission provide powerful tools for assessing the impacts of interventions. Owing to complexity and uncertainty, no single model may capture all features of transmission and elimination dynamics. Multi-model ensemble modelling offers a framework to help overcome biases of single models. We report on the development of a first multi-model ensemble of three lymphatic filariasis (LF models (EPIFIL, LYMFASIM, and TRANSFIL, and evaluate its predictive performance in comparison with that of the constituents using calibration and validation data from three case study sites, one each from the three major LF endemic regions: Africa, Southeast Asia and Papua New Guinea (PNG. We assessed the performance of the respective models for predicting the outcomes of annual MDA strategies for various baseline scenarios thought to exemplify the current endemic conditions in the three regions. The results show that the constructed multi-model ensemble outperformed the single models when evaluated across all sites. Single models that best fitted calibration data tended to do less well in simulating the out-of-sample, or validation, intervention data. Scenario modelling results demonstrate that the multi-model ensemble is able to compensate for variance between single models in order to produce more plausible predictions of intervention impacts. Our results highlight the value of an ensemble approach to modelling parasite control dynamics. However, its optimal use will require further methodological improvements as well as consideration of the organizational mechanisms required to ensure that modelling results and data are shared effectively between all stakeholders.

  14. Estimation of the uncertainty of a climate model using an ensemble simulation

    Science.gov (United States)

    Barth, A.; Mathiot, P.; Goosse, H.

    2012-04-01

    The atmospheric forcings play an important role in the study of the ocean and sea-ice dynamics of the Southern Ocean. Error in the atmospheric forcings will inevitably result in uncertain model results. The sensitivity of the model results to errors in the atmospheric forcings are studied with ensemble simulations using multivariate perturbations of the atmospheric forcing fields. The numerical ocean model used is the NEMO-LIM in a global configuration with an horizontal resolution of 2°. NCEP reanalyses are used to provide air temperature and wind data to force the ocean model over the last 50 years. A climatological mean is used to prescribe relative humidity, cloud cover and precipitation. In a first step, the model results is compared with OSTIA SST and OSI SAF sea ice concentration of the southern hemisphere. The seasonal behavior of the RMS difference and bias in SST and ice concentration is highlighted as well as the regions with relatively high RMS errors and biases such as the Antarctic Circumpolar Current and near the ice-edge. Ensemble simulations are performed to statistically characterize the model error due to uncertainties in the atmospheric forcings. Such information is a crucial element for future data assimilation experiments. Ensemble simulations are performed with perturbed air temperature and wind forcings. A Fourier decomposition of the NCEP wind vectors and air temperature for 2007 is used to generate ensemble perturbations. The perturbations are scaled such that the resulting ensemble spread matches approximately the RMS differences between the satellite SST and sea ice concentration. The ensemble spread and covariance are analyzed for the minimum and maximum sea ice extent. It is shown that errors in the atmospheric forcings can extend to several hundred meters in depth near the Antarctic Circumpolar Current.

  15. Assessment of Surface Air Temperature over China Using Multi-criterion Model Ensemble Framework

    Science.gov (United States)

    Li, J.; Zhu, Q.; Su, L.; He, X.; Zhang, X.

    2017-12-01

    The General Circulation Models (GCMs) are designed to simulate the present climate and project future trends. It has been noticed that the performances of GCMs are not always in agreement with each other over different regions. Model ensemble techniques have been developed to post-process the GCMs' outputs and improve their prediction reliabilities. To evaluate the performances of GCMs, root-mean-square error, correlation coefficient, and uncertainty are commonly used statistical measures. However, the simultaneous achievements of these satisfactory statistics cannot be guaranteed when using many model ensemble techniques. Meanwhile, uncertainties and future scenarios are critical for Water-Energy management and operation. In this study, a new multi-model ensemble framework was proposed. It uses a state-of-art evolutionary multi-objective optimization algorithm, termed Multi-Objective Complex Evolution Global Optimization with Principle Component Analysis and Crowding Distance (MOSPD), to derive optimal GCM ensembles and demonstrate the trade-offs among various solutions. Such trade-off information was further analyzed with a robust Pareto front with respect to different statistical measures. A case study was conducted to optimize the surface air temperature (SAT) ensemble solutions over seven geographical regions of China for the historical period (1900-2005) and future projection (2006-2100). The results showed that the ensemble solutions derived with MOSPD algorithm are superior over the simple model average and any single model output during the historical simulation period. For the future prediction, the proposed ensemble framework identified that the largest SAT change would occur in the South Central China under RCP 2.6 scenario, North Eastern China under RCP 4.5 scenario, and North Western China under RCP 8.5 scenario, while the smallest SAT change would occur in the Inner Mongolia under RCP 2.6 scenario, South Central China under RCP 4.5 scenario, and

  16. Effects of TGF-beta and GDF-9 on cumulus expension and progesterone production by oocytectomized oocyte-cumulus cell complexes

    Czech Academy of Sciences Publication Activity Database

    Vanderhyden, B. C.; Nagyová, Eva; Dhawan, D.

    2001-01-01

    Roč. 64, č. 1 (2001), s. 56 ISSN 0006-3363. [Society for the Study of Reproduction - Annual Meeting /34./. 28.07.2001-01.08.2001, Ottawa] Institutional research plan: CEZ:AV0Z5045916 Keywords : cumulus cells * oocytes Subject RIV: EB - Genetics ; Molecular Biology

  17. Modelling climate impact on floods under future emission scenarios using an ensemble of climate model projections

    Science.gov (United States)

    Wetterhall, F.; Cloke, H. L.; He, Y.; Freer, J.; Pappenberger, F.

    2012-04-01

    Evidence provided by modelled assessments of climate change impact on flooding is fundamental to water resource and flood risk decision making. Impact models usually rely on climate projections from Global and Regional Climate Models, and there is no doubt that these provide a useful assessment of future climate change. However, cascading ensembles of climate projections into impact models is not straightforward because of problems of coarse resolution in Global and Regional Climate Models (GCM/RCM) and the deficiencies in modelling high-intensity precipitation events. Thus decisions must be made on how to appropriately pre-process the meteorological variables from GCM/RCMs, such as selection of downscaling methods and application of Model Output Statistics (MOS). In this paper a grand ensemble of projections from several GCM/RCM are used to drive a hydrological model and analyse the resulting future flood projections for the Upper Severn, UK. The impact and implications of applying MOS techniques to precipitation as well as hydrological model parameter uncertainty is taken into account. The resultant grand ensemble of future river discharge projections from the RCM/GCM-hydrological model chain is evaluated against a response surface technique combined with a perturbed physics experiment creating a probabilisic ensemble climate model outputs. The ensemble distribution of results show that future risk of flooding in the Upper Severn increases compared to present conditions, however, the study highlights that the uncertainties are large and that strong assumptions were made in using Model Output Statistics to produce the estimates of future discharge. The importance of analysing on a seasonal basis rather than just annual is highlighted. The inability of the RCMs (and GCMs) to produce realistic precipitation patterns, even in present conditions, is a major caveat of local climate impact studies on flooding, and this should be a focus for future development.

  18. Impacts of Wind Farms on Cumulus Cloud Development in the Central Great Plains

    Science.gov (United States)

    Mahoney, L. C.; Wagner, T. J.; L'Ecuyer, T. S.; Kulie, M.

    2014-12-01

    Cumulus clouds have a net cooling effect on the surface radiative balance by reflecting more downwelling solar radiation than absorbing upwelling terrestrial radiation. As boundary layer cumuli form from buoyant, moist plumes ascending from the surface, their growth may be hindered by the turbulent deformation of the plume by wind farms. A natural laboratory to study the impact of wind farms on cumulus formation are the states of Iowa and Nebraska. Despite their prime location for wind resources and similar synoptic forcings, regulatory issues cause these two states to vary vastly in their wind power offerings. In 2013, Iowa ranked 3rd in the nation for total megawatts installed and generates over a quarter of its electricity from wind energy, more than any other state. In contrast, Nebraska has an order of magnitude fewer turbines installed, and less than five percent of the state's electrical load is wind-generated. This variance in wind power in close proximity makes Iowa and Nebraska a prime area for initial research. This study uses Geostationary Operational Environmental Satellite (GOES) visible satellite imagery from the summer of 2009 to 2013 to investigate cumulus development in these adjacent states, as the majority of large-scale wind farms in Iowa were completed by 2009. Image reflectances in Nebraska and Iowa are compared to determine the magnitude of cumulus growth. Preliminary analysis indicates a reduction in cumulus development near the existing wind farms; a synoptic investigation of these cases will be completed to determine causality.

  19. Real­-Time Ensemble Forecasting of Coronal Mass Ejections Using the Wsa-Enlil+Cone Model

    Science.gov (United States)

    Mays, M. L.; Taktakishvili, A.; Pulkkinen, A. A.; Odstrcil, D.; MacNeice, P. J.; Rastaetter, L.; LaSota, J. A.

    2014-12-01

    Ensemble forecasting of coronal mass ejections (CMEs) provides significant information in that it provides an estimation of the spread or uncertainty in CME arrival time predictions. Real-time ensemble modeling of CME propagation is performed by forecasters at the Space Weather Research Center (SWRC) using the WSA-ENLIL+cone model available at the Community Coordinated Modeling Center (CCMC). To estimate the effect of uncertainties in determining CME input parameters on arrival time predictions, a distribution of n (routinely n=48) CME input parameter sets are generated using the CCMC Stereo CME Analysis Tool (StereoCAT) which employs geometrical triangulation techniques. These input parameters are used to perform n different simulations yielding an ensemble of solar wind parameters at various locations of interest, including a probability distribution of CME arrival times (for hits), and geomagnetic storm strength (for Earth-directed hits). We present the results of ensemble simulations for a total of 38 CME events in 2013-2014. For 28 of the ensemble runs containing hits, the observed CME arrival was within the range of ensemble arrival time predictions for 14 runs (half). The average arrival time prediction was computed for each of the 28 ensembles predicting hits and using the actual arrival time, an average absolute error of 10.0 hours (RMSE=11.4 hours) was found for all 28 ensembles, which is comparable to current forecasting errors. Some considerations for the accuracy of ensemble CME arrival time predictions include the importance of the initial distribution of CME input parameters, particularly the mean and spread. When the observed arrivals are not within the predicted range, this still allows the ruling out of prediction errors caused by tested CME input parameters. Prediction errors can also arise from ambient model parameters such as the accuracy of the solar wind background, and other limitations. Additionally the ensemble modeling sysem was used to

  20. Assessing the Resolution Adaptability of the Zhang-McFarlane Cumulus Parameterization With Spatial and Temporal Averaging: RESOLUTION ADAPTABILITY OF ZM SCHEME

    Energy Technology Data Exchange (ETDEWEB)

    Yun, Yuxing [Atmospheric Sciences and Global Change Division, Pacific Northwest National Laboratory, Richland WA USA; State Key Laboratory of Severe Weather, Chinese Academy of Meteorological Sciences, Beijing China; Fan, Jiwen [Atmospheric Sciences and Global Change Division, Pacific Northwest National Laboratory, Richland WA USA; Xiao, Heng [Atmospheric Sciences and Global Change Division, Pacific Northwest National Laboratory, Richland WA USA; Zhang, Guang J. [Scripps Institution of Oceanography, University of California, San Diego CA USA; Ghan, Steven J. [Atmospheric Sciences and Global Change Division, Pacific Northwest National Laboratory, Richland WA USA; Xu, Kuan-Man [NASA Langley Research Center, Hampton VA USA; Ma, Po-Lun [Atmospheric Sciences and Global Change Division, Pacific Northwest National Laboratory, Richland WA USA; Gustafson, William I. [Atmospheric Sciences and Global Change Division, Pacific Northwest National Laboratory, Richland WA USA

    2017-11-01

    Realistic modeling of cumulus convection at fine model resolutions (a few to a few tens of km) is problematic since it requires the cumulus scheme to adapt to higher resolution than they were originally designed for (~100 km). To solve this problem, we implement the spatial averaging method proposed in Xiao et al. (2015) and also propose a temporal averaging method for the large-scale convective available potential energy (CAPE) tendency in the Zhang-McFarlane (ZM) cumulus parameterization. The resolution adaptability of the original ZM scheme, the scheme with spatial averaging, and the scheme with both spatial and temporal averaging at 4-32 km resolution is assessed using the Weather Research and Forecasting (WRF) model, by comparing with Cloud Resolving Model (CRM) results. We find that the original ZM scheme has very poor resolution adaptability, with sub-grid convective transport and precipitation increasing significantly as the resolution increases. The spatial averaging method improves the resolution adaptability of the ZM scheme and better conserves the total transport of moist static energy and total precipitation. With the temporal averaging method, the resolution adaptability of the scheme is further improved, with sub-grid convective precipitation becoming smaller than resolved precipitation for resolution higher than 8 km, which is consistent with the results from the CRM simulation. Both the spatial distribution and time series of precipitation are improved with the spatial and temporal averaging methods. The results may be helpful for developing resolution adaptability for other cumulus parameterizations that are based on quasi-equilibrium assumption.

  1. Spermatozoa of the shrew, Suncus murinus, undergo the acrosome reaction and then selectively kill cells in penetrating the cumulus oophorus.

    Science.gov (United States)

    Kaneko, T; Iida, H; Bedford, J M; Mōri, T

    2001-08-01

    In the musk shrew, Suncus murinus (and other shrews), the cumulus oophorus is ovulated as a discrete, compact, matrix-free ball of cells linked by specialized junctions. In examining how they penetrate the cumulus, Suncus spermatozoa were observed to first bind consistently by the ventral face over the acrosomal region to the exposed smooth surface of a peripheral cumulus cell. This was apparently followed by point fusions between the plasma and outer acrosomal membranes. Thereafter, spermatozoa without acrosomes were observed within cumulus cells that displayed signs of necrosis, as did some radially neighboring cumulus cells linked by zona adherens and gap junctions. Eventually, penetration of spermatozoa as far as the perizonal space around the zona pellucida left linear tracks of locally necrotic cells flanked by normal cumulus cells. Based on these and previous observations, we conclude that the acrosome reaction in Suncus is always induced by cumulus cells, and that reacted spermatozoa penetrate the cumulus by selective invasion and killing of cumulus cells along a linear track. Loss of the acrosome also exposes an apical body/perforatorium that is covered with barbs that appear to assist reacted fertilizing spermatozoa in binding to the zona pellucida. Because fertilized eggs displayed no other spermatozoa within or bound to the zona, an efficient block to polyspermy must prevent such binding of additional spermatozoa.

  2. Influences of Appalachian orography on heavy rainfall and rainfall variability associated with the passage of hurricane Isabel by ensemble simulations

    Science.gov (United States)

    Oldaker, Guy; Liu, Liping; Lin, Yuh-Lang

    2017-12-01

    This study focuses on the heavy rainfall event associated with hurricane Isabel's (2003) passage over the Appalachian mountains of the eastern United States. Specifically, an ensemble consisting of two groups of simulations using the Weather Research and Forecasting model (WRF), with and without topography, is performed to investigate the orographic influences on heavy rainfall and rainfall variability. In general, the simulated ensemble mean with full terrain is able to reproduce the key observed 24-h rainfall amount and distribution, while the flat-terrain mean lacks in this respect. In fact, 30-h rainfall amounts are reduced by 75% with the removal of topography. Rainfall variability is also significantly increased with the presence of orography. Further analysis shows that the complex interaction between the hurricane and terrain along with contributions from varied microphysics, cumulus parametrization, and planetary boundary layer schemes have a pronounced effect on rainfall and rainfall variability. This study follows closely with a previous study, but for a different TC case of Isabel (2003). It is an important sensitivity test for a different TC in a very different environment. This study reveals that the rainfall variability behaves similarly, even with different settings of the environment.

  3. Proteasomal activity has multiple functions in oocyte meiosis, in cumulus expansion, in synthesis and processing of cumulus extracellular matrix and steroidogenesis

    Czech Academy of Sciences Publication Activity Database

    Nagyová, Eva

    2014-01-01

    Roč. 3, č. 2 (2014), s. 163-163 ISSN 2161-1017. [International Conference on Endocrinology /2./. 20.10.2014-22.10.2014, Chicago] Institutional support: RVO:67985904 Keywords : oocyte-cumulus complexes Subject RIV: EB - Genetics ; Molecular Biology

  4. An Economical Analytical Equation for the Integrated Vertical Overlap of Cumulus and Stratus

    Science.gov (United States)

    Park, Sungsu

    2018-03-01

    By extending the previously proposed heuristic parameterization, the author derived an analytical equation computing the overlap areas between the precipitation (or radiation) areas and the cloud areas in a cloud system consisting of cumulus and stratus. The new analytical equation is accurate and much more efficient than the previous heuristic equation, which suffers from the truncation error in association with the digitalization of the overlap areas. Global test simulations with the new analytical formula in an offline mode showed that the maximum cumulus overlap simulates more surface precipitation flux than the random cumulus overlap. On the other hand, the maximum stratus overlap simulates less surface precipitation flux than random stratus overlap, which is due to the increase in the evaporation rate of convective precipitation from the random to maximum stratus overlap. The independent precipitation approximation (IPA) marginally decreases the surface precipitation flux, implying that IPA works well with other parameterizations. In contrast to the net production rate of precipitation and surface precipitation flux that increase when the cumulus and stratus are maximally and randomly overlapped, respectively, the global mean net radiative cooling and longwave cloud radiative forcing (LWCF) increase when the cumulus and stratus are randomly overlapped. On the global average, the vertical cloud overlap exerts larger impacts on the precipitation flux than on the radiation flux. The radiation scheme taking the subgrid variability of water vapor between the cloud and clear portions into account substantially increases the global mean LWCF in tropical deep convection and midlatitude storm track regions.

  5. Validation of precipitation over Japan during 1985-2004 simulated by three regional climate models and two multi-model ensemble means

    Energy Technology Data Exchange (ETDEWEB)

    Ishizaki, Yasuhiro [Meteorological Research Institute, Tsukuba (Japan); National Institute for Environmental Studies, Tsukuba (Japan); Nakaegawa, Toshiyuki; Takayabu, Izuru [Meteorological Research Institute, Tsukuba (Japan)

    2012-07-15

    We dynamically downscaled Japanese reanalysis data (JRA-25) for 60 regions of Japan using three regional climate models (RCMs): the Non-Hydrostatic Regional Climate Model (NHRCM), modified RAMS version 4.3 (NRAMS), and modified Weather Research and Forecasting model (TWRF). We validated their simulations of the precipitation climatology and interannual variations of summer and winter precipitation. We also validated precipitation for two multi-model ensemble means: the arithmetic ensemble mean (AEM) and an ensemble mean weighted according to model reliability. In the 60 regions NRAMS simulated both the winter and summer climatological precipitation better than JRA-25, and NHRCM simulated the wintertime precipitation better than JRA-25. TWRF, however, overestimated precipitation in the 60 regions in both the winter and summer, and NHRCM overestimated precipitation in the summer. The three RCMs simulated interannual variations, particularly summer precipitation, better than JRA-25. AEM simulated both climatological precipitation and interannual variations during the two seasons more realistically than JRA-25 and the three RCMs overall, but the best RCM was often superior to the AEM result. In contrast, the weighted ensemble mean skills were usually superior to those of the best RCM. Thus, both RCMs and multi-model ensemble means, especially multi-model ensemble means weighted according to model reliability, are powerful tools for simulating seasonal and interannual variability of precipitation in Japan under the current climate. (orig.)

  6. Towards a GME ensemble forecasting system: Ensemble initialization using the breeding technique

    Directory of Open Access Journals (Sweden)

    Jan D. Keller

    2008-12-01

    Full Text Available The quantitative forecast of precipitation requires a probabilistic background particularly with regard to forecast lead times of more than 3 days. As only ensemble simulations can provide useful information of the underlying probability density function, we built a new ensemble forecasting system (GME-EFS based on the GME model of the German Meteorological Service (DWD. For the generation of appropriate initial ensemble perturbations we chose the breeding technique developed by Toth and Kalnay (1993, 1997, which develops perturbations by estimating the regions of largest model error induced uncertainty. This method is applied and tested in the framework of quasi-operational forecasts for a three month period in 2007. The performance of the resulting ensemble forecasts are compared to the operational ensemble prediction systems ECMWF EPS and NCEP GFS by means of ensemble spread of free atmosphere parameters (geopotential and temperature and ensemble skill of precipitation forecasting. This comparison indicates that the GME ensemble forecasting system (GME-EFS provides reasonable forecasts with spread skill score comparable to that of the NCEP GFS. An analysis with the continuous ranked probability score exhibits a lack of resolution for the GME forecasts compared to the operational ensembles. However, with significant enhancements during the 3 month test period, the first results of our work with the GME-EFS indicate possibilities for further development as well as the potential for later operational usage.

  7. Assessment of managed aquifer recharge potential using ensembles of local models.

    Science.gov (United States)

    Smith, Anthony J; Pollock, Daniel W

    2012-01-01

    A simple quantitative approach for assessing the artificial recharge potential of large regions using spatial ensembles of local models is proposed. The method extends existing qualitative approaches and enables rapid assessments within a programmable environment. Spatial discretization of a water resource region into continuous local domains allows simple local models to be applied independently in each domain using lumped parameters. The ensemble results can be analyzed directly or combined with other quantitative and thematic information and visualized as regional suitability maps. A case study considers the hydraulic potential for surface infiltration across a large water resource region using a published analytic model for basin recharge. The model solution was implemented within a geographic information system and evaluated independently in >21,000 local domains using lumped parameters derived from existing regional datasets. Computer execution times to run the whole ensemble and process the results were in the order of a few minutes. Relevant aspects of the case study results and general conclusions concerning the utility and limitations of the method are discussed. © 2011, CSIRO. Ground Water © 2011, National Ground Water Association.

  8. Organization of the expanded cumulus-extracellular matrix in preovulatory follicles: arole for inter-alpha-trypsin inhibitor.

    Czech Academy of Sciences Publication Activity Database

    Nagyová, Eva

    2015-01-01

    Roč. 49, č. 1 (2015), s. 37-45 ISSN 1210-0668 R&D Projects: GA ČR GA305/05/0960 Institutional support: RVO:67985904 Keywords : cumulus expansion * cumulus-extracellular matrix * hyaluronan Subject RIV: ED - Physiology

  9. JuPOETs: a constrained multiobjective optimization approach to estimate biochemical model ensembles in the Julia programming language.

    Science.gov (United States)

    Bassen, David M; Vilkhovoy, Michael; Minot, Mason; Butcher, Jonathan T; Varner, Jeffrey D

    2017-01-25

    Ensemble modeling is a promising approach for obtaining robust predictions and coarse grained population behavior in deterministic mathematical models. Ensemble approaches address model uncertainty by using parameter or model families instead of single best-fit parameters or fixed model structures. Parameter ensembles can be selected based upon simulation error, along with other criteria such as diversity or steady-state performance. Simulations using parameter ensembles can estimate confidence intervals on model variables, and robustly constrain model predictions, despite having many poorly constrained parameters. In this software note, we present a multiobjective based technique to estimate parameter or models ensembles, the Pareto Optimal Ensemble Technique in the Julia programming language (JuPOETs). JuPOETs integrates simulated annealing with Pareto optimality to estimate ensembles on or near the optimal tradeoff surface between competing training objectives. We demonstrate JuPOETs on a suite of multiobjective problems, including test functions with parameter bounds and system constraints as well as for the identification of a proof-of-concept biochemical model with four conflicting training objectives. JuPOETs identified optimal or near optimal solutions approximately six-fold faster than a corresponding implementation in Octave for the suite of test functions. For the proof-of-concept biochemical model, JuPOETs produced an ensemble of parameters that gave both the mean of the training data for conflicting data sets, while simultaneously estimating parameter sets that performed well on each of the individual objective functions. JuPOETs is a promising approach for the estimation of parameter and model ensembles using multiobjective optimization. JuPOETs can be adapted to solve many problem types, including mixed binary and continuous variable types, bilevel optimization problems and constrained problems without altering the base algorithm. JuPOETs is open

  10. One-Step Dynamic Classifier Ensemble Model for Customer Value Segmentation with Missing Values

    Directory of Open Access Journals (Sweden)

    Jin Xiao

    2014-01-01

    Full Text Available Scientific customer value segmentation (CVS is the base of efficient customer relationship management, and customer credit scoring, fraud detection, and churn prediction all belong to CVS. In real CVS, the customer data usually include lots of missing values, which may affect the performance of CVS model greatly. This study proposes a one-step dynamic classifier ensemble model for missing values (ODCEM model. On the one hand, ODCEM integrates the preprocess of missing values and the classification modeling into one step; on the other hand, it utilizes multiple classifiers ensemble technology in constructing the classification models. The empirical results in credit scoring dataset “German” from UCI and the real customer churn prediction dataset “China churn” show that the ODCEM outperforms four commonly used “two-step” models and the ensemble based model LMF and can provide better decision support for market managers.

  11. Expression of apoptotic genes in immature and in vitro matured equine oocytes and cumulus cells.

    Science.gov (United States)

    Leon, P M M; Campos, V F; Kaefer, C; Begnini, K R; McBride, A J A; Dellagostin, O A; Seixas, F K; Deschamps, J C; Collares, T

    2013-08-01

    The gene expression of Bax, Bcl-2, survivin and p53, following in vitro maturation of equine oocytes, was compared in morphologically distinct oocytes and cumulus cells. Cumulus-oocyte complexes (COC) were harvested and divided into two groups: G1 - morphologically healthy cells; and G2 - less viable cells or cells with some degree of atresia. Total RNA was isolated from both immature and in vitro matured COC and real-time reverse transcription polymerase chain reaction (qRT-PCR) was used to quantify gene expression. Our results showed there was significantly higher expression of survivin (P < 0.05) and lower expression of p53 (P < 0.01) in oocytes compared with cumulus cells in G1. No significant difference in gene expression was observed following in vitro maturation or in COC derived from G1 and G2. However, expression of the Bax gene was significantly higher in cumulus cells from G1 (P < 0.02).

  12. Modelling of drug release from ensembles of aspirin microcapsules ...

    African Journals Online (AJOL)

    Purpose: In order to determine the drug release profile of an ensemble of aspirin crystals or microcapsules from its particle distribution a mathematical model that considered the individual release characteristics of the component single particles was developed. The model assumed that under sink conditions the release ...

  13. Ensemble Sampling

    OpenAIRE

    Lu, Xiuyuan; Van Roy, Benjamin

    2017-01-01

    Thompson sampling has emerged as an effective heuristic for a broad range of online decision problems. In its basic form, the algorithm requires computing and sampling from a posterior distribution over models, which is tractable only for simple special cases. This paper develops ensemble sampling, which aims to approximate Thompson sampling while maintaining tractability even in the face of complex models such as neural networks. Ensemble sampling dramatically expands on the range of applica...

  14. A treatment for the stratocumulus-to-cumulus transition in GCMs

    Energy Technology Data Exchange (ETDEWEB)

    Xiao, Heng; Mechoso, C.R. [University of California, Department of Atmospheric and Oceanic Sciences, Los Angeles, CA (United States); Wu, Chien-Ming [National Taiwan University, Department of Atmospheric Sciences, Taipei (China); Ma, Hsi-Yen [Lawrence Livermore National Laboratory, Program for Climate Model Diagnosis and Intercomparison, Livermore, CA (United States)

    2012-12-15

    Numerical models of climate have great difficulties with the simulation of marine low clouds in the subtropical Pacific and Atlantic Oceans. It has been especially difficult to reproduce the observed geographical distributions of the different cloud regimes in those regions. The present study discusses mechanisms proposed in previous works for changing one regime into another. One criterion is based on the theory of stratocumulus destruction through cloud top entrainment instability due to buoyancy reversal - situations in which the mixture of two air parcels becomes denser than either of the original parcels due to evaporation of cloud water. Another criterion is based on the existence of decoupling in the boundary layer. When decoupled, the stratocumulus regime changes to another in which these clouds can still exist together with cumulus. In a LES study, the authors have suggested that a combination of those two criteria can be used to diagnose whether, at a location, the cloud regime corresponds to a well-mixed stratocumulus regime, a shallow cumulus regime, or to a transitional regime where the boundary layer is decoupled. The concept is tested in the framework of an atmospheric general circulation model (GCM). It is found that several outstanding features of disagreement between simulation and observation can be interpreted as misrepresentations of the cloud regimes by the GCM. A novel criterion for switching among regimes is proposed to alleviate the effects of these misrepresentations. (orig.)

  15. Cloud Properties Simulated by a Single-Column Model. Part II: Evaluation of Cumulus Detrainment and Ice-phase Microphysics Using a Cloud Resolving Model

    Science.gov (United States)

    Luo, Yali; Krueger, Steven K.; Xu, Kuan-Man

    2005-01-01

    This paper is the second in a series in which kilometer-scale-resolving observations from the Atmospheric Radiation Measurement program and a cloud-resolving model (CRM) are used to evaluate the single-column model (SCM) version of the National Centers for Environmental Prediction Global Forecast System model. Part I demonstrated that kilometer-scale cirrus properties simulated by the SCM significantly differ from the cloud radar observations while the CRM simulation reproduced most of the cirrus properties as revealed by the observations. The present study describes an evaluation, through a comparison with the CRM, of the SCM's representation of detrainment from deep cumulus and ice-phase microphysics in an effort to better understand the findings of Part I. It is found that detrainment occurs too infrequently at a single level at a time in the SCM, although the detrainment rate averaged over the entire simulation period is somewhat comparable to that of the CRM simulation. Relatively too much detrained ice is sublimated when first detrained. Snow falls over too deep of a layer due to the assumption that snow source and sink terms exactly balance within one time step in the SCM. These characteristics in the SCM parameterizations may explain many of the differences in the cirrus properties between the SCM and the observations (or between the SCM and the CRM). A possible improvement for the SCM consists of the inclusion of multiple cumulus cloud types as in the original Arakawa-Schubert scheme, prognostically determining the stratiform cloud fraction and snow mixing ratio. This would allow better representation of the detrainment from deep convection, better coupling of the volume of detrained air with cloud fraction, and better representation of snow field.

  16. Cluster-based analysis of multi-model climate ensembles

    Science.gov (United States)

    Hyde, Richard; Hossaini, Ryan; Leeson, Amber A.

    2018-06-01

    Clustering - the automated grouping of similar data - can provide powerful and unique insight into large and complex data sets, in a fast and computationally efficient manner. While clustering has been used in a variety of fields (from medical image processing to economics), its application within atmospheric science has been fairly limited to date, and the potential benefits of the application of advanced clustering techniques to climate data (both model output and observations) has yet to be fully realised. In this paper, we explore the specific application of clustering to a multi-model climate ensemble. We hypothesise that clustering techniques can provide (a) a flexible, data-driven method of testing model-observation agreement and (b) a mechanism with which to identify model development priorities. We focus our analysis on chemistry-climate model (CCM) output of tropospheric ozone - an important greenhouse gas - from the recent Atmospheric Chemistry and Climate Model Intercomparison Project (ACCMIP). Tropospheric column ozone from the ACCMIP ensemble was clustered using the Data Density based Clustering (DDC) algorithm. We find that a multi-model mean (MMM) calculated using members of the most-populous cluster identified at each location offers a reduction of up to ˜ 20 % in the global absolute mean bias between the MMM and an observed satellite-based tropospheric ozone climatology, with respect to a simple, all-model MMM. On a spatial basis, the bias is reduced at ˜ 62 % of all locations, with the largest bias reductions occurring in the Northern Hemisphere - where ozone concentrations are relatively large. However, the bias is unchanged at 9 % of all locations and increases at 29 %, particularly in the Southern Hemisphere. The latter demonstrates that although cluster-based subsampling acts to remove outlier model data, such data may in fact be closer to observed values in some locations. We further demonstrate that clustering can provide a viable and

  17. A deep learning-based multi-model ensemble method for cancer prediction.

    Science.gov (United States)

    Xiao, Yawen; Wu, Jun; Lin, Zongli; Zhao, Xiaodong

    2018-01-01

    Cancer is a complex worldwide health problem associated with high mortality. With the rapid development of the high-throughput sequencing technology and the application of various machine learning methods that have emerged in recent years, progress in cancer prediction has been increasingly made based on gene expression, providing insight into effective and accurate treatment decision making. Thus, developing machine learning methods, which can successfully distinguish cancer patients from healthy persons, is of great current interest. However, among the classification methods applied to cancer prediction so far, no one method outperforms all the others. In this paper, we demonstrate a new strategy, which applies deep learning to an ensemble approach that incorporates multiple different machine learning models. We supply informative gene data selected by differential gene expression analysis to five different classification models. Then, a deep learning method is employed to ensemble the outputs of the five classifiers. The proposed deep learning-based multi-model ensemble method was tested on three public RNA-seq data sets of three kinds of cancers, Lung Adenocarcinoma, Stomach Adenocarcinoma and Breast Invasive Carcinoma. The test results indicate that it increases the prediction accuracy of cancer for all the tested RNA-seq data sets as compared to using a single classifier or the majority voting algorithm. By taking full advantage of different classifiers, the proposed deep learning-based multi-model ensemble method is shown to be accurate and effective for cancer prediction. Copyright © 2017 Elsevier B.V. All rights reserved.

  18. The role of model dynamics in ensemble Kalman filter performance for chaotic systems

    Science.gov (United States)

    Ng, G.-H.C.; McLaughlin, D.; Entekhabi, D.; Ahanin, A.

    2011-01-01

    The ensemble Kalman filter (EnKF) is susceptible to losing track of observations, or 'diverging', when applied to large chaotic systems such as atmospheric and ocean models. Past studies have demonstrated the adverse impact of sampling error during the filter's update step. We examine how system dynamics affect EnKF performance, and whether the absence of certain dynamic features in the ensemble may lead to divergence. The EnKF is applied to a simple chaotic model, and ensembles are checked against singular vectors of the tangent linear model, corresponding to short-term growth and Lyapunov vectors, corresponding to long-term growth. Results show that the ensemble strongly aligns itself with the subspace spanned by unstable Lyapunov vectors. Furthermore, the filter avoids divergence only if the full linearized long-term unstable subspace is spanned. However, short-term dynamics also become important as non-linearity in the system increases. Non-linear movement prevents errors in the long-term stable subspace from decaying indefinitely. If these errors then undergo linear intermittent growth, a small ensemble may fail to properly represent all important modes, causing filter divergence. A combination of long and short-term growth dynamics are thus critical to EnKF performance. These findings can help in developing practical robust filters based on model dynamics. ?? 2011 The Authors Tellus A ?? 2011 John Wiley & Sons A/S.

  19. Cumulus cell mitochondrial activity in relation to body mass index in women undergoing assisted reproductive therapy

    Directory of Open Access Journals (Sweden)

    Victoria K. Gorshinova

    2017-06-01

    Full Text Available Most studies have considered the negative influence of obesity on fertility in both genders. In the present study, we assessed mitochondrial activity expressed as the mitochondrial potential index (MPI in cumulus cells from obese women and women with a normal body mass index (BMI during assisted reproductive therapy. The results revealed a significant reduction of MPI with increased body mass. The lower MPI levels in cumulus cells from obese women may reflect mitochondrial dysfunction caused by oxidative stress, which can affect the cumulus-oocyte complex and have an impact on oocyte development.

  20. Ensemble Data Mining Methods

    Science.gov (United States)

    Oza, Nikunj C.

    2004-01-01

    Ensemble Data Mining Methods, also known as Committee Methods or Model Combiners, are machine learning methods that leverage the power of multiple models to achieve better prediction accuracy than any of the individual models could on their own. The basic goal when designing an ensemble is the same as when establishing a committee of people: each member of the committee should be as competent as possible, but the members should be complementary to one another. If the members are not complementary, Le., if they always agree, then the committee is unnecessary---any one member is sufficient. If the members are complementary, then when one or a few members make an error, the probability is high that the remaining members can correct this error. Research in ensemble methods has largely revolved around designing ensembles consisting of competent yet complementary models.

  1. Effects of Mitochondrial Uncoupling Protein 2 Inhibition by Genipin in Human Cumulus Cells

    Directory of Open Access Journals (Sweden)

    Hongshan Ge

    2015-01-01

    Full Text Available UCP2 plays a physiological role by regulating mitochondrial biogenesis, maintaining energy balance, ROS elimination, and regulating cellular autophagy in numerous tissues. But the exact roles of UCP2 in cumulus cells are still not clear. Genipin, a special UCP2 inhibitor, was added into the cultural medium to explore the roles of UCP2 in human cumulus cells. There were no significant differences in ATP and mitochondrial membrane potential levels in cumulus cells from UCP2 inhibiting groups as compared with the control. The levels of ROS and Mn-SOD were markedly elevated after UCP2 inhibited Genipin. However, the ratio of reduced GSH to GSSG significantly declined after treatment with Genipin. UCP2 inhibition by Genipin also resulted in obvious increase in the active caspase-3, which accompanied the decline of caspase-3 mRNA. The level of progesterone in culture medium declined obviously after Genipin treatment. But there was no significant difference in estradiol concentrations. This study indicated that UCP2 is expressed in human cumulus cells and plays important roles on mediate ROS production, apoptotic process, and steroidogenesis, suggesting UCP2 may be involved in regulation of follicle development and oocyte maturation and quality.

  2. Ensemble Modeling for Robustness Analysis in engineering non-native metabolic pathways.

    Science.gov (United States)

    Lee, Yun; Lafontaine Rivera, Jimmy G; Liao, James C

    2014-09-01

    Metabolic pathways in cells must be sufficiently robust to tolerate fluctuations in expression levels and changes in environmental conditions. Perturbations in expression levels may lead to system failure due to the disappearance of a stable steady state. Increasing evidence has suggested that biological networks have evolved such that they are intrinsically robust in their network structure. In this article, we presented Ensemble Modeling for Robustness Analysis (EMRA), which combines a continuation method with the Ensemble Modeling approach, for investigating the robustness issue of non-native pathways. EMRA investigates a large ensemble of reference models with different parameters, and determines the effects of parameter drifting until a bifurcation point, beyond which a stable steady state disappears and system failure occurs. A pathway is considered to have high bifurcational robustness if the probability of system failure is low in the ensemble. To demonstrate the utility of EMRA, we investigate the bifurcational robustness of two synthetic central metabolic pathways that achieve carbon conservation: non-oxidative glycolysis and reverse glyoxylate cycle. With EMRA, we determined the probability of system failure of each design and demonstrated that alternative designs of these pathways indeed display varying degrees of bifurcational robustness. Furthermore, we demonstrated that target selection for flux improvement should consider the trade-offs between robustness and performance. Copyright © 2014 The Authors. Published by Elsevier Inc. All rights reserved.

  3. Progesterone from the cumulus cells is the sperm chemoattractant secreted by the rabbit oocyte cumulus complex.

    Directory of Open Access Journals (Sweden)

    Héctor Alejandro Guidobaldi

    Full Text Available Sperm chemotaxis in mammals have been identified towards several female sources as follicular fluid (FF, oviduct fluid, and conditioned medium from the cumulus oophorus (CU and the oocyte (O. Though several substances were confirmed as sperm chemoattractant, Progesterone (P seems to be the best chemoattractant candidate, because: 1 spermatozoa express a cell surface P receptor, 2 capacitated spermatozoa are chemotactically attracted in vitro by gradients of low quantities of P; 3 the CU cells produce and secrete P after ovulation; 4 a gradient of P may be kept stable along the CU; and 5 the most probable site for sperm chemotaxis in vivo could be near and/or inside the CU. The aim of this study was to verify whether P is the sperm chemoattractant secreted by the rabbit oocyte-cumulus complex (OCC in the rabbit, as a mammalian animal model. By means of videomicroscopy and computer image analysis we observed that only the CU are a stable source of sperm attractants. The CU produce and secrete P since the hormone was localized inside these cells by immunocytochemistry and in the conditioned medium by enzyme immunoassay. In addition, rabbit spermatozoa express a cell surface P receptor detected by western blot and localized over the acrosomal region by immunocytochemistry. To confirm that P is the sperm chemoattractant secreted by the CU, the sperm chemotactic response towards the OCC conditioned medium was inhibited by three different approaches: P from the OCC conditioned medium was removed with an anti-P antibody, the attractant gradient of the OCC conditioned medium was disrupted by a P counter gradient, and the sperm P receptor was blocked with a specific antibody. We concluded that only the CU but not the oocyte secretes P, and the latter chemoattract spermatozoa by means of a cell surface receptor. Our findings may be of interest in assisted reproduction procedures in humans, animals of economic importance and endangered species.

  4. Ensemble modeling of E. coli in the Charles River, Boston, Massachusetts, USA.

    Science.gov (United States)

    Hellweger, F L

    2007-01-01

    A case study of ensemble modeling of Escherichia coli (E. coli) densities in surface waters in the context of public health risk prediction is presented. The output of two different models, mechanistic and empirical, are combined and compared to data. The mechanistic model is a high-resolution, time-variable, three-dimensional coupled hydrodynamic and water quality model. It generally reproduces the mechanisms of E. coli fate and transport in the river, including the presence and absence of a plume in the study area under similar input, but different hydrodynamic conditions caused by the operation of a downstream dam and wind. At the time series station, the model has a root mean square error (RMSE) of 370 CFU/100mL, a total error rate (with respect to the EPA-recommended single sample criteria value of 235 CFU/100mL) (TER) of 15% and negative error rate (NER) of 30%. The empirical model is based on multiple linear regression using the forcing functions of the mechanistic model as independent variables. It has better overall performance (at the time series station), due to a strong correlation of E. coli density with upstream inflow for this time period (RMSE =200 CFU/100mL, TER =13%, NER =1.6%). However, the model is mechanistically incorrect in that it predicts decreasing densities with increasing Combined Sewer Overflow (CSO) input. The two models are fundamentally different and their errors are uncorrelated (R(2) =0.02), which motivates their combination in an ensemble. Two combination approaches, a geometric mean ensemble (GME) and an "either exceeds" ensemble (EEE), are explored. The GME model outperforms the mechanistic and empirical models in terms of RMSE (190 CFU/100mL) and TER (11%), but has a higher NER (23%). The EEE has relatively high TER (16%), but low NER (0.8%) and may be the best method for a conservative prediction. The study demonstrates the potential utility of ensemble modeling for pathogen indicators, but significant further research is

  5. Ensemble data assimilation in the Red Sea: sensitivity to ensemble selection and atmospheric forcing

    KAUST Repository

    Toye, Habib

    2017-05-26

    We present our efforts to build an ensemble data assimilation and forecasting system for the Red Sea. The system consists of the high-resolution Massachusetts Institute of Technology general circulation model (MITgcm) to simulate ocean circulation and of the Data Research Testbed (DART) for ensemble data assimilation. DART has been configured to integrate all members of an ensemble adjustment Kalman filter (EAKF) in parallel, based on which we adapted the ensemble operations in DART to use an invariant ensemble, i.e., an ensemble Optimal Interpolation (EnOI) algorithm. This approach requires only single forward model integration in the forecast step and therefore saves substantial computational cost. To deal with the strong seasonal variability of the Red Sea, the EnOI ensemble is then seasonally selected from a climatology of long-term model outputs. Observations of remote sensing sea surface height (SSH) and sea surface temperature (SST) are assimilated every 3 days. Real-time atmospheric fields from the National Center for Environmental Prediction (NCEP) and the European Center for Medium-Range Weather Forecasts (ECMWF) are used as forcing in different assimilation experiments. We investigate the behaviors of the EAKF and (seasonal-) EnOI and compare their performances for assimilating and forecasting the circulation of the Red Sea. We further assess the sensitivity of the assimilation system to various filtering parameters (ensemble size, inflation) and atmospheric forcing.

  6. Clustered iterative stochastic ensemble method for multi-modal calibration of subsurface flow models

    KAUST Repository

    Elsheikh, Ahmed H.

    2013-05-01

    A novel multi-modal parameter estimation algorithm is introduced. Parameter estimation is an ill-posed inverse problem that might admit many different solutions. This is attributed to the limited amount of measured data used to constrain the inverse problem. The proposed multi-modal model calibration algorithm uses an iterative stochastic ensemble method (ISEM) for parameter estimation. ISEM employs an ensemble of directional derivatives within a Gauss-Newton iteration for nonlinear parameter estimation. ISEM is augmented with a clustering step based on k-means algorithm to form sub-ensembles. These sub-ensembles are used to explore different parts of the search space. Clusters are updated at regular intervals of the algorithm to allow merging of close clusters approaching the same local minima. Numerical testing demonstrates the potential of the proposed algorithm in dealing with multi-modal nonlinear parameter estimation for subsurface flow models. © 2013 Elsevier B.V.

  7. An iterative stochastic ensemble method for parameter estimation of subsurface flow models

    International Nuclear Information System (INIS)

    Elsheikh, Ahmed H.; Wheeler, Mary F.; Hoteit, Ibrahim

    2013-01-01

    Parameter estimation for subsurface flow models is an essential step for maximizing the value of numerical simulations for future prediction and the development of effective control strategies. We propose the iterative stochastic ensemble method (ISEM) as a general method for parameter estimation based on stochastic estimation of gradients using an ensemble of directional derivatives. ISEM eliminates the need for adjoint coding and deals with the numerical simulator as a blackbox. The proposed method employs directional derivatives within a Gauss–Newton iteration. The update equation in ISEM resembles the update step in ensemble Kalman filter, however the inverse of the output covariance matrix in ISEM is regularized using standard truncated singular value decomposition or Tikhonov regularization. We also investigate the performance of a set of shrinkage based covariance estimators within ISEM. The proposed method is successfully applied on several nonlinear parameter estimation problems for subsurface flow models. The efficiency of the proposed algorithm is demonstrated by the small size of utilized ensembles and in terms of error convergence rates

  8. An iterative stochastic ensemble method for parameter estimation of subsurface flow models

    KAUST Repository

    Elsheikh, Ahmed H.

    2013-06-01

    Parameter estimation for subsurface flow models is an essential step for maximizing the value of numerical simulations for future prediction and the development of effective control strategies. We propose the iterative stochastic ensemble method (ISEM) as a general method for parameter estimation based on stochastic estimation of gradients using an ensemble of directional derivatives. ISEM eliminates the need for adjoint coding and deals with the numerical simulator as a blackbox. The proposed method employs directional derivatives within a Gauss-Newton iteration. The update equation in ISEM resembles the update step in ensemble Kalman filter, however the inverse of the output covariance matrix in ISEM is regularized using standard truncated singular value decomposition or Tikhonov regularization. We also investigate the performance of a set of shrinkage based covariance estimators within ISEM. The proposed method is successfully applied on several nonlinear parameter estimation problems for subsurface flow models. The efficiency of the proposed algorithm is demonstrated by the small size of utilized ensembles and in terms of error convergence rates. © 2013 Elsevier Inc.

  9. Comparison of gene expression patterns between porcine cumulus ...

    African Journals Online (AJOL)

    These results suggest that the aberrant of gene expression patterns detected in the oocytes of NOs compared with COCs explains their reduced quality in terms of development and maturation. In conclusion, these differentially expressed mRNAs may be involved in cellular interactions between oocytes and cumulus cells ...

  10. Canonical Ensemble Model for Black Hole Horizon of Schwarzschild ...

    Indian Academy of Sciences (India)

    Abstract. In this paper, we use the canonical ensemble model to discuss the radiation of a Schwarzschild–de Sitter black hole on the black hole horizon. Using this model, we calculate the probability distribution from function of the emission shell. And the statistical meaning which compare with the distribution function is ...

  11. Bovine cumulus-granulosa cells contain biologically active retinoid receptors that can respond to retinoic acid

    Directory of Open Access Journals (Sweden)

    Malayer Jerry

    2003-11-01

    Full Text Available Abstract Retinoids, a class of compounds that include retinol and its metabolite, retinoic acid, are absolutely essential for ovarian steroid production, oocyte maturation, and early embryogenesis. Previous studies have detected high concentrations of retinol in bovine large follicles. Further, administration of retinol in vivo and supplementation of retinoic acid during in vitro maturation results in enhanced embryonic development. In the present study, we hypothesized that retinoids administered either in vivo previously or in vitro can exert receptor-mediated effects in cumulus-granulosa cells. Total RNA extracted from in vitro cultured cumulus-granulosa cells was subjected to reverse transcription polymerase chain reaction (RT-PCR and mRNA expression for retinol binding protein (RBP, retinoic acid receptor alpha (RARalpha, retinoic acid receptor beta (RARbeta, retinoic acid receptor gamma (RARgamma, retinoid X receptor alpha (RXRalpha, retinoid X receptor beta (RXRbeta, retinaldehyde dehydrogenase-2 (RALDH-2, and peroxisome proliferator activated receptor gamma (PPARgamma. Transcripts were detected for RBP, RARalpha, RARgamma, RXRalpha, RXRbeta, RALDH-2, and PPARgamma. Expression of RARbeta was not detected in cumulus-granulosa cells. Using western blotting, immunoreactive RARalpha, and RXRbeta protein was also detected in bovine cumulus-granulosa cells. The biological activity of these endogenous retinoid receptors was tested using a transient reporter assay using the pAAV-MCS-betaRARE-Luc vector. Addition of 0.5 and 1 micro molar all-trans retinoic acid significantly (P trans retinol stimulated a mild increase in reporter activity, however, the increase was not statistically significant. Based on these results we conclude that cumulus cells contain endogenously active retinoid receptors and may also be competent to synthesize retinoic acid using the precursor, retinol. These results also indirectly provide evidence that retinoids

  12. Multicomponent ensemble models to forecast induced seismicity

    Science.gov (United States)

    Király-Proag, E.; Gischig, V.; Zechar, J. D.; Wiemer, S.

    2018-01-01

    In recent years, human-induced seismicity has become a more and more relevant topic due to its economic and social implications. Several models and approaches have been developed to explain underlying physical processes or forecast induced seismicity. They range from simple statistical models to coupled numerical models incorporating complex physics. We advocate the need for forecast testing as currently the best method for ascertaining if models are capable to reasonably accounting for key physical governing processes—or not. Moreover, operational forecast models are of great interest to help on-site decision-making in projects entailing induced earthquakes. We previously introduced a standardized framework following the guidelines of the Collaboratory for the Study of Earthquake Predictability, the Induced Seismicity Test Bench, to test, validate, and rank induced seismicity models. In this study, we describe how to construct multicomponent ensemble models based on Bayesian weightings that deliver more accurate forecasts than individual models in the case of Basel 2006 and Soultz-sous-Forêts 2004 enhanced geothermal stimulation projects. For this, we examine five calibrated variants of two significantly different model groups: (1) Shapiro and Smoothed Seismicity based on the seismogenic index, simple modified Omori-law-type seismicity decay, and temporally weighted smoothed seismicity; (2) Hydraulics and Seismicity based on numerically modelled pore pressure evolution that triggers seismicity using the Mohr-Coulomb failure criterion. We also demonstrate how the individual and ensemble models would perform as part of an operational Adaptive Traffic Light System. Investigating seismicity forecasts based on a range of potential injection scenarios, we use forecast periods of different durations to compute the occurrence probabilities of seismic events M ≥ 3. We show that in the case of the Basel 2006 geothermal stimulation the models forecast hazardous levels

  13. Improving a Deep Learning based RGB-D Object Recognition Model by Ensemble Learning

    DEFF Research Database (Denmark)

    Aakerberg, Andreas; Nasrollahi, Kamal; Heder, Thomas

    2018-01-01

    Augmenting RGB images with depth information is a well-known method to significantly improve the recognition accuracy of object recognition models. Another method to im- prove the performance of visual recognition models is ensemble learning. However, this method has not been widely explored...... in combination with deep convolutional neural network based RGB-D object recognition models. Hence, in this paper, we form different ensembles of complementary deep convolutional neural network models, and show that this can be used to increase the recognition performance beyond existing limits. Experiments...

  14. Generalized rate-code model for neuron ensembles with finite populations

    International Nuclear Information System (INIS)

    Hasegawa, Hideo

    2007-01-01

    We have proposed a generalized Langevin-type rate-code model subjected to multiplicative noise, in order to study stationary and dynamical properties of an ensemble containing a finite number N of neurons. Calculations using the Fokker-Planck equation have shown that, owing to the multiplicative noise, our rate model yields various kinds of stationary non-Gaussian distributions such as Γ, inverse-Gaussian-like, and log-normal-like distributions, which have been experimentally observed. The dynamical properties of the rate model have been studied with the use of the augmented moment method (AMM), which was previously proposed by the author from a macroscopic point of view for finite-unit stochastic systems. In the AMM, the original N-dimensional stochastic differential equations (DEs) are transformed into three-dimensional deterministic DEs for the means and fluctuations of local and global variables. The dynamical responses of the neuron ensemble to pulse and sinusoidal inputs calculated by the AMM are in good agreement with those obtained by direct simulation. The synchronization in the neuronal ensemble is discussed. The variabilities of the firing rate and of the interspike interval are shown to increase with increasing magnitude of multiplicative noise, which may be a conceivable origin of the observed large variability in cortical neurons

  15. Force Sensor Based Tool Condition Monitoring Using a Heterogeneous Ensemble Learning Model

    Directory of Open Access Journals (Sweden)

    Guofeng Wang

    2014-11-01

    Full Text Available Tool condition monitoring (TCM plays an important role in improving machining efficiency and guaranteeing workpiece quality. In order to realize reliable recognition of the tool condition, a robust classifier needs to be constructed to depict the relationship between tool wear states and sensory information. However, because of the complexity of the machining process and the uncertainty of the tool wear evolution, it is hard for a single classifier to fit all the collected samples without sacrificing generalization ability. In this paper, heterogeneous ensemble learning is proposed to realize tool condition monitoring in which the support vector machine (SVM, hidden Markov model (HMM and radius basis function (RBF are selected as base classifiers and a stacking ensemble strategy is further used to reflect the relationship between the outputs of these base classifiers and tool wear states. Based on the heterogeneous ensemble learning classifier, an online monitoring system is constructed in which the harmonic features are extracted from force signals and a minimal redundancy and maximal relevance (mRMR algorithm is utilized to select the most prominent features. To verify the effectiveness of the proposed method, a titanium alloy milling experiment was carried out and samples with different tool wear states were collected to build the proposed heterogeneous ensemble learning classifier. Moreover, the homogeneous ensemble learning model and majority voting strategy are also adopted to make a comparison. The analysis and comparison results show that the proposed heterogeneous ensemble learning classifier performs better in both classification accuracy and stability.

  16. Rainfall estimation with TFR model using Ensemble Kalman filter

    Science.gov (United States)

    Asyiqotur Rohmah, Nabila; Apriliani, Erna

    2018-03-01

    Rainfall fluctuation can affect condition of other environment, correlated with economic activity and public health. The increasing of global average temperature is influenced by the increasing of CO2 in the atmosphere, which caused climate change. Meanwhile, the forests as carbon sinks that help keep the carbon cycle and climate change mitigation. Climate change caused by rainfall intensity deviations can affect the economy of a region, and even countries. It encourages research on rainfall associated with an area of forest. In this study, the mathematics model that used is a model which describes the global temperatures, forest cover, and seasonal rainfall called the TFR (temperature, forest cover, and rainfall) model. The model will be discretized first, and then it will be estimated by the method of Ensemble Kalman Filter (EnKF). The result shows that the more ensembles used in estimation, the better the result is. Also, the accurateness of simulation result is influenced by measurement variable. If a variable is measurement data, the result of simulation is better.

  17. Ensemble-based flash-flood modelling: Taking into account hydrodynamic parameters and initial soil moisture uncertainties

    Science.gov (United States)

    Edouard, Simon; Vincendon, Béatrice; Ducrocq, Véronique

    2018-05-01

    Intense precipitation events in the Mediterranean often lead to devastating flash floods (FF). FF modelling is affected by several kinds of uncertainties and Hydrological Ensemble Prediction Systems (HEPS) are designed to take those uncertainties into account. The major source of uncertainty comes from rainfall forcing and convective-scale meteorological ensemble prediction systems can manage it for forecasting purpose. But other sources are related to the hydrological modelling part of the HEPS. This study focuses on the uncertainties arising from the hydrological model parameters and initial soil moisture with aim to design an ensemble-based version of an hydrological model dedicated to Mediterranean fast responding rivers simulations, the ISBA-TOP coupled system. The first step consists in identifying the parameters that have the strongest influence on FF simulations by assuming perfect precipitation. A sensitivity study is carried out first using a synthetic framework and then for several real events and several catchments. Perturbation methods varying the most sensitive parameters as well as initial soil moisture allow designing an ensemble-based version of ISBA-TOP. The first results of this system on some real events are presented. The direct perspective of this work will be to drive this ensemble-based version with the members of a convective-scale meteorological ensemble prediction system to design a complete HEPS for FF forecasting.

  18. Assessing uncertainties in crop and pasture ensemble model simulations of productivity and N2 O emissions.

    Science.gov (United States)

    Ehrhardt, Fiona; Soussana, Jean-François; Bellocchi, Gianni; Grace, Peter; McAuliffe, Russel; Recous, Sylvie; Sándor, Renáta; Smith, Pete; Snow, Val; de Antoni Migliorati, Massimiliano; Basso, Bruno; Bhatia, Arti; Brilli, Lorenzo; Doltra, Jordi; Dorich, Christopher D; Doro, Luca; Fitton, Nuala; Giacomini, Sandro J; Grant, Brian; Harrison, Matthew T; Jones, Stephanie K; Kirschbaum, Miko U F; Klumpp, Katja; Laville, Patricia; Léonard, Joël; Liebig, Mark; Lieffering, Mark; Martin, Raphaël; Massad, Raia S; Meier, Elizabeth; Merbold, Lutz; Moore, Andrew D; Myrgiotis, Vasileios; Newton, Paul; Pattey, Elizabeth; Rolinski, Susanne; Sharp, Joanna; Smith, Ward N; Wu, Lianhai; Zhang, Qing

    2018-02-01

    Simulation models are extensively used to predict agricultural productivity and greenhouse gas emissions. However, the uncertainties of (reduced) model ensemble simulations have not been assessed systematically for variables affecting food security and climate change mitigation, within multi-species agricultural contexts. We report an international model comparison and benchmarking exercise, showing the potential of multi-model ensembles to predict productivity and nitrous oxide (N 2 O) emissions for wheat, maize, rice and temperate grasslands. Using a multi-stage modelling protocol, from blind simulations (stage 1) to partial (stages 2-4) and full calibration (stage 5), 24 process-based biogeochemical models were assessed individually or as an ensemble against long-term experimental data from four temperate grassland and five arable crop rotation sites spanning four continents. Comparisons were performed by reference to the experimental uncertainties of observed yields and N 2 O emissions. Results showed that across sites and crop/grassland types, 23%-40% of the uncalibrated individual models were within two standard deviations (SD) of observed yields, while 42 (rice) to 96% (grasslands) of the models were within 1 SD of observed N 2 O emissions. At stage 1, ensembles formed by the three lowest prediction model errors predicted both yields and N 2 O emissions within experimental uncertainties for 44% and 33% of the crop and grassland growth cycles, respectively. Partial model calibration (stages 2-4) markedly reduced prediction errors of the full model ensemble E-median for crop grain yields (from 36% at stage 1 down to 4% on average) and grassland productivity (from 44% to 27%) and to a lesser and more variable extent for N 2 O emissions. Yield-scaled N 2 O emissions (N 2 O emissions divided by crop yields) were ranked accurately by three-model ensembles across crop species and field sites. The potential of using process-based model ensembles to predict jointly

  19. CarcinoPred-EL: Novel models for predicting the carcinogenicity of chemicals using molecular fingerprints and ensemble learning methods.

    Science.gov (United States)

    Zhang, Li; Ai, Haixin; Chen, Wen; Yin, Zimo; Hu, Huan; Zhu, Junfeng; Zhao, Jian; Zhao, Qi; Liu, Hongsheng

    2017-05-18

    Carcinogenicity refers to a highly toxic end point of certain chemicals, and has become an important issue in the drug development process. In this study, three novel ensemble classification models, namely Ensemble SVM, Ensemble RF, and Ensemble XGBoost, were developed to predict carcinogenicity of chemicals using seven types of molecular fingerprints and three machine learning methods based on a dataset containing 1003 diverse compounds with rat carcinogenicity. Among these three models, Ensemble XGBoost is found to be the best, giving an average accuracy of 70.1 ± 2.9%, sensitivity of 67.0 ± 5.0%, and specificity of 73.1 ± 4.4% in five-fold cross-validation and an accuracy of 70.0%, sensitivity of 65.2%, and specificity of 76.5% in external validation. In comparison with some recent methods, the ensemble models outperform some machine learning-based approaches and yield equal accuracy and higher specificity but lower sensitivity than rule-based expert systems. It is also found that the ensemble models could be further improved if more data were available. As an application, the ensemble models are employed to discover potential carcinogens in the DrugBank database. The results indicate that the proposed models are helpful in predicting the carcinogenicity of chemicals. A web server called CarcinoPred-EL has been built for these models ( http://ccsipb.lnu.edu.cn/toxicity/CarcinoPred-EL/ ).

  20. MODEL SISTEM PREDIKSI ENSEMBLE TOTAL HUJAN BULANAN DENGAN NILAI PEMBOBOT (KASUS WILAYAH KABUPATEN INDRAMAYU

    Directory of Open Access Journals (Sweden)

    Yunus Subagyo Swarinoto

    2014-08-01

    Full Text Available Manajemen air menjadi sangat penting khususnya di wilayah yang rentan terhadap ketersediaan air. Mengingat hujan di atas normal dapat mengakibatkan banjir, sedangkan hujan di bawah normal mengakibatkan kekeringan. Untuk itu prediksi unsur iklim hujan ini menjadi penting. Model sistem prediksi ensemble berbasis model sistem prediksi tunggal ANFIS, Wavelet-ANFIS, Wavelet ARIMA, dan ARIMA total hujan bulanan telah disimulasikan di wilayah Kabupaten Indramayu. Model sistem prediksi ensemble total hujan bulanan ini dibentuk dengan teknik pembobotan. Nilai pembobot didasarkan pada nilai koefisien korelasi Pearson (r yang diperoleh selama masa pelatihan dengan series data 1991-2000. Hasil pengolahan data 2001-2009 menunjukkan kisaran nilai r didapat 0,45-0,83 untuk ANFIS; 0,20-0,53 untuk Wavelet-ANFIS; 0,50-0,95 untuk Wavelet-ARIMA; 0,14-0,66 untuk ARIMA; dan 0,58-0,94 untuk Ensemble. Secara spasial, luaran model sistem prediksi ensemble total hujan bulanan di wilayah Kabupaten Indramayu menunjukkan hasil yang konsisten lebih baik daripada luaran model sistem prediksi tunggal pembentuknya.   Water management is very important especially for region which is vulnarable to the water availability. Above normal rainfal condition causes flood, meanwhile below normal one triggers to the drought occurences. Coping with this situation, the rainfall prediction output is needed. The ensemble prediction system model (EPSM based on several single prediction system models (SPSMs such as ANFIS, Wavelet-ANFIS, Wavelet ARIMA, and ARIMA on monthly rainfall total, has been simulated within Indramayu district. The EPSM was developed and based on the weighting technique. This weighting is computed based on the value of Pearson correlation coefficient (r which has been gained during the training period of 1991-2000. Results of 2001-2009 model running show the value of r are 0,45-0,83 for ANFIS; 0,20-0,53 for Wavelet- ANFIS;  0,50-0,95 for Wavelet-ARIMA; 0,14-0,66 for

  1. Thermodynamic state ensemble models of cis-regulation.

    Directory of Open Access Journals (Sweden)

    Marc S Sherman

    Full Text Available A major goal in computational biology is to develop models that accurately predict a gene's expression from its surrounding regulatory DNA. Here we present one class of such models, thermodynamic state ensemble models. We describe the biochemical derivation of the thermodynamic framework in simple terms, and lay out the mathematical components that comprise each model. These components include (1 the possible states of a promoter, where a state is defined as a particular arrangement of transcription factors bound to a DNA promoter, (2 the binding constants that describe the affinity of the protein-protein and protein-DNA interactions that occur in each state, and (3 whether each state is capable of transcribing. Using these components, we demonstrate how to compute a cis-regulatory function that encodes the probability of a promoter being active. Our intention is to provide enough detail so that readers with little background in thermodynamics can compose their own cis-regulatory functions. To facilitate this goal, we also describe a matrix form of the model that can be easily coded in any programming language. This formalism has great flexibility, which we show by illustrating how phenomena such as competition between transcription factors and cooperativity are readily incorporated into these models. Using this framework, we also demonstrate that Michaelis-like functions, another class of cis-regulatory models, are a subset of the thermodynamic framework with specific assumptions. By recasting Michaelis-like functions as thermodynamic functions, we emphasize the relationship between these models and delineate the specific circumstances representable by each approach. Application of thermodynamic state ensemble models is likely to be an important tool in unraveling the physical basis of combinatorial cis-regulation and in generating formalisms that accurately predict gene expression from DNA sequence.

  2. Implication of the oligomeric state of the N-terminal PTX3 domain in cumulus matrix assembly.

    Science.gov (United States)

    Ievoli, Elena; Lindstedt, Ragnar; Inforzato, Antonio; Camaioni, Antonella; Palone, Francesca; Day, Anthony J; Mantovani, Alberto; Salvatori, Giovanni; Salustri, Antonietta

    2011-06-01

    Pentraxin 3 (PTX3) plays a key role in the formation of the hyaluronan-rich matrix of the cumulus oophorus surrounding ovulated eggs that is required for successful fertilization and female fertility. PTX3 is a multimeric protein consisting of eight identical protomers held together by a combination of non-covalent interactions and disulfide bonds. Recent findings suggest that the oligomeric status of PTX3 is important for stabilizing the cumulus matrix. Because the role of PTX3 in the cumulus resides in the unique N-terminal sequence of the protomer, we investigated further this issue by testing the ability of distinct Cys/Ser mutants of recombinant N-terminal region of PTX3 (N(_)PTX3) with different oligomeric arrangement to promote in vitro normal expansion in cumuli from Ptx3-null mice. Here we report that the dimer of the N(_)PTX3 is unable to rescue cumulus matrix organization, and that the tetrameric assembly of the protein is the minimal oligomeric state required for accomplishing this function. We have previously demonstrated that PTX3 binds to HCs of IαI and TSG-6, which are essential for cumulus matrix formation and able to interact with hyaluronan. Interestingly, here we show by solid-phase binding experiments that the dimer of the N(_)PTX3 retains the ability to bind to both IαI and TSG-6, suggesting that the octameric structure of PTX3 provides multiple binding sites for each of these ligands. These findings support the hypothesis that PTX3 contributes to cumulus matrix organization by cross-linking HA polymers through interactions with multiple HCs of IαI and/or TSG-6. The N-terminal PTX3 tetrameric oligomerization was recently reported to be also required for recognition and inhibition of FGF2. Given that this growth factor has been detected in the mammalian preovulatory follicle, we wondered whether FGF2 negatively influences cumulus expansion and PTX3 may also serve in vivo to antagonize its activity. We found that a molar excess of FGF2, above

  3. A model ensemble for projecting multi‐decadal coastal cliff retreat during the 21st century

    Science.gov (United States)

    Limber, Patrick; Barnard, Patrick; Vitousek, Sean; Erikson, Li

    2018-01-01

    Sea cliff retreat rates are expected to accelerate with rising sea levels during the 21st century. Here we develop an approach for a multi‐model ensemble that efficiently projects time‐averaged sea cliff retreat over multi‐decadal time scales and large (>50 km) spatial scales. The ensemble consists of five simple 1‐D models adapted from the literature that relate sea cliff retreat to wave impacts, sea level rise (SLR), historical cliff behavior, and cross‐shore profile geometry. Ensemble predictions are based on Monte Carlo simulations of each individual model, which account for the uncertainty of model parameters. The consensus of the individual models also weights uncertainty, such that uncertainty is greater when predictions from different models do not agree. A calibrated, but unvalidated, ensemble was applied to the 475 km‐long coastline of Southern California (USA), with 4 SLR scenarios of 0.5, 0.93, 1.5, and 2 m by 2100. Results suggest that future retreat rates could increase relative to mean historical rates by more than two‐fold for the higher SLR scenarios, causing an average total land loss of 19 – 41 m by 2100. However, model uncertainty ranges from +/‐ 5 – 15 m, reflecting the inherent difficulties of projecting cliff retreat over multiple decades. To enhance ensemble performance, future work could include weighting each model by its skill in matching observations in different morphological settings

  4. Impacts of calibration strategies and ensemble methods on ensemble flood forecasting over Lanjiang basin, Southeast China

    Science.gov (United States)

    Liu, Li; Xu, Yue-Ping

    2017-04-01

    Ensemble flood forecasting driven by numerical weather prediction products is becoming more commonly used in operational flood forecasting applications.In this study, a hydrological ensemble flood forecasting system based on Variable Infiltration Capacity (VIC) model and quantitative precipitation forecasts from TIGGE dataset is constructed for Lanjiang Basin, Southeast China. The impacts of calibration strategies and ensemble methods on the performance of the system are then evaluated.The hydrological model is optimized by parallel programmed ɛ-NSGAII multi-objective algorithm and two respectively parameterized models are determined to simulate daily flows and peak flows coupled with a modular approach.The results indicatethat the ɛ-NSGAII algorithm permits more efficient optimization and rational determination on parameter setting.It is demonstrated that the multimodel ensemble streamflow mean have better skills than the best singlemodel ensemble mean (ECMWF) and the multimodel ensembles weighted on members and skill scores outperform other multimodel ensembles. For typical flood event, it is proved that the flood can be predicted 3-4 days in advance, but the flows in rising limb can be captured with only 1-2 days ahead due to the flash feature. With respect to peak flows selected by Peaks Over Threshold approach, the ensemble means from either singlemodel or multimodels are generally underestimated as the extreme values are smoothed out by ensemble process.

  5. EnsembleGraph: Interactive Visual Analysis of Spatial-Temporal Behavior for Ensemble Simulation Data

    Energy Technology Data Exchange (ETDEWEB)

    Shu, Qingya; Guo, Hanqi; Che, Limei; Yuan, Xiaoru; Liu, Junfeng; Liang, Jie

    2016-04-19

    We present a novel visualization framework—EnsembleGraph— for analyzing ensemble simulation data, in order to help scientists understand behavior similarities between ensemble members over space and time. A graph-based representation is used to visualize individual spatiotemporal regions with similar behaviors, which are extracted by hierarchical clustering algorithms. A user interface with multiple-linked views is provided, which enables users to explore, locate, and compare regions that have similar behaviors between and then users can investigate and analyze the selected regions in detail. The driving application of this paper is the studies on regional emission influences over tropospheric ozone, which is based on ensemble simulations conducted with different anthropogenic emission absences using the MOZART-4 (model of ozone and related tracers, version 4) model. We demonstrate the effectiveness of our method by visualizing the MOZART-4 ensemble simulation data and evaluating the relative regional emission influences on tropospheric ozone concentrations. Positive feedbacks from domain experts and two case studies prove efficiency of our method.

  6. Ensemble catchment hydrological modelling for climate change impact analysis

    Science.gov (United States)

    Vansteenkiste, Thomas; Ntegeka, Victor; Willems, Patrick

    2014-05-01

    It is vital to investigate how the hydrological model structure affects the climate change impact given that future changes not in the range for which the models were calibrated or validated are likely. Thus an ensemble modelling approach which involves a diversity of models with different structures such as spatial resolutions and process descriptions is crucial. The ensemble modelling approach was applied to a set of models: from the lumped conceptual models NAM, PDM and VHM, an intermediate detailed and distributed model WetSpa, to the highly detailed and fully distributed model MIKE-SHE. Explicit focus was given to the high and low flow extremes. All models were calibrated for sub flows and quick flows derived from rainfall and potential evapotranspiration (ETo) time series. In general, all models were able to produce reliable estimates of the flow regimes under the current climate for extreme peak and low flows. An intercomparison of the low and high flow changes under changed climatic conditions was made using climate scenarios tailored for extremes. Tailoring was important for two reasons. First, since the use of many scenarios was not feasible it was necessary to construct few scenarios that would reasonably represent the range of extreme impacts. Second, scenarios would be more informative as changes in high and low flows would be easily traced to changes of ETo and rainfall; the tailored scenarios are constructed using seasonal changes that are defined using different levels of magnitude (high, mean and low) for rainfall and ETo. After simulation of these climate scenarios in the five hydrological models, close agreement was found among the models. The different models predicted similar range of peak flow changes. For the low flows, however, the differences in the projected impact range by different hydrological models was larger, particularly for the drier scenarios. This suggests that the hydrological model structure is critical in low flow predictions

  7. Improving sub-pixel imperviousness change prediction by ensembling heterogeneous non-linear regression models

    Science.gov (United States)

    Drzewiecki, Wojciech

    2016-12-01

    In this work nine non-linear regression models were compared for sub-pixel impervious surface area mapping from Landsat images. The comparison was done in three study areas both for accuracy of imperviousness coverage evaluation in individual points in time and accuracy of imperviousness change assessment. The performance of individual machine learning algorithms (Cubist, Random Forest, stochastic gradient boosting of regression trees, k-nearest neighbors regression, random k-nearest neighbors regression, Multivariate Adaptive Regression Splines, averaged neural networks, and support vector machines with polynomial and radial kernels) was also compared with the performance of heterogeneous model ensembles constructed from the best models trained using particular techniques. The results proved that in case of sub-pixel evaluation the most accurate prediction of change may not necessarily be based on the most accurate individual assessments. When single methods are considered, based on obtained results Cubist algorithm may be advised for Landsat based mapping of imperviousness for single dates. However, Random Forest may be endorsed when the most reliable evaluation of imperviousness change is the primary goal. It gave lower accuracies for individual assessments, but better prediction of change due to more correlated errors of individual predictions. Heterogeneous model ensembles performed for individual time points assessments at least as well as the best individual models. In case of imperviousness change assessment the ensembles always outperformed single model approaches. It means that it is possible to improve the accuracy of sub-pixel imperviousness change assessment using ensembles of heterogeneous non-linear regression models.

  8. Ensemble method for dengue prediction.

    Science.gov (United States)

    Buczak, Anna L; Baugher, Benjamin; Moniz, Linda J; Bagley, Thomas; Babin, Steven M; Guven, Erhan

    2018-01-01

    In the 2015 NOAA Dengue Challenge, participants made three dengue target predictions for two locations (Iquitos, Peru, and San Juan, Puerto Rico) during four dengue seasons: 1) peak height (i.e., maximum weekly number of cases during a transmission season; 2) peak week (i.e., week in which the maximum weekly number of cases occurred); and 3) total number of cases reported during a transmission season. A dengue transmission season is the 12-month period commencing with the location-specific, historical week with the lowest number of cases. At the beginning of the Dengue Challenge, participants were provided with the same input data for developing the models, with the prediction testing data provided at a later date. Our approach used ensemble models created by combining three disparate types of component models: 1) two-dimensional Method of Analogues models incorporating both dengue and climate data; 2) additive seasonal Holt-Winters models with and without wavelet smoothing; and 3) simple historical models. Of the individual component models created, those with the best performance on the prior four years of data were incorporated into the ensemble models. There were separate ensembles for predicting each of the three targets at each of the two locations. Our ensemble models scored higher for peak height and total dengue case counts reported in a transmission season for Iquitos than all other models submitted to the Dengue Challenge. However, the ensemble models did not do nearly as well when predicting the peak week. The Dengue Challenge organizers scored the dengue predictions of the Challenge participant groups. Our ensemble approach was the best in predicting the total number of dengue cases reported for transmission season and peak height for Iquitos, Peru.

  9. Ensemble method for dengue prediction.

    Directory of Open Access Journals (Sweden)

    Anna L Buczak

    Full Text Available In the 2015 NOAA Dengue Challenge, participants made three dengue target predictions for two locations (Iquitos, Peru, and San Juan, Puerto Rico during four dengue seasons: 1 peak height (i.e., maximum weekly number of cases during a transmission season; 2 peak week (i.e., week in which the maximum weekly number of cases occurred; and 3 total number of cases reported during a transmission season. A dengue transmission season is the 12-month period commencing with the location-specific, historical week with the lowest number of cases. At the beginning of the Dengue Challenge, participants were provided with the same input data for developing the models, with the prediction testing data provided at a later date.Our approach used ensemble models created by combining three disparate types of component models: 1 two-dimensional Method of Analogues models incorporating both dengue and climate data; 2 additive seasonal Holt-Winters models with and without wavelet smoothing; and 3 simple historical models. Of the individual component models created, those with the best performance on the prior four years of data were incorporated into the ensemble models. There were separate ensembles for predicting each of the three targets at each of the two locations.Our ensemble models scored higher for peak height and total dengue case counts reported in a transmission season for Iquitos than all other models submitted to the Dengue Challenge. However, the ensemble models did not do nearly as well when predicting the peak week.The Dengue Challenge organizers scored the dengue predictions of the Challenge participant groups. Our ensemble approach was the best in predicting the total number of dengue cases reported for transmission season and peak height for Iquitos, Peru.

  10. The egg model - a geological ensemble for reservoir simulation

    NARCIS (Netherlands)

    Jansen, J.D.; Fonseca, R.M.; Kahrobaei, S.; Siraj, M.M.; Essen, van G.M.; Hof, Van den P.M.J.

    2014-01-01

    The ‘Egg Model’ is a synthetic reservoir model consisting of an ensemble of 101 relatively small three-dimensional realizations of a channelized oil reservoir produced under water flooding conditions with eight water injectors and four oil producers. It has been used in numerous publications to

  11. The unusual state of the cumulus oophorus and of sperm behaviour within it, in the musk shrew, Suncus murinus.

    Science.gov (United States)

    Bedford, J M; Mori, T; Oda, S

    1997-05-01

    In the musk shrew, Suncus murinus, the behaviour of the cumulus-egg complex and its interaction with spermatozoa were unusual in several respects. The cumulus oophorus was ovulated about 15.5 h after mating or treatment with hCG as a hyaluronidase-insensitive matrix-free ball of cells which remained for relatively long periods of about 14 h around fertilized, and for about 24 h around unfertilized eggs. As a probable function of the small number of up to about 10 or 20 spermatozoa that generally reached the oviduct ampulla from isthmic crypts, there was often a delay of up to 10 h after ovulation before most eggs were penetrated. Soon after ovulation, however, the corona radiata retreated progressively from the zona pellucida, creating a closed perizonal space within the cumulus oophorus. Usually, most spermatozoa that did reach the ampulla were found within a cumulus and generally within that perizonal space. However, whereas the acrosome was intact among the few free ampullary spermatozoa, and in those adhering to the zona of cumulus-free eggs after delayed mating, all spermatozoa seen moving within the cumulus or adhering to the zona of unfertilized eggs had shed the giant acrosome. In accord with current observations in other shrews, the cumulus in Suncus may therefore function not only to sequester spermatozoa, but also as an essential mediator of fertilization-probably by inducing the acrosome reaction. In the absence of the acrosomal carapace that expresses the zona receptors in most mammals, fertilizing Suncus spermatozoa could use an unusual array of barbs on the exposed perforatorium to attach to the zona pellucida.

  12. Coastal aquifer management under parameter uncertainty: Ensemble surrogate modeling based simulation-optimization

    Science.gov (United States)

    Janardhanan, S.; Datta, B.

    2011-12-01

    Surrogate models are widely used to develop computationally efficient simulation-optimization models to solve complex groundwater management problems. Artificial intelligence based models are most often used for this purpose where they are trained using predictor-predictand data obtained from a numerical simulation model. Most often this is implemented with the assumption that the parameters and boundary conditions used in the numerical simulation model are perfectly known. However, in most practical situations these values are uncertain. Under these circumstances the application of such approximation surrogates becomes limited. In our study we develop a surrogate model based coupled simulation optimization methodology for determining optimal pumping strategies for coastal aquifers considering parameter uncertainty. An ensemble surrogate modeling approach is used along with multiple realization optimization. The methodology is used to solve a multi-objective coastal aquifer management problem considering two conflicting objectives. Hydraulic conductivity and the aquifer recharge are considered as uncertain values. Three dimensional coupled flow and transport simulation model FEMWATER is used to simulate the aquifer responses for a number of scenarios corresponding to Latin hypercube samples of pumping and uncertain parameters to generate input-output patterns for training the surrogate models. Non-parametric bootstrap sampling of this original data set is used to generate multiple data sets which belong to different regions in the multi-dimensional decision and parameter space. These data sets are used to train and test multiple surrogate models based on genetic programming. The ensemble of surrogate models is then linked to a multi-objective genetic algorithm to solve the pumping optimization problem. Two conflicting objectives, viz, maximizing total pumping from beneficial wells and minimizing the total pumping from barrier wells for hydraulic control of

  13. A comparison of resampling schemes for estimating model observer performance with small ensembles

    Science.gov (United States)

    Elshahaby, Fatma E. A.; Jha, Abhinav K.; Ghaly, Michael; Frey, Eric C.

    2017-09-01

    In objective assessment of image quality, an ensemble of images is used to compute the 1st and 2nd order statistics of the data. Often, only a finite number of images is available, leading to the issue of statistical variability in numerical observer performance. Resampling-based strategies can help overcome this issue. In this paper, we compared different combinations of resampling schemes (the leave-one-out (LOO) and the half-train/half-test (HT/HT)) and model observers (the conventional channelized Hotelling observer (CHO), channelized linear discriminant (CLD) and channelized quadratic discriminant). Observer performance was quantified by the area under the ROC curve (AUC). For a binary classification task and for each observer, the AUC value for an ensemble size of 2000 samples per class served as a gold standard for that observer. Results indicated that each observer yielded a different performance depending on the ensemble size and the resampling scheme. For a small ensemble size, the combination [CHO, HT/HT] had more accurate rankings than the combination [CHO, LOO]. Using the LOO scheme, the CLD and CHO had similar performance for large ensembles. However, the CLD outperformed the CHO and gave more accurate rankings for smaller ensembles. As the ensemble size decreased, the performance of the [CHO, LOO] combination seriously deteriorated as opposed to the [CLD, LOO] combination. Thus, it might be desirable to use the CLD with the LOO scheme when smaller ensemble size is available.

  14. A Bayesian ensemble of sensitivity measures for severe accident modeling

    Energy Technology Data Exchange (ETDEWEB)

    Hoseyni, Seyed Mohsen [Department of Basic Sciences, East Tehran Branch, Islamic Azad University, Tehran (Iran, Islamic Republic of); Di Maio, Francesco, E-mail: francesco.dimaio@polimi.it [Energy Department, Politecnico di Milano, Via La Masa 34, 20156 Milano (Italy); Vagnoli, Matteo [Energy Department, Politecnico di Milano, Via La Masa 34, 20156 Milano (Italy); Zio, Enrico [Energy Department, Politecnico di Milano, Via La Masa 34, 20156 Milano (Italy); Chair on System Science and Energetic Challenge, Fondation EDF – Electricite de France Ecole Centrale, Paris, and Supelec, Paris (France); Pourgol-Mohammad, Mohammad [Department of Mechanical Engineering, Sahand University of Technology, Tabriz (Iran, Islamic Republic of)

    2015-12-15

    Highlights: • We propose a sensitivity analysis (SA) method based on a Bayesian updating scheme. • The Bayesian updating schemes adjourns an ensemble of sensitivity measures. • Bootstrap replicates of a severe accident code output are fed to the Bayesian scheme. • The MELCOR code simulates the fission products release of LOFT LP-FP-2 experiment. • Results are compared with those of traditional SA methods. - Abstract: In this work, a sensitivity analysis framework is presented to identify the relevant input variables of a severe accident code, based on an incremental Bayesian ensemble updating method. The proposed methodology entails: (i) the propagation of the uncertainty in the input variables through the severe accident code; (ii) the collection of bootstrap replicates of the input and output of limited number of simulations for building a set of finite mixture models (FMMs) for approximating the probability density function (pdf) of the severe accident code output of the replicates; (iii) for each FMM, the calculation of an ensemble of sensitivity measures (i.e., input saliency, Hellinger distance and Kullback–Leibler divergence) and the updating when a new piece of evidence arrives, by a Bayesian scheme, based on the Bradley–Terry model for ranking the most relevant input model variables. An application is given with respect to a limited number of simulations of a MELCOR severe accident model describing the fission products release in the LP-FP-2 experiment of the loss of fluid test (LOFT) facility, which is a scaled-down facility of a pressurized water reactor (PWR).

  15. Data assimilation for groundwater flow modelling using Unbiased Ensemble Square Root Filter: Case study in Guantao, North China Plain

    Science.gov (United States)

    Li, N.; Kinzelbach, W.; Li, H.; Li, W.; Chen, F.; Wang, L.

    2017-12-01

    Data assimilation techniques are widely used in hydrology to improve the reliability of hydrological models and to reduce model predictive uncertainties. This provides critical information for decision makers in water resources management. This study aims to evaluate a data assimilation system for the Guantao groundwater flow model coupled with a one-dimensional soil column simulation (Hydrus 1D) using an Unbiased Ensemble Square Root Filter (UnEnSRF) originating from the Ensemble Kalman Filter (EnKF) to update parameters and states, separately or simultaneously. To simplify the coupling between unsaturated and saturated zone, a linear relationship obtained from analyzing inputs to and outputs from Hydrus 1D is applied in the data assimilation process. Unlike EnKF, the UnEnSRF updates parameter ensemble mean and ensemble perturbations separately. In order to keep the ensemble filter working well during the data assimilation, two factors are introduced in the study. One is called damping factor to dampen the update amplitude of the posterior ensemble mean to avoid nonrealistic values. The other is called inflation factor to relax the posterior ensemble perturbations close to prior to avoid filter inbreeding problems. The sensitivities of the two factors are studied and their favorable values for the Guantao model are determined. The appropriate observation error and ensemble size were also determined to facilitate the further analysis. This study demonstrated that the data assimilation of both model parameters and states gives a smaller model prediction error but with larger uncertainty while the data assimilation of only model states provides a smaller predictive uncertainty but with a larger model prediction error. Data assimilation in a groundwater flow model will improve model prediction and at the same time make the model converge to the true parameters, which provides a successful base for applications in real time modelling or real time controlling strategies

  16. On Ensemble Nonlinear Kalman Filtering with Symmetric Analysis Ensembles

    KAUST Repository

    Luo, Xiaodong

    2010-09-19

    The ensemble square root filter (EnSRF) [1, 2, 3, 4] is a popular method for data assimilation in high dimensional systems (e.g., geophysics models). Essentially the EnSRF is a Monte Carlo implementation of the conventional Kalman filter (KF) [5, 6]. It is mainly different from the KF at the prediction steps, where it is some ensembles, rather then the means and covariance matrices, of the system state that are propagated forward. In doing this, the EnSRF is computationally more efficient than the KF, since propagating a covariance matrix forward in high dimensional systems is prohibitively expensive. In addition, the EnSRF is also very convenient in implementation. By propagating the ensembles of the system state, the EnSRF can be directly applied to nonlinear systems without any change in comparison to the assimilation procedures in linear systems. However, by adopting the Monte Carlo method, the EnSRF also incurs certain sampling errors. One way to alleviate this problem is to introduce certain symmetry to the ensembles, which can reduce the sampling errors and spurious modes in evaluation of the means and covariances of the ensembles [7]. In this contribution, we present two methods to produce symmetric ensembles. One is based on the unscented transform [8, 9], which leads to the unscented Kalman filter (UKF) [8, 9] and its variant, the ensemble unscented Kalman filter (EnUKF) [7]. The other is based on Stirling’s interpolation formula (SIF), which results in the divided difference filter (DDF) [10]. Here we propose a simplified divided difference filter (sDDF) in the context of ensemble filtering. The similarity and difference between the sDDF and the EnUKF will be discussed. Numerical experiments will also be conducted to investigate the performance of the sDDF and the EnUKF, and compare them to a well‐established EnSRF, the ensemble transform Kalman filter (ETKF) [2].

  17. Data-driven reverse engineering of signaling pathways using ensembles of dynamic models.

    Directory of Open Access Journals (Sweden)

    David Henriques

    2017-02-01

    Full Text Available Despite significant efforts and remarkable progress, the inference of signaling networks from experimental data remains very challenging. The problem is particularly difficult when the objective is to obtain a dynamic model capable of predicting the effect of novel perturbations not considered during model training. The problem is ill-posed due to the nonlinear nature of these systems, the fact that only a fraction of the involved proteins and their post-translational modifications can be measured, and limitations on the technologies used for growing cells in vitro, perturbing them, and measuring their variations. As a consequence, there is a pervasive lack of identifiability. To overcome these issues, we present a methodology called SELDOM (enSEmbLe of Dynamic lOgic-based Models, which builds an ensemble of logic-based dynamic models, trains them to experimental data, and combines their individual simulations into an ensemble prediction. It also includes a model reduction step to prune spurious interactions and mitigate overfitting. SELDOM is a data-driven method, in the sense that it does not require any prior knowledge of the system: the interaction networks that act as scaffolds for the dynamic models are inferred from data using mutual information. We have tested SELDOM on a number of experimental and in silico signal transduction case-studies, including the recent HPN-DREAM breast cancer challenge. We found that its performance is highly competitive compared to state-of-the-art methods for the purpose of recovering network topology. More importantly, the utility of SELDOM goes beyond basic network inference (i.e. uncovering static interaction networks: it builds dynamic (based on ordinary differential equation models, which can be used for mechanistic interpretations and reliable dynamic predictions in new experimental conditions (i.e. not used in the training. For this task, SELDOM's ensemble prediction is not only consistently better

  18. Numerical simulation of a rare winter hailstorm event over Delhi, India on 17 January 2013

    KAUST Repository

    Chevuturi, A.; Dimri, A. P.; Gunturu, Udaya

    2014-01-01

    January 2013 (16:00–18:00 UTC) occurring over NCR is investigated. The storm is simulated using the Weather Research and Forecasting (WRF) model with the Goddard Cumulus Ensemble (GCE) microphysics scheme with two different options: hail and graupel

  19. Ensemble forecasting of species distributions.

    Science.gov (United States)

    Araújo, Miguel B; New, Mark

    2007-01-01

    Concern over implications of climate change for biodiversity has led to the use of bioclimatic models to forecast the range shifts of species under future climate-change scenarios. Recent studies have demonstrated that projections by alternative models can be so variable as to compromise their usefulness for guiding policy decisions. Here, we advocate the use of multiple models within an ensemble forecasting framework and describe alternative approaches to the analysis of bioclimatic ensembles, including bounding box, consensus and probabilistic techniques. We argue that, although improved accuracy can be delivered through the traditional tasks of trying to build better models with improved data, more robust forecasts can also be achieved if ensemble forecasts are produced and analysed appropriately.

  20. A novel hybrid decomposition-and-ensemble model based on CEEMD and GWO for short-term PM2.5 concentration forecasting

    Science.gov (United States)

    Niu, Mingfei; Wang, Yufang; Sun, Shaolong; Li, Yongwu

    2016-06-01

    To enhance prediction reliability and accuracy, a hybrid model based on the promising principle of "decomposition and ensemble" and a recently proposed meta-heuristic called grey wolf optimizer (GWO) is introduced for daily PM2.5 concentration forecasting. Compared with existing PM2.5 forecasting methods, this proposed model has improved the prediction accuracy and hit rates of directional prediction. The proposed model involves three main steps, i.e., decomposing the original PM2.5 series into several intrinsic mode functions (IMFs) via complementary ensemble empirical mode decomposition (CEEMD) for simplifying the complex data; individually predicting each IMF with support vector regression (SVR) optimized by GWO; integrating all predicted IMFs for the ensemble result as the final prediction by another SVR optimized by GWO. Seven benchmark models, including single artificial intelligence (AI) models, other decomposition-ensemble models with different decomposition methods and models with the same decomposition-ensemble method but optimized by different algorithms, are considered to verify the superiority of the proposed hybrid model. The empirical study indicates that the proposed hybrid decomposition-ensemble model is remarkably superior to all considered benchmark models for its higher prediction accuracy and hit rates of directional prediction.

  1. Influence of horizontal resolution and ensemble size on model performance

    CSIR Research Space (South Africa)

    Dalton, A

    2014-10-01

    Full Text Available Conference of South African Society for Atmospheric Sciences (SASAS), Potchefstroom, 1-2 October 2014 Influence of horizontal resolution and ensemble size on model performance Amaris Dalton*¹, Willem A. Landman ¹ʾ² ¹Departmen of Geography, Geo...

  2. Future changes in tropical cyclone activity projected by multi-physics and multi-SST ensemble experiments using the 60-km-mesh MRI-AGCM

    Energy Technology Data Exchange (ETDEWEB)

    Murakami, Hiroyuki [Japan Agency for Marine-Earth Science and Technology (JAMSTEC)/Meteorological Research Institute (MRI), Tsukuba, Ibaraki (Japan); University of Hawaii at Manoa, International Pacific Research Center, School of Ocean and Earth Science and Technology, Honolulu, Hawaii (United States); Mizuta, Ryo; Shindo, Eiki [Meteorological Research Institute (MRI), Climate Research Department, Tsukuba, Ibaraki (Japan)

    2012-11-15

    Uncertainties in projected future changes in tropical cyclone (TC) activity are investigated using future (2075-2099) ensemble projections of global warming under the Intergovernmental Panel on Climate Change (IPCC) A1B scenario. Twelve ensemble experiments are performed using three different cumulus convection schemes and four different assumptions for prescribed future sea surface temperatures (SSTs). All ensemble experiments consistently project significant reductions in global and hemispheric TC genesis numbers as well as reductions in TC frequency of occurrence (TCF) and TC genesis frequency (TGF) in the western North Pacific, South Indian Ocean, and South Pacific Ocean. TCF and TGF are projected to increase over the central Pacific which is consistent with the findings of Li et al. (2010). Inter-experimental variations of projected future changes in TGF and TC genesis number are caused mainly by differences in large-scale dynamical parameters and SST anomalies. Thermodynamic parameters are of secondary importance for variations in TGF and TC genesis number. These results imply that differences in SST spatial patterns can cause substantial variations and uncertainties in projected future changes of TGF and TC numbers at ocean-basin scales. (orig.)

  3. New technique for ensemble dressing combining Multimodel SuperEnsemble and precipitation PDF

    Science.gov (United States)

    Cane, D.; Milelli, M.

    2009-09-01

    The Multimodel SuperEnsemble technique (Krishnamurti et al., Science 285, 1548-1550, 1999) is a postprocessing method for the estimation of weather forecast parameters reducing direct model output errors. It differs from other ensemble analysis techniques by the use of an adequate weighting of the input forecast models to obtain a combined estimation of meteorological parameters. Weights are calculated by least-square minimization of the difference between the model and the observed field during a so-called training period. Although it can be applied successfully on the continuous parameters like temperature, humidity, wind speed and mean sea level pressure (Cane and Milelli, Meteorologische Zeitschrift, 15, 2, 2006), the Multimodel SuperEnsemble gives good results also when applied on the precipitation, a parameter quite difficult to handle with standard post-processing methods. Here we present our methodology for the Multimodel precipitation forecasts applied on a wide spectrum of results over Piemonte very dense non-GTS weather station network. We will focus particularly on an accurate statistical method for bias correction and on the ensemble dressing in agreement with the observed precipitation forecast-conditioned PDF. Acknowledgement: this work is supported by the Italian Civil Defence Department.

  4. Ensemble-based Kalman Filters in Strongly Nonlinear Dynamics

    Institute of Scientific and Technical Information of China (English)

    Zhaoxia PU; Joshua HACKER

    2009-01-01

    This study examines the effectiveness of ensemble Kalman filters in data assimilation with the strongly nonlinear dynamics of the Lorenz-63 model, and in particular their use in predicting the regime transition that occurs when the model jumps from one basin of attraction to the other. Four configurations of the ensemble-based Kalman filtering data assimilation techniques, including the ensemble Kalman filter, ensemble adjustment Kalman filter, ensemble square root filter and ensemble transform Kalman filter, are evaluated with their ability in predicting the regime transition (also called phase transition) and also are compared in terms of their sensitivity to both observational and sampling errors. The sensitivity of each ensemble-based filter to the size of the ensemble is also examined.

  5. The Drag-based Ensemble Model (DBEM) for Coronal Mass Ejection Propagation

    Science.gov (United States)

    Dumbović, Mateja; Čalogović, Jaša; Vršnak, Bojan; Temmer, Manuela; Mays, M. Leila; Veronig, Astrid; Piantschitsch, Isabell

    2018-02-01

    The drag-based model for heliospheric propagation of coronal mass ejections (CMEs) is a widely used analytical model that can predict CME arrival time and speed at a given heliospheric location. It is based on the assumption that the propagation of CMEs in interplanetary space is solely under the influence of magnetohydrodynamical drag, where CME propagation is determined based on CME initial properties as well as the properties of the ambient solar wind. We present an upgraded version, the drag-based ensemble model (DBEM), that covers ensemble modeling to produce a distribution of possible ICME arrival times and speeds. Multiple runs using uncertainty ranges for the input values can be performed in almost real-time, within a few minutes. This allows us to define the most likely ICME arrival times and speeds, quantify prediction uncertainties, and determine forecast confidence. The performance of the DBEM is evaluated and compared to that of ensemble WSA-ENLIL+Cone model (ENLIL) using the same sample of events. It is found that the mean error is ME = ‑9.7 hr, mean absolute error MAE = 14.3 hr, and root mean square error RMSE = 16.7 hr, which is somewhat higher than, but comparable to ENLIL errors (ME = ‑6.1 hr, MAE = 12.8 hr and RMSE = 14.4 hr). Overall, DBEM and ENLIL show a similar performance. Furthermore, we find that in both models fast CMEs are predicted to arrive earlier than observed, most likely owing to the physical limitations of models, but possibly also related to an overestimation of the CME initial speed for fast CMEs.

  6. Compressing an Ensemble with Statistical Models: An Algorithm for Global 3D Spatio-Temporal Temperature

    KAUST Repository

    Castruccio, Stefano; Genton, Marc G.

    2015-01-01

    One of the main challenges when working with modern climate model ensembles is the increasingly larger size of the data produced, and the consequent difficulty in storing large amounts of spatio-temporally resolved information. Many compression algorithms can be used to mitigate this problem, but since they are designed to compress generic scientific data sets, they do not account for the nature of climate model output and they compress only individual simulations. In this work, we propose a different, statistics-based approach that explicitly accounts for the space-time dependence of the data for annual global three-dimensional temperature fields in an initial condition ensemble. The set of estimated parameters is small (compared to the data size) and can be regarded as a summary of the essential structure of the ensemble output; therefore, it can be used to instantaneously reproduce the temperature fields in an ensemble with a substantial saving in storage and time. The statistical model exploits the gridded geometry of the data and parallelization across processors. It is therefore computationally convenient and allows to fit a non-trivial model to a data set of one billion data points with a covariance matrix comprising of 10^18 entries.

  7. Compressing an Ensemble with Statistical Models: An Algorithm for Global 3D Spatio-Temporal Temperature

    KAUST Repository

    Castruccio, Stefano

    2015-04-02

    One of the main challenges when working with modern climate model ensembles is the increasingly larger size of the data produced, and the consequent difficulty in storing large amounts of spatio-temporally resolved information. Many compression algorithms can be used to mitigate this problem, but since they are designed to compress generic scientific data sets, they do not account for the nature of climate model output and they compress only individual simulations. In this work, we propose a different, statistics-based approach that explicitly accounts for the space-time dependence of the data for annual global three-dimensional temperature fields in an initial condition ensemble. The set of estimated parameters is small (compared to the data size) and can be regarded as a summary of the essential structure of the ensemble output; therefore, it can be used to instantaneously reproduce the temperature fields in an ensemble with a substantial saving in storage and time. The statistical model exploits the gridded geometry of the data and parallelization across processors. It is therefore computationally convenient and allows to fit a non-trivial model to a data set of one billion data points with a covariance matrix comprising of 10^18 entries.

  8. A MODIFIED CUMULUS PARAMETERIZATION SCHEME AND ITS APPLICATION IN THE SIMULATIONS OF THE HEAVY PRECIPITATION CASES

    Institute of Scientific and Technical Information of China (English)

    PING Fan; TANG Xi-ba; YIN Lei

    2016-01-01

    According to the characteristics of organized cumulus convective precipitation in China,a cumulus parameterization scheme suitable for describing the organized convective precipitation in East Asia is presented and modified.The Kain-Fristch scheme is chosen as the scheme to be modified based on analyses and comparisons of simulated precipitation in East Asia by several commonly-used mesoscale parameterization schemes.A key dynamic parameter to dynamically control the cumulus parameterization is then proposed to improve the Kain-Fristch scheme.Numerical simulations of a typhoon case and a Mei-yu front rainfall case are carried out with the improved scheme,and the results show that the improved version performs better than the original in simulating the track and intensity of the typhoons,as well as the distribution of Mei-yu front precipitation.

  9. Spatial clustering of summer temperature maxima from the CNRM-CM5 climate model ensembles & E-OBS over Europe

    Directory of Open Access Journals (Sweden)

    Margot Bador

    2015-09-01

    Full Text Available Reducing the dimensionality of the complex spatio-temporal variables associated with climate modeling, especially ensembles of climate models, is a challenging and important objective. For studies of detection and attribution, it is especially important to maintain information related to the extreme values of the atmospheric processes. Typical methods for data reduction involve summarizing climate model output information through means and variances, which does not preserve any information about the extremes. In order to help solve this challenge, a dependence summary measure appropriate for extreme values must be inferred. Here, we adapt one such measure from a recent study to a larger domain with a different variable and gridded data from observations and climate model ensembles, i.e. E-OBS observations and the CNRM-CM5 model. The handling of such ensembles of data is proposed, as well as a comparison of the spatial clusterings between two different ensembles, here a present-day and a future ensemble of climate simulations. This method yields valid information concerning extremes, while greatly reducing the data set.

  10. DART: New Research Using Ensemble Data Assimilation in Geophysical Models

    Science.gov (United States)

    Hoar, T. J.; Raeder, K.

    2015-12-01

    The Data Assimilation Research Testbed (DART) is a community facilityfor ensemble data assimilation developed and supported by the NationalCenter for Atmospheric Research. DART provides a comprehensive suite of software, documentation, and tutorials that can be used for ensemble data assimilation research, operations, and education. Scientists and software engineers at NCAR are available to support DART users who want to use existing DART products or develop their own applications. Current DART users range from university professors teaching data assimilation, to individual graduate students working with simple models, through national laboratories doing operational prediction with large state-of-the-art models. DART runs efficiently on many computational platforms ranging from laptops through thousands of cores on the newest supercomputers.This poster focuses on several recent research activities using DART with geophysical models.Using CAM/DART to understand whether OCO-2 Total Precipitable Water observations can be useful in numerical weather prediction.Impacts of the synergistic use of Infra-red CO retrievals (MOPITT, IASI) in CAM-CHEM/DART assimilations.Assimilation and Analysis of Observations of Amazonian Biomass Burning Emissions by MOPITT (aerosol optical depth), MODIS (carbon monoxide) and MISR (plume height).Long term evaluation of the chemical response of MOPITT-CO assimilation in CAM-CHEM/DART OSSEs for satellite planning and emission inversion capabilities.Improved forward observation operators for land models that have multiple land use/land cover segments in a single grid cell,Simulating mesoscale convective systems (MCSs) using a variable resolution, unstructured grid in the Model for Prediction Across Scales (MPAS) and DART.The mesoscale WRF+DART system generated an ensemble of year-long, real-time initializations of a convection allowing model over the United States.Constraining WACCM with observations in the tropical band (30S-30N) using DART

  11. Experimental real-time multi-model ensemble (MME) prediction of ...

    Indian Academy of Sciences (India)

    calibration (training) has to be of good quality. Otherwise, it might degrade the MME results. Early works by ... ECMWF ensemble data (Evans et al 2000), and they showed the superiority of the multi-model system over the ..... eral idea of the quality of rainfall forecasts in terms of error statistics for monsoon for the member.

  12. Aberrant expression of long noncoding RNAs in cumulus cells isolated from PCOS patients.

    Science.gov (United States)

    Huang, Xin; Hao, Cuifang; Bao, Hongchu; Wang, Meimei; Dai, Huangguan

    2016-01-01

    To describe the long noncoding RNA (lncRNA) profiles in cumulus cells isolated from polycystic ovary syndrome (PCOS) patients by employing a microarray and in-depth bioinformatics analysis. This information will help us understand the occurrence and development of PCOS. In this study, we used a microarray to describe lncRNA profiles in cumulus cells isolated from ten patients (five PCOS and five normal women). Several differentially expressed lncRNAs were chosen to validate the microarray results by quantitative RT-PCR (qRT-PCR). Then, the differentially expressed lncRNAs were classified into three subgroups (HOX loci lncRNA, enhancer-like lncRNA, and lincRNA) to deduce their potential features. Furthermore, a lncRNA/mRNA co-expression network was constructed by using the Cytoscape software (V2.8.3, http://www.cytoscape.org/ ). We observed that 623 lncRNAs and 260 messenger RNAs (mRNAs) were significantly up- or down-regulated (≥2-fold change), and these differences could be used to discriminate cumulus cells of PCOS from those of normal patients. Five differentially expressed lncRNAs (XLOC_011402, ENST00000454271, ENST00000433673, ENST00000450294, and ENST00000432431) were selected to validate the microarray results using quantitative RT-PCR (qRT-PCR). The qRT-PCR results were consistent with the microarray data. Further analysis indicated that many differentially expressed lncRNAs were transcribed from chromosome 2 and may act as enhancers to regulate their neighboring protein-coding genes. Forty-three lncRNAs and 29 mRNAs were used to construct the coding-non-coding gene co-expression network. Most pairs positively correlated, and one mRNA correlated with one or more lncRNAs. Our study is the first to determine genome-wide lncRNA expression patterns in cumulus cells isolated from PCOS patients by microarray. The results show that clusters of lncRNAs were aberrantly expressed in cumulus cells of PCOS patients compared with those of normal women, which revealed

  13. Prediction of Coal Face Gas Concentration by Multi-Scale Selective Ensemble Hybrid Modeling

    Directory of Open Access Journals (Sweden)

    WU Xiang

    2014-06-01

    Full Text Available A selective ensemble hybrid modeling prediction method based on wavelet transformation is proposed to improve the fitting and generalization capability of the existing prediction models of the coal face gas concentration, which has a strong stochastic volatility. Mallat algorithm was employed for the multi-scale decomposition and single-scale reconstruction of the gas concentration time series. Then, it predicted every subsequence by sparsely weighted multi unstable ELM(extreme learning machine predictor within method SERELM(sparse ensemble regressors of ELM. At last, it superimposed the predicted values of these models to obtain the predicted values of the original sequence. The proposed method takes advantage of characteristics of multi scale analysis of wavelet transformation, accuracy and fast characteristics of ELM prediction and the generalization ability of L1 regularized selective ensemble learning method. The results show that the forecast accuracy has large increase by using the proposed method. The average relative error is 0.65%, the maximum relative error is 4.16% and the probability of relative error less than 1% reaches 0.785.

  14. Evaluation of medium-range ensemble flood forecasting based on calibration strategies and ensemble methods in Lanjiang Basin, Southeast China

    Science.gov (United States)

    Liu, Li; Gao, Chao; Xuan, Weidong; Xu, Yue-Ping

    2017-11-01

    Ensemble flood forecasts by hydrological models using numerical weather prediction products as forcing data are becoming more commonly used in operational flood forecasting applications. In this study, a hydrological ensemble flood forecasting system comprised of an automatically calibrated Variable Infiltration Capacity model and quantitative precipitation forecasts from TIGGE dataset is constructed for Lanjiang Basin, Southeast China. The impacts of calibration strategies and ensemble methods on the performance of the system are then evaluated. The hydrological model is optimized by the parallel programmed ε-NSGA II multi-objective algorithm. According to the solutions by ε-NSGA II, two differently parameterized models are determined to simulate daily flows and peak flows at each of the three hydrological stations. Then a simple yet effective modular approach is proposed to combine these daily and peak flows at the same station into one composite series. Five ensemble methods and various evaluation metrics are adopted. The results show that ε-NSGA II can provide an objective determination on parameter estimation, and the parallel program permits a more efficient simulation. It is also demonstrated that the forecasts from ECMWF have more favorable skill scores than other Ensemble Prediction Systems. The multimodel ensembles have advantages over all the single model ensembles and the multimodel methods weighted on members and skill scores outperform other methods. Furthermore, the overall performance at three stations can be satisfactory up to ten days, however the hydrological errors can degrade the skill score by approximately 2 days, and the influence persists until a lead time of 10 days with a weakening trend. With respect to peak flows selected by the Peaks Over Threshold approach, the ensemble means from single models or multimodels are generally underestimated, indicating that the ensemble mean can bring overall improvement in forecasting of flows. For

  15. Girsanov reweighting for path ensembles and Markov state models

    Science.gov (United States)

    Donati, L.; Hartmann, C.; Keller, B. G.

    2017-06-01

    The sensitivity of molecular dynamics on changes in the potential energy function plays an important role in understanding the dynamics and function of complex molecules. We present a method to obtain path ensemble averages of a perturbed dynamics from a set of paths generated by a reference dynamics. It is based on the concept of path probability measure and the Girsanov theorem, a result from stochastic analysis to estimate a change of measure of a path ensemble. Since Markov state models (MSMs) of the molecular dynamics can be formulated as a combined phase-space and path ensemble average, the method can be extended to reweight MSMs by combining it with a reweighting of the Boltzmann distribution. We demonstrate how to efficiently implement the Girsanov reweighting in a molecular dynamics simulation program by calculating parts of the reweighting factor "on the fly" during the simulation, and we benchmark the method on test systems ranging from a two-dimensional diffusion process and an artificial many-body system to alanine dipeptide and valine dipeptide in implicit and explicit water. The method can be used to study the sensitivity of molecular dynamics on external perturbations as well as to reweight trajectories generated by enhanced sampling schemes to the original dynamics.

  16. A global water resources ensemble of hydrological models: the eartH2Observe Tier-1 dataset

    Science.gov (United States)

    Schellekens, Jaap; Dutra, Emanuel; Martínez-de la Torre, Alberto; Balsamo, Gianpaolo; van Dijk, Albert; Sperna Weiland, Frederiek; Minvielle, Marie; Calvet, Jean-Christophe; Decharme, Bertrand; Eisner, Stephanie; Fink, Gabriel; Flörke, Martina; Peßenteiner, Stefanie; van Beek, Rens; Polcher, Jan; Beck, Hylke; Orth, René; Calton, Ben; Burke, Sophia; Dorigo, Wouter; Weedon, Graham P.

    2017-07-01

    The dataset presented here consists of an ensemble of 10 global hydrological and land surface models for the period 1979-2012 using a reanalysis-based meteorological forcing dataset (0.5° resolution). The current dataset serves as a state of the art in current global hydrological modelling and as a benchmark for further improvements in the coming years. A signal-to-noise ratio analysis revealed low inter-model agreement over (i) snow-dominated regions and (ii) tropical rainforest and monsoon areas. The large uncertainty of precipitation in the tropics is not reflected in the ensemble runoff. Verification of the results against benchmark datasets for evapotranspiration, snow cover, snow water equivalent, soil moisture anomaly and total water storage anomaly using the tools from The International Land Model Benchmarking Project (ILAMB) showed overall useful model performance, while the ensemble mean generally outperformed the single model estimates. The results also show that there is currently no single best model for all variables and that model performance is spatially variable. In our unconstrained model runs the ensemble mean of total runoff into the ocean was 46 268 km3 yr-1 (334 kg m-2 yr-1), while the ensemble mean of total evaporation was 537 kg m-2 yr-1. All data are made available openly through a Water Cycle Integrator portal (WCI, wci.earth2observe.eu), and via a direct http and ftp download. The portal follows the protocols of the open geospatial consortium such as OPeNDAP, WCS and WMS. The DOI for the data is https://doi.org/10.1016/10.5281/zenodo.167070.

  17. A global water resources ensemble of hydrological models: the eartH2Observe Tier-1 dataset

    Directory of Open Access Journals (Sweden)

    J. Schellekens

    2017-07-01

    Full Text Available The dataset presented here consists of an ensemble of 10 global hydrological and land surface models for the period 1979–2012 using a reanalysis-based meteorological forcing dataset (0.5° resolution. The current dataset serves as a state of the art in current global hydrological modelling and as a benchmark for further improvements in the coming years. A signal-to-noise ratio analysis revealed low inter-model agreement over (i snow-dominated regions and (ii tropical rainforest and monsoon areas. The large uncertainty of precipitation in the tropics is not reflected in the ensemble runoff. Verification of the results against benchmark datasets for evapotranspiration, snow cover, snow water equivalent, soil moisture anomaly and total water storage anomaly using the tools from The International Land Model Benchmarking Project (ILAMB showed overall useful model performance, while the ensemble mean generally outperformed the single model estimates. The results also show that there is currently no single best model for all variables and that model performance is spatially variable. In our unconstrained model runs the ensemble mean of total runoff into the ocean was 46 268 km3 yr−1 (334 kg m−2 yr−1, while the ensemble mean of total evaporation was 537 kg m−2 yr−1. All data are made available openly through a Water Cycle Integrator portal (WCI, wci.earth2observe.eu, and via a direct http and ftp download. The portal follows the protocols of the open geospatial consortium such as OPeNDAP, WCS and WMS. The DOI for the data is https://doi.org/10.1016/10.5281/zenodo.167070.

  18. Demonstrating the value of larger ensembles in forecasting physical systems

    Directory of Open Access Journals (Sweden)

    Reason L. Machete

    2016-12-01

    Full Text Available Ensemble simulation propagates a collection of initial states forward in time in a Monte Carlo fashion. Depending on the fidelity of the model and the properties of the initial ensemble, the goal of ensemble simulation can range from merely quantifying variations in the sensitivity of the model all the way to providing actionable probability forecasts of the future. Whatever the goal is, success depends on the properties of the ensemble, and there is a longstanding discussion in meteorology as to the size of initial condition ensemble most appropriate for Numerical Weather Prediction. In terms of resource allocation: how is one to divide finite computing resources between model complexity, ensemble size, data assimilation and other components of the forecast system. One wishes to avoid undersampling information available from the model's dynamics, yet one also wishes to use the highest fidelity model available. Arguably, a higher fidelity model can better exploit a larger ensemble; nevertheless it is often suggested that a relatively small ensemble, say ~16 members, is sufficient and that larger ensembles are not an effective investment of resources. This claim is shown to be dubious when the goal is probabilistic forecasting, even in settings where the forecast model is informative but imperfect. Probability forecasts for a ‘simple’ physical system are evaluated at different lead times; ensembles of up to 256 members are considered. The pure density estimation context (where ensemble members are drawn from the same underlying distribution as the target differs from the forecasting context, where one is given a high fidelity (but imperfect model. In the forecasting context, the information provided by additional members depends also on the fidelity of the model, the ensemble formation scheme (data assimilation, the ensemble interpretation and the nature of the observational noise. The effect of increasing the ensemble size is quantified by

  19. NASA's EOSDIS Cumulus: Ingesting, Archiving, Managing, and Distributing from Commercial Cloud

    Science.gov (United States)

    Baynes, K.; Ramachandran, R.; Pilone, D.; Quinn, P.; Schuler, I.; Gilman, J.; Jazayeri, A.

    2017-12-01

    NASA's Earth Observing System Data and Information System (EOSDIS) has been working towards a vision of a cloud-based, highly-flexible, ingest, archive, management, and distribution system for its ever-growing and evolving data holdings. This system, Cumulus, is emerging from its prototyping stages and is poised to make a huge impact on how NASA manages and disseminates its Earth science data. This talk will outline the motivation for this work, present the achievements and hurdles of the past 18 months and will chart a course for the future expansion of the Cumulus expansion. We will explore on not just the technical, but also the socio-technical challenges that we face in evolving a system of this magnitude into the cloud and how we are rising to meet those challenges through open collaboration and intentional stakeholder engagement.

  20. Conservative strategy-based ensemble surrogate model for optimal groundwater remediation design at DNAPLs-contaminated sites

    Science.gov (United States)

    Ouyang, Qi; Lu, Wenxi; Lin, Jin; Deng, Wenbing; Cheng, Weiguo

    2017-08-01

    The surrogate-based simulation-optimization techniques are frequently used for optimal groundwater remediation design. When this technique is used, surrogate errors caused by surrogate-modeling uncertainty may lead to generation of infeasible designs. In this paper, a conservative strategy that pushes the optimal design into the feasible region was used to address surrogate-modeling uncertainty. In addition, chance-constrained programming (CCP) was adopted to compare with the conservative strategy in addressing this uncertainty. Three methods, multi-gene genetic programming (MGGP), Kriging (KRG) and support vector regression (SVR), were used to construct surrogate models for a time-consuming multi-phase flow model. To improve the performance of the surrogate model, ensemble surrogates were constructed based on combinations of different stand-alone surrogate models. The results show that: (1) the surrogate-modeling uncertainty was successfully addressed by the conservative strategy, which means that this method is promising for addressing surrogate-modeling uncertainty. (2) The ensemble surrogate model that combines MGGP with KRG showed the most favorable performance, which indicates that this ensemble surrogate can utilize both stand-alone surrogate models to improve the performance of the surrogate model.

  1. The Impact of Aerosols on Cloud and Precipitation Processes: Cloud-Resolving Model Simulations

    Science.gov (United States)

    Tao, Wei-Kuo; Li, Xiaowen; Khain, Alexander; Matsui, Toshihisa; Lang, Stephen; Simpson, Joanne

    2012-01-01

    Recently, a detailed spectral-bin microphysical scheme was implemented into the Goddard Cumulus Ensemble (GCE) model. Atmospheric aerosols are also described using number density size-distribution functions. A spectral-bin microphysical model is very expensive from a computational point of view and has only been implemented into the 2D version of the GCE at the present time. The model is tested by studying the evolution of deep tropical clouds in the west Pacific warm pool region and summertime convection over a mid-latitude continent with different concentrations of CCN: a low clean concentration and a high dirty concentration. The impact of atmospheric aerosol concentration on cloud and precipitation will be investigated.

  2. [Computer aided diagnosis model for lung tumor based on ensemble convolutional neural network].

    Science.gov (United States)

    Wang, Yuanyuan; Zhou, Tao; Lu, Huiling; Wu, Cuiying; Yang, Pengfei

    2017-08-01

    The convolutional neural network (CNN) could be used on computer-aided diagnosis of lung tumor with positron emission tomography (PET)/computed tomography (CT), which can provide accurate quantitative analysis to compensate for visual inertia and defects in gray-scale sensitivity, and help doctors diagnose accurately. Firstly, parameter migration method is used to build three CNNs (CT-CNN, PET-CNN, and PET/CT-CNN) for lung tumor recognition in CT, PET, and PET/CT image, respectively. Then, we aimed at CT-CNN to obtain the appropriate model parameters for CNN training through analysis the influence of model parameters such as epochs, batchsize and image scale on recognition rate and training time. Finally, three single CNNs are used to construct ensemble CNN, and then lung tumor PET/CT recognition was completed through relative majority vote method and the performance between ensemble CNN and single CNN was compared. The experiment results show that the ensemble CNN is better than single CNN on computer-aided diagnosis of lung tumor.

  3. Ensemble flood simulation for a small dam catchment in Japan using 10 and 2 km resolution nonhydrostatic model rainfalls

    Science.gov (United States)

    Kobayashi, Kenichiro; Otsuka, Shigenori; Apip; Saito, Kazuo

    2016-08-01

    This paper presents a study on short-term ensemble flood forecasting specifically for small dam catchments in Japan. Numerical ensemble simulations of rainfall from the Japan Meteorological Agency nonhydrostatic model (JMA-NHM) are used as the input data to a rainfall-runoff model for predicting river discharge into a dam. The ensemble weather simulations use a conventional 10 km and a high-resolution 2 km spatial resolutions. A distributed rainfall-runoff model is constructed for the Kasahori dam catchment (approx. 70 km2) and applied with the ensemble rainfalls. The results show that the hourly maximum and cumulative catchment-average rainfalls of the 2 km resolution JMA-NHM ensemble simulation are more appropriate than the 10 km resolution rainfalls. All the simulated inflows based on the 2 and 10 km rainfalls become larger than the flood discharge of 140 m3 s-1, a threshold value for flood control. The inflows with the 10 km resolution ensemble rainfall are all considerably smaller than the observations, while at least one simulated discharge out of 11 ensemble members with the 2 km resolution rainfalls reproduces the first peak of the inflow at the Kasahori dam with similar amplitude to observations, although there are spatiotemporal lags between simulation and observation. To take positional lags into account of the ensemble discharge simulation, the rainfall distribution in each ensemble member is shifted so that the catchment-averaged cumulative rainfall of the Kasahori dam maximizes. The runoff simulation with the position-shifted rainfalls shows much better results than the original ensemble discharge simulations.

  4. Ensemble Genetic Fuzzy Neuro Model Applied for the Emergency Medical Service via Unbalanced Data Evaluation

    Directory of Open Access Journals (Sweden)

    Muammar Sadrawi

    2018-03-01

    Full Text Available Equally partitioned data are essential for prediction. However, in some important cases, the data distribution is severely unbalanced. In this study, several algorithms are utilized to maximize the learning accuracy when dealing with a highly unbalanced dataset. A linguistic algorithm is applied to evaluate the input and output relationship, namely Fuzzy c-Means (FCM, which is applied as a clustering algorithm for the majority class to balance the minority class data from about 3 million cases. Each cluster is used to train several artificial neural network (ANN models. Different techniques are applied to generate an ensemble genetic fuzzy neuro model (EGFNM in order to select the models. The first ensemble technique, the intra-cluster EGFNM, works by evaluating the best combination from all the models generated by each cluster. Another ensemble technique is the inter-cluster model EGFNM, which is based on selecting the best model from each cluster. The accuracy of these techniques is evaluated using the receiver operating characteristic (ROC via its area under the curve (AUC. Results show that the AUC of the unbalanced data is 0.67974. The random cluster and best ANN single model have AUCs of 0.7177 and 0.72806, respectively. For the ensemble evaluations, the intra-cluster and the inter-cluster EGFNMs produce 0.7293 and 0.73038, respectively. In conclusion, this study achieved improved results by performing the EGFNM method compared with the unbalanced training. This study concludes that selecting several best models will produce a better result compared with all models combined.

  5. Improving Climate Projections Using "Intelligent" Ensembles

    Science.gov (United States)

    Baker, Noel C.; Taylor, Patrick C.

    2015-01-01

    Recent changes in the climate system have led to growing concern, especially in communities which are highly vulnerable to resource shortages and weather extremes. There is an urgent need for better climate information to develop solutions and strategies for adapting to a changing climate. Climate models provide excellent tools for studying the current state of climate and making future projections. However, these models are subject to biases created by structural uncertainties. Performance metrics-or the systematic determination of model biases-succinctly quantify aspects of climate model behavior. Efforts to standardize climate model experiments and collect simulation data-such as the Coupled Model Intercomparison Project (CMIP)-provide the means to directly compare and assess model performance. Performance metrics have been used to show that some models reproduce present-day climate better than others. Simulation data from multiple models are often used to add value to projections by creating a consensus projection from the model ensemble, in which each model is given an equal weight. It has been shown that the ensemble mean generally outperforms any single model. It is possible to use unequal weights to produce ensemble means, in which models are weighted based on performance (called "intelligent" ensembles). Can performance metrics be used to improve climate projections? Previous work introduced a framework for comparing the utility of model performance metrics, showing that the best metrics are related to the variance of top-of-atmosphere outgoing longwave radiation. These metrics improve present-day climate simulations of Earth's energy budget using the "intelligent" ensemble method. The current project identifies several approaches for testing whether performance metrics can be applied to future simulations to create "intelligent" ensemble-mean climate projections. It is shown that certain performance metrics test key climate processes in the models, and

  6. Project Overview: Cumulus Humilis Aerosol Processing Study (CHAPS): Proposed Summer 2007 ASP Field Campaign

    Energy Technology Data Exchange (ETDEWEB)

    Berkowitz, Carl M.; Berg, Larry K.; Ogren, J. A.; Hostetler, Chris A.; Ferrare, Richard

    2006-05-18

    This white paper presents the scientific motivation and preliminary logistical plans for a proposed ASP field campaign to be carried out in the summer of 2007. The primary objective of this campaign is to use the DOE Gulfstream-1 aircraft to make measurements characterizing the chemical, physical and optical properties of aerosols below, within and above large fields of fair weather cumulus and to use the NASA Langley Research Center’s High Spectral Resolution Lidar (HSRL) to make independent measurements of aerosol backscatter and extinction profiles in the vicinity of these fields. Separate from the science questions to be addressed by these observations will be information to add in the development of a parameterized cumulus scheme capable of including multiple cloud fields within a regional or global scale model. We will also be able to compare and contrast the cloud and aerosol properties within and outside the Oklahoma City plume to study aerosol processes within individual clouds. Preliminary discussions with the Cloud and Land Surface Interaction Campaign (CLASIC) science team have identified overlap between the science questions posed for the CLASIC Intensive Operation Period (IOP) and the proposed ASP campaign, suggesting collaboration would benefit both teams.

  7. Differential expression and localization of glycosidic residues in in vitro- and in vivo-matured cumulus-oocyte complexes in equine and porcine species.

    Science.gov (United States)

    Accogli, Gianluca; Douet, Cécile; Ambruosi, Barbara; Martino, Nicola Antonio; Uranio, Manuel Filioli; Deleuze, Stefan; Dell'Aquila, Maria Elena; Desantis, Salvatore; Goudet, Ghylène

    2014-12-01

    Glycoprotein oligosaccharides play major roles during reproduction, yet their function in gamete interactions is not fully elucidated. Identification and comparison of the glycan pattern in cumulus-oocyte complexes (COCs) from species with different efficiencies of in vitro spermatozoa penetration through the zona pellucida (ZP) could help clarify how oligosaccharides affect gamete interactions. We compared the expression and localization of 12 glycosidic residues in equine and porcine in vitro-matured (IVM) and preovulatory COCs by means of lectin histochemistry. The COCs glycan pattern differed between animals and COC source (IVM versus preovulatory). Among the 12 carbohydrate residues investigated, the IVM COCs from these two species shared: (a) sialo- and βN-acetylgalactosamine (GalNAc)-terminating glycans in the ZP; (b) sialylated and fucosylated glycans in cumulus cells; and (c) GalNAc and N-acetylglucosamine (GlcNAc) glycans in the ooplasm. Differences in the preovulatory COCs of the two species included: (a) sialoglycans and GlcNAc terminating glycans in the equine ZP versus terminal GalNAc and internal GlcNAc in the porcine ZP; (b) terminal galactosides in equine cumulus cells versus terminal GlcNAc and fucose in porcine cohorts; and (c) fucose in the mare ooplasm versus lactosamine and internal GlcNAc in porcine oocyte cytoplasm. Furthermore, equine and porcine cumulus cells and oocytes contributed differently to the synthesis of ZP glycoproteins. These results could be attributed to the different in vitro fertilization efficiencies between these two divergent, large-animal models. © 2014 Wiley Periodicals, Inc.

  8. Comparing pharmacophore models derived from crystallography and NMR ensembles

    Science.gov (United States)

    Ghanakota, Phani; Carlson, Heather A.

    2017-11-01

    NMR and X-ray crystallography are the two most widely used methods for determining protein structures. Our previous study examining NMR versus X-Ray sources of protein conformations showed improved performance with NMR structures when used in our Multiple Protein Structures (MPS) method for receptor-based pharmacophores (Damm, Carlson, J Am Chem Soc 129:8225-8235, 2007). However, that work was based on a single test case, HIV-1 protease, because of the rich data available for that system. New data for more systems are available now, which calls for further examination of the effect of different sources of protein conformations. The MPS technique was applied to Growth factor receptor bound protein 2 (Grb2), Src SH2 homology domain (Src-SH2), FK506-binding protein 1A (FKBP12), and Peroxisome proliferator-activated receptor-γ (PPAR-γ). Pharmacophore models from both crystal and NMR ensembles were able to discriminate between high-affinity, low-affinity, and decoy molecules. As we found in our original study, NMR models showed optimal performance when all elements were used. The crystal models had more pharmacophore elements compared to their NMR counterparts. The crystal-based models exhibited optimum performance only when pharmacophore elements were dropped. This supports our assertion that the higher flexibility in NMR ensembles helps focus the models on the most essential interactions with the protein. Our studies suggest that the "extra" pharmacophore elements seen at the periphery in X-ray models arise as a result of decreased protein flexibility and make very little contribution to model performance.

  9. An application of ensemble/multi model approach for wind power production forecasting

    Science.gov (United States)

    Alessandrini, S.; Pinson, P.; Hagedorn, R.; Decimi, G.; Sperati, S.

    2011-02-01

    The wind power forecasts of the 3 days ahead period are becoming always more useful and important in reducing the problem of grid integration and energy price trading due to the increasing wind power penetration. Therefore it's clear that the accuracy of this forecast is one of the most important requirements for a successful application. The wind power forecast applied in this study is based on meteorological models that provide the 3 days ahead wind data. A Model Output Statistic correction is then performed to reduce systematic error caused, for instance, by a wrong representation of surface roughness or topography in the meteorological models. For this purpose a training of a Neural Network (NN) to link directly the forecasted meteorological data and the power data has been performed. One wind farm has been examined located in a mountain area in the south of Italy (Sicily). First we compare the performances of a prediction based on meteorological data coming from a single model with those obtained by the combination of models (RAMS, ECMWF deterministic, LAMI). It is shown that the multi models approach reduces the day-ahead normalized RMSE forecast error (normalized by nominal power) of at least 1% compared to the singles models approach. Finally we have focused on the possibility of using the ensemble model system (EPS by ECMWF) to estimate the hourly, three days ahead, power forecast accuracy. Contingency diagram between RMSE of the deterministic power forecast and the ensemble members spread of wind forecast have been produced. From this first analysis it seems that ensemble spread could be used as an indicator of the forecast's accuracy at least for the first three days ahead period.

  10. The role of cloud-scale resolution on radiative properties of oceanic cumulus clouds

    International Nuclear Information System (INIS)

    Kassianov, Evgueni; Ackerman, Thomas; Kollias, Pavlos

    2005-01-01

    Both individual and combined effects of the horizontal and vertical variability of cumulus clouds on solar radiative transfer are investigated using a two-dimensional (x- and z-directions) cloud radar dataset. This high-resolution dataset of typical fair-weather marine cumulus is derived from ground-based 94GHz cloud radar observations. The domain-averaged (along x-direction) radiative properties are computed by a Monte Carlo method. It is shown that (i) different cloud-scale resolutions can be used for accurate calculations of the mean absorption, upward and downward fluxes; (ii) the resolution effects can depend strongly on the solar zenith angle; and (iii) a few cloud statistics can be successfully applied for calculating the averaged radiative properties

  11. Cumulus cells steroidogenesis is influenced by the degree of oocyte maturation

    Directory of Open Access Journals (Sweden)

    Barboni Barbara

    2003-05-01

    Full Text Available Abstract Background The possibility to predict the ability of a germ cell to properly sustain embryo development in vitro or in vivo as early as possible is undoubtedly the main problem of reproductive technologies. To date, only the achievement of nuclear maturation and cumulus expansion is feasible, as all the studies on cytoplasmic maturation are too invasive and have been complicated by the death of the cells analyzed. The authors studied the possibility to test the cytoplasmic quality of pig oocytes by evaluating their ability to produce steroidogenesis enabling factor(s. To this aim, oocytes matured under different culture conditions that allowed to obtain gradable level of cytoplasmic maturation, were used to produce conditioned media (OCM. The secretion of the factor(s in conditioned media was then recorded by evaluating the ability of the spent media to direct granulosa cells (GC steroidogenesis. Methods In order to obtain germ cells characterized by a different degree of developmental competence, selected pig oocytes from prepubertal gilts ovaries were cultured under different IVM protocols; part of the matured oocytes were used to produce OCM, while those remaining were submitted to in vitro fertilization trials to confirm their ability to sustain male pronuclear decondensation. The OCM collected were finally used on cumulus cells grown as monolayers for 5 days. The demonstration that oocytes secreted factor(s can influence GC steroidogenesis in the pig was confirmed in our lab by studying E2 and P4 production by cumulus cells monolayers using a radioimmunoassay technique. Results Monolayers obtained by growing GC surrounding the oocytes for five days represent a tool, which is practical, stable and available in most laboratories; by using this bioassay, we detected the antiluteal effect of immature oocytes, and for the first time, demonstrated that properly matured germ cells are able to direct cumulus cells steroidogenesis by

  12. A short-range multi-model ensemble weather prediction system for South Africa

    CSIR Research Space (South Africa)

    Landman, S

    2010-09-01

    Full Text Available prediction system (EPS) at the South African Weather Service (SAWS) are examined. The ensemble consists of different forecasts from the 12-km LAM of the UK Met Office Unified Model (UM) and the Conformal-Cubic Atmospheric Model (CCAM) covering the South...

  13. The Ensembl REST API: Ensembl Data for Any Language.

    Science.gov (United States)

    Yates, Andrew; Beal, Kathryn; Keenan, Stephen; McLaren, William; Pignatelli, Miguel; Ritchie, Graham R S; Ruffier, Magali; Taylor, Kieron; Vullo, Alessandro; Flicek, Paul

    2015-01-01

    We present a Web service to access Ensembl data using Representational State Transfer (REST). The Ensembl REST server enables the easy retrieval of a wide range of Ensembl data by most programming languages, using standard formats such as JSON and FASTA while minimizing client work. We also introduce bindings to the popular Ensembl Variant Effect Predictor tool permitting large-scale programmatic variant analysis independent of any specific programming language. The Ensembl REST API can be accessed at http://rest.ensembl.org and source code is freely available under an Apache 2.0 license from http://github.com/Ensembl/ensembl-rest. © The Author 2014. Published by Oxford University Press.

  14. Linking 1D coastal ocean modelling to environmental management: an ensemble approach

    Science.gov (United States)

    Mussap, Giulia; Zavatarelli, Marco; Pinardi, Nadia

    2017-12-01

    The use of a one-dimensional interdisciplinary numerical model of the coastal ocean as a tool contributing to the formulation of ecosystem-based management (EBM) is explored. The focus is on the definition of an experimental design based on ensemble simulations, integrating variability linked to scenarios (characterised by changes in the system forcing) and to the concurrent variation of selected, and poorly constrained, model parameters. The modelling system used was previously specifically designed for the use in "data-rich" areas, so that horizontal dynamics can be resolved by a diagnostic approach and external inputs can be parameterised by nudging schemes properly calibrated. Ensembles determined by changes in the simulated environmental (physical and biogeochemical) dynamics, under joint forcing and parameterisation variations, highlight the uncertainties associated to the application of specific scenarios that are relevant to EBM, providing an assessment of the reliability of the predicted changes. The work has been carried out by implementing the coupled modelling system BFM-POM1D in an area of Gulf of Trieste (northern Adriatic Sea), considered homogeneous from the point of view of hydrological properties, and forcing it by changing climatic (warming) and anthropogenic (reduction of the land-based nutrient input) pressure. Model parameters affected by considerable uncertainties (due to the lack of relevant observations) were varied jointly with the scenarios of change. The resulting large set of ensemble simulations provided a general estimation of the model uncertainties related to the joint variation of pressures and model parameters. The information of the model result variability aimed at conveying efficiently and comprehensibly the information on the uncertainties/reliability of the model results to non-technical EBM planners and stakeholders, in order to have the model-based information effectively contributing to EBM.

  15. Role of Fas-Mediated Apoptosis and Follicle-Stimulating Hormone on the Developmental Capacity of Bovine Cumulus Oocyte Complexes in Vitro

    NARCIS (Netherlands)

    Pomar, F.J.; Roelen, B.A.J.; Slot, K.A.; Tol, van H.T.A.; Colenbrander, B.; Teerds, K.J.

    2004-01-01

    Follicular atresia is believed to be largely regulated by apoptosis. To further understand how apoptosis can affect cumulus cells and oocytes we have evaluated the incidence and regulation of apoptosis affecting bovine cumulus oocyte complexes in vitro. Expression of components of the Fas signaling

  16. Ensemble prediction of air quality using the WRF/CMAQ model system for health effect studies in China

    Science.gov (United States)

    Hu, Jianlin; Li, Xun; Huang, Lin; Ying, Qi; Zhang, Qiang; Zhao, Bin; Wang, Shuxiao; Zhang, Hongliang

    2017-11-01

    Accurate exposure estimates are required for health effect analyses of severe air pollution in China. Chemical transport models (CTMs) are widely used to provide spatial distribution, chemical composition, particle size fractions, and source origins of air pollutants. The accuracy of air quality predictions in China is greatly affected by the uncertainties of emission inventories. The Community Multiscale Air Quality (CMAQ) model with meteorological inputs from the Weather Research and Forecasting (WRF) model were used in this study to simulate air pollutants in China in 2013. Four simulations were conducted with four different anthropogenic emission inventories, including the Multi-resolution Emission Inventory for China (MEIC), the Emission Inventory for China by School of Environment at Tsinghua University (SOE), the Emissions Database for Global Atmospheric Research (EDGAR), and the Regional Emission inventory in Asia version 2 (REAS2). Model performance of each simulation was evaluated against available observation data from 422 sites in 60 cities across China. Model predictions of O3 and PM2.5 generally meet the model performance criteria, but performance differences exist in different regions, for different pollutants, and among inventories. Ensemble predictions were calculated by linearly combining the results from different inventories to minimize the sum of the squared errors between the ensemble results and the observations in all cities. The ensemble concentrations show improved agreement with observations in most cities. The mean fractional bias (MFB) and mean fractional errors (MFEs) of the ensemble annual PM2.5 in the 60 cities are -0.11 and 0.24, respectively, which are better than the MFB (-0.25 to -0.16) and MFE (0.26-0.31) of individual simulations. The ensemble annual daily maximum 1 h O3 (O3-1h) concentrations are also improved, with mean normalized bias (MNB) of 0.03 and mean normalized errors (MNE) of 0.14, compared to MNB of 0.06-0.19 and

  17. New concept of statistical ensembles

    International Nuclear Information System (INIS)

    Gorenstein, M.I.

    2009-01-01

    An extension of the standard concept of the statistical ensembles is suggested. Namely, the statistical ensembles with extensive quantities fluctuating according to an externally given distribution is introduced. Applications in the statistical models of multiple hadron production in high energy physics are discussed.

  18. Estimating Convection Parameters in the GFDL CM2.1 Model Using Ensemble Data Assimilation

    Science.gov (United States)

    Li, Shan; Zhang, Shaoqing; Liu, Zhengyu; Lu, Lv; Zhu, Jiang; Zhang, Xuefeng; Wu, Xinrong; Zhao, Ming; Vecchi, Gabriel A.; Zhang, Rong-Hua; Lin, Xiaopei

    2018-04-01

    Parametric uncertainty in convection parameterization is one major source of model errors that cause model climate drift. Convection parameter tuning has been widely studied in atmospheric models to help mitigate the problem. However, in a fully coupled general circulation model (CGCM), convection parameters which impact the ocean as well as the climate simulation may have different optimal values. This study explores the possibility of estimating convection parameters with an ensemble coupled data assimilation method in a CGCM. Impacts of the convection parameter estimation on climate analysis and forecast are analyzed. In a twin experiment framework, five convection parameters in the GFDL coupled model CM2.1 are estimated individually and simultaneously under both perfect and imperfect model regimes. Results show that the ensemble data assimilation method can help reduce the bias in convection parameters. With estimated convection parameters, the analyses and forecasts for both the atmosphere and the ocean are generally improved. It is also found that information in low latitudes is relatively more important for estimating convection parameters. This study further suggests that when important parameters in appropriate physical parameterizations are identified, incorporating their estimation into traditional ensemble data assimilation procedure could improve the final analysis and climate prediction.

  19. Ensemble modelling of nitrogen fluxes: data fusion for a Swedish meso-scale catchment

    Directory of Open Access Journals (Sweden)

    J.-F. Exbrayat

    2010-12-01

    Full Text Available Model predictions of biogeochemical fluxes at the landscape scale are highly uncertain, both with respect to stochastic (parameter and structural uncertainty. In this study 5 different models (LASCAM, LASCAM-S, a self-developed tool, SWAT and HBV-N-D designed to simulate hydrological fluxes as well as mobilisation and transport of one or several nitrogen species were applied to the mesoscale River Fyris catchment in mid-eastern Sweden.

    Hydrological calibration against 5 years of recorded daily discharge at two stations gave highly variable results with Nash-Sutcliffe Efficiency (NSE ranging between 0.48 and 0.83. Using the calibrated hydrological parameter sets, the parameter uncertainty linked to the nitrogen parameters was explored in order to cover the range of possible predictions of exported loads for 3 nitrogen species: nitrate (NO3, ammonium (NH4 and total nitrogen (Tot-N. For each model and each nitrogen species, predictions were ranked in two different ways according to the performance indicated by two different goodness-of-fit measures: the coefficient of determination R2 and the root mean square error RMSE. A total of 2160 deterministic Single Model Ensembles (SME was generated using an increasing number of members (from the 2 best to the 10 best single predictions. Finally the best SME for each model, nitrogen species and discharge station were selected and merged into 330 different Multi-Model Ensembles (MME. The evolution of changes in R2 and RMSE was used as a performance descriptor of the ensemble procedure.

    In each studied case, numerous ensemble merging schemes were identified which outperformed any of their members. Improvement rates were generally higher when worse members were introduced. The highest improvements were achieved for the nitrogen SMEs compiled with multiple linear regression models with R2 selected members, which

  20. Muscle activation described with a differential equation model for large ensembles of locally coupled molecular motors.

    Science.gov (United States)

    Walcott, Sam

    2014-10-01

    Molecular motors, by turning chemical energy into mechanical work, are responsible for active cellular processes. Often groups of these motors work together to perform their biological role. Motors in an ensemble are coupled and exhibit complex emergent behavior. Although large motor ensembles can be modeled with partial differential equations (PDEs) by assuming that molecules function independently of their neighbors, this assumption is violated when motors are coupled locally. It is therefore unclear how to describe the ensemble behavior of the locally coupled motors responsible for biological processes such as calcium-dependent skeletal muscle activation. Here we develop a theory to describe locally coupled motor ensembles and apply the theory to skeletal muscle activation. The central idea is that a muscle filament can be divided into two phases: an active and an inactive phase. Dynamic changes in the relative size of these phases are described by a set of linear ordinary differential equations (ODEs). As the dynamics of the active phase are described by PDEs, muscle activation is governed by a set of coupled ODEs and PDEs, building on previous PDE models. With comparison to Monte Carlo simulations, we demonstrate that the theory captures the behavior of locally coupled ensembles. The theory also plausibly describes and predicts muscle experiments from molecular to whole muscle scales, suggesting that a micro- to macroscale muscle model is within reach.

  1. Diversity in random subspacing ensembles

    NARCIS (Netherlands)

    Tsymbal, A.; Pechenizkiy, M.; Cunningham, P.; Kambayashi, Y.; Mohania, M.K.; Wöß, W.

    2004-01-01

    Ensembles of learnt models constitute one of the main current directions in machine learning and data mining. It was shown experimentally and theoretically that in order for an ensemble to be effective, it should consist of classifiers having diversity in their predictions. A number of ways are

  2. Ensemble atmospheric dispersion calculations for decision support systems

    International Nuclear Information System (INIS)

    Borysiewicz, M.; Potempski, S.; Galkowski, A.; Zelazny, R.

    2003-01-01

    This document describes two approaches to long-range atmospheric dispersion of pollutants based on the ensemble concept. In the first part of the report some experiences related to the exercises undertaken under the ENSEMBLE project of the European Union are presented. The second part is devoted to the implementation of mesoscale numerical prediction models RAMS and atmospheric dispersion model HYPACT on Beowulf cluster and theirs usage for ensemble forecasting and long range atmospheric ensemble dispersion calculations based on available meteorological data from NCEO, NOAA (USA). (author)

  3. A user credit assessment model based on clustering ensemble for broadband network new media service supervision

    Science.gov (United States)

    Liu, Fang; Cao, San-xing; Lu, Rui

    2012-04-01

    This paper proposes a user credit assessment model based on clustering ensemble aiming to solve the problem that users illegally spread pirated and pornographic media contents within the user self-service oriented broadband network new media platforms. Its idea is to do the new media user credit assessment by establishing indices system based on user credit behaviors, and the illegal users could be found according to the credit assessment results, thus to curb the bad videos and audios transmitted on the network. The user credit assessment model based on clustering ensemble proposed by this paper which integrates the advantages that swarm intelligence clustering is suitable for user credit behavior analysis and K-means clustering could eliminate the scattered users existed in the result of swarm intelligence clustering, thus to realize all the users' credit classification automatically. The model's effective verification experiments are accomplished which are based on standard credit application dataset in UCI machine learning repository, and the statistical results of a comparative experiment with a single model of swarm intelligence clustering indicates this clustering ensemble model has a stronger creditworthiness distinguishing ability, especially in the aspect of predicting to find user clusters with the best credit and worst credit, which will facilitate the operators to take incentive measures or punitive measures accurately. Besides, compared with the experimental results of Logistic regression based model under the same conditions, this clustering ensemble model is robustness and has better prediction accuracy.

  4. Dynamics, thermodynamics, radiation, and cloudiness associated with cumulus-topped marine boundary layers

    Energy Technology Data Exchange (ETDEWEB)

    Ghate, Virendra P. [Argonne National Lab. (ANL), Argonne, IL (United States); Miller, Mark [Rutgers Univ., New Brunswick, NJ (United States)

    2016-11-01

    The overall goal of this project was to improve the understanding of marine boundary clouds by using data collected at the Atmospheric Radiation Measurement (ARM) sites, so that they can be better represented in global climate models (GCMs). Marine boundary clouds are observed regularly over the tropical and subtropical oceans. They are an important element of the Earth’s climate system because they have substantial impact on the radiation budget together with the boundary layer moisture, and energy transports. These clouds also have an impact on large-scale precipitation features like the Inter Tropical Convergence Zone (ITCZ). Because these clouds occur at temporal and spatial scales much smaller than those relevant to GCMs, their effects and the associated processes need to be parameterized in GCM simulations aimed at predicting future climate and energy needs. Specifically, this project’s objectives were to (1) characterize the surface turbulent fluxes, boundary layer thermodynamics, radiation field, and cloudiness associated with cumulus-topped marine boundary layers; (2) explore the similarities and differences in cloudiness and boundary layer conditions observed in the tropical and trade-wind regions; and (3) understand similarities and differences by using a simple bulk boundary layer model. In addition to working toward achieving the project’s three objectives, we also worked on understanding the role played by different forcing mechanisms in maintaining turbulence within cloud-topped boundary layers We focused our research on stratocumulus clouds during the first phase of the project, and cumulus clouds during the rest of the project. Below is a brief description of manuscripts published in peer-reviewed journals that describe results from our analyses.

  5. Quantifying Uncertainty in Flood Inundation Mapping Using Streamflow Ensembles and Multiple Hydraulic Modeling Techniques

    Science.gov (United States)

    Hosseiny, S. M. H.; Zarzar, C.; Gomez, M.; Siddique, R.; Smith, V.; Mejia, A.; Demir, I.

    2016-12-01

    The National Water Model (NWM) provides a platform for operationalize nationwide flood inundation forecasting and mapping. The ability to model flood inundation on a national scale will provide invaluable information to decision makers and local emergency officials. Often, forecast products use deterministic model output to provide a visual representation of a single inundation scenario, which is subject to uncertainty from various sources. While this provides a straightforward representation of the potential inundation, the inherent uncertainty associated with the model output should be considered to optimize this tool for decision making support. The goal of this study is to produce ensembles of future flood inundation conditions (i.e. extent, depth, and velocity) to spatially quantify and visually assess uncertainties associated with the predicted flood inundation maps. The setting for this study is located in a highly urbanized watershed along the Darby Creek in Pennsylvania. A forecasting framework coupling the NWM with multiple hydraulic models was developed to produce a suite ensembles of future flood inundation predictions. Time lagged ensembles from the NWM short range forecasts were used to account for uncertainty associated with the hydrologic forecasts. The forecasts from the NWM were input to iRIC and HEC-RAS two-dimensional software packages, from which water extent, depth, and flow velocity were output. Quantifying the agreement between output ensembles for each forecast grid provided the uncertainty metrics for predicted flood water inundation extent, depth, and flow velocity. For visualization, a series of flood maps that display flood extent, water depth, and flow velocity along with the underlying uncertainty associated with each of the forecasted variables were produced. The results from this study demonstrate the potential to incorporate and visualize model uncertainties in flood inundation maps in order to identify the high flood risk zones.

  6. DNA Double-Strand Breaks Induce the Nuclear Actin Filaments Formation in Cumulus-Enclosed Oocytes but Not in Denuded Oocytes.

    Directory of Open Access Journals (Sweden)

    Ming-Hong Sun

    Full Text Available As a gamete, oocyte needs to maintain its genomic integrity and passes this haploid genome to the next generation. However, fully-grown mouse oocyte cannot respond to DNA double-strand breaks (DSBs effectively and it is also unable to repair them before the meiosis resumption. To compensate for this disadvantage and control the DNA repair events, oocyte needs the cooperation with its surrounding cumulus cells. Recently, evidences have shown that nuclear actin filament formation plays roles in cellular DNA DSB repair. To explore whether these nuclear actin filaments are formed in the DNA-damaged oocytes, here, we labeled the filament actins in denuded oocytes (DOs and cumulus-enclosed oocytes (CEOs. We observed that the nuclear actin filaments were formed only in the DNA-damaged CEOs, but not in DOs. Formation of actin filaments in the nucleus was an event downstream to the DNA damage response. Our data also showed that the removal of cumulus cells led to a reduction in the nuclear actin filaments in oocytes. Knocking down of the Adcy1 gene in cumulus cells did not affect the formation of nuclear actin filaments in oocytes. Notably, we also observed that the nuclear actin filaments in CEOs could be induced by inhibition of gap junctions. From our results, it was confirmed that DNA DSBs induce the nuclear actin filament formation in oocyte and which is controlled by the cumulus cells.

  7. Canonical Ensemble Model for Black Hole Radiation Jingyi Zhang

    Indian Academy of Sciences (India)

    Canonical Ensemble Model for Black Hole Radiation. 575. For entropy, there is no corresponding thermodynamical quantity, without loss of generalization. Let us define an entropy operator. ˆS = −KB ln ˆρ. (11). Then, the mean value of entropy is. S ≡〈ˆS〉 = tr( ˆρ ˆS) = −KBtr( ˆρ ln ˆρ). (12). For ideal gases, let y = V , then the ...

  8. From deep TLS validation to ensembles of atomic models built from elemental motions

    International Nuclear Information System (INIS)

    Urzhumtsev, Alexandre; Afonine, Pavel V.; Van Benschoten, Andrew H.; Fraser, James S.; Adams, Paul D.

    2015-01-01

    Procedures are described for extracting the vibration and libration parameters corresponding to a given set of TLS matrices and their simultaneous validation. Knowledge of these parameters allows the generation of structural ensembles corresponding to these matrices. The translation–libration–screw model first introduced by Cruickshank, Schomaker and Trueblood describes the concerted motions of atomic groups. Using TLS models can improve the agreement between calculated and experimental diffraction data. Because the T, L and S matrices describe a combination of atomic vibrations and librations, TLS models can also potentially shed light on molecular mechanisms involving correlated motions. However, this use of TLS models in mechanistic studies is hampered by the difficulties in translating the results of refinement into molecular movement or a structural ensemble. To convert the matrices into a constituent molecular movement, the matrix elements must satisfy several conditions. Refining the T, L and S matrix elements as independent parameters without taking these conditions into account may result in matrices that do not represent concerted molecular movements. Here, a mathematical framework and the computational tools to analyze TLS matrices, resulting in either explicit decomposition into descriptions of the underlying motions or a report of broken conditions, are described. The description of valid underlying motions can then be output as a structural ensemble. All methods are implemented as part of the PHENIX project

  9. From deep TLS validation to ensembles of atomic models built from elemental motions

    Energy Technology Data Exchange (ETDEWEB)

    Urzhumtsev, Alexandre, E-mail: sacha@igbmc.fr [Centre for Integrative Biology, Institut de Génétique et de Biologie Moléculaire et Cellulaire, CNRS–INSERM–UdS, 1 Rue Laurent Fries, BP 10142, 67404 Illkirch (France); Université de Lorraine, BP 239, 54506 Vandoeuvre-les-Nancy (France); Afonine, Pavel V. [Lawrence Berkeley National Laboratory, Berkeley, California (United States); Van Benschoten, Andrew H.; Fraser, James S. [University of California, San Francisco, San Francisco, CA 94158 (United States); Adams, Paul D. [Lawrence Berkeley National Laboratory, Berkeley, California (United States); University of California Berkeley, Berkeley, CA 94720 (United States); Centre for Integrative Biology, Institut de Génétique et de Biologie Moléculaire et Cellulaire, CNRS–INSERM–UdS, 1 Rue Laurent Fries, BP 10142, 67404 Illkirch (France)

    2015-07-28

    Procedures are described for extracting the vibration and libration parameters corresponding to a given set of TLS matrices and their simultaneous validation. Knowledge of these parameters allows the generation of structural ensembles corresponding to these matrices. The translation–libration–screw model first introduced by Cruickshank, Schomaker and Trueblood describes the concerted motions of atomic groups. Using TLS models can improve the agreement between calculated and experimental diffraction data. Because the T, L and S matrices describe a combination of atomic vibrations and librations, TLS models can also potentially shed light on molecular mechanisms involving correlated motions. However, this use of TLS models in mechanistic studies is hampered by the difficulties in translating the results of refinement into molecular movement or a structural ensemble. To convert the matrices into a constituent molecular movement, the matrix elements must satisfy several conditions. Refining the T, L and S matrix elements as independent parameters without taking these conditions into account may result in matrices that do not represent concerted molecular movements. Here, a mathematical framework and the computational tools to analyze TLS matrices, resulting in either explicit decomposition into descriptions of the underlying motions or a report of broken conditions, are described. The description of valid underlying motions can then be output as a structural ensemble. All methods are implemented as part of the PHENIX project.

  10. An artificial neural network ensemble model for estimating global solar radiation from Meteosat satellite images

    International Nuclear Information System (INIS)

    Linares-Rodriguez, Alvaro; Ruiz-Arias, José Antonio; Pozo-Vazquez, David; Tovar-Pescador, Joaquin

    2013-01-01

    An optimized artificial neural network ensemble model is built to estimate daily global solar radiation over large areas. The model uses clear-sky estimates and satellite images as input variables. Unlike most studies using satellite imagery based on visible channels, our model also exploits all information within infrared channels of the Meteosat 9 satellite. A genetic algorithm is used to optimize selection of model inputs, for which twelve are selected – eleven 3-km Meteosat 9 channels and one clear-sky term. The model is validated in Andalusia (Spain) from January 2008 through December 2008. Measured data from 83 stations across the region are used, 65 for training and 18 independent ones for testing the model. At the latter stations, the ensemble model yields an overall root mean square error of 6.74% and correlation coefficient of 99%; the generated estimates are relatively accurate and errors spatially uniform. The model yields reliable results even on cloudy days, improving on current models based on satellite imagery. - Highlights: • Daily solar radiation data are generated using an artificial neural network ensemble. • Eleven Meteosat channels observations and a clear sky term are used as model inputs. • Model exploits all information within infrared Meteosat channels. • Measured data for a year from 83 ground stations are used. • The proposed approach has better performance than existing models on daily basis

  11. Proteolytic Activity of the 26S Proteasome is required for the Meiotic Resumption, Germinal Vesicle Breakdown and Cumulus Expansion of Porcine Cumulus-Oocyte Complexes Matured In Vitro

    Czech Academy of Sciences Publication Activity Database

    Yi, Y. J.; Nagyová, Eva; Manandhar, G.; Procházka, Radek; Šutovsky, M.; Park, C. S.; Šutovský, P.

    2008-01-01

    Roč. 78, - (2008), s. 115-126 ISSN 0006-3363 R&D Projects: GA ČR GA305/05/0960 Institutional research plan: CEZ:AV0Z50450515 Keywords : cumulus expansion * FSH * germinal vesicle breakdown Subject RIV: EB - Genetics ; Molecular Biology Impact factor: 3.469, year: 2008

  12. Ensemble prediction of air quality using the WRF/CMAQ model system for health effect studies in China

    Directory of Open Access Journals (Sweden)

    J. Hu

    2017-11-01

    Full Text Available Accurate exposure estimates are required for health effect analyses of severe air pollution in China. Chemical transport models (CTMs are widely used to provide spatial distribution, chemical composition, particle size fractions, and source origins of air pollutants. The accuracy of air quality predictions in China is greatly affected by the uncertainties of emission inventories. The Community Multiscale Air Quality (CMAQ model with meteorological inputs from the Weather Research and Forecasting (WRF model were used in this study to simulate air pollutants in China in 2013. Four simulations were conducted with four different anthropogenic emission inventories, including the Multi-resolution Emission Inventory for China (MEIC, the Emission Inventory for China by School of Environment at Tsinghua University (SOE, the Emissions Database for Global Atmospheric Research (EDGAR, and the Regional Emission inventory in Asia version 2 (REAS2. Model performance of each simulation was evaluated against available observation data from 422 sites in 60 cities across China. Model predictions of O3 and PM2.5 generally meet the model performance criteria, but performance differences exist in different regions, for different pollutants, and among inventories. Ensemble predictions were calculated by linearly combining the results from different inventories to minimize the sum of the squared errors between the ensemble results and the observations in all cities. The ensemble concentrations show improved agreement with observations in most cities. The mean fractional bias (MFB and mean fractional errors (MFEs of the ensemble annual PM2.5 in the 60 cities are −0.11 and 0.24, respectively, which are better than the MFB (−0.25 to −0.16 and MFE (0.26–0.31 of individual simulations. The ensemble annual daily maximum 1 h O3 (O3-1h concentrations are also improved, with mean normalized bias (MNB of 0.03 and mean normalized errors (MNE of 0.14, compared to MNB

  13. Application of an Ensemble Kalman filter to a 1-D coupled hydrodynamic-ecosystem model of the Ligurian Sea

    NARCIS (Netherlands)

    Lenartz, F.; Raick, C.; Soetaert, K.E.R.; Grégoire, M.

    2007-01-01

    The Ensemble Kalman filter (EnKF) has been applied to a 1-D complex ecosystem model coupled with a hydrodynamic model of the Ligurian Sea. In order to improve the performance of the EnKF, an ensemble subsampling strategy has been used to better represent the covariance matrices and a pre-analysis

  14. Expression pattern of G protein‑coupled estrogen receptor 1 (GPER) in human cumulus granulosa cells (CGCs) of patients with PCOS.

    Science.gov (United States)

    Zang, Lili; Zhang, Quan; Zhou, Yi; Zhao, Yan; Lu, Linlin; Jiang, Zhou; Peng, Zhen; Zou, Shuhua

    2016-06-01

    Estradiol mediates its actions by binding to classical nuclear receptors, estrogen receptor α (ER-α) and estrogen receptor β (ER-β), and the non-classical G protein-coupled estrogen receptor 1(GPER). Several gene knockdown models have shown the importance of the receptors for growth of the oocyte and for ovulation. The aim of our study was to identify the pattern of GPER expression in human cumulus granulosa cells (CGCs) from ovarian follicles at different stages of oocyte maturation, and the differences of GPER expression between polycystic ovary syndrome (PCOS) patients and non-PCOS women. Thirty-eight cases of PCOS patients and a control group of thirty-two infertile women without PCOS were used in this study. GPER's location in CGCs was investigated by immunohistochemistry. Quantitative RT-PCR and western blot were used to identify the quantify GPER expression. Here we demonstrated that GPER was expressed in CGCs of both PCOS patients and non-PCOS women, and the expression of GPER was decreased significantly during oocyte maturation. But the expression levels of GPER in CGCs of PCOS patients and non-PCOS women were not significantly different. The data indicate that GPER may play a role during human oocyte maturation through its action in cumulus granulosa cells. AMHRIIs: anti-Mullerian hormone type II receptors; BMI: body mass index; CGCs: cumulus granulosa cells; COH: controlled ovarian hyperstimulation; E2: estradiol; EGFR: epidermal growth factor receptor; ER-α: estrogen receptor; ER-β: estrogen receptor β; FF: follicular fluid; FSH: follicle-stimulating hormone; GCs: granulosa cells; GPER: G protein-coupled estrogen receptor 1; GV: germinal vesicle; GVBD: germinal vesicle breakdown; HCG: human chorionic gonadotropin; IRS: immunoreactive score; IVF-ET: in vitro fertilization and embryo transfer; MI: metaphase I; MII: metaphase II; MAPK: mitogen-activated protein kinase; OCCCs: oocyte corona cumulus complexes; PCOS: polycystic ovarian syndrome; q

  15. The possible FAT1-mediated apoptotic pathways in porcine cumulus cells

    NARCIS (Netherlands)

    Wu, Xinhui; Fu, Yao; Liu, Chang; Chai, Menglong; Chen, Chengzhen; Dai, Lisheng; Gao, Yan; Jiang, Hao; Zhang, Jiabao

    Porcine cumulus cells are localized around oocytes and act as a specific type of granulosa that plays essential roles in the development and maturation of oocytes, the development and atresia of follicles, and the development of embryos. Studies of FAT1 have demonstrated its functions in cell-cell

  16. An Ensemble Model for Co-Seismic Landslide Susceptibility Using GIS and Random Forest Method

    Directory of Open Access Journals (Sweden)

    Suchita Shrestha

    2017-11-01

    Full Text Available The Mw 7.8 Gorkha earthquake of 25 April 2015 triggered thousands of landslides in the central part of the Nepal Himalayas. The main goal of this study was to generate an ensemble-based map of co-seismic landslide susceptibility in Sindhupalchowk District using model comparison and combination strands. A total of 2194 co-seismic landslides were identified and were randomly split into 1536 (~70%, to train data for establishing the model, and the remaining 658 (~30% for the validation of the model. Frequency ratio, evidential belief function, and weight of evidence methods were applied and compared using 11 different causative factors (peak ground acceleration, epicenter proximity, fault proximity, geology, elevation, slope, plan curvature, internal relief, drainage proximity, stream power index, and topographic wetness index to prepare the landslide susceptibility map. An ensemble of random forest was then used to overcome the various prediction limitations of the individual models. The success rates and prediction capabilities were critically compared using the area under the curve (AUC of the receiver operating characteristic curve (ROC. By synthesizing the results of the various models into a single score, the ensemble model improved accuracy and provided considerably more realistic prediction capacities (91% than the frequency ratio (81.2%, evidential belief function (83.5% methods, and weight of evidence (80.1%.

  17. Transition Metal Chelator Induces Progesterone Production in Mouse Cumulus-Oocyte Complexes and Corpora Lutea.

    Science.gov (United States)

    Tian, X; Anthony, K; Diaz, Francisco J

    2017-04-01

    Progesterone production is upregulated in granulosa cells (cumulus and mural) after the LH surge, but the intra-follicular mechanisms regulating this transition are not completely known. Recent findings show that the transition metal chelator, N,N,N',N'-tetrakis-(2-pyridylmethyl)-ethylenediamine (TPEN), impairs ovarian function. In this study, we provide evidence that chelating transition metals, including zinc, enhances progesterone production. The findings show that TPEN (transition metal chelator) increases abundance of Cyp11a1 and Star messenger RNA (mRNA) between 8- and 20-fold and progesterone production more than 3-fold in cultured cumulus-oocyte complexes (COC). Feeding a zinc-deficient diet for 10 days, but not 3 days, increased Star, Hsd3b, and prostaglandin F2 alpha receptor (Ptgfr) mRNA ~2.5-fold, suggesting that the effect of TPEN is through modulation of zinc availability. Progesterone from cumulus cells promotes oocyte developmental potential. Blocking progesterone production with epostane during maturation reduced subsequent blastocyst formation from 89 % in control to 18 % in epostane-treated complexes, but supplementation with progesterone restored blastocyst developmental potential to 94 %. Feeding a zinc-deficient diet for 5 days before ovulation did not affect the number of CL, STAR protein, or serum progesterone. However, incubating luteal tissue with TPEN increased abundance of Star, Hsd3b, and Ptgfr mRNA 2-3-fold and increased progesterone production 3-fold. TPEN is known to abolish SMAD2/3 signaling in cumulus cells. However, treatment of COC with the SMAD2/3 phosphorylation inhibitor, SB421542, did not by itself induce steroidogenic transcripts but did potentiate EGF-induced Star mRNA expression. Collectively, the results show that depletion of transition metals with TPEN acutely enhances progesterone biosynthesis in COC and luteal tissue.

  18. Modelling Laser Milling of Microcavities for the Manufacturing of DES with Ensembles

    Directory of Open Access Journals (Sweden)

    Pedro Santos

    2014-01-01

    Full Text Available A set of designed experiments, involving the use of a pulsed Nd:YAG laser system milling 316L Stainless Steel, serve to study the laser-milling process of microcavities in the manufacture of drug-eluting stents (DES. Diameter, depth, and volume error are considered to be optimized as functions of the process parameters, which include laser intensity, pulse frequency, and scanning speed. Two different DES shapes are studied that combine semispheres and cylinders. Process inputs and outputs are defined by considering the process parameters that can be changed under industrial conditions and the industrial requirements of this manufacturing process. In total, 162 different conditions are tested in a process that is modeled with the following state-of-the-art data-mining regression techniques: Support Vector Regression, Ensembles, Artificial Neural Networks, Linear Regression, and Nearest Neighbor Regression. Ensemble regression emerged as the most suitable technique for studying this industrial problem. Specifically, Iterated Bagging ensembles with unpruned model trees outperformed the other methods in the tests. This method can predict the geometrical dimensions of the machined microcavities with relative errors related to the main average value in the range of 3 to 23%, which are considered very accurate predictions, in view of the characteristics of this innovative industrial task.

  19. Acute leukemia classification by ensemble particle swarm model selection.

    Science.gov (United States)

    Escalante, Hugo Jair; Montes-y-Gómez, Manuel; González, Jesús A; Gómez-Gil, Pilar; Altamirano, Leopoldo; Reyes, Carlos A; Reta, Carolina; Rosales, Alejandro

    2012-07-01

    Acute leukemia is a malignant disease that affects a large proportion of the world population. Different types and subtypes of acute leukemia require different treatments. In order to assign the correct treatment, a physician must identify the leukemia type or subtype. Advanced and precise methods are available for identifying leukemia types, but they are very expensive and not available in most hospitals in developing countries. Thus, alternative methods have been proposed. An option explored in this paper is based on the morphological properties of bone marrow images, where features are extracted from medical images and standard machine learning techniques are used to build leukemia type classifiers. This paper studies the use of ensemble particle swarm model selection (EPSMS), which is an automated tool for the selection of classification models, in the context of acute leukemia classification. EPSMS is the application of particle swarm optimization to the exploration of the search space of ensembles that can be formed by heterogeneous classification models in a machine learning toolbox. EPSMS does not require prior domain knowledge and it is able to select highly accurate classification models without user intervention. Furthermore, specific models can be used for different classification tasks. We report experimental results for acute leukemia classification with real data and show that EPSMS outperformed the best results obtained using manually designed classifiers with the same data. The highest performance using EPSMS was of 97.68% for two-type classification problems and of 94.21% for more than two types problems. To the best of our knowledge, these are the best results reported for this data set. Compared with previous studies, these improvements were consistent among different type/subtype classification tasks, different features extracted from images, and different feature extraction regions. The performance improvements were statistically significant

  20. Dynamical mean-field theory of noisy spiking neuron ensembles: Application to the Hodgkin-Huxley model

    International Nuclear Information System (INIS)

    Hasegawa, Hideo

    2003-01-01

    A dynamical mean-field approximation (DMA) previously proposed by the present author [H. Hasegawa, Phys. Rev E 67, 041903 (2003)] has been extended to ensembles described by a general noisy spiking neuron model. Ensembles of N-unit neurons, each of which is expressed by coupled K-dimensional differential equations (DEs), are assumed to be subject to spatially correlated white noises. The original KN-dimensional stochastic DEs have been replaced by K(K+2)-dimensional deterministic DEs expressed in terms of means and the second-order moments of local and global variables: the fourth-order contributions are taken into account by the Gaussian decoupling approximation. Our DMA has been applied to an ensemble of Hodgkin-Huxley (HH) neurons (K=4), for which effects of the noise, the coupling strength, and the ensemble size on the response to a single-spike input have been investigated. Numerical results calculated by the DMA theory are in good agreement with those obtained by direct simulations, although the former computation is about a thousand times faster than the latter for a typical HH neuron ensemble with N=100

  1. Extreme winds over Europe in the ENSEMBLES regional climate models

    Directory of Open Access Journals (Sweden)

    S. D. Outten

    2013-05-01

    Full Text Available Extreme winds cause vast amounts of damage every year and represent a major concern for numerous industries including construction, afforestation, wind energy and many others. Under a changing climate, the intensity and frequency of extreme events are expected to change, and accurate projections of these changes will be invaluable to decision makers and society as a whole. This work examines four regional climate model downscalings over Europe following the SRES A1B scenario from the "ENSEMBLE-based Predictions of Climate Changes and their Impacts" project (ENSEMBLES. It investigates the projected changes in the 50 yr return wind speeds and the associated uncertainties. This is accomplished by employing the peaks-over-threshold method with the use of the generalised Pareto distribution. The models show that, for much of Europe, the 50 yr return wind is projected to change by less than 2 m s−1, while the uncertainties associated with the statistical estimates are larger than this. In keeping with previous works in this field, the largest source of uncertainty is found to be the inter-model spread, with some locations showing differences in the 50 yr return wind of over 20 m s−1 between two different downscalings.

  2. Decadal climate predictions improved by ocean ensemble dispersion filtering

    Science.gov (United States)

    Kadow, C.; Illing, S.; Kröner, I.; Ulbrich, U.; Cubasch, U.

    2017-06-01

    Decadal predictions by Earth system models aim to capture the state and phase of the climate several years in advance. Atmosphere-ocean interaction plays an important role for such climate forecasts. While short-term weather forecasts represent an initial value problem and long-term climate projections represent a boundary condition problem, the decadal climate prediction falls in-between these two time scales. In recent years, more precise initialization techniques of coupled Earth system models and increased ensemble sizes have improved decadal predictions. However, climate models in general start losing the initialized signal and its predictive skill from one forecast year to the next. Here we show that the climate prediction skill of an Earth system model can be improved by a shift of the ocean state toward the ensemble mean of its individual members at seasonal intervals. We found that this procedure, called ensemble dispersion filter, results in more accurate results than the standard decadal prediction. Global mean and regional temperature, precipitation, and winter cyclone predictions show an increased skill up to 5 years ahead. Furthermore, the novel technique outperforms predictions with larger ensembles and higher resolution. Our results demonstrate how decadal climate predictions benefit from ocean ensemble dispersion filtering toward the ensemble mean.Plain Language SummaryDecadal predictions aim to predict the climate several years in advance. Atmosphere-ocean interaction plays an important role for such climate forecasts. The ocean memory due to its heat capacity holds big potential skill. In recent years, more precise initialization techniques of coupled Earth system models (incl. atmosphere and ocean) have improved decadal predictions. Ensembles are another important aspect. Applying slightly perturbed predictions to trigger the famous butterfly effect results in an ensemble. Instead of evaluating one prediction, but the whole ensemble with its

  3. A class of energy-based ensembles in Tsallis statistics

    International Nuclear Information System (INIS)

    Chandrashekar, R; Naina Mohammed, S S

    2011-01-01

    A comprehensive investigation is carried out on the class of energy-based ensembles. The eight ensembles are divided into two main classes. In the isothermal class of ensembles the individual members are at the same temperature. A unified framework is evolved to describe the four isothermal ensembles using the currently accepted third constraint formalism. The isothermal–isobaric, grand canonical and generalized ensembles are illustrated through a study of the classical nonrelativistic and extreme relativistic ideal gas models. An exact calculation is possible only in the case of the isothermal–isobaric ensemble. The study of the ideal gas models in the grand canonical and the generalized ensembles has been carried out using a perturbative procedure with the nonextensivity parameter (1 − q) as the expansion parameter. Though all the thermodynamic quantities have been computed up to a particular order in (1 − q) the procedure can be extended up to any arbitrary order in the expansion parameter. In the adiabatic class of ensembles the individual members of the ensemble have the same value of the heat function and a unified formulation to described all four ensembles is given. The nonrelativistic and the extreme relativistic ideal gases are studied in the isoenthalpic–isobaric ensemble, the adiabatic ensemble with number fluctuations and the adiabatic ensemble with number and particle fluctuations

  4. An Ensemble Nonlinear Model Predictive Control Algorithm in an Artificial Pancreas for People with Type 1 Diabetes

    DEFF Research Database (Denmark)

    Boiroux, Dimitri; Hagdrup, Morten; Mahmoudi, Zeinab

    2016-01-01

    patients with different physiological parameters and a time-varying insulin sensitivity using the Medtronic Virtual Patient (MVP) model. We augment the MVP model with stochastic diffusion terms, time-varying insulin sensitivity and noise-corrupted CGM measurements. We consider meal challenges where......This paper presents a novel ensemble nonlinear model predictive control (NMPC) algorithm for glucose regulation in type 1 diabetes. In this approach, we consider a number of scenarios describing different uncertainties, for instance meals or metabolic variations. We simulate a population of 9...... the uncertainty in meal size is ±50%. Numerical results show that the ensemble NMPC reduces the risk of hypoglycemia compared to standard NMPC in the case where the meal size is overestimated or correctly estimated at the expense of a slightly increased number of hyperglycemia. Therefore, ensemble MPC...

  5. A simple method for assessing hyaluronic acid production by cumulus-oocyte complexes

    Czech Academy of Sciences Publication Activity Database

    Zámostná, K.; Nevoral, J.; Kott, T.; Procházka, Radek; Orsák, M.; Šulc, M.; Pajkošová, V.; Pavlík, V.; Žalmanová, T.; Hošková, K.; Jílek, F.; Klein, P.

    2016-01-01

    Roč. 61, č. 6 (2016), s. 251-261 ISSN 1212-1819 R&D Projects: GA MZe(CZ) QJ1510138 Institutional support: RVO:67985904 Keywords : oocyte * meiotic maturation * cumulus expanssion Subject RIV: GI - Animal Husbandry ; Breeding Impact factor: 0.741, year: 2016

  6. Applying Multimodel Ensemble from Regional Climate Models for Improving Runoff Projections on Semiarid Regions of Spain

    Science.gov (United States)

    Garcia Galiano, S. G.; Olmos, P.; Giraldo Osorio, J. D.

    2015-12-01

    In the Mediterranean area, significant changes on temperature and precipitation are expected throughout the century. These trends could exacerbate the existing conditions in regions already vulnerable to climatic variability, reducing the water availability. Improving knowledge about plausible impacts of climate change on water cycle processes at basin scale, is an important step for building adaptive capacity to the impacts in this region, where severe water shortages are expected for the next decades. RCMs ensemble in combination with distributed hydrological models with few parameters, constitutes a valid and robust methodology to increase the reliability of climate and hydrological projections. For reaching this objective, a novel methodology for building Regional Climate Models (RCMs) ensembles of meteorological variables (rainfall an temperatures), was applied. RCMs ensembles are justified for increasing the reliability of climate and hydrological projections. The evaluation of RCMs goodness-of-fit to build the ensemble is based on empirical probability density functions (PDF) extracted from both RCMs dataset and a highly resolution gridded observational dataset, for the time period 1961-1990. The applied method is considering the seasonal and annual variability of the rainfall and temperatures. The RCMs ensembles constitute the input to a distributed hydrological model at basin scale, for assessing the runoff projections. The selected hydrological model is presenting few parameters in order to reduce the uncertainties involved. The study basin corresponds to a head basin of Segura River Basin, located in the South East of Spain. The impacts on runoff and its trend from observational dataset and climate projections, were assessed. Considering the control period 1961-1990, plausible significant decreases in runoff for the time period 2021-2050, were identified.

  7. A Novel Multiscale Ensemble Carbon Price Prediction Model Integrating Empirical Mode Decomposition, Genetic Algorithm and Artificial Neural Network

    Directory of Open Access Journals (Sweden)

    Bangzhu Zhu

    2012-02-01

    Full Text Available Due to the movement and complexity of the carbon market, traditional monoscale forecasting approaches often fail to capture its nonstationary and nonlinear properties and accurately describe its moving tendencies. In this study, a multiscale ensemble forecasting model integrating empirical mode decomposition (EMD, genetic algorithm (GA and artificial neural network (ANN is proposed to forecast carbon price. Firstly, the proposed model uses EMD to decompose carbon price data into several intrinsic mode functions (IMFs and one residue. Then, the IMFs and residue are composed into a high frequency component, a low frequency component and a trend component which have similar frequency characteristics, simple components and strong regularity using the fine-to-coarse reconstruction algorithm. Finally, those three components are predicted using an ANN trained by GA, i.e., a GAANN model, and the final forecasting results can be obtained by the sum of these three forecasting results. For verification and testing, two main carbon future prices with different maturity in the European Climate Exchange (ECX are used to test the effectiveness of the proposed multiscale ensemble forecasting model. Empirical results obtained demonstrate that the proposed multiscale ensemble forecasting model can outperform the single random walk (RW, ARIMA, ANN and GAANN models without EMD preprocessing and the ensemble ARIMA model with EMD preprocessing.

  8. Cumulus Kuopion työmatkustajien asiakastyytyväisyys

    OpenAIRE

    Lampinen, Miia; Lamminmäki, Roosa-Maria

    2015-01-01

    Eri hotelliryhmissä asiakkaat erotellaan heidän tarpeidensa ja toiveidensa mukaan. Asiakas on se, joka määrittelee yrityksen laadun. Business-asiakkaat valitsevat usein kansallisen tai kansainvälisen ketjuhotellin, joka täyttää tietyt laatustandardit. Yleensä he myös sitoutuvat ketjun kanta-asiakasohjelmiin. Kanta-asiakasjärjestelmät sisältävät yleensä edullisempien majoitusten lisäksi muitakin etuja. Cumulus Kuopio on hotelli hyvien kulkuyhteyksien päässä, aivan Kuopion rautatieaseman vieres...

  9. Climatic Models Ensemble-based Mid-21st Century Runoff Projections: A Bayesian Framework

    Science.gov (United States)

    Achieng, K. O.; Zhu, J.

    2017-12-01

    There are a number of North American Regional Climate Change Assessment Program (NARCCAP) climatic models that have been used to project surface runoff in the mid-21st century. Statistical model selection techniques are often used to select the model that best fits data. However, model selection techniques often lead to different conclusions. In this study, ten models are averaged in Bayesian paradigm to project runoff. Bayesian Model Averaging (BMA) is used to project and identify effect of model uncertainty on future runoff projections. Baseflow separation - a two-digital filter which is also called Eckhardt filter - is used to separate USGS streamflow (total runoff) into two components: baseflow and surface runoff. We use this surface runoff as the a priori runoff when conducting BMA of runoff simulated from the ten RCM models. The primary objective of this study is to evaluate how well RCM multi-model ensembles simulate surface runoff, in a Bayesian framework. Specifically, we investigate and discuss the following questions: How well do ten RCM models ensemble jointly simulate surface runoff by averaging over all the models using BMA, given a priori surface runoff? What are the effects of model uncertainty on surface runoff simulation?

  10. Global Optimization Ensemble Model for Classification Methods

    Science.gov (United States)

    Anwar, Hina; Qamar, Usman; Muzaffar Qureshi, Abdul Wahab

    2014-01-01

    Supervised learning is the process of data mining for deducing rules from training datasets. A broad array of supervised learning algorithms exists, every one of them with its own advantages and drawbacks. There are some basic issues that affect the accuracy of classifier while solving a supervised learning problem, like bias-variance tradeoff, dimensionality of input space, and noise in the input data space. All these problems affect the accuracy of classifier and are the reason that there is no global optimal method for classification. There is not any generalized improvement method that can increase the accuracy of any classifier while addressing all the problems stated above. This paper proposes a global optimization ensemble model for classification methods (GMC) that can improve the overall accuracy for supervised learning problems. The experimental results on various public datasets showed that the proposed model improved the accuracy of the classification models from 1% to 30% depending upon the algorithm complexity. PMID:24883382

  11. Global Optimization Ensemble Model for Classification Methods

    Directory of Open Access Journals (Sweden)

    Hina Anwar

    2014-01-01

    Full Text Available Supervised learning is the process of data mining for deducing rules from training datasets. A broad array of supervised learning algorithms exists, every one of them with its own advantages and drawbacks. There are some basic issues that affect the accuracy of classifier while solving a supervised learning problem, like bias-variance tradeoff, dimensionality of input space, and noise in the input data space. All these problems affect the accuracy of classifier and are the reason that there is no global optimal method for classification. There is not any generalized improvement method that can increase the accuracy of any classifier while addressing all the problems stated above. This paper proposes a global optimization ensemble model for classification methods (GMC that can improve the overall accuracy for supervised learning problems. The experimental results on various public datasets showed that the proposed model improved the accuracy of the classification models from 1% to 30% depending upon the algorithm complexity.

  12. Ensemble of regional climate model projections for Ireland

    Science.gov (United States)

    Nolan, Paul; McGrath, Ray

    2016-04-01

    The method of Regional Climate Modelling (RCM) was employed to assess the impacts of a warming climate on the mid-21st-century climate of Ireland. The RCM simulations were run at high spatial resolution, up to 4 km, thus allowing a better evaluation of the local effects of climate change. Simulations were run for a reference period 1981-2000 and future period 2041-2060. Differences between the two periods provide a measure of climate change. To address the issue of uncertainty, a multi-model ensemble approach was employed. Specifically, the future climate of Ireland was simulated using three different RCMs, driven by four Global Climate Models (GCMs). To account for the uncertainty in future emissions, a number of SRES (B1, A1B, A2) and RCP (4.5, 8.5) emission scenarios were used to simulate the future climate. Through the ensemble approach, the uncertainty in the RCM projections can be partially quantified, thus providing a measure of confidence in the predictions. In addition, likelihood values can be assigned to the projections. The RCMs used in this work are the COnsortium for Small-scale MOdeling-Climate Limited-area Modelling (COSMO-CLM, versions 3 and 4) model and the Weather Research and Forecasting (WRF) model. The GCMs used are the Max Planck Institute's ECHAM5, the UK Met Office's HadGEM2-ES, the CGCM3.1 model from the Canadian Centre for Climate Modelling and the EC-Earth consortium GCM. The projections for mid-century indicate an increase of 1-1.6°C in mean annual temperatures, with the largest increases seen in the east of the country. Warming is enhanced for the extremes (i.e. hot or cold days), with the warmest 5% of daily maximum summer temperatures projected to increase by 0.7-2.6°C. The coldest 5% of night-time temperatures in winter are projected to rise by 1.1-3.1°C. Averaged over the whole country, the number of frost days is projected to decrease by over 50%. The projections indicate an average increase in the length of the growing season

  13. Quantum ensembles of quantum classifiers.

    Science.gov (United States)

    Schuld, Maria; Petruccione, Francesco

    2018-02-09

    Quantum machine learning witnesses an increasing amount of quantum algorithms for data-driven decision making, a problem with potential applications ranging from automated image recognition to medical diagnosis. Many of those algorithms are implementations of quantum classifiers, or models for the classification of data inputs with a quantum computer. Following the success of collective decision making with ensembles in classical machine learning, this paper introduces the concept of quantum ensembles of quantum classifiers. Creating the ensemble corresponds to a state preparation routine, after which the quantum classifiers are evaluated in parallel and their combined decision is accessed by a single-qubit measurement. This framework naturally allows for exponentially large ensembles in which - similar to Bayesian learning - the individual classifiers do not have to be trained. As an example, we analyse an exponentially large quantum ensemble in which each classifier is weighed according to its performance in classifying the training data, leading to new results for quantum as well as classical machine learning.

  14. Heat stress effects on the cumulus cells surrounding the bovine oocyte during maturation: altered matrix metallopeptidase 9 and progesterone production.

    Science.gov (United States)

    Rispoli, L A; Payton, R R; Gondro, C; Saxton, A M; Nagle, K A; Jenkins, B W; Schrick, F N; Edwards, J L

    2013-08-01

    When the effects of heat stress are detrimental during maturation, cumulus cells are intimately associated with the oocyte. To determine the extent to which heat stress affects these cells, in this study, transcriptome profiles of the cumulus that surrounded control and heat-stressed oocytes (41 °C during the first 12 h only and then shifted back to 38.5 °C) during in vitro maturation (IVM) were compared using Affymetrix bovine microarrays. The comparison of cumulus-derived profiles revealed a number of transcripts whose levels were increased (n=11) or decreased (n=13) ≥ twofold after heat stress exposure (P1.7-fold decrease in the protein levels of latent matrix metallopeptidase 9 (proMMP9). Heat-induced reductions in transcript levels were noted at 6 h IVM with reductions in proMMP9 protein levels at 18 h IVM (P=0.0002). Independent of temperature, proMMP9 levels at 24 h IVM were positively correlated with the development rate of blastocysts (R²=0.36; P=0.002). The production of progesterone increased during maturation; heat-induced increases were evident by 12 h IVM (P=0.002). Both MMP9 and progesterone are associated with the developmental competence of the oocyte; thus, it seems plausible for some of the negative consequences of heat stress on the cumulus-oocyte complex to be mediated through heat-induced perturbations occurring in the surrounding cumulus.

  15. Ensemble Data Mining Methods

    Data.gov (United States)

    National Aeronautics and Space Administration — Ensemble Data Mining Methods, also known as Committee Methods or Model Combiners, are machine learning methods that leverage the power of multiple models to achieve...

  16. Concrete ensemble Kalman filters with rigorous catastrophic filter divergence.

    Science.gov (United States)

    Kelly, David; Majda, Andrew J; Tong, Xin T

    2015-08-25

    The ensemble Kalman filter and ensemble square root filters are data assimilation methods used to combine high-dimensional, nonlinear dynamical models with observed data. Ensemble methods are indispensable tools in science and engineering and have enjoyed great success in geophysical sciences, because they allow for computationally cheap low-ensemble-state approximation for extremely high-dimensional turbulent forecast models. From a theoretical perspective, the dynamical properties of these methods are poorly understood. One of the central mysteries is the numerical phenomenon known as catastrophic filter divergence, whereby ensemble-state estimates explode to machine infinity, despite the true state remaining in a bounded region. In this article we provide a breakthrough insight into the phenomenon, by introducing a simple and natural forecast model that transparently exhibits catastrophic filter divergence under all ensemble methods and a large set of initializations. For this model, catastrophic filter divergence is not an artifact of numerical instability, but rather a true dynamical property of the filter. The divergence is not only validated numerically but also proven rigorously. The model cleanly illustrates mechanisms that give rise to catastrophic divergence and confirms intuitive accounts of the phenomena given in past literature.

  17. Influence of blocking on Northern European and Western Russian heatwaves in large climate model ensembles

    Science.gov (United States)

    Schaller, N.; Sillmann, J.; Anstey, J.; Fischer, E. M.; Grams, C. M.; Russo, S.

    2018-05-01

    Better preparedness for summer heatwaves could mitigate their adverse effects on society. This can potentially be attained through an increased understanding of the relationship between heatwaves and one of their main dynamical drivers, atmospheric blocking. In the 1979–2015 period, we find that there is a significant correlation between summer heatwave magnitudes and the number of days influenced by atmospheric blocking in Northern Europe and Western Russia. Using three large global climate model ensembles, we find similar correlations, indicating that these three models are able to represent the relationship between extreme temperature and atmospheric blocking, despite having biases in their simulation of individual climate variables such as temperature or geopotential height. Our results emphasize the need to use large ensembles of different global climate models as single realizations do not always capture this relationship. The three large ensembles further suggest that the relationship between summer heatwaves and atmospheric blocking will not change in the future. This could be used to statistically model heatwaves with atmospheric blocking as a covariate and aid decision-makers in planning disaster risk reduction and adaptation to climate change.

  18. Flood Forecasting Based on TIGGE Precipitation Ensemble Forecast

    Directory of Open Access Journals (Sweden)

    Jinyin Ye

    2016-01-01

    Full Text Available TIGGE (THORPEX International Grand Global Ensemble was a major part of the THORPEX (Observing System Research and Predictability Experiment. It integrates ensemble precipitation products from all the major forecast centers in the world and provides systematic evaluation on the multimodel ensemble prediction system. Development of meteorologic-hydrologic coupled flood forecasting model and early warning model based on the TIGGE precipitation ensemble forecast can provide flood probability forecast, extend the lead time of the flood forecast, and gain more time for decision-makers to make the right decision. In this study, precipitation ensemble forecast products from ECMWF, NCEP, and CMA are used to drive distributed hydrologic model TOPX. We focus on Yi River catchment and aim to build a flood forecast and early warning system. The results show that the meteorologic-hydrologic coupled model can satisfactorily predict the flow-process of four flood events. The predicted occurrence time of peak discharges is close to the observations. However, the magnitude of the peak discharges is significantly different due to various performances of the ensemble prediction systems. The coupled forecasting model can accurately predict occurrence of the peak time and the corresponding risk probability of peak discharge based on the probability distribution of peak time and flood warning, which can provide users a strong theoretical foundation and valuable information as a promising new approach.

  19. Using ensemble forecasting for wind power

    Energy Technology Data Exchange (ETDEWEB)

    Giebel, G.; Landberg, L.; Badger, J. [Risoe National Lab., Roskilde (Denmark); Sattler, K.

    2003-07-01

    Short-term prediction of wind power has a long tradition in Denmark. It is an essential tool for the operators to keep the grid from becoming unstable in a region like Jutland, where more than 27% of the electricity consumption comes from wind power. This means that the minimum load is already lower than the maximum production from wind energy alone. Danish utilities have therefore used short-term prediction of wind energy since the mid-90ies. However, the accuracy is still far from being sufficient in the eyes of the utilities (used to have load forecasts accurate to within 5% on a one-week horizon). The Ensemble project tries to alleviate the dependency of the forecast quality on one model by using multiple models, and also will investigate the possibilities of using the model spread of multiple models or of dedicated ensemble runs for a prediction of the uncertainty of the forecast. Usually, short-term forecasting works (especially for the horizon beyond 6 hours) by gathering input from a Numerical Weather Prediction (NWP) model. This input data is used together with online data in statistical models (this is the case eg in Zephyr/WPPT) to yield the output of the wind farms or of a whole region for the next 48 hours (only limited by the NWP model horizon). For the accuracy of the final production forecast, the accuracy of the NWP prediction is paramount. While many efforts are underway to increase the accuracy of the NWP forecasts themselves (which ultimately are limited by the amount of computing power available, the lack of a tight observational network on the Atlantic and limited physics modelling), another approach is to use ensembles of different models or different model runs. This can be either an ensemble of different models output for the same area, using different data assimilation schemes and different model physics, or a dedicated ensemble run by a large institution, where the same model is run with slight variations in initial conditions and

  20. Ensemble Methods

    Science.gov (United States)

    Re, Matteo; Valentini, Giorgio

    2012-03-01

    Ensemble methods are statistical and computational learning procedures reminiscent of the human social learning behavior of seeking several opinions before making any crucial decision. The idea of combining the opinions of different "experts" to obtain an overall “ensemble” decision is rooted in our culture at least from the classical age of ancient Greece, and it has been formalized during the Enlightenment with the Condorcet Jury Theorem[45]), which proved that the judgment of a committee is superior to those of individuals, provided the individuals have reasonable competence. Ensembles are sets of learning machines that combine in some way their decisions, or their learning algorithms, or different views of data, or other specific characteristics to obtain more reliable and more accurate predictions in supervised and unsupervised learning problems [48,116]. A simple example is represented by the majority vote ensemble, by which the decisions of different learning machines are combined, and the class that receives the majority of “votes” (i.e., the class predicted by the majority of the learning machines) is the class predicted by the overall ensemble [158]. In the literature, a plethora of terms other than ensembles has been used, such as fusion, combination, aggregation, and committee, to indicate sets of learning machines that work together to solve a machine learning problem [19,40,56,66,99,108,123], but in this chapter we maintain the term ensemble in its widest meaning, in order to include the whole range of combination methods. Nowadays, ensemble methods represent one of the main current research lines in machine learning [48,116], and the interest of the research community on ensemble methods is witnessed by conferences and workshops specifically devoted to ensembles, first of all the multiple classifier systems (MCS) conference organized by Roli, Kittler, Windeatt, and other researchers of this area [14,62,85,149,173]. Several theories have been

  1. Accounting for model error due to unresolved scales within ensemble Kalman filtering

    OpenAIRE

    Mitchell, Lewis; Carrassi, Alberto

    2014-01-01

    We propose a method to account for model error due to unresolved scales in the context of the ensemble transform Kalman filter (ETKF). The approach extends to this class of algorithms the deterministic model error formulation recently explored for variational schemes and extended Kalman filter. The model error statistic required in the analysis update is estimated using historical reanalysis increments and a suitable model error evolution law. Two different versions of the method are describe...

  2. Microphysics in Multi-scale Modeling System with Unified Physics

    Science.gov (United States)

    Tao, Wei-Kuo

    2012-01-01

    Recently, a multi-scale modeling system with unified physics was developed at NASA Goddard. It consists of (1) a cloud-resolving model (Goddard Cumulus Ensemble model, GCE model), (2) a regional scale model (a NASA unified weather research and forecast, WRF), (3) a coupled CRM and global model (Goddard Multi-scale Modeling Framework, MMF), and (4) a land modeling system. The same microphysical processes, long and short wave radiative transfer and land processes and the explicit cloud-radiation, and cloud-land surface interactive processes are applied in this multi-scale modeling system. This modeling system has been coupled with a multi-satellite simulator to use NASA high-resolution satellite data to identify the strengths and weaknesses of cloud and precipitation processes simulated by the model. In this talk, a review of developments and applications of the multi-scale modeling system will be presented. In particular, the microphysics development and its performance for the multi-scale modeling system will be presented.

  3. Developing an Ensemble Prediction System based on COSMO-DE

    Science.gov (United States)

    Theis, S.; Gebhardt, C.; Buchhold, M.; Ben Bouallègue, Z.; Ohl, R.; Paulat, M.; Peralta, C.

    2010-09-01

    The numerical weather prediction model COSMO-DE is a configuration of the COSMO model with a horizontal grid size of 2.8 km. It has been running operationally at DWD since 2007, it covers the area of Germany and produces forecasts with a lead time of 0-21 hours. The model COSMO-DE is convection-permitting, which means that it does without a parametrisation of deep convection and simulates deep convection explicitly. One aim is an improved forecast of convective heavy rain events. Convection-permitting models are in operational use at several weather services, but currently not in ensemble mode. It is expected that an ensemble system could reveal the advantages of a convection-permitting model even better. The probabilistic approach is necessary, because the explicit simulation of convective processes for more than a few hours cannot be viewed as a deterministic forecast anymore. This is due to the chaotic behaviour and short life cycle of the processes which are simulated explicitly now. In the framework of the project COSMO-DE-EPS, DWD is developing and implementing an ensemble prediction system (EPS) for the model COSMO-DE. The project COSMO-DE-EPS comprises the generation of ensemble members, as well as the verification and visualization of the ensemble forecasts and also statistical postprocessing. A pre-operational mode of the EPS with 20 ensemble members is foreseen to start in 2010. Operational use is envisaged to start in 2012, after an upgrade to 40 members and inclusion of statistical postprocessing. The presentation introduces the project COSMO-DE-EPS and describes the design of the ensemble as it is planned for the pre-operational mode. In particular, the currently implemented method for the generation of ensemble members will be explained and discussed. The method includes variations of initial conditions, lateral boundary conditions, and model physics. At present, pragmatic methods are applied which resemble the basic ideas of a multi-model approach

  4. An application of ensemble/multi model approach for wind power production forecast.

    Science.gov (United States)

    Alessandrini, S.; Decimi, G.; Hagedorn, R.; Sperati, S.

    2010-09-01

    model) seems to reach similar level of accuracy of those of the mesocale models (LAMI and RAMS). Finally we have focused on the possibility of using the ensemble model (ECMWF) to estimate the hourly, three days ahead, power forecast accuracy. Contingency diagram between RMSE of the deterministic power forecast and the ensemble members spread of wind forecast have been produced. From this first analysis it seems that ensemble spread could be used as an indicator of the forecast's accuracy at least for the first day ahead period. In fact low spreads often correspond to low forecast error. For longer forecast horizon the correlation between RMSE and ensemble spread decrease becoming too low to be used for this purpose.

  5. Structural characterization of PTX3 disulfide bond network and its multimeric status in cumulus matrix organization.

    Science.gov (United States)

    Inforzato, Antonio; Rivieccio, Vincenzo; Morreale, Antonio P; Bastone, Antonio; Salustri, Antonietta; Scarchilli, Laura; Verdoliva, Antonio; Vincenti, Silvia; Gallo, Grazia; Chiapparino, Caterina; Pacello, Lucrezia; Nucera, Eleonora; Serlupi-Crescenzi, Ottaviano; Day, Anthony J; Bottazzi, Barbara; Mantovani, Alberto; De Santis, Rita; Salvatori, Giovanni

    2008-04-11

    PTX3 is an acute phase glycoprotein that plays key roles in resistance to certain pathogens and in female fertility. PTX3 exerts its functions by interacting with a number of structurally unrelated molecules, a capacity that is likely to rely on its complex multimeric structure stabilized by interchain disulfide bonds. In this study, PAGE analyses performed under both native and denaturing conditions indicated that human recombinant PTX3 is mainly composed of covalently linked octamers. The network of disulfide bonds supporting this octameric assembly was resolved by mass spectrometry and Cys to Ser site-directed mutagenesis. Here we report that cysteine residues at positions 47, 49, and 103 in the N-terminal domain form three symmetric interchain disulfide bonds stabilizing four protein subunits in a tetrameric arrangement. Additional interchain disulfide bonds formed by the C-terminal domain cysteines Cys(317) and Cys(318) are responsible for linking the PTX3 tetramers into octamers. We also identified three intrachain disulfide bonds within the C-terminal domain that we used as structural constraints to build a new three-dimensional model for this domain. Previously it has been shown that PTX3 is a key component of the cumulus oophorus extracellular matrix, which forms around the oocyte prior to ovulation, because cumuli from PTX3(-/-) mice show defective matrix organization. Recombinant PTX3 is able to restore the normal phenotype ex vivo in cumuli from PTX3(-/-) mice. Here we demonstrate that PTX3 Cys to Ser mutants, mainly assembled into tetramers, exhibited wild type rescue activity, whereas a mutant, predominantly composed of dimers, had impaired functionality. These findings indicate that protein oligomerization is essential for PTX3 activity within the cumulus matrix and implicate PTX3 tetramers as the functional molecular units required for cumulus matrix organization and stabilization.

  6. Rotationally invariant family of Levy-like random matrix ensembles

    International Nuclear Information System (INIS)

    Choi, Jinmyung; Muttalib, K A

    2009-01-01

    We introduce a family of rotationally invariant random matrix ensembles characterized by a parameter λ. While λ = 1 corresponds to well-known critical ensembles, we show that λ ≠ 1 describes 'Levy-like' ensembles, characterized by power-law eigenvalue densities. For λ > 1 the density is bounded, as in Gaussian ensembles, but λ < 1 describes ensembles characterized by densities with long tails. In particular, the model allows us to evaluate, in terms of a novel family of orthogonal polynomials, the eigenvalue correlations for Levy-like ensembles. These correlations differ qualitatively from those in either the Gaussian or the critical ensembles. (fast track communication)

  7. A framework for the selection and ensemble development of flood vulnerability models

    Science.gov (United States)

    Figueiredo, Rui; Schröter, Kai; Kreibich, Heidi; Martina, Mario

    2017-04-01

    Effective understanding and management of flood risk requires comprehensive risk assessment studies that consider not only the hazard component, but also the impacts that the phenomena may have on the built environment, economy and society. This integrated approach has gained importance over recent decades, and with it so has the scientific attention given to flood vulnerability models describing the relationships between flood intensity metrics and damage to physical assets, also known as flood loss models. Despite considerable progress in this field, many challenges persist. Flood damage mechanisms are complex and depend on multiple variables, which can have different degrees of importance depending on the application setting. In addition, data required for the development and validation of such models tend to be scarce, particularly in data poor regions. These issues are reflected in the large amount of flood vulnerability models that are available in the literature today, as well as in their high heterogeneity: they are built with different modelling approaches, in different geographic contexts, utilizing different explanatory variables, and with varying levels of complexity. Notwithstanding recent developments in this area, uncertainty remains high, and large disparities exist among models. For these reasons, identifying which model or models, given their properties, are appropriate for a given context is not straightforward. In the present study, we propose a framework that guides the structured selection of flood vulnerability models and enables ranking them according to their suitability for a certain application, based on expert judgement. The approach takes advantage of current state of the art and most up-to-date knowledge on flood vulnerability processes. Given the heterogeneity and uncertainty currently present in flood vulnerability models, we propose the use of a model ensemble. With this in mind, the proposed approach is based on a weighting scheme

  8. An Ensemble Recentering Kalman Filter with an Application to Argo Temperature Data Assimilation into the NASA GEOS-5 Coupled Model

    Science.gov (United States)

    Keppenne, Christian L.

    2013-01-01

    A two-step ensemble recentering Kalman filter (ERKF) analysis scheme is introduced. The algorithm consists of a recentering step followed by an ensemble Kalman filter (EnKF) analysis step. The recentering step is formulated such as to adjust the prior distribution of an ensemble of model states so that the deviations of individual samples from the sample mean are unchanged but the original sample mean is shifted to the prior position of the most likely particle, where the likelihood of each particle is measured in terms of closeness to a chosen subset of the observations. The computational cost of the ERKF is essentially the same as that of a same size EnKF. The ERKF is applied to the assimilation of Argo temperature profiles into the OGCM component of an ensemble of NASA GEOS-5 coupled models. Unassimilated Argo salt data are used for validation. A surprisingly small number (16) of model trajectories is sufficient to significantly improve model estimates of salinity over estimates from an ensemble run without assimilation. The two-step algorithm also performs better than the EnKF although its performance is degraded in poorly observed regions.

  9. Global Ensemble Forecast System (GEFS) [1 Deg.

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — The Global Ensemble Forecast System (GEFS) is a weather forecast model made up of 21 separate forecasts, or ensemble members. The National Centers for Environmental...

  10. Can the confidence in long range atmospheric transport models be increased? The pan European experience of ensemble

    International Nuclear Information System (INIS)

    Galmarini, S.; Bianconi, R.; Mikkelsen, T.

    2003-01-01

    Full text: In the unfortunate event of an accidental release of radioactive material to the environment, the first concern for early-phase emergency response is atmospheric dispersion. For this purpose, several countries worldwide use operational Long Range Atmospheric Transport (LRAT) models to produce predictions of the event evolution over the continental scale to determine whether, when and how the radioactive cloud is going to hit their country. While presenting the multi-model ensemble dispersion forecast system (ENSEMBLE), the paper seeks to answer the following questions: is atmospheric dispersion forecasting an important asset of the early-phase emergency response management?; Is there a 'Perfect Atmospheric Dispersion Model'?; Is there a way to make the results of dispersion models more reliable and trustworthy? Several activities conducted during the 1990's, sought to estimate quantitatively the capability of LRAT models to forecast the atmospheric dispersion of radionuclides in the atmosphere. The results obtained clearly demonstrated that: the predictions of the various operational LRAT models used worldwide do not systematically agree (mainly due to conceptual differences in model structure and differences in the meteorological forecasts used to simulate the dispersion); none of the models used in the various countries is better than others under all circumstances and therefore there is no objective indication that shows one or few models to be the 'perfect model/s'. Given the realistic scenario that an accident can take place any time, any national authority is however faced with the practical need of managing the emergency and therefore with the dilemma: 'shall one rely an a LRAT model or only an the now cast provided by a monitoring network?' and 'to what extent are a model predictions going to be deceptive in the decision making process?' Since it goes without saying that even a vague idea an the future evolution of a dispersion process is better

  11. Combining super-ensembles and statistical emulation to improve a regional climate and vegetation model

    Science.gov (United States)

    Hawkins, L. R.; Rupp, D. E.; Li, S.; Sarah, S.; McNeall, D. J.; Mote, P.; Betts, R. A.; Wallom, D.

    2017-12-01

    Changing regional patterns of surface temperature, precipitation, and humidity may cause ecosystem-scale changes in vegetation, altering the distribution of trees, shrubs, and grasses. A changing vegetation distribution, in turn, alters the albedo, latent heat flux, and carbon exchanged with the atmosphere with resulting feedbacks onto the regional climate. However, a wide range of earth-system processes that affect the carbon, energy, and hydrologic cycles occur at sub grid scales in climate models and must be parameterized. The appropriate parameter values in such parameterizations are often poorly constrained, leading to uncertainty in predictions of how the ecosystem will respond to changes in forcing. To better understand the sensitivity of regional climate to parameter selection and to improve regional climate and vegetation simulations, we used a large perturbed physics ensemble and a suite of statistical emulators. We dynamically downscaled a super-ensemble (multiple parameter sets and multiple initial conditions) of global climate simulations using a 25-km resolution regional climate model HadRM3p with the land-surface scheme MOSES2 and dynamic vegetation module TRIFFID. We simultaneously perturbed land surface parameters relating to the exchange of carbon, water, and energy between the land surface and atmosphere in a large super-ensemble of regional climate simulations over the western US. Statistical emulation was used as a computationally cost-effective tool to explore uncertainties in interactions. Regions of parameter space that did not satisfy observational constraints were eliminated and an ensemble of parameter sets that reduce regional biases and span a range of plausible interactions among earth system processes were selected. This study demonstrated that by combining super-ensemble simulations with statistical emulation, simulations of regional climate could be improved while simultaneously accounting for a range of plausible land

  12. Ensemble averaging and stacking of ARIMA and GSTAR model for rainfall forecasting

    Science.gov (United States)

    Anggraeni, D.; Kurnia, I. F.; Hadi, A. F.

    2018-04-01

    Unpredictable rainfall changes can affect human activities, such as in agriculture, aviation, shipping which depend on weather forecasts. Therefore, we need forecasting tools with high accuracy in predicting the rainfall in the future. This research focus on local forcasting of the rainfall at Jember in 2005 until 2016, from 77 rainfall stations. The rainfall here was not only related to the occurrence of the previous of its stations, but also related to others, it’s called the spatial effect. The aim of this research is to apply the GSTAR model, to determine whether there are some correlations of spatial effect between one to another stations. The GSTAR model is an expansion of the space-time model that combines the time-related effects, the locations (stations) in a time series effects, and also the location it self. The GSTAR model will also be compared to the ARIMA model that completely ignores the independent variables. The forcested value of the ARIMA and of the GSTAR models then being combined using the ensemble forecasting technique. The averaging and stacking method of ensemble forecasting method here provide us the best model with higher acuracy model that has the smaller RMSE (Root Mean Square Error) value. Finally, with the best model we can offer a better local rainfall forecasting in Jember for the future.

  13. On-line Learning of Unlearnable True Teacher through Mobile Ensemble Teachers

    Science.gov (United States)

    Hirama, Takeshi; Hukushima, Koji

    2008-09-01

    The on-line learning of a hierarchical learning model is studied by a method based on statistical mechanics. In our model, a student of a simple perceptron learns from not a true teacher directly, but ensemble teachers who learn from a true teacher with a perceptron learning rule. Since the true teacher and ensemble teachers are expressed as nonmonotonic and simple perceptrons, respectively, the ensemble teachers go around the unlearnable true teacher with the distance between them fixed in an asymptotic steady state. The generalization performance of the student is shown to exceed that of the ensemble teachers in a transient state, as was shown in similar ensemble-teachers models. Furthermore, it is found that moving the ensemble teachers even in the steady state, in contrast to the fixed ensemble teachers, is efficient for the performance of the student.

  14. Monthly ENSO Forecast Skill and Lagged Ensemble Size

    Science.gov (United States)

    Trenary, L.; DelSole, T.; Tippett, M. K.; Pegion, K.

    2018-04-01

    The mean square error (MSE) of a lagged ensemble of monthly forecasts of the Niño 3.4 index from the Climate Forecast System (CFSv2) is examined with respect to ensemble size and configuration. Although the real-time forecast is initialized 4 times per day, it is possible to infer the MSE for arbitrary initialization frequency and for burst ensembles by fitting error covariances to a parametric model and then extrapolating to arbitrary ensemble size and initialization frequency. Applying this method to real-time forecasts, we find that the MSE consistently reaches a minimum for a lagged ensemble size between one and eight days, when four initializations per day are included. This ensemble size is consistent with the 8-10 day lagged ensemble configuration used operationally. Interestingly, the skill of both ensemble configurations is close to the estimated skill of the infinite ensemble. The skill of the weighted, lagged, and burst ensembles are found to be comparable. Certain unphysical features of the estimated error growth were tracked down to problems with the climatology and data discontinuities.

  15. Limit order book and its modeling in terms of Gibbs Grand-Canonical Ensemble

    Science.gov (United States)

    Bicci, Alberto

    2016-12-01

    In the domain of so called Econophysics some attempts have been already made for applying the theory of thermodynamics and statistical mechanics to economics and financial markets. In this paper a similar approach is made from a different perspective, trying to model the limit order book and price formation process of a given stock by the Grand-Canonical Gibbs Ensemble for the bid and ask orders. The application of the Bose-Einstein statistics to this ensemble allows then to derive the distribution of the sell and buy orders as a function of price. As a consequence we can define in a meaningful way expressions for the temperatures of the ensembles of bid orders and of ask orders, which are a function of minimum bid, maximum ask and closure prices of the stock as well as of the exchanged volume of shares. It is demonstrated that the difference between the ask and bid orders temperatures can be related to the VAO (Volume Accumulation Oscillator), an indicator empirically defined in Technical Analysis of stock markets. Furthermore the derived distributions for aggregate bid and ask orders can be subject to well defined validations against real data, giving a falsifiable character to the model.

  16. Does internal variability change in response to global warming? A large ensemble modelling study of tropical rainfall

    Science.gov (United States)

    Milinski, S.; Bader, J.; Jungclaus, J. H.; Marotzke, J.

    2017-12-01

    There is some consensus on mean state changes of rainfall under global warming; changes of the internal variability, on the other hand, are more difficult to analyse and have not been discussed as much despite their importance for understanding changes in extreme events, such as droughts or floodings. We analyse changes in the rainfall variability in the tropical Atlantic region. We use a 100-member ensemble of historical (1850-2005) model simulations with the Max Planck Institute for Meteorology Earth System Model (MPI-ESM1) to identify changes of internal rainfall variability. To investigate the effects of global warming on the internal variability, we employ an additional ensemble of model simulations with stronger external forcing (1% CO2-increase per year, same integration length as the historical simulations) with 68 ensemble members. The focus of our study is on the oceanic Atlantic ITCZ. We find that the internal variability of rainfall over the tropical Atlantic does change due to global warming and that these changes in variability are larger than changes in the mean state in some regions. From splitting the total variance into patterns of variability, we see that the variability on the southern flank of the ITCZ becomes more dominant, i.e. explaining a larger fraction of the total variance in a warmer climate. In agreement with previous studies, we find that changes in the mean state show an increase and narrowing of the ITCZ. The large ensembles allow us to do a statistically robust differentiation between the changes in variability that can be explained by internal variability and those that can be attributed to the external forcing. Furthermore, we argue that internal variability in a transient climate is only well defined in the ensemble domain and not in the temporal domain, which requires the use of a large ensemble.

  17. Multi-wheat-model ensemble responses to interannual climatic variability

    DEFF Research Database (Denmark)

    Ruane, A C; Hudson, N I; Asseng, S

    2016-01-01

    We compare 27 wheat models' yield responses to interannual climate variability, analyzed at locations in Argentina, Australia, India, and The Netherlands as part of the Agricultural Model Intercomparison and Improvement Project (AgMIP) Wheat Pilot. Each model simulated 1981–2010 grain yield, and ......-term warming, suggesting that additional processes differentiate climate change impacts from observed climate variability analogs and motivating continuing analysis and model development efforts.......We compare 27 wheat models' yield responses to interannual climate variability, analyzed at locations in Argentina, Australia, India, and The Netherlands as part of the Agricultural Model Intercomparison and Improvement Project (AgMIP) Wheat Pilot. Each model simulated 1981–2010 grain yield, and we...... evaluate results against the interannual variability of growing season temperature, precipitation, and solar radiation. The amount of information used for calibration has only a minor effect on most models' climate response, and even small multi-model ensembles prove beneficial. Wheat model clusters reveal...

  18. Can single classifiers be as useful as model ensembles to produce benthic seabed substratum maps?

    Science.gov (United States)

    Turner, Joseph A.; Babcock, Russell C.; Hovey, Renae; Kendrick, Gary A.

    2018-05-01

    Numerous machine-learning classifiers are available for benthic habitat map production, which can lead to different results. This study highlights the performance of the Random Forest (RF) classifier, which was significantly better than Classification Trees (CT), Naïve Bayes (NB), and a multi-model ensemble in terms of overall accuracy, Balanced Error Rate (BER), Kappa, and area under the curve (AUC) values. RF accuracy was often higher than 90% for each substratum class, even at the most detailed level of the substratum classification and AUC values also indicated excellent performance (0.8-1). Total agreement between classifiers was high at the broadest level of classification (75-80%) when differentiating between hard and soft substratum. However, this sharply declined as the number of substratum categories increased (19-45%) including a mix of rock, gravel, pebbles, and sand. The model ensemble, produced from the results of all three classifiers by majority voting, did not show any increase in predictive performance when compared to the single RF classifier. This study shows how a single classifier may be sufficient to produce benthic seabed maps and model ensembles of multiple classifiers.

  19. Estudo estereológico comparativo de complexos cumulus-ovócito aspirados de folículos durante o ciclo estral em bovinos Comparative stereological study of cumulus-oocyte complexes aspirated from follicles during the estrous cycle in bovine

    Directory of Open Access Journals (Sweden)

    A.M. Calado

    2005-08-01

    Full Text Available Realizou-se uma análise estereológica comparativa de complexos cumulus-ovócito (COCs de bovino da raça Holtein-Friesian aspirados de folículos antrais pequenos (com diâmetro de 1-4mm e médios (com diâmetro de 4-8mm durante as fases de metaestro, diestro e de proestro. Foram estimados o volume médio dos COCs, dos ovócitos (com e sem zona pelúcida, dos núcleos dos ovócitos e das células foliculares e seus respectivos núcleos. Estimou-se a espessura da zona pelúcida e calculou-se a percentagem relativa da freqüência dos diferentes tipos de células foliculares encontradas no cumulus. Os folículos pequenos apresentaram crescimento acelerado e sem sincronia entre o volume do citoplasma e o do núcleo. No folículo médio ocorreu expansão harmoniosa núcleo-citoplasmática. Identificaram-se três populações de células foliculares (C1, C2 e C3, cuja distribuição na massa do cumulus é independente de sua posição relativamente ao ovócito. Durante o ciclo estral, as células C1 foram progressivamente substituídas por C2 e estas, por C3.A comparative stereological analysis was performed in cumulus-oocyte complexes from Holstein-Friesian cows, aspirated from small (with diameter of 1-4mm and medium (with diameter of 4-8mm antral follicles during metestrous, diestrous and proestrous. The mean volumes of COCs, oocytes (with and without zona pellucida, nucleus of the oocyte, as well as the volumes of the follicular cells and their nucleus were estimated. The mean thickness of the zona pellucida and the relative percentage of the three follicular cell types in the cumulus mass were also obtained. Small antral follicles had an accelerate growth without synchrony between the volume of the oocyte and the respective nucleus, while in medium antral follicles an harmonious nucleus-cytoplasmic expansion was observed. These follicular cell populations were classified in their types, C1, C2 and C3, which the distribution in the cumulus mass

  20. Multi-Wheat-Model Ensemble Responses to Interannual Climate Variability

    Science.gov (United States)

    Ruane, Alex C.; Hudson, Nicholas I.; Asseng, Senthold; Camarrano, Davide; Ewert, Frank; Martre, Pierre; Boote, Kenneth J.; Thorburn, Peter J.; Aggarwal, Pramod K.; Angulo, Carlos

    2016-01-01

    We compare 27 wheat models' yield responses to interannual climate variability, analyzed at locations in Argentina, Australia, India, and The Netherlands as part of the Agricultural Model Intercomparison and Improvement Project (AgMIP) Wheat Pilot. Each model simulated 1981e2010 grain yield, and we evaluate results against the interannual variability of growing season temperature, precipitation, and solar radiation. The amount of information used for calibration has only a minor effect on most models' climate response, and even small multi-model ensembles prove beneficial. Wheat model clusters reveal common characteristics of yield response to climate; however models rarely share the same cluster at all four sites indicating substantial independence. Only a weak relationship (R2 0.24) was found between the models' sensitivities to interannual temperature variability and their response to long-termwarming, suggesting that additional processes differentiate climate change impacts from observed climate variability analogs and motivating continuing analysis and model development efforts.

  1. Crop Model Improvement Reduces the Uncertainty of the Response to Temperature of Multi-Model Ensembles

    Science.gov (United States)

    Maiorano, Andrea; Martre, Pierre; Asseng, Senthold; Ewert, Frank; Mueller, Christoph; Roetter, Reimund P.; Ruane, Alex C.; Semenov, Mikhail A.; Wallach, Daniel; Wang, Enli

    2016-01-01

    To improve climate change impact estimates and to quantify their uncertainty, multi-model ensembles (MMEs) have been suggested. Model improvements can improve the accuracy of simulations and reduce the uncertainty of climate change impact assessments. Furthermore, they can reduce the number of models needed in a MME. Herein, 15 wheat growth models of a larger MME were improved through re-parameterization and/or incorporating or modifying heat stress effects on phenology, leaf growth and senescence, biomass growth, and grain number and size using detailed field experimental data from the USDA Hot Serial Cereal experiment (calibration data set). Simulation results from before and after model improvement were then evaluated with independent field experiments from a CIMMYT worldwide field trial network (evaluation data set). Model improvements decreased the variation (10th to 90th model ensemble percentile range) of grain yields simulated by the MME on average by 39% in the calibration data set and by 26% in the independent evaluation data set for crops grown in mean seasonal temperatures greater than 24 C. MME mean squared error in simulating grain yield decreased by 37%. A reduction in MME uncertainty range by 27% increased MME prediction skills by 47%. Results suggest that the mean level of variation observed in field experiments and used as a benchmark can be reached with half the number of models in the MME. Improving crop models is therefore important to increase the certainty of model-based impact assessments and allow more practical, i.e. smaller MMEs to be used effectively.

  2. Constraining a compositional flow model with flow-chemical data using an ensemble-based Kalman filter

    KAUST Repository

    Gharamti, M. E.; Kadoura, A.; Valstar, J.; Sun, S.; Hoteit, Ibrahim

    2014-01-01

    Isothermal compositional flow models require coupling transient compressible flows and advective transport systems of various chemical species in subsurface porous media. Building such numerical models is quite challenging and may be subject to many sources of uncertainties because of possible incomplete representation of some geological parameters that characterize the system's processes. Advanced data assimilation methods, such as the ensemble Kalman filter (EnKF), can be used to calibrate these models by incorporating available data. In this work, we consider the problem of estimating reservoir permeability using information about phase pressure as well as the chemical properties of fluid components. We carry out state-parameter estimation experiments using joint and dual updating schemes in the context of the EnKF with a two-dimensional single-phase compositional flow model (CFM). Quantitative and statistical analyses are performed to evaluate and compare the performance of the assimilation schemes. Our results indicate that including chemical composition data significantly enhances the accuracy of the permeability estimates. In addition, composition data provide more information to estimate system states and parameters than do standard pressure data. The dual state-parameter estimation scheme provides about 10% more accurate permeability estimates on average than the joint scheme when implemented with the same ensemble members, at the cost of twice more forward model integrations. At similar computational cost, the dual approach becomes only beneficial after using large enough ensembles.

  3. Constraining a compositional flow model with flow-chemical data using an ensemble-based Kalman filter

    KAUST Repository

    Gharamti, M. E.

    2014-03-01

    Isothermal compositional flow models require coupling transient compressible flows and advective transport systems of various chemical species in subsurface porous media. Building such numerical models is quite challenging and may be subject to many sources of uncertainties because of possible incomplete representation of some geological parameters that characterize the system\\'s processes. Advanced data assimilation methods, such as the ensemble Kalman filter (EnKF), can be used to calibrate these models by incorporating available data. In this work, we consider the problem of estimating reservoir permeability using information about phase pressure as well as the chemical properties of fluid components. We carry out state-parameter estimation experiments using joint and dual updating schemes in the context of the EnKF with a two-dimensional single-phase compositional flow model (CFM). Quantitative and statistical analyses are performed to evaluate and compare the performance of the assimilation schemes. Our results indicate that including chemical composition data significantly enhances the accuracy of the permeability estimates. In addition, composition data provide more information to estimate system states and parameters than do standard pressure data. The dual state-parameter estimation scheme provides about 10% more accurate permeability estimates on average than the joint scheme when implemented with the same ensemble members, at the cost of twice more forward model integrations. At similar computational cost, the dual approach becomes only beneficial after using large enough ensembles.

  4. Deriving user-informed climate information from climate model ensemble results

    Science.gov (United States)

    Huebener, Heike; Hoffmann, Peter; Keuler, Klaus; Pfeifer, Susanne; Ramthun, Hans; Spekat, Arne; Steger, Christian; Warrach-Sagi, Kirsten

    2017-07-01

    Communication between providers and users of climate model simulation results still needs to be improved. In the German regional climate modeling project ReKliEs-De a midterm user workshop was conducted to allow the intended users of the project results to assess the preliminary results and to streamline the final project results to their needs. The user feedback highlighted, in particular, the still considerable gap between climate research output and user-tailored input for climate impact research. Two major requests from the user community addressed the selection of sub-ensembles and some condensed, easy to understand information on the strengths and weaknesses of the climate models involved in the project.

  5. LGM permafrost distribution: how well can the latest PMIP multi-model ensembles reconstruct?

    OpenAIRE

    K. Saito; T. Sueyoshi; S. Marchenko; V. Romanovsky; B. Otto-Bliesner; J. Walsh; N. Bigelow; A. Hendricks; K. Yoshikawa

    2013-01-01

    Global-scale frozen ground distribution during the Last Glacial Maximum (LGM) was reconstructed using multi-model ensembles of global climate models, and then compared with evidence-based knowledge and earlier numerical results. Modeled soil temperatures, taken from Paleoclimate Modelling Intercomparison Project Phase III (PMIP3) simulations, were used to diagnose the subsurface thermal regime and determine underlying frozen ground types for the present-day (pre-industrial; 0 k) and the LGM (...

  6. A Bayesian posterior predictive framework for weighting ensemble regional climate models

    Directory of Open Access Journals (Sweden)

    Y. Fan

    2017-06-01

    Full Text Available We present a novel Bayesian statistical approach to computing model weights in climate change projection ensembles in order to create probabilistic projections. The weight of each climate model is obtained by weighting the current day observed data under the posterior distribution admitted under competing climate models. We use a linear model to describe the model output and observations. The approach accounts for uncertainty in model bias, trend and internal variability, including error in the observations used. Our framework is general, requires very little problem-specific input, and works well with default priors. We carry out cross-validation checks that confirm that the method produces the correct coverage.

  7. Bayesian energy landscape tilting: towards concordant models of molecular ensembles.

    Science.gov (United States)

    Beauchamp, Kyle A; Pande, Vijay S; Das, Rhiju

    2014-03-18

    Predicting biological structure has remained challenging for systems such as disordered proteins that take on myriad conformations. Hybrid simulation/experiment strategies have been undermined by difficulties in evaluating errors from computational model inaccuracies and data uncertainties. Building on recent proposals from maximum entropy theory and nonequilibrium thermodynamics, we address these issues through a Bayesian energy landscape tilting (BELT) scheme for computing Bayesian hyperensembles over conformational ensembles. BELT uses Markov chain Monte Carlo to directly sample maximum-entropy conformational ensembles consistent with a set of input experimental observables. To test this framework, we apply BELT to model trialanine, starting from disagreeing simulations with the force fields ff96, ff99, ff99sbnmr-ildn, CHARMM27, and OPLS-AA. BELT incorporation of limited chemical shift and (3)J measurements gives convergent values of the peptide's α, β, and PPII conformational populations in all cases. As a test of predictive power, all five BELT hyperensembles recover set-aside measurements not used in the fitting and report accurate errors, even when starting from highly inaccurate simulations. BELT's principled framework thus enables practical predictions for complex biomolecular systems from discordant simulations and sparse data. Copyright © 2014 Biophysical Society. Published by Elsevier Inc. All rights reserved.

  8. Ensemble Prediction Model with Expert Selection for Electricity Price Forecasting

    Directory of Open Access Journals (Sweden)

    Bijay Neupane

    2017-01-01

    Full Text Available Forecasting of electricity prices is important in deregulated electricity markets for all of the stakeholders: energy wholesalers, traders, retailers and consumers. Electricity price forecasting is an inherently difficult problem due to its special characteristic of dynamicity and non-stationarity. In this paper, we present a robust price forecasting mechanism that shows resilience towards the aggregate demand response effect and provides highly accurate forecasted electricity prices to the stakeholders in a dynamic environment. We employ an ensemble prediction model in which a group of different algorithms participates in forecasting 1-h ahead the price for each hour of a day. We propose two different strategies, namely, the Fixed Weight Method (FWM and the Varying Weight Method (VWM, for selecting each hour’s expert algorithm from the set of participating algorithms. In addition, we utilize a carefully engineered set of features selected from a pool of features extracted from the past electricity price data, weather data and calendar data. The proposed ensemble model offers better results than the Autoregressive Integrated Moving Average (ARIMA method, the Pattern Sequence-based Forecasting (PSF method and our previous work using Artificial Neural Networks (ANN alone on the datasets for New York, Australian and Spanish electricity markets.

  9. Multi-model ensemble hydrological simulation using a BP Neural Network for the upper Yalongjiang River Basin, China

    Science.gov (United States)

    Li, Zhanjie; Yu, Jingshan; Xu, Xinyi; Sun, Wenchao; Pang, Bo; Yue, Jiajia

    2018-06-01

    Hydrological models are important and effective tools for detecting complex hydrological processes. Different models have different strengths when capturing the various aspects of hydrological processes. Relying on a single model usually leads to simulation uncertainties. Ensemble approaches, based on multi-model hydrological simulations, can improve application performance over single models. In this study, the upper Yalongjiang River Basin was selected for a case study. Three commonly used hydrological models (SWAT, VIC, and BTOPMC) were selected and used for independent simulations with the same input and initial values. Then, the BP neural network method was employed to combine the results from the three models. The results show that the accuracy of BP ensemble simulation is better than that of the single models.

  10. Supplementary Material for: Compressing an Ensemble With Statistical Models: An Algorithm for Global 3D Spatio-Temporal Temperature

    KAUST Repository

    Castruccio, Stefano

    2016-01-01

    One of the main challenges when working with modern climate model ensembles is the increasingly larger size of the data produced, and the consequent difficulty in storing large amounts of spatio-temporally resolved information. Many compression algorithms can be used to mitigate this problem, but since they are designed to compress generic scientific datasets, they do not account for the nature of climate model output and they compress only individual simulations. In this work, we propose a different, statistics-based approach that explicitly accounts for the space-time dependence of the data for annual global three-dimensional temperature fields in an initial condition ensemble. The set of estimated parameters is small (compared to the data size) and can be regarded as a summary of the essential structure of the ensemble output; therefore, it can be used to instantaneously reproduce the temperature fields in an ensemble with a substantial saving in storage and time. The statistical model exploits the gridded geometry of the data and parallelization across processors. It is therefore computationally convenient and allows to fit a nontrivial model to a dataset of 1 billion data points with a covariance matrix comprising of 1018 entries. Supplementary materials for this article are available online.

  11. One-day-ahead streamflow forecasting via super-ensembles of several neural network architectures based on the Multi-Level Diversity Model

    Science.gov (United States)

    Brochero, Darwin; Hajji, Islem; Pina, Jasson; Plana, Queralt; Sylvain, Jean-Daniel; Vergeynst, Jenna; Anctil, Francois

    2015-04-01

    Theories about generalization error with ensembles are mainly based on the diversity concept, which promotes resorting to many members of different properties to support mutually agreeable decisions. Kuncheva (2004) proposed the Multi Level Diversity Model (MLDM) to promote diversity in model ensembles, combining different data subsets, input subsets, models, parameters, and including a combiner level in order to optimize the final ensemble. This work tests the hypothesis about the minimisation of the generalization error with ensembles of Neural Network (NN) structures. We used the MLDM to evaluate two different scenarios: (i) ensembles from a same NN architecture, and (ii) a super-ensemble built by a combination of sub-ensembles of many NN architectures. The time series used correspond to the 12 basins of the MOdel Parameter Estimation eXperiment (MOPEX) project that were used by Duan et al. (2006) and Vos (2013) as benchmark. Six architectures are evaluated: FeedForward NN (FFNN) trained with the Levenberg Marquardt algorithm (Hagan et al., 1996), FFNN trained with SCE (Duan et al., 1993), Recurrent NN trained with a complex method (Weins et al., 2008), Dynamic NARX NN (Leontaritis and Billings, 1985), Echo State Network (ESN), and leak integrator neuron (L-ESN) (Lukosevicius and Jaeger, 2009). Each architecture performs separately an Input Variable Selection (IVS) according to a forward stepwise selection (Anctil et al., 2009) using mean square error as objective function. Post-processing by Predictor Stepwise Selection (PSS) of the super-ensemble has been done following the method proposed by Brochero et al. (2011). IVS results showed that the lagged stream flow, lagged precipitation, and Standardized Precipitation Index (SPI) (McKee et al., 1993) were the most relevant variables. They were respectively selected as one of the firsts three selected variables in 66, 45, and 28 of the 72 scenarios. A relationship between aridity index (Arora, 2002) and NN

  12. LGM permafrost distribution: how well can the latest PMIP multi-model ensembles reconstruct?

    Science.gov (United States)

    Saito, K.; Sueyoshi, T.; Marchenko, S.; Romanovsky, V.; Otto-Bliesner, B.; Walsh, J.; Bigelow, N.; Hendricks, A.; Yoshikawa, K.

    2013-03-01

    Global-scale frozen ground distribution during the Last Glacial Maximum (LGM) was reconstructed using multi-model ensembles of global climate models, and then compared with evidence-based knowledge and earlier numerical results. Modeled soil temperatures, taken from Paleoclimate Modelling Intercomparison Project Phase III (PMIP3) simulations, were used to diagnose the subsurface thermal regime and determine underlying frozen ground types for the present-day (pre-industrial; 0 k) and the LGM (21 k). This direct method was then compared to the earlier indirect method, which categorizes the underlying frozen ground type from surface air temperature, applied to both the PMIP2 (phase II) and PMIP3 products. Both direct and indirect diagnoses for 0 k showed strong agreement with the present-day observation-based map, although the soil temperature ensemble showed a higher diversity among the models partly due to varying complexity of the implemented subsurface processes. The area of continuous permafrost estimated by the multi-model analysis was 25.6 million km2 for LGM, in contrast to 12.7 million km2 for the pre-industrial control, whereas seasonally, frozen ground increased from 22.5 million km2 to 32.6 million km2. These changes in area resulted mainly from a cooler climate at LGM, but other factors as well, such as the presence of huge land ice sheets and the consequent expansion of total land area due to sea-level change. LGM permafrost boundaries modeled by the PMIP3 ensemble-improved over those of the PMIP2 due to higher spatial resolutions and improved climatology-also compared better to previous knowledge derived from the geomorphological and geocryological evidences. Combinatorial applications of coupled climate models and detailed stand-alone physical-ecological models for the cold-region terrestrial, paleo-, and modern climates will advance our understanding of the functionality and variability of the frozen ground subsystem in the global eco-climate system.

  13. Ensemble Bayesian forecasting system Part I: Theory and algorithms

    Science.gov (United States)

    Herr, Henry D.; Krzysztofowicz, Roman

    2015-05-01

    The ensemble Bayesian forecasting system (EBFS), whose theory was published in 2001, is developed for the purpose of quantifying the total uncertainty about a discrete-time, continuous-state, non-stationary stochastic process such as a time series of stages, discharges, or volumes at a river gauge. The EBFS is built of three components: an input ensemble forecaster (IEF), which simulates the uncertainty associated with random inputs; a deterministic hydrologic model (of any complexity), which simulates physical processes within a river basin; and a hydrologic uncertainty processor (HUP), which simulates the hydrologic uncertainty (an aggregate of all uncertainties except input). It works as a Monte Carlo simulator: an ensemble of time series of inputs (e.g., precipitation amounts) generated by the IEF is transformed deterministically through a hydrologic model into an ensemble of time series of outputs, which is next transformed stochastically by the HUP into an ensemble of time series of predictands (e.g., river stages). Previous research indicated that in order to attain an acceptable sampling error, the ensemble size must be on the order of hundreds (for probabilistic river stage forecasts and probabilistic flood forecasts) or even thousands (for probabilistic stage transition forecasts). The computing time needed to run the hydrologic model this many times renders the straightforward simulations operationally infeasible. This motivates the development of the ensemble Bayesian forecasting system with randomization (EBFSR), which takes full advantage of the analytic meta-Gaussian HUP and generates multiple ensemble members after each run of the hydrologic model; this auxiliary randomization reduces the required size of the meteorological input ensemble and makes it operationally feasible to generate a Bayesian ensemble forecast of large size. Such a forecast quantifies the total uncertainty, is well calibrated against the prior (climatic) distribution of

  14. Insights in time dependent cross compartment sensitivities from ensemble simulations with the fully coupled subsurface-land surface-atmosphere model TerrSysMP

    Science.gov (United States)

    Schalge, Bernd; Rihani, Jehan; Haese, Barbara; Baroni, Gabriele; Erdal, Daniel; Haefliger, Vincent; Lange, Natascha; Neuweiler, Insa; Hendricks-Franssen, Harrie-Jan; Geppert, Gernot; Ament, Felix; Kollet, Stefan; Cirpka, Olaf; Saavedra, Pablo; Han, Xujun; Attinger, Sabine; Kunstmann, Harald; Vereecken, Harry; Simmer, Clemens

    2017-04-01

    Currently, an integrated approach to simulating the earth system is evolving where several compartment models are coupled to achieve the best possible physically consistent representation. We used the model TerrSysMP, which fully couples subsurface, land surface and atmosphere, in a synthetic study that mimicked the Neckar catchment in Southern Germany. A virtual reality run at a high resolution of 400m for the land surface and subsurface and 1.1km for the atmosphere was made. Ensemble runs at a lower resolution (800m for the land surface and subsurface) were also made. The ensemble was generated by varying soil and vegetation parameters and lateral atmospheric forcing among the different ensemble members in a systematic way. It was found that the ensemble runs deviated for some variables and some time periods largely from the virtual reality reference run (the reference run was not covered by the ensemble), which could be related to the different model resolutions. This was for example the case for river discharge in the summer. We also analyzed the spread of model states as function of time and found clear relations between the spread and the time of the year and weather conditions. For example, the ensemble spread of latent heat flux related to uncertain soil parameters was larger under dry soil conditions than under wet soil conditions. Another example is that the ensemble spread of atmospheric states was more influenced by uncertain soil and vegetation parameters under conditions of low air pressure gradients (in summer) than under conditions with larger air pressure gradients in winter. The analysis of the ensemble of fully coupled model simulations provided valuable insights in the dynamics of land-atmosphere feedbacks which we will further highlight in the presentation.

  15. Multi-model ensemble simulations of olive pollen distribution in Europe in 2014: current status and outlook

    Directory of Open Access Journals (Sweden)

    M. Sofiev

    2017-10-01

    Full Text Available The paper presents the first modelling experiment of the European-scale olive pollen dispersion, analyses the quality of the predictions, and outlines the research needs. A 6-model strong ensemble of Copernicus Atmospheric Monitoring Service (CAMS was run throughout the olive season of 2014, computing the olive pollen distribution. The simulations have been compared with observations in eight countries, which are members of the European Aeroallergen Network (EAN. Analysis was performed for individual models, the ensemble mean and median, and for a dynamically optimised combination of the ensemble members obtained via fusion of the model predictions with observations. The models, generally reproducing the olive season of 2014, showed noticeable deviations from both observations and each other. In particular, the season was reported to start too early by 8 days, but for some models the error mounted to almost 2 weeks. For the end of the season, the disagreement between the models and the observations varied from a nearly perfect match up to 2 weeks too late. A series of sensitivity studies carried out to understand the origin of the disagreements revealed the crucial role of ambient temperature and consistency of its representation by the meteorological models and heat-sum-based phenological model. In particular, a simple correction to the heat-sum threshold eliminated the shift of the start of the season but its validity in other years remains to be checked. The short-term features of the concentration time series were reproduced better, suggesting that the precipitation events and cold/warm spells, as well as the large-scale transport, were represented rather well. Ensemble averaging led to more robust results. The best skill scores were obtained with data fusion, which used the previous days' observations to identify the optimal weighting coefficients of the individual model forecasts. Such combinations were tested for the forecasting

  16. Ensemble-based Probabilistic Forecasting at Horns Rev

    DEFF Research Database (Denmark)

    Pinson, Pierre; Madsen, Henrik

    2009-01-01

    forecasting methodology. In a first stage, ensemble forecasts of meteorological variables are converted to power through a suitable power curve model. This modelemploys local polynomial regression, and is adoptively estimated with an orthogonal fitting method. The obtained ensemble forecasts of wind power...

  17. Universal critical wrapping probabilities in the canonical ensemble

    Directory of Open Access Journals (Sweden)

    Hao Hu

    2015-09-01

    Full Text Available Universal dimensionless quantities, such as Binder ratios and wrapping probabilities, play an important role in the study of critical phenomena. We study the finite-size scaling behavior of the wrapping probability for the Potts model in the random-cluster representation, under the constraint that the total number of occupied bonds is fixed, so that the canonical ensemble applies. We derive that, in the limit L→∞, the critical values of the wrapping probability are different from those of the unconstrained model, i.e. the model in the grand-canonical ensemble, but still universal, for systems with 2yt−d>0 where yt=1/ν is the thermal renormalization exponent and d is the spatial dimension. Similar modifications apply to other dimensionless quantities, such as Binder ratios. For systems with 2yt−d≤0, these quantities share same critical universal values in the two ensembles. It is also derived that new finite-size corrections are induced. These findings apply more generally to systems in the canonical ensemble, e.g. the dilute Potts model with a fixed total number of vacancies. Finally, we formulate an efficient cluster-type algorithm for the canonical ensemble, and confirm these predictions by extensive simulations.

  18. Regionalization of post-processed ensemble runoff forecasts

    Directory of Open Access Journals (Sweden)

    J. O. Skøien

    2016-05-01

    Full Text Available For many years, meteorological models have been run with perturbated initial conditions or parameters to produce ensemble forecasts that are used as a proxy of the uncertainty of the forecasts. However, the ensembles are usually both biased (the mean is systematically too high or too low, compared with the observed weather, and has dispersion errors (the ensemble variance indicates a too low or too high confidence in the forecast, compared with the observed weather. The ensembles are therefore commonly post-processed to correct for these shortcomings. Here we look at one of these techniques, referred to as Ensemble Model Output Statistics (EMOS (Gneiting et al., 2005. Originally, the post-processing parameters were identified as a fixed set of parameters for a region. The application of our work is the European Flood Awareness System (http://www.efas.eu, where a distributed model is run with meteorological ensembles as input. We are therefore dealing with a considerably larger data set than previous analyses. We also want to regionalize the parameters themselves for other locations than the calibration gauges. The post-processing parameters are therefore estimated for each calibration station, but with a spatial penalty for deviations from neighbouring stations, depending on the expected semivariance between the calibration catchment and these stations. The estimated post-processed parameters can then be used for regionalization of the postprocessing parameters also for uncalibrated locations using top-kriging in the rtop-package (Skøien et al., 2006, 2014. We will show results from cross-validation of the methodology and although our interest is mainly in identifying exceedance probabilities for certain return levels, we will also show how the rtop package can be used for creating a set of post-processed ensembles through simulations.

  19. On the proper use of Ensembles for Predictive Uncertainty assessment

    Science.gov (United States)

    Todini, Ezio; Coccia, Gabriele; Ortiz, Enrique

    2015-04-01

    Probabilistic forecasting has become popular in the last decades. Hydrological probabilistic forecasts have been based either on uncertainty processors (Krzysztofowic, 1999; Todini, 2004; Todini, 2008) or on ensembles, following meteorological traditional approaches and the establishment of the HEPEX program (http://hepex.irstea.fr. Unfortunately, the direct use of ensembles as a measure of the predictive density is an incorrect practice, because the ensemble measures the spread of the forecast instead of, following the definition of predictive uncertainty, the conditional probability of the future outcome conditional on the forecast. Only few correct approaches are reported in the literature, which correctly use the ensemble to estimate an expected conditional predictive density (Reggiani et al., 2009), similarly to what is done when several predictive models are available as in the BMA (Raftery et al., 2005) or MCP(Todini, 2008; Coccia and Todini, 2011) approaches. A major problem, limiting the correct use of ensembles, is in fact the difficulty of defining the time dependence of the ensemble members, due to the lack of a consistent ranking: in other words, when dealing with multiple models, the ith model remains the ith model regardless to the time of forecast, while this does not happen when dealing with ensemble members, since there is no definition for the ith member of an ensemble. Nonetheless, the MCP approach (Todini, 2008; Coccia and Todini, 2011), essentially based on a multiple regression in the Normal space, can be easily extended to use ensembles to represent the local (in time) smaller or larger conditional predictive uncertainty, as a function of the ensemble spread. This is done by modifying the classical linear regression equations, impliying perfectly observed predictors, to alternative regression equations similar to the Kalman filter ones, allowing for uncertain predictors. In this way, each prediction in time accounts for both the predictive

  20. A Comparison of Ensemble Kalman Filters for Storm Surge Assimilation

    KAUST Repository

    Altaf, Muhammad

    2014-08-01

    This study evaluates and compares the performances of several variants of the popular ensembleKalman filter for the assimilation of storm surge data with the advanced circulation (ADCIRC) model. Using meteorological data from Hurricane Ike to force the ADCIRC model on a domain including the Gulf ofMexico coastline, the authors implement and compare the standard stochastic ensembleKalman filter (EnKF) and three deterministic square root EnKFs: the singular evolutive interpolated Kalman (SEIK) filter, the ensemble transform Kalman filter (ETKF), and the ensemble adjustment Kalman filter (EAKF). Covariance inflation and localization are implemented in all of these filters. The results from twin experiments suggest that the square root ensemble filters could lead to very comparable performances with appropriate tuning of inflation and localization, suggesting that practical implementation details are at least as important as the choice of the square root ensemble filter itself. These filters also perform reasonably well with a relatively small ensemble size, whereas the stochastic EnKF requires larger ensemble sizes to provide similar accuracy for forecasts of storm surge.

  1. A Comparison of Ensemble Kalman Filters for Storm Surge Assimilation

    KAUST Repository

    Altaf, Muhammad; Butler, T.; Mayo, T.; Luo, X.; Dawson, C.; Heemink, A. W.; Hoteit, Ibrahim

    2014-01-01

    This study evaluates and compares the performances of several variants of the popular ensembleKalman filter for the assimilation of storm surge data with the advanced circulation (ADCIRC) model. Using meteorological data from Hurricane Ike to force the ADCIRC model on a domain including the Gulf ofMexico coastline, the authors implement and compare the standard stochastic ensembleKalman filter (EnKF) and three deterministic square root EnKFs: the singular evolutive interpolated Kalman (SEIK) filter, the ensemble transform Kalman filter (ETKF), and the ensemble adjustment Kalman filter (EAKF). Covariance inflation and localization are implemented in all of these filters. The results from twin experiments suggest that the square root ensemble filters could lead to very comparable performances with appropriate tuning of inflation and localization, suggesting that practical implementation details are at least as important as the choice of the square root ensemble filter itself. These filters also perform reasonably well with a relatively small ensemble size, whereas the stochastic EnKF requires larger ensemble sizes to provide similar accuracy for forecasts of storm surge.

  2. A WRF/Chem sensitivity study using ensemble modelling for a high ozone episode in Slovenia and the Northern Adriatic area

    Science.gov (United States)

    Žabkar, Rahela; Koračin, Darko; Rakovec, Jože

    2013-10-01

    A high ozone (O3) concentrations episode during a heat wave event in the Northeastern Mediterranean was investigated using the WRF/Chem model. To understand the major model uncertainties and errors as well as the impacts of model inputs on the model accuracy, an ensemble modelling experiment was conducted. The 51-member ensemble was designed by varying model physics parameterization options (PBL schemes with different surface layer and land-surface modules, and radiation schemes); chemical initial and boundary conditions; anthropogenic and biogenic emission inputs; and model domain setup and resolution. The main impacts of the geographical and emission characteristics of three distinct regions (suburban Mediterranean, continental urban, and continental rural) on the model accuracy and O3 predictions were investigated. In spite of the large ensemble set size, the model generally failed to simulate the extremes; however, as expected from probabilistic forecasting the ensemble spread improved results with respect to extremes compared to the reference run. Noticeable model nighttime overestimations at the Mediterranean and some urban and rural sites can be explained by too strong simulated winds, which reduce the impact of dry deposition and O3 titration in the near surface layers during the nighttime. Another possible explanation could be inaccuracies in the chemical mechanisms, which are suggested also by model insensitivity to variations in the nitrogen oxides (NOx) and volatile organic compounds (VOC) emissions. Major impact factors for underestimations of the daytime O3 maxima at the Mediterranean and some rural sites include overestimation of the PBL depths, a lack of information on forest fires, too strong surface winds, and also possible inaccuracies in biogenic emissions. This numerical experiment with the ensemble runs also provided guidance on an optimum model setup and input data.

  3. Interação entre células do cumulus e atividade da proteína quinase C em diferentes fases da maturação nuclear de oócitos bovinos Interaction between cumulus cells and the activity of protein kinase C at different stages of bovine oocyte nuclear maturation

    Directory of Open Access Journals (Sweden)

    A.C. Bertagnolli

    2004-08-01

    Full Text Available Verificou-se a influência da proteína quinase C (PK-C no reinício e na progressão da meiose em oócitos bovinos, determinando se as células do cumulus são mediadoras da PK-C na regulação da maturação dos oócitos. Complexos cumulus-oócitos (CCO e oócitos desnudos (OD, distribuídos aleatoriamente em seis tratamentos (T com base na presença de um ativador da PK-C (PMA (T1 e T2, de um forbol éster incapaz de ativar a PK-C (4alfa-PDD-controle (T3 e T4 ou de apenas o meio básico (TCM-199-controle (T5 e T6, foram cultivados por 7, 9, 12, 18 e 22 horas. A percentagem de rompimento da vesícula germinativa no grupo cultivado com PMA foi maior do que nos dois grupos controle, com e sem células do cumulus. O cultivo de CCO e OD por 12 e 18 horas demonstrou que a PK-C influencia a progressão para os estádios de metáfase I (MI e metáfase II (MII de maneira dependente das células do cumulus. Nos períodos de 9 e 22 horas, não foi possível observar diferença entre os grupos quanto aos diferentes estádios de maturação. A ativação da PK-C acelera o reinício da meiose independentemente das células somáticas e acelera a progressão até os estádios de MI e MII na dependência das células do cumulus.The aim of this study was to evaluate the effect of protein kinase C (PK-C on the meiotic resumption and progression in bovine oocyte, and to determine if the cumulus cells mediate the PK-C action in the regulation of bovine oocyte nuclear maturation. Cumulus-oocyte complexes (COC and denuded oocytes (DO, randomly allotted to 6 treatments (T based on the presence of an activator of PK-C (PMA (T1 and T2, or a phorbol ester unable to activate PK-C (4alphaPDD-control (T3 and T4 or a basic culture medium (T5 and T6, were cultivated for 7, 9, 12, 18 and 22 hours. The percentage of germinal vesicle breakdown (GVBD was higher when the oocytes were cultured with PMA than in the control groups with and without cumulus cells. However, PK-C was

  4. Ensemble of cell survival experiments after ion irradiation for validation of RBE models

    Energy Technology Data Exchange (ETDEWEB)

    Friedrich, Thomas; Scholz, Uwe; Scholz, Michael [GSI Helmholtzzentrum fuer Schwerionenforschung, Darmstadt (Germany); Durante, Marco [GSI Helmholtzzentrum fuer Schwerionenforschung, Darmstadt (Germany); Institut fuer Festkoerperphysik, TU Darmstadt, Darmstadt (Germany)

    2012-07-01

    There is persistent interest in understanding the systematics of the relative biological effectiveness (RBE). Models such as the Local Effect Model (LEM) or the Microdosimetric Kinetic Model have the goal to predict the RBE. For the validation of these models a collection of many in-vitro cell survival experiments is most appropriate. The set-up of an ensemble of in-vitro cell survival data comprising about 850 survival experiments after both ion and photon irradiation is reported. The survival curves have been taken out from publications. The experiments encompass survival curves obtained in different labs, using different ion species from protons to uranium, varying irradiation modalities (shaped or monoenergetic beam), various energies and linear energy transfers, and a whole variety of cell types (human or rodent; normal, mutagenic or tumor; radioresistant or -sensitive). Each cell survival curve has been parameterized by the linear-quadratic model. The photon parameters have been added to the data base to allow to calculate the experimental RBE to any survival level. We report on experimental trends found within the data ensemble. The data will serve as a testing ground for RBE models such as the LEM. Finally, a roadmap for further validation and first model results using the data base in combination with the LEM are presented.

  5. Ensemble dispersion forecasting - Part 2. Application and evaluation

    DEFF Research Database (Denmark)

    Galmarini, S.; Bianconi, R.; Addis, R.

    2004-01-01

    of the dispersion of ETEX release 1 and the model ensemble is compared with the monitoring data. The scope of the comparison is to estimate to what extent the ensemble analysis is an improvement with respect to the single model results and represents a superior analysis of the process evolution. (C) 2004 Elsevier...

  6. Components of Cigarette Smoke Inhibit Expansion of Oocyte-Cumulus Comlexes from Porcine Follicles

    Czech Academy of Sciences Publication Activity Database

    Vršanská, S.; Nagyová, Eva; Mlynarčíková, A.; Ficková, M.; Kolena, J.

    2003-01-01

    Roč. 52, č. 3 (2003), s. 383-387 ISSN 0862-8408 R&D Projects: GA AV ČR IAA5045102 Institutional research plan: CEZ:AV0Z5045916 Keywords : porcine ovary * cigarette alkaloids * cumulus expansion Subject RIV: ED - Physiology Impact factor: 0.939, year: 2003

  7. Ensemble methods for seasonal limited area forecasts

    DEFF Research Database (Denmark)

    Arritt, Raymond W.; Anderson, Christopher J.; Takle, Eugene S.

    2004-01-01

    The ensemble prediction methods used for seasonal limited area forecasts were examined by comparing methods for generating ensemble simulations of seasonal precipitation. The summer 1993 model over the north-central US was used as a test case. The four methods examined included the lagged-average...

  8. Enhancement of Bovine oocyte maturation by leptin is accompanied by an upregulation in mRNA expression of leptin receptor isoforms in cumulus cells

    NARCIS (Netherlands)

    van Tol, Helena T A; van Eerdenburg, Frank J C M; Colenbrander, Ben; Roelen, Bernard A J

    In this study, the mechanisms of supposed leptin action on oocyte maturation were examined. Expression of leptin mRNA, as determined with RT-PCR, was present in oocytes but not in cumulus cells. The long isoform of the leptin receptor (ObR-L) was expressed exclusively in cumulus cells after 7 and 23

  9. Spatio-temporal behaviour of medium-range ensemble forecasts

    Science.gov (United States)

    Kipling, Zak; Primo, Cristina; Charlton-Perez, Andrew

    2010-05-01

    Using the recently-developed mean-variance of logarithms (MVL) diagram, together with the TIGGE archive of medium-range ensemble forecasts from nine different centres, we present an analysis of the spatio-temporal dynamics of their perturbations, and show how the differences between models and perturbation techniques can explain the shape of their characteristic MVL curves. We also consider the use of the MVL diagram to compare the growth of perturbations within the ensemble with the growth of the forecast error, showing that there is a much closer correspondence for some models than others. We conclude by looking at how the MVL technique might assist in selecting models for inclusion in a multi-model ensemble, and suggest an experiment to test its potential in this context.

  10. The presence of acylated ghrelin during in vitro maturation of bovine oocytes induces cumulus cell DNA damage and apoptosis, and impairs early embryo development.

    Science.gov (United States)

    Sirini, Matias A; Anchordoquy, Juan Mateo; Anchordoquy, Juan Patricio; Pascua, Ana M; Nikoloff, Noelia; Carranza, Ana; Relling, Alejandro E; Furnus, Cecilia C

    2017-10-01

    The aim of this study was to investigate the effects of acylated ghrelin supplementation during in vitro maturation (IVM) of bovine oocytes. IVM medium was supplemented with 20, 40 or 60 pM acylated ghrelin concentrations. Cumulus expansion area and oocyte nuclear maturation were studied as maturation parameters. Cumulus-oocyte complexes (COC) were assessed with the comet, apoptosis and viability assays. The in vitro effects of acylated ghrelin on embryo developmental capacity and embryo quality were also evaluated. Results demonstrated that acylated ghrelin did not affect oocyte nuclear maturation and cumulus expansion area. However, it induced cumulus cell (CC) death, apoptosis and DNA damage. The damage increased as a function of the concentration employed. Additionally, the percentages of blastocyst yield, hatching and embryo quality decreased with all acylated ghrelin concentrations tested. Our study highlights the importance of acylated ghrelin in bovine reproduction, suggesting that this metabolic hormone could function as a signal that prevents the progress to reproductive processes.

  11. On Ensemble Nonlinear Kalman Filtering with Symmetric Analysis Ensembles

    KAUST Repository

    Luo, Xiaodong; Hoteit, Ibrahim; Moroz, Irene M.

    2010-01-01

    However, by adopting the Monte Carlo method, the EnSRF also incurs certain sampling errors. One way to alleviate this problem is to introduce certain symmetry to the ensembles, which can reduce the sampling errors and spurious modes in evaluation of the means and covariances of the ensembles [7]. In this contribution, we present two methods to produce symmetric ensembles. One is based on the unscented transform [8, 9], which leads to the unscented Kalman filter (UKF) [8, 9] and its variant, the ensemble unscented Kalman filter (EnUKF) [7]. The other is based on Stirling’s interpolation formula (SIF), which results in the divided difference filter (DDF) [10]. Here we propose a simplified divided difference filter (sDDF) in the context of ensemble filtering. The similarity and difference between the sDDF and the EnUKF will be discussed. Numerical experiments will also be conducted to investigate the performance of the sDDF and the EnUKF, and compare them to a well‐established EnSRF, the ensemble transform Kalman filter (ETKF) [2].

  12. Global Ensemble Forecast System (GEFS) [2.5 Deg.

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — The Global Ensemble Forecast System (GEFS) is a weather forecast model made up of 21 separate forecasts, or ensemble members. The National Centers for Environmental...

  13. The Route to Raindrop Formation in a Shallow Cumulus Cloud Simulated by a Lagrangian Cloud Model

    Science.gov (United States)

    Noh, Yign; Hoffmann, Fabian; Raasch, Siegfried

    2017-11-01

    The mechanism of raindrop formation in a shallow cumulus cloud is investigated using a Lagrangian cloud model (LCM). The analysis is focused on how and under which conditions a cloud droplet grows to a raindrop by tracking the history of individual Lagrangian droplets. It is found that the rapid collisional growth, leading to raindrop formation, is triggered when single droplets with a radius of 20 μm appear in the region near the cloud top, characterized by a large liquid water content, strong turbulence, large mean droplet size, a broad drop size distribution (DSD), and high supersaturations. Raindrop formation easily occurs when turbulence-induced collision enhancement(TICE) is considered, with or without any extra broadening of the DSD by another mechanism (such as entrainment and mixing). In contrast, when TICE is not considered, raindrop formation is severely delayed if no other broadening mechanism is active. The reason leading to the difference is clarified by the additional analysis of idealized box-simulations of the collisional growth process for different DSDs in varied turbulent environments. It is found that TICE does not accelerate the timing of the raindrop formation for individual droplets, but it enhances the collisional growth rate significantly afterward. KMA R & D Program (Korea), DFG (Germany).

  14. An ensemble classifier to predict track geometry degradation

    International Nuclear Information System (INIS)

    Cárdenas-Gallo, Iván; Sarmiento, Carlos A.; Morales, Gilberto A.; Bolivar, Manuel A.; Akhavan-Tabatabaei, Raha

    2017-01-01

    Railway operations are inherently complex and source of several problems. In particular, track geometry defects are one of the leading causes of train accidents in the United States. This paper presents a solution approach which entails the construction of an ensemble classifier to forecast the degradation of track geometry. Our classifier is constructed by solving the problem from three different perspectives: deterioration, regression and classification. We considered a different model from each perspective and our results show that using an ensemble method improves the predictive performance. - Highlights: • We present an ensemble classifier to forecast the degradation of track geometry. • Our classifier considers three perspectives: deterioration, regression and classification. • We construct and test three models and our results show that using an ensemble method improves the predictive performance.

  15. A novel least squares support vector machine ensemble model for NOx emission prediction of a coal-fired boiler

    International Nuclear Information System (INIS)

    Lv, You; Liu, Jizhen; Yang, Tingting; Zeng, Deliang

    2013-01-01

    Real operation data of power plants are inclined to be concentrated in some local areas because of the operators’ habits and control system design. In this paper, a novel least squares support vector machine (LSSVM)-based ensemble learning paradigm is proposed to predict NO x emission of a coal-fired boiler using real operation data. In view of the plant data characteristics, a soft fuzzy c-means cluster algorithm is proposed to decompose the original data and guarantee the diversity of individual learners. Subsequently the base LSSVM is trained in each individual subset to solve the subtask. Finally, partial least squares (PLS) is applied as the combination strategy to eliminate the collinear and redundant information of the base learners. Considering that the fuzzy membership also has an effect on the ensemble output, the membership degree is added as one of the variables of the combiner. The single LSSVM and other ensemble models using different decomposition and combination strategies are also established to make a comparison. The result shows that the new soft FCM-LSSVM-PLS ensemble method can predict NO x emission accurately. Besides, because of the divide and conquer frame, the total time consumed in the searching the parameters and training also decreases evidently. - Highlights: • A novel LSSVM ensemble model to predict NO x emissions is presented. • LSSVM is used as the base learner and PLS is employed as the combiner. • The model is applied to process data from a 660 MW coal-fired boiler. • The generalization ability of the model is enhanced. • The time consuming in training and searching the parameters decreases sharply

  16. REAL - Ensemble radar precipitation estimation for hydrology in a mountainous region

    OpenAIRE

    Germann, Urs; Berenguer Ferrer, Marc; Sempere Torres, Daniel; Zappa, Massimiliano

    2009-01-01

    An elegant solution to characterise the residual errors in radar precipitation estimates is to generate an ensemble of precipitation fields. The paper proposes a radar ensemble generator designed for usage in the Alps using LU decomposition (REAL), and presents first results from a real-time implementation coupling the radar ensemble with a semi-distributed rainfall–runoff model for flash flood modelling in a steep Alpine catchment. Each member of the radar ensemble is a possible realisati...

  17. Effect of Cumulus cell co-culture and Protein Supplement on Success of in vitro Fertilization and Development of Pre-implanted Embryos in mice

    Directory of Open Access Journals (Sweden)

    Muhammad-Baqir M-R. Fakhrildin

    2005-06-01

    Full Text Available Successful oocyte fertilization and normal embryonic development of mice were considered the most important diagnostic criteria for the safety of materials and tools used for human in vitro fertilization and embryo transfer (IVF-ET. Therefore, we studied the influence of cumulus cells co-culture and protein supplement within culture medium on percentages of in vitro fertilization (IVF and normal development of early stages of mouse embryo later. Oocytes were collected and treated with hyaluronidase to remove cumulus cells. Oocytes were divided into four groups namely: Group-1: Oocytes incubated within modified Earl’s medium (MEM supplied with 10% inactivated bovine amniotic fluid as a protein source and cumulus cells; Group-2: Oocytes incubated with MEM supplied with cumulus cells only; Group-3: Oocytes incubated with MEM supplied with 10% inactivated bovine amniotic fluid only; and Group-4: Oocytes  incubated with MEM free of both protein source and cumulus cells. For IVF, 5-6 oocytes were incubated with active spermatozoa under paraffin oil for 18-20 hours at 37° oC in 5% CO2. Percentages of IVF and embryonic development were then recorded. Best results for IVF and normal embryonic development were achieved from oocytes of Group-1 when compared to the other groups. As compared to Group-1, the percentage of IVF for Group-2 and Group-3 were decreased insignificantly and significantly (P<0.002, respectively. Significant (P<0.01 reduction in the percentages of IVF and normal embryonic development were reported in Group-4 as compared to Group-1. Therefore, it was concluded that the presence of cumulus cells co-culture and bovine amniotic fluid as a protein source within culture medium may have an important role on the fertilizing capacity of spermatozoa and oocytes and normal development of pre-implanted mouse embryo later.

  18. Short ensembles: an efficient method for discerning climate-relevant sensitivities in atmospheric general circulation models

    Directory of Open Access Journals (Sweden)

    H. Wan

    2014-09-01

    Full Text Available This paper explores the feasibility of an experimentation strategy for investigating sensitivities in fast components of atmospheric general circulation models. The basic idea is to replace the traditional serial-in-time long-term climate integrations by representative ensembles of shorter simulations. The key advantage of the proposed method lies in its efficiency: since fewer days of simulation are needed, the computational cost is less, and because individual realizations are independent and can be integrated simultaneously, the new dimension of parallelism can dramatically reduce the turnaround time in benchmark tests, sensitivities studies, and model tuning exercises. The strategy is not appropriate for exploring sensitivity of all model features, but it is very effective in many situations. Two examples are presented using the Community Atmosphere Model, version 5. In the first example, the method is used to characterize sensitivities of the simulated clouds to time-step length. Results show that 3-day ensembles of 20 to 50 members are sufficient to reproduce the main signals revealed by traditional 5-year simulations. A nudging technique is applied to an additional set of simulations to help understand the contribution of physics–dynamics interaction to the detected time-step sensitivity. In the second example, multiple empirical parameters related to cloud microphysics and aerosol life cycle are perturbed simultaneously in order to find out which parameters have the largest impact on the simulated global mean top-of-atmosphere radiation balance. It turns out that 12-member ensembles of 10-day simulations are able to reveal the same sensitivities as seen in 4-year simulations performed in a previous study. In both cases, the ensemble method reduces the total computational time by a factor of about 15, and the turnaround time by a factor of several hundred. The efficiency of the method makes it particularly useful for the development of

  19. INFLUÊNCIA DA TEMPERATURA DE FECUNDAÇÃO IN VITRO E DAS CÉLULAS DO Cumulus oophorus SOBRE A TAXA DE POLISPERMIA E DESENVOLVIMENTO EMBRIONÁRIO

    Directory of Open Access Journals (Sweden)

    Melissa Savoia Castilho Cunha

    2010-06-01

    Full Text Available Effects of in vitro fertilization (IVF temperature andcumulus oophorus cells removal after IVF or 12 h of embryoculture (IVC on polyspermy and embryo development rates wereevaluated in swine. Oocytes and spermatozoa were incubated at37 or 38.5ºC during IVF procedure. Cumulus oophorus cells wereremoved from 50% of zygotes of each group 8 hours after IVF andall zygotes were cultured with NCSU23 media. Polyspermy rateswere assessed after 12 hours of IVC, when cumulus oophorus cellswere removed from the rest of zygotes. In a second experiment,embryos remained in culture for the evaluation of embryodevelopment. No effects of IVF temperature or cumulus oophoruscells removal were observed after 12 hours of IVC on polyspermyand embryo development (p<0.05. In conclusion, IVF temperatureand the presence of cumulus oophorus cells after IVF do notinterfere on polyspermy and embryo development rates.

  20. Exploiting conformational ensembles in modeling protein-protein interactions on the proteome scale

    Science.gov (United States)

    Kuzu, Guray; Gursoy, Attila; Nussinov, Ruth; Keskin, Ozlem

    2013-01-01

    Cellular functions are performed through protein-protein interactions; therefore, identification of these interactions is crucial for understanding biological processes. Recent studies suggest that knowledge-based approaches are more useful than ‘blind’ docking for modeling at large scales. However, a caveat of knowledge-based approaches is that they treat molecules as rigid structures. The Protein Data Bank (PDB) offers a wealth of conformations. Here, we exploited ensemble of the conformations in predictions by a knowledge-based method, PRISM. We tested ‘difficult’ cases in a docking-benchmark dataset, where the unbound and bound protein forms are structurally different. Considering alternative conformations for each protein, the percentage of successfully predicted interactions increased from ~26% to 66%, and 57% of the interactions were successfully predicted in an ‘unbiased’ scenario, in which data related to the bound forms were not utilized. If the appropriate conformation, or relevant template interface, is unavailable in the PDB, PRISM could not predict the interaction successfully. The pace of the growth of the PDB promises a rapid increase of ensemble conformations emphasizing the merit of such knowledge-based ensemble strategies for higher success rates in protein-protein interaction predictions on an interactome-scale. We constructed the structural network of ERK interacting proteins as a case study. PMID:23590674

  1. Modeling of steam generator in nuclear power plant using neural network ensemble

    International Nuclear Information System (INIS)

    Lee, S. K.; Lee, E. C.; Jang, J. W.

    2003-01-01

    Neural network is now being used in modeling the steam generator is known to be difficult due to the reverse dynamics. However, Neural network is prone to the problem of overfitting. This paper investigates the use of neural network combining methods to model steam generator water level and compares with single neural network. The results show that neural network ensemble is effective tool which can offer improved generalization, lower dependence of the training set and reduced training time

  2. An artificially induced follicle stimulating hormone surge at the time of human chorionic gonadotrophin administration in controlled ovarian stimulation cycles has no effect on cumulus expansion, fertilization rate, embryo quality and implantation rate

    NARCIS (Netherlands)

    Vermeiden, J. P.; Roseboom, T. J.; Goverde, A. J.; Suchartwatnachai, C.; Schoute, E.; Braat, D. D.; Schats, R.

    1997-01-01

    In the spontaneous menstrual cycle, the mid-cycle gonadotrophin surge causes maturation of the cumulus-oocyte complex, mucification of cumulus cells and expansion of the cumulus oophorus, resumption of meiosis and maturation of the cytoplasm of the oocyte. Whether this is an effect purely of

  3. LGM permafrost distribution: how well can the latest PMIP multi-model ensembles perform reconstruction?

    OpenAIRE

    Saito, K.; Sueyoshi, T.; Marchenko, S.; Romanovsky, V.; Otto-Bliesner, B.; Walsh, J.; Bigelow, N.; Hendricks, A.; Yoshikawa, K.

    2013-01-01

    Here, global-scale frozen ground distribution from the Last Glacial Maximum (LGM) has been reconstructed using multi-model ensembles of global climate models, and then compared with evidence-based knowledge and earlier numerical results. Modeled soil temperatures, taken from Paleoclimate Modelling Intercomparison Project phase III (PMIP3) simulations, were used to diagnose the subsurface thermal regime and determine underlying frozen ground types for the present day (pre-industrial; 0 kya) an...

  4. Ensemble downscaling in coupled solar wind-magnetosphere modeling for space weather forecasting.

    Science.gov (United States)

    Owens, M J; Horbury, T S; Wicks, R T; McGregor, S L; Savani, N P; Xiong, M

    2014-06-01

    Advanced forecasting of space weather requires simulation of the whole Sun-to-Earth system, which necessitates driving magnetospheric models with the outputs from solar wind models. This presents a fundamental difficulty, as the magnetosphere is sensitive to both large-scale solar wind structures, which can be captured by solar wind models, and small-scale solar wind "noise," which is far below typical solar wind model resolution and results primarily from stochastic processes. Following similar approaches in terrestrial climate modeling, we propose statistical "downscaling" of solar wind model results prior to their use as input to a magnetospheric model. As magnetospheric response can be highly nonlinear, this is preferable to downscaling the results of magnetospheric modeling. To demonstrate the benefit of this approach, we first approximate solar wind model output by smoothing solar wind observations with an 8 h filter, then add small-scale structure back in through the addition of random noise with the observed spectral characteristics. Here we use a very simple parameterization of noise based upon the observed probability distribution functions of solar wind parameters, but more sophisticated methods will be developed in the future. An ensemble of results from the simple downscaling scheme are tested using a model-independent method and shown to add value to the magnetospheric forecast, both improving the best estimate and quantifying the uncertainty. We suggest a number of features desirable in an operational solar wind downscaling scheme. Solar wind models must be downscaled in order to drive magnetospheric models Ensemble downscaling is more effective than deterministic downscaling The magnetosphere responds nonlinearly to small-scale solar wind fluctuations.

  5. Assessing the impact of land use change on hydrology by ensemble modeling (LUCHEM). I: Model intercomparison with current land use

    Science.gov (United States)

    Breuer, L.; Huisman, J.A.; Willems, P.; Bormann, H.; Bronstert, A.; Croke, B.F.W.; Frede, H.-G.; Graff, T.; Hubrechts, L.; Jakeman, A.J.; Kite, G.; Lanini, J.; Leavesley, G.; Lettenmaier, D.P.; Lindstrom, G.; Seibert, J.; Sivapalan, M.; Viney, N.R.

    2009-01-01

    This paper introduces the project on 'Assessing the impact of land use change on hydrology by ensemble modeling (LUCHEM)' that aims at investigating the envelope of predictions on changes in hydrological fluxes due to land use change. As part of a series of four papers, this paper outlines the motivation and setup of LUCHEM, and presents a model intercomparison for the present-day simulation results. Such an intercomparison provides a valuable basis to investigate the effects of different model structures on model predictions and paves the ground for the analysis of the performance of multi-model ensembles and the reliability of the scenario predictions in companion papers. In this study, we applied a set of 10 lumped, semi-lumped and fully distributed hydrological models that have been previously used in land use change studies to the low mountainous Dill catchment, Germany. Substantial differences in model performance were observed with Nash-Sutcliffe efficiencies ranging from 0.53 to 0.92. Differences in model performance were attributed to (1) model input data, (2) model calibration and (3) the physical basis of the models. The models were applied with two sets of input data: an original and a homogenized data set. This homogenization of precipitation, temperature and leaf area index was performed to reduce the variation between the models. Homogenization improved the comparability of model simulations and resulted in a reduced average bias, although some variation in model data input remained. The effect of the physical differences between models on the long-term water balance was mainly attributed to differences in how models represent evapotranspiration. Semi-lumped and lumped conceptual models slightly outperformed the fully distributed and physically based models. This was attributed to the automatic model calibration typically used for this type of models. Overall, however, we conclude that there was no superior model if several measures of model

  6. Land-total and Ocean-total Precipitation and Evaporation from a Community Atmosphere Model version 5 Perturbed Parameter Ensemble

    Energy Technology Data Exchange (ETDEWEB)

    Covey, Curt [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States); Lucas, Donald D. [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States); Trenberth, Kevin E. [National Center for Atmospheric Research, Boulder, CO (United States)

    2016-03-02

    This document presents the large scale water budget statistics of a perturbed input-parameter ensemble of atmospheric model runs. The model is Version 5.1.02 of the Community Atmosphere Model (CAM). These runs are the “C-Ensemble” described by Qian et al., “Parametric Sensitivity Analysis of Precipitation at Global and Local Scales in the Community Atmosphere Model CAM5” (Journal of Advances in Modeling the Earth System, 2015). As noted by Qian et al., the simulations are “AMIP type” with temperature and sea ice boundary conditions chosen to match surface observations for the five year period 2000-2004. There are 1100 ensemble members in addition to one run with default inputparameter values.

  7. Short ensembles: An Efficient Method for Discerning Climate-relevant Sensitivities in Atmospheric General Circulation Models

    Energy Technology Data Exchange (ETDEWEB)

    Wan, Hui; Rasch, Philip J.; Zhang, Kai; Qian, Yun; Yan, Huiping; Zhao, Chun

    2014-09-08

    This paper explores the feasibility of an experimentation strategy for investigating sensitivities in fast components of atmospheric general circulation models. The basic idea is to replace the traditional serial-in-time long-term climate integrations by representative ensembles of shorter simulations. The key advantage of the proposed method lies in its efficiency: since fewer days of simulation are needed, the computational cost is less, and because individual realizations are independent and can be integrated simultaneously, the new dimension of parallelism can dramatically reduce the turnaround time in benchmark tests, sensitivities studies, and model tuning exercises. The strategy is not appropriate for exploring sensitivity of all model features, but it is very effective in many situations. Two examples are presented using the Community Atmosphere Model version 5. The first example demonstrates that the method is capable of characterizing the model cloud and precipitation sensitivity to time step length. A nudging technique is also applied to an additional set of simulations to help understand the contribution of physics-dynamics interaction to the detected time step sensitivity. In the second example, multiple empirical parameters related to cloud microphysics and aerosol lifecycle are perturbed simultaneously in order to explore which parameters have the largest impact on the simulated global mean top-of-atmosphere radiation balance. Results show that in both examples, short ensembles are able to correctly reproduce the main signals of model sensitivities revealed by traditional long-term climate simulations for fast processes in the climate system. The efficiency of the ensemble method makes it particularly useful for the development of high-resolution, costly and complex climate models.

  8. Assessing uncertainties in crop and pasture ensemble model simulations of productivity and N2O emissions

    Science.gov (United States)

    Simulation models are extensively used to predict agricultural productivity and greenhouse gas (GHG) emissions. However, the uncertainties of (reduced) model ensemble simulations have not been assessed systematically for variables affecting food security and climate change mitigation, within multisp...

  9. Predicting artificailly drained areas by means of selective model ensemble

    DEFF Research Database (Denmark)

    Møller, Anders Bjørn; Beucher, Amélie; Iversen, Bo Vangsø

    . The approaches employed include decision trees, discriminant analysis, regression models, neural networks and support vector machines amongst others. Several models are trained with each method, using variously the original soil covariates and principal components of the covariates. With a large ensemble...... out since the mid-19th century, and it has been estimated that half of the cultivated area is artificially drained (Olesen, 2009). A number of machine learning approaches can be used to predict artificially drained areas in geographic space. However, instead of choosing the most accurate model....... The study aims firstly to train a large number of models to predict the extent of artificially drained areas using various machine learning approaches. Secondly, the study will develop a method for selecting the models, which give a good prediction of artificially drained areas, when used in conjunction...

  10. Operational hydrological forecasting in Bavaria. Part II: Ensemble forecasting

    Science.gov (United States)

    Ehret, U.; Vogelbacher, A.; Moritz, K.; Laurent, S.; Meyer, I.; Haag, I.

    2009-04-01

    In part I of this study, the operational flood forecasting system in Bavaria and an approach to identify and quantify forecast uncertainty was introduced. The approach is split into the calculation of an empirical 'overall error' from archived forecasts and the calculation of an empirical 'model error' based on hydrometeorological forecast tests, where rainfall observations were used instead of forecasts. The 'model error' can especially in upstream catchments where forecast uncertainty is strongly dependent on the current predictability of the atrmosphere be superimposed on the spread of a hydrometeorological ensemble forecast. In Bavaria, two meteorological ensemble prediction systems are currently tested for operational use: the 16-member COSMO-LEPS forecast and a poor man's ensemble composed of DWD GME, DWD Cosmo-EU, NCEP GFS, Aladin-Austria, MeteoSwiss Cosmo-7. The determination of the overall forecast uncertainty is dependent on the catchment characteristics: 1. Upstream catchment with high influence of weather forecast a) A hydrological ensemble forecast is calculated using each of the meteorological forecast members as forcing. b) Corresponding to the characteristics of the meteorological ensemble forecast, each resulting forecast hydrograph can be regarded as equally likely. c) The 'model error' distribution, with parameters dependent on hydrological case and lead time, is added to each forecast timestep of each ensemble member d) For each forecast timestep, the overall (i.e. over all 'model error' distribution of each ensemble member) error distribution is calculated e) From this distribution, the uncertainty range on a desired level (here: the 10% and 90% percentile) is extracted and drawn as forecast envelope. f) As the mean or median of an ensemble forecast does not necessarily exhibit meteorologically sound temporal evolution, a single hydrological forecast termed 'lead forecast' is chosen and shown in addition to the uncertainty bounds. This can be

  11. Distributed HUC-based modeling with SUMMA for ensemble streamflow forecasting over large regional domains.

    Science.gov (United States)

    Saharia, M.; Wood, A.; Clark, M. P.; Bennett, A.; Nijssen, B.; Clark, E.; Newman, A. J.

    2017-12-01

    Most operational streamflow forecasting systems rely on a forecaster-in-the-loop approach in which some parts of the forecast workflow require an experienced human forecaster. But this approach faces challenges surrounding process reproducibility, hindcasting capability, and extension to large domains. The operational hydrologic community is increasingly moving towards `over-the-loop' (completely automated) large-domain simulations yet recent developments indicate a widespread lack of community knowledge about the strengths and weaknesses of such systems for forecasting. A realistic representation of land surface hydrologic processes is a critical element for improving forecasts, but often comes at the substantial cost of forecast system agility and efficiency. While popular grid-based models support the distributed representation of land surface processes, intermediate-scale Hydrologic Unit Code (HUC)-based modeling could provide a more efficient and process-aligned spatial discretization, reducing the need for tradeoffs between model complexity and critical forecasting requirements such as ensemble methods and comprehensive model calibration. The National Center for Atmospheric Research is collaborating with the University of Washington, the Bureau of Reclamation and the USACE to implement, assess, and demonstrate real-time, over-the-loop distributed streamflow forecasting for several large western US river basins and regions. In this presentation, we present early results from short to medium range hydrologic and streamflow forecasts for the Pacific Northwest (PNW). We employ a real-time 1/16th degree daily ensemble model forcings as well as downscaled Global Ensemble Forecasting System (GEFS) meteorological forecasts. These datasets drive an intermediate-scale configuration of the Structure for Unifying Multiple Modeling Alternatives (SUMMA) model, which represents the PNW using over 11,700 HUCs. The system produces not only streamflow forecasts (using the Mizu

  12. LGM permafrost distribution: how well can the latest PMIP multi-model ensembles perform reconstruction?

    Directory of Open Access Journals (Sweden)

    K. Saito

    2013-08-01

    Full Text Available Here, global-scale frozen ground distribution from the Last Glacial Maximum (LGM has been reconstructed using multi-model ensembles of global climate models, and then compared with evidence-based knowledge and earlier numerical results. Modeled soil temperatures, taken from Paleoclimate Modelling Intercomparison Project phase III (PMIP3 simulations, were used to diagnose the subsurface thermal regime and determine underlying frozen ground types for the present day (pre-industrial; 0 kya and the LGM (21 kya. This direct method was then compared to an earlier indirect method, which categorizes underlying frozen ground type from surface air temperature, applying to both the PMIP2 (phase II and PMIP3 products. Both direct and indirect diagnoses for 0 kya showed strong agreement with the present-day observation-based map. The soil temperature ensemble showed a higher diversity around the border between permafrost and seasonally frozen ground among the models, partly due to varying subsurface processes, implementation, and settings. The area of continuous permafrost estimated by the PMIP3 multi-model analysis through the direct (indirect method was 26.0 (17.7 million km2 for LGM, in contrast to 15.1 (11.2 million km2 for the pre-industrial control, whereas seasonally frozen ground decreased from 34.5 (26.6 million km2 to 18.1 (16.0 million km2. These changes in area resulted mainly from a cooler climate at LGM, but from other factors as well, such as the presence of huge land ice sheets and the consequent expansion of total land area due to sea-level change. LGM permafrost boundaries modeled by the PMIP3 ensemble – improved over those of the PMIP2 due to higher spatial resolutions and improved climatology – also compared better to previous knowledge derived from geomorphological and geocryological evidence. Combinatorial applications of coupled climate models and detailed stand-alone physical-ecological models for the cold-region terrestrial

  13. LGM permafrost distribution: how well can the latest PMIP multi-model ensembles perform reconstruction?

    Science.gov (United States)

    Saito, K.; Sueyoshi, T.; Marchenko, S.; Romanovsky, V.; Otto-Bliesner, B.; Walsh, J.; Bigelow, N.; Hendricks, A.; Yoshikawa, K.

    2013-08-01

    Here, global-scale frozen ground distribution from the Last Glacial Maximum (LGM) has been reconstructed using multi-model ensembles of global climate models, and then compared with evidence-based knowledge and earlier numerical results. Modeled soil temperatures, taken from Paleoclimate Modelling Intercomparison Project phase III (PMIP3) simulations, were used to diagnose the subsurface thermal regime and determine underlying frozen ground types for the present day (pre-industrial; 0 kya) and the LGM (21 kya). This direct method was then compared to an earlier indirect method, which categorizes underlying frozen ground type from surface air temperature, applying to both the PMIP2 (phase II) and PMIP3 products. Both direct and indirect diagnoses for 0 kya showed strong agreement with the present-day observation-based map. The soil temperature ensemble showed a higher diversity around the border between permafrost and seasonally frozen ground among the models, partly due to varying subsurface processes, implementation, and settings. The area of continuous permafrost estimated by the PMIP3 multi-model analysis through the direct (indirect) method was 26.0 (17.7) million km2 for LGM, in contrast to 15.1 (11.2) million km2 for the pre-industrial control, whereas seasonally frozen ground decreased from 34.5 (26.6) million km2 to 18.1 (16.0) million km2. These changes in area resulted mainly from a cooler climate at LGM, but from other factors as well, such as the presence of huge land ice sheets and the consequent expansion of total land area due to sea-level change. LGM permafrost boundaries modeled by the PMIP3 ensemble - improved over those of the PMIP2 due to higher spatial resolutions and improved climatology - also compared better to previous knowledge derived from geomorphological and geocryological evidence. Combinatorial applications of coupled climate models and detailed stand-alone physical-ecological models for the cold-region terrestrial, paleo-, and modern

  14. Assessing the predictive capability of randomized tree-based ensembles in streamflow modelling

    Science.gov (United States)

    Galelli, S.; Castelletti, A.

    2013-07-01

    Combining randomization methods with ensemble prediction is emerging as an effective option to balance accuracy and computational efficiency in data-driven modelling. In this paper, we investigate the prediction capability of extremely randomized trees (Extra-Trees), in terms of accuracy, explanation ability and computational efficiency, in a streamflow modelling exercise. Extra-Trees are a totally randomized tree-based ensemble method that (i) alleviates the poor generalisation property and tendency to overfitting of traditional standalone decision trees (e.g. CART); (ii) is computationally efficient; and, (iii) allows to infer the relative importance of the input variables, which might help in the ex-post physical interpretation of the model. The Extra-Trees potential is analysed on two real-world case studies - Marina catchment (Singapore) and Canning River (Western Australia) - representing two different morphoclimatic contexts. The evaluation is performed against other tree-based methods (CART and M5) and parametric data-driven approaches (ANNs and multiple linear regression). Results show that Extra-Trees perform comparatively well to the best of the benchmarks (i.e. M5) in both the watersheds, while outperforming the other approaches in terms of computational requirement when adopted on large datasets. In addition, the ranking of the input variable provided can be given a physically meaningful interpretation.

  15. Development of a regional ensemble prediction method for probabilistic weather prediction

    International Nuclear Information System (INIS)

    Nohara, Daisuke; Tamura, Hidetoshi; Hirakuchi, Hiromaru

    2015-01-01

    A regional ensemble prediction method has been developed to provide probabilistic weather prediction using a numerical weather prediction model. To obtain consistent perturbations with the synoptic weather pattern, both of initial and lateral boundary perturbations were given by differences between control and ensemble member of the Japan Meteorological Agency (JMA)'s operational one-week ensemble forecast. The method provides a multiple ensemble member with a horizontal resolution of 15 km for 48-hour based on a downscaling of the JMA's operational global forecast accompanied with the perturbations. The ensemble prediction was examined in the case of heavy snow fall event in Kanto area on January 14, 2013. The results showed that the predictions represent different features of high-resolution spatiotemporal distribution of precipitation affected by intensity and location of extra-tropical cyclone in each ensemble member. Although the ensemble prediction has model bias of mean values and variances in some variables such as wind speed and solar radiation, the ensemble prediction has a potential to append a probabilistic information to a deterministic prediction. (author)

  16. Using ensemble models to identify and apportion heavy metal pollution sources in agricultural soils on a local scale

    International Nuclear Information System (INIS)

    Wang, Qi; Xie, Zhiyi; Li, Fangbai

    2015-01-01

    This study aims to identify and apportion multi-source and multi-phase heavy metal pollution from natural and anthropogenic inputs using ensemble models that include stochastic gradient boosting (SGB) and random forest (RF) in agricultural soils on the local scale. The heavy metal pollution sources were quantitatively assessed, and the results illustrated the suitability of the ensemble models for the assessment of multi-source and multi-phase heavy metal pollution in agricultural soils on the local scale. The results of SGB and RF consistently demonstrated that anthropogenic sources contributed the most to the concentrations of Pb and Cd in agricultural soils in the study region and that SGB performed better than RF. - Highlights: • Ensemble models including stochastic gradient boosting and random forest are used. • The models were verified by cross-validation and SGB performed better than RF. • Heavy metal pollution sources on a local scale are identified and apportioned. • Models illustrate good suitability in assessing sources in local-scale agricultural soils. • Anthropogenic sources contributed most to soil Pb and Cd pollution in our case. - Multi-source and multi-phase pollution by heavy metals in agricultural soils on a local scale were identified and apportioned.

  17. WRF model sensitivity to choice of parameterization: a study of the `York Flood 1999'

    Science.gov (United States)

    Remesan, Renji; Bellerby, Tim; Holman, Ian; Frostick, Lynne

    2015-10-01

    Numerical weather modelling has gained considerable attention in the field of hydrology especially in un-gauged catchments and in conjunction with distributed models. As a consequence, the accuracy with which these models represent precipitation, sub-grid-scale processes and exceptional events has become of considerable concern to the hydrological community. This paper presents sensitivity analyses for the Weather Research Forecast (WRF) model with respect to the choice of physical parameterization schemes (both cumulus parameterisation (CPSs) and microphysics parameterization schemes (MPSs)) used to represent the `1999 York Flood' event, which occurred over North Yorkshire, UK, 1st-14th March 1999. The study assessed four CPSs (Kain-Fritsch (KF2), Betts-Miller-Janjic (BMJ), Grell-Devenyi ensemble (GD) and the old Kain-Fritsch (KF1)) and four MPSs (Kessler, Lin et al., WRF single-moment 3-class (WSM3) and WRF single-moment 5-class (WSM5)] with respect to their influence on modelled rainfall. The study suggests that the BMJ scheme may be a better cumulus parameterization choice for the study region, giving a consistently better performance than other three CPSs, though there are suggestions of underestimation. The WSM3 was identified as the best MPSs and a combined WSM3/BMJ model setup produced realistic estimates of precipitation quantities for this exceptional flood event. This study analysed spatial variability in WRF performance through categorical indices, including POD, FBI, FAR and CSI during York Flood 1999 under various model settings. Moreover, the WRF model was good at predicting high-intensity rare events over the Yorkshire region, suggesting it has potential for operational use.

  18. NASA's EOSDIS Cumulus: Ingesting, Archiving, Managing, and Distributing Earth Science Data from the Commercial Cloud

    Science.gov (United States)

    Baynes, Katie; Ramachandran, Rahul; Pilone, Dan; Quinn, Patrick; Gilman, Jason; Schuler, Ian; Jazayeri, Alireza

    2017-01-01

    NASA's Earth Observing System Data and Information System (EOSDIS) has been working towards a vision of a cloud-based, highly-flexible, ingest, archive, management, and distribution system for its ever-growing and evolving data holdings. This system, Cumulus, is emerging from its prototyping stages and is poised to make a huge impact on how NASA manages and disseminates its Earth science data. This talk will outline the motivation for this work, present the achievements and hurdles of the past 18 months and will chart a course for the future expansion of the Cumulus expansion. We will explore on not just the technical, but also the socio-technical challenges that we face in evolving a system of this magnitude into the cloud and how we are rising to meet those challenges through open collaboration and intentional stakeholder engagement.

  19. MSEBAG: a dynamic classifier ensemble generation based on `minimum-sufficient ensemble' and bagging

    Science.gov (United States)

    Chen, Lei; Kamel, Mohamed S.

    2016-01-01

    In this paper, we propose a dynamic classifier system, MSEBAG, which is characterised by searching for the 'minimum-sufficient ensemble' and bagging at the ensemble level. It adopts an 'over-generation and selection' strategy and aims to achieve a good bias-variance trade-off. In the training phase, MSEBAG first searches for the 'minimum-sufficient ensemble', which maximises the in-sample fitness with the minimal number of base classifiers. Then, starting from the 'minimum-sufficient ensemble', a backward stepwise algorithm is employed to generate a collection of ensembles. The objective is to create a collection of ensembles with a descending fitness on the data, as well as a descending complexity in the structure. MSEBAG dynamically selects the ensembles from the collection for the decision aggregation. The extended adaptive aggregation (EAA) approach, a bagging-style algorithm performed at the ensemble level, is employed for this task. EAA searches for the competent ensembles using a score function, which takes into consideration both the in-sample fitness and the confidence of the statistical inference, and averages the decisions of the selected ensembles to label the test pattern. The experimental results show that the proposed MSEBAG outperforms the benchmarks on average.

  20. Ensemble ecosystem modeling for predicting ecosystem response to predator reintroduction.

    Science.gov (United States)

    Baker, Christopher M; Gordon, Ascelin; Bode, Michael

    2017-04-01

    Introducing a new or extirpated species to an ecosystem is risky, and managers need quantitative methods that can predict the consequences for the recipient ecosystem. Proponents of keystone predator reintroductions commonly argue that the presence of the predator will restore ecosystem function, but this has not always been the case, and mathematical modeling has an important role to play in predicting how reintroductions will likely play out. We devised an ensemble modeling method that integrates species interaction networks and dynamic community simulations and used it to describe the range of plausible consequences of 2 keystone-predator reintroductions: wolves (Canis lupus) to Yellowstone National Park and dingoes (Canis dingo) to a national park in Australia. Although previous methods for predicting ecosystem responses to such interventions focused on predicting changes around a given equilibrium, we used Lotka-Volterra equations to predict changing abundances through time. We applied our method to interaction networks for wolves in Yellowstone National Park and for dingoes in Australia. Our model replicated the observed dynamics in Yellowstone National Park and produced a larger range of potential outcomes for the dingo network. However, we also found that changes in small vertebrates or invertebrates gave a good indication about the potential future state of the system. Our method allowed us to predict when the systems were far from equilibrium. Our results showed that the method can also be used to predict which species may increase or decrease following a reintroduction and can identify species that are important to monitor (i.e., species whose changes in abundance give extra insight into broad changes in the system). Ensemble ecosystem modeling can also be applied to assess the ecosystem-wide implications of other types of interventions including assisted migration, biocontrol, and invasive species eradication. © 2016 Society for Conservation Biology.

  1. The North American Multi-Model Ensemble (NMME): Phase-1 Seasonal to Interannual Prediction, Phase-2 Toward Developing Intra-Seasonal Prediction

    Science.gov (United States)

    Kirtman, Ben P.; Min, Dughong; Infanti, Johnna M.; Kinter, James L., III; Paolino, Daniel A.; Zhang, Qin; vandenDool, Huug; Saha, Suranjana; Mendez, Malaquias Pena; Becker, Emily; hide

    2013-01-01

    The recent US National Academies report "Assessment of Intraseasonal to Interannual Climate Prediction and Predictability" was unequivocal in recommending the need for the development of a North American Multi-Model Ensemble (NMME) operational predictive capability. Indeed, this effort is required to meet the specific tailored regional prediction and decision support needs of a large community of climate information users. The multi-model ensemble approach has proven extremely effective at quantifying prediction uncertainty due to uncertainty in model formulation, and has proven to produce better prediction quality (on average) then any single model ensemble. This multi-model approach is the basis for several international collaborative prediction research efforts, an operational European system and there are numerous examples of how this multi-model ensemble approach yields superior forecasts compared to any single model. Based on two NOAA Climate Test Bed (CTB) NMME workshops (February 18, and April 8, 2011) a collaborative and coordinated implementation strategy for a NMME prediction system has been developed and is currently delivering real-time seasonal-to-interannual predictions on the NOAA Climate Prediction Center (CPC) operational schedule. The hindcast and real-time prediction data is readily available (e.g., http://iridl.ldeo.columbia.edu/SOURCES/.Models/.NMME/) and in graphical format from CPC (http://origin.cpc.ncep.noaa.gov/products/people/wd51yf/NMME/index.html). Moreover, the NMME forecast are already currently being used as guidance for operational forecasters. This paper describes the new NMME effort, presents an overview of the multi-model forecast quality, and the complementary skill associated with individual models.

  2. Ensemble and Bias-Correction Techniques for Air-Quality Model Forecasts of Surface O3 and PM2.5 during the TEXAQS-II Experiment of 2006

    Science.gov (United States)

    Several air quality forecasting ensembles were created from seven models, running in real-time during the 2006 Texas Air Quality (TEXAQS-II) experiment. These multi-model ensembles incorporated a diverse set of meteorological models, chemical mechanisms, and emission inventories...

  3. Creating Weather System Ensembles Through Synergistic Process Modeling and Machine Learning

    Science.gov (United States)

    Chen, B.; Posselt, D. J.; Nguyen, H.; Wu, L.; Su, H.; Braverman, A. J.

    2017-12-01

    Earth's weather and climate are sensitive to a variety of control factors (e.g., initial state, forcing functions, etc). Characterizing the response of the atmosphere to a change in initial conditions or model forcing is critical for weather forecasting (ensemble prediction) and climate change assessment. Input - response relationships can be quantified by generating an ensemble of multiple (100s to 1000s) realistic realizations of weather and climate states. Atmospheric numerical models generate simulated data through discretized numerical approximation of the partial differential equations (PDEs) governing the underlying physics. However, the computational expense of running high resolution atmospheric state models makes generation of more than a few simulations infeasible. Here, we discuss an experiment wherein we approximate the numerical PDE solver within the Weather Research and Forecasting (WRF) Model using neural networks trained on a subset of model run outputs. Once trained, these neural nets can produce large number of realization of weather states from a small number of deterministic simulations with speeds that are orders of magnitude faster than the underlying PDE solver. Our neural network architecture is inspired by the governing partial differential equations. These equations are location-invariant, and consist of first and second derivations. As such, we use a 3x3 lon-lat grid of atmospheric profiles as the predictor in the neural net to provide the network the information necessary to compute the first and second moments. Results indicate that the neural network algorithm can approximate the PDE outputs with high degree of accuracy (less than 1% error), and that this error increases as a function of the prediction time lag.

  4. Rainfall downscaling of weekly ensemble forecasts using self-organising maps

    Directory of Open Access Journals (Sweden)

    Masamichi Ohba

    2016-03-01

    Full Text Available This study presents an application of self-organising maps (SOMs to downscaling medium-range ensemble forecasts and probabilistic prediction of local precipitation in Japan. SOM was applied to analyse and connect the relationship between atmospheric patterns over Japan and local high-resolution precipitation data. Multiple SOM was simultaneously employed on four variables derived from the JRA-55 reanalysis over the area of study (south-western Japan, and a two-dimensional lattice of weather patterns (WPs was obtained. Weekly ensemble forecasts can be downscaled to local precipitation using the obtained multiple SOM. The downscaled precipitation is derived by the five SOM lattices based on the WPs of the global model ensemble forecasts for a particular day in 2009–2011. Because this method effectively handles the stochastic uncertainties from the large number of ensemble members, a probabilistic local precipitation is easily and quickly obtained from the ensemble forecasts. This downscaling of ensemble forecasts provides results better than those from a 20-km global spectral model (i.e. capturing the relatively detailed precipitation distribution over the region. To capture the effect of the detailed pattern differences in each SOM node, a statistical model is additionally concreted for each SOM node. The predictability skill of the ensemble forecasts is significantly improved under the neural network-statistics hybrid-downscaling technique, which then brings a much better skill score than the traditional method. It is expected that the results of this study will provide better guidance to the user community and contribute to the future development of dam-management models.

  5. Ensemble-based forecasting at Horns Rev: Ensemble conversion and kernel dressing

    DEFF Research Database (Denmark)

    Pinson, Pierre; Madsen, Henrik

    . The obtained ensemble forecasts of wind power are then converted into predictive distributions with an original adaptive kernel dressing method. The shape of the kernels is driven by a mean-variance model, the parameters of which are recursively estimated in order to maximize the overall skill of obtained...

  6. Reconstruction of the 1997/1998 El Nino from TOPEX/POSEIDON and TOGA/TAO Data Using a Massively Parallel Pacific-Ocean Model and Ensemble Kalman Filter

    Science.gov (United States)

    Keppenne, C. L.; Rienecker, M.; Borovikov, A. Y.

    1999-01-01

    Two massively parallel data assimilation systems in which the model forecast-error covariances are estimated from the distribution of an ensemble of model integrations are applied to the assimilation of 97-98 TOPEX/POSEIDON altimetry and TOGA/TAO temperature data into a Pacific basin version the NASA Seasonal to Interannual Prediction Project (NSIPP)ls quasi-isopycnal ocean general circulation model. in the first system, ensemble of model runs forced by an ensemble of atmospheric model simulations is used to calculate asymptotic error statistics. The data assimilation then occurs in the reduced phase space spanned by the corresponding leading empirical orthogonal functions. The second system is an ensemble Kalman filter in which new error statistics are computed during each assimilation cycle from the time-dependent ensemble distribution. The data assimilation experiments are conducted on NSIPP's 512-processor CRAY T3E. The two data assimilation systems are validated by withholding part of the data and quantifying the extent to which the withheld information can be inferred from the assimilation of the remaining data. The pros and cons of each system are discussed.

  7. Ensembl 2004.

    Science.gov (United States)

    Birney, E; Andrews, D; Bevan, P; Caccamo, M; Cameron, G; Chen, Y; Clarke, L; Coates, G; Cox, T; Cuff, J; Curwen, V; Cutts, T; Down, T; Durbin, R; Eyras, E; Fernandez-Suarez, X M; Gane, P; Gibbins, B; Gilbert, J; Hammond, M; Hotz, H; Iyer, V; Kahari, A; Jekosch, K; Kasprzyk, A; Keefe, D; Keenan, S; Lehvaslaiho, H; McVicker, G; Melsopp, C; Meidl, P; Mongin, E; Pettett, R; Potter, S; Proctor, G; Rae, M; Searle, S; Slater, G; Smedley, D; Smith, J; Spooner, W; Stabenau, A; Stalker, J; Storey, R; Ureta-Vidal, A; Woodwark, C; Clamp, M; Hubbard, T

    2004-01-01

    The Ensembl (http://www.ensembl.org/) database project provides a bioinformatics framework to organize biology around the sequences of large genomes. It is a comprehensive and integrated source of annotation of large genome sequences, available via interactive website, web services or flat files. As well as being one of the leading sources of genome annotation, Ensembl is an open source software engineering project to develop a portable system able to handle very large genomes and associated requirements. The facilities of the system range from sequence analysis to data storage and visualization and installations exist around the world both in companies and at academic sites. With a total of nine genome sequences available from Ensembl and more genomes to follow, recent developments have focused mainly on closer integration between genomes and external data.

  8. Efficient Kernel-Based Ensemble Gaussian Mixture Filtering

    KAUST Repository

    Liu, Bo

    2015-11-11

    We consider the Bayesian filtering problem for data assimilation following the kernel-based ensemble Gaussian-mixture filtering (EnGMF) approach introduced by Anderson and Anderson (1999). In this approach, the posterior distribution of the system state is propagated with the model using the ensemble Monte Carlo method, providing a forecast ensemble that is then used to construct a prior Gaussian-mixture (GM) based on the kernel density estimator. This results in two update steps: a Kalman filter (KF)-like update of the ensemble members and a particle filter (PF)-like update of the weights, followed by a resampling step to start a new forecast cycle. After formulating EnGMF for any observational operator, we analyze the influence of the bandwidth parameter of the kernel function on the covariance of the posterior distribution. We then focus on two aspects: i) the efficient implementation of EnGMF with (relatively) small ensembles, where we propose a new deterministic resampling strategy preserving the first two moments of the posterior GM to limit the sampling error; and ii) the analysis of the effect of the bandwidth parameter on contributions of KF and PF updates and on the weights variance. Numerical results using the Lorenz-96 model are presented to assess the behavior of EnGMF with deterministic resampling, study its sensitivity to different parameters and settings, and evaluate its performance against ensemble KFs. The proposed EnGMF approach with deterministic resampling suggests improved estimates in all tested scenarios, and is shown to require less localization and to be less sensitive to the choice of filtering parameters.

  9. Benefits of an ultra large and multiresolution ensemble for estimating available wind power

    Science.gov (United States)

    Berndt, Jonas; Hoppe, Charlotte; Elbern, Hendrik

    2016-04-01

    In this study we investigate the benefits of an ultra large ensemble with up to 1000 members including multiple nesting with a target horizontal resolution of 1 km. The ensemble shall be used as a basis to detect events of extreme errors in wind power forecasting. Forecast value is the wind vector at wind turbine hub height (~ 100 m) in the short range (1 to 24 hour). Current wind power forecast systems rest already on NWP ensemble models. However, only calibrated ensembles from meteorological institutions serve as input so far, with limited spatial resolution (˜10 - 80 km) and member number (˜ 50). Perturbations related to the specific merits of wind power production are yet missing. Thus, single extreme error events which are not detected by such ensemble power forecasts occur infrequently. The numerical forecast model used in this study is the Weather Research and Forecasting Model (WRF). Model uncertainties are represented by stochastic parametrization of sub-grid processes via stochastically perturbed parametrization tendencies and in conjunction via the complementary stochastic kinetic-energy backscatter scheme already provided by WRF. We perform continuous ensemble updates by comparing each ensemble member with available observations using a sequential importance resampling filter to improve the model accuracy while maintaining ensemble spread. Additionally, we use different ensemble systems from global models (ECMWF and GFS) as input and boundary conditions to capture different synoptic conditions. Critical weather situations which are connected to extreme error events are located and corresponding perturbation techniques are applied. The demanding computational effort is overcome by utilising the supercomputer JUQUEEN at the Forschungszentrum Juelich.

  10. Comparison of ensemble post-processing approaches, based on empirical and dynamical error modelisation of rainfall-runoff model forecasts

    Science.gov (United States)

    Chardon, J.; Mathevet, T.; Le Lay, M.; Gailhard, J.

    2012-04-01

    In the context of a national energy company (EDF : Electricité de France), hydro-meteorological forecasts are necessary to ensure safety and security of installations, meet environmental standards and improve water ressources management and decision making. Hydrological ensemble forecasts allow a better representation of meteorological and hydrological forecasts uncertainties and improve human expertise of hydrological forecasts, which is essential to synthesize available informations, coming from different meteorological and hydrological models and human experience. An operational hydrological ensemble forecasting chain has been developed at EDF since 2008 and is being used since 2010 on more than 30 watersheds in France. This ensemble forecasting chain is characterized ensemble pre-processing (rainfall and temperature) and post-processing (streamflow), where a large human expertise is solicited. The aim of this paper is to compare 2 hydrological ensemble post-processing methods developed at EDF in order improve ensemble forecasts reliability (similar to Monatanari &Brath, 2004; Schaefli et al., 2007). The aim of the post-processing methods is to dress hydrological ensemble forecasts with hydrological model uncertainties, based on perfect forecasts. The first method (called empirical approach) is based on a statistical modelisation of empirical error of perfect forecasts, by streamflow sub-samples of quantile class and lead-time. The second method (called dynamical approach) is based on streamflow sub-samples of quantile class and streamflow variation, and lead-time. On a set of 20 watersheds used for operational forecasts, results show that both approaches are necessary to ensure a good post-processing of hydrological ensemble, allowing a good improvement of reliability, skill and sharpness of ensemble forecasts. The comparison of the empirical and dynamical approaches shows the limits of the empirical approach which is not able to take into account hydrological

  11. Various multistage ensembles for prediction of heating energy consumption

    Directory of Open Access Journals (Sweden)

    Radisa Jovanovic

    2015-04-01

    Full Text Available Feedforward neural network models are created for prediction of daily heating energy consumption of a NTNU university campus Gloshaugen using actual measured data for training and testing. Improvement of prediction accuracy is proposed by using neural network ensemble. Previously trained feed-forward neural networks are first separated into clusters, using k-means algorithm, and then the best network of each cluster is chosen as member of an ensemble. Two conventional averaging methods for obtaining ensemble output are applied; simple and weighted. In order to achieve better prediction results, multistage ensemble is investigated. As second level, adaptive neuro-fuzzy inference system with various clustering and membership functions are used to aggregate the selected ensemble members. Feedforward neural network in second stage is also analyzed. It is shown that using ensemble of neural networks can predict heating energy consumption with better accuracy than the best trained single neural network, while the best results are achieved with multistage ensemble.

  12. Clustering, randomness, and regularity in cloud fields: 2. Cumulus cloud fields

    Science.gov (United States)

    Zhu, T.; Lee, J.; Weger, R. C.; Welch, R. M.

    1992-12-01

    During the last decade a major controversy has been brewing concerning the proper characterization of cumulus convection. The prevailing view has been that cumulus clouds form in clusters, in which cloud spacing is closer than that found for the overall cloud field and which maintains its identity over many cloud lifetimes. This "mutual protection hypothesis" of Randall and Huffman (1980) has been challenged by the "inhibition hypothesis" of Ramirez et al. (1990) which strongly suggests that the spatial distribution of cumuli must tend toward a regular distribution. A dilemma has resulted because observations have been reported to support both hypotheses. The present work reports a detailed analysis of cumulus cloud field spatial distributions based upon Landsat, Advanced Very High Resolution Radiometer, and Skylab data. Both nearest-neighbor and point-to-cloud cumulative distribution function statistics are investigated. The results show unequivocally that when both large and small clouds are included in the cloud field distribution, the cloud field always has a strong clustering signal. The strength of clustering is largest at cloud diameters of about 200-300 m, diminishing with increasing cloud diameter. In many cases, clusters of small clouds are found which are not closely associated with large clouds. As the small clouds are eliminated from consideration, the cloud field typically tends towards regularity. Thus it would appear that the "inhibition hypothesis" of Ramirez and Bras (1990) has been verified for the large clouds. However, these results are based upon the analysis of point processes. A more exact analysis also is made which takes into account the cloud size distributions. Since distinct clouds are by definition nonoverlapping, cloud size effects place a restriction upon the possible locations of clouds in the cloud field. The net effect of this analysis is that the large clouds appear to be randomly distributed, with only weak tendencies towards

  13. Quark ensembles with infinite correlation length

    OpenAIRE

    Molodtsov, S. V.; Zinovjev, G. M.

    2014-01-01

    By studying quark ensembles with infinite correlation length we formulate the quantum field theory model that, as we show, is exactly integrable and develops an instability of its standard vacuum ensemble (the Dirac sea). We argue such an instability is rooted in high ground state degeneracy (for 'realistic' space-time dimensions) featuring a fairly specific form of energy distribution, and with the cutoff parameter going to infinity this inherent energy distribution becomes infinitely narrow...

  14. Ensemble assimilation of JASON/ENVISAT and JASON/AltiKA altimetric observations with stochastic parameterization of the model dynamical uncertainties

    Science.gov (United States)

    Brasseur, Pierre; Candille, Guillem; Bouttier, Pierre-Antoine; Brankart, Jean-Michel; Verron, Jacques

    2015-04-01

    The objective of this study is to explicitly simulate and quantify the uncertainty related to sea-level anomalies diagnosed from eddy-resolving ocean circulation models, in order to develop advanced methods suitable for addressing along-track altimetric data assimilation into such models. This work is carried out jointly with the MyOcean and SANGOMA (Stochastic Assimilation for the Next Generation Ocean Model Applications) consortium, funded by EU under the GMES umbrella over the 2012-2015 period. In this framework, a realistic circulation model of the North Atlantic ocean at 1/4° resolution (NATL025 configuration) has been adapted to include effects of unresolved scales on the dynamics. This is achieved by introducing stochastic perturbations of the equation of state to represent the associated model uncertainty. Assimilation experiments are designed using altimetric data from past and on-going missions (Jason-2 and Saral/AltiKA experiments, and Cryosat-2 for fully independent altimetric validation) to better control the Gulf Stream circulation, especially the frontal regions which are predominantly affected by the non-resolved dynamical scales. An ensemble based on such stochastic perturbations is then produced and evaluated -through the probabilistic criteria: the reliability and the resolution- using the model equivalent of along-track altimetric observations. These three elements (stochastic parameterization, ensemble simulation and 4D observation operator) are used together to perform optimal 4D analysis of along-track altimetry over 10-day assimilation windows. In this presentation, the results show that the free ensemble -before starting the assimilation process- well reproduces the climatological variability over the Gulf Stream area: the system is then pretty reliable but no informative (null probabilistic resolution). Updating the free ensemble with altimetric data leads to a better reliability and to an improvement of the information (resolution

  15. Regional climate simulations over South America: sensitivity to model physics and to the treatment of lateral boundary conditions using the MM5 model

    Energy Technology Data Exchange (ETDEWEB)

    Solman, Silvina A. [CONICET-UBA, Centro de Investigaciones del Mar y la Atmosfera (CIMA), Buenos Aires (Argentina); Universidad de Buenos Aires, Departamento de Ciencias de la Atmosfera y los Oceanos. Facultad de Ciencias Exactas y Naturales, Buenos Aires (Argentina); Pessacg, Natalia L. [CONICET-UBA, Centro de Investigaciones del Mar y la Atmosfera (CIMA), Buenos Aires (Argentina)

    2012-01-15

    In this study the capability of the MM5 model in simulating the main mode of intraseasonal variability during the warm season over South America is evaluated through a series of sensitivity experiments. Several 3-month simulations nested into ERA40 reanalysis were carried out using different cumulus schemes and planetary boundary layer schemes in an attempt to define the optimal combination of physical parameterizations for simulating alternating wet and dry conditions over La Plata Basin (LPB) and the South Atlantic Convergence Zone regions, respectively. The results were compared with different observational datasets and model evaluation was performed taking into account the spatial distribution of monthly precipitation and daily statistics of precipitation over the target regions. Though every experiment was able to capture the contrasting behavior of the precipitation during the simulated period, precipitation was largely underestimated particularly over the LPB region, mainly due to a misrepresentation in the moisture flux convergence. Experiments using grid nudging of the winds above the planetary boundary layer showed a better performance compared with those in which no constrains were imposed to the regional circulation within the model domain. Overall, no single experiment was found to perform the best over the entire domain and during the two contrasting months. The experiment that outperforms depends on the area of interest, being the simulation using the Grell (Kain-Fritsch) cumulus scheme in combination with the MRF planetary boundary layer scheme more adequate for subtropical (tropical) latitudes. The ensemble of the sensitivity experiments showed a better performance compared with any individual experiment. (orig.)

  16. Advances in sequential data assimilation and numerical weather forecasting: An Ensemble Transform Kalman-Bucy Filter, a study on clustering in deterministic ensemble square root filters, and a test of a new time stepping scheme in an atmospheric model

    Science.gov (United States)

    Amezcua, Javier

    This dissertation deals with aspects of sequential data assimilation (in particular ensemble Kalman filtering) and numerical weather forecasting. In the first part, the recently formulated Ensemble Kalman-Bucy (EnKBF) filter is revisited. It is shown that the previously used numerical integration scheme fails when the magnitude of the background error covariance grows beyond that of the observational error covariance in the forecast window. Therefore, we present a suitable integration scheme that handles the stiffening of the differential equations involved and doesn't represent further computational expense. Moreover, a transform-based alternative to the EnKBF is developed: under this scheme, the operations are performed in the ensemble space instead of in the state space. Advantages of this formulation are explained. For the first time, the EnKBF is implemented in an atmospheric model. The second part of this work deals with ensemble clustering, a phenomenon that arises when performing data assimilation using of deterministic ensemble square root filters in highly nonlinear forecast models. Namely, an M-member ensemble detaches into an outlier and a cluster of M-1 members. Previous works may suggest that this issue represents a failure of EnSRFs; this work dispels that notion. It is shown that ensemble clustering can be reverted also due to nonlinear processes, in particular the alternation between nonlinear expansion and compression of the ensemble for different regions of the attractor. Some EnSRFs that use random rotations have been developed to overcome this issue; these formulations are analyzed and their advantages and disadvantages with respect to common EnSRFs are discussed. The third and last part contains the implementation of the Robert-Asselin-Williams (RAW) filter in an atmospheric model. The RAW filter is an improvement to the widely popular Robert-Asselin filter that successfully suppresses spurious computational waves while avoiding any distortion

  17. Inhibitory effect of cadmium and tobacco alkaloids on expansion of porcine oocyte-cumulus complexes

    Czech Academy of Sciences Publication Activity Database

    Mlynarčíková, A.; Scsuková, S.; Vršanská, S.; Nagyová, Eva; Ficková, M.; Kolena, J.

    2004-01-01

    Roč. 12, - (2004), S62-64 ISSN 1210-7778 R&D Projects: GA AV ČR IAA5045102 Grant - others:VEGA(XX) 2/7179/20; VEGA(XX) 2/3052/23 Institutional research plan: CEZ:AV0Z5045916 Keywords : porcine follicles * cumulus expansion * hyaluronic acid Subject RIV: ED - Physiology

  18. Crop model improvement reduces the uncertainty of the response to temperature of multi-model ensembles

    DEFF Research Database (Denmark)

    Maiorano, Andrea; Martre, Pierre; Asseng, Senthold

    2017-01-01

    of models needed in a MME. Herein, 15 wheat growth models of a larger MME were improved through re-parameterization and/or incorporating or modifying heat stress effects on phenology, leaf growth and senescence, biomass growth, and grain number and size using detailed field experimental data from the USDA...... ensemble percentile range) of grain yields simulated by the MME on average by 39% in the calibration data set and by 26% in the independent evaluation data set for crops grown in mean seasonal temperatures >24 °C. MME mean squared error in simulating grain yield decreased by 37%. A reduction in MME...

  19. RACORO continental boundary layer cloud investigations: 1. Case study development and ensemble large-scale forcings

    Science.gov (United States)

    Vogelmann, Andrew M.; Fridlind, Ann M.; Toto, Tami; Endo, Satoshi; Lin, Wuyin; Wang, Jian; Feng, Sha; Zhang, Yunyan; Turner, David D.; Liu, Yangang; Li, Zhijin; Xie, Shaocheng; Ackerman, Andrew S.; Zhang, Minghua; Khairoutdinov, Marat

    2015-06-01

    Observation-based modeling case studies of continental boundary layer clouds have been developed to study cloudy boundary layers, aerosol influences upon them, and their representation in cloud- and global-scale models. Three 60 h case study periods span the temporal evolution of cumulus, stratiform, and drizzling boundary layer cloud systems, representing mixed and transitional states rather than idealized or canonical cases. Based on in situ measurements from the Routine AAF (Atmospheric Radiation Measurement (ARM) Aerial Facility) CLOWD (Clouds with Low Optical Water Depth) Optical Radiative Observations (RACORO) field campaign and remote sensing observations, the cases are designed with a modular configuration to simplify use in large-eddy simulations (LES) and single-column models. Aircraft measurements of aerosol number size distribution are fit to lognormal functions for concise representation in models. Values of the aerosol hygroscopicity parameter, κ, are derived from observations to be 0.10, which are lower than the 0.3 typical over continents and suggestive of a large aerosol organic fraction. Ensemble large-scale forcing data sets are derived from the ARM variational analysis, European Centre for Medium-Range Weather Forecasts, and a multiscale data assimilation system. The forcings are assessed through comparison of measured bulk atmospheric and cloud properties to those computed in "trial" large-eddy simulations, where more efficient run times are enabled through modest reductions in grid resolution and domain size compared to the full-sized LES grid. Simulations capture many of the general features observed, but the state-of-the-art forcings were limited at representing details of cloud onset, and tight gradients and high-resolution transients of importance. Methods for improving the initial conditions and forcings are discussed. The cases developed are available to the general modeling community for studying continental boundary clouds.

  20. RACORO Continental Boundary Layer Cloud Investigations: 1. Case Study Development and Ensemble Large-Scale Forcings

    Science.gov (United States)

    Vogelmann, Andrew M.; Fridlind, Ann M.; Toto, Tami; Endo, Satoshi; Lin, Wuyin; Wang, Jian; Feng, Sha; Zhang, Yunyan; Turner, David D.; Liu, Yangang; hide

    2015-01-01

    Observation-based modeling case studies of continental boundary layer clouds have been developed to study cloudy boundary layers, aerosol influences upon them, and their representation in cloud- and global-scale models. Three 60 h case study periods span the temporal evolution of cumulus, stratiform, and drizzling boundary layer cloud systems, representing mixed and transitional states rather than idealized or canonical cases. Based on in situ measurements from the Routine AAF (Atmospheric Radiation Measurement (ARM) Aerial Facility) CLOWD (Clouds with Low Optical Water Depth) Optical Radiative Observations (RACORO) field campaign and remote sensing observations, the cases are designed with a modular configuration to simplify use in large-eddy simulations (LES) and single-column models. Aircraft measurements of aerosol number size distribution are fit to lognormal functions for concise representation in models. Values of the aerosol hygroscopicity parameter, kappa, are derived from observations to be approximately 0.10, which are lower than the 0.3 typical over continents and suggestive of a large aerosol organic fraction. Ensemble large-scale forcing data sets are derived from the ARM variational analysis, European Centre for Medium-Range Weather Forecasts, and a multiscale data assimilation system. The forcings are assessed through comparison of measured bulk atmospheric and cloud properties to those computed in "trial" large-eddy simulations, where more efficient run times are enabled through modest reductions in grid resolution and domain size compared to the full-sized LES grid. Simulations capture many of the general features observed, but the state-of-the-art forcings were limited at representing details of cloud onset, and tight gradients and high-resolution transients of importance. Methods for improving the initial conditions and forcings are discussed. The cases developed are available to the general modeling community for studying continental boundary

  1. Regional interdependency of precipitation indices across Denmark in two ensembles of high-resolution RCMs

    DEFF Research Database (Denmark)

    Sunyer Pinya, Maria Antonia; Madsen, Henrik; Rosbjerg, Dan

    2013-01-01

    all these methods is that the climate models are independent. This study addresses the validity of this assumption for two ensembles of regional climate models (RCMs) from the Ensemble-Based Predictions of Climate Changes and their Impacts (ENSEMBLES) project based on the land cells covering Denmark....... Daily precipitation indices from an ensemble of RCMs driven by the 40-yrECMWFRe-Analysis (ERA-40) and an ensemble of the same RCMs driven by different general circulation models (GCMs) are analyzed. Two different methods are used to estimate the amount of independent information in the ensembles....... These are based on different statistical properties of a measure of climate model error. Additionally, a hierarchical cluster analysis is carried out. Regardless of the method used, the effective number of RCMs is smaller than the total number of RCMs. The estimated effective number of RCMs varies depending...

  2. Sequential ensemble-based optimal design for parameter estimation: SEQUENTIAL ENSEMBLE-BASED OPTIMAL DESIGN

    Energy Technology Data Exchange (ETDEWEB)

    Man, Jun [Zhejiang Provincial Key Laboratory of Agricultural Resources and Environment, Institute of Soil and Water Resources and Environmental Science, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou China; Zhang, Jiangjiang [Zhejiang Provincial Key Laboratory of Agricultural Resources and Environment, Institute of Soil and Water Resources and Environmental Science, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou China; Li, Weixuan [Pacific Northwest National Laboratory, Richland Washington USA; Zeng, Lingzao [Zhejiang Provincial Key Laboratory of Agricultural Resources and Environment, Institute of Soil and Water Resources and Environmental Science, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou China; Wu, Laosheng [Department of Environmental Sciences, University of California, Riverside California USA

    2016-10-01

    The ensemble Kalman filter (EnKF) has been widely used in parameter estimation for hydrological models. The focus of most previous studies was to develop more efficient analysis (estimation) algorithms. On the other hand, it is intuitively understandable that a well-designed sampling (data-collection) strategy should provide more informative measurements and subsequently improve the parameter estimation. In this work, a Sequential Ensemble-based Optimal Design (SEOD) method, coupled with EnKF, information theory and sequential optimal design, is proposed to improve the performance of parameter estimation. Based on the first-order and second-order statistics, different information metrics including the Shannon entropy difference (SD), degrees of freedom for signal (DFS) and relative entropy (RE) are used to design the optimal sampling strategy, respectively. The effectiveness of the proposed method is illustrated by synthetic one-dimensional and two-dimensional unsaturated flow case studies. It is shown that the designed sampling strategies can provide more accurate parameter estimation and state prediction compared with conventional sampling strategies. Optimal sampling designs based on various information metrics perform similarly in our cases. The effect of ensemble size on the optimal design is also investigated. Overall, larger ensemble size improves the parameter estimation and convergence of optimal sampling strategy. Although the proposed method is applied to unsaturated flow problems in this study, it can be equally applied in any other hydrological problems.

  3. DroidEnsemble: Detecting Android Malicious Applications with Ensemble of String and Structural Static Features

    KAUST Repository

    Wang, Wei

    2018-05-11

    Android platform has dominated the Operating System of mobile devices. However, the dramatic increase of Android malicious applications (malapps) has caused serious software failures to Android system and posed a great threat to users. The effective detection of Android malapps has thus become an emerging yet crucial issue. Characterizing the behaviors of Android applications (apps) is essential to detecting malapps. Most existing work on detecting Android malapps was mainly based on string static features such as permissions and API usage extracted from apps. There also exists work on the detection of Android malapps with structural features, such as Control Flow Graph (CFG) and Data Flow Graph (DFG). As Android malapps have become increasingly polymorphic and sophisticated, using only one type of static features may result in false negatives. In this work, we propose DroidEnsemble that takes advantages of both string features and structural features to systematically and comprehensively characterize the static behaviors of Android apps and thus build a more accurate detection model for the detection of Android malapps. We extract each app’s string features, including permissions, hardware features, filter intents, restricted API calls, used permissions, code patterns, as well as structural features like function call graph. We then use three machine learning algorithms, namely, Support Vector Machine (SVM), k-Nearest Neighbor (kNN) and Random Forest (RF), to evaluate the performance of these two types of features and of their ensemble. In the experiments, We evaluate our methods and models with 1386 benign apps and 1296 malapps. Extensive experimental results demonstrate the effectiveness of DroidEnsemble. It achieves the detection accuracy as 95.8% with only string features and as 90.68% with only structural features. DroidEnsemble reaches the detection accuracy as 98.4% with the ensemble of both types of features, reducing 9 false positives and 12 false

  4. Stability of a Model Explaining Selected Extramusical Influences on Solo and Small-Ensemble Festival Ratings

    Science.gov (United States)

    Bergee, Martin J.; Westfall, Claude R.

    2005-01-01

    This is the third study in a line of inquiry whose purpose has been to develop a theoretical model of selected extra musical variables' influence on solo and small-ensemble festival ratings. Authors of the second of these (Bergee & McWhirter, 2005) had used binomial logistic regression as the basis for their model-formulation strategy. Their…

  5. Ensemble Kalman filtering with one-step-ahead smoothing

    KAUST Repository

    Raboudi, Naila F.

    2018-01-11

    The ensemble Kalman filter (EnKF) is widely used for sequential data assimilation. It operates as a succession of forecast and analysis steps. In realistic large-scale applications, EnKFs are implemented with small ensembles and poorly known model error statistics. This limits their representativeness of the background error covariances and, thus, their performance. This work explores the efficiency of the one-step-ahead (OSA) smoothing formulation of the Bayesian filtering problem to enhance the data assimilation performance of EnKFs. Filtering with OSA smoothing introduces an updated step with future observations, conditioning the ensemble sampling with more information. This should provide an improved background ensemble in the analysis step, which may help to mitigate the suboptimal character of EnKF-based methods. Here, the authors demonstrate the efficiency of a stochastic EnKF with OSA smoothing for state estimation. They then introduce a deterministic-like EnKF-OSA based on the singular evolutive interpolated ensemble Kalman (SEIK) filter. The authors show that the proposed SEIK-OSA outperforms both SEIK, as it efficiently exploits the data twice, and the stochastic EnKF-OSA, as it avoids observational error undersampling. They present extensive assimilation results from numerical experiments conducted with the Lorenz-96 model to demonstrate SEIK-OSA’s capabilities.

  6. Ensemble data assimilation in the Red Sea: sensitivity to ensemble selection and atmospheric forcing

    KAUST Repository

    Toye, Habib; Zhan, Peng; Gopalakrishnan, Ganesh; Kartadikaria, Aditya R.; Huang, Huang; Knio, Omar; Hoteit, Ibrahim

    2017-01-01

    We present our efforts to build an ensemble data assimilation and forecasting system for the Red Sea. The system consists of the high-resolution Massachusetts Institute of Technology general circulation model (MITgcm) to simulate ocean circulation

  7. An ensemble Kalman filter for statistical estimation of physics constrained nonlinear regression models

    International Nuclear Information System (INIS)

    Harlim, John; Mahdi, Adam; Majda, Andrew J.

    2014-01-01

    A central issue in contemporary science is the development of nonlinear data driven statistical–dynamical models for time series of noisy partial observations from nature or a complex model. It has been established recently that ad-hoc quadratic multi-level regression models can have finite-time blow-up of statistical solutions and/or pathological behavior of their invariant measure. Recently, a new class of physics constrained nonlinear regression models were developed to ameliorate this pathological behavior. Here a new finite ensemble Kalman filtering algorithm is developed for estimating the state, the linear and nonlinear model coefficients, the model and the observation noise covariances from available partial noisy observations of the state. Several stringent tests and applications of the method are developed here. In the most complex application, the perfect model has 57 degrees of freedom involving a zonal (east–west) jet, two topographic Rossby waves, and 54 nonlinearly interacting Rossby waves; the perfect model has significant non-Gaussian statistics in the zonal jet with blocked and unblocked regimes and a non-Gaussian skewed distribution due to interaction with the other 56 modes. We only observe the zonal jet contaminated by noise and apply the ensemble filter algorithm for estimation. Numerically, we find that a three dimensional nonlinear stochastic model with one level of memory mimics the statistical effect of the other 56 modes on the zonal jet in an accurate fashion, including the skew non-Gaussian distribution and autocorrelation decay. On the other hand, a similar stochastic model with zero memory levels fails to capture the crucial non-Gaussian behavior of the zonal jet from the perfect 57-mode model

  8. Experimental study of starting plumes simulating cumulus cloud flows in the atmosphere

    Science.gov (United States)

    Subrahmanyam, Duvvuri; Sreenivas, K. R.; Bhat, G. S.; Diwan, S. S.; Narasimha, Roddam

    2009-11-01

    Turbulent jets and plumes subjected to off-source volumetric heating have been studied experimentally and numerically by Narasimha and co-workers and others over the past two decades. The off-source heating attempts to simulate the latent heat release that occurs in cumulus clouds on condensation of water vapour. This heat release plays a crucial role in determining the overall cloud shape among other things. Previous studies investigated steady state jets and plumes that had attained similarity upstream of heat injection. A better understanding and appreciation of the fluid dynamics of cumulus clouds should be possible by study of starting plumes. Experiments have been set up at JNCASR (Bangalore) using experimental techniques developed previously but incorporating various improvements. Till date, experiments have been performed on plumes at Re of 1000 and 2250, with three different heating levels in each case. Axial sections of the flow have been studied using standard PLIF techniques. The flow visualization provides us with data on the temporal evolution of the starting plume. It is observed that the broad nature of the effect of off-source heating on the starting plumes is generally consistent with the results obtained previously on steady state flows. More complete results and a critical discussion will be presented at the upcoming meeting.

  9. Ability of an ensemble of regional climate models to reproduce weather regimes over Europe-Atlantic during the period 1961-2000

    Science.gov (United States)

    Sanchez-Gomez, Emilia; Somot, S.; Déqué, M.

    2009-10-01

    One of the main concerns in regional climate modeling is to which extent limited-area regional climate models (RCM) reproduce the large-scale atmospheric conditions of their driving general circulation model (GCM). In this work we investigate the ability of a multi-model ensemble of regional climate simulations to reproduce the large-scale weather regimes of the driving conditions. The ensemble consists of a set of 13 RCMs on a European domain, driven at their lateral boundaries by the ERA40 reanalysis for the time period 1961-2000. Two sets of experiments have been completed with horizontal resolutions of 50 and 25 km, respectively. The spectral nudging technique has been applied to one of the models within the ensemble. The RCMs reproduce the weather regimes behavior in terms of composite pattern, mean frequency of occurrence and persistence reasonably well. The models also simulate well the long-term trends and the inter-annual variability of the frequency of occurrence. However, there is a non-negligible spread among the models which is stronger in summer than in winter. This spread is due to two reasons: (1) we are dealing with different models and (2) each RCM produces an internal variability. As far as the day-to-day weather regime history is concerned, the ensemble shows large discrepancies. At daily time scale, the model spread has also a seasonal dependence, being stronger in summer than in winter. Results also show that the spectral nudging technique improves the model performance in reproducing the large-scale of the driving field. In addition, the impact of increasing the number of grid points has been addressed by comparing the 25 and 50 km experiments. We show that the horizontal resolution does not affect significantly the model performance for large-scale circulation.

  10. Ability of an ensemble of regional climate models to reproduce weather regimes over Europe-Atlantic during the period 1961-2000

    Energy Technology Data Exchange (ETDEWEB)

    Somot, S.; Deque, M. [Meteo-France CNRM/GMGEC CNRS/GAME, Toulouse (France); Sanchez-Gomez, Emilia

    2009-10-15

    One of the main concerns in regional climate modeling is to which extent limited-area regional climate models (RCM) reproduce the large-scale atmospheric conditions of their driving general circulation model (GCM). In this work we investigate the ability of a multi-model ensemble of regional climate simulations to reproduce the large-scale weather regimes of the driving conditions. The ensemble consists of a set of 13 RCMs on a European domain, driven at their lateral boundaries by the ERA40 reanalysis for the time period 1961-2000. Two sets of experiments have been completed with horizontal resolutions of 50 and 25 km, respectively. The spectral nudging technique has been applied to one of the models within the ensemble. The RCMs reproduce the weather regimes behavior in terms of composite pattern, mean frequency of occurrence and persistence reasonably well. The models also simulate well the long-term trends and the inter-annual variability of the frequency of occurrence. However, there is a non-negligible spread among the models which is stronger in summer than in winter. This spread is due to two reasons: (1) we are dealing with different models and (2) each RCM produces an internal variability. As far as the day-to-day weather regime history is concerned, the ensemble shows large discrepancies. At daily time scale, the model spread has also a seasonal dependence, being stronger in summer than in winter. Results also show that the spectral nudging technique improves the model performance in reproducing the large-scale of the driving field. In addition, the impact of increasing the number of grid points has been addressed by comparing the 25 and 50 km experiments. We show that the horizontal resolution does not affect significantly the model performance for large-scale circulation. (orig.)

  11. Multimodel ensembles of wheat growth

    DEFF Research Database (Denmark)

    Martre, Pierre; Wallach, Daniel; Asseng, Senthold

    2015-01-01

    , but such studies are difficult to organize and have only recently begun. We report on the largest ensemble study to date, of 27 wheat models tested in four contrasting locations for their accuracy in simulating multiple crop growth and yield variables. The relative error averaged over models was 24...

  12. Quantum statistical model of nuclear multifragmentation in the canonical ensemble method

    International Nuclear Information System (INIS)

    Toneev, V.D.; Ploszajczak, M.; Parvant, A.S.; Toneev, V.D.; Parvant, A.S.

    1999-01-01

    A quantum statistical model of nuclear multifragmentation is proposed. The recurrence equation method used the canonical ensemble makes the model solvable and transparent to physical assumptions and allows to get results without involving the Monte Carlo technique. The model exhibits the first order phase transition. Quantum statistics effects are clearly seen on the microscopic level of occupation numbers but are almost washed out for global thermodynamic variables and the averaged observables studied. In the latter case, the recurrence relations for multiplicity distributions of both intermediate-mass and all fragments are derived and the specific changes in the shape of multiplicity distributions in the narrow region of the transition temperature is stressed. The temperature domain favorable to search for the HBT effect is noted. (authors)

  13. Quantum statistical model of nuclear multifragmentation in the canonical ensemble method

    Energy Technology Data Exchange (ETDEWEB)

    Toneev, V.D.; Ploszajczak, M. [Grand Accelerateur National d' Ions Lourds (GANIL), 14 - Caen (France); Parvant, A.S. [Institute of Applied Physics, Moldova Academy of Sciences, MD Moldova (Ukraine); Parvant, A.S. [Joint Institute for Nuclear Research, Bogoliubov Lab. of Theoretical Physics, Dubna (Russian Federation)

    1999-07-01

    A quantum statistical model of nuclear multifragmentation is proposed. The recurrence equation method used the canonical ensemble makes the model solvable and transparent to physical assumptions and allows to get results without involving the Monte Carlo technique. The model exhibits the first order phase transition. Quantum statistics effects are clearly seen on the microscopic level of occupation numbers but are almost washed out for global thermodynamic variables and the averaged observables studied. In the latter case, the recurrence relations for multiplicity distributions of both intermediate-mass and all fragments are derived and the specific changes in the shape of multiplicity distributions in the narrow region of the transition temperature is stressed. The temperature domain favorable to search for the HBT effect is noted. (authors)

  14. The spread amongst ENSEMBLES regional scenarios: regional climate models, driving general circulation models and interannual variability

    Energy Technology Data Exchange (ETDEWEB)

    Deque, M.; Somot, S. [Meteo-France, Centre National de Recherches Meteorologiques, CNRS/GAME, Toulouse Cedex 01 (France); Sanchez-Gomez, E. [Cerfacs/CNRS, SUC URA1875, Toulouse Cedex 01 (France); Goodess, C.M. [University of East Anglia, Climatic Research Unit, Norwich (United Kingdom); Jacob, D. [Max Planck Institute for Meteorology, Hamburg (Germany); Lenderink, G. [KNMI, Postbus 201, De Bilt (Netherlands); Christensen, O.B. [Danish Meteorological Institute, Copenhagen Oe (Denmark)

    2012-03-15

    Various combinations of thirteen regional climate models (RCM) and six general circulation models (GCM) were used in FP6-ENSEMBLES. The response to the SRES-A1B greenhouse gas concentration scenario over Europe, calculated as the difference between the 2021-2050 and the 1961-1990 means can be viewed as an expected value about which various uncertainties exist. Uncertainties are measured here by variance explained for temperature and precipitation changes over eight European sub-areas. Three sources of uncertainty can be evaluated from the ENSEMBLES database. Sampling uncertainty is due to the fact that the model climate is estimated as an average over a finite number of years (30) despite a non-negligible interannual variability. Regional model uncertainty is due to the fact that the RCMs use different techniques to discretize the equations and to represent sub-grid effects. Global model uncertainty is due to the fact that the RCMs have been driven by different GCMs. Two methods are presented to fill the many empty cells of the ENSEMBLES RCM x GCM matrix. The first one is based on the same approach as in FP5-PRUDENCE. The second one uses the concept of weather regimes to attempt to separate the contribution of the GCM and the RCM. The variance of the climate response is analyzed with respect to the contribution of the GCM and the RCM. The two filling methods agree that the main contributor to the spread is the choice of the GCM, except for summer precipitation where the choice of the RCM dominates the uncertainty. Of course the implication of the GCM to the spread varies with the region, being maximum in the South-western part of Europe, whereas the continental parts are more sensitive to the choice of the RCM. The third cause of spread is systematically the interannual variability. The total uncertainty about temperature is not large enough to mask the 2021-2050 response which shows a similar pattern to the one obtained for 2071-2100 in PRUDENCE. The uncertainty

  15. Spatial and temporal characteristics of heat waves over Central Europe in an ensemble of regional climate model simulations

    Czech Academy of Sciences Publication Activity Database

    Lhotka, Ondřej; Kyselý, Jan

    2015-01-01

    Roč. 45, č. 9 (2015), s. 2351-2366 ISSN 0930-7575 R&D Projects: GA ČR GAP209/10/2265 EU Projects: European Commission(XE) 505539 - ENSEMBLES Program:FP6 Institutional support: RVO:68378289 Keywords : heat waves * regional climate models * land–atmosphere coupling * spatial characteristics * interannual variability * ENSEMBLES project Subject RIV: DG - Athmosphere Sciences, Meteorology Impact factor: 4.708, year: 2015 http://link.springer.com/article/10.1007%2Fs00382-015-2475-7

  16. A multi-stage intelligent approach based on an ensemble of two-way interaction model for forecasting the global horizontal radiation of India

    International Nuclear Information System (INIS)

    Jiang, He; Dong, Yao; Xiao, Ling

    2017-01-01

    Highlights: • Ensemble learning system is proposed to forecast the global solar radiation. • LASSO is utilized as feature selection method for subset model. • GSO is used to select the weight vector aggregating the response of subset model. • A simple and efficient algorithm is designed based on thresholding function. • Theoretical analysis focusing on error rate is provided. - Abstract: Forecasting of effective solar irradiation has developed a huge interest in recent decades, mainly due to its various applications in grid connect photovoltaic installations. This paper develops and investigates an ensemble learning based multistage intelligent approach to forecast 5 days global horizontal radiation at four given locations of India. The two-way interaction model is considered with purpose of detecting the associated correlation between the features. The main structure of the novel method is the ensemble learning, which is based on Divide and Conquer principle, is applied to enhance the forecasting accuracy and model stability. An efficient feature selection method LASSO is performed in the input space with the regularization parameter selected by Cross-Validation. A weight vector which best represents the importance of each individual model in ensemble system is provided by glowworm swarm optimization. The combination of feature selection and parameter selection are helpful in creating the diversity of the ensemble learning. In order to illustrate the validity of the proposed method, the datasets at four different locations of the India are split into training and test datasets. The results of the real data experiments demonstrate the efficiency and efficacy of the proposed method comparing with other competitors.

  17. Entropy of network ensembles

    Science.gov (United States)

    Bianconi, Ginestra

    2009-03-01

    In this paper we generalize the concept of random networks to describe network ensembles with nontrivial features by a statistical mechanics approach. This framework is able to describe undirected and directed network ensembles as well as weighted network ensembles. These networks might have nontrivial community structure or, in the case of networks embedded in a given space, they might have a link probability with a nontrivial dependence on the distance between the nodes. These ensembles are characterized by their entropy, which evaluates the cardinality of networks in the ensemble. In particular, in this paper we define and evaluate the structural entropy, i.e., the entropy of the ensembles of undirected uncorrelated simple networks with given degree sequence. We stress the apparent paradox that scale-free degree distributions are characterized by having small structural entropy while they are so widely encountered in natural, social, and technological complex systems. We propose a solution to the paradox by proving that scale-free degree distributions are the most likely degree distribution with the corresponding value of the structural entropy. Finally, the general framework we present in this paper is able to describe microcanonical ensembles of networks as well as canonical or hidden-variable network ensembles with significant implications for the formulation of network-constructing algorithms.

  18. Ensembl variation resources

    Directory of Open Access Journals (Sweden)

    Marin-Garcia Pablo

    2010-05-01

    Full Text Available Abstract Background The maturing field of genomics is rapidly increasing the number of sequenced genomes and producing more information from those previously sequenced. Much of this additional information is variation data derived from sampling multiple individuals of a given species with the goal of discovering new variants and characterising the population frequencies of the variants that are already known. These data have immense value for many studies, including those designed to understand evolution and connect genotype to phenotype. Maximising the utility of the data requires that it be stored in an accessible manner that facilitates the integration of variation data with other genome resources such as gene annotation and comparative genomics. Description The Ensembl project provides comprehensive and integrated variation resources for a wide variety of chordate genomes. This paper provides a detailed description of the sources of data and the methods for creating the Ensembl variation databases. It also explores the utility of the information by explaining the range of query options available, from using interactive web displays, to online data mining tools and connecting directly to the data servers programmatically. It gives a good overview of the variation resources and future plans for expanding the variation data within Ensembl. Conclusions Variation data is an important key to understanding the functional and phenotypic differences between individuals. The development of new sequencing and genotyping technologies is greatly increasing the amount of variation data known for almost all genomes. The Ensembl variation resources are integrated into the Ensembl genome browser and provide a comprehensive way to access this data in the context of a widely used genome bioinformatics system. All Ensembl data is freely available at http://www.ensembl.org and from the public MySQL database server at ensembldb.ensembl.org.

  19. A novel hybrid ensemble learning paradigm for nuclear energy consumption forecasting

    International Nuclear Information System (INIS)

    Tang, Ling; Yu, Lean; Wang, Shuai; Li, Jianping; Wang, Shouyang

    2012-01-01

    Highlights: ► A hybrid ensemble learning paradigm integrating EEMD and LSSVR is proposed. ► The hybrid ensemble method is useful to predict time series with high volatility. ► The ensemble method can be used for both one-step and multi-step ahead forecasting. - Abstract: In this paper, a novel hybrid ensemble learning paradigm integrating ensemble empirical mode decomposition (EEMD) and least squares support vector regression (LSSVR) is proposed for nuclear energy consumption forecasting, based on the principle of “decomposition and ensemble”. This hybrid ensemble learning paradigm is formulated specifically to address difficulties in modeling nuclear energy consumption, which has inherently high volatility, complexity and irregularity. In the proposed hybrid ensemble learning paradigm, EEMD, as a competitive decomposition method, is first applied to decompose original data of nuclear energy consumption (i.e. a difficult task) into a number of independent intrinsic mode functions (IMFs) of original data (i.e. some relatively easy subtasks). Then LSSVR, as a powerful forecasting tool, is implemented to predict all extracted IMFs independently. Finally, these predicted IMFs are aggregated into an ensemble result as final prediction, using another LSSVR. For illustration and verification purposes, the proposed learning paradigm is used to predict nuclear energy consumption in China. Empirical results demonstrate that the novel hybrid ensemble learning paradigm can outperform some other popular forecasting models in both level prediction and directional forecasting, indicating that it is a promising tool to predict complex time series with high volatility and irregularity.

  20. Predicting Power Outages Using Multi-Model Ensemble Forecasts

    Science.gov (United States)

    Cerrai, D.; Anagnostou, E. N.; Yang, J.; Astitha, M.

    2017-12-01

    Power outages affect every year millions of people in the United States, affecting the economy and conditioning the everyday life. An Outage Prediction Model (OPM) has been developed at the University of Connecticut for helping utilities to quickly restore outages and to limit their adverse consequences on the population. The OPM, operational since 2015, combines several non-parametric machine learning (ML) models that use historical weather storm simulations and high-resolution weather forecasts, satellite remote sensing data, and infrastructure and land cover data to predict the number and spatial distribution of power outages. A new methodology, developed for improving the outage model performances by combining weather- and soil-related variables using three different weather models (WRF 3.7, WRF 3.8 and RAMS/ICLAMS), will be presented in this study. First, we will present a performance evaluation of each model variable, by comparing historical weather analyses with station data or reanalysis over the entire storm data set. Hence, each variable of the new outage model version is extracted from the best performing weather model for that variable, and sensitivity tests are performed for investigating the most efficient variable combination for outage prediction purposes. Despite that the final variables combination is extracted from different weather models, this ensemble based on multi-weather forcing and multi-statistical model power outage prediction outperforms the currently operational OPM version that is based on a single weather forcing variable (WRF 3.7), because each model component is the closest to the actual atmospheric state.

  1. NYYD Ensemble

    Index Scriptorium Estoniae

    2002-01-01

    NYYD Ensemble'i duost Traksmann - Lukk E.-S. Tüüri teosega "Symbiosis", mis on salvestatud ka hiljuti ilmunud NYYD Ensemble'i CDle. 2. märtsil Rakvere Teatri väikeses saalis ja 3. märtsil Rotermanni Soolalaos, kavas Tüür, Kaumann, Berio, Reich, Yun, Hauta-aho, Buckinx

  2. Refining Markov state models for conformational dynamics using ensemble-averaged data and time-series trajectories

    Science.gov (United States)

    Matsunaga, Y.; Sugita, Y.

    2018-06-01

    A data-driven modeling scheme is proposed for conformational dynamics of biomolecules based on molecular dynamics (MD) simulations and experimental measurements. In this scheme, an initial Markov State Model (MSM) is constructed from MD simulation trajectories, and then, the MSM parameters are refined using experimental measurements through machine learning techniques. The second step can reduce the bias of MD simulation results due to inaccurate force-field parameters. Either time-series trajectories or ensemble-averaged data are available as a training data set in the scheme. Using a coarse-grained model of a dye-labeled polyproline-20, we compare the performance of machine learning estimations from the two types of training data sets. Machine learning from time-series data could provide the equilibrium populations of conformational states as well as their transition probabilities. It estimates hidden conformational states in more robust ways compared to that from ensemble-averaged data although there are limitations in estimating the transition probabilities between minor states. We discuss how to use the machine learning scheme for various experimental measurements including single-molecule time-series trajectories.

  3. Surface drift prediction in the Adriatic Sea using hyper-ensemble statistics on atmospheric, ocean and wave models: Uncertainties and probability distribution areas

    Science.gov (United States)

    Rixen, M.; Ferreira-Coelho, E.; Signell, R.

    2008-01-01

    Despite numerous and regular improvements in underlying models, surface drift prediction in the ocean remains a challenging task because of our yet limited understanding of all processes involved. Hence, deterministic approaches to the problem are often limited by empirical assumptions on underlying physics. Multi-model hyper-ensemble forecasts, which exploit the power of an optimal local combination of available information including ocean, atmospheric and wave models, may show superior forecasting skills when compared to individual models because they allow for local correction and/or bias removal. In this work, we explore in greater detail the potential and limitations of the hyper-ensemble method in the Adriatic Sea, using a comprehensive surface drifter database. The performance of the hyper-ensembles and the individual models are discussed by analyzing associated uncertainties and probability distribution maps. Results suggest that the stochastic method may reduce position errors significantly for 12 to 72??h forecasts and hence compete with pure deterministic approaches. ?? 2007 NATO Undersea Research Centre (NURC).

  4. Lessons Learned from Assimilating Altimeter Data into a Coupled General Circulation Model with the GMAO Augmented Ensemble Kalman Filter

    Science.gov (United States)

    Keppenne, Christian; Vernieres, Guillaume; Rienecker, Michele; Jacob, Jossy; Kovach, Robin

    2011-01-01

    Satellite altimetry measurements have provided global, evenly distributed observations of the ocean surface since 1993. However, the difficulties introduced by the presence of model biases and the requirement that data assimilation systems extrapolate the sea surface height (SSH) information to the subsurface in order to estimate the temperature, salinity and currents make it difficult to optimally exploit these measurements. This talk investigates the potential of the altimetry data assimilation once the biases are accounted for with an ad hoc bias estimation scheme. Either steady-state or state-dependent multivariate background-error covariances from an ensemble of model integrations are used to address the problem of extrapolating the information to the sub-surface. The GMAO ocean data assimilation system applied to an ensemble of coupled model instances using the GEOS-5 AGCM coupled to MOM4 is used in the investigation. To model the background error covariances, the system relies on a hybrid ensemble approach in which a small number of dynamically evolved model trajectories is augmented on the one hand with past instances of the state vector along each trajectory and, on the other, with a steady state ensemble of error estimates from a time series of short-term model forecasts. A state-dependent adaptive error-covariance localization and inflation algorithm controls how the SSH information is extrapolated to the sub-surface. A two-step predictor corrector approach is used to assimilate future information. Independent (not-assimilated) temperature and salinity observations from Argo floats are used to validate the assimilation. A two-step projection method in which the system first calculates a SSH increment and then projects this increment vertically onto the temperature, salt and current fields is found to be most effective in reconstructing the sub-surface information. The performance of the system in reconstructing the sub-surface fields is particularly

  5. A method to encapsulate model structural uncertainty in ensemble projections of future climate: EPIC v1.0

    Science.gov (United States)

    Lewis, Jared; Bodeker, Greg E.; Kremser, Stefanie; Tait, Andrew

    2017-12-01

    A method, based on climate pattern scaling, has been developed to expand a small number of projections of fields of a selected climate variable (X) into an ensemble that encapsulates a wide range of indicative model structural uncertainties. The method described in this paper is referred to as the Ensemble Projections Incorporating Climate model uncertainty (EPIC) method. Each ensemble member is constructed by adding contributions from (1) a climatology derived from observations that represents the time-invariant part of the signal; (2) a contribution from forced changes in X, where those changes can be statistically related to changes in global mean surface temperature (Tglobal); and (3) a contribution from unforced variability that is generated by a stochastic weather generator. The patterns of unforced variability are also allowed to respond to changes in Tglobal. The statistical relationships between changes in X (and its patterns of variability) and Tglobal are obtained in a training phase. Then, in an implementation phase, 190 simulations of Tglobal are generated using a simple climate model tuned to emulate 19 different global climate models (GCMs) and 10 different carbon cycle models. Using the generated Tglobal time series and the correlation between the forced changes in X and Tglobal, obtained in the training phase, the forced change in the X field can be generated many times using Monte Carlo analysis. A stochastic weather generator is used to generate realistic representations of weather which include spatial coherence. Because GCMs and regional climate models (RCMs) are less likely to correctly represent unforced variability compared to observations, the stochastic weather generator takes as input measures of variability derived from observations, but also responds to forced changes in climate in a way that is consistent with the RCM projections. This approach to generating a large ensemble of projections is many orders of magnitude more

  6. Unsupervised Learning in an Ensemble of Spiking Neural Networks Mediated by ITDP.

    Directory of Open Access Journals (Sweden)

    Yoonsik Shim

    2016-10-01

    Full Text Available We propose a biologically plausible architecture for unsupervised ensemble learning in a population of spiking neural network classifiers. A mixture of experts type organisation is shown to be effective, with the individual classifier outputs combined via a gating network whose operation is driven by input timing dependent plasticity (ITDP. The ITDP gating mechanism is based on recent experimental findings. An abstract, analytically tractable model of the ITDP driven ensemble architecture is derived from a logical model based on the probabilities of neural firing events. A detailed analysis of this model provides insights that allow it to be extended into a full, biologically plausible, computational implementation of the architecture which is demonstrated on a visual classification task. The extended model makes use of a style of spiking network, first introduced as a model of cortical microcircuits, that is capable of Bayesian inference, effectively performing expectation maximization. The unsupervised ensemble learning mechanism, based around such spiking expectation maximization (SEM networks whose combined outputs are mediated by ITDP, is shown to perform the visual classification task well and to generalize to unseen data. The combined ensemble performance is significantly better than that of the individual classifiers, validating the ensemble architecture and learning mechanisms. The properties of the full model are analysed in the light of extensive experiments with the classification task, including an investigation into the influence of different input feature selection schemes and a comparison with a hierarchical STDP based ensemble architecture.

  7. Unsupervised Learning in an Ensemble of Spiking Neural Networks Mediated by ITDP.

    Science.gov (United States)

    Shim, Yoonsik; Philippides, Andrew; Staras, Kevin; Husbands, Phil

    2016-10-01

    We propose a biologically plausible architecture for unsupervised ensemble learning in a population of spiking neural network classifiers. A mixture of experts type organisation is shown to be effective, with the individual classifier outputs combined via a gating network whose operation is driven by input timing dependent plasticity (ITDP). The ITDP gating mechanism is based on recent experimental findings. An abstract, analytically tractable model of the ITDP driven ensemble architecture is derived from a logical model based on the probabilities of neural firing events. A detailed analysis of this model provides insights that allow it to be extended into a full, biologically plausible, computational implementation of the architecture which is demonstrated on a visual classification task. The extended model makes use of a style of spiking network, first introduced as a model of cortical microcircuits, that is capable of Bayesian inference, effectively performing expectation maximization. The unsupervised ensemble learning mechanism, based around such spiking expectation maximization (SEM) networks whose combined outputs are mediated by ITDP, is shown to perform the visual classification task well and to generalize to unseen data. The combined ensemble performance is significantly better than that of the individual classifiers, validating the ensemble architecture and learning mechanisms. The properties of the full model are analysed in the light of extensive experiments with the classification task, including an investigation into the influence of different input feature selection schemes and a comparison with a hierarchical STDP based ensemble architecture.

  8. Ensemble-free configurational temperature for spin systems

    Science.gov (United States)

    Palma, G.; Gutiérrez, G.; Davis, S.

    2016-12-01

    An estimator for the dynamical temperature in an arbitrary ensemble is derived in the framework of the conjugate variables theorem. We prove directly that its average indeed gives the inverse temperature and that it is independent of the ensemble. We test this estimator numerically by a simulation of the two-dimensional X Y model in the canonical ensemble. As this model is critical in the whole region of temperatures below the Berezinski-Kosterlitz-Thouless critical temperature TBKT, we use a generalization of Wolff's unicluster algorithm. The numerical results allow us to confirm the robustness of the analytical expression for the microscopic estimator of the temperature. This microscopic estimator has also the advantage that it gives a direct measure of the thermalization process and can be used to compute absolute errors associated with statistical fluctuations. In consequence, this estimator allows for a direct, absolute, and stringent test of the ergodicity of the underlying Markov process, which encodes the algorithm used in a numerical simulation.

  9. Diagnosis and Quantification of Climatic Sensitivity of Carbon Fluxes in Ensemble Global Ecosystem Models

    Science.gov (United States)

    Wang, W.; Hashimoto, H.; Milesi, C.; Nemani, R. R.; Myneni, R.

    2011-12-01

    Terrestrial ecosystem models are primary scientific tools to extrapolate our understanding of ecosystem functioning from point observations to global scales as well as from the past climatic conditions into the future. However, no model is nearly perfect and there are often considerable structural uncertainties existing between different models. Ensemble model experiments thus become a mainstream approach in evaluating the current status of global carbon cycle and predicting its future changes. A key task in such applications is to quantify the sensitivity of the simulated carbon fluxes to climate variations and changes. Here we develop a systematic framework to address this question solely by analyzing the inputs and the outputs from the models. The principle of our approach is to assume the long-term (~30 years) average of the inputs/outputs as a quasi-equlibrium of the climate-vegetation system while treat the anomalies of carbon fluxes as responses to climatic disturbances. In this way, the corresponding relationships can be largely linearized and analyzed using conventional time-series techniques. This method is used to characterize three major aspects of the vegetation models that are mostly important to global carbon cycle, namely the primary production, the biomass dynamics, and the ecosystem respiration. We apply this analytical framework to quantify the climatic sensitivity of an ensemble of models including CASA, Biome-BGC, LPJ as well as several other DGVMs from previous studies, all driven by the CRU-NCEP climate dataset. The detailed analysis results are reported in this study.

  10. Improving the ensemble optimization method through covariance matrix adaptation (CMA-EnOpt)

    NARCIS (Netherlands)

    Fonseca, R.M.; Leeuwenburgh, O.; Hof, P.M.J. van den; Jansen, J.D.

    2013-01-01

    Ensemble Optimization (EnOpt) is a rapidly emerging method for reservoir model based production optimization. EnOpt uses an ensemble of controls to approximate the gradient of the objective function with respect to the controls. Current implementations of EnOpt use a Gaussian ensemble with a

  11. Flexible implementation of the Ensemble Model with arbitrary order of moments

    Energy Technology Data Exchange (ETDEWEB)

    Ackermann, W. [Technische Universitaet Darmstadt, Institut fuer Theorie Elektromagnetischer Felder (TEMF), Schlossgartenstrasse 8, D 64289 Darmstadt (Germany)]. E-mail: ackermann@temf.tu-darmstadt.de; Weiland, T. [Technische Universitaet Darmstadt, Institut fuer Theorie Elektromagnetischer Felder (TEMF), Schlossgartenstrasse 8, D 64289 Darmstadt (Germany)]. E-mail: thomas.weiland@temf.tu-darmstadt.de

    2006-03-01

    The Ensemble Model takes advantage of an approach to express the phase space particle distribution function in terms of the first, second and higher order moments instead of considering individual particles. Based on a new flexible implementation, an arbitrary number of orders can be processed and automatically converted into proper update equations for the simulation program V-Code. In this paper the influence of the introduction of higher order moments on the beam dynamics simulation is investigated. The achievable accuracy and the numerical efforts are compared with the ones obtained from the lower order calculations.

  12. An Adaptive Approach to Mitigate Background Covariance Limitations in the Ensemble Kalman Filter

    KAUST Repository

    Song, Hajoon

    2010-07-01

    A new approach is proposed to address the background covariance limitations arising from undersampled ensembles and unaccounted model errors in the ensemble Kalman filter (EnKF). The method enhances the representativeness of the EnKF ensemble by augmenting it with new members chosen adaptively to add missing information that prevents the EnKF from fully fitting the data to the ensemble. The vectors to be added are obtained by back projecting the residuals of the observation misfits from the EnKF analysis step onto the state space. The back projection is done using an optimal interpolation (OI) scheme based on an estimated covariance of the subspace missing from the ensemble. In the experiments reported here, the OI uses a preselected stationary background covariance matrix, as in the hybrid EnKF–three-dimensional variational data assimilation (3DVAR) approach, but the resulting correction is included as a new ensemble member instead of being added to all existing ensemble members. The adaptive approach is tested with the Lorenz-96 model. The hybrid EnKF–3DVAR is used as a benchmark to evaluate the performance of the adaptive approach. Assimilation experiments suggest that the new adaptive scheme significantly improves the EnKF behavior when it suffers from small size ensembles and neglected model errors. It was further found to be competitive with the hybrid EnKF–3DVAR approach, depending on ensemble size and data coverage.

  13. 'Lazy' quantum ensembles

    International Nuclear Information System (INIS)

    Parfionov, George; Zapatrin, Roman

    2006-01-01

    We compare different strategies aimed to prepare an ensemble with a given density matrix ρ. Preparing the ensemble of eigenstates of ρ with appropriate probabilities can be treated as 'generous' strategy: it provides maximal accessible information about the state. Another extremity is the so-called 'Scrooge' ensemble, which is mostly stingy in sharing the information. We introduce 'lazy' ensembles which require minimal effort to prepare the density matrix by selecting pure states with respect to completely random choice. We consider two parties, Alice and Bob, playing a kind of game. Bob wishes to guess which pure state is prepared by Alice. His null hypothesis, based on the lack of any information about Alice's intention, is that Alice prepares any pure state with equal probability. Then, the average quantum state measured by Bob turns out to be ρ, and he has to make a new hypothesis about Alice's intention solely based on the information that the observed density matrix is ρ. The arising 'lazy' ensemble is shown to be the alternative hypothesis which minimizes type I error

  14. A CN-Based Ensembled Hydrological Model for Enhanced Watershed Runoff Prediction

    Directory of Open Access Journals (Sweden)

    Muhammad Ajmal

    2016-01-01

    Full Text Available A major structural inconsistency of the traditional curve number (CN model is its dependence on an unstable fixed initial abstraction, which normally results in sudden jumps in runoff estimation. Likewise, the lack of pre-storm soil moisture accounting (PSMA procedure is another inherent limitation of the model. To circumvent those problems, we used a variable initial abstraction after ensembling the traditional CN model and a French four-parameter (GR4J model to better quantify direct runoff from ungauged watersheds. To mimic the natural rainfall-runoff transformation at the watershed scale, our new parameterization designates intrinsic parameters and uses a simple structure. It exhibited more accurate and consistent results than earlier methods in evaluating data from 39 forest-dominated watersheds, both for small and large watersheds. In addition, based on different performance evaluation indicators, the runoff reproduction results show that the proposed model produced more consistent results for dry, normal, and wet watershed conditions than the other models used in this study.

  15. Sequential Ensembles Tolerant to Synthetic Aperture Radar (SAR Soil Moisture Retrieval Errors

    Directory of Open Access Journals (Sweden)

    Ju Hyoung Lee

    2016-04-01

    Full Text Available Due to complicated and undefined systematic errors in satellite observation, data assimilation integrating model states with satellite observations is more complicated than field measurements-based data assimilation at a local scale. In the case of Synthetic Aperture Radar (SAR soil moisture, the systematic errors arising from uncertainties in roughness conditions are significant and unavoidable, but current satellite bias correction methods do not resolve the problems very well. Thus, apart from the bias correction process of satellite observation, it is important to assess the inherent capability of satellite data assimilation in such sub-optimal but more realistic observational error conditions. To this end, time-evolving sequential ensembles of the Ensemble Kalman Filter (EnKF is compared with stationary ensemble of the Ensemble Optimal Interpolation (EnOI scheme that does not evolve the ensembles over time. As the sensitivity analysis demonstrated that the surface roughness is more sensitive to the SAR retrievals than measurement errors, it is a scope of this study to monitor how data assimilation alters the effects of roughness on SAR soil moisture retrievals. In results, two data assimilation schemes all provided intermediate values between SAR overestimation, and model underestimation. However, under the same SAR observational error conditions, the sequential ensembles approached a calibrated model showing the lowest Root Mean Square Error (RMSE, while the stationary ensemble converged towards the SAR observations exhibiting the highest RMSE. As compared to stationary ensembles, sequential ensembles have a better tolerance to SAR retrieval errors. Such inherent nature of EnKF suggests an operational merit as a satellite data assimilation system, due to the limitation of bias correction methods currently available.

  16. A multi-model ensemble of downscaled spatial climate change scenarios for the Dommel catchment, Western Europe

    NARCIS (Netherlands)

    Vliet, M.T.H. van; Blenkinsop, S.; Burton, A.; Harpham, C.; Broers, H.P.; Fowler, H.J.

    2012-01-01

    Regional or local scale hydrological impact studies require high resolution climate change scenarios which should incorporate some assessment of uncertainties in future climate projections. This paper describes a method used to produce a multi-model ensemble of multivariate weather simulations

  17. Interpolation of property-values between electron numbers is inconsistent with ensemble averaging

    Energy Technology Data Exchange (ETDEWEB)

    Miranda-Quintana, Ramón Alain [Laboratory of Computational and Theoretical Chemistry, Faculty of Chemistry, University of Havana, Havana (Cuba); Department of Chemistry and Chemical Biology, McMaster University, Hamilton, Ontario L8S 4M1 (Canada); Ayers, Paul W. [Department of Chemistry and Chemical Biology, McMaster University, Hamilton, Ontario L8S 4M1 (Canada)

    2016-06-28

    In this work we explore the physical foundations of models that study the variation of the ground state energy with respect to the number of electrons (E vs. N models), in terms of general grand-canonical (GC) ensemble formulations. In particular, we focus on E vs. N models that interpolate the energy between states with integer number of electrons. We show that if the interpolation of the energy corresponds to a GC ensemble, it is not differentiable. Conversely, if the interpolation is smooth, then it cannot be formulated as any GC ensemble. This proves that interpolation of electronic properties between integer electron numbers is inconsistent with any form of ensemble averaging. This emphasizes the role of derivative discontinuities and the critical role of a subsystem’s surroundings in determining its properties.

  18. Investigating the Variability in Cumulus Cloud Number as a Function of Subdomain Size and Organization using large-domain LES

    Science.gov (United States)

    Neggers, R.

    2017-12-01

    Recent advances in supercomputing have introduced a "grey zone" in the representation of cumulus convection in general circulation models, in which this process is partially resolved. Cumulus parameterizations need to be made scale-aware and scale-adaptive to be able to conceptually and practically deal with this situation. A potential way forward are schemes formulated in terms of discretized Cloud Size Densities, or CSDs. Advantages include i) the introduction of scale-awareness at the foundation of the scheme, and ii) the possibility to apply size-filtering of parameterized convective transport and clouds. The CSD is a new variable that requires closure; this concerns its shape, its range, but also variability in cloud number that can appear due to i) subsampling effects and ii) organization in a cloud field. The goal of this study is to gain insight by means of sub-domain analyses of various large-domain LES realizations of cumulus cloud populations. For a series of three-dimensional snapshots, each with a different degree of organization, the cloud size distribution is calculated in all subdomains, for a range of subdomain sizes. The standard deviation of the number of clouds of a certain size is found to decrease with the subdomain size, following a powerlaw scaling corresponding to an inverse-linear dependence. Cloud number variability also increases with cloud size; this reflects that subsampling affects the largest clouds first, due to their typically larger neighbor spacing. Rewriting this dependence in terms of two dimensionless groups, by dividing by cloud number and cloud size respectively, yields a data collapse. Organization in the cloud field is found to act on top of this primary dependence, by enhancing the cloud number variability at the smaller sizes. This behavior reflects that small clouds start to "live" on top of larger structures such as cold pools, favoring or inhibiting their formation (as illustrated by the attached figure of cloud mask

  19. Ensemble Kalman methods for inverse problems

    International Nuclear Information System (INIS)

    Iglesias, Marco A; Law, Kody J H; Stuart, Andrew M

    2013-01-01

    The ensemble Kalman filter (EnKF) was introduced by Evensen in 1994 (Evensen 1994 J. Geophys. Res. 99 10143–62) as a novel method for data assimilation: state estimation for noisily observed time-dependent problems. Since that time it has had enormous impact in many application domains because of its robustness and ease of implementation, and numerical evidence of its accuracy. In this paper we propose the application of an iterative ensemble Kalman method for the solution of a wide class of inverse problems. In this context we show that the estimate of the unknown function that we obtain with the ensemble Kalman method lies in a subspace A spanned by the initial ensemble. Hence the resulting error may be bounded above by the error found from the best approximation in this subspace. We provide numerical experiments which compare the error incurred by the ensemble Kalman method for inverse problems with the error of the best approximation in A, and with variants on traditional least-squares approaches, restricted to the subspace A. In so doing we demonstrate that the ensemble Kalman method for inverse problems provides a derivative-free optimization method with comparable accuracy to that achieved by traditional least-squares approaches. Furthermore, we also demonstrate that the accuracy is of the same order of magnitude as that achieved by the best approximation. Three examples are used to demonstrate these assertions: inversion of a compact linear operator; inversion of piezometric head to determine hydraulic conductivity in a Darcy model of groundwater flow; and inversion of Eulerian velocity measurements at positive times to determine the initial condition in an incompressible fluid. (paper)

  20. Uncertainty estimation and ensemble forecast with a chemistry-transport model - Application to air-quality modeling and simulation

    International Nuclear Information System (INIS)

    Mallet, Vivien

    2005-01-01

    The thesis deals with the evaluation of a chemistry-transport model, not primarily with classical comparisons to observations, but through the estimation of its a priori uncertainties due to input data, model formulation and numerical approximations. These three uncertainty sources are studied respectively on the basis of Monte Carlos simulations, multi-models simulations and numerical schemes inter-comparisons. A high uncertainty is found, in output ozone concentrations. In order to overtake the limitations due to the uncertainty, a solution is ensemble forecast. Through combinations of several models (up to forty-eight models) on the basis of past observations, the forecast can be significantly improved. The achievement of this work has also led to develop the innovative modelling-system Polyphemus. (author) [fr

  1. Multimodel hydrological ensemble forecasts for the Baskatong catchment in Canada using the TIGGE database.

    Science.gov (United States)

    Tito Arandia Martinez, Fabian

    2014-05-01

    Adequate uncertainty assessment is an important issue in hydrological modelling. An important issue for hydropower producers is to obtain ensemble forecasts which truly grasp the uncertainty linked to upcoming streamflows. If properly assessed, this uncertainty can lead to optimal reservoir management and energy production (ex. [1]). The meteorological inputs to the hydrological model accounts for an important part of the total uncertainty in streamflow forecasting. Since the creation of the THORPEX initiative and the TIGGE database, access to meteorological ensemble forecasts from nine agencies throughout the world have been made available. This allows for hydrological ensemble forecasts based on multiple meteorological ensemble forecasts. Consequently, both the uncertainty linked to the architecture of the meteorological model and the uncertainty linked to the initial condition of the atmosphere can be accounted for. The main objective of this work is to show that a weighted combination of meteorological ensemble forecasts based on different atmospheric models can lead to improved hydrological ensemble forecasts, for horizons from one to ten days. This experiment is performed for the Baskatong watershed, a head subcatchment of the Gatineau watershed in the province of Quebec, in Canada. Baskatong watershed is of great importance for hydro-power production, as it comprises the main reservoir for the Gatineau watershed, on which there are six hydropower plants managed by Hydro-Québec. Since the 70's, they have been using pseudo ensemble forecast based on deterministic meteorological forecasts to which variability derived from past forecasting errors is added. We use a combination of meteorological ensemble forecasts from different models (precipitation and temperature) as the main inputs for hydrological model HSAMI ([2]). The meteorological ensembles from eight of the nine agencies available through TIGGE are weighted according to their individual performance and

  2. Fire spread estimation on forest wildfire using ensemble kalman filter

    Science.gov (United States)

    Syarifah, Wardatus; Apriliani, Erna

    2018-04-01

    Wildfire is one of the most frequent disasters in the world, for example forest wildfire, causing population of forest decrease. Forest wildfire, whether naturally occurring or prescribed, are potential risks for ecosystems and human settlements. These risks can be managed by monitoring the weather, prescribing fires to limit available fuel, and creating firebreaks. With computer simulations we can predict and explore how fires may spread. The model of fire spread on forest wildfire was established to determine the fire properties. The fire spread model is prepared based on the equation of the diffusion reaction model. There are many methods to estimate the spread of fire. The Kalman Filter Ensemble Method is a modified estimation method of the Kalman Filter algorithm that can be used to estimate linear and non-linear system models. In this research will apply Ensemble Kalman Filter (EnKF) method to estimate the spread of fire on forest wildfire. Before applying the EnKF method, the fire spread model will be discreted using finite difference method. At the end, the analysis obtained illustrated by numerical simulation using software. The simulation results show that the Ensemble Kalman Filter method is closer to the system model when the ensemble value is greater, while the covariance value of the system model and the smaller the measurement.

  3. Imprinting and recalling cortical ensembles.

    Science.gov (United States)

    Carrillo-Reid, Luis; Yang, Weijian; Bando, Yuki; Peterka, Darcy S; Yuste, Rafael

    2016-08-12

    Neuronal ensembles are coactive groups of neurons that may represent building blocks of cortical circuits. These ensembles could be formed by Hebbian plasticity, whereby synapses between coactive neurons are strengthened. Here we report that repetitive activation with two-photon optogenetics of neuronal populations from ensembles in the visual cortex of awake mice builds neuronal ensembles that recur spontaneously after being imprinted and do not disrupt preexisting ones. Moreover, imprinted ensembles can be recalled by single- cell stimulation and remain coactive on consecutive days. Our results demonstrate the persistent reconfiguration of cortical circuits by two-photon optogenetics into neuronal ensembles that can perform pattern completion. Copyright © 2016, American Association for the Advancement of Science.

  4. Verification of Ensemble Forecasts for the New York City Operations Support Tool

    Science.gov (United States)

    Day, G.; Schaake, J. C.; Thiemann, M.; Draijer, S.; Wang, L.

    2012-12-01

    The New York City water supply system operated by the Department of Environmental Protection (DEP) serves nine million people. It covers 2,000 square miles of portions of the Catskill, Delaware, and Croton watersheds, and it includes nineteen reservoirs and three controlled lakes. DEP is developing an Operations Support Tool (OST) to support its water supply operations and planning activities. OST includes historical and real-time data, a model of the water supply system complete with operating rules, and lake water quality models developed to evaluate alternatives for managing turbidity in the New York City Catskill reservoirs. OST will enable DEP to manage turbidity in its unfiltered system while satisfying its primary objective of meeting the City's water supply needs, in addition to considering secondary objectives of maintaining ecological flows, supporting fishery and recreation releases, and mitigating downstream flood peaks. The current version of OST relies on statistical forecasts of flows in the system based on recent observed flows. To improve short-term decision making, plans are being made to transition to National Weather Service (NWS) ensemble forecasts based on hydrologic models that account for short-term weather forecast skill, longer-term climate information, as well as the hydrologic state of the watersheds and recent observed flows. To ensure that the ensemble forecasts are unbiased and that the ensemble spread reflects the actual uncertainty of the forecasts, a statistical model has been developed to post-process the NWS ensemble forecasts to account for hydrologic model error as well as any inherent bias and uncertainty in initial model states, meteorological data and forecasts. The post-processor is designed to produce adjusted ensemble forecasts that are consistent with the DEP historical flow sequences that were used to develop the system operating rules. A set of historical hindcasts that is representative of the real-time ensemble

  5. Tweet-based Target Market Classification Using Ensemble Method

    Directory of Open Access Journals (Sweden)

    Muhammad Adi Khairul Anshary

    2016-09-01

    Full Text Available Target market classification is aimed at focusing marketing activities on the right targets. Classification of target markets can be done through data mining and by utilizing data from social media, e.g. Twitter. The end result of data mining are learning models that can classify new data. Ensemble methods can improve the accuracy of the models and therefore provide better results. In this study, classification of target markets was conducted on a dataset of 3000 tweets in order to extract features. Classification models were constructed to manipulate the training data using two ensemble methods (bagging and boosting. To investigate the effectiveness of the ensemble methods, this study used the CART (classification and regression tree algorithm for comparison. Three categories of consumer goods (computers, mobile phones and cameras and three categories of sentiments (positive, negative and neutral were classified towards three target-market categories. Machine learning was performed using Weka 3.6.9. The results of the test data showed that the bagging method improved the accuracy of CART with 1.9% (to 85.20%. On the other hand, for sentiment classification, the ensemble methods were not successful in increasing the accuracy of CART. The results of this study may be taken into consideration by companies who approach their customers through social media, especially Twitter.

  6. World Music Ensemble: Kulintang

    Science.gov (United States)

    Beegle, Amy C.

    2012-01-01

    As instrumental world music ensembles such as steel pan, mariachi, gamelan and West African drums are becoming more the norm than the exception in North American school music programs, there are other world music ensembles just starting to gain popularity in particular parts of the United States. The kulintang ensemble, a drum and gong ensemble…

  7. A One-Step-Ahead Smoothing-Based Joint Ensemble Kalman Filter for State-Parameter Estimation of Hydrological Models

    KAUST Repository

    El Gharamti, Mohamad; Ait-El-Fquih, Boujemaa; Hoteit, Ibrahim

    2015-01-01

    The ensemble Kalman filter (EnKF) recursively integrates field data into simulation models to obtain a better characterization of the model’s state and parameters. These are generally estimated following a state-parameters joint augmentation

  8. Clustered iterative stochastic ensemble method for multi-modal calibration of subsurface flow models

    KAUST Repository

    Elsheikh, Ahmed H.; Wheeler, Mary Fanett; Hoteit, Ibrahim

    2013-01-01

    estimation. ISEM is augmented with a clustering step based on k-means algorithm to form sub-ensembles. These sub-ensembles are used to explore different parts of the search space. Clusters are updated at regular intervals of the algorithm to allow merging

  9. A mass-flux cumulus parameterization scheme for large-scale models: description and test with observations

    Energy Technology Data Exchange (ETDEWEB)

    Wu, Tongwen [China Meteorological Administration (CMA), National Climate Center (Beijing Climate Center), Beijing (China)

    2012-02-15

    A simple mass-flux cumulus parameterization scheme suitable for large-scale atmospheric models is presented. The scheme is based on a bulk-cloud approach and has the following properties: (1) Deep convection is launched at the level of maximum moist static energy above the top of the boundary layer. It is triggered if there is positive convective available potential energy (CAPE) and relative humidity of the air at the lifting level of convection cloud is greater than 75%; (2) Convective updrafts for mass, dry static energy, moisture, cloud liquid water and momentum are parameterized by a one-dimensional entrainment/detrainment bulk-cloud model. The lateral entrainment of the environmental air into the unstable ascending parcel before it rises to the lifting condensation level is considered. The entrainment/detrainment amount for the updraft cloud parcel is separately determined according to the increase/decrease of updraft parcel mass with altitude, and the mass change for the adiabatic ascent cloud parcel with altitude is derived from a total energy conservation equation of the whole adiabatic system in which involves the updraft cloud parcel and the environment; (3) The convective downdraft is assumed saturated and originated from the level of minimum environmental saturated equivalent potential temperature within the updraft cloud; (4) The mass flux at the base of convective cloud is determined by a closure scheme suggested by Zhang (J Geophys Res 107(D14)), in which the increase/decrease of CAPE due to changes of the thermodynamic states in the free troposphere resulting from convection approximately balances the decrease/increase resulting from large-scale processes. Evaluation of the proposed convection scheme is performed by using a single column model (SCM) forced by the Atmospheric Radiation Measurement Program's (ARM) summer 1995 and 1997 Intensive Observing Period (IOP) observations, and field observations from the Global Atmospheric Research

  10. Multi-model ensemble projections of European river floods and high flows at 1.5, 2, and 3 degrees global warming

    Science.gov (United States)

    Thober, Stephan; Kumar, Rohini; Wanders, Niko; Marx, Andreas; Pan, Ming; Rakovec, Oldrich; Samaniego, Luis; Sheffield, Justin; Wood, Eric F.; Zink, Matthias

    2018-01-01

    Severe river floods often result in huge economic losses and fatalities. Since 1980, almost 1500 such events have been reported in Europe. This study investigates climate change impacts on European floods under 1.5, 2, and 3 K global warming. The impacts are assessed employing a multi-model ensemble containing three hydrologic models (HMs: mHM, Noah-MP, PCR-GLOBWB) forced by five CMIP5 general circulation models (GCMs) under three Representative Concentration Pathways (RCPs 2.6, 6.0, and 8.5). This multi-model ensemble is unprecedented with respect to the combination of its size (45 realisations) and its spatial resolution, which is 5 km over the entirety of Europe. Climate change impacts are quantified for high flows and flood events, represented by 10% exceedance probability and annual maxima of daily streamflow, respectively. The multi-model ensemble points to the Mediterranean region as a hotspot of changes with significant decrements in high flows from -11% at 1.5 K up to -30% at 3 K global warming mainly resulting from reduced precipitation. Small changes (impacts of global warming could be similar under 1.5 K and 2 K global warming, but have to account for significantly higher changes under 3 K global warming.

  11. The Advantage of Using International Multimodel Ensemble for Seasonal Precipitation Forecast over Israel

    Directory of Open Access Journals (Sweden)

    Amir Givati

    2017-01-01

    Full Text Available This study analyzes the results of monthly and seasonal precipitation forecasting from seven different global climate forecast models for major basins in Israel within October–April 1982–2010. The six National Multimodel Ensemble (NMME models and the ECMWF seasonal model were used to calculate an International Multimodel Ensemble (IMME. The study presents the performance of both monthly and seasonal predictions of precipitation accumulated over three months, with respect to different lead times for the ensemble mean values, one per individual model. Additionally, we analyzed the performance of different combinations of models. We present verification of seasonal forecasting using real forecasts, focusing on a small domain characterized by complex terrain, high annual precipitation variability, and a sharp precipitation gradient from west to east as well as from south to north. The results in this study show that, in general, the monthly analysis does not provide very accurate results, even when using the IMME for one-month lead time. We found that the IMME outperformed any single model prediction. Our analysis indicates that the optimal combinations with the high correlation values contain at least three models. Moreover, prediction with larger number of models in the ensemble produces more robust predictions. The results obtained in this study highlight the advantages of using an ensemble of global models over single models for small domain.

  12. Mass Conservation and Positivity Preservation with Ensemble-type Kalman Filter Algorithms

    Science.gov (United States)

    Janjic, Tijana; McLaughlin, Dennis B.; Cohn, Stephen E.; Verlaan, Martin

    2013-01-01

    Maintaining conservative physical laws numerically has long been recognized as being important in the development of numerical weather prediction (NWP) models. In the broader context of data assimilation, concerted efforts to maintain conservation laws numerically and to understand the significance of doing so have begun only recently. In order to enforce physically based conservation laws of total mass and positivity in the ensemble Kalman filter, we incorporate constraints to ensure that the filter ensemble members and the ensemble mean conserve mass and remain nonnegative through measurement updates. We show that the analysis steps of ensemble transform Kalman filter (ETKF) algorithm and ensemble Kalman filter algorithm (EnKF) can conserve the mass integral, but do not preserve positivity. Further, if localization is applied or if negative values are simply set to zero, then the total mass is not conserved either. In order to ensure mass conservation, a projection matrix that corrects for localization effects is constructed. In order to maintain both mass conservation and positivity preservation through the analysis step, we construct a data assimilation algorithms based on quadratic programming and ensemble Kalman filtering. Mass and positivity are both preserved by formulating the filter update as a set of quadratic programming problems that incorporate constraints. Some simple numerical experiments indicate that this approach can have a significant positive impact on the posterior ensemble distribution, giving results that are more physically plausible both for individual ensemble members and for the ensemble mean. The results show clear improvements in both analyses and forecasts, particularly in the presence of localized features. Behavior of the algorithm is also tested in presence of model error.

  13. Improving sub-pixel imperviousness change prediction by ensembling heterogeneous non-linear regression models

    Directory of Open Access Journals (Sweden)

    Drzewiecki Wojciech

    2016-12-01

    Full Text Available In this work nine non-linear regression models were compared for sub-pixel impervious surface area mapping from Landsat images. The comparison was done in three study areas both for accuracy of imperviousness coverage evaluation in individual points in time and accuracy of imperviousness change assessment. The performance of individual machine learning algorithms (Cubist, Random Forest, stochastic gradient boosting of regression trees, k-nearest neighbors regression, random k-nearest neighbors regression, Multivariate Adaptive Regression Splines, averaged neural networks, and support vector machines with polynomial and radial kernels was also compared with the performance of heterogeneous model ensembles constructed from the best models trained using particular techniques.

  14. Exploiting ensemble learning for automatic cataract detection and grading.

    Science.gov (United States)

    Yang, Ji-Jiang; Li, Jianqiang; Shen, Ruifang; Zeng, Yang; He, Jian; Bi, Jing; Li, Yong; Zhang, Qinyan; Peng, Lihui; Wang, Qing

    2016-02-01

    Cataract is defined as a lenticular opacity presenting usually with poor visual acuity. It is one of the most common causes of visual impairment worldwide. Early diagnosis demands the expertise of trained healthcare professionals, which may present a barrier to early intervention due to underlying costs. To date, studies reported in the literature utilize a single learning model for retinal image classification in grading cataract severity. We present an ensemble learning based approach as a means to improving diagnostic accuracy. Three independent feature sets, i.e., wavelet-, sketch-, and texture-based features, are extracted from each fundus image. For each feature set, two base learning models, i.e., Support Vector Machine and Back Propagation Neural Network, are built. Then, the ensemble methods, majority voting and stacking, are investigated to combine the multiple base learning models for final fundus image classification. Empirical experiments are conducted for cataract detection (two-class task, i.e., cataract or non-cataractous) and cataract grading (four-class task, i.e., non-cataractous, mild, moderate or severe) tasks. The best performance of the ensemble classifier is 93.2% and 84.5% in terms of the correct classification rates for cataract detection and grading tasks, respectively. The results demonstrate that the ensemble classifier outperforms the single learning model significantly, which also illustrates the effectiveness of the proposed approach. Copyright © 2015 Elsevier Ireland Ltd. All rights reserved.

  15. Ensemble Forecasts with Useful Skill-Spread Relationships for African meningitis and Asia Streamflow Forecasting

    Science.gov (United States)

    Hopson, T. M.

    2014-12-01

    One potential benefit of an ensemble prediction system (EPS) is its capacity to forecast its own forecast error through the ensemble spread-error relationship. In practice, an EPS is often quite limited in its ability to represent the variable expectation of forecast error through the variable dispersion of the ensemble, and perhaps more fundamentally, in its ability to provide enough variability in the ensembles dispersion to make the skill-spread relationship even potentially useful (irrespective of whether the EPS is well-calibrated or not). In this paper we examine the ensemble skill-spread relationship of an ensemble constructed from the TIGGE (THORPEX Interactive Grand Global Ensemble) dataset of global forecasts and a combination of multi-model and post-processing approaches. Both of the multi-model and post-processing techniques are based on quantile regression (QR) under a step-wise forward selection framework leading to ensemble forecasts with both good reliability and sharpness. The methodology utilizes the ensemble's ability to self-diagnose forecast instability to produce calibrated forecasts with informative skill-spread relationships. A context for these concepts is provided by assessing the constructed ensemble in forecasting district-level humidity impacting the incidence of meningitis in the meningitis belt of Africa, and in forecasting flooding events in the Brahmaputra and Ganges basins of South Asia.

  16. A method to encapsulate model structural uncertainty in ensemble projections of future climate: EPIC v1.0

    Directory of Open Access Journals (Sweden)

    J. Lewis

    2017-12-01

    Full Text Available A method, based on climate pattern scaling, has been developed to expand a small number of projections of fields of a selected climate variable (X into an ensemble that encapsulates a wide range of indicative model structural uncertainties. The method described in this paper is referred to as the Ensemble Projections Incorporating Climate model uncertainty (EPIC method. Each ensemble member is constructed by adding contributions from (1 a climatology derived from observations that represents the time-invariant part of the signal; (2 a contribution from forced changes in X, where those changes can be statistically related to changes in global mean surface temperature (Tglobal; and (3 a contribution from unforced variability that is generated by a stochastic weather generator. The patterns of unforced variability are also allowed to respond to changes in Tglobal. The statistical relationships between changes in X (and its patterns of variability and Tglobal are obtained in a training phase. Then, in an implementation phase, 190 simulations of Tglobal are generated using a simple climate model tuned to emulate 19 different global climate models (GCMs and 10 different carbon cycle models. Using the generated Tglobal time series and the correlation between the forced changes in X and Tglobal, obtained in the training phase, the forced change in the X field can be generated many times using Monte Carlo analysis. A stochastic weather generator is used to generate realistic representations of weather which include spatial coherence. Because GCMs and regional climate models (RCMs are less likely to correctly represent unforced variability compared to observations, the stochastic weather generator takes as input measures of variability derived from observations, but also responds to forced changes in climate in a way that is consistent with the RCM projections. This approach to generating a large ensemble of projections is many orders of

  17. Thermodynamics and kinetics of a molecular motor ensemble.

    Science.gov (United States)

    Baker, J E; Thomas, D D

    2000-10-01

    If, contrary to conventional models of muscle, it is assumed that molecular forces equilibrate among rather than within molecular motors, an equation of state and an expression for energy output can be obtained for a near-equilibrium, coworking ensemble of molecular motors. These equations predict clear, testable relationships between motor structure, motor biochemistry, and ensemble motor function, and we discuss these relationships in the context of various experimental studies. In this model, net work by molecular motors is performed with the relaxation of a near-equilibrium intermediate step in a motor-catalyzed reaction. The free energy available for work is localized to this step, and the rate at which this free energy is transferred to work is accelerated by the free energy of a motor-catalyzed reaction. This thermodynamic model implicitly deals with a motile cell system as a dynamic network (not a rigid lattice) of molecular motors within which the mechanochemistry of one motor influences and is influenced by the mechanochemistry of other motors in the ensemble.

  18. Activation of PKA, p38 MAPK and ERK1/2 by gonadotropins in cumulus cells is critical for induction of EGF-like factor and TACE/ADAM17 gene expression during in vitro maturation of porcine COCs

    Directory of Open Access Journals (Sweden)

    Yamashita Yasuhisa

    2009-12-01

    Full Text Available Abstract Objectives During ovulation, it has been shown that LH stimulus induces the expression of numerous genes via PKA, p38 MAPK, PI3K and ERK1/2 in cumulus cells and granulosa cells. Our recent study showed that EGF-like factor and its protease (TACE/ADAM17 are required for the activation of EGF receptor (EGFR, cumulus expansion and oocyte maturation of porcine cumulus-oocyte complexes (COCs. In the present study, we investigated which signaling pathways are involved in the gene expression of EGF-like factor and in Tace/Adam17 expression in cumulus cells of porcine COC during in vitro maturation. Methods Areg, Ereg, Tace/Adam17, Has2, Tnfaip6 and Ptgs2 mRNA expressions were detected in cumulus cells of porcine COCs by RT-PCR. Protein level of ERK1/2 phosphorylation in cultured cumulus cells was analyzed by westernblotting. COCs were visualized using a phase-contrast microscope. Results When COCs were cultured with FSH and LH up to 2.5 h, Areg, Ereg and Tace/Adam17 mRNA were expressed in cumulus cells of COCs. Areg, Ereg and Tace/Adam17 gene expressions were not suppressed by PI3K inhibitor (LY294002, whereas PKA inhibitor (H89, p38 MAPK inhibitor (SB203580 and MEK inhibitor (U0126 significantly suppressed these gene expressions. Phosphorylation of ERK1/2, and the gene expression of Has2, Tnfaip6 and Ptgs2 were also suppressed by H89, SB203580 and U0126, however, these negative effects were overcome by the addition of EGF to the medium, but not in the U0126 treatment group. Conclusion The results showed that PKA, p38 MAPK and ERK1/2 positively controlled the expression of EGF-like factor and TACE/ADMA17, the latter of which impacts the cumulus expansion and oocyte maturation of porcine COCs via the EGFR-ERK1/2 pathway in cumulus cells.

  19. WE-E-BRE-05: Ensemble of Graphical Models for Predicting Radiation Pneumontis Risk

    Energy Technology Data Exchange (ETDEWEB)

    Lee, S; Ybarra, N; Jeyaseelan, K; El Naqa, I [McGill University, Montreal, Quebec (Canada); Faria, S; Kopek, N [Montreal General Hospital, Montreal, Quebec (Canada)

    2014-06-15

    Purpose: We propose a prior knowledge-based approach to construct an interaction graph of biological and dosimetric radiation pneumontis (RP) covariates for the purpose of developing a RP risk classifier. Methods: We recruited 59 NSCLC patients who received curative radiotherapy with minimum 6 month follow-up. 16 RP events was observed (CTCAE grade ≥2). Blood serum was collected from every patient before (pre-RT) and during RT (mid-RT). From each sample the concentration of the following five candidate biomarkers were taken as covariates: alpha-2-macroglobulin (α2M), angiotensin converting enzyme (ACE), transforming growth factor β (TGF-β), interleukin-6 (IL-6), and osteopontin (OPN). Dose-volumetric parameters were also included as covariates. The number of biological and dosimetric covariates was reduced by a variable selection scheme implemented by L1-regularized logistic regression (LASSO). Posterior probability distribution of interaction graphs between the selected variables was estimated from the data under the literature-based prior knowledge to weight more heavily the graphs that contain the expected associations. A graph ensemble was formed by averaging the most probable graphs weighted by their posterior, creating a Bayesian Network (BN)-based RP risk classifier. Results: The LASSO selected the following 7 RP covariates: (1) pre-RT concentration level of α2M, (2) α2M level mid- RT/pre-RT, (3) pre-RT IL6 level, (4) IL6 level mid-RT/pre-RT, (5) ACE mid-RT/pre-RT, (6) PTV volume, and (7) mean lung dose (MLD). The ensemble BN model achieved the maximum sensitivity/specificity of 81%/84% and outperformed univariate dosimetric predictors as shown by larger AUC values (0.78∼0.81) compared with MLD (0.61), V20 (0.65) and V30 (0.70). The ensembles obtained by incorporating the prior knowledge improved classification performance for the ensemble size 5∼50. Conclusion: We demonstrated a probabilistic ensemble method to detect robust associations between

  20. Assessing uncertainties of water footprints using an ensemble of crop growth models on winter wheat

    Czech Academy of Sciences Publication Activity Database

    Kersebaum, K. C.; Kroes, J.; Gobin, A.; Takáč, J.; Hlavinka, Petr; Trnka, Miroslav; Ventrella, D.; Giglio, L.; Ferrise, R.; Moriondo, M.; Marta, A. D.; Luo, Q.; Eitzinger, Josef; Mirschel, W.; Weigel, H-J.; Manderscheid, R.; Hofmann, M.; Nejedlík, P.; Hösch, J.

    2016-01-01

    Roč. 8, č. 12 (2016), č. článku 571. ISSN 2073-4441 R&D Projects: GA MŠk(CZ) LO1415; GA MŠk(CZ) LD13030 Institutional support: RVO:67179843 Keywords : water footprint * uncertainty * model ensemble * wheat Subject RIV: DA - Hydrology ; Limnology Impact factor: 1.832, year: 2016

  1. Can decadal climate predictions be improved by ocean ensemble dispersion filtering?

    Science.gov (United States)

    Kadow, C.; Illing, S.; Kröner, I.; Ulbrich, U.; Cubasch, U.

    2017-12-01

    Decadal predictions by Earth system models aim to capture the state and phase of the climate several years inadvance. Atmosphere-ocean interaction plays an important role for such climate forecasts. While short-termweather forecasts represent an initial value problem and long-term climate projections represent a boundarycondition problem, the decadal climate prediction falls in-between these two time scales. The ocean memorydue to its heat capacity holds big potential skill on the decadal scale. In recent years, more precise initializationtechniques of coupled Earth system models (incl. atmosphere and ocean) have improved decadal predictions.Ensembles are another important aspect. Applying slightly perturbed predictions results in an ensemble. Insteadof using and evaluating one prediction, but the whole ensemble or its ensemble average, improves a predictionsystem. However, climate models in general start losing the initialized signal and its predictive skill from oneforecast year to the next. Here we show that the climate prediction skill of an Earth system model can be improvedby a shift of the ocean state toward the ensemble mean of its individual members at seasonal intervals. Wefound that this procedure, called ensemble dispersion filter, results in more accurate results than the standarddecadal prediction. Global mean and regional temperature, precipitation, and winter cyclone predictions showan increased skill up to 5 years ahead. Furthermore, the novel technique outperforms predictions with largerensembles and higher resolution. Our results demonstrate how decadal climate predictions benefit from oceanensemble dispersion filtering toward the ensemble mean. This study is part of MiKlip (fona-miklip.de) - a major project on decadal climate prediction in Germany.We focus on the Max-Planck-Institute Earth System Model using the low-resolution version (MPI-ESM-LR) andMiKlip's basic initialization strategy as in 2017 published decadal climate forecast: http

  2. Using ensemble models to identify and apportion heavy metal pollution sources in agricultural soils on a local scale.

    Science.gov (United States)

    Wang, Qi; Xie, Zhiyi; Li, Fangbai

    2015-11-01

    This study aims to identify and apportion multi-source and multi-phase heavy metal pollution from natural and anthropogenic inputs using ensemble models that include stochastic gradient boosting (SGB) and random forest (RF) in agricultural soils on the local scale. The heavy metal pollution sources were quantitatively assessed, and the results illustrated the suitability of the ensemble models for the assessment of multi-source and multi-phase heavy metal pollution in agricultural soils on the local scale. The results of SGB and RF consistently demonstrated that anthropogenic sources contributed the most to the concentrations of Pb and Cd in agricultural soils in the study region and that SGB performed better than RF. Copyright © 2015 Elsevier Ltd. All rights reserved.

  3. An ensemble based nonlinear orthogonal matching pursuit algorithm for sparse history matching of reservoir models

    KAUST Repository

    Fsheikh, Ahmed H.

    2013-01-01

    A nonlinear orthogonal matching pursuit (NOMP) for sparse calibration of reservoir models is presented. Sparse calibration is a challenging problem as the unknowns are both the non-zero components of the solution and their associated weights. NOMP is a greedy algorithm that discovers at each iteration the most correlated components of the basis functions with the residual. The discovered basis (aka support) is augmented across the nonlinear iterations. Once the basis functions are selected from the dictionary, the solution is obtained by applying Tikhonov regularization. The proposed algorithm relies on approximate gradient estimation using an iterative stochastic ensemble method (ISEM). ISEM utilizes an ensemble of directional derivatives to efficiently approximate gradients. In the current study, the search space is parameterized using an overcomplete dictionary of basis functions built using the K-SVD algorithm.

  4. Performance of a multi-RCM ensemble for South Eastern South America

    Energy Technology Data Exchange (ETDEWEB)

    Carril, A.F.; Menendez, C.G.; Salio, P. [Ciudad Universitaria, Ciudad Autonoma de Buenos Aires, Centro de Investigaciones del Mar y la Atmosfera (CIMA), CONICET-UBA, Buenos Aires (Argentina); Universidad de Buenos Aires, Departamento de Ciencias de la Atmosfera y los Oceanos (DCAO), FCEN, Buenos Aires (Argentina); UMI IFAECI/CNRS, Buenos Aires (Argentina); Remedio, A.R.C.; Jacob, D.; Pfeifer, S. [Max Planck Institute for Meteorology (MPI-M), Hamburg (Germany); Robledo, F.; Tencer, B. [Universidad de Buenos Aires, Departamento de Ciencias de la Atmosfera y los Oceanos (DCAO), FCEN, Buenos Aires (Argentina); Soerensson, A.; Zaninelli, P. [Ciudad Universitaria, Ciudad Autonoma de Buenos Aires, Centro de Investigaciones del Mar y la Atmosfera (CIMA), CONICET-UBA, Buenos Aires (Argentina); UMI IFAECI/CNRS, Buenos Aires (Argentina); Boulanger, J.P. [LOCEAN, UMR CNRS/IRD/UPMC, Paris (France); Castro, M. de; Sanchez, E. [Universidad de Castilla-La Mancha (UCLM), Toledo (Spain); Le Treut, H.; Li, L.Z.X. [Sciences de l' Environnement en Ile de France, Laboratoire de Meteorologie Dynamique (LMD), Institut-Pierre-Simon-Laplace et Ecole Doctorale, Paris (France); Penalba, O.; Rusticucci, M. [Universidad de Buenos Aires, Departamento de Ciencias de la Atmosfera y los Oceanos (DCAO), FCEN, Buenos Aires (Argentina); UMI IFAECI/CNRS, Buenos Aires (Argentina); Samuelsson, P. [Swedish Meteorological and Hydrological Institute (SMHI), Norrkoeping (Sweden)

    2012-12-15

    The ability of four regional climate models to reproduce the present-day South American climate is examined with emphasis on La Plata Basin. Models were integrated for the period 1991-2000 with initial and lateral boundary conditions from ERA-40 Reanalysis. The ensemble sea level pressure, maximum and minimum temperatures and precipitation are evaluated in terms of seasonal means and extreme indices based on a percentile approach. Dispersion among the individual models and uncertainties when comparing the ensemble mean with different climatologies are also discussed. The ensemble mean is warmer than the observations in South Eastern South America (SESA), especially for minimum winter temperatures with errors increasing in magnitude towards the tails of the distributions. The ensemble mean reproduces the broad spatial pattern of precipitation, but overestimates the convective precipitation in the tropics and the orographic precipitation along the Andes and over the Brazilian Highlands, and underestimates the precipitation near the monsoon core region. The models overestimate the number of wet days and underestimate the daily intensity of rainfall for both seasons suggesting a premature triggering of convection. The skill of models to simulate the intensity of convective precipitation in summer in SESA and the variability associated with heavy precipitation events (the upper quartile daily precipitation) is far from satisfactory. Owing to the sparseness of the observing network, ensemble and observations uncertainties in seasonal means are comparable for some regions and seasons. (orig.)

  5. Modeling Coordination Problems in a Music Ensemble

    DEFF Research Database (Denmark)

    Frimodt-Møller, Søren R.

    2008-01-01

    This paper considers in general terms, how musicians are able to coordinate through rational choices in a situation of (temporary) doubt in an ensemble performance. A fictitious example involving a 5-bar development in an unknown piece of music is analyzed in terms of epistemic logic, more...... to coordinate. Such coordination can be described in terms of Michael Bacharach's theory of variable frames as an aid to solve game theoretic coordination problems....

  6. Anti-Müllerian hormone remains highly expressed in human cumulus cells during the final stages of folliculogenesis

    DEFF Research Database (Denmark)

    Grøndahl, M L; Nielsen, M Eilsø; Dal Canto, M B

    2011-01-01

    This study evaluated whether anti-Müllerian hormone (AMH) was differentially expressed in cumulus (CC) and granulosa (GC) cells from large antral and pre-ovulatory follicles collected from individual follicles in women undergoing in-vitro maturation (IVM) or IVF treatment. Expression studies of A...

  7. Ecological Promises and Execution in hotel chains. Case: Restel Cumulus and Scandic

    OpenAIRE

    Järvenpää, Mona

    2012-01-01

    During the last decade the terms ‘eco’ and ‘green’ have created a trend in the tourism indus-try. This research focuses on two hotel chains that operate in Finland. One of the target chains is Finnish Restel Cumulus hotels and the other chain is originally Swedish, Scandic. This research studies the basic facts and the eco promises of these two hotel chains and the terms that this topic includes, for example sustainability, eco-label, ecological and eco-tourism. This research aims to find th...

  8. Seeking for the rational basis of the Median Model: the optimal combination of multi-model ensemble results

    Directory of Open Access Journals (Sweden)

    A. Riccio

    2007-12-01

    Full Text Available In this paper we present an approach for the statistical analysis of multi-model ensemble results. The models considered here are operational long-range transport and dispersion models, also used for the real-time simulation of pollutant dispersion or the accidental release of radioactive nuclides.

    We first introduce the theoretical basis (with its roots sinking into the Bayes theorem and then apply this approach to the analysis of model results obtained during the ETEX-1 exercise. We recover some interesting results, supporting the heuristic approach called "median model", originally introduced in Galmarini et al. (2004a, b.

    This approach also provides a way to systematically reduce (and quantify model uncertainties, thus supporting the decision-making process and/or regulatory-purpose activities in a very effective manner.

  9. Ensemble urban flood simulation in comparison with laboratory-scale experiments: Impact of interaction models for manhole, sewer pipe, and surface flow

    Science.gov (United States)

    Noh, Seong Jin; Lee, Seungsoo; An, Hyunuk; Kawaike, Kenji; Nakagawa, Hajime

    2016-11-01

    An urban flood is an integrated phenomenon that is affected by various uncertainty sources such as input forcing, model parameters, complex geometry, and exchanges of flow among different domains in surfaces and subsurfaces. Despite considerable advances in urban flood modeling techniques, limited knowledge is currently available with regard to the impact of dynamic interaction among different flow domains on urban floods. In this paper, an ensemble method for urban flood modeling is presented to consider the parameter uncertainty of interaction models among a manhole, a sewer pipe, and surface flow. Laboratory-scale experiments on urban flood and inundation are performed under various flow conditions to investigate the parameter uncertainty of interaction models. The results show that ensemble simulation using interaction models based on weir and orifice formulas reproduces experimental data with high accuracy and detects the identifiability of model parameters. Among interaction-related parameters, the parameters of the sewer-manhole interaction show lower uncertainty than those of the sewer-surface interaction. Experimental data obtained under unsteady-state conditions are more informative than those obtained under steady-state conditions to assess the parameter uncertainty of interaction models. Although the optimal parameters vary according to the flow conditions, the difference is marginal. Simulation results also confirm the capability of the interaction models and the potential of the ensemble-based approaches to facilitate urban flood simulation.

  10. Variable-Resolution Ensemble Climatology Modeling of Sierra Nevada Snowpack within the Community Earth System Model (CESM)

    Science.gov (United States)

    Rhoades, A.; Ullrich, P. A.; Zarzycki, C. M.; Levy, M.; Taylor, M.

    2014-12-01

    Snowpack is crucial for the western USA, providing around 75% of the total fresh water supply (Cayan et al., 1996) and buffering against seasonal aridity impacts on agricultural, ecosystem, and urban water demands. The resilience of the California water system is largely dependent on natural stores provided by snowpack. This resilience has shown vulnerabilities due to anthropogenic global climate change. Historically, the northern Sierras showed a net decline of 50-75% in snow water equivalent (SWE) while the southern Sierras showed a net accumulation of 30% (Mote et al., 2005). Future trends of SWE highlight that western USA SWE may decline by 40-70% (Pierce and Cayan, 2013), snowfall may decrease by 25-40% (Pierce and Cayan, 2013), and more winter storms may tend towards rain rather than snow (Bales et al., 2006). The volatility of Sierran snowpack presents a need for scientific tools to help water managers and policy makers assess current and future trends. A burgeoning tool to analyze these trends comes in the form of variable-resolution global climate modeling (VRGCM). VRGCMs serve as a bridge between regional and global models and provide added resolution in areas of need, eliminate lateral boundary forcings, provide model runtime speed up, and utilize a common dynamical core, physics scheme and sub-grid scale parameterization package. A cubed-sphere variable-resolution grid with 25 km horizontal resolution over the western USA was developed for use in the Community Atmosphere Model (CAM) within the Community Earth System Model (CESM). A 25-year three-member ensemble climatology (1980-2005) is presented and major snowpack metrics such as SWE, snow depth, snow cover, and two-meter surface temperature are assessed. The ensemble simulation is also compared to observational, reanalysis, and WRF model datasets. The variable-resolution model provides a mechanism for reaching towards non-hydrostatic scales and simulations are currently being developed with refined

  11. NCAR's Experimental Real-time Convection-allowing Ensemble Prediction System

    Science.gov (United States)

    Schwartz, C. S.; Romine, G. S.; Sobash, R.; Fossell, K.

    2016-12-01

    Since April 2015, the National Center for Atmospheric Research's (NCAR's) Mesoscale and Microscale Meteorology (MMM) Laboratory, in collaboration with NCAR's Computational Information Systems Laboratory (CISL), has been producing daily, real-time, 10-member, 48-hr ensemble forecasts with 3-km horizontal grid spacing over the conterminous United States (http://ensemble.ucar.edu). These computationally-intensive, next-generation forecasts are produced on the Yellowstone supercomputer, have been embraced by both amateur and professional weather forecasters, are widely used by NCAR and university researchers, and receive considerable attention on social media. Initial conditions are supplied by NCAR's Data Assimilation Research Testbed (DART) software and the forecast model is NCAR's Weather Research and Forecasting (WRF) model; both WRF and DART are community tools. This presentation will focus on cutting-edge research results leveraging the ensemble dataset, including winter weather predictability, severe weather forecasting, and power outage modeling. Additionally, the unique design of the real-time analysis and forecast system and computational challenges and solutions will be described.

  12. Deviations from Wick's theorem in the canonical ensemble

    Science.gov (United States)

    Schönhammer, K.

    2017-07-01

    Wick's theorem for the expectation values of products of field operators for a system of noninteracting fermions or bosons plays an important role in the perturbative approach to the quantum many-body problem. A finite-temperature version holds in the framework of the grand canonical ensemble, but not for the canonical ensemble appropriate for systems with fixed particle number such as ultracold quantum gases in optical lattices. Here we present formulas for expectation values of products of field operators in the canonical ensemble using a method in the spirit of Gaudin's proof of Wick's theorem for the grand canonical case. The deviations from Wick's theorem are examined quantitatively for two simple models of noninteracting fermions.

  13. A variational ensemble scheme for noisy image data assimilation

    Science.gov (United States)

    Yang, Yin; Robinson, Cordelia; Heitz, Dominique; Mémin, Etienne

    2014-05-01

    Data assimilation techniques aim at recovering a system state variables trajectory denoted as X, along time from partially observed noisy measurements of the system denoted as Y. These procedures, which couple dynamics and noisy measurements of the system, fulfill indeed a twofold objective. On one hand, they provide a denoising - or reconstruction - procedure of the data through a given model framework and on the other hand, they provide estimation procedures for unknown parameters of the dynamics. A standard variational data assimilation problem can be formulated as the minimization of the following objective function with respect to the initial discrepancy, η, from the background initial guess: δ« J(η(x)) = 1∥Xb (x) - X (t ,x)∥2 + 1 tf∥H(X (t,x ))- Y (t,x)∥2dt. 2 0 0 B 2 t0 R (1) where the observation operator H links the state variable and the measurements. The cost function can be interpreted as the log likelihood function associated to the a posteriori distribution of the state given the past history of measurements and the background. In this work, we aim at studying ensemble based optimal control strategies for data assimilation. Such formulation nicely combines the ingredients of ensemble Kalman filters and variational data assimilation (4DVar). It is also formulated as the minimization of the objective function (1), but similarly to ensemble filter, it introduces in its objective function an empirical ensemble-based background-error covariance defined as: B ≡ )(Xb - )T>. (2) Thus, it works in an off-line smoothing mode rather than on the fly like sequential filters. Such resulting ensemble variational data assimilation technique corresponds to a relatively new family of methods [1,2,3]. It presents two main advantages: first, it does not require anymore to construct the adjoint of the dynamics tangent linear operator, which is a considerable advantage with respect to the method's implementation, and second, it enables the handling of a flow

  14. ABCD of Beta Ensembles and Topological Strings

    CERN Document Server

    Krefl, Daniel

    2012-01-01

    We study beta-ensembles with Bn, Cn, and Dn eigenvalue measure and their relation with refined topological strings. Our results generalize the familiar connections between local topological strings and matrix models leading to An measure, and illustrate that all those classical eigenvalue ensembles, and their topological string counterparts, are related one to another via various deformations and specializations, quantum shifts and discrete quotients. We review the solution of the Gaussian models via Macdonald identities, and interpret them as conifold theories. The interpolation between the various models is plainly apparent in this case. For general polynomial potential, we calculate the partition function in the multi-cut phase in a perturbative fashion, beyond tree-level in the large-N limit. The relation to refined topological string orientifolds on the corresponding local geometry is discussed along the way.

  15. Evaporation-condensation transition of the two-dimensional Potts model in the microcanonical ensemble

    KAUST Repository

    Nogawa, Tomoaki

    2011-12-05

    The evaporation-condensation transition of the Potts model on a square lattice is numerically investigated by the Wang-Landau sampling method. An intrinsically system-size-dependent discrete transition between supersaturation state and phase-separation state is observed in the microcanonical ensemble by changing constrained internal energy. We calculate the microcanonical temperature, as a derivative of microcanonical entropy, and condensation ratio, and perform a finite-size scaling of them to indicate the clear tendency of numerical data to converge to the infinite-size limit predicted by phenomenological theory for the isotherm lattice gas model. © 2011 American Physical Society.

  16. Cyclone Activity in the Arctic From an Ensemble of Regional Climate Models (Arctic CORDEX)

    Science.gov (United States)

    Akperov, Mirseid; Rinke, Annette; Mokhov, Igor I.; Matthes, Heidrun; Semenov, Vladimir A.; Adakudlu, Muralidhar; Cassano, John; Christensen, Jens H.; Dembitskaya, Mariya A.; Dethloff, Klaus; Fettweis, Xavier; Glisan, Justin; Gutjahr, Oliver; Heinemann, Günther; Koenigk, Torben; Koldunov, Nikolay V.; Laprise, René; Mottram, Ruth; Nikiéma, Oumarou; Scinocca, John F.; Sein, Dmitry; Sobolowski, Stefan; Winger, Katja; Zhang, Wenxin

    2018-03-01

    The ability of state-of-the-art regional climate models to simulate cyclone activity in the Arctic is assessed based on an ensemble of 13 simulations from 11 models from the Arctic-CORDEX initiative. Some models employ large-scale spectral nudging techniques. Cyclone characteristics simulated by the ensemble are compared with the results forced by four reanalyses (ERA-Interim, National Centers for Environmental Prediction-Climate Forecast System Reanalysis, National Aeronautics and Space Administration-Modern-Era Retrospective analysis for Research and Applications Version 2, and Japan Meteorological Agency-Japanese 55-year reanalysis) in winter and summer for 1981-2010 period. In addition, we compare cyclone statistics between ERA-Interim and the Arctic System Reanalysis reanalyses for 2000-2010. Biases in cyclone frequency, intensity, and size over the Arctic are also quantified. Variations in cyclone frequency across the models are partly attributed to the differences in cyclone frequency over land. The variations across the models are largest for small and shallow cyclones for both seasons. A connection between biases in the zonal wind at 200 hPa and cyclone characteristics is found for both seasons. Most models underestimate zonal wind speed in both seasons, which likely leads to underestimation of cyclone mean depth and deep cyclone frequency in the Arctic. In general, the regional climate models are able to represent the spatial distribution of cyclone characteristics in the Arctic but models that employ large-scale spectral nudging show a better agreement with ERA-Interim reanalysis than the rest of the models. Trends also exhibit the benefits of nudging. Models with spectral nudging are able to reproduce the cyclone trends, whereas most of the nonnudged models fail to do so. However, the cyclone characteristics and trends are sensitive to the choice of nudged variables.

  17. Ensemble prediction of floods – catchment non-linearity and forecast probabilities

    Directory of Open Access Journals (Sweden)

    C. Reszler

    2007-07-01

    Full Text Available Quantifying the uncertainty of flood forecasts by ensemble methods is becoming increasingly important for operational purposes. The aim of this paper is to examine how the ensemble distribution of precipitation forecasts propagates in the catchment system, and to interpret the flood forecast probabilities relative to the forecast errors. We use the 622 km2 Kamp catchment in Austria as an example where a comprehensive data set, including a 500 yr and a 1000 yr flood, is available. A spatially-distributed continuous rainfall-runoff model is used along with ensemble and deterministic precipitation forecasts that combine rain gauge data, radar data and the forecast fields of the ALADIN and ECMWF numerical weather prediction models. The analyses indicate that, for long lead times, the variability of the precipitation ensemble is amplified as it propagates through the catchment system as a result of non-linear catchment response. In contrast, for lead times shorter than the catchment lag time (e.g. 12 h and less, the variability of the precipitation ensemble is decreased as the forecasts are mainly controlled by observed upstream runoff and observed precipitation. Assuming that all ensemble members are equally likely, the statistical analyses for five flood events at the Kamp showed that the ensemble spread of the flood forecasts is always narrower than the distribution of the forecast errors. This is because the ensemble forecasts focus on the uncertainty in forecast precipitation as the dominant source of uncertainty, and other sources of uncertainty are not accounted for. However, a number of analyses, including Relative Operating Characteristic diagrams, indicate that the ensemble spread is a useful indicator to assess potential forecast errors for lead times larger than 12 h.

  18. Multi-model ensemble projections of European river floods and high flows at 1.5, 2, and 3 degree global warming

    Science.gov (United States)

    Thober, S.; Kumar, R.; Wanders, N.; Marx, A.; Pan, M.; Rakovec, O.; Samaniego, L. E.; Sheffield, J.; Wood, E. F.; Zink, M.

    2017-12-01

    Severe river floods often result in huge economic losses and fatalities. Since 1980, almost 1500 such events have been reported in Europe. This study investigates climate change impacts on European floods under 1.5, 2, and 3 K global warming. The impacts are assessed employing a multi-model ensemble containing three hydrologic models (HMs: mHM, Noah-MP, PCR-GLOBWB) forced by five CMIP5 General Circulation Models (GCMs) under three Representative Concentration Pathways (RCPs 2.6, 6.0, and 8.5). This multi-model ensemble is unprecedented with respect to the combination of its size (45 realisations) and its spatial resolution, which is 5 km over entire Europe. Climate change impacts are quantified for high flows and flood events, represented by 10% exceedance probability and annual maxima of daily streamflow, respectively. The multi-model ensemble points to the Mediterranean region as a hotspot of changes with significant decrements in high flows from -11% at 1.5 K up to -30% at 3 K global warming mainly resulting from reduced precipitation. Small changes (< ±10%) are observed for river basins in Central Europe and the British Isles under different levels of warming. Projected higher annual precipitation increases high flows in Scandinavia, but reduced snow water equivalent decreases flood events in this region. The contribution by the GCMs to the overall uncertainties of the ensemble is in general higher than that by the HMs. The latter, however, have a substantial share of the overall uncertainty and exceed GCM uncertainty in the Mediterranean and Scandinavia. Adaptation measures for limiting the impacts of global warming could be similar under 1.5 K and 2 K global warming, but has to account for significantly higher changes under 3 K global warming.

  19. Localization of atomic ensembles via superfluorescence

    International Nuclear Information System (INIS)

    Macovei, Mihai; Evers, Joerg; Keitel, Christoph H.; Zubairy, M. Suhail

    2007-01-01

    The subwavelength localization of an ensemble of atoms concentrated to a small volume in space is investigated. The localization relies on the interaction of the ensemble with a standing wave laser field. The light scattered in the interaction of the standing wave field and the atom ensemble depends on the position of the ensemble relative to the standing wave nodes. This relation can be described by a fluorescence intensity profile, which depends on the standing wave field parameters and the ensemble properties and which is modified due to collective effects in the ensemble of nearby particles. We demonstrate that the intensity profile can be tailored to suit different localization setups. Finally, we apply these results to two localization schemes. First, we show how to localize an ensemble fixed at a certain position in the standing wave field. Second, we discuss localization of an ensemble passing through the standing wave field

  20. Ensembl 2017

    OpenAIRE

    Aken, Bronwen L.; Achuthan, Premanand; Akanni, Wasiu; Amode, M. Ridwan; Bernsdorff, Friederike; Bhai, Jyothish; Billis, Konstantinos; Carvalho-Silva, Denise; Cummins, Carla; Clapham, Peter; Gil, Laurent; Gir?n, Carlos Garc?a; Gordon, Leo; Hourlier, Thibaut; Hunt, Sarah E.

    2016-01-01

    Ensembl (www.ensembl.org) is a database and genome browser for enabling research on vertebrate genomes. We import, analyse, curate and integrate a diverse collection of large-scale reference data to create a more comprehensive view of genome biology than would be possible from any individual dataset. Our extensive data resources include evidence-based gene and regulatory region annotation, genome variation and gene trees. An accompanying suite of tools, infrastructure and programmatic access ...

  1. Coupled atmosphere and land-surface assimilation of surface observations with a single column model and ensemble data assimilation

    Science.gov (United States)

    Rostkier-Edelstein, Dorita; Hacker, Joshua P.; Snyder, Chris

    2014-05-01

    Numerical weather prediction and data assimilation models are composed of coupled atmosphere and land-surface (LS) components. If possible, the assimilation procedure should be coupled so that observed information in one module is used to correct fields in the coupled module. There have been some attempts in this direction using optimal interpolation, nudging and 2/3DVAR data assimilation techniques. Aside from satellite remote sensed observations, reference height in-situ observations of temperature and moisture have been used in these studies. Among other problems, difficulties in coupled atmosphere and LS assimilation arise as a result of the different time scales characteristic of each component and the unsteady correlation between these components under varying flow conditions. Ensemble data-assimilation techniques rely on flow dependent observations-model covariances. Provided that correlations and covariances between land and atmosphere can be adequately simulated and sampled, ensemble data assimilation should enable appropriate assimilation of observations simultaneously into the atmospheric and LS states. Our aim is to explore assimilation of reference height in-situ temperature and moisture observations into the coupled atmosphere-LS modules(simultaneously) in NCAR's WRF-ARW model using the NCAR's DART ensemble data-assimilation system. Observing system simulation experiments (OSSEs) are performed using the single column model (SCM) version of WRF. Numerical experiments during a warm season are centered on an atmospheric and soil column in the South Great Plains. Synthetic observations are derived from "truth" WRF-SCM runs for a given date,initialized and forced using North American Regional Reanalyses (NARR). WRF-SCM atmospheric and LS ensembles are created by mixing the atmospheric and soil NARR profile centered on a given date with that from another day (randomly chosen from the same season) with weights drawn from a logit-normal distribution. Three

  2. Evaluating The Effect of Melatonin on HAS2, and PGR expression, as well as Cumulus Expansion, and Fertility Potential in Mice.

    Science.gov (United States)

    Ezzati, Maryam; Roshangar, Leila; Soleimani Rad, Jafar; Karimian, Nahid

    2018-04-01

    Infertility is a worldwide health problem which affects approximately 15% of sexually active couples. One of the factors influencing the fertility is melatonin. Also, protection of oocytes and embryos from oxidative stress inducing chemicals in the culture medium is important. The aim of the present study was to investigate if melatonin could regulate hyaluronan synthase-2 (HAS2) and Progesterone receptor (PGR) expressions in the cumulus cells of mice oocytes and provide an in vitro fertilization (IVF) approach. In this experimental study, for this purpose, 30 adult female mice and 15 adult male mice were used. The female mice were superovulated using 10 U of pregnant mare serum gonadotropin (PMSG) and 24 hours later, 10 U of human chorionic gonadotropin (hCG) were injected. Next, cumulus oocyte complexes (COCs) were collected from the oviducts of the female mice by using a matrix-flushing method. The cumulus cells were cultured with melatonin 10 μM for 6 hours and for real-time reverse transcription-polymerase chain reaction (RT-PCR) was used for evaluation of HAS2 and PGR expression levels. The fertilization rate was evaluated through IVF. All the data were analyzed using a t test. The results of this study showed that HAS2 and PGR expressions in the cumulus cells of the mice receiving melatonin increased in comparison to the control groups. Also, IVF results revealed an enhancement in fertilization rate in the experimental groups compared to the control groups. To improve the oocyte quality and provide new approaches for infertility treatment, administration of melatonin as an antioxidant, showed promising results. Thus, it is concluded that fertility outcomes can be improved by melatonin it enhances PGR. Copyright© by Royan Institute. All rights reserved.

  3. Limited-area short-range ensemble predictions targeted for heavy rain in Europe

    Directory of Open Access Journals (Sweden)

    K. Sattler

    2005-01-01

    Full Text Available Inherent uncertainties in short-range quantitative precipitation forecasts (QPF from the high-resolution, limited-area numerical weather prediction model DMI-HIRLAM (LAM are addressed using two different approaches to creating a small ensemble of LAM simulations, with focus on prediction of extreme rainfall events over European river basins. The first ensemble type is designed to represent uncertainty in the atmospheric state of the initial condition and at the lateral LAM boundaries. The global ensemble prediction system (EPS from ECMWF serves as host model to the LAM and provides the state perturbations, from which a small set of significant members is selected. The significance is estimated on the basis of accumulated precipitation over a target area of interest, which contains the river basin(s under consideration. The selected members provide the initial and boundary data for the ensemble integration in the LAM. A second ensemble approach tries to address a portion of the model-inherent uncertainty responsible for errors in the forecasted precipitation field by utilising different parameterisation schemes for condensation and convection in the LAM. Three periods around historical heavy rain events that caused or contributed to disastrous river flooding in Europe are used to study the performance of the LAM ensemble designs. The three cases exhibit different dynamic and synoptic characteristics and provide an indication of the ensemble qualities in different weather situations. Precipitation analyses from the Deutsche Wetterdienst (DWD are used as the verifying reference and a comparison of daily rainfall amounts is referred to the respective river basins of the historical cases.

  4. Research resources: comparative microRNA profiles in human corona radiata cells and cumulus oophorus cells detected by next-generation small RNA sequencing.

    Directory of Open Access Journals (Sweden)

    Xian-Hong Tong

    Full Text Available During folliculogenesis, cumulus cells surrounding the oocyte differentiate into corona radiata cells (CRCs and cumulus oophorus cells (COCs, which are involved in gonadal steroidogenesis and the development of germ cells. Several studies suggested that microRNAs (miRNAs play an important regulatory role at the post-transcriptional level in cumulus cells. However, comparative miRNA profiles and associated processes in human CRCs and COCs have not been reported before. In this study, miRNA profiles were obtained from CRCs and COCs using next generation sequencing in women undergoing controlled ovarian stimulation for IVF. A total of 785 and 799 annotated miRNAs were identified in CRCs and COCs, while high expression levels of six novel miRNAs were detected both in CRCs and in COCs. In addition, different expression patterns in CRCs and COCs were detected in 72 annotated miRNAs. To confirm the miRNA profile in COCs and CRCs, quantitative real-time PCR was used to validate the expression of annotated miRNAs, differentially expressed miRNAs, and novel miRNAs. The miRNAs in the let-7 family were found to be involved in the regulation of a broad range of biological processes in both cumulus cell populations, which was accompanied by a large amount of miRNA editing. Bioinformatics analysis showed that amino acid and energy metabolism were targeted significantly by miRNAs that were differentially expressed between CRCs and COCs. Our work extends the current knowledge of the regulatory role of miRNAs and their targeted pathways in folliculogenesis, and provides novel candidates for molecular biomarkers in the research of female infertility.

  5. Hyperparameterization of soil moisture statistical models for North America with Ensemble Learning Models (Elm)

    Science.gov (United States)

    Steinberg, P. D.; Brener, G.; Duffy, D.; Nearing, G. S.; Pelissier, C.

    2017-12-01

    Hyperparameterization, of statistical models, i.e. automated model scoring and selection, such as evolutionary algorithms, grid searches, and randomized searches, can improve forecast model skill by reducing errors associated with model parameterization, model structure, and statistical properties of training data. Ensemble Learning Models (Elm), and the related Earthio package, provide a flexible interface for automating the selection of parameters and model structure for machine learning models common in climate science and land cover classification, offering convenient tools for loading NetCDF, HDF, Grib, or GeoTiff files, decomposition methods like PCA and manifold learning, and parallel training and prediction with unsupervised and supervised classification, clustering, and regression estimators. Continuum Analytics is using Elm to experiment with statistical soil moisture forecasting based on meteorological forcing data from NASA's North American Land Data Assimilation System (NLDAS). There Elm is using the NSGA-2 multiobjective optimization algorithm for optimizing statistical preprocessing of forcing data to improve goodness-of-fit for statistical models (i.e. feature engineering). This presentation will discuss Elm and its components, including dask (distributed task scheduling), xarray (data structures for n-dimensional arrays), and scikit-learn (statistical preprocessing, clustering, classification, regression), and it will show how NSGA-2 is being used for automate selection of soil moisture forecast statistical models for North America.

  6. Data Pre-Analysis and Ensemble of Various Artificial Neural Networks for Monthly Streamflow Forecasting

    Directory of Open Access Journals (Sweden)

    Jianzhong Zhou

    2018-05-01

    Full Text Available This paper introduces three artificial neural network (ANN architectures for monthly streamflow forecasting: a radial basis function network, an extreme learning machine, and the Elman network. Three ensemble techniques, a simple average ensemble, a weighted average ensemble, and an ANN-based ensemble, were used to combine the outputs of the individual ANN models. The objective was to highlight the performance of the general regression neural network-based ensemble technique (GNE through an improvement of monthly streamflow forecasting accuracy. Before the construction of an ANN model, data preanalysis techniques, such as empirical wavelet transform (EWT, were exploited to eliminate the oscillations of the streamflow series. Additionally, a theory of chaos phase space reconstruction was used to select the most relevant and important input variables for forecasting. The proposed GNE ensemble model has been applied for the mean monthly streamflow observation data from the Wudongde hydrological station in the Jinsha River Basin, China. Comparisons and analysis of this study have demonstrated that the denoised streamflow time series was less disordered and unsystematic than was suggested by the original time series according to chaos theory. Thus, EWT can be adopted as an effective data preanalysis technique for the prediction of monthly streamflow. Concurrently, the GNE performed better when compared with other ensemble techniques.

  7. An adaptive Gaussian process-based iterative ensemble smoother for data assimilation

    Science.gov (United States)

    Ju, Lei; Zhang, Jiangjiang; Meng, Long; Wu, Laosheng; Zeng, Lingzao

    2018-05-01

    Accurate characterization of subsurface hydraulic conductivity is vital for modeling of subsurface flow and transport. The iterative ensemble smoother (IES) has been proposed to estimate the heterogeneous parameter field. As a Monte Carlo-based method, IES requires a relatively large ensemble size to guarantee its performance. To improve the computational efficiency, we propose an adaptive Gaussian process (GP)-based iterative ensemble smoother (GPIES) in this study. At each iteration, the GP surrogate is adaptively refined by adding a few new base points chosen from the updated parameter realizations. Then the sensitivity information between model parameters and measurements is calculated from a large number of realizations generated by the GP surrogate with virtually no computational cost. Since the original model evaluations are only required for base points, whose number is much smaller than the ensemble size, the computational cost is significantly reduced. The applicability of GPIES in estimating heterogeneous conductivity is evaluated by the saturated and unsaturated flow problems, respectively. Without sacrificing estimation accuracy, GPIES achieves about an order of magnitude of speed-up compared with the standard IES. Although subsurface flow problems are considered in this study, the proposed method can be equally applied to other hydrological models.

  8. EnsembleGASVR: A novel ensemble method for classifying missense single nucleotide polymorphisms

    KAUST Repository

    Rapakoulia, Trisevgeni; Theofilatos, Konstantinos A.; Kleftogiannis, Dimitrios A.; Likothanasis, Spiridon D.; Tsakalidis, Athanasios K.; Mavroudi, Seferina P.

    2014-01-01

    do not support their predictions with confidence scores. Results: To overcome these limitations, a novel ensemble computational methodology is proposed. EnsembleGASVR facilitates a twostep algorithm, which in its first step applies a novel

  9. Village Building Identification Based on Ensemble Convolutional Neural Networks

    Science.gov (United States)

    Guo, Zhiling; Chen, Qi; Xu, Yongwei; Shibasaki, Ryosuke; Shao, Xiaowei

    2017-01-01

    In this study, we present the Ensemble Convolutional Neural Network (ECNN), an elaborate CNN frame formulated based on ensembling state-of-the-art CNN models, to identify village buildings from open high-resolution remote sensing (HRRS) images. First, to optimize and mine the capability of CNN for village mapping and to ensure compatibility with our classification targets, a few state-of-the-art models were carefully optimized and enhanced based on a series of rigorous analyses and evaluations. Second, rather than directly implementing building identification by using these models, we exploited most of their advantages by ensembling their feature extractor parts into a stronger model called ECNN based on the multiscale feature learning method. Finally, the generated ECNN was applied to a pixel-level classification frame to implement object identification. The proposed method can serve as a viable tool for village building identification with high accuracy and efficiency. The experimental results obtained from the test area in Savannakhet province, Laos, prove that the proposed ECNN model significantly outperforms existing methods, improving overall accuracy from 96.64% to 99.26%, and kappa from 0.57 to 0.86. PMID:29084154

  10. Short-term ensemble radar rainfall forecasts for hydrological applications

    Science.gov (United States)

    Codo de Oliveira, M.; Rico-Ramirez, M. A.

    2016-12-01

    Flooding is a very common natural disaster around the world, putting local population and economy at risk. Forecasting floods several hours ahead and issuing warnings are of main importance to permit proper response in emergency situations. However, it is important to know the uncertainties related to the rainfall forecasting in order to produce more reliable forecasts. Nowcasting models (short-term rainfall forecasts) are able to produce high spatial and temporal resolution predictions that are useful in hydrological applications. Nonetheless, they are subject to uncertainties mainly due to the nowcasting model used, errors in radar rainfall estimation, temporal development of the velocity field and to the fact that precipitation processes such as growth and decay are not taken into account. In this study an ensemble generation scheme using rain gauge data as a reference to estimate radars errors is used to produce forecasts with up to 3h lead-time. The ensembles try to assess in a realistic way the residual uncertainties that remain even after correction algorithms are applied in the radar data. The ensembles produced are compered to a stochastic ensemble generator. Furthermore, the rainfall forecast output was used as an input in a hydrodynamic sewer network model and also in hydrological model for catchments of different sizes in north England. A comparative analysis was carried of how was carried out to assess how the radar uncertainties propagate into these models. The first named author is grateful to CAPES - Ciencia sem Fronteiras for funding this PhD research.

  11. Identifying and Assessing Gaps in Subseasonal to Seasonal Prediction Skill using the North American Multi-model Ensemble

    Science.gov (United States)

    Pegion, K.; DelSole, T. M.; Becker, E.; Cicerone, T.

    2016-12-01

    Predictability represents the upper limit of prediction skill if we had an infinite member ensemble and a perfect model. It is an intrinsic limit of the climate system associated with the chaotic nature of the atmosphere. Producing a forecast system that can make predictions very near to this limit is the ultimate goal of forecast system development. Estimates of predictability together with calculations of current prediction skill are often used to define the gaps in our prediction capabilities on subseasonal to seasonal timescales and to inform the scientific issues that must be addressed to build the next forecast system. Quantification of the predictability is also important for providing a scientific basis for relaying to stakeholders what kind of climate information can be provided to inform decision-making and what kind of information is not possible given the intrinsic predictability of the climate system. One challenge with predictability estimates is that different prediction systems can give different estimates of the upper limit of skill. How do we know which estimate of predictability is most representative of the true predictability of the climate system? Previous studies have used the spread-error relationship and the autocorrelation to evaluate the fidelity of the signal and noise estimates. Using a multi-model ensemble prediction system, we can quantify whether these metrics accurately indicate an individual model's ability to properly estimate the signal, noise, and predictability. We use this information to identify the best estimates of predictability for 2-meter temperature, precipitation, and sea surface temperature from the North American Multi-model Ensemble and compare with current skill to indicate the regions with potential for improving skill.

  12. Machines vs. ensembles: effective MAPK signaling through heterogeneous sets of protein complexes.

    Directory of Open Access Journals (Sweden)

    Ryan Suderman

    Full Text Available Despite the importance of intracellular signaling networks, there is currently no consensus regarding the fundamental nature of the protein complexes such networks employ. One prominent view involves stable signaling machines with well-defined quaternary structures. The combinatorial complexity of signaling networks has led to an opposing perspective, namely that signaling proceeds via heterogeneous pleiomorphic ensembles of transient complexes. Since many hypotheses regarding network function rely on how we conceptualize signaling complexes, resolving this issue is a central problem in systems biology. Unfortunately, direct experimental characterization of these complexes has proven technologically difficult, while combinatorial complexity has prevented traditional modeling methods from approaching this question. Here we employ rule-based modeling, a technique that overcomes these limitations, to construct a model of the yeast pheromone signaling network. We found that this model exhibits significant ensemble character while generating reliable responses that match experimental observations. To contrast the ensemble behavior, we constructed a model that employs hierarchical assembly pathways to produce scaffold-based signaling machines. We found that this machine model could not replicate the experimentally observed combinatorial inhibition that arises when the scaffold is overexpressed. This finding provides evidence against the hierarchical assembly of machines in the pheromone signaling network and suggests that machines and ensembles may serve distinct purposes in vivo. In some cases, e.g. core enzymatic activities like protein synthesis and degradation, machines assembled via hierarchical energy landscapes may provide functional stability for the cell. In other cases, such as signaling, ensembles may represent a form of weak linkage, facilitating variation and plasticity in network evolution. The capacity of ensembles to signal effectively

  13. Insights into the deterministic skill of air quality ensembles from the analysis of AQMEII data

    Directory of Open Access Journals (Sweden)

    I. Kioutsioukis

    2016-12-01

    Full Text Available Simulations from chemical weather models are subject to uncertainties in the input data (e.g. emission inventory, initial and boundary conditions as well as those intrinsic to the model (e.g. physical parameterization, chemical mechanism. Multi-model ensembles can improve the forecast skill, provided that certain mathematical conditions are fulfilled. In this work, four ensemble methods were applied to two different datasets, and their performance was compared for ozone (O3, nitrogen dioxide (NO2 and particulate matter (PM10. Apart from the unconditional ensemble average, the approach behind the other three methods relies on adding optimum weights to members or constraining the ensemble to those members that meet certain conditions in time or frequency domain. The two different datasets were created for the first and second phase of the Air Quality Model Evaluation International Initiative (AQMEII. The methods are evaluated against ground level observations collected from the EMEP (European Monitoring and Evaluation Programme and AirBase databases. The goal of the study is to quantify to what extent we can extract predictable signals from an ensemble with superior skill over the single models and the ensemble mean. Verification statistics show that the deterministic models simulate better O3 than NO2 and PM10, linked to different levels of complexity in the represented processes. The unconditional ensemble mean achieves higher skill compared to each station's best deterministic model at no more than 60 % of the sites, indicating a combination of members with unbalanced skill difference and error dependence for the rest. The promotion of the right amount of accuracy and diversity within the ensemble results in an average additional skill of up to 31 % compared to using the full ensemble in an unconditional way. The skill improvements were higher for O3 and lower for PM10, associated with the extent of potential changes in the joint

  14. A statistical analysis of three ensembles of crop model responses totemperature and CO2concentration

    DEFF Research Database (Denmark)

    Makowski, D; Asseng, S; Ewert, F.

    2015-01-01

    Ensembles of process-based crop models are increasingly used to simulate crop growth for scenarios of temperature and/or precipitation changes corresponding to different projections of atmospheric CO2 concentrations. This approach generates large datasets with thousands of simulated crop yield data...

  15. Ensemble hydro-meteorological forecasting for early warning of floods and scheduling of hydropower production

    Science.gov (United States)

    Solvang Johansen, Stian; Steinsland, Ingelin; Engeland, Kolbjørn

    2016-04-01

    Running hydrological models with precipitation and temperature ensemble forcing to generate ensembles of streamflow is a commonly used method in operational hydrology. Evaluations of streamflow ensembles have however revealed that the ensembles are biased with respect to both mean and spread. Thus postprocessing of the ensembles is needed in order to improve the forecast skill. The aims of this study is (i) to to evaluate how postprocessing of streamflow ensembles works for Norwegian catchments within different hydrological regimes and to (ii) demonstrate how post processed streamflow ensembles are used operationally by a hydropower producer. These aims were achieved by postprocessing forecasted daily discharge for 10 lead-times for 20 catchments in Norway by using EPS forcing from ECMWF applied the semi-distributed HBV-model dividing each catchment into 10 elevation zones. Statkraft Energi uses forecasts from these catchments for scheduling hydropower production. The catchments represent different hydrological regimes. Some catchments have stable winter condition with winter low flow and a major flood event during spring or early summer caused by snow melting. Others has a more mixed snow-rain regime, often with a secondary flood season during autumn, and in the coastal areas, the stream flow is dominated by rain, and the main flood season is autumn and winter. For post processing, a Bayesian model averaging model (BMA) close to (Kleiber et al 2011) is used. The model creates a predictive PDF that is a weighted average of PDFs centered on the individual bias corrected forecasts. The weights are here equal since all ensemble members come from the same model, and thus have the same probability. For modeling streamflow, the gamma distribution is chosen as a predictive PDF. The bias correction parameters and the PDF parameters are estimated using a 30-day sliding window training period. Preliminary results show that the improvement varies between catchments depending

  16. Ocean Predictability and Uncertainty Forecasts Using Local Ensemble Transfer Kalman Filter (LETKF)

    Science.gov (United States)

    Wei, M.; Hogan, P. J.; Rowley, C. D.; Smedstad, O. M.; Wallcraft, A. J.; Penny, S. G.

    2017-12-01

    Ocean predictability and uncertainty are studied with an ensemble system that has been developed based on the US Navy's operational HYCOM using the Local Ensemble Transfer Kalman Filter (LETKF) technology. One of the advantages of this method is that the best possible initial analysis states for the HYCOM forecasts are provided by the LETKF which assimilates operational observations using ensemble method. The background covariance during this assimilation process is implicitly supplied with the ensemble avoiding the difficult task of developing tangent linear and adjoint models out of HYCOM with the complicated hybrid isopycnal vertical coordinate for 4D-VAR. The flow-dependent background covariance from the ensemble will be an indispensable part in the next generation hybrid 4D-Var/ensemble data assimilation system. The predictability and uncertainty for the ocean forecasts are studied initially for the Gulf of Mexico. The results are compared with another ensemble system using Ensemble Transfer (ET) method which has been used in the Navy's operational center. The advantages and disadvantages are discussed.

  17. Statistical ensembles for money and debt

    Science.gov (United States)

    Viaggiu, Stefano; Lionetto, Andrea; Bargigli, Leonardo; Longo, Michele

    2012-10-01

    We build a statistical ensemble representation of two economic models describing respectively, in simplified terms, a payment system and a credit market. To this purpose we adopt the Boltzmann-Gibbs distribution where the role of the Hamiltonian is taken by the total money supply (i.e. including money created from debt) of a set of interacting economic agents. As a result, we can read the main thermodynamic quantities in terms of monetary ones. In particular, we define for the credit market model a work term which is related to the impact of monetary policy on credit creation. Furthermore, with our formalism we recover and extend some results concerning the temperature of an economic system, previously presented in the literature by considering only the monetary base as a conserved quantity. Finally, we study the statistical ensemble for the Pareto distribution.

  18. Stochastic Approaches Within a High Resolution Rapid Refresh Ensemble

    Science.gov (United States)

    Jankov, I.

    2017-12-01

    It is well known that global and regional numerical weather prediction (NWP) ensemble systems are under-dispersive, producing unreliable and overconfident ensemble forecasts. Typical approaches to alleviate this problem include the use of multiple dynamic cores, multiple physics suite configurations, or a combination of the two. While these approaches may produce desirable results, they have practical and theoretical deficiencies and are more difficult and costly to maintain. An active area of research that promotes a more unified and sustainable system is the use of stochastic physics. Stochastic approaches include Stochastic Parameter Perturbations (SPP), Stochastic Kinetic Energy Backscatter (SKEB), and Stochastic Perturbation of Physics Tendencies (SPPT). The focus of this study is to assess model performance within a convection-permitting ensemble at 3-km grid spacing across the Contiguous United States (CONUS) using a variety of stochastic approaches. A single physics suite configuration based on the operational High-Resolution Rapid Refresh (HRRR) model was utilized and ensemble members produced by employing stochastic methods. Parameter perturbations (using SPP) for select fields were employed in the Rapid Update Cycle (RUC) land surface model (LSM) and Mellor-Yamada-Nakanishi-Niino (MYNN) Planetary Boundary Layer (PBL) schemes. Within MYNN, SPP was applied to sub-grid cloud fraction, mixing length, roughness length, mass fluxes and Prandtl number. In the RUC LSM, SPP was applied to hydraulic conductivity and tested perturbing soil moisture at initial time. First iterative testing was conducted to assess the initial performance of several configuration settings (e.g. variety of spatial and temporal de-correlation lengths). Upon selection of the most promising candidate configurations using SPP, a 10-day time period was run and more robust statistics were gathered. SKEB and SPPT were included in additional retrospective tests to assess the impact of using

  19. The canonical ensemble redefined - 1: Formalism

    International Nuclear Information System (INIS)

    Venkataraman, R.

    1984-12-01

    For studying the thermodynamic properties of systems we propose an ensemble that lies in between the familiar canonical and microcanonical ensembles. We point out the transition from the canonical to microcanonical ensemble and prove from a comparative study that all these ensembles do not yield the same results even in the thermodynamic limit. An investigation of the coupling between two or more systems with these ensembles suggests that the state of thermodynamical equilibrium is a special case of statistical equilibrium. (author)

  20. SVM and SVM Ensembles in Breast Cancer Prediction.

    Science.gov (United States)

    Huang, Min-Wei; Chen, Chih-Wen; Lin, Wei-Chao; Ke, Shih-Wen; Tsai, Chih-Fong

    2017-01-01

    Breast cancer is an all too common disease in women, making how to effectively predict it an active research problem. A number of statistical and machine learning techniques have been employed to develop various breast cancer prediction models. Among them, support vector machines (SVM) have been shown to outperform many related techniques. To construct the SVM classifier, it is first necessary to decide the kernel function, and different kernel functions can result in different prediction performance. However, there have been very few studies focused on examining the prediction performances of SVM based on different kernel functions. Moreover, it is unknown whether SVM classifier ensembles which have been proposed to improve the performance of single classifiers can outperform single SVM classifiers in terms of breast cancer prediction. Therefore, the aim of this paper is to fully assess the prediction performance of SVM and SVM ensembles over small and large scale breast cancer datasets. The classification accuracy, ROC, F-measure, and computational times of training SVM and SVM ensembles are compared. The experimental results show that linear kernel based SVM ensembles based on the bagging method and RBF kernel based SVM ensembles with the boosting method can be the better choices for a small scale dataset, where feature selection should be performed in the data pre-processing stage. For a large scale dataset, RBF kernel based SVM ensembles based on boosting perform better than the other classifiers.

  1. SVM and SVM Ensembles in Breast Cancer Prediction.

    Directory of Open Access Journals (Sweden)

    Min-Wei Huang

    Full Text Available Breast cancer is an all too common disease in women, making how to effectively predict it an active research problem. A number of statistical and machine learning techniques have been employed to develop various breast cancer prediction models. Among them, support vector machines (SVM have been shown to outperform many related techniques. To construct the SVM classifier, it is first necessary to decide the kernel function, and different kernel functions can result in different prediction performance. However, there have been very few studies focused on examining the prediction performances of SVM based on different kernel functions. Moreover, it is unknown whether SVM classifier ensembles which have been proposed to improve the performance of single classifiers can outperform single SVM classifiers in terms of breast cancer prediction. Therefore, the aim of this paper is to fully assess the prediction performance of SVM and SVM ensembles over small and large scale breast cancer datasets. The classification accuracy, ROC, F-measure, and computational times of training SVM and SVM ensembles are compared. The experimental results show that linear kernel based SVM ensembles based on the bagging method and RBF kernel based SVM ensembles with the boosting method can be the better choices for a small scale dataset, where feature selection should be performed in the data pre-processing stage. For a large scale dataset, RBF kernel based SVM ensembles based on boosting perform better than the other classifiers.

  2. Credit scoring using ensemble of various classifiers on reduced feature set

    Directory of Open Access Journals (Sweden)

    Dahiya Shashi

    2015-01-01

    Full Text Available Credit scoring methods are widely used for evaluating loan applications in financial and banking institutions. Credit score identifies if applicant customers belong to good risk applicant group or a bad risk applicant group. These decisions are based on the demographic data of the customers, overall business by the customer with bank, and loan payment history of the loan applicants. The advantages of using credit scoring models include reducing the cost of credit analysis, enabling faster credit decisions and diminishing possible risk. Many statistical and machine learning techniques such as Logistic Regression, Support Vector Machines, Neural Networks and Decision tree algorithms have been used independently and as hybrid credit scoring models. This paper proposes an ensemble based technique combining seven individual models to increase the classification accuracy. Feature selection has also been used for selecting important attributes for classification. Cross classification was conducted using three data partitions. German credit dataset having 1000 instances and 21 attributes is used in the present study. The results of the experiments revealed that the ensemble model yielded a very good accuracy when compared to individual models. In all three different partitions, the ensemble model was able to classify more than 80% of the loan customers as good creditors correctly. Also, for 70:30 partition there was a good impact of feature selection on the accuracy of classifiers. The results were improved for almost all individual models including the ensemble model.

  3. Inhibition of proteasomal proteolysis affects expression of extracellular matrix components and steroidogenesis in porcine oocyte-cumulus complexes

    Czech Academy of Sciences Publication Activity Database

    Nagyová, Eva; Scsuková, S.; Němcová, Lucie; Mlynarčíková, A.; Yi, Y.J.; Sutovky, M.; Sutovsky, P.

    2012-01-01

    Roč. 42, č. 1 (2012), s. 50-62 ISSN 0739-7240 R&D Projects: GA ČR GAP502/11/0593 Institutional research plan: CEZ:AV0Z50450515 Keywords : Oocyte-cumulus complex * TNFAIP6 * HAS2 * Progesterone * Ubiquitin * Proteasome Subject RIV: ED - Physiology Impact factor: 2.377, year: 2012

  4. Uncertainty analysis of neural network based flood forecasting models: An ensemble based approach for constructing prediction interval

    Science.gov (United States)

    Kasiviswanathan, K.; Sudheer, K.

    2013-05-01

    Artificial neural network (ANN) based hydrologic models have gained lot of attention among water resources engineers and scientists, owing to their potential for accurate prediction of flood flows as compared to conceptual or physics based hydrologic models. The ANN approximates the non-linear functional relationship between the complex hydrologic variables in arriving at the river flow forecast values. Despite a large number of applications, there is still some criticism that ANN's point prediction lacks in reliability since the uncertainty of predictions are not quantified, and it limits its use in practical applications. A major concern in application of traditional uncertainty analysis techniques on neural network framework is its parallel computing architecture with large degrees of freedom, which makes the uncertainty assessment a challenging task. Very limited studies have considered assessment of predictive uncertainty of ANN based hydrologic models. In this study, a novel method is proposed that help construct the prediction interval of ANN flood forecasting model during calibration itself. The method is designed to have two stages of optimization during calibration: at stage 1, the ANN model is trained with genetic algorithm (GA) to obtain optimal set of weights and biases vector, and during stage 2, the optimal variability of ANN parameters (obtained in stage 1) is identified so as to create an ensemble of predictions. During the 2nd stage, the optimization is performed with multiple objectives, (i) minimum residual variance for the ensemble mean, (ii) maximum measured data points to fall within the estimated prediction interval and (iii) minimum width of prediction interval. The method is illustrated using a real world case study of an Indian basin. The method was able to produce an ensemble that has an average prediction interval width of 23.03 m3/s, with 97.17% of the total validation data points (measured) lying within the interval. The derived

  5. Robustness of the far-field response of nonlocal plasmonic ensembles

    DEFF Research Database (Denmark)

    Tserkezis, Christos; Maack, Johan Rosenkrantz; Liu, Zhaowei

    2016-01-01

    Contrary to classical predictions, the optical response of few-nm plasmonic particles depends on particle size due to effects such as nonlocality and electron spill-out. Ensembles of such nanoparticles are therefore expected to exhibit a nonclassical inhomogeneous spectral broadening due to size...... distribution. For a normal distribution of free-electron nanoparticles, and within the simple nonlocal hydrodynamic Drude model, both the nonlocal blueshift and the plasmon linewidth are shown to be considerably affected by ensemble averaging. Size-variance effects tend however to conceal nonlocality...... to a lesser extent when the homogeneous size-dependent broadening of individual nanoparticles is taken into account, either through a local size-dependent damping model or through the Generalized Nonlocal Optical Response theory. The role of ensemble averaging is further explored in realistic distributions...

  6. Ensemble Solar Forecasting Statistical Quantification and Sensitivity Analysis: Preprint

    Energy Technology Data Exchange (ETDEWEB)

    Cheung, WanYin; Zhang, Jie; Florita, Anthony; Hodge, Bri-Mathias; Lu, Siyuan; Hamann, Hendrik F.; Sun, Qian; Lehman, Brad

    2015-12-08

    Uncertainties associated with solar forecasts present challenges to maintain grid reliability, especially at high solar penetrations. This study aims to quantify the errors associated with the day-ahead solar forecast parameters and the theoretical solar power output for a 51-kW solar power plant in a utility area in the state of Vermont, U.S. Forecasts were generated by three numerical weather prediction (NWP) models, including the Rapid Refresh, the High Resolution Rapid Refresh, and the North American Model, and a machine-learning ensemble model. A photovoltaic (PV) performance model was adopted to calculate theoretical solar power generation using the forecast parameters (e.g., irradiance, cell temperature, and wind speed). Errors of the power outputs were quantified using statistical moments and a suite of metrics, such as the normalized root mean squared error (NRMSE). In addition, the PV model's sensitivity to different forecast parameters was quantified and analyzed. Results showed that the ensemble model yielded forecasts in all parameters with the smallest NRMSE. The NRMSE of solar irradiance forecasts of the ensemble NWP model was reduced by 28.10% compared to the best of the three NWP models. Further, the sensitivity analysis indicated that the errors of the forecasted cell temperature attributed only approximately 0.12% to the NRMSE of the power output as opposed to 7.44% from the forecasted solar irradiance.

  7. Skill of Global Raw and Postprocessed Ensemble Predictions of Rainfall over Northern Tropical Africa

    Science.gov (United States)

    Vogel, Peter; Knippertz, Peter; Fink, Andreas H.; Schlueter, Andreas; Gneiting, Tilmann

    2018-04-01

    Accumulated precipitation forecasts are of high socioeconomic importance for agriculturally dominated societies in northern tropical Africa. In this study, we analyze the performance of nine operational global ensemble prediction systems (EPSs) relative to climatology-based forecasts for 1 to 5-day accumulated precipitation based on the monsoon seasons 2007-2014 for three regions within northern tropical Africa. To assess the full potential of raw ensemble forecasts across spatial scales, we apply state-of-the-art statistical postprocessing methods in form of Bayesian Model Averaging (BMA) and Ensemble Model Output Statistics (EMOS), and verify against station and spatially aggregated, satellite-based gridded observations. Raw ensemble forecasts are uncalibrated, unreliable, and underperform relative to climatology, independently of region, accumulation time, monsoon season, and ensemble. Differences between raw ensemble and climatological forecasts are large, and partly stem from poor prediction for low precipitation amounts. BMA and EMOS postprocessed forecasts are calibrated, reliable, and strongly improve on the raw ensembles, but - somewhat disappointingly - typically do not outperform climatology. Most EPSs exhibit slight improvements over the period 2007-2014, but overall have little added value compared to climatology. We suspect that the parametrization of convection is a potential cause for the sobering lack of ensemble forecast skill in a region dominated by mesoscale convective systems.

  8. Three-dimensional classical-ensemble modeling of non-sequential double ionization

    International Nuclear Information System (INIS)

    Haan, S.L.; Breen, L.; Tannor, D.; Panfili, R.; Ho, Phay J.; Eberly, J.H.

    2005-01-01

    Full text: We have been using 1d ensembles of classical two-electron atoms to simulate helium atoms that are exposed to pulses of intense laser radiation. In this talk we discuss the challenges in setting up a 3d classical ensemble that can mimic the quantum ground state of helium. We then report studies in which each one of 500,000 two-electron trajectories is followed in 3d through a ten-cycle (25 fs) 780 nm laser pulse. We examine double-ionization yield for various intensities, finding the familiar knee structure. We consider the momentum spread of outcoming electrons in directions both parallel and perpendicular to the direction of laser polarization, and find results that are consistent with experiment. We examine individual trajectories and recollision processes that lead to double ionization, considering the best phases of the laser cycle for recollision events and looking at the possible time delay between recollision and emergence. We consider also the number of recollision events, and find that multiple recollisions are common in the classical ensemble. We investigate which collisional processes lead to various final electron momenta. We conclude with comments regarding the ability of classical mechanics to describe non-sequential double ionization, and a quick summary of similarities and differences between 1d and 3d classical double ionization using energy-trajectory comparisons. Refs. 3 (author)

  9. Ensemble methods for handwritten digit recognition

    DEFF Research Database (Denmark)

    Hansen, Lars Kai; Liisberg, Christian; Salamon, P.

    1992-01-01

    Neural network ensembles are applied to handwritten digit recognition. The individual networks of the ensemble are combinations of sparse look-up tables (LUTs) with random receptive fields. It is shown that the consensus of a group of networks outperforms the best individual of the ensemble....... It is further shown that it is possible to estimate the ensemble performance as well as the learning curve on a medium-size database. In addition the authors present preliminary analysis of experiments on a large database and show that state-of-the-art performance can be obtained using the ensemble approach...... by optimizing the receptive fields. It is concluded that it is possible to improve performance significantly by introducing moderate-size ensembles; in particular, a 20-25% improvement has been found. The ensemble random LUTs, when trained on a medium-size database, reach a performance (without rejects) of 94...

  10. Making decisions based on an imperfect ensemble of climate simulators: strategies and future directions

    Science.gov (United States)

    Sanderson, B. M.

    2017-12-01

    The CMIP ensembles represent the most comprehensive source of information available to decision-makers for climate adaptation, yet it is clear that there are fundamental limitations in our ability to treat the ensemble as an unbiased sample of possible future climate trajectories. There is considerable evidence that models are not independent, and increasing complexity and resolution combined with computational constraints prevent a thorough exploration of parametric uncertainty or internal variability. Although more data than ever is available for calibration, the optimization of each model is influenced by institutional priorities, historical precedent and available resources. The resulting ensemble thus represents a miscellany of climate simulators which defy traditional statistical interpretation. Models are in some cases interdependent, but are sufficiently complex that the degree of interdependency is conditional on the application. Configurations have been updated using available observations to some degree, but not in a consistent or easily identifiable fashion. This means that the ensemble cannot be viewed as a true posterior distribution updated by available data, but nor can observational data alone be used to assess individual model likelihood. We assess recent literature for combining projections from an imperfect ensemble of climate simulators. Beginning with our published methodology for addressing model interdependency and skill in the weighting scheme for the 4th US National Climate Assessment, we consider strategies for incorporating process-based constraints on future response, perturbed parameter experiments and multi-model output into an integrated framework. We focus on a number of guiding questions: Is the traditional framework of confidence in projections inferred from model agreement leading to biased or misleading conclusions? Can the benefits of upweighting skillful models be reconciled with the increased risk of truth lying outside the

  11. Climateprediction.com: Public Involvement, Multi-Million Member Ensembles and Systematic Uncertainty Analysis

    Science.gov (United States)

    Stainforth, D. A.; Allen, M.; Kettleborough, J.; Collins, M.; Heaps, A.; Stott, P.; Wehner, M.

    2001-12-01

    The climateprediction.com project is preparing to carry out the first systematic uncertainty analysis of climate forecasts using large ensembles of GCM climate simulations. This will be done by involving schools, businesses and members of the public, and utilizing the novel technology of distributed computing. Each participant will be asked to run one member of the ensemble on their PC. The model used will initially be the UK Met Office's Unified Model (UM). It will be run under Windows and software will be provided to enable those involved to view their model output as it develops. The project will use this method to carry out large perturbed physics GCM ensembles and thereby analyse the uncertainty in the forecasts from such models. Each participant/ensemble member will therefore have a version of the UM in which certain aspects of the model physics have been perturbed from their default values. Of course the non-linear nature of the system means that it will be necessary to look not just at perturbations to individual parameters in specific schemes, such as the cloud parameterization, but also to the many combinations of perturbations. This rapidly leads to the need for very large, perhaps multi-million member ensembles, which could only be undertaken using the distributed computing methodology. The status of the project will be presented and the Windows client will be demonstrated. In addition, initial results will be presented from beta test runs using a demo release for Linux PCs and Alpha workstations. Although small by comparison to the whole project, these pilot results constitute a 20-50 member perturbed physics climate ensemble with results indicating how climate sensitivity can be substantially affected by individual parameter values in the cloud scheme.

  12. A Brief Tutorial on the Ensemble Kalman Filter

    OpenAIRE

    Mandel, Jan

    2009-01-01

    The ensemble Kalman filter (EnKF) is a recursive filter suitable for problems with a large number of variables, such as discretizations of partial differential equations in geophysical models. The EnKF originated as a version of the Kalman filter for large problems (essentially, the covariance matrix is replaced by the sample covariance), and it is now an important data assimilation component of ensemble forecasting. EnKF is related to the particle filter (in this context, a particle is the s...

  13. Eigenfunction statistics of Wishart Brownian ensembles

    International Nuclear Information System (INIS)

    Shukla, Pragya

    2017-01-01

    We theoretically analyze the eigenfunction fluctuation measures for a Hermitian ensemble which appears as an intermediate state of the perturbation of a stationary ensemble by another stationary ensemble of Wishart (Laguerre) type. Similar to the perturbation by a Gaussian stationary ensemble, the measures undergo a diffusive dynamics in terms of the perturbation parameter but the energy-dependence of the fluctuations is different in the two cases. This may have important consequences for the eigenfunction dynamics as well as phase transition studies in many areas of complexity where Brownian ensembles appear. (paper)

  14. Bayesian model ensembling using meta-trained recurrent neural networks

    NARCIS (Netherlands)

    Ambrogioni, L.; Berezutskaya, Y.; Gü ç lü , U.; Borne, E.W.P. van den; Gü ç lü tü rk, Y.; Gerven, M.A.J. van; Maris, E.G.G.

    2017-01-01

    In this paper we demonstrate that a recurrent neural network meta-trained on an ensemble of arbitrary classification tasks can be used as an approximation of the Bayes optimal classifier. This result is obtained by relying on the framework of e-free approximate Bayesian inference, where the Bayesian

  15. Enhancing COSMO-DE ensemble forecasts by inexpensive techniques

    Directory of Open Access Journals (Sweden)

    Zied Ben Bouallègue

    2013-02-01

    Full Text Available COSMO-DE-EPS, a convection-permitting ensemble prediction system based on the high-resolution numerical weather prediction model COSMO-DE, is pre-operational since December 2010, providing probabilistic forecasts which cover Germany. This ensemble system comprises 20 members based on variations of the lateral boundary conditions, the physics parameterizations and the initial conditions. In order to increase the sample size in a computationally inexpensive way, COSMO-DE-EPS is combined with alternative ensemble techniques: the neighborhood method and the time-lagged approach. Their impact on the quality of the resulting probabilistic forecasts is assessed. Objective verification is performed over a six months period, scores based on the Brier score and its decomposition are shown for June 2011. The combination of the ensemble system with the alternative approaches improves probabilistic forecasts of precipitation in particular for high precipitation thresholds. Moreover, combining COSMO-DE-EPS with only the time-lagged approach improves the skill of area probabilities for precipitation and does not deteriorate the skill of 2 m-temperature and wind gusts forecasts.

  16. Extending prematuration with cAMP modulators enhances the cumulus contribution to oocyte antioxidant defence and oocyte quality via gap junctions.

    Science.gov (United States)

    Li, H J; Sutton-McDowall, M L; Wang, X; Sugimura, S; Thompson, J G; Gilchrist, R B

    2016-04-01

    Can bovine oocyte antioxidant defence and oocyte quality be improved by extending the duration of pre-in vitro maturation (IVM) with cyclic adenosine mono-phosphate (cAMP) modulators? Lengthening the duration of cAMP-modulated pre-IVM elevates intra-oocyte reduced glutathione (GSH) content and reduces hydrogen peroxide (H2O2) via increased cumulus cell-oocyte gap-junctional communication (GJC), associated with an improvement in subsequent embryo development and quality. Oocytes are susceptible to oxidative stress and the oocyte's most important antioxidant glutathione is supplied, at least in part, by cumulus cells. A temporary inhibition of spontaneous meiotic resumption in oocytes can be achieved by preventing a fall in cAMP, and cyclic AMP-modulated pre-IVM maintains cumulus-oocyte GJC and improves subsequent embryo development. This study consisted of a series of 10 experiments using bovine oocytes in vitro, each with multiple replicates. A range of pre-IVM durations were examined as the key study treatments which were compared with a control. The study was designed to examine if one of the oocyte's major antioxidant defences can be enhanced by pre-IVM with cAMP modulators, and to examine the contribution of cumulus-oocyte GJC on these processes. Immature bovine cumulus-oocyte complexes were treated in vitro without (control) or with the cAMP modulators; 100 µM forskolin (FSK) and 500 µM 3-isobutyl-1-methyxanthine (IBMX), for 0, 2, 4 or 6 h (pre-IVM phase) prior to IVM. Oocyte developmental competence was assessed by embryo development and quality post-IVM/IVF. Cumulus-oocyte GJC, intra-oocyte GSH and H2O2 were quantified at various time points during pre-IVM and IVM, in the presence and the absence of functional inhibitors: carbenoxolone (CBX) to block GJC and buthionine sulfoximide (BSO) to inhibit glutathione synthesis. Pre-IVM with FSK + IBMX increased subsequent blastocyst formation rate and quality compared with standard IVM (P gap junctions between

  17. Measuring social interaction in music ensembles.

    Science.gov (United States)

    Volpe, Gualtiero; D'Ausilio, Alessandro; Badino, Leonardo; Camurri, Antonio; Fadiga, Luciano

    2016-05-05

    Music ensembles are an ideal test-bed for quantitative analysis of social interaction. Music is an inherently social activity, and music ensembles offer a broad variety of scenarios which are particularly suitable for investigation. Small ensembles, such as string quartets, are deemed a significant example of self-managed teams, where all musicians contribute equally to a task. In bigger ensembles, such as orchestras, the relationship between a leader (the conductor) and a group of followers (the musicians) clearly emerges. This paper presents an overview of recent research on social interaction in music ensembles with a particular focus on (i) studies from cognitive neuroscience; and (ii) studies adopting a computational approach for carrying out automatic quantitative analysis of ensemble music performances. © 2016 The Author(s).

  18. River Flow Prediction Using the Nearest Neighbor Probabilistic Ensemble Method

    Directory of Open Access Journals (Sweden)

    H. Sanikhani

    2016-02-01

    Full Text Available Introduction: In the recent years, researchers interested on probabilistic forecasting of hydrologic variables such river flow.A probabilistic approach aims at quantifying the prediction reliability through a probability distribution function or a prediction interval for the unknown future value. The evaluation of the uncertainty associated to the forecast is seen as a fundamental information, not only to correctly assess the prediction, but also to compare forecasts from different methods and to evaluate actions and decisions conditionally on the expected values. Several probabilistic approaches have been proposed in the literature, including (1 methods that use resampling techniques to assess parameter and model uncertainty, such as the Metropolis algorithm or the Generalized Likelihood Uncertainty Estimation (GLUE methodology for an application to runoff prediction, (2 methods based on processing the forecast errors of past data to produce the probability distributions of future values and (3 methods that evaluate how the uncertainty propagates from the rainfall forecast to the river discharge prediction, as the Bayesian forecasting system. Materials and Methods: In this study, two different probabilistic methods are used for river flow prediction.Then the uncertainty related to the forecast is quantified. One approach is based on linear predictors and in the other, nearest neighbor was used. The nonlinear probabilistic ensemble can be used for nonlinear time series analysis using locally linear predictors, while NNPE utilize a method adapted for one step ahead nearest neighbor methods. In this regard, daily river discharge (twelve years of Dizaj and Mashin Stations on Baranduz-Chay basin in west Azerbijan and Zard-River basin in Khouzestan provinces were used, respectively. The first six years of data was applied for fitting the model. The next three years was used to calibration and the remained three yeas utilized for testing the models

  19. An ensemble based nonlinear orthogonal matching pursuit algorithm for sparse history matching of reservoir models

    KAUST Repository

    Fsheikh, Ahmed H.; Wheeler, Mary Fanett; Hoteit, Ibrahim

    2013-01-01

    the dictionary, the solution is obtained by applying Tikhonov regularization. The proposed algorithm relies on approximate gradient estimation using an iterative stochastic ensemble method (ISEM). ISEM utilizes an ensemble of directional derivatives

  20. Curve Boxplot: Generalization of Boxplot for Ensembles of Curves.

    Science.gov (United States)

    Mirzargar, Mahsa; Whitaker, Ross T; Kirby, Robert M

    2014-12-01

    In simulation science, computational scientists often study the behavior of their simulations by repeated solutions with variations in parameters and/or boundary values or initial conditions. Through such simulation ensembles, one can try to understand or quantify the variability or uncertainty in a solution as a function of the various inputs or model assumptions. In response to a growing interest in simulation ensembles, the visualization community has developed a suite of methods for allowing users to observe and understand the properties of these ensembles in an efficient and effective manner. An important aspect of visualizing simulations is the analysis of derived features, often represented as points, surfaces, or curves. In this paper, we present a novel, nonparametric method for summarizing ensembles of 2D and 3D curves. We propose an extension of a method from descriptive statistics, data depth, to curves. We also demonstrate a set of rendering and visualization strategies for showing rank statistics of an ensemble of curves, which is a generalization of traditional whisker plots or boxplots to multidimensional curves. Results are presented for applications in neuroimaging, hurricane forecasting and fluid dynamics.

  1. Joys of Community Ensemble Playing: The Case of the Happy Roll Elastic Ensemble in Taiwan

    Science.gov (United States)

    Hsieh, Yuan-Mei; Kao, Kai-Chi

    2012-01-01

    The Happy Roll Elastic Ensemble (HREE) is a community music ensemble supported by Tainan Culture Centre in Taiwan. With enjoyment and friendship as its primary goals, it aims to facilitate the joys of ensemble playing and the spirit of social networking. This article highlights the key aspects of HREE's development in its first two years…

  2. A short-term ensemble wind speed forecasting system for wind power applications

    Science.gov (United States)

    Baidya Roy, S.; Traiteur, J. J.; Callicutt, D.; Smith, M.

    2011-12-01

    This study develops an adaptive, blended forecasting system to provide accurate wind speed forecasts 1 hour ahead of time for wind power applications. The system consists of an ensemble of 21 forecasts with different configurations of the Weather Research and Forecasting Single Column Model (WRFSCM) and a persistence model. The ensemble is calibrated against observations for a 2 month period (June-July, 2008) at a potential wind farm site in Illinois using the Bayesian Model Averaging (BMA) technique. The forecasting system is evaluated against observations for August 2008 at the same site. The calibrated ensemble forecasts significantly outperform the forecasts from the uncalibrated ensemble while significantly reducing forecast uncertainty under all environmental stability conditions. The system also generates significantly better forecasts than persistence, autoregressive (AR) and autoregressive moving average (ARMA) models during the morning transition and the diurnal convective regimes. This forecasting system is computationally more efficient than traditional numerical weather prediction models and can generate a calibrated forecast, including model runs and calibration, in approximately 1 minute. Currently, hour-ahead wind speed forecasts are almost exclusively produced using statistical models. However, numerical models have several distinct advantages over statistical models including the potential to provide turbulence forecasts. Hence, there is an urgent need to explore the role of numerical models in short-term wind speed forecasting. This work is a step in that direction and is likely to trigger a debate within the wind speed forecasting community.

  3. Time-dependent generalized Gibbs ensembles in open quantum systems

    Science.gov (United States)

    Lange, Florian; Lenarčič, Zala; Rosch, Achim

    2018-04-01

    Generalized Gibbs ensembles have been used as powerful tools to describe the steady state of integrable many-particle quantum systems after a sudden change of the Hamiltonian. Here, we demonstrate numerically that they can be used for a much broader class of problems. We consider integrable systems in the presence of weak perturbations which break both integrability and drive the system to a state far from equilibrium. Under these conditions, we show that the steady state and the time evolution on long timescales can be accurately described by a (truncated) generalized Gibbs ensemble with time-dependent Lagrange parameters, determined from simple rate equations. We compare the numerically exact time evolutions of density matrices for small systems with a theory based on block-diagonal density matrices (diagonal ensemble) and a time-dependent generalized Gibbs ensemble containing only a small number of approximately conserved quantities, using the one-dimensional Heisenberg model with perturbations described by Lindblad operators as an example.

  4. Assessing uncertainties in flood forecasts for decision making: prototype of an operational flood management system integrating ensemble predictions

    Directory of Open Access Journals (Sweden)

    J. Dietrich

    2009-08-01

    Full Text Available Ensemble forecasts aim at framing the uncertainties of the potential future development of the hydro-meteorological situation. A probabilistic evaluation can be used to communicate forecast uncertainty to decision makers. Here an operational system for ensemble based flood forecasting is presented, which combines forecasts from the European COSMO-LEPS, SRNWP-PEPS and COSMO-DE prediction systems. A multi-model lagged average super-ensemble is generated by recombining members from different runs of these meteorological forecast systems. A subset of the super-ensemble is selected based on a priori model weights, which are obtained from ensemble calibration. Flood forecasts are simulated by the conceptual rainfall-runoff-model ArcEGMO. Parameter uncertainty of the model is represented by a parameter ensemble, which is a priori generated from a comprehensive uncertainty analysis during model calibration. The use of a computationally efficient hydrological model within a flood management system allows us to compute the hydro-meteorological model chain for all members of the sub-ensemble. The model chain is not re-computed before new ensemble forecasts are available, but the probabilistic assessment of the output is updated when new information from deterministic short range forecasts or from assimilation of measured data becomes available. For hydraulic modelling, with the desired result of a probabilistic inundation map with high spatial resolution, a replacement model can help to overcome computational limitations. A prototype of the developed framework has been applied for a case study in the Mulde river basin. However these techniques, in particular the probabilistic assessment and the derivation of decision rules are still in their infancy. Further research is necessary and promising.

  5. Managing uncertainty in metabolic network structure and improving predictions using EnsembleFBA.

    Directory of Open Access Journals (Sweden)

    Matthew B Biggs

    2017-03-01

    Full Text Available Genome-scale metabolic network reconstructions (GENREs are repositories of knowledge about the metabolic processes that occur in an organism. GENREs have been used to discover and interpret metabolic functions, and to engineer novel network structures. A major barrier preventing more widespread use of GENREs, particularly to study non-model organisms, is the extensive time required to produce a high-quality GENRE. Many automated approaches have been developed which reduce this time requirement, but automatically-reconstructed draft GENREs still require curation before useful predictions can be made. We present a novel approach to the analysis of GENREs which improves the predictive capabilities of draft GENREs by representing many alternative network structures, all equally consistent with available data, and generating predictions from this ensemble. This ensemble approach is compatible with many reconstruction methods. We refer to this new approach as Ensemble Flux Balance Analysis (EnsembleFBA. We validate EnsembleFBA by predicting growth and gene essentiality in the model organism Pseudomonas aeruginosa UCBPP-PA14. We demonstrate how EnsembleFBA can be included in a systems biology workflow by predicting essential genes in six Streptococcus species and mapping the essential genes to small molecule ligands from DrugBank. We found that some metabolic subsystems contributed disproportionately to the set of predicted essential reactions in a way that was unique to each Streptococcus species, leading to species-specific outcomes from small molecule interactions. Through our analyses of P. aeruginosa and six Streptococci, we show that ensembles increase the quality of predictions without drastically increasing reconstruction time, thus making GENRE approaches more practical for applications which require predictions for many non-model organisms. All of our functions and accompanying example code are available in an open online repository.

  6. Wave ensemble forecast system for tropical cyclones in the Australian region

    Science.gov (United States)

    Zieger, Stefan; Greenslade, Diana; Kepert, Jeffrey D.

    2018-05-01

    Forecasting of waves under extreme conditions such as tropical cyclones is vitally important for many offshore industries, but there remain many challenges. For Northwest Western Australia (NW WA), wave forecasts issued by the Australian Bureau of Meteorology have previously been limited to products from deterministic operational wave models forced by deterministic atmospheric models. The wave models are run over global (resolution 1/4∘) and regional (resolution 1/10∘) domains with forecast ranges of + 7 and + 3 day respectively. Because of this relatively coarse resolution (both in the wave models and in the forcing fields), the accuracy of these products is limited under tropical cyclone conditions. Given this limited accuracy, a new ensemble-based wave forecasting system for the NW WA region has been developed. To achieve this, a new dedicated 8-km resolution grid was nested in the global wave model. Over this grid, the wave model is forced with winds from a bias-corrected European Centre for Medium Range Weather Forecast atmospheric ensemble that comprises 51 ensemble members to take into account the uncertainties in location, intensity and structure of a tropical cyclone system. A unique technique is used to select restart files for each wave ensemble member. The system is designed to operate in real time during the cyclone season providing + 10-day forecasts. This paper will describe the wave forecast components of this system and present the verification metrics and skill for specific events.

  7. An ensemble approach to simulate CO2 emissions from natural fires

    Science.gov (United States)

    Eliseev, A. V.; Mokhov, I. I.; Chernokulsky, A. V.

    2014-06-01

    This paper presents ensemble simulations with the global climate model developed at the A. M. Obukhov Institute of Atmospheric Physics, Russian Academy of Sciences (IAP RAS CM). These simulations are forced by historical reconstructions of concentrations of well-mixed greenhouse gases (CO2, CH4, and N2O), sulfate aerosols (both in the troposphere and stratosphere), extent of crops and pastures, and total solar irradiance for AD 850-2005 (hereafter all years are taken as being AD) and by the Representative Concentration Pathway (RCP) scenarios for the same forcing agents until the year 2300. Our model implements GlobFIRM (Global FIRe Model) as a scheme for calculating characteristics of natural fires. Comparing to the original GlobFIRM model, in our implementation, the scheme is extended by a module accounting for CO2 release from soil during fires. The novel approach of our paper is to simulate natural fires in an ensemble fashion. Different ensemble members in the present paper are constructed by varying the values of parameters of the natural fires module. These members are constrained by the GFED-3.1 data set for the burnt area and CO2 release from fires and further subjected to Bayesian averaging. Our simulations are the first coupled model assessment of future changes in gross characteristics of natural fires. In our model, the present-day (1998-2011) global area burnt due to natural fires is (2.1 ± 0.4) × 106 km2 yr-1 (ensemble mean and intra-ensemble standard deviation are presented), and the respective CO2 emissions to the atmosphere are (1.4 ± 0.2) Pg C yr-1. The latter value is in agreement with the corresponding GFED estimates. The area burnt by natural fires is generally larger than the GFED estimates except in boreal Eurasia, where it is realistic, and in Australia, where it is smaller than these estimates. Regionally, the modelled CO2 emissions are larger (smaller) than the GFED estimates in Europe (in the tropics and north-eastern Eurasia). From

  8. ENSEMBLE and AMET: Two Systems and Approaches to a Harmonized, Simplified and Efficient Facility for Air Quality Models Development and Evaluation

    Science.gov (United States)

    The complexity of air quality modeling systems, air quality monitoring data make ad-hoc systems for model evaluation important aids to the modeling community. Among those are the ENSEMBLE system developed by the EC-Joint Research Center, and the AMET software developed by the US-...

  9. Skill and reliability of climate model ensembles at the Last Glacial Maximum and mid-Holocene

    Directory of Open Access Journals (Sweden)

    J. C. Hargreaves

    2013-03-01

    Full Text Available Paleoclimate simulations provide us with an opportunity to critically confront and evaluate the performance of climate models in simulating the response of the climate system to changes in radiative forcing and other boundary conditions. Hargreaves et al. (2011 analysed the reliability of the Paleoclimate Modelling Intercomparison Project, PMIP2 model ensemble with respect to the MARGO sea surface temperature data synthesis (MARGO Project Members, 2009 for the Last Glacial Maximum (LGM, 21 ka BP. Here we extend that work to include a new comprehensive collection of land surface data (Bartlein et al., 2011, and introduce a novel analysis of the predictive skill of the models. We include output from the PMIP3 experiments, from the two models for which suitable data are currently available. We also perform the same analyses for the PMIP2 mid-Holocene (6 ka BP ensembles and available proxy data sets. Our results are predominantly positive for the LGM, suggesting that as well as the global mean change, the models can reproduce the observed pattern of change on the broadest scales, such as the overall land–sea contrast and polar amplification, although the more detailed sub-continental scale patterns of change remains elusive. In contrast, our results for the mid-Holocene are substantially negative, with the models failing to reproduce the observed changes with any degree of skill. One cause of this problem could be that the globally- and annually-averaged forcing anomaly is very weak at the mid-Holocene, and so the results are dominated by the more localised regional patterns in the parts of globe for which data are available. The root cause of the model-data mismatch at these scales is unclear. If the proxy calibration is itself reliable, then representativity error in the data-model comparison, and missing climate feedbacks in the models are other possible sources of error.

  10. Embedded random matrix ensembles in quantum physics

    CERN Document Server

    Kota, V K B

    2014-01-01

    Although used with increasing frequency in many branches of physics, random matrix ensembles are not always sufficiently specific to account for important features of the physical system at hand. One refinement which retains the basic stochastic approach but allows for such features consists in the use of embedded ensembles.  The present text is an exhaustive introduction to and survey of this important field. Starting with an easy-to-read introduction to general random matrix theory, the text then develops the necessary concepts from the beginning, accompanying the reader to the frontiers of present-day research. With some notable exceptions, to date these ensembles have primarily been applied in nuclear spectroscopy. A characteristic example is the use of a random two-body interaction in the framework of the nuclear shell model. Yet, topics in atomic physics, mesoscopic physics, quantum information science and statistical mechanics of isolated finite quantum systems can also be addressed using these ensemb...

  11. Advances in snow cover distributed modelling via ensemble simulations and assimilation of satellite data

    Science.gov (United States)

    Revuelto, J.; Dumont, M.; Tuzet, F.; Vionnet, V.; Lafaysse, M.; Lecourt, G.; Vernay, M.; Morin, S.; Cosme, E.; Six, D.; Rabatel, A.

    2017-12-01

    Nowadays snowpack models show a good capability in simulating the evolution of snow in mountain areas. However singular deviations of meteorological forcing and shortcomings in the modelling of snow physical processes, when accumulated on time along a snow season, could produce large deviations from real snowpack state. The evaluation of these deviations is usually assessed with on-site observations from automatic weather stations. Nevertheless the location of these stations could strongly influence the results of these evaluations since local topography may have a marked influence on snowpack evolution. Despite the evaluation of snowpack models with automatic weather stations usually reveal good results, there exist a lack of large scale evaluations of simulations results on heterogeneous alpine terrain subjected to local topographic effects.This work firstly presents a complete evaluation of the detailed snowpack model Crocus over an extended mountain area, the Arve upper catchment (western European Alps). This catchment has a wide elevation range with a large area above 2000m a.s.l. and/or glaciated. The evaluation compares results obtained with distributed and semi-distributed simulations (the latter nowadays used on the operational forecasting). Daily observations of the snow covered area from MODIS satellite sensor, seasonal glacier surface mass balance evolution measured in more than 65 locations and the galciers annual equilibrium line altitude from Landsat/Spot/Aster satellites, have been used for model evaluation. Additionally the latest advances in producing ensemble snowpack simulations for assimilating satellite reflectance data over extended areas will be presented. These advances comprises the generation of an ensemble of downscaled high-resolution meteorological forcing from meso-scale meteorological models and the application of a particle filter scheme for assimilating satellite observations. Despite the results are prefatory, they show a good

  12. Ensembl Genomes 2016: more genomes, more complexity.

    Science.gov (United States)

    Kersey, Paul Julian; Allen, James E; Armean, Irina; Boddu, Sanjay; Bolt, Bruce J; Carvalho-Silva, Denise; Christensen, Mikkel; Davis, Paul; Falin, Lee J; Grabmueller, Christoph; Humphrey, Jay; Kerhornou, Arnaud; Khobova, Julia; Aranganathan, Naveen K; Langridge, Nicholas; Lowy, Ernesto; McDowall, Mark D; Maheswari, Uma; Nuhn, Michael; Ong, Chuang Kee; Overduin, Bert; Paulini, Michael; Pedro, Helder; Perry, Emily; Spudich, Giulietta; Tapanari, Electra; Walts, Brandon; Williams, Gareth; Tello-Ruiz, Marcela; Stein, Joshua; Wei, Sharon; Ware, Doreen; Bolser, Daniel M; Howe, Kevin L; Kulesha, Eugene; Lawson, Daniel; Maslen, Gareth; Staines, Daniel M

    2016-01-04

    Ensembl Genomes (http://www.ensemblgenomes.org) is an integrating resource for genome-scale data from non-vertebrate species, complementing the resources for vertebrate genomics developed in the context of the Ensembl project (http://www.ensembl.org). Together, the two resources provide a consistent set of programmatic and interactive interfaces to a rich range of data including reference sequence, gene models, transcriptional data, genetic variation and comparative analysis. This paper provides an update to the previous publications about the resource, with a focus on recent developments. These include the development of new analyses and views to represent polyploid genomes (of which bread wheat is the primary exemplar); and the continued up-scaling of the resource, which now includes over 23 000 bacterial genomes, 400 fungal genomes and 100 protist genomes, in addition to 55 genomes from invertebrate metazoa and 39 genomes from plants. This dramatic increase in the number of included genomes is one part of a broader effort to automate the integration of archival data (genome sequence, but also associated RNA sequence data and variant calls) within the context of reference genomes and make it available through the Ensembl user interfaces. © The Author(s) 2015. Published by Oxford University Press on behalf of Nucleic Acids Research.

  13. Improving the accuracy of flood forecasting with transpositions of ensemble NWP rainfall fields considering orographic effects

    Science.gov (United States)

    Yu, Wansik; Nakakita, Eiichi; Kim, Sunmin; Yamaguchi, Kosei

    2016-08-01

    The use of meteorological ensembles to produce sets of hydrological predictions increased the capability to issue flood warnings. However, space scale of the hydrological domain is still much finer than meteorological model, and NWP models have challenges with displacement. The main objective of this study to enhance the transposition method proposed in Yu et al. (2014) and to suggest the post-processing ensemble flood forecasting method for the real-time updating and the accuracy improvement of flood forecasts that considers the separation of the orographic rainfall and the correction of misplaced rain distributions using additional ensemble information through the transposition of rain distributions. In the first step of the proposed method, ensemble forecast rainfalls from a numerical weather prediction (NWP) model are separated into orographic and non-orographic rainfall fields using atmospheric variables and the extraction of topographic effect. Then the non-orographic rainfall fields are examined by the transposition scheme to produce additional ensemble information and new ensemble NWP rainfall fields are calculated by recombining the transposition results of non-orographic rain fields with separated orographic rainfall fields for a generation of place-corrected ensemble information. Then, the additional ensemble information is applied into a hydrologic model for post-flood forecasting with a 6-h interval. The newly proposed method has a clear advantage to improve the accuracy of mean value of ensemble flood forecasting. Our study is carried out and verified using the largest flood event by typhoon 'Talas' of 2011 over the two catchments, which are Futatsuno (356.1 km2) and Nanairo (182.1 km2) dam catchments of Shingu river basin (2360 km2), which is located in the Kii peninsula, Japan.

  14. Ensemble forecasting of potential habitat for three invasive fishes

    Science.gov (United States)

    Poulos, Helen M.; Chernoff, Barry; Fuller, Pam L.; Butman, David

    2012-01-01

    Aquatic invasive species pose major ecological and economic threats to aquatic ecosystems worldwide via displacement, predation, or hybridization with native species and the alteration of aquatic habitats and hydrologic cycles. Modeling the habitat suitability of alien aquatic species through spatially explicit mapping is an increasingly important risk assessment tool. Habitat modeling also facilitates identification of key environmental variables influencing invasive species distributions. We compared four modeling methods to predict the potential continental United States distributions of northern snakehead Channa argus (Cantor, 1842), round goby Neogobius melanostomus (Pallas, 1814), and silver carp Hypophthalmichthys molitrix (Valenciennes, 1844) using maximum entropy (Maxent), the genetic algorithm for rule set production (GARP), DOMAIN, and support vector machines (SVM). We used inventory records from the USGS Nonindigenous Aquatic Species Database and a geographic information system of 20 climatic and environmental variables to generate individual and ensemble distribution maps for each species. The ensemble maps from our study performed as well as or better than all of the individual models except Maxent. The ensemble and Maxent models produced significantly higher accuracy individual maps than GARP, one-class SVMs, or DOMAIN. The key environmental predictor variables in the individual models were consistent with the tolerances of each species. Results from this study provide insights into which locations and environmental conditions may promote the future spread of invasive fish in the US.

  15. Recognition of emotions using multimodal physiological signals and an ensemble deep learning model.

    Science.gov (United States)

    Yin, Zhong; Zhao, Mengyuan; Wang, Yongxiong; Yang, Jingdong; Zhang, Jianhua

    2017-03-01

    Using deep-learning methodologies to analyze multimodal physiological signals becomes increasingly attractive for recognizing human emotions. However, the conventional deep emotion classifiers may suffer from the drawback of the lack of the expertise for determining model structure and the oversimplification of combining multimodal feature abstractions. In this study, a multiple-fusion-layer based ensemble classifier of stacked autoencoder (MESAE) is proposed for recognizing emotions, in which the deep structure is identified based on a physiological-data-driven approach. Each SAE consists of three hidden layers to filter the unwanted noise in the physiological features and derives the stable feature representations. An additional deep model is used to achieve the SAE ensembles. The physiological features are split into several subsets according to different feature extraction approaches with each subset separately encoded by a SAE. The derived SAE abstractions are combined according to the physiological modality to create six sets of encodings, which are then fed to a three-layer, adjacent-graph-based network for feature fusion. The fused features are used to recognize binary arousal or valence states. DEAP multimodal database was employed to validate the performance of the MESAE. By comparing with the best existing emotion classifier, the mean of classification rate and F-score improves by 5.26%. The superiority of the MESAE against the state-of-the-art shallow and deep emotion classifiers has been demonstrated under different sizes of the available physiological instances. Copyright © 2016 Elsevier Ireland Ltd. All rights reserved.

  16. High resolution ensemble forecasting for the Gulf of Mexico eddies and fronts

    Science.gov (United States)

    Counillon, F.; Bertino, L.

    2007-05-01

    As oil production moves further into deeper waters, the costs related to strong current hazards are increasing accordingly, and accurate three-dimensional forecasts of currents are urgently needed. To be useful, models have to locate eddies and fronts to an accuracy of 30 km at a nowcast stage, which is almost impossible to accomplish with the use of satellite data of the same accuracy. The use of stochastic forecast allows us to give confidence of our prediction. We are using a nested configuration of the Hybrid coordinate ocean model (HYCOM), where the TOPAZ system, which covers the Atlantic and the Artic, gives lateral boundary condition to a high-resolution (5km) model of the Gulf of Mexico (GOM). TOPAZ is a real-time forecasting coupled ocean-ice model, which assimilates sea level anomaly (SLA), sea surface temperature, and sea ice concentration, with the ensemble Kalman filter. The high- resolution model assimilates SLA using the ensemble optimal interpolation, which updates accordingly the currents, salinity, temperature, and layer interface at all depths. Here, we evaluate the ensemble forecast capabilities of our high-resolution model, for eddy Extreme that has been observed from altimeters around the 15th of July. We run 6 successive ensemble runs composed of 10 members of equal likelihood. Members differ by perturbations of the initial state, of the lateral boundary conditions, and of the atmospheric boundary conditions. We have started the experiment 1 month prior to the shedding event, because it was the time necessary for perturbation of boundary conditions to spread uniformly and reach a significant level across the GOM. The ensemble reproduces well the dynamics of the eddy shedding and produces a significant spread at the boundary of the eddy, but underestimates the RMS error of the SLA. Prior to the shedding time, the error growth increase, induced by the highly non-linear growth of cyclonic eddies at the boundary of the Loop Current. Additionally

  17. Ensembl 2002: accommodating comparative genomics.

    Science.gov (United States)

    Clamp, M; Andrews, D; Barker, D; Bevan, P; Cameron, G; Chen, Y; Clark, L; Cox, T; Cuff, J; Curwen, V; Down, T; Durbin, R; Eyras, E; Gilbert, J; Hammond, M; Hubbard, T; Kasprzyk, A; Keefe, D; Lehvaslaiho, H; Iyer, V; Melsopp, C; Mongin, E; Pettett, R; Potter, S; Rust, A; Schmidt, E; Searle, S; Slater, G; Smith, J; Spooner, W; Stabenau, A; Stalker, J; Stupka, E; Ureta-Vidal, A; Vastrik, I; Birney, E

    2003-01-01

    The Ensembl (http://www.ensembl.org/) database project provides a bioinformatics framework to organise biology around the sequences of large genomes. It is a comprehensive source of stable automatic annotation of human, mouse and other genome sequences, available as either an interactive web site or as flat files. Ensembl also integrates manually annotated gene structures from external sources where available. As well as being one of the leading sources of genome annotation, Ensembl is an open source software engineering project to develop a portable system able to handle very large genomes and associated requirements. These range from sequence analysis to data storage and visualisation and installations exist around the world in both companies and at academic sites. With both human and mouse genome sequences available and more vertebrate sequences to follow, many of the recent developments in Ensembl have focusing on developing automatic comparative genome analysis and visualisation.

  18. The classicality and quantumness of a quantum ensemble

    International Nuclear Information System (INIS)

    Zhu Xuanmin; Pang Shengshi; Wu Shengjun; Liu Quanhui

    2011-01-01

    In this Letter, we investigate the classicality and quantumness of a quantum ensemble. We define a quantity called ensemble classicality based on classical cloning strategy (ECCC) to characterize how classical a quantum ensemble is. An ensemble of commuting states has a unit ECCC, while a general ensemble can have a ECCC less than 1. We also study how quantum an ensemble is by defining a related quantity called quantumness. We find that the classicality of an ensemble is closely related to how perfectly the ensemble can be cloned, and that the quantumness of the ensemble used in a quantum key distribution (QKD) protocol is exactly the attainable lower bound of the error rate in the sifted key. - Highlights: → A quantity is defined to characterize how classical a quantum ensemble is. → The classicality of an ensemble is closely related to the cloning performance. → Another quantity is also defined to investigate how quantum an ensemble is. → This quantity gives the lower bound of the error rate in a QKD protocol.

  19. Spatial clustering of summer temperature maxima from the CNRM-CM5 climate model ensembles & E-OBS over Europe

    OpenAIRE

    Margot Bador; Philippe Naveau; Eric Gilleland; Mercè Castellà; Tatiana Arivelo

    2015-01-01

    Reducing the dimensionality of the complex spatio-temporal variables associated with climate modeling, especially ensembles of climate models, is a challenging and important objective. For studies of detection and attribution, it is especially important to maintain information related to the extreme values of the atmospheric processes. Typical methods for data reduction involve summarizing climate model output information through means and variances, which does not preserve any information ab...

  20. A new deterministic Ensemble Kalman Filter with one-step-ahead smoothing for storm surge forecasting

    KAUST Repository

    Raboudi, Naila

    2016-11-01

    The Ensemble Kalman Filter (EnKF) is a popular data assimilation method for state-parameter estimation. Following a sequential assimilation strategy, it breaks the problem into alternating cycles of forecast and analysis steps. In the forecast step, the dynamical model is used to integrate a stochastic sample approximating the state analysis distribution (called analysis ensemble) to obtain a forecast ensemble. In the analysis step, the forecast ensemble is updated with the incoming observation using a Kalman-like correction, which is then used for the next forecast step. In realistic large-scale applications, EnKFs are implemented with limited ensembles, and often poorly known model errors statistics, leading to a crude approximation of the forecast covariance. This strongly limits the filter performance. Recently, a new EnKF was proposed in [1] following a one-step-ahead smoothing strategy (EnKF-OSA), which involves an OSA smoothing of the state between two successive analysis. At each time step, EnKF-OSA exploits the observation twice. The incoming observation is first used to smooth the ensemble at the previous time step. The resulting smoothed ensemble is then integrated forward to compute a "pseudo forecast" ensemble, which is again updated with the same observation. The idea of constraining the state with future observations is to add more information in the estimation process in order to mitigate for the sub-optimal character of EnKF-like methods. The second EnKF-OSA "forecast" is computed from the smoothed ensemble and should therefore provide an improved background. In this work, we propose a deterministic variant of the EnKF-OSA, based on the Singular Evolutive Interpolated Ensemble Kalman (SEIK) filter. The motivation behind this is to avoid the observations perturbations of the EnKF in order to improve the scheme\\'s behavior when assimilating big data sets with small ensembles. The new SEIK-OSA scheme is implemented and its efficiency is demonstrated