WorldWideScience

Sample records for cucumber vegetables metadata

  1. Reducing whiteflies on cucumber using intercropping with less preferred vegetables

    Science.gov (United States)

    The effectiveness of four less preferred vegetables – celery, asparagus lettuce, Malabar spinach, and edible amaranth – were investigated for suppression of two biotypes of sweet potato whitefly, Bemisia tabaci (Gennadius) (Hemiptera: Aleyrodidae) on cucumber, Cucumis sativus L. (Cucurbitaceae). Int...

  2. Metadata

    CERN Document Server

    Zeng, Marcia Lei

    2016-01-01

    Metadata remains the solution for describing the explosively growing, complex world of digital information, and continues to be of paramount importance for information professionals. Providing a solid grounding in the variety and interrelationships among different metadata types, Zeng and Qin's thorough revision of their benchmark text offers a comprehensive look at the metadata schemas that exist in the world of library and information science and beyond, as well as the contexts in which they operate. Cementing its value as both an LIS text and a handy reference for professionals already in the field, this book: * Lays out the fundamentals of metadata, including principles of metadata, structures of metadata vocabularies, and metadata descriptions * Surveys metadata standards and their applications in distinct domains and for various communities of metadata practice * Examines metadata building blocks, from modelling to defining properties, and from designing application profiles to implementing value vocabu...

  3. Metadata

    CERN Document Server

    Pomerantz, Jeffrey

    2015-01-01

    When "metadata" became breaking news, appearing in stories about surveillance by the National Security Agency, many members of the public encountered this once-obscure term from information science for the first time. Should people be reassured that the NSA was "only" collecting metadata about phone calls -- information about the caller, the recipient, the time, the duration, the location -- and not recordings of the conversations themselves? Or does phone call metadata reveal more than it seems? In this book, Jeffrey Pomerantz offers an accessible and concise introduction to metadata. In the era of ubiquitous computing, metadata has become infrastructural, like the electrical grid or the highway system. We interact with it or generate it every day. It is not, Pomerantz tell us, just "data about data." It is a means by which the complexity of an object is represented in a simpler form. For example, the title, the author, and the cover art are metadata about a book. When metadata does its job well, it fades i...

  4. Compost Extracts of Vegetable Wastes as Biopesticide to Control Cucumber Mosaic Virus

    Directory of Open Access Journals (Sweden)

    WIWIEK SRI WAHYUNI

    2010-06-01

    Full Text Available In semiaerobic conditions, different composting processes of vegetable wastes have different characteristics. When compost extracts amended with the effective microorganism-4 (EM4, +E and Pseudomonas aeruginosa Ch1 (+B stored for 40 days, the bacteria population and P-content increased. Tobacco plants treated with compost extracts amended with +E+B and [+E+B] directly to organic materials and inoculated with Cucumber mosaic virus (CMV both sprayed or watered applications reduced the disease severity. This is due to the higher bacteria population in the root and rhizosphere, particularly the activities of P. aeruginosa Ch1 as plant growth promoting rhizobacteria (PGPR rather than the activities of bacteria from EM4. The role of P. aeruginosa Ch1 to induce resistance of the plants to CMV was suggested by producing siderophores under the limited Fe conditions,17-20 ppm.

  5. Metadata Guidelines

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — This document provides guidelines on metadata and metadata requirements for ServCat documents. Information on metadata is followed by an instructional flowchart and...

  6. Cucumber cookbook

    CERN Document Server

    Garg, Shankar

    2015-01-01

    This book is intended for business and development personnel who want to use Cucumber for behavior-driven development and test automation. Readers with some familiarity with Cucumber will find this book of most benefit. Since the main objective of this book is to create test automation frameworks, previous experience in automation will be helpful.

  7. Acclimation to high CO/sub 2/ in monoecious cucumbers. I. Vegetative and reproductive growth. [Cucmuis sativus L

    Energy Technology Data Exchange (ETDEWEB)

    Peet, M.M.

    1986-01-01

    CO/sub 2/ concentrations of 1000 compared to 350 microliters per liter in controlled environment chambers did not increase total fruit weight or number in a monoecious cucumber (Cucumis sativus L. cv Chipper) nor did it increase biomass, leaf area, or relative growth rates beyond the first 16 days after seeding. Average fruit weight was slightly, but not significantly greater in the 1000 microliters per liter CO/sub 2/ treatment because fruit numbers were changed more than total weight. Plants grown at 1000 and 350 microliters per liter CO/sub 2/ were similar in distribution of dry matter and leaf area between mainstem, axillary, and subaxillary branches. Early flower production was greater in 1000 microliters per liter plants. Subsequent flower numbers were either lower in enriched plants or similar in the two treatments, except for the harvest at fruiting when enriched plants produced many more male flowers than the 350 microliters per liter treatments.

  8. Genetic diversity and population structure of cucumber (Cucumis sativus L.)

    Science.gov (United States)

    Understanding genetic variation in germplasm collection is essential for the conservation and their efficient use in plant breeding. Cucumber is an important vegetable crop worldwide. Previous studies revealed a low genetic diversity in cucumber, but detailed insights into the crop’s genetic structu...

  9. Moving towards shareable metadata

    OpenAIRE

    Shreeves, Sarah L.; Riley, Jenn; Milewicz, Liz

    2006-01-01

    A focus of digital libraries, particularly since the advent of the Open Archives Initiative Protocol for Metadata Harvesting, is aggregating from multiple collections metadata describing digital content. However, the quality and interoperability of the metadata often prevents such aggregations from offering much more than very simple search and discovery services. Shareable metadata is metadata which can be understood and used outside of its local environment by aggregators to provide more ad...

  10. Active Marine Station Metadata

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — The Active Marine Station Metadata is a daily metadata report for active marine bouy and C-MAN (Coastal Marine Automated Network) platforms from the National Data...

  11. Evaluation of Resistance of Cucumber Cultivars to the Vegetable Leafminer (Liriomyza sativae Blanchard (Diptera: Agromyzidae in Greenhouse Evaluación de Resistencia de Cultivares de P epino a la Mosca Minadora (Liriomyza sativae Blanchard (Diptera: Agromyzidae en Invernadero

    Directory of Open Access Journals (Sweden)

    Moslem Basij

    2011-09-01

    Full Text Available The leafminer, Liriomyza sativae Blanchard, is distributed around the world and is an important pest of vegetables and ornamentals. Given the resistance potential of the leafminer to current insecticides, the use of resistant plant cultivars and parasitoids could be effective integrated pest management (IPM strategies against it. Cucumber (Cucumis sativus L. is a preferred host for this insect. Seventeen cultivars of cucumber have been evaluated to study resistance mechanisms to L. sativae. All cucumber cultivars were evaluated in screening tests in greenhouse with indices such as the number of leafminer stings, the number of larval mines, the proportion of larval mines to leafminer stings, and the rate of injury. Significant differences (p La mosca minadora, Liriomyza sativae Blanchard, se ha distribuido por el mundo en recientes años y es una plaga importante de vegetales y plantas ornamentales. La resistencia potencial de la mosca minadora a insecticidas corrientes, el uso de cultivares resistentes, y parasitoides podrían ser estrategias efectivas en su manejo integrado de plagas (IPM. El pepino (Cucumis sativus L. es un huésped preferido por este insecto. Diecisiete cultivares de pepino fueron evaluados para estudiar los mecanismos de resistencia a L. sativae, en pruebas de screening en invernadero usando índices tales como número de marcas hechas por la mosca, número de galerías larvales, proporción entre galerías larvales y marcas hechas por la mosca, y tasa de daño. Se observaron diferencias significativas (p < 0,01 entre cultivares, así como correlaciones significativas entre los índices evaluados. Los cultivares de pepino se clasificaron por el método cluster basado en todos los caracteres medidos en cuatro grupos: susceptible, semi susceptible, semi resistente, y resistente. Los ensayos de resistencia a antibiosis de los cultivares se condujeron en cámara de crecimiento y se evaluaron con algunos índices biológicos de

  12. Metadata in CHAOS

    DEFF Research Database (Denmark)

    Lykke, Marianne; Skov, Mette; Lund, Haakon

    CHAOS (Cultural Heritage Archive Open System) provides streaming access to more than 500.000 broad-casts by the Danish Broadcast Corporation from 1931 and onwards. The archive is part of the LARM project with the purpose of enabling researchers to search, annotate, and interact with recordings....... To optimally sup-port the researchers a user-centred approach was taken to develop the platform and related metadata scheme. Based on the requirements a three level metadata scheme was developed: (1) core archival metadata, (2) LARM metadata, and (3) project-specific metadata. The paper analyses how.......fm’s strength in providing streaming access to a large, shared corpus of broadcasts....

  13. USGIN ISO metadata profile

    Science.gov (United States)

    Richard, S. M.

    2011-12-01

    The USGIN project has drafted and is using a specification for use of ISO 19115/19/39 metadata, recommendations for simple metadata content, and a proposal for a URI scheme to identify resources using resolvable http URI's(see http://lab.usgin.org/usgin-profiles). The principal target use case is a catalog in which resources can be registered and described by data providers for discovery by users. We are currently using the ESRI Geoportal (Open Source), with configuration files for the USGIN profile. The metadata offered by the catalog must provide sufficient content to guide search engines to locate requested resources, to describe the resource content, provenance, and quality so users can determine if the resource will serve for intended usage, and finally to enable human users and sofware clients to obtain or access the resource. In order to achieve an operational federated catalog system, provisions in the ISO specification must be restricted and usage clarified to reduce the heterogeneity of 'standard' metadata and service implementations such that a single client can search against different catalogs, and the metadata returned by catalogs can be parsed reliably to locate required information. Usage of the complex ISO 19139 XML schema allows for a great deal of structured metadata content, but the heterogenity in approaches to content encoding has hampered development of sophisticated client software that can take advantage of the rich metadata; the lack of such clients in turn reduces motivation for metadata producers to produce content-rich metadata. If the only significant use of the detailed, structured metadata is to format into text for people to read, then the detailed information could be put in free text elements and be just as useful. In order for complex metadata encoding and content to be useful, there must be clear and unambiguous conventions on the encoding that are utilized by the community that wishes to take advantage of advanced metadata

  14. Learning resource metadata

    Directory of Open Access Journals (Sweden)

    Silvana Temesio

    2015-10-01

    Full Text Available Metadata of educational resources are subject of analysis including LOM, OBAA and in a particular way LOM-ES Profile and accesibility VII annex. Conclusions are the importance of getting quality descriptions of resources to fulfill discovery, localization and reuse operations. The information professionals have a principal importance in the metadata registration.

  15. Visualization of JPEG Metadata

    Science.gov (United States)

    Malik Mohamad, Kamaruddin; Deris, Mustafa Mat

    There are a lot of information embedded in JPEG image than just graphics. Visualization of its metadata would benefit digital forensic investigator to view embedded data including corrupted image where no graphics can be displayed in order to assist in evidence collection for cases such as child pornography or steganography. There are already available tools such as metadata readers, editors and extraction tools but mostly focusing on visualizing attribute information of JPEG Exif. However, none have been done to visualize metadata by consolidating markers summary, header structure, Huffman table and quantization table in a single program. In this paper, metadata visualization is done by developing a program that able to summarize all existing markers, header structure, Huffman table and quantization table in JPEG. The result shows that visualization of metadata helps viewing the hidden information within JPEG more easily.

  16. Vegetation

    DEFF Research Database (Denmark)

    Epstein, H.E.; Walker, D.A.; Bhatt, U.S.;

    2012-01-01

    • Over the past 30 years (1982-2011), the Normalized Difference Vegetation Index (NDVI), an index of green vegetation, has increased 15.5% in the North American Arctic and 8.2% in the Eurasian Arctic. In the more southern regions of Arctic tundra, the estimated aboveground plant biomass has...

  17. Metadata in CHAOS

    DEFF Research Database (Denmark)

    Lykke, Marianne; Skov, Mette; Lund, Haakon

    is to provide access to broadcasts and provide tools to segment and manage concrete segments of radio broadcasts. Although the assigned metadata are project-specific, they serve as invaluable access points for fellow researchers due to their factual and neutral nature. The researchers particularly stress LARM.fm...... researchers apply the metadata scheme in their research work. The study consists of two studies, a) a qualitative study of subjects and vo-cabulary of the applied metadata and annotations, and 5 semi-structured interviews about goals for tagging. The findings clearly show that the primary role of LARM.fm...

  18. Genetic diversity and population structure of cucumber (Cucumis sativus L..

    Directory of Open Access Journals (Sweden)

    Jing Lv

    Full Text Available Knowing the extent and structure of genetic variation in germplasm collections is essential for the conservation and utilization of biodiversity in cultivated plants. Cucumber is the fourth most important vegetable crop worldwide and is a model system for other Cucurbitaceae, a family that also includes melon, watermelon, pumpkin and squash. Previous isozyme studies revealed a low genetic diversity in cucumber, but detailed insights into the crop's genetic structure and diversity are largely missing. We have fingerprinted 3,342 accessions from the Chinese, Dutch and U.S. cucumber collections with 23 highly polymorphic Simple Sequence Repeat (SSR markers evenly distributed in the genome. The data reveal three distinct populations, largely corresponding to three geographic regions. Population 1 corresponds to germplasm from China, except for the unique semi-wild landraces found in Xishuangbanna in Southwest China and East Asia; population 2 to Europe, America, and Central and West Asia; and population 3 to India and Xishuangbanna. Admixtures were also detected, reflecting hybridization and migration events between the populations. The genetic background of the Indian germplasm is heterogeneous, indicating that the Indian cucumbers maintain a large proportion of the genetic diversity and that only a small fraction was introduced to other parts of the world. Subsequently, we defined a core collection consisting of 115 accessions and capturing over 77% of the SSR alleles. Insight into the genetic structure of cucumber will help developing appropriate conservation strategies and provides a basis for population-level genome sequencing in cucumber.

  19. GSN Photo Metadata

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — GSN Photo Metadata contains photographs of Global Climate Observing System (GCOS) Surface Network (GSN) stations that have been submitted to the National Climatic...

  20. Data, Metadata - Who Cares?

    Science.gov (United States)

    Baumann, Peter

    2013-04-01

    There is a traditional saying that metadata are understandable, semantic-rich, and searchable. Data, on the other hand, are big, with no accessible semantics, and just downloadable. Not only has this led to an imbalance of search support form a user perspective, but also underneath to a deep technology divide often using relational databases for metadata and bespoke archive solutions for data. Our vision is that this barrier will be overcome, and data and metadata become searchable likewise, leveraging the potential of semantic technologies in combination with scalability technologies. Ultimately, in this vision ad-hoc processing and filtering will not distinguish any longer, forming a uniformly accessible data universe. In the European EarthServer initiative, we work towards this vision by federating database-style raster query languages with metadata search and geo broker technology. We present our approach taken, how it can leverage OGC standards, the benefits envisaged, and first results.

  1. NAIP National Metadata

    Data.gov (United States)

    Farm Service Agency, Department of Agriculture — The NAIP National Metadata Map contains USGS Quarter Quad and NAIP Seamline boundaries for every year NAIP imagery has been collected. Clicking on the map also makes...

  2. The RBV metadata catalog

    Science.gov (United States)

    Andre, Francois; Fleury, Laurence; Gaillardet, Jerome; Nord, Guillaume

    2015-04-01

    RBV (Réseau des Bassins Versants) is a French initiative to consolidate the national efforts made by more than 15 elementary observatories funded by various research institutions (CNRS, INRA, IRD, IRSTEA, Universities) that study river and drainage basins. The RBV Metadata Catalogue aims at giving an unified vision of the work produced by every observatory to both the members of the RBV network and any external person interested by this domain of research. Another goal is to share this information with other existing metadata portals. Metadata management is heterogeneous among observatories ranging from absence to mature harvestable catalogues. Here, we would like to explain the strategy used to design a state of the art catalogue facing this situation. Main features are as follows : - Multiple input methods: Metadata records in the catalog can either be entered with the graphical user interface, harvested from an existing catalogue or imported from information system through simplified web services. - Hierarchical levels: Metadata records may describe either an observatory, one of its experimental site or a single dataset produced by one instrument. - Multilingualism: Metadata can be easily entered in several configurable languages. - Compliance to standards : the backoffice part of the catalogue is based on a CSW metadata server (Geosource) which ensures ISO19115 compatibility and the ability of being harvested (globally or partially). On going tasks focus on the use of SKOS thesaurus and SensorML description of the sensors. - Ergonomy : The user interface is built with the GWT Framework to offer a rich client application with a fully ajaxified navigation. - Source code sharing : The work has led to the development of reusable components which can be used to quickly create new metadata forms in other GWT applications You can visit the catalogue (http://portailrbv.sedoo.fr/) or contact us by email rbv@sedoo.fr.

  3. Genetic diversity and population structure of cucumber (Cucumis sativus L.)

    NARCIS (Netherlands)

    Lv, J.; Qi, J.; Shi, Q.; Shen, D.; Zhang, S.; Shao, G.; Li, H.; Sun, Z.; Weng, Y.; Shang, Y.; Gu, X.; Li, X.; Zhu, X.; Zhang, J.; Treuren, van R.; Dooijeweert, van W.; Zhang, Z.; Huang, S.

    2012-01-01

    Knowing the extent and structure of genetic variation in germplasm collections is essential for the conservation and utilization of biodiversity in cultivated plants. Cucumber is the fourth most important vegetable crop worldwide and is a model system for other Cucurbitaceae, a family that also incl

  4. Syntenic relationships between cucumber (Cucumis sativus L.) and melon (C. melo L.) chromosomes as revealed by comparative genetic mapping

    Science.gov (United States)

    Cucumber and melon are two economically important vegetable species. Both species have an Asian origin that diverged approximately nine million years ago. Cucumber is believed to have evolved from melon, where twelve melon chromosomes are thought to have undergone chromosome fusion to result in the ...

  5. Cucumber vein yellowing virus

    Science.gov (United States)

    Cucurbits are an important crop of temperate, subtropical and tropical regions of the world. Cucumber vein yellowing virus (CVYV) is a major viral pathogen of cucurbits. This chapter provides an overview of the biology of CVYV and the disease it causes....

  6. Vegetation

    DEFF Research Database (Denmark)

    Epstein, H.E.; Walker, D.A.; Bhatt, U.S.

    2012-01-01

    increased 20-26%. • Increasing shrub growth and range extension throughout the Low Arctic are related to winter and early growing season temperature increases. Growth of other tundra plant types, including graminoids and forbs, is increasing, while growth of mosses and lichens is decreasing. • Increases...... in vegetation (including shrub tundra expansion) and thunderstorm activity, each a result of Arctic warming, have created conditions that favor a more active Arctic fire regime....

  7. Metadata and the Web

    Directory of Open Access Journals (Sweden)

    Mehdi Safari

    2004-12-01

    Full Text Available The rapid increase in the number and variety of resources on the World Wide Web has made the problem of resource description and discovery central to discussions about the efficiency and evolution of this medium. The inappropriateness of traditional schemas of resource description for web resources has encouraged significant activities recently on defining web-compatible schemas named "metadata". While conceptually old for library and information professionals, metadata has taken more significant and paramount role than ever before and is considered as the golden key for the next evolution of the web in the form of semantic web. This article is intended to be a brief introduction to metadata and tries to present its overview in the web.

  8. Simplified Metadata Curation via the Metadata Management Tool

    Science.gov (United States)

    Shum, D.; Pilone, D.

    2015-12-01

    The Metadata Management Tool (MMT) is the newest capability developed as part of NASA Earth Observing System Data and Information System's (EOSDIS) efforts to simplify metadata creation and improve metadata quality. The MMT was developed via an agile methodology, taking into account inputs from GCMD's science coordinators and other end-users. In its initial release, the MMT uses the Unified Metadata Model for Collections (UMM-C) to allow metadata providers to easily create and update collection records in the ISO-19115 format. Through a simplified UI experience, metadata curators can create and edit collections without full knowledge of the NASA Best Practices implementation of ISO-19115 format, while still generating compliant metadata. More experienced users are also able to access raw metadata to build more complex records as needed. In future releases, the MMT will build upon recent work done in the community to assess metadata quality and compliance with a variety of standards through application of metadata rubrics. The tool will provide users with clear guidance as to how to easily change their metadata in order to improve their quality and compliance. Through these features, the MMT allows data providers to create and maintain compliant and high quality metadata in a short amount of time.

  9. The Metadata Anonymization Toolkit

    OpenAIRE

    Voisin, Julien; Guyeux, Christophe; Bahi, Jacques M.

    2012-01-01

    This document summarizes the experience of Julien Voisin during the 2011 edition of the well-known \\emph{Google Summer of Code}. This project is a first step in the domain of metadata anonymization in Free Software. This article is articulated in three parts. First, a state of the art and a categorization of usual metadata, then the privacy policy is exposed/discussed in order to find the right balance between information lost and privacy enhancement. Finally, the specification of the Metadat...

  10. The Metadata Anonymization Toolkit

    OpenAIRE

    2012-01-01

    This document summarizes the experience of Julien Voisin during the 2011 edition of the well-known \\emph{Google Summer of Code}. This project is a first step in the domain of metadata anonymization in Free Software. This article is articulated in three parts. First, a state of the art and a categorization of usual metadata, then the privacy policy is exposed/discussed in order to find the right balance between information lost and privacy enhancement. Finally, the specification of the Metadat...

  11. Metadata for Electronic Information Resources

    Science.gov (United States)

    2004-12-01

    among digital libraries . METS provides an XML DTD that can point to metadata in other schemes by declaring the scheme that is being used. For example...site: www.niso.org/news/Metadata_simpler.pdf International Federation of Library Associations and Institutions (IFLA). (2002). Digital Libraries : Metadata

  12. A programmatic view of metadata, metadata services, and metadata flow in ATLAS

    CERN Document Server

    Malon, D; The ATLAS collaboration; Gallas, E; Stewart, G

    2012-01-01

    The volume and diversity of metadata in an experiment of the size and scope of ATLAS are considerable. Even the definition of metadata may seem context-dependent: data that are primary for one purpose may be metadata for another. Trigger information and data from the Large Hadron Collider itself provide cases in point, but examples abound. Metadata about logical or physics constructs, such as data-taking periods and runs and luminosity blocks and events and algorithms, often need to be mapped to deployment and production constructs, such as datasets and jobs and files and software versions, and vice versa. Metadata at one level of granularity may have implications at another. ATLAS metadata services must integrate and federate information from inhomogeneous sources and repositories, map metadata about logical or physics constructs to deployment and production constructs, provide a means to associate metadata at one level of granularity with processing or decision-making at another, offer a coherent and integr...

  13. A Programmatic View of Metadata, Metadata Services, and Metadata Flow in ATLAS

    CERN Document Server

    CERN. Geneva

    2012-01-01

    The volume and diversity of metadata in an experiment of the size and scope of ATLAS is considerable. Even the definition of metadata may seem context-dependent: data that are primary for one purpose may be metadata for another. Trigger information and data from the Large Hadron Collider itself provide cases in point, but examples abound. Metadata about logical or physics constructs, such as data-taking periods and runs and luminosity blocks and events and algorithms, often need to be mapped to deployment and production constructs, such as datasets and jobs and files and software versions, and vice versa. Metadata at one level of granularity may have implications at another. ATLAS metadata services must integrate and federate information from inhomogeneous sources and repositories, map metadata about logical or physics constructs to deployment and production constructs, provide a means to associate metadata at one level of granularity with processing or decision-making at another, offer a coherent and ...

  14. A Programmatic View of Metadata, Metadata Services, and Metadata Flow in ATLAS

    CERN Document Server

    Malon, D; The ATLAS collaboration; Gallas, E; Stewart, G

    2012-01-01

    The volume and diversity of metadata in an experiment of the size and scope of ATLAS are considerable. Even the definition of metadata may seem context-dependent: data that are primary for one purpose may be metadata for another. Trigger information and data from the Large Hadron Collider itself provide cases in point, but examples abound. Metadata about logical or physics constructs, such as data-taking periods and runs and luminosity blocks and events and algorithms, often need to be mapped to deployment and production constructs, such as datasets and jobs and files and software versions, and vice versa. Metadata at one level of granularity may have implications at another. ATLAS metadata services must integrate and federate information from inhomogeneous sources and repositories, map metadata about logical or physics constructs to deployment and production constructs, provide a means to associate metadata at one level of granularity with processing or decision-making at another, offer a coherent and integr...

  15. Influence of Fertilization System on the Quality of Cucumbers

    Directory of Open Access Journals (Sweden)

    Gheorghe CÎMPEANU

    2013-05-01

    Full Text Available Different types of cucumbers culture, respectively organic system and the system of chemical and organic fertilization can influence vegetable quality. The present study was carried out in a solarium on a farm, in six experimental variants, three replications. Three variants for fertilization systems with two cucumbers cultivars were used. The biological material used in the experiments consisted of the cultivars ‘Triumf’ F1 and ‘Mirabelle’ F1. Fertilization systems used were organic with manure, classic with chemical fertilizers and soluble complex fertilizers with fertigation. In the present research agrochemical and biochemical characteristics were analysed and also weight of fruits and yield on plants and kg/m2 were measured. Agrochemical characteristics were: contents of nitrates, phosphorus and potassium from cucumbers and the biochemical characteristics measured were: acidity, soluble carbohydrates, vitamin C and dry matter. The results showed that the fertilization with soluble complex fertilizers in addition with fertigation assured the entire necessary for the growth and fructification of cucumbers. The presence of chemical fertilizers do not influence in a negative way the nitrates, phosphorus and potassium content and the quality of consumption of cucumbers was assured. Regarding the cultivars the best yield and quality results were obtained to ‘Mirabelle’ F1.

  16. Phosphorus, Potassium and Nitrate Contents in Fruit of Pickling Cucumbers Grown in a High Tunnel

    OpenAIRE

    2016-01-01

    Pickling cucumbers are highly important both for fresh consumption and for canning industry. This study aimed to compare differences in yield and quality of eight pickling cucumber cultivars, including ‘Cor 12004’, ‘IGG 2010’, ‘IGG 2020’, ‘SM 5322’, ‘SM 5323’, ‘Zayin 201’, ‘Zayin 175201’ and ‘Trilogy’. The cucumber cultivars were laid out in a high tunnel crop and evaluated for vegetative traits (i.e. vine length, nodes per vine and branches per vine), yield attributes (i.e. fruits per main s...

  17. Spatial Vegetation Data for Badlands National Park Vegetation Mapping Project

    Data.gov (United States)

    National Park Service, Department of the Interior — This metadata is for all coverages associated with the vegetation land cover and land use geospatial database for Badlands National Park and surrounding areas. The...

  18. Spatial Vegetation Data for Wupatki National Monument Vegetation Mapping Project

    Data.gov (United States)

    National Park Service, Department of the Interior — This metadata is for the vegetation and land-use geo-spatial database for Wupatki National Monument and surrounding areas. The project is authorized as part of the...

  19. Spatial Vegetation Data for Zion National Park Vegetation Mapping Project

    Data.gov (United States)

    National Park Service, Department of the Interior — This metadata is for the vegetation and land-use geo-spatial database for Zion National Park and surrounding areas. The project is authorized as part of the USGS/NPS...

  20. Phosphorus, Potassium and Nitrate Contents in Fruit of Pickling Cucumbers Grown in a High Tunnel

    Directory of Open Access Journals (Sweden)

    Gabriela NEAȚĂ

    2016-12-01

    Full Text Available Pickling cucumbers are highly important both for fresh consumption and for canning industry. This study aimed to compare differences in yield and quality of eight pickling cucumber cultivars, including ‘Cor 12004’, ‘IGG 2010’, ‘IGG 2020’, ‘SM 5322’, ‘SM 5323’, ‘Zayin 201’, ‘Zayin 175201’ and ‘Trilogy’. The cucumber cultivars were laid out in a high tunnel crop and evaluated for vegetative traits (i.e. vine length, nodes per vine and branches per vine, yield attributes (i.e. fruits per main stem, average weight of fruit and fruits weight per plant and fruits quality components (nitrate, phosphate and potassium mg kg-1. The results showed significant differences (P12 cm, revealed a declining value with increase in the cucumber length. The study findings suggest that irrespective of the cultivar, the amount of nitrate was higher in shorter cucumbers (6-9 cm length although all recorded values (between 192.7 and 364.3 mg kg-1 fresh matter being under maximum accepted limit concentrations. The amount of phosphate was higher in medium to long cucumbers, while the amount of potassium was higher in shorter cucumbers.

  1. Ultraviolet-C Light Sanitization of English Cucumber (Cucumis sativus) Packaged in Polyethylene Film.

    Science.gov (United States)

    Tarek, Abdussamad R; Rasco, Barbara A; Sablani, Shyam S

    2016-06-01

    Food safety is becoming an increasing concern in the United States. This study investigated the effects of ultraviolet-C (UV-C) light as a postpackaging bactericidal treatment on the quality of English cucumber packaged in polyethylene (PE) film. Escherichia coli k-12 was used as a surrogate microbe. The microbial growth and physical properties of packaged cucumbers were analyzed during a 28-d storage period at 5 °C. Inoculating packaged cucumbers treated at 23 °C for 6 min with UV-C (560 mJ/cm(2) ) resulted in a 1.60 log CFU/g reduction. However, this treatment had no significant effect (P > 0.05) on the water vapor transmission rate or oxygen transmission rate of the PE film. Results show that UV-C light treatment delayed the loss of firmness and yellowing of English cucumber up to 28 d at 5 °C. In addition, UV-C light treatment extended the shelf life of treated cucumber 1 wk longer compared to untreated cucumbers. Electron microscopy images indicate that UV-C light treatment influences the morphology of the E. coli k-12 cells. Findings demonstrate that treating cucumbers with UV-C light following packaging in PE film can reduce bacterial populations significantly and delay quality loss. This technology may also be effective for other similarly packaged fresh fruits and vegetables.

  2. Cytometry metadata in XML

    Science.gov (United States)

    Leif, Robert C.; Leif, Stephanie H.

    2016-04-01

    Introduction: The International Society for Advancement of Cytometry (ISAC) has created a standard for the Minimum Information about a Flow Cytometry Experiment (MIFlowCyt 1.0). CytometryML will serve as a common metadata standard for flow and image cytometry (digital microscopy). Methods: The MIFlowCyt data-types were created, as is the rest of CytometryML, in the XML Schema Definition Language (XSD1.1). The datatypes are primarily based on the Flow Cytometry and the Digital Imaging and Communication (DICOM) standards. A small section of the code was formatted with standard HTML formatting elements (p, h1, h2, etc.). Results:1) The part of MIFlowCyt that describes the Experimental Overview including the specimen and substantial parts of several other major elements has been implemented as CytometryML XML schemas (www.cytometryml.org). 2) The feasibility of using MIFlowCyt to provide the combination of an overview, table of contents, and/or an index of a scientific paper or a report has been demonstrated. Previously, a sample electronic publication, EPUB, was created that could contain both MIFlowCyt metadata as well as the binary data. Conclusions: The use of CytometryML technology together with XHTML5 and CSS permits the metadata to be directly formatted and together with the binary data to be stored in an EPUB container. This will facilitate: formatting, data- mining, presentation, data verification, and inclusion in structured research, clinical, and regulatory documents, as well as demonstrate a publication's adherence to the MIFlowCyt standard, promote interoperability and should also result in the textual and numeric data being published using web technology without any change in composition.

  3. Federating Metadata Catalogs

    Science.gov (United States)

    Baru, C.; Lin, K.

    2009-04-01

    The Geosciences Network project (www.geongrid.org) has been developing cyberinfrastructure for data sharing in the Earth Science community based on a service-oriented architecture. The project defines a standard "software stack", which includes a standardized set of software modules and corresponding service interfaces. The system employs Grid certificates for distributed user authentication. The GEON Portal provides online access to these services via a set of portlets. This service-oriented approach has enabled the GEON network to easily expand to new sites and deploy the same infrastructure in new projects. To facilitate interoperation with other distributed geoinformatics environments, service standards are being defined and implemented for catalog services and federated search across distributed catalogs. The need arises because there may be multiple metadata catalogs in a distributed system, for example, for each institution, agency, geographic region, and/or country. Ideally, a geoinformatics user should be able to search across all such catalogs by making a single search request. In this paper, we describe our implementation for such a search capability across federated metadata catalogs in the GEON service-oriented architecture. The GEON catalog can be searched using spatial, temporal, and other metadata-based search criteria. The search can be invoked as a Web service and, thus, can be imbedded in any software application. The need for federated catalogs in GEON arises because, (i) GEON collaborators at the University of Hyderabad, India have deployed their own catalog, as part of the iGEON-India effort, to register information about local resources for broader access across the network, (ii) GEON collaborators in the GEO Grid (Global Earth Observations Grid) project at AIST, Japan have implemented a catalog for their ASTER data products, and (iii) we have recently deployed a search service to access all data products from the EarthScope project in the US

  4. Indoleacetaldehyde in Cucumber Seedlings 1

    Science.gov (United States)

    Purves, William K.; Brown, Hugh M.

    1978-01-01

    The presence of indoleacetaldehyde in cucumber (Cucumis sativus L.) cotyledons was demonstrated by thin layer chromatographic RF values in three solvent systems, by the formation and hydrolysis of a bisulfite adduct, and by chemical reduction to indoleethanol and oxidation to indoleacetic acid. Bioassays indicated a minimum indoleacetaldehyde content in etiolated cotyledons of 0.7 μg per kg fresh weight. Tissue samples from all parts of both green and etiolated cucumber seedlings reduced exogenously supplied indoleacetaldehyde to indoleethanol. PMID:16660219

  5. Applied Parallel Metadata Indexing

    Energy Technology Data Exchange (ETDEWEB)

    Jacobi, Michael R [Los Alamos National Laboratory

    2012-08-01

    The GPFS Archive is parallel archive is a parallel archive used by hundreds of users in the Turquoise collaboration network. It houses 4+ petabytes of data in more than 170 million files. Currently, users must navigate the file system to retrieve their data, requiring them to remember file paths and names. A better solution might allow users to tag data with meaningful labels and searach the archive using standard and user-defined metadata, while maintaining security. last summer, I developed the backend to a tool that adheres to these design goals. The backend works by importing GPFS metadata into a MongoDB cluster, which is then indexed on each attribute. This summer, the author implemented security and developed the user interfae for the search tool. To meet security requirements, each database table is associated with a single user, which only stores records that the user may read, and requires a set of credentials to access. The interface to the search tool is implemented using FUSE (Filesystem in USErspace). FUSE is an intermediate layer that intercepts file system calls and allows the developer to redefine how those calls behave. In the case of this tool, FUSE interfaces with MongoDB to issue queries and populate output. A FUSE implementation is desirable because it allows users to interact with the search tool using commands they are already familiar with. These security and interface additions are essential for a usable product.

  6. Creating preservation metadata from XML-metadata profiles

    Science.gov (United States)

    Ulbricht, Damian; Bertelmann, Roland; Gebauer, Petra; Hasler, Tim; Klump, Jens; Kirchner, Ingo; Peters-Kottig, Wolfgang; Mettig, Nora; Rusch, Beate

    2014-05-01

    Registration of dataset DOIs at DataCite makes research data citable and comes with the obligation to keep data accessible in the future. In addition, many universities and research institutions measure data that is unique and not repeatable like the data produced by an observational network and they want to keep these data for future generations. In consequence, such data should be ingested in preservation systems, that automatically care for file format changes. Open source preservation software that is developed along the definitions of the ISO OAIS reference model is available but during ingest of data and metadata there are still problems to be solved. File format validation is difficult, because format validators are not only remarkably slow - due to variety in file formats different validators return conflicting identification profiles for identical data. These conflicts are hard to resolve. Preservation systems have a deficit in the support of custom metadata. Furthermore, data producers are sometimes not aware that quality metadata is a key issue for the re-use of data. In the project EWIG an university institute and a research institute work together with Zuse-Institute Berlin, that is acting as an infrastructure facility, to generate exemplary workflows for research data into OAIS compliant archives with emphasis on the geosciences. The Institute for Meteorology provides timeseries data from an urban monitoring network whereas GFZ Potsdam delivers file based data from research projects. To identify problems in existing preservation workflows the technical work is complemented by interviews with data practitioners. Policies for handling data and metadata are developed. Furthermore, university teaching material is created to raise the future scientists awareness of research data management. As a testbed for ingest workflows the digital preservation system Archivematica [1] is used. During the ingest process metadata is generated that is compliant to the

  7. Medieval herbal iconography and lexicography of Cucumis (cucumber and melon, Cucurbitaceae) in the Occident, 1300–1458

    Science.gov (United States)

    Paris, Harry S.; Janick, Jules; Daunay, Marie-Christine

    2011-01-01

    Background The genus Cucumis contains two species of important vegetable crops, C. sativus, cucumber, and C. melo, melon. Melon has iconographical and textual records from lands of the Mediterranean Basin dating back to antiquity, but cucumber does not. The goal of this study was to obtain an improved understanding of the history of these crops in the Occident. Medieval images purportedly of Cucumis were examined, their specific identity was determined and they were compared for originality, accuracy and the lexicography of their captions. Findings The manuscripts having accurate, informative images are derived from Italy and France and were produced between 1300 and 1458. All have an illustration of cucumber but not all contain an image of melon. The cucumber fruits are green, unevenly cylindrical with an approx. 2:1 length-to-width ratio. Most of the images show the cucumbers marked by sparsely distributed, large dark dots, but images from northern France show them as having densely distributed, small black dots. The different size, colour and distribution reflect the different surface wartiness and spininess of modern American and French pickling cucumbers. The melon fruits are green, oval to serpentine, closely resembling the chate and snake vegetable melons, but not sweet melons. In nearly all manuscripts of Italian provenance, the cucumber image is labelled with the Latin caption citruli, or similar, plural diminuitive of citrus (citron, Citrus medica). However, in manuscripts of French provenance, the cucumber image is labelled cucumeres, which is derived from the classical Latin epithet cucumis for snake melon. The absence of melon in some manuscripts and the expropriation of the Latin cucumis/cucumer indicate replacement of vegetable melons by cucumbers during the medieval period in Europe. One image, from British Library ms. Sloane 4016, has a caption that allows tracing of the word ‘gherkin’ back to languages of the geographical nativity of C

  8. Mercury Toolset for Spatiotemporal Metadata

    Science.gov (United States)

    Wilson, Bruce E.; Palanisamy, Giri; Devarakonda, Ranjeet; Rhyne, B. Timothy; Lindsley, Chris; Green, James

    2010-01-01

    Mercury (http://mercury.ornl.gov) is a set of tools for federated harvesting, searching, and retrieving metadata, particularly spatiotemporal metadata. Version 3.0 of the Mercury toolset provides orders of magnitude improvements in search speed, support for additional metadata formats, integration with Google Maps for spatial queries, facetted type search, support for RSS (Really Simple Syndication) delivery of search results, and enhanced customization to meet the needs of the multiple projects that use Mercury. It provides a single portal to very quickly search for data and information contained in disparate data management systems, each of which may use different metadata formats. Mercury harvests metadata and key data from contributing project servers distributed around the world and builds a centralized index. The search interfaces then allow the users to perform a variety of fielded, spatial, and temporal searches across these metadata sources. This centralized repository of metadata with distributed data sources provides extremely fast search results to the user, while allowing data providers to advertise the availability of their data and maintain complete control and ownership of that data. Mercury periodically (typically daily) harvests metadata sources through a collection of interfaces and re-indexes these metadata to provide extremely rapid search capabilities, even over collections with tens of millions of metadata records. A number of both graphical and application interfaces have been constructed within Mercury, to enable both human users and other computer programs to perform queries. Mercury was also designed to support multiple different projects, so that the particular fields that can be queried and used with search filters are easy to configure for each different project.

  9. Mercury Toolset for Spatiotemporal Metadata

    Science.gov (United States)

    Devarakonda, Ranjeet; Palanisamy, Giri; Green, James; Wilson, Bruce; Rhyne, B. Timothy; Lindsley, Chris

    2010-06-01

    Mercury (http://mercury.ornl.gov) is a set of tools for federated harvesting, searching, and retrieving metadata, particularly spatiotemporal metadata. Version 3.0 of the Mercury toolset provides orders of magnitude improvements in search speed, support for additional metadata formats, integration with Google Maps for spatial queries, facetted type search, support for RSS (Really Simple Syndication) delivery of search results, and enhanced customization to meet the needs of the multiple projects that use Mercury. It provides a single portal to very quickly search for data and information contained in disparate data management systems, each of which may use different metadata formats. Mercury harvests metadata and key data from contributing project servers distributed around the world and builds a centralized index. The search interfaces then allow the users to perform a variety of fielded, spatial, and temporal searches across these metadata sources. This centralized repository of metadata with distributed data sources provides extremely fast search results to the user, while allowing data providers to advertise the availability of their data and maintain complete control and ownership of that data. Mercury periodically (typically daily)harvests metadata sources through a collection of interfaces and re-indexes these metadata to provide extremely rapid search capabilities, even over collections with tens of millions of metadata records. A number of both graphical and application interfaces have been constructed within Mercury, to enable both human users and other computer programs to perform queries. Mercury was also designed to support multiple different projects, so that the particular fields that can be queried and used with search filters are easy to configure for each different project.

  10. ATLAS Metadata Interface (AMI), a generic metadata framework

    CERN Document Server

    Fulachier, Jerome; The ATLAS collaboration

    2017-01-01

    The ATLAS Metadata Interface (AMI) is a mature application of more than 15 years of existence. Mainly used by the ATLAS experiment at CERN, it consists of a very generic tool ecosystem for metadata aggregation and cataloguing. We briefly describe the architecture, the main services and the benefits of using AMI in big collaborations, especially for high energy physics. We focus on the recent improvements, for instance: the lightweight clients (Python, JavaScript, C++), the new smart task server system and the Web 2.0 AMI framework for simplifying the development of metadata-oriented web interfaces.

  11. ATLAS Metadata Interface (AMI), a generic metadata framework

    CERN Document Server

    Fulachier, Jerome; The ATLAS collaboration

    2016-01-01

    The ATLAS Metadata Interface (AMI) is a mature application of more than 15 years of existence. Mainly used by the ATLAS experiment at CERN, it consists of a very generic tool ecosystem for metadata aggregation and cataloguing. We briefly describe the architecture, the main services and the benefits of using AMI in big collaborations, especially for high energy physics. We focus on the recent improvements, for instance: the lightweight clients (Python, Javascript, C++), the new smart task server system and the Web 2.0 AMI framework for simplifying the development of metadata-oriented web interfaces.

  12. AGROBOTANICAL ILLUSTRATION OF TURBAN FORMS OF CUCUMBER, AS A SOURCE OF INFORMATION OF DISTRIBUTION, EVOLUTION AND USE OF THIS CULTURE

    Directory of Open Access Journals (Sweden)

    Tsatsenko L. V.

    2014-09-01

    Full Text Available The article considers turban cucumber forms, we have also described the origin of this characteristic, briefly overviewed turban forms in species of the family of Cucurbitaceae. We have given the agro-botanical iconography of this trait in pumpkin cultures for cucumis. In Europe, China and America turbanoformis cucumber forms are used as a vegetable, there are some varieties. It is shown that turbanoformis forms are found in the fruit of the cucumber with hermaphrodite flower, polunina ovaries, short or shareplace the melon, and also in forms with the ongoing evolutionary process

  13. Assessing Field Spectroscopy Metadata Quality

    Directory of Open Access Journals (Sweden)

    Barbara A. Rasaiah

    2015-04-01

    Full Text Available This paper presents the proposed criteria for measuring the quality and completeness of field spectroscopy metadata in a spectral archive. Definitions for metadata quality and completeness for field spectroscopy datasets are introduced. Unique methods for measuring quality and completeness of metadata to meet the requirements of field spectroscopy datasets are presented. Field spectroscopy metadata quality can be defined in terms of (but is not limited to logical consistency, lineage, semantic and syntactic error rates, compliance with a quality standard, quality assurance by a recognized authority, and reputational authority of the data owners/data creators. Two spectral libraries are examined as case studies of operationalized metadata policies, and the degree to which they are aligned with the needs of field spectroscopy scientists. The case studies reveal that the metadata in publicly available spectral datasets are underperforming on the quality and completeness measures. This paper is part two in a series examining the issues central to a metadata standard for field spectroscopy datasets.

  14. Developing the CUAHSI Metadata Profile

    Science.gov (United States)

    Piasecki, M.; Bermudez, L.; Islam, S.; Beran, B.

    2004-12-01

    The Hydrologic Information System (HIS), of the Consortium of Universities for the Advancement of Hydrologic Science Inc., (CUAHSI), has as one of its goals to improve access to large volume, high quality, and heterogeneous hydrologic data sets. This will be attained in part by adopting a community metadata profile to achieve consistent descriptions that will facilitate data discovery. However, common standards are quite general in nature and typically lack domain specific vocabularies, complicating the adoption of standards for specific communities. We will show and demonstrate the problems encountered in the process of adopting ISO standards to create a CUAHSI metadata profile. The final schema is expressed in a simple metadata format, Metadata Template File (MTF), to leverage metadata annotations/viewer tools already developed by the San Diego Super Computer Center. The steps performed to create an MTF starting from ISO 19115:2003 are the following: 1) creation of ontologies using the Web Ontology Language (OWL) for ISO:19115 2003 and related ISO/TC 211 documents; 2) conceptualization in OWL of related hydrologic vocabularies such as NASA's Global Change Master Directory and units from the Hydrologic Handbook; 3) definition of CUAHSI profile by importing and extending the previous ontologies; 4) explicit creation of CUAHSI core set 5) export of the core set to MTF); 6) definition of metadata blocks for arbitrary digital objects (e.g. time series vs static-spatial data) using ISO's methodology for feature cataloguing; and 7) export of metadata blocks to MTF.

  15. Metadata Dictionary Database: A Proposed Tool for Academic Library Metadata Management

    Science.gov (United States)

    Southwick, Silvia B.; Lampert, Cory

    2011-01-01

    This article proposes a metadata dictionary (MDD) be used as a tool for metadata management. The MDD is a repository of critical data necessary for managing metadata to create "shareable" digital collections. An operational definition of metadata management is provided. The authors explore activities involved in metadata management in…

  16. The metadata manual a practical workbook

    CERN Document Server

    Lubas, Rebecca; Schneider, Ingrid

    2013-01-01

    Cultural heritage professionals have high levels of training in metadata. However, the institutions in which they practice often depend on support staff, volunteers, and students in order to function. With limited time and funding for training in metadata creation for digital collections, there are often many questions about metadata without a reliable, direct source for answers. The Metadata Manual provides such a resource, answering basic metadata questions that may appear, and exploring metadata from a beginner's perspective. This title covers metadata basics, XML basics, Dublin Core, VRA C

  17. Automatic Metadata Generation using Associative Networks

    CERN Document Server

    Rodriguez, Marko A; Van de Sompel, Herbert

    2008-01-01

    In spite of its tremendous value, metadata is generally sparse and incomplete, thereby hampering the effectiveness of digital information services. Many of the existing mechanisms for the automated creation of metadata rely primarily on content analysis which can be costly and inefficient. The automatic metadata generation system proposed in this article leverages resource relationships generated from existing metadata as a medium for propagation from metadata-rich to metadata-poor resources. Because of its independence from content analysis, it can be applied to a wide variety of resource media types and is shown to be computationally inexpensive. The proposed method operates through two distinct phases. Occurrence and co-occurrence algorithms first generate an associative network of repository resources leveraging existing repository metadata. Second, using the associative network as a substrate, metadata associated with metadata-rich resources is propagated to metadata-poor resources by means of a discrete...

  18. Identification of differentially expressed genes related to aphid resistance in cucumber (Cucumis sativus L.).

    Science.gov (United States)

    Liang, Danna; Liu, Min; Hu, Qijing; He, Min; Qi, Xiaohua; Xu, Qiang; Zhou, Fucai; Chen, Xuehao

    2015-05-11

    Cucumber, a very important vegetable crop worldwide, is easily damaged by pests. Aphids (Aphis gossypii Glover) are among the most serious pests in cucumber production and often cause severe loss of yield and make fruit quality get worse. Identifying genes that render cucumbers resistant to aphid-induced damage and breeding aphid-resistant cucumber varieties have become the most promising control strategies. In this study, a Illumina Genome Analyzer platform was applied to monitor changes in gene expression in the whole genome of the cucumber cultivar 'EP6392' which is resistant to aphids. Nine DGE libraries were constructed from infected and uninfected leaves. In total, 49 differentially expressed genes related to cucumber aphid resistance were screened during the treatment period. These genes are mainly associated with signal transduction, plant-pathogen interactions, flavonoid biosynthesis, amino acid metabolism and sugar metabolism pathways. Eight of the 49 genes may be associated with aphid resistance. Finally, expression of 9 randomly selected genes was evaluated by qRT-PCR to verify the results for the tag-mapped genes. With the exception of 1-aminocyclopropane-1-carboxylate oxidase homolog 6, the expression of the chosen genes was in agreement with the results of the tag-sequencing analysis patterns.

  19. Residues and Analysis of Degradation of Novel Fungicide Picoxystrobin in Cucumber and Soil Under Field Conditions

    Directory of Open Access Journals (Sweden)

    SUN Yang

    2014-10-01

    Full Text Available The analytical method for the residues of picoxystrobin in cucumber vegetable and soil matrices was developed and the dissipation of picoxystrobin under field conditions was studied. The limit of detection(LODof picoxystrobin was 3.5×10 -11 g and the limit of quantifica-tion(LOQwas found to be 0.005 mg·kg -1 in cucumber and soil. At three different spiking levels(0.005, 0.05, 0.25 mg·kg -1, mean recoveries and relative standard deviation(RSDfrom fortified samples in five replicated experiments for each matrix were in the range of 68.61%-122.4% and 1.06%-17.2%, respectively. The results showed that the half-lives of picoxystrobin in cucumber and soil from Tianjin City were 5.71 d and 12.9 d, respectively, the half-lives of picoxystrobin in cucumber and soil from Shandong Province were 2.70 d and 10.3 d, respec-tively, and the half-lives of picoxystrobin in cucumber and soil from Jiangsu Province were 9.76 d and 14.9 d, respectively. The maximum residual concentration of picoxystrobin on the 5th day after the last application was 0.014 mg· kg -1, much lower than the Maximum Residue Limits(MRLsfor picoxystrobin in cucumber according to the standards of EU(0.05 mg·kg-1.

  20. Evaluating the privacy properties of telephone metadata

    OpenAIRE

    2016-01-01

    Privacy protections against government surveillance are often scoped to communications content and exclude communications metadata. In the United States, the National Security Agency operated a particularly controversial program, collecting bulk telephone metadata nationwide. We investigate the privacy properties of telephone metadata to assess the impact of policies that distinguish between content and metadata. We find that telephone metadata is densely interconnected, can trivially be reid...

  1. FSA 2002 Digital Orthophoto Metadata

    Data.gov (United States)

    Minnesota Department of Natural Resources — Metadata for the 2002 FSA Color Orthophotos Layer. Each orthophoto is represented by a Quarter 24k Quad tile polygon. The polygon attributes contain the quarter-quad...

  2. phosphorus retention data and metadata

    Data.gov (United States)

    U.S. Environmental Protection Agency — phosphorus retention in wetlands data and metadata. This dataset is associated with the following publication: Lane , C., and B. Autrey. Phosphorus retention of...

  3. Towards Exascale Scientific Metadata Management

    OpenAIRE

    Blanas, Spyros; Byna, Surendra

    2015-01-01

    Advances in technology and computing hardware are enabling scientists from all areas of science to produce massive amounts of data using large-scale simulations or observational facilities. In this era of data deluge, effective coordination between the data production and the analysis phases hinges on the availability of metadata that describe the scientific datasets. Existing workflow engines have been capturing a limited form of metadata to provide provenance information about the identity ...

  4. Vegetation (MCV / NVCS) Mapping Projects - California [ds515

    Data.gov (United States)

    California Department of Resources — This metadata layer shows the footprint of vegetation mapping projects completed in California that have used the Manual California of Vegetation ( MCV 1st edition)...

  5. Metadata based mediator generation

    Energy Technology Data Exchange (ETDEWEB)

    Critchlow, T

    1998-03-01

    Mediators are a critical component of any data warehouse, particularly one utilizing partially materialized views; they transform data from its source format to the warehouse representation while resolving semantic and syntactic conflicts. The close relationship between mediators and databases, requires a mediator to be updated whenever an associated schema is modified. This maintenance may be a significant undertaking if a warehouse integrates several dynamic data sources. However, failure to quickly perform these updates significantly reduces the reliability of the warehouse because queries do not have access to the m current data. This may result in incorrect or misleading responses, and reduce user confidence in the warehouse. This paper describes a metadata framework, and associated software designed to automate a significant portion of the mediator generation task and thereby reduce the effort involved in adapting the schema changes. By allowing the DBA to concentrate on identifying the modifications at a high level, instead of reprogramming the mediator, turnaround time is reduced and warehouse reliability is improved.

  6. U.S. Fresh and Pickling Cucumber Markets

    OpenAIRE

    2013-01-01

    As part of an effort to estimate the potential impact of downy mildew to U.S. growers of cucumbers, this report reviews historical trends in production and markets for cucumbers including slicing and pickling cucumbers.

  7. Didymella bryoniae on glasshouse cucumbers

    NARCIS (Netherlands)

    Steekelenburg, van N.A.M.

    1986-01-01

    The increasing incidence of fruit rot, caused by Didymella bryoniae , in glasshouse cucumbers in the Netherlands gave rise to a study of the biology of the pathogen, the epidemiology of the disease, and control methods. Stems, leaves and growing tips may be attacked, and fruits ma

  8. Cucumber mosaic virus in Rubus

    Science.gov (United States)

    Cucumber mosaic virus (CMV) has been reported on red raspberry in Chile, Scotland and the Soviet Union and in Chile on blackberry. Its occurrence in Rubus is rare and seems to cause little damage. Except for one early, unconfirmed report, CMV has not been reported on Rubus in North America. This vir...

  9. Chicken Porridge with Sea Cucumber

    Institute of Scientific and Technical Information of China (English)

    1994-01-01

    Main ingredients: 50 grams of chicken breast, 200 grams of gray sea cucumbers Supplementary ingredients: 100 grams of water chestnut, the whites of four eggs, MSG, salt, wine, meat soup, starch, sugar, scallions, ginger, soy sauce Directions: Chop up the chicken breast and water chestnut into small

  10. Didymella bryoniae on glasshouse cucumbers

    NARCIS (Netherlands)

    Steekelenburg, van N.A.M.

    1986-01-01

    The increasing incidence of fruit rot, caused by Didymella bryoniae , in glasshouse cucumbers in the Netherlands gave rise to a study of the biology of the pathogen, the epidemiology of the disease, and control methods. Stems, leaves and growing tips may be attacked, and fruits

  11. On the Origin of Metadata

    Directory of Open Access Journals (Sweden)

    Sam Coppens

    2012-12-01

    Full Text Available Metadata has been around and has evolved for centuries, albeit not recognized as such. Medieval manuscripts typically had illuminations at the start of each chapter, being both a kind of signature for the author writing the script and a pictorial chapter anchor for the illiterates at the time. Nowadays, there is so much fragmented information on the Internet that users sometimes fail to distinguish the real facts from some bended truth, let alone being able to interconnect different facts. Here, the metadata can both act as noise-reductors for detailed recommendations to the end-users, as it can be the catalyst to interconnect related information. Over time, metadata thus not only has had different modes of information, but furthermore, metadata’s relation of information to meaning, i.e., “semantics”, evolved. Darwin’s evolutionary propositions, from “species have an unlimited reproductive capacity”, over “natural selection”, to “the cooperation of mutations leads to adaptation to the environment” show remarkable parallels to both metadata’s different modes of information and to its relation of information to meaning over time. In this paper, we will show that the evolution of the use of (metadata can be mapped to Darwin’s nine evolutionary propositions. As mankind and its behavior are products of an evolutionary process, the evolutionary process of metadata with its different modes of information is on the verge of a new-semantic-era.

  12. Metadata-Centric Discovery Service

    Science.gov (United States)

    Huang, T.; Chung, N. T.; Gangl, M. E.; Armstrong, E. M.

    2011-12-01

    It is data about data. It is the information describing a picture without looking at the picture. Through the years, the Earth Science community seeks better methods to describe science artifacts to improve the quality and efficiency in information exchange. One the purposes are to provide information to the users to guide them into identifies the science artifacts of their interest. The NASA Distributed Active Archive Centers (DAACs) are the building blocks of a data centric federation, designed for processing and archiving from NASA's Earth Observation missions and their distribution as well as provision of specialized services to users. The Physical Oceanography Distributed Active Archive Center (PO.DAAC), at the Jet Propulsion Laboratory, archives and distributes science artifacts pertain to the physical state of the ocean. As part of its high-performance operational Data Management and Archive System (DMAS) is a fast data discovery RESTful web service called the Oceanographic Common Search Interface (OCSI). The web service searches and delivers metadata on all data holdings within PO.DAAC. Currently OCSI supports metadata standards such as ISO-19115, OpenSearch, GCMD, and FGDC, with new metadata standards still being added. While we continue to seek the silver bullet in metadata standard, the Earth Science community is in fact consists of various standards due to the specific needs of its users and systems. This presentation focuses on the architecture behind OCSI as a reference implementation on building a metadata-centric discovery service.

  13. THE NEW ONLINE METADATA EDITOR FOR GENERATING STRUCTURED METADATA

    Energy Technology Data Exchange (ETDEWEB)

    Devarakonda, Ranjeet [ORNL; Shrestha, Biva [ORNL; Palanisamy, Giri [ORNL; Hook, Leslie A [ORNL; Killeffer, Terri S [ORNL; Boden, Thomas A [ORNL; Cook, Robert B [ORNL; Zolly, Lisa [United States Geological Service (USGS); Hutchison, Viv [United States Geological Service (USGS); Frame, Mike [United States Geological Service (USGS); Cialella, Alice [Brookhaven National Laboratory (BNL); Lazer, Kathy [Brookhaven National Laboratory (BNL)

    2014-01-01

    Nobody is better suited to describe data than the scientist who created it. This description about a data is called Metadata. In general terms, Metadata represents the who, what, when, where, why and how of the dataset [1]. eXtensible Markup Language (XML) is the preferred output format for metadata, as it makes it portable and, more importantly, suitable for system discoverability. The newly developed ORNL Metadata Editor (OME) is a Web-based tool that allows users to create and maintain XML files containing key information, or metadata, about the research. Metadata include information about the specific projects, parameters, time periods, and locations associated with the data. Such information helps put the research findings in context. In addition, the metadata produced using OME will allow other researchers to find these data via Metadata clearinghouses like Mercury [2][4]. OME is part of ORNL s Mercury software fleet [2][3]. It was jointly developed to support projects funded by the United States Geological Survey (USGS), U.S. Department of Energy (DOE), National Aeronautics and Space Administration (NASA) and National Oceanic and Atmospheric Administration (NOAA). OME s architecture provides a customizable interface to support project-specific requirements. Using this new architecture, the ORNL team developed OME instances for USGS s Core Science Analytics, Synthesis, and Libraries (CSAS&L), DOE s Next Generation Ecosystem Experiments (NGEE) and Atmospheric Radiation Measurement (ARM) Program, and the international Surface Ocean Carbon Dioxide ATlas (SOCAT). Researchers simply use the ORNL Metadata Editor to enter relevant metadata into a Web-based form. From the information on the form, the Metadata Editor can create an XML file on the server that the editor is installed or to the user s personal computer. Researchers can also use the ORNL Metadata Editor to modify existing XML metadata files. As an example, an NGEE Arctic scientist use OME to register

  14. Forecast of Vegetable Prices in China Based on ARMA Model--A Case Study of Cabbage, Cucumber and Tomatoes%基于 ARMA 模型的我国蔬菜价格预测--以大白菜、黄瓜和番茄为例

    Institute of Scientific and Technical Information of China (English)

    周明明; 张瑞涛; 王俊芹; 王余丁

    2015-01-01

    This paper set up the ARMA model which based on time series, through searching the prices of agricultural market from 2002 to 2014 as sample datas with Eviews8.0 software, so as to analysis and forecast the prices of Chinese cabbage, cucumber and tomato. The results showed that vegetable prices would show a rising trend over the next two years with seasonal fluctuation, among them, the seasonal factor was the main factor to influence the price fluctuation of vegeta-bles.%以2002-2014年农产品集贸市场价格为样本数据,利用 Eviews 8.0软件,建立了基于时间序列分析的 AR-MA 模型,对大白菜、黄瓜和番茄的价格进行了分析预测。结果表明,我国蔬菜价格未来2 a 将呈上涨趋势,且具有季节性波动的特征,其中季节因素是影响蔬菜价格波动的最主要因素。

  15. Comparisons of dioxin levels of cucumber varieties and cultivation periods

    Energy Technology Data Exchange (ETDEWEB)

    Eun, H.; Watanabe, E.; Ishii, Y.; Ueji, M. [National Inst. for Agro-Environmental Sciences, Tsukuba (Japan); Narita, I.; Nakamura, K. [Saitama Prefecture Agriculture and Forestry Research Center, Saitama (Japan)

    2004-09-15

    According to a 2001 survey on Daily Intake in Japan, the total dioxins intake of a person in Japan amounts to 1.68 pg-TEQ per kg of body weight/day on average. The sharing a percentage of agricultural crops was about 3%in Japanese TDI amounts. However, all cases collect samples from supermarkets to estimate TDI of dioxins, which make it difficult to understand under what environment, food samples were pretreated and cultivated. Especially, TDI values in agricultural crops are probably dependent on the collection situation. In the agricultural environment, some reports indicate that dioxins have accumulated in paddy and upland in Japan due to the past use of some types of agricultural chemicals, which contained dioxins as impurities. Furthermore, taking the atmospheric pathway, for example, dioxins in the ambient air are associated with particulate matter and fall to the ground, contaminating agricultural land. Thus, it has been emphasized that dioxin compounds have a possibility to have adverse effect on vegetables. However, there is little understanding related to this fact in the country and worldwide. Empirical studies conducted in Japan and abroad have reported low residual concentrations of dioxins in cucumbers (Cucumis sativus L.), a member of the gourd family. However, there have been extremely few instances of research involving overall comparisons of cultivation environments. Thus, we studied the persistence of dioxins in cucumbers of different varieties cultivated outdoors over varying cultivation periods, conducting thorough experiments to elucidate the actual conditions and mechanisms of dioxin contamination of cucumbers.

  16. Enantioselective degradation of metalaxyl in cucumber, cabbage, spinach and pakchoi.

    Science.gov (United States)

    Wang, Meiyun; Zhang, Qing; Cong, Lujing; Yin, Wei; Wang, Minghua

    2014-01-01

    The enantioselective degradation behaviors of the acylamino acid fungicide metalaxyl in vegetables (cucumber, cabbage, spinach and pakchoi) under field and greenhouse conditions were elucidated by reversed-phase high-performance liquid chromatography (HPLC). A cellulose tris (3-chloro-4-methyl phenyl carbamate) chiral column (Lux Cellulose-2) was used for the chiral separation of the enantiomers using acetonitrile-0.1% formic acid solution (40:60, v/v) as mobile phase at a flow rate of 1.0 mL min(-1). The two enantiomers could be completely separated with a resolution (Rs) of 5.2. The linearity range, matrix effect, precision and recovery were evaluated. The method was successfully applied for the enantioselective analysis of metalaxyl in cucumber, cabbage, spinach and pakchoi under different conditions. The results showed that R-enantiomer dissipated faster than S-enantiomer in cucumber of greenhouse. Inversely, a preferential degradation of S-form was found in spinach and pakchoi under field and greenhouse conditions. No stereoselective degradation in cabbage was observed. These results can be applied for evaluating the environmental risk and food safety. Copyright © 2013 Elsevier Ltd. All rights reserved.

  17. SENSORY ANALYSIS OF CUCUMBER VARIETIES AT DIFFERENT HARVEST TIMES I. SALAD CUCUMBERS

    Directory of Open Access Journals (Sweden)

    Galina PEVICHAROVA

    2007-11-01

    Full Text Available During the period 2001-2002 sensory analysis of six salad cucumber varieties was carried out. The aim of this experiment was to assess the influence of the harvest time on the fruit sensory properties. Flesh colour was the most stable character while appearance, skin colour, aroma, texture, taste and total sensory evaluation varied during the three investigated harvest periods. Two-way analysis of variance proved significant effect of the varieties, harvest time and its interaction on all sensory characters. Depending on the harvest time some of the varieties changed their places one toward other by total sensory evaluation. Therefore, it could not be made reliable conclusions of data obtained from one harvest time. The number of harvest times as well as the number of vegetations should be more then one in order to receive more accurate information for sensory characteristics.

  18. Using of Automatic Metadata Providing

    Directory of Open Access Journals (Sweden)

    P. Šimek

    2013-12-01

    Full Text Available The paper deals with the necessity of systemic solution for metadata providing by local archives into central repositories and its subsequent implementatiton by the Department of Information Technologies, Faculty of Economics and Management, Czech University of Life Sciences in Prague, for the needs of the agrarian WWW AGRIS portal. The system supports the OAI-PMH (Open Archive Initiative – Protocol for Metadata Harvesting protocol, several metadata formats and thesauri and meets the quality requirements: functionality, high level of reliability, applicability, sustainability and transferability. The SW application for the OAI-PMH requests’ servicing is run in the setting of the WWW Apache server using an efficient PHP framework Nette and database dibi layer.

  19. U.S. EPA Metadata Editor (EME)

    Data.gov (United States)

    U.S. Environmental Protection Agency — The EPA Metadata Editor (EME) allows users to create geospatial metadata that meets EPA's requirements. The tool has been developed as a desktop application that...

  20. Enriching The Metadata On CDS

    CERN Document Server

    Chhibber, Nalin

    2014-01-01

    The project report revolves around the open source software package called Invenio. It provides the tools for management of digital assets in a repository and drives CERN Document Server. Primary objective is to enhance the existing metadata in CDS with data from other libraries. An implicit part of this task is to manage disambiguation (within incoming data), removal of multiple entries and handle replications between new and existing records. All such elements and their corresponding changes are integrated within Invenio to make the upgraded metadata available on the CDS. Latter part of the report discuss some changes related to the Invenio code-base itself.

  1. Metadata for semantic and social applications

    OpenAIRE

    2008-01-01

    Metadata is a key aspect of our evolving infrastructure for information management, social computing, and scientific collaboration. DC-2008 will focus on metadata challenges, solutions, and innovation in initiatives and activities underlying semantic and social applications. Metadata is part of the fabric of social computing, which includes the use of wikis, blogs, and tagging for collaboration and participation. Metadata also underlies the development of semantic applications, and the Semant...

  2. Analysis of 50 Cucumber Accessions by RAPD Markers

    Institute of Scientific and Technical Information of China (English)

    2002-01-01

    Genetic diversity of 50 cucumber (Cucumis sativus L.) accessions from American, Holland, Japan and China was detected and evaluated using RAPD markers. 25 selected primers produced 215 scorable polymorphic RAPD bands and the ratio of polymorphism is 86.98%. Four main groups of cucumber accessions could be distinguished from UPGMA analysis: Occidental cucumber, South-China cucumber, North-China cucumber and Xishuangbanna cucumber. Our result confirmed that cucumber is a narrow-based germplasm, nevertheless RAPD analysis was still useful in cucumber genotypic differentiation. More significantly, Xishuangbanna cucumber (Cucumis sativus L. Var Xishuangbannanesis Qi et Yuan), a mutation of cucumber, was clustered together to a special group in the study, which implied its special status in cucumber germplasm.

  3. High-throughput sequencing, characterization and detection of new and conserved cucumber miRNAs.

    Directory of Open Access Journals (Sweden)

    Germán Martínez

    Full Text Available Micro RNAS (miRNAs are a class of endogenous small non coding RNAs involved in the post-transcriptional regulation of gene expression. In plants, a great number of conserved and specific miRNAs, mainly arising from model species, have been identified to date. However less is known about the diversity of these regulatory RNAs in vegetal species with agricultural and/or horticultural importance. Here we report a combined approach of bioinformatics prediction, high-throughput sequencing data and molecular methods to analyze miRNAs populations in cucumber (Cucumis sativus plants. A set of 19 conserved and 6 known but non-conserved miRNA families were found in our cucumber small RNA dataset. We also identified 7 (3 with their miRNA* strand not previously described miRNAs, candidates to be cucumber-specific. To validate their description these new C. sativus miRNAs were detected by northern blot hybridization. Additionally, potential targets for most conserved and new miRNAs were identified in cucumber genome.In summary, in this study we have identified, by first time, conserved, known non-conserved and new miRNAs arising from an agronomically important species such as C. sativus. The detection of this complex population of regulatory small RNAs suggests that similarly to that observe in other plant species, cucumber miRNAs may possibly play an important role in diverse biological and metabolic processes.

  4. Identification and bioinformatics comparison of two novel phosphatases in monoecious and gynoecious cucumber lines

    Science.gov (United States)

    Pawełkowicz, Magdalena E.; Wojcieszek, Michał; Osipowski, Paweł; Krzywkowski, Tomasz; PlÄ der, Wojciech; Przybecki, Zbigniew

    2016-09-01

    Two Arabidopsis thaliana genes from the PP2C family of protein phosphatases (AtABI1 and AtABI2) were used to find orthologous genes in the Cucumis sativus L. cv. Borszczagowski (cucumber) genome. Cucumber has been used as a model plant for sex expression studies because although it has been defined as a monoecious species, numerous genotypes are known to produce only female, only male, or hermaphroditic flowers. We identified two new orthologous genes of AtABI1 and AtABI2 in the cucumber genome and named them CsABI1 and CsABI2. To determine the relationships between the regulation of CsABI1 and CsABI2 and flower morphogenesis in cucumber, we performed various computational analyses to define the structure of the genes, and to predict regulatory elements and protein motifs in their sequences. We also performed an expression analysis to identify differences in the expression levels of CsABI1 and CsABI2 in vegetative and generative tissues (leaf, shoot apex, and flower buds) of monoecious (B10) and gynoecious (2gg) cucumber lines. We found that the expressions of CsABI1 and CsABI2 differed in male and female floral buds, and correlated these findings with the abscisic acid signaling pathways in male and female flowers.

  5. The Common Metadata Repository: A High Performance, High Quality Metadata Engine for Next Generation EOSDIS Applications

    Science.gov (United States)

    Pilone, D.; Baynes, K.; Farley, J. D.; Murphy, K. J.; Ritz, S.; Northcutt, R.; Cherry, T. A.; Gokey, C.; Wanchoo, L.

    2013-12-01

    As data archives grow and more data becomes accessible online, cataloging, searching, and extracting relevant data from these archives becomes a critical part of Earth Science research. Current metadata systems such as ECHO, EMS, and GCMD require metadata providers to maintain multiple, disparate systems utilizing different formats and different mechanisms for submitting and updating their entries. As an end user or application developer, this inconsistency reduces the value of the metadata and complicates finding and using earth science data. Building on the results of the ESDIS Metadata Harmony Study of 2012, we completed a Metadata Harmony Study 2 in 2013 to identify specific areas where metadata quality, consistency, and availability could be improved while reducing the burden on metadata providers. In this talk we discuss the results of the Metadata Harmony 2 study and the impacts on the EOSDIS community. Specifically, we'll discuss: - The Unified Metadata Model (UMM) that unifies the ECHO, GCMD, and EMS metadata models - The Common Metadata Repository (CMR) which will provide a high performance common repository for both EOSDIS and non-EOSDIS metadata unifying the ECHO, GCMD, and EMS metadata stores - The CMR's approach to automated metadata assessment and review combined with a dedicated a science support team to significantly improve quality and consistency across Earth Science metadata - Future expandability of the CMR beyond basic science metadata to incorporate multiple metadata concepts including visualization, data attributes, services, documentation, and tool metadata - The CMR's relationship with evolving metadata standards such as work from the MENDS group and ISO19115 NASA Best Practices This talk is targeted at metadata providers, consumers, and Earth Science Data end users to introduce components that will support next generation EOSDIS applications.

  6. Kaloko-Honokohau National Historical Park Vegetation Mapping Project - Spatial Vegetation Data

    Data.gov (United States)

    National Park Service, Department of the Interior — This metadata is for the vegetation and land-use geo-spatial database for Kaloko-Honokohau National Historical Park (KAHO), Island of Hawai'i and surrounding areas....

  7. Spatial Vegetation Data for Washita Battlefield National Historic Site Vegetation Mapping Project

    Data.gov (United States)

    National Park Service, Department of the Interior — This metadata is for the vegetation and land-use geo-spatial database for Washita Battlefield National Historic Site and surrounding areas. This project is...

  8. Spatial Vegetation Data for San Antonio Missions National Historical Park Vegetation Mapping Project

    Data.gov (United States)

    National Park Service, Department of the Interior — This metadata is for the vegetation and land-use geo-spatial database for San Antonio Missions National Historical Park (SAAN) and surrounding areas. This project is...

  9. Spatial Vegetation Data for Grand Teton National Park Vegetation Mapping Project

    Data.gov (United States)

    National Park Service, Department of the Interior — This metadata is for the vegetation and land-use geo-spatial database for Grand Teton National Park and surrounding areas. This project is authorized as part of the...

  10. Spatial Vegetation Data for Lyndon B. Johnson National Historical Park Vegetation Mapping Project

    Data.gov (United States)

    National Park Service, Department of the Interior — his metadata is for the vegetation and land-use geo-spatial database for Lydon B. Johnson National Historical Site and surrounding areas. This project is authorized...

  11. Spatial Vegetation Data for Theodore Roosevelt National Park Vegetation Mapping Project

    Data.gov (United States)

    National Park Service, Department of the Interior — This metadata is for all coverages associated with the vegetation land cover and land use geo-spatial database for Theodore Roosevelt National Park and surrounding...

  12. Spatial Vegetation Data for Sunset Crater Volcano National Monument Vegetation Mapping Project

    Data.gov (United States)

    National Park Service, Department of the Interior — This metadata is for the vegetation and land-use geo-spatial database for Sunset Crater Volcano National Monument and surrounding areas. The project is authorized as...

  13. Spatial Vegetation Data for Walnut Canyon National Monument Vegetation Mapping Project

    Data.gov (United States)

    National Park Service, Department of the Interior — This metadata is for the vegetation and land-use geo-spatial database for Walnut Canyon National Monument and surrounding areas. The project is authorized as part of...

  14. Spatial Vegetation Data for Craters of Moon National Monument and Preserve Vegetation Mapping Project

    Data.gov (United States)

    National Park Service, Department of the Interior — This metadata is for the vegetation and land-use geo-spatial database for Craters of Moon National Monument and Preserve (CRMO), Idaho and surrounding areas. This...

  15. Pu`ukohola Heiau National Historic Site Vegetation Mapping Project - Spatial Vegetation Data

    Data.gov (United States)

    National Park Service, Department of the Interior — This metadata is for the vegetation and land-use geo-spatial database for Pu'ukohola Heiau National Historic Site (PUHE) , Island of Hawai'i and surrounding areas....

  16. Effect of perchlorate in fertilisers on lettuce and fruit vegetables : Uptake and distribution of perchlorate in greenhouse soil-grown butterhead lettuce and solless-grown cucumber, sweet pepper, round and cherry tomate

    NARCIS (Netherlands)

    Voogt, W.; Eveleens, B.A.; Steenhuizen, J.W.; Vandevelde, I.; Vis, de R.; Lommel, van J.

    2014-01-01

    In 2013 traces of perchlorate were detected in fruits and vegetable samples. Because perchlorate (ClO4 -) is part of a group of substances (goitrogens) that may inhibit the uptake of iodine by the thyroid, these findings caused commotion in the markets. Fertilizers were named as one of the sources o

  17. Chicken Porridge with Sea Cucumber

    Institute of Scientific and Technical Information of China (English)

    1994-01-01

    Chicken Porridge with Sea Cucumber is a dish created according to a well-known story about Jia Chang, who raised cocks during the Tang Dynasty. Cockfighting was popular among commonfolk during the Tang Dynasty. Emperor Xuanzong selected 5,000 cocks in Chang’an, and 500 children to feed them and train them to fight. Jia Chang was one of the children. Sent to the

  18. The essential guide to metadata for books

    CERN Document Server

    Register, Renee

    2013-01-01

    In The Essential Guide to Metadata for Books, you will learn exactly what you need to know to effectively generate, handle and disseminate metadata for books and ebooks. This comprehensive but digestible document will explain the life-cycle of book metadata, industry standards, XML, ONIX and the essential elements of metadata. It will also show you how effective, well-organized metadata can improve your efforts to sell a book, especially when it comes to marketing, discoverability and converting at the point of sale. This information-packed document also includes a glossary of terms

  19. GEOSS Clearinghouse Quality Metadata Analysis

    Science.gov (United States)

    Masó, J.; Díaz, P.; Ninyerola, M.; Sevillano, E.; Pons, X.

    2012-04-01

    The proliferation of similar Earth observation digital data products increases the relevance of data quality information of those datasets. GEOSS is investing important efforts in promoting the acknowledgment of the data quality in Earth observation. Activities, such as the regular meeting of QA4EO and projects as GeoViQua have the aim to make the data quality available and visible in the GEOSS Common Infrastructure (GCI). The clearinghouse is one of the main components of the GCI, which catalogues all the known Earth observation resources and provide it via the GEO Portal. Actually, after several initiatives to stimulate that (such as AIP4) most of the relevant international data providers referenced their data in the GEOSS Component and Service Registry, therefore, the GEOSS clearinghouse can be considered a global catalogue of the main Earth observation products. However, there are some important catalogues still in the process of being integrated. We developed an exhaustive study of the data quality elements available on the metadata catalogue in the GEOSS clearinghouse, to elaborate a state-of-the-art report on data quality. The clearinghouse is harvested using the OGC CSW port. Metadata following the standard ISO 19115 is saved in XML-ISO 19139 files. The semi-automatic methodology, previously applied in regional SDIs studies, generates a big metadata database that can be further analyzed. The number of metadata records harvested was 97203 (October 2011). The two main metadata nodes studied are directly related with data quality information package (DQ_DataQuality) in ISO. These are the quality indicators (DQ_Element) and the lineage information (LI_Lineage). Moreover, we also considered the usage information (MD_Usage). The results reveal 19107 (19.66%) metadata records containing quality indicators; which include a total of 52187 quality indicators. The results show also a main representation of the positional accuracy, with 37.19% of the total

  20. DEVELOPMENT OF A METADATA MANAGEMENT SYSTEM FOR AN INTERDISCIPLINARY RESEARCH PROJECT

    Directory of Open Access Journals (Sweden)

    C. Curdt

    2012-07-01

    Full Text Available In every interdisciplinary, long-term research project it is essential to manage and archive all heterogeneous research data, produced by the project participants during the project funding. This has to include sustainable storage, description with metadata, easy and secure provision, back up, and visualisation of all data. To ensure the accurate description of all project data with corresponding metadata, the design and implementation of a metadata management system is a significant duty. Thus, the sustainable use and search of all research results during and after the end of the project is particularly dependent on the implementation of a metadata management system. Therefore, this paper will describe the practical experiences gained during the development of a scientific research data management system (called the TR32DB including the corresponding metadata management system for the multidisciplinary research project Transregional Collaborative Research Centre 32 (CRC/TR32 'Patterns in Soil-Vegetation-Atmosphere Systems'. The entire system was developed according to the requirements of the funding agency, the user and project requirements, as well as according to recent standards and principles. The TR32DB is basically a combination of data storage, database, and web-interface. The metadata management system was designed, realized, and implemented to describe and access all project data via accurate metadata. Since the quantity and sort of descriptive metadata depends on the kind of data, a user-friendly multi-level approach was chosen to cover these requirements. Thus, the self-developed CRC/TR32 metadata framework is designed. It is a combination of general, CRC/TR32 specific, as well as data type specific properties.

  1. Log-less metadata management on metadata server for parallel file systems.

    Science.gov (United States)

    Liao, Jianwei; Xiao, Guoqiang; Peng, Xiaoning

    2014-01-01

    This paper presents a novel metadata management mechanism on the metadata server (MDS) for parallel and distributed file systems. In this technique, the client file system backs up the sent metadata requests, which have been handled by the metadata server, so that the MDS does not need to log metadata changes to nonvolatile storage for achieving highly available metadata service, as well as better performance improvement in metadata processing. As the client file system backs up certain sent metadata requests in its memory, the overhead for handling these backup requests is much smaller than that brought by the metadata server, while it adopts logging or journaling to yield highly available metadata service. The experimental results show that this newly proposed mechanism can significantly improve the speed of metadata processing and render a better I/O data throughput, in contrast to conventional metadata management schemes, that is, logging or journaling on MDS. Besides, a complete metadata recovery can be achieved by replaying the backup logs cached by all involved clients, when the metadata server has crashed or gone into nonoperational state exceptionally.

  2. Log-Less Metadata Management on Metadata Server for Parallel File Systems

    Directory of Open Access Journals (Sweden)

    Jianwei Liao

    2014-01-01

    Full Text Available This paper presents a novel metadata management mechanism on the metadata server (MDS for parallel and distributed file systems. In this technique, the client file system backs up the sent metadata requests, which have been handled by the metadata server, so that the MDS does not need to log metadata changes to nonvolatile storage for achieving highly available metadata service, as well as better performance improvement in metadata processing. As the client file system backs up certain sent metadata requests in its memory, the overhead for handling these backup requests is much smaller than that brought by the metadata server, while it adopts logging or journaling to yield highly available metadata service. The experimental results show that this newly proposed mechanism can significantly improve the speed of metadata processing and render a better I/O data throughput, in contrast to conventional metadata management schemes, that is, logging or journaling on MDS. Besides, a complete metadata recovery can be achieved by replaying the backup logs cached by all involved clients, when the metadata server has crashed or gone into nonoperational state exceptionally.

  3. The Effect of Washing and Peeling on Reduction of Dithiocarbamates Residues in Cucumber and Tomato

    Directory of Open Access Journals (Sweden)

    Mohammad Reza Mehrasebi

    2016-03-01

    Full Text Available Background: Dithiocarbamates, the main group of fungicides, are used to control about 400 pathogens in more than 70 crops. These pesticides are widely applied to crops including potato, cereal, apple, pear and leafy vegetables throughout the world since 1960. From the late 1980s, using these fungicides has caused much debate among regulators about their long-term effects on consumers and occupational users. Method: In this study the residues of Dithiocarbamates in cucumber and tomato using the colorimetric method (Keppel method was measured. Respectively 80 and 45 samples of greenhouse cucumber and tomato were collected from Zanjan vegetables center in autumns and winter 2013. The samples were analyzed in 4 treatments of: unwashed, washing with water, washing whit detergent and peeling. Result: The results showed that the average concentration of Dithiocarbamates residues in unwashed greenhouse cucumber and tomatoes were 384.5 µg/kg and 65 µg/kg respectively. 35% and 5% of unwashed and water washed cucumber and tomato samples (respectively had higher Dithiocarbamates residue than MRL recommended by Institute of Standards and Industrial Research of Iran (0.5mg/kg. Conclusion: The treatments of washing and peeling had significant effect on the reduction of Dithiocarbamates residues in the all samples.

  4. Evolution in Metadata Quality: Common Metadata Repository's Role in NASA Curation Efforts

    Science.gov (United States)

    Gilman, Jason; Shum, Dana; Baynes, Katie

    2016-01-01

    Metadata Quality is one of the chief drivers of discovery and use of NASA EOSDIS (Earth Observing System Data and Information System) data. Issues with metadata such as lack of completeness, inconsistency, and use of legacy terms directly hinder data use. As the central metadata repository for NASA Earth Science data, the Common Metadata Repository (CMR) has a responsibility to its users to ensure the quality of CMR search results. This poster covers how we use humanizers, a technique for dealing with the symptoms of metadata issues, as well as our plans for future metadata validation enhancements. The CMR currently indexes 35K collections and 300M granules.

  5. Genome-wide characterization of simple sequence repeats in cucumber (Cucumis sativus L.

    Directory of Open Access Journals (Sweden)

    Simon Philipp W

    2010-10-01

    Full Text Available Abstract Background Cucumber, Cucumis sativus L. is an important vegetable crop worldwide. Until very recently, cucumber genetic and genomic resources, especially molecular markers, have been very limited, impeding progress of cucumber breeding efforts. Microsatellites are short tandemly repeated DNA sequences, which are frequently favored as genetic markers due to their high level of polymorphism and codominant inheritance. Data from previously characterized genomes has shown that these repeats vary in frequency, motif sequence, and genomic location across taxa. During the last year, the genomes of two cucumber genotypes were sequenced including the Chinese fresh market type inbred line '9930' and the North American pickling type inbred line 'Gy14'. These sequences provide a powerful tool for developing markers in a large scale. In this study, we surveyed and characterized the distribution and frequency of perfect microsatellites in 203 Mbp assembled Gy14 DNA sequences, representing 55% of its nuclear genome, and in cucumber EST sequences. Similar analyses were performed in genomic and EST data from seven other plant species, and the results were compared with those of cucumber. Results A total of 112,073 perfect repeats were detected in the Gy14 cucumber genome sequence, accounting for 0.9% of the assembled Gy14 genome, with an overall density of 551.9 SSRs/Mbp. While tetranucleotides were the most frequent microsatellites in genomic DNA sequence, dinucleotide repeats, which had more repeat units than any other SSR type, had the highest cumulative sequence length. Coding regions (ESTs of the cucumber genome had fewer microsatellites compared to its genomic sequence, with trinucleotides predominating in EST sequences. AAG was the most frequent repeat in cucumber ESTs. Overall, AT-rich motifs prevailed in both genomic and EST data. Compared to the other species examined, cucumber genomic sequence had the highest density of SSRs (although

  6. Marker-assisted backcross selection in an interspecific Cucumis population broadens the genetic base of cucumber (Cucumis sativus L.)

    Science.gov (United States)

    Cucumber (Cucumis sativus L.) is a major cucurbit vegetable species whose genetic base has been drastically reduced during its domestication. The crop's narrow genetic base (3-12% DNA polymorphism) has resulted from the use of limited genetic material and intense selection during plant improvement....

  7. Ontology Based Metadata Management for National Healthcare Data Dictionary

    Directory of Open Access Journals (Sweden)

    Yasemin Yüksek

    2012-02-01

    Full Text Available Ontology based metadata is based on ontologies that give formal semantics to information for content level. In this study, ontology based metadata management that intended the metadata modeling developed for National Health Data Dictionary (NHDD was proposed. NHDD is used as a reference to all health institutions in Turkey and it provides great contribution in terms of the terminology. The approach of the proposed ontology based metadata management was achieved by using modeling methodology of metadata requirements. This methodology includes determination of metadata beneficiaries, listing of metadata requirements for each beneficiary, identification of the source of metadata, categorizing of metadata and a metamodel building.

  8. Effect of cypermethrin insecticide on the microbial community in cucumber phyllosphere

    Institute of Scientific and Technical Information of China (English)

    ZHANG Baoguo; ZHANG Hongxun; JIN Bo; TANG Ling; YANG Jianzhou; LI Baoju; ZHUANG Guoqiang; BAI Zhihui

    2008-01-01

    Cucumber (Cucumis sativus) is one of the most widely used vegetable in the world, and different pesticides have been extensively used for controlling the insects and disease pathogens of this plant. However, little is known about how the pesticides affect the microbial community in cucumber phyllosphere. This study was the first attempt to assess the impact of pyrethroid insecticide cyperemethrin on the microbial communities of cucumber phyllosphere using biochemical and genetic approaches. Phospholipid fatty acid (PLFA) assay indicated that cyperemethrin insecticide treatment led to a significant increase in both total and bacterial biomass and a decrease in fungal biomass and the ratio of Gram-positive (GP) bacteria to Gram-negative (GN) bacteria within the cucumber phyllosphere. Principal-component analyses (PCA) suggested that the number of unsaturated and cyclopropane PLFAs (16:1ω9t,18:1ω7, cy17:0, cy19:0) increased with the insecticide treatment, whereas the saturated PLFA i16:0, i17:0 decreased. The increase of GN bacteria implied that the cypermethrin insecticide might be a nutrient for the growth of these phyllosphere microbes. Terminal restriction fragment length polymorphism (T-RFLP) reinforced the PLFA results. A significant change of bacterial community structure was observed in the separate dendrogram cluster between control and treated samples with the cucumber phyllosphere following cypermethrin insecticide treatment. Moreover, the increased terminal restriction fragments (T-RFs) (58, 62, 89, 99, 119, 195, 239,311,340, and 473 bp) indicated that some bacteria might play a significant role in the insecticide degradation within the cucumber phylosphere, whereas the disappeared T-RFs (44, 51, 96, 223, 306, and 338 bp) implied that some other bacteria might potentially serve as microbial indicator of cyperemethrin insecticide exposure.

  9. Field Plot Points for Washita Battlefield National Historic Site Vegetation Mapping Project

    Data.gov (United States)

    National Park Service, Department of the Interior — This metadata is for the 2005 vegetation data points (spatial database) created from the sample vegetation plots collected at Washita Battlefield National Historic...

  10. Field Plot Points for Craters of Moon National Monument and Preserve Vegetation Mapping Project

    Data.gov (United States)

    National Park Service, Department of the Interior — This metadata is for the 2006 vegetation data points (spatial database) created from the sample vegetation plots collected at Craters of Moon National Monument and...

  11. Field Plot Points for Fort Larned National Historic Site Vegetation Mapping Project

    Data.gov (United States)

    National Park Service, Department of the Interior — This metadata is for the 2005 vegetation data points (spatial database) created from the sample vegetation plots collected at Fort Larned National Historic Site.

  12. XML for catalogers and metadata librarians

    CERN Document Server

    Cole, Timothy W

    2013-01-01

    How are today's librarians to manage and describe the everexpanding volumes of resources, in both digital and print formats? The use of XML in cataloging and metadata workflows can improve metadata quality, the consistency of cataloging workflows, and adherence to standards. This book is intended to enable current and future catalogers and metadata librarians to progress beyond a bare surfacelevel acquaintance with XML, thereby enabling them to integrate XML technologies more fully into their cataloging workflows. Building on the wealth of work on library descriptive practices, cataloging, and metadata, XML for Catalogers and Metadata Librarians explores the use of XML to serialize, process, share, and manage library catalog and metadata records. The authors' expert treatment of the topic is written to be accessible to those with little or no prior practical knowledge of or experience with how XML is used. Readers will gain an educated appreciation of the nuances of XML and grasp the benefit of more advanced ...

  13. Security in a Replicated Metadata Catalogue

    CERN Document Server

    Koblitz, B

    2007-01-01

    The gLite-AMGA metadata has been developed by NA4 to provide simple relational metadata access for the EGEE user community. As advanced features, which will be the focus of this presentation, AMGA provides very fine-grained security also in connection with the built-in support for replication and federation of metadata. AMGA is extensively used by the biomedical community to store medical images metadata, digital libraries, in HEP for logging and bookkeeping data and in the climate community. The biomedical community intends to deploy a distributed metadata system for medical images consisting of various sites, which range from hospitals to computing centres. Only safe sharing of the highly sensitive metadata as provided in AMGA makes such a scenario possible. Other scenarios are digital libraries, which federate copyright protected (meta-) data into a common catalogue. The biomedical and digital libraries have been deployed using a centralized structure already for some time. They now intend to decentralize ...

  14. A Distributed Infrastructure for Metadata about Metadata: The HDMM Architectural Style and PORTAL-DOORS System

    Directory of Open Access Journals (Sweden)

    Carl Taswell

    2010-06-01

    Full Text Available Both the IRIS-DNS System and the PORTAL-DOORS System share a common architectural style for pervasive metadata networks that operate as distributed metadata management systems with hierarchical authorities for entity registering and attribute publishing. Hierarchical control of metadata redistribution throughout the registry-directory networks constitutes an essential characteristic of this architectural style called Hierarchically Distributed Mobile Metadata (HDMM with its focus on moving the metadata for who what where as fast as possible from servers in response to requests from clients. The novel concept of multilevel metadata about metadata has also been defined for the PORTAL-DOORS System with the use of entity, record, infoset, representation and message metadata. Other new features implemented include the use of aliases, priorities and metaresources.

  15. Preservation of acidified cucumbers with a natural preservative combination of fumaric acid and allyl isothiocyanate that target lactic acid bacteria and yeasts.

    Science.gov (United States)

    Pérez-Díaz, I M; McFeeters, R F

    2010-05-01

    Without the addition of preservative compounds cucumbers acidified with 150 mM acetic acid with pH adjusted to 3.5 typically undergo fermentation by lactic acid bacteria. Fumaric acid (20 mM) inhibited growth of Lactobacillus plantarum and the lactic acid bacteria present on fresh cucumbers, but spoilage then occurred due to growth of fermentative yeasts, which produced ethanol in the cucumbers. Allyl isothiocyanate (2 mM) prevented growth of Zygosaccharomyces globiformis, which has been responsible for commercial pickle spoilage, as well as the yeasts that were present on fresh cucumbers. However, allyl isothiocyanate did not prevent growth of Lactobacillus plantarum. When these compounds were added in combination to acidified cucumbers, the cucumbers were successfully preserved as indicated by the fact that neither yeasts or lactic acid bacteria increased in numbers nor were lactic acid or ethanol produced by microorganisms when cucumbers were stored at 30 degrees C for at least 2 mo. This combination of 2 naturally occurring preservative compounds may serve as an alternative approach to the use of sodium benzoate or sodium metabisulfite for preservation of acidified vegetables without a thermal process.

  16. VEGETABLE GROWING - HOBBY AND BENEFIT FOR AGED PERSON HEALTH

    Directory of Open Access Journals (Sweden)

    Scurtu Ion

    2015-07-01

    Full Text Available Vegetable growing in small areas (open field, plastic tunnels, unheated or heated green house or even in balcony may be a very pleasant activity for many old persons who want to preserve their physical and mental health. Beside many common vegetable species like tomatoes, pepper, eggplant, onion, garlic, cabbage, cucumber, lettuce and so on - can be cultivated in small areas many others vegetables like broccoli, Brussels cabbage, Scorzonera hispanica, asparagus, Witloof Chicory (French endive and vegetable with medicinal properties.

  17. Critical Metadata for Spectroscopy Field Campaigns

    Directory of Open Access Journals (Sweden)

    Barbara A. Rasaiah

    2014-04-01

    Full Text Available A field spectroscopy metadata standard is defined as those data elements that explicitly document the spectroscopy dataset and field protocols, sampling strategies, instrument properties and environmental and logistical variables. Standards for field spectroscopy metadata affect the quality, completeness, reliability, and usability of datasets created in situ. Currently there is no standardized methodology for documentation of in situ spectroscopy data or metadata. This paper presents results of an international experiment comprising a web-based survey and expert panel evaluation that investigated critical metadata in field spectroscopy. The survey participants were a diverse group of scientists experienced in gathering spectroscopy data across a wide range of disciplines. Overall, respondents were in agreement about a core metadataset for generic campaign metadata, allowing for a prioritization of critical metadata elements to be proposed including those relating to viewing geometry, location, general target and sampling properties, illumination, instrument properties, reference standards, calibration, hyperspectral signal properties, atmospheric conditions, and general project details. Consensus was greatest among individual expert groups in specific application domains. The results allow the identification of a core set of metadata fields that enforce long term data storage and serve as a foundation for a metadata standard. This paper is part one in a series about the core elements of a robust and flexible field spectroscopy metadata standard.

  18. Evaluating the privacy properties of telephone metadata.

    Science.gov (United States)

    Mayer, Jonathan; Mutchler, Patrick; Mitchell, John C

    2016-05-17

    Since 2013, a stream of disclosures has prompted reconsideration of surveillance law and policy. One of the most controversial principles, both in the United States and abroad, is that communications metadata receives substantially less protection than communications content. Several nations currently collect telephone metadata in bulk, including on their own citizens. In this paper, we attempt to shed light on the privacy properties of telephone metadata. Using a crowdsourcing methodology, we demonstrate that telephone metadata is densely interconnected, can trivially be reidentified, and can be used to draw sensitive inferences.

  19. Accuracy Assessment Points for Badlands National Park Vegetation Mapping Project

    Data.gov (United States)

    National Park Service, Department of the Interior — This metadata is for the accuracy assessment data associated with the vegetation land cover and land use geospatial database for Badlands National Park and...

  20. Field Plot Points for Badlands National Park Vegetation Mapping Project

    Data.gov (United States)

    National Park Service, Department of the Interior — This metadata is for the field data associated with the vegetation land cover and land use geospatial database for Badlands National Park and surrounding areas. The...

  1. TECHNOLOGY TRANSFER FOR CUCUMBER (Cucumis sativus ...

    African Journals Online (AJOL)

    Dell

    2011-11-07

    Nov 7, 2011 ... This technology transfer trials have shown the advantages and ... Key words: Cucumber production, protected agriculture tunnels, cost benefit ratio, technology transfer, ... Use of PA can increase production by more than five.

  2. Allelopathic Potential of Cucumber Tissues Aqueous Extracts

    Institute of Scientific and Technical Information of China (English)

    DONG Lin-lin; HAO Zhi-peng; ZUO Yuan-mei; LI Xiao-lin; WANG Qian

    2011-01-01

    [ Objective] The aim of this study was to explore allelopathic effects of the water-extracted crude of cucumber plant parts on seed germination and seedling growth of lettuce ( Lactuca sativa L. ), cabbage ( Brassica pekinensis L. ), radish ( Raphanus sativus L. ) and scallion ( Allium fistulosum L. ). [ Method] The allelopathic effects of different cucumber tissues aqueous extracts were investigated on lettuce, cabbage,radish and scallion using the water-soluble allelopathic principle by seedling bioassay tests. [ Result] The trends of inhibitory effects of different cucumber parts increased with increasing extract concentrations. The inhibition effects and the inhibition rate of three aqueous extracts were more significant on root growth than shoot length. Leaf aqueous extracts represented the most exhibited and root aqueous extracts representing the least inhibitory on seed germination, shoot length and root length of lettuce, cabbage, radish and scallion. [Conclusion] This study had provided basis for allelopathic character of different cucumber plant parts.

  3. Efficacy of Fluensulfone in a Tomato–Cucumber Double Cropping System

    Science.gov (United States)

    Morris, Kelly A.; Langston, David B.; Dickson, Donald W.; Davis, Richard F.; Timper, Patricia; Noe, James P.

    2015-01-01

    Vegetable crops in the southeastern United States are commonly grown on plastic mulch with two crop cycles produced on a single mulch application. Field trials were conducted in 2013 and 2014 in two locations to evaluate the efficacy of fluensulfone for controlling Meloidogyne spp. when applied through drip irrigation to cucumber in a tomato–cucumber double-cropping system. In the spring tomato crop, 1,3-dichloropropene (1,3-D), fluensulfone, and a resistant cultivar significantly decreased root galling by 91%, 73%, and 97%, respectively, compared to the untreated control. Tomato plots from the spring were divided into split plots for the fall where the main plots were the spring treatment and the subplots were cucumber either treated with fluensulfone (3.0 kg a.i./ha. via drip irrigation) or left untreated. The fall application of fluensulfone improved cucumber vigor and reduced gall ratings compared to untreated subplots. Fluensulfone reduced damage from root-knot nematodes when applied to the first crop as well as provided additional protection to the second crop when it was applied through a drip system. PMID:26941459

  4. Soil respiration in cucumber field under crop rotation in solar greenhouse

    Directory of Open Access Journals (Sweden)

    Yinli Liang

    2014-08-01

    Full Text Available Crop residues are the primary source of carbon input in the soil carbon pool. Crop rotation can impact the plant biomass returned to the soil, and influence soil respiration. To study the effect of previous crops on soil respiration in cucumber (Cucumis statirus L. fields in solar greenhouses, soil respiration, plant height, leaf area and yield were measured during the growing season (from the end of Sept to the beginning of Jun the following year from 2007 to 2010. The cucumber was grown following fallow (CK, kidney bean (KB, cowpea (CP, maize for green manure (MGM, black bean for green manure (BGM, tomato (TM, bok choy (BC. As compared with CK, KB, CP, MGM and BGM may increase soil respiration, while TM and BC may decrease soil respiration at full fruit stage in cucumber fields. Thus attention to the previous crop arrangement is a possible way of mitigating soil respiration in vegetable fields. Plant height, leaf area and yield had similar variation trends under seven previous crop treatments. The ratio of yield to soil respiration revealed that MGM is the crop of choice previous to cucumber when compared with CK, KB, CP, BGM, TM and BC.

  5. Leveraging Metadata to Create Better Web Services

    Science.gov (United States)

    Mitchell, Erik

    2012-01-01

    Libraries have been increasingly concerned with data creation, management, and publication. This increase is partly driven by shifting metadata standards in libraries and partly by the growth of data and metadata repositories being managed by libraries. In order to manage these data sets, libraries are looking for new preservation and discovery…

  6. Metadata for Content-Based Image Retrieval

    Directory of Open Access Journals (Sweden)

    Adrian Sterca

    2010-12-01

    Full Text Available This paper presents an image retrieval technique that combines content based image retrieval with pre-computed metadata-based image retrieval. The resulting system will have the advantages of both approaches: the speed/efficiency of metadata-based image retrieval and the accuracy/power of content-based image retrieval.

  7. GlamMap : Visualizing library metadata

    NARCIS (Netherlands)

    Betti, Arianna; Gerrits, Dirk; Speckmann, Bettina; van den Berg, Hein

    2014-01-01

    Libraries provide access to large amounts of library metadata. Unfortunately, many libraries only offer textual interfaces for searching and browsing their holdings. Visualisations provide simpler, faster, and more efficient ways to navigate, search and study large quantities of metadata. This paper

  8. A Metadata-Rich File System

    Energy Technology Data Exchange (ETDEWEB)

    Ames, S; Gokhale, M B; Maltzahn, C

    2009-01-07

    Despite continual improvements in the performance and reliability of large scale file systems, the management of file system metadata has changed little in the past decade. The mismatch between the size and complexity of large scale data stores and their ability to organize and query their metadata has led to a de facto standard in which raw data is stored in traditional file systems, while related, application-specific metadata is stored in relational databases. This separation of data and metadata requires considerable effort to maintain consistency and can result in complex, slow, and inflexible system operation. To address these problems, we have developed the Quasar File System (QFS), a metadata-rich file system in which files, metadata, and file relationships are all first class objects. In contrast to hierarchical file systems and relational databases, QFS defines a graph data model composed of files and their relationships. QFS includes Quasar, an XPATH-extended query language for searching the file system. Results from our QFS prototype show the effectiveness of this approach. Compared to the defacto standard, the QFS prototype shows superior ingest performance and comparable query performance on user metadata-intensive operations and superior performance on normal file metadata operations.

  9. A Dynamic Metadata Community Profile for CUAHSI

    Science.gov (United States)

    Bermudez, L.; Piasecki, M.

    2004-12-01

    Common Metadata standards typically lack of domain specific elements, have limited extensibility and do not always resolve semantic heterogeneities that could occur in the annotations. To facilitate the use and extension of metadata specifications a methodology called Dynamic Community Profiles, DCP, is presented. The methodology allows to overwrite elements definitions and to specify core elements as metadata tree paths. DCP uses the Web Ontology Language (OWL), the Resource Description Framework (RDF) and XML syntax to formalize specifications and to create controlled vocabularies in ontologies, which enhances interoperability. This methodology was employed to create a metadata profile for the Consortium of Universities for the Advancement of Hydrologic Science Inc. (CUAHSI). The profile was created by extending ISO-19115:2003 geographic metadata standard and restricting the permissible values of some elements. The values used as controlled vocabularies were inferred from hydrologic keywords found in the Global Change Master Directory (GCMD) and from measurement units found in the Hydrologic Handbook. Also, a core metadata set for CUAHSI was formally expressed as tree paths, containing the ISO core set plus additional elements. Finally a tool was developed to test the extension and to allow creation of metadata instances in RDF/XML which conforms to the profile. Also this tool is able to export the core elements to other schema formats such as Metadata Template Files (MTF).

  10. Development of a new cucumber reference material for pesticide residue analysis: feasibility study for material processing, homogeneity and stability assessment.

    Science.gov (United States)

    Grimalt, Susana; Harbeck, Stefan; Shegunova, Penka; Seghers, John; Sejerøe-Olsen, Berit; Emteborg, Håkan; Dabrio, Marta

    2015-04-01

    The feasibility of the production of a reference material for pesticide residue analysis in a cucumber matrix was investigated. Cucumber was spiked at 0.075 mg/kg with each of the 15 selected pesticides (acetamiprid, azoxystrobin, carbendazim, chlorpyrifos, cypermethrin, diazinon, (α + β)-endosulfan, fenitrothion, imazalil, imidacloprid, iprodione, malathion, methomyl, tebuconazole and thiabendazole) respectively. Three different strategies were considered for processing the material, based on the physicochemical properties of the vegetable and the target pesticides. As a result, a frozen spiked slurry of fresh cucumber, a spiked freeze-dried cucumber powder and a freeze-dried cucumber powder spiked by spraying the powder were studied. The effects of processing and aspects related to the reconstitution of the material were evaluated by monitoring the pesticide levels in the three materials. Two separate analytical methods based on LC-MS/MS and GC-MS/MS were developed and validated in-house. The spiked freeze-dried cucumber powder was selected as the most feasible material and more exhaustive studies on homogeneity and stability of the pesticide residues in the matrix were carried out. The results suggested that the between-unit homogeneity was satisfactory with a sample intake of dried material as low as 0.1 g. A 9-week isochronous stability study was undertaken at -20 °C, 4 °C and 18 °C, with -70 °C designated as the reference temperature. The pesticides tested exhibited adequate stability at -20 °C during the 9-week period as well as at -70 °C for a period of 18 months. These results constitute a good basis for the development of a new candidate reference material for selected pesticides in a cucumber matrix.

  11. 黄瓜种子及其萌发期的化感作用研究%Allelopathy of Cucumber Seed during Germination

    Institute of Scientific and Technical Information of China (English)

    王广印; 韩世栋; 陈碧华; 杨和连

    2012-01-01

    In order to ascertain the allelopathy activity of cucumber seeds during germination,we studied the allelopathy effects of cucumber seeds aqueous extract,cucumber seed germination,cucumber radicle exu-dates,cucumber bud exudates,decomposed cucumber seedlings and seedling aqueous extract by adopting laboratory petri dish seed germination bioassay,using 4 categories of vegetables as receptors. The results indicated that:(l)The cucumber seed aqueous extract had an inhibitory effect on germination of Chinese cabbage, radish, tomato and cucumber seeds which showed the cucumber seed contained a few allelochemicals. (2)After extracted seed interior allelochemicals,the cucumber seed germination had allelopathy inhibitory effect on interplanted Chinese cabbage,radish and tomato seeds germination,and the cucumber radicle and bud exudates had different extent allelopathy inhibitory effect on after cultured Chinese cabbage,radish,tomato and cucumber seeds germination. The germination and growth of all vegetable receptors were inhibited to different extent with the different weight decomposed cucumber seedlings and different concentration seedling aqueous extract. It showed the concentration effect which was germination indexes,response index (RI) and synthesis effect (SE) value of vegetable receptors could decrease along with increasing of the weight of decomposed cucumber seedlings and the concentration of seedling aqueous extract. (3)The experiment of cucumber as receptor showed the allelochemicals of cucumber seeds aqueous extract and cucumber seedling organs had the autotoxicity on cucumber seed germination and growth,in which the autotoxicity of decomposed cucumber seedlings,seedling aqueous extract,cucumber radicle exudates and cucumber bud ex-udates were maximum. The studies suggested that allelochemicals of cucumber seeds aqueous extract,germination periods and seedling organs main inhibited the radicle growth, i. e. the radicle of vegetable receptors was most sensitive

  12. Mapping Methods Metadata for Research Data

    Directory of Open Access Journals (Sweden)

    Tiffany Chao

    2015-02-01

    Full Text Available Understanding the methods and processes implemented by data producers to generate research data is essential for fostering data reuse. Yet, producing the metadata that describes these methods remains a time-intensive activity that data producers do not readily undertake. In particular, researchers in the long tail of science often lack the financial support or tools for metadata generation, thereby limiting future access and reuse of data produced. The present study investigates research journal publications as a potential source for identifying descriptive metadata about methods for research data. Initial results indicate that journal articles provide rich descriptive content that can be sufficiently mapped to existing metadata standards with methods-related elements, resulting in a mapping of the data production process for a study. This research has implications for enhancing the generation of robust metadata to support the curation of research data for new inquiry and innovation.

  13. Incorporating ISO Metadata Using HDF Product Designer

    Science.gov (United States)

    Jelenak, Aleksandar; Kozimor, John; Habermann, Ted

    2016-01-01

    The need to store in HDF5 files increasing amounts of metadata of various complexity is greatly overcoming the capabilities of the Earth science metadata conventions currently in use. Data producers until now did not have much choice but to come up with ad hoc solutions to this challenge. Such solutions, in turn, pose a wide range of issues for data managers, distributors, and, ultimately, data users. The HDF Group is experimenting on a novel approach of using ISO 19115 metadata objects as a catch-all container for all the metadata that cannot be fitted into the current Earth science data conventions. This presentation will showcase how the HDF Product Designer software can be utilized to help data producers include various ISO metadata objects in their products.

  14. Collection Metadata Solutions for Digital Library Applications

    Science.gov (United States)

    Hill, Linda L.; Janee, Greg; Dolin, Ron; Frew, James; Larsgaard, Mary

    1999-01-01

    Within a digital library, collections may range from an ad hoc set of objects that serve a temporary purpose to established library collections intended to persist through time. The objects in these collections vary widely, from library and data center holdings to pointers to real-world objects, such as geographic places, and the various metadata schemas that describe them. The key to integrated use of such a variety of collections in a digital library is collection metadata that represents the inherent and contextual characteristics of a collection. The Alexandria Digital Library (ADL) Project has designed and implemented collection metadata for several purposes: in XML form, the collection metadata "registers" the collection with the user interface client; in HTML form, it is used for user documentation; eventually, it will be used to describe the collection to network search agents; and it is used for internal collection management, including mapping the object metadata attributes to the common search parameters of the system.

  15. 1978 Insect Pest Management Guide: Commercial Vegetable Crops and Greenhouse Vegetables. Circular 897.

    Science.gov (United States)

    Illinois Univ., Urbana. Cooperative Extension Service.

    This circular lists suggested uses of insecticides for the control of pests by commercial vegetable farmers. Suggestions are given for selection, dosage and application of insecticides to control pests of cabbage and related crops, beans, cucumbers and other vine crops, tomatoes, potatoes, peppers, corn, and onions. (CS)

  16. Effects of Lactic Acid Bacteria Inoculated Fermentation on Pickled Cucumbers

    OpenAIRE

    2013-01-01

    The aim of this study was to determine the effects of Lactic Acid Bacteria (LAB) fermentation on the texture and organic acid of pickled cucumbers. Texture and sensory evaluation as well as a microscopic observation were performed to study the textural differences among fresh cucumber, Spontaneous fermentation (SF) cucumber and LAB Inoculating Fermentation (LABIF) cucumber. Accumulation of seven organic acids i.e., oxalic, tartaric, malic, lactic, acetic, citric and succinic acid during cucum...

  17. THE EVOLUTION OF SOME CHEMICAL PARAMETERS DURING CUCUMBERS PICKLING

    OpenAIRE

    2013-01-01

    The evolution of some chemical indices (salt content, pH and ascorbic acid content) during cucumbers pickling was the purpose of this paper. The experience materials used in this work were: cucumbers cornichon, iodized and non-iodized salt and tap water. The samples containing cucumbers in iodized and in non-iodized brine were left to ferment, and at 3-4 days were made determinations of above mentioned indices. During pickling process, non-iodized salt has accumulated in cucumber ...

  18. Diploidization of cucumber (Cucumis sativus L. haploids by colchicine treatment

    Directory of Open Access Journals (Sweden)

    Vesselina Nikolova

    2014-02-01

    Full Text Available Haploid cucumber plants are totally infertile and do not undergo spontaneous diploidization. The use of haploids depends on the possibility of doubling the chromosome number and the obtaining of stable doubled haploids (DH. Four haploids of different genotypes propagated vegetatively were treated with colchicine in order to obtain DH. The following procedures were used: 1 apical shoot meristem treatment, 2 soaking of shoot explants, 3 placing of shoot explants on medium with colchicine. Plants of the C1 generation were evaluated in respect to morphological and cytological characters and fertility. The best result of 20.9% DH was obtained after repeated treatment of the meristem with colchicine. A large group of chimeras (28.5% was also distinguished as were haploids and tetraploids. DH plants were fertile and gave uniform progeny. Chimeras had a decreased fertility and showed disturbances in meiotic divisions.

  19. Internet experiments: methods, guidelines, metadata

    Science.gov (United States)

    Reips, Ulf-Dietrich

    2009-02-01

    The Internet experiment is now a well-established and widely used method. The present paper describes guidelines for the proper conduct of Internet experiments, e.g. handling of dropout, unobtrusive naming of materials, and pre-testing. Several methods are presented that further increase the quality of Internet experiments and help to avoid frequent errors. These methods include the "seriousness check", "warm-up," "high hurdle," and "multiple site entry" techniques, control of multiple submissions, and control of motivational confounding. Finally, metadata from sites like WEXTOR (http://wextor.org) and the web experiment list (http://genpsylab-wexlist.uzh.ch/) are reported that show the current state of Internet-based research in terms of the distribution of fields, topics, and research designs used.

  20. The Different Physiological and Antioxidative Responses of Zucchini and Cucumber to Sewage Sludge Application.

    Directory of Open Access Journals (Sweden)

    Anna Wyrwicka

    Full Text Available The present study investigates the effect of soil amended with sewage sludge on oxidative changes in zucchini and cucumber plants (Cucurbitaceae and the consequent activation of their antioxidative systems and detoxification mechanisms. The plants were grown in pots containing soil amended with three concentrations of sewage sludge (1.8 g, 5.4 g and 10.8 g per pot, while controls were potted with vegetable soil. The activities of three antioxidative enzymes, ascorbate peroxidase (APx, catalase (CAT and guaiacol peroxidase (POx, were assessed, as well as of the detoxifying enzyme S-glutathione transferase (GST. Lipid peroxidation was evaluated by measuring the extent of oxidative damage; α-tocopherol content, the main lipophilic antioxidant, was also measured. Visible symptoms of leaf blade damage after sewage sludge application occurred only on the zucchini plants. The zucchini and cucumber plants showed a range of enzymatic antioxidant responses to sewage sludge application. While APx and POx activities increased significantly with increasing sludge concentration in the zucchini plants, they decreased in the cucumber plants. Moreover, although the activity of these enzymes increased gradually with increasing doses of sewage sludge, these levels fell at the highest dose. An inverse relationship between peroxidases activity and CAT activity was observed in both investigated plant species. In contrast, although GST activity increased progressively with sludge concentration in both the zucchini and cucumber leaves, the increase in GST activity was greater in the zucchini plants, being visible at the lowest dose used. The results indicate that signs of sewage sludge toxicity were greater in zucchini than cucumber, and its defense reactions were mainly associated with increases in APx, POx and GST activity.

  1. The Different Physiological and Antioxidative Responses of Zucchini and Cucumber to Sewage Sludge Application.

    Science.gov (United States)

    Wyrwicka, Anna; Urbaniak, Magdalena

    2016-01-01

    The present study investigates the effect of soil amended with sewage sludge on oxidative changes in zucchini and cucumber plants (Cucurbitaceae) and the consequent activation of their antioxidative systems and detoxification mechanisms. The plants were grown in pots containing soil amended with three concentrations of sewage sludge (1.8 g, 5.4 g and 10.8 g per pot), while controls were potted with vegetable soil. The activities of three antioxidative enzymes, ascorbate peroxidase (APx), catalase (CAT) and guaiacol peroxidase (POx), were assessed, as well as of the detoxifying enzyme S-glutathione transferase (GST). Lipid peroxidation was evaluated by measuring the extent of oxidative damage; α-tocopherol content, the main lipophilic antioxidant, was also measured. Visible symptoms of leaf blade damage after sewage sludge application occurred only on the zucchini plants. The zucchini and cucumber plants showed a range of enzymatic antioxidant responses to sewage sludge application. While APx and POx activities increased significantly with increasing sludge concentration in the zucchini plants, they decreased in the cucumber plants. Moreover, although the activity of these enzymes increased gradually with increasing doses of sewage sludge, these levels fell at the highest dose. An inverse relationship between peroxidases activity and CAT activity was observed in both investigated plant species. In contrast, although GST activity increased progressively with sludge concentration in both the zucchini and cucumber leaves, the increase in GST activity was greater in the zucchini plants, being visible at the lowest dose used. The results indicate that signs of sewage sludge toxicity were greater in zucchini than cucumber, and its defense reactions were mainly associated with increases in APx, POx and GST activity.

  2. The Different Physiological and Antioxidative Responses of Zucchini and Cucumber to Sewage Sludge Application

    Science.gov (United States)

    Wyrwicka, Anna; Urbaniak, Magdalena

    2016-01-01

    The present study investigates the effect of soil amended with sewage sludge on oxidative changes in zucchini and cucumber plants (Cucurbitaceae) and the consequent activation of their antioxidative systems and detoxification mechanisms. The plants were grown in pots containing soil amended with three concentrations of sewage sludge (1.8 g, 5.4 g and 10.8 g per pot), while controls were potted with vegetable soil. The activities of three antioxidative enzymes, ascorbate peroxidase (APx), catalase (CAT) and guaiacol peroxidase (POx), were assessed, as well as of the detoxifying enzyme S-glutathione transferase (GST). Lipid peroxidation was evaluated by measuring the extent of oxidative damage; α-tocopherol content, the main lipophilic antioxidant, was also measured. Visible symptoms of leaf blade damage after sewage sludge application occurred only on the zucchini plants. The zucchini and cucumber plants showed a range of enzymatic antioxidant responses to sewage sludge application. While APx and POx activities increased significantly with increasing sludge concentration in the zucchini plants, they decreased in the cucumber plants. Moreover, although the activity of these enzymes increased gradually with increasing doses of sewage sludge, these levels fell at the highest dose. An inverse relationship between peroxidases activity and CAT activity was observed in both investigated plant species. In contrast, although GST activity increased progressively with sludge concentration in both the zucchini and cucumber leaves, the increase in GST activity was greater in the zucchini plants, being visible at the lowest dose used. The results indicate that signs of sewage sludge toxicity were greater in zucchini than cucumber, and its defense reactions were mainly associated with increases in APx, POx and GST activity. PMID:27327659

  3. Handbook of metadata, semantics and ontologies

    CERN Document Server

    Sicilia, Miguel-Angel

    2013-01-01

    Metadata research has emerged as a discipline cross-cutting many domains, focused on the provision of distributed descriptions (often called annotations) to Web resources or applications. Such associated descriptions are supposed to serve as a foundation for advanced services in many application areas, including search and location, personalization, federation of repositories and automated delivery of information. Indeed, the Semantic Web is in itself a concrete technological framework for ontology-based metadata. For example, Web-based social networking requires metadata describing people and

  4. CanCore: Metadata for Learning Objects

    Directory of Open Access Journals (Sweden)

    Norm Friesen

    2002-10-01

    Full Text Available The vision of reusable digital learning resources or objects, made accessible through coordinated repository architectures and metadata technologies, has gained considerable attention within distance education and training communities. However, the pivotal role of metadata in this vision raises important and longstanding issues about classification, description and meaning. The purpose of this paper is to provide an overview of this vision, focusing specifically on issues of semantics. It will describe the CanCore Learning Object Metadata Application Profile as an important first step in addressing these issues in the context of the discovery, reuse and management of learning resources or objects.

  5. SENSORY ANALYSIS OF CUCUMBER VARIETIES AT DIFFERENT HARVEST TIMES II. PICKLING CUCUMBERS

    Directory of Open Access Journals (Sweden)

    Galina PEVICHAROVA

    2010-02-01

    Full Text Available During the period 2001-2002 sensory analysis of Bulgarian pickling cucumber varieties Toni, Iren and Pobeda was carried out. The varieties had identical parent female breeding line G-3. Fresh and canned fruits were evaluated at three harvest times. It was established that sensory properties of canned fruits cannot be entirely prognosticated from panel test data of the fresh ones. For breeding purposes sensory analysis of pickling cucumbers for processing should be performed using sterilized pickling cucumbers but not only fresh ones. More precise information about visual and gustatory properties of new created lines and hybrids will be obtained by performing of sensory analysis at different harvest times.

  6. USGS Digital Orthophoto Quad (DOQ) Metadata

    Data.gov (United States)

    Minnesota Department of Natural Resources — Metadata for the USGS DOQ Orthophoto Layer. Each orthophoto is represented by a Quarter 24k Quad tile polygon. The polygon attributes contain the quarter-quad tile...

  7. Mining Building Metadata by Data Stream Comparison

    DEFF Research Database (Denmark)

    Holmegaard, Emil; Kjærgaard, Mikkel Baun

    2016-01-01

    to handle data streams with only slightly similar patterns. We have evaluated Metafier with points and data from one building located in Denmark. We have evaluated Metafier with 903 points, and the overall accuracy, with only 3 known examples, was 94.71%. Furthermore we found that using DTW for mining...... ways to annotate sensor and actuation points. This makes it difficult to create intuitive queries for retrieving data streams from points. Another problem is the amount of insufficient or missing metadata. We introduce Metafier, a tool for extracting metadata from comparing data streams. Metafier...... enables a semi-automatic labeling of metadata to building instrumentation. Metafier annotates points with metadata by comparing the data from a set of validated points with unvalidated points. Metafier has three different algorithms to compare points with based on their data. The three algorithms...

  8. FSA 2003-2004 Digital Orthophoto Metadata

    Data.gov (United States)

    Minnesota Department of Natural Resources — Metadata for the 2003-2004 FSA Color Orthophotos Layer. Each orthophoto is represented by a Quarter 24k Quad tile polygon. The polygon attributes contain the...

  9. Mining Building Metadata by Data Stream Comparison

    DEFF Research Database (Denmark)

    Holmegaard, Emil; Kjærgaard, Mikkel Baun

    2017-01-01

    to handle data streams with only slightly similar patterns. We have evaluated Metafier with points and data from one building located in Denmark. We have evaluated Metafier with 903 points, and the overall accuracy, with only 3 known examples, was 94.71%. Furthermore we found that using DTW for mining...... ways to annotate sensor and actuation points. This makes it difficult to create intuitive queries for retrieving data streams from points. Another problem is the amount of insufficient or missing metadata. We introduce Metafier, a tool for extracting metadata from comparing data streams. Metafier...... enables a semi-automatic labeling of metadata to building instrumentation. Metafier annotates points with metadata by comparing the data from a set of validated points with unvalidated points. Metafier has three different algorithms to compare points with based on their data. The three algorithms...

  10. Mathematical modelling of cucumber (cucumis sativus) drying

    Science.gov (United States)

    Shahari, N.; Hussein, S. M.; Nursabrina, M.; Hibberd, S.

    2014-07-01

    This paper investigates the applicability of using an experiment based mathematical model (empirical model) and a single phase mathematical model with shrinkage to describe the drying curve of cucumis sativus (cucumber). Drying experiments were conducted using conventional air drying and data obtained from these experiments were fitted to seven empirical models using non-linear least square regression based on the Levenberg Marquardt algorithm. The empirical models were compared according to their root mean square error (RMSE), sum of square error (SSE) and coefficient of determination (R2). A logarithmic model was found to be the best empirical model to describe the drying curve of cucumber. The numerical result of a single phase mathematical model with shrinkage was also compared with experiment data for cucumber drying. A good agreement was obtained between the model predictions and the experimental data.

  11. Predicting Privacy Attitudes Using Phone Metadata

    OpenAIRE

    2016-01-01

    With the increasing usage of smartphones, there is a corresponding increase in the phone metadata generated by individuals using these devices. Managing the privacy of personal information on these devices can be a complex task. Recent research has suggested the use of social and behavioral data for automatically recommending privacy settings. This paper is the first effort to connect users' phone use metadata with their privacy attitudes. Based on a 10-week long field study involving phone m...

  12. Implementing Metadata that Guide Digital Preservation Services

    Directory of Open Access Journals (Sweden)

    Angela Dappert

    2011-03-01

    Full Text Available Effective digital preservation depends on a set of preservation services that work together to ensure that digital objects can be preserved for the long-term. These services need digital preservation metadata, in particular, descriptions of the properties that digital objects may have and descriptions of the requirements that guide digital preservation services. This paper analyzes how these services interact and use these metadata and develops a data dictionary to support them.

  13. Persistence of Escherichia coli and Salmonella in surface soil following application of liquid hog manure for production of pickling cucumbers.

    Science.gov (United States)

    Côté, Caroline; Quessy, Sylvain

    2005-05-01

    Liquid hog manure is routinely applied to farm land as a crop fertilizer. However, this practice raises food safety concerns, especially when manure is used on fruit and vegetable crops. The objectives of this project were to evaluate the persistence of Escherichia coli and Salmonella in surface soil after application of liquid hog manure to fields where pickling cucumbers were grown and to verify the microbiological quality of harvested cucumbers. Mineral fertilizers were replaced by liquid hog manure at various ratios in the production of pickling cucumbers in a 3-year field study. The experimental design was a randomized complete block comprising four replicates in sandy loam (years 1, 2, and 3) and loamy sand (year 3). Soil samples were taken at a depth of 20 cm every 2 weeks after June application of organic and inorganic fertilizers. Vegetable samples were also taken at harvest time. Liquid hog manure, soil, and vegetable (washed and unwashed) samples were analyzed for the presence of Salmonella and E. coli. An exponential decrease of E. coli populations was observed in surface soil after the application of manure. The estimated average time required to reach undetectable concentrations of E. coli in sandy loam varied from 56 to 70 days, whereas the absence of E. coli was estimated at 77 days in loamy sand. The maximal Salmonella persistence in soil was 54 days. E. coli and Salmonella were not detected in any vegetable samples.

  14. Science friction: data, metadata, and collaboration.

    Science.gov (United States)

    Edwards, Paul N; Mayernik, Matthew S; Batcheller, Archer L; Bowker, Geoffrey C; Borgman, Christine L

    2011-10-01

    When scientists from two or more disciplines work together on related problems, they often face what we call 'science friction'. As science becomes more data-driven, collaborative, and interdisciplinary, demand increases for interoperability among data, tools, and services. Metadata--usually viewed simply as 'data about data', describing objects such as books, journal articles, or datasets--serve key roles in interoperability. Yet we find that metadata may be a source of friction between scientific collaborators, impeding data sharing. We propose an alternative view of metadata, focusing on its role in an ephemeral process of scientific communication, rather than as an enduring outcome or product. We report examples of highly useful, yet ad hoc, incomplete, loosely structured, and mutable, descriptions of data found in our ethnographic studies of several large projects in the environmental sciences. Based on this evidence, we argue that while metadata products can be powerful resources, usually they must be supplemented with metadata processes. Metadata-as-process suggests the very large role of the ad hoc, the incomplete, and the unfinished in everyday scientific work.

  15. What Metadata Principles Apply to Scientific Data?

    Science.gov (United States)

    Mayernik, M. S.

    2014-12-01

    Information researchers and professionals based in the library and information science fields often approach their work through developing and applying defined sets of principles. For example, for over 100 years, the evolution of library cataloging practice has largely been driven by debates (which are still ongoing) about the fundamental principles of cataloging and how those principles should manifest in rules for cataloging. Similarly, the development of archival research and practices over the past century has proceeded hand-in-hand with the emergence of principles of archival arrangement and description, such as maintaining the original order of records and documenting provenance. This project examines principles related to the creation of metadata for scientific data. The presentation will outline: 1) how understandings and implementations of metadata can range broadly depending on the institutional context, and 2) how metadata principles developed by the library and information science community might apply to metadata developments for scientific data. The development and formalization of such principles would contribute to the development of metadata practices and standards in a wide range of institutions, including data repositories, libraries, and research centers. Shared metadata principles would potentially be useful in streamlining data discovery and integration, and would also benefit the growing efforts to formalize data curation education.

  16. Metadata Management in Scientific Computing

    CERN Document Server

    Seidel, Eric L

    2012-01-01

    Complex scientific codes and the datasets they generate are in need of a sophisticated categorization environment that allows the community to store, search, and enhance metadata in an open, dynamic system. Currently, data is often presented in a read-only format, distilled and curated by a select group of researchers. We envision a more open and dynamic system, where authors can publish their data in a writeable format, allowing users to annotate the datasets with their own comments and data. This would enable the scientific community to collaborate on a higher level than before, where researchers could for example annotate a published dataset with their citations. Such a system would require a complete set of permissions to ensure that any individual's data cannot be altered by others unless they specifically allow it. For this reason datasets and codes are generally presented read-only, to protect the author's data; however, this also prevents the type of social revolutions that the private sector has seen...

  17. SENSORY ANALYSIS OF CUCUMBER VARIETIES AT DIFFERENT HARVEST TIMES II. PICKLING CUCUMBERS

    OpenAIRE

    2010-01-01

    During the period 2001-2002 sensory analysis of Bulgarian pickling cucumber varieties Toni, Iren and Pobeda was carried out. The varieties had identical parent female breeding line G-3. Fresh and canned fruits were evaluated at three harvest times. It was established that sensory properties of canned fruits cannot be entirely prognosticated from panel test data of the fresh ones. For breeding purposes sensory analysis of pickling cucumbers for processing should be performed using sterilized p...

  18. rDNA-ITS sequence analysis of pathogens of cucumber downy mildew and cucumber powdery mildew

    Institute of Scientific and Technical Information of China (English)

    Na WANG; Yajun MA; Cuiyun YANG; Guanghui DAI; Zhezhi WANG

    2008-01-01

    To determine the pathogens of cucumber downy mildew and cucumber powdery mildew by molecular marker,we amplified and sequenced the rDNA-ITS region of the pathogens of cucumber downy mildew and cucumber powdery mildew collected from the Shanghai region.The intra-/interspecific sequence difference was analyzed by rDNA-ITS sequence.The results show that the length of rDNA-ITS1 and rDNA-ITS2 of cucumber downy mildew's pathogen was 141 bp and 406 bp,respectively,with GC contents of 41.13% in ITS1 and 46.8% (Minhang and Jinshan District,sml and sm2) or 46.55% (Pudong District,sm3) in ITS2.The rDNA-ITS sequence was intraspecific conservation.The interspecific difference was related with their kin relationship.The pathogen of cucumber downy mildew was identified as Pseudoperonospora cubensis by molecular marker.The length of rDNA-ITS1 and rDNA-ITS2 of cucumber powdery mildew's pathogen was 136 bp and 89 bp,respectively,with GC contents being 59.56% and 66.29%,and rDNA-ITS sequence being highly conservative in this study that was the same as Sphaerotheca cucurbitae.But the sequence difference between the strains in the Shanghai region in this study with S.fuliginea was 4.5%,which was identified by morphology.It is suggested that the pathogen of cucumber powdery mildew should be further clarified and determined.

  19. Ontology-based geographic information semantic metadata integration

    Science.gov (United States)

    Zhan, Qin; Li, Deren; Zhang, Xia; Xia, Yu

    2009-10-01

    Metadata is important to facilitate data sharing among Geospatial Information Communities in distributed environment. For unanimous understanding and standard production of metadata annotations, metadata specifications are documented such as Geographic Information Metadata Standard (ISO19115-2003), the Content Standard for Digital Geospatial Metadata (CSDGM), and so on. Though these specifications provide frameworks for description of geographic data, there are two problems which embarrass sufficiently data sharing. One problem is that specifications are lack of domainspecific semantics. Another problem is that specifications can not always solve semantic heterogeneities. To solve the former problem, an ontology-based geographic information metadata extension framework is proposed which can incorporate domain-specific semantics. Besides, for solving the later problem, metadata integration mechanism based on the proposed extension is studied. In this paper, integration of metadata is realized through integration of ontologies. So integration of ontologies is also discussed. By ontology-based geographic information semantic metadata integration, sharing of geographic data is realized more efficiently.

  20. Exposing and Harvesting Metadata Using the OAI Metadata Harvesting Protocol A Tutorial

    CERN Document Server

    Warner, Simeon

    2001-01-01

    In this article I outline the ideas behind the Open Archives Initiative metadata harvesting protocol (OAIMH), and attempt to clarify some common misconceptions. I then consider how the OAIMH protocol can be used to expose and harvest metadata. Perl code examples are given as practical illustration.

  1. Mapping metadata for SWHi : Aligning schemas with library metadata for a historical ontology

    NARCIS (Netherlands)

    Zhang, Junte; Fahmi, Ismail; Ellermann, Henk; Bouma, Gosse; Weske, M; Hacid, MS; Godart, C

    2007-01-01

    What are the possibilities of Semantic Web technologies for organizations which traditionally have lots of structured data, such as metadata, available? A library is such a particular organization. We mapped a digital library's descriptive (bibliographic) metadata for a large historical document col

  2. Exposing and harvesting metadata using the OAI metadata harvesting protocol: A tutorial

    CERN Document Server

    Warner, Simeon

    2001-01-01

    In this article I outline the ideas behind the Open Archives Initiative metadata harvesting protocol (OAIMH), and attempt to clarify some common misconceptions. I then consider how the OAIMH protocol can be used to expose and harvest metadata. Perl code examples are given as practical illustration.

  3. Streamlining geospatial metadata in the Semantic Web

    Science.gov (United States)

    Fugazza, Cristiano; Pepe, Monica; Oggioni, Alessandro; Tagliolato, Paolo; Carrara, Paola

    2016-04-01

    In the geospatial realm, data annotation and discovery rely on a number of ad-hoc formats and protocols. These have been created to enable domain-specific use cases generalized search is not feasible for. Metadata are at the heart of the discovery process and nevertheless they are often neglected or encoded in formats that either are not aimed at efficient retrieval of resources or are plainly outdated. Particularly, the quantum leap represented by the Linked Open Data (LOD) movement did not induce so far a consistent, interlinked baseline in the geospatial domain. In a nutshell, datasets, scientific literature related to them, and ultimately the researchers behind these products are only loosely connected; the corresponding metadata intelligible only to humans, duplicated on different systems, seldom consistently. Instead, our workflow for metadata management envisages i) editing via customizable web- based forms, ii) encoding of records in any XML application profile, iii) translation into RDF (involving the semantic lift of metadata records), and finally iv) storage of the metadata as RDF and back-translation into the original XML format with added semantics-aware features. Phase iii) hinges on relating resource metadata to RDF data structures that represent keywords from code lists and controlled vocabularies, toponyms, researchers, institutes, and virtually any description one can retrieve (or directly publish) in the LOD Cloud. In the context of a distributed Spatial Data Infrastructure (SDI) built on free and open-source software, we detail phases iii) and iv) of our workflow for the semantics-aware management of geospatial metadata.

  4. Effects of Lactic Acid Bacteria Inoculated Fermentation on Pickled Cucumbers

    Directory of Open Access Journals (Sweden)

    Xiaoyi Ji

    2013-12-01

    Full Text Available The aim of this study was to determine the effects of Lactic Acid Bacteria (LAB fermentation on the texture and organic acid of pickled cucumbers. Texture and sensory evaluation as well as a microscopic observation were performed to study the textural differences among fresh cucumber, Spontaneous fermentation (SF cucumber and LAB Inoculating Fermentation (LABIF cucumber. Accumulation of seven organic acids i.e., oxalic, tartaric, malic, lactic, acetic, citric and succinic acid during cucumber pickling were also studied. The disruption extent of the middle lamella in SF cucumber displayed more obviously than that in LABIF cucumber, implying that LABIF contributed to keep the cucumber original structure intact. Based on the organic acid accumulation pattern, in SF LAB and Acetic Acid Bacteria (AAB fermented simultaneously, while in LABIF LAB fermented beforehand thus being in dominant position, then AAB fermented vigorously in a acidic condition created by LAB. The acetic acid accumulaton pattern could be regarded as the distinctive feature between SF and LABIF. The orgnic acids produced in LABIF were higher than that in SF. The final score of sensory evaluation combining texture analysis demonstrated that LABIF overmatched SF. It was concluded that LABIF could obviously enhance the quality of pickled cucumber and overwhelming SF, due to LABIF more beneficial to keep the cucumber original structure intact and organic acids accumulation.

  5. Genetic basis of mitochondrial sorting in cucumber

    Science.gov (United States)

    Regeneration of cucumber (Cucumis sativus) from cell cultures produces plants with distinct mosaic (MSC) phenotypes, misshapen cotyledons and leaves, reduced fertility, and low seed germination. The MSC phenotypes are paternally transmitted and associated with deletions or under-representations of s...

  6. Cucurbits [Cucumber, melon, pumpkin and squash

    Science.gov (United States)

    The focus of this chapter is on the edible members of the Cucurbitaceae family. The three important food-grade cucurbit genera Citrullus, Cucumis, and Cucurbita include the species Citrullus lanatus watermelons), Cucumis melo (cantaloupes and other sweet melons), Cucumis sativa (cucumbers and pick...

  7. Imagery metadata development based on ISO/TC 211 standards

    Directory of Open Access Journals (Sweden)

    Rong Xie

    2007-04-01

    Full Text Available This paper reviews the present status and major problems of the existing ISO standards related to imagery metadata. An imagery metadata model is proposed to facilitate the development of imagery metadata on the basis of conformance to these standards and combination with other ISO standards related to imagery. The model presents an integrated metadata structure and content description for any imagery data for finding data and data integration. Using the application of satellite data integration in CEOP as an example, satellite imagery metadata is developed, and the resulting satellite metadata list is given.

  8. Production Guides for Vegetable Entrees, Soups, Desserts, Pastries and Salads Developed for Use in Central Food Preparation Facilities. Fort Lee, Interim Facility

    Science.gov (United States)

    1974-09-01

    105 Tossed Vegetable Salad 106 Tossed Lettuce, Cucumber and Tomato Salad 107 Cottage Cheese Salads Cottage Cheese Salad 108 Cottage Cheese and...Salad) Mixed Fruit Salad Salads with Dressing Carrot and Raisin Salad Sliced Cucumber and Onion Salad Cabbage and Carrot Slav with Cream...Dressing Cole Slav with Cream Dressing Vegetable Slav with Cream Dressing Waldorf Salad Macaroni Salad Potato Salad Kidney Bean Salad Pickled Beet and

  9. Metadata aided run selection at ATLAS

    Science.gov (United States)

    Buckingham, R. M.; Gallas, E. J.; C-L Tseng, J.; Viegas, F.; Vinek, E.; ATLAS Collaboration

    2011-12-01

    Management of the large volume of data collected by any large scale scientific experiment requires the collection of coherent metadata quantities, which can be used by reconstruction or analysis programs and/or user interfaces, to pinpoint collections of data needed for specific purposes. In the ATLAS experiment at the LHC, we have collected metadata from systems storing non-event-wise data (Conditions) into a relational database. The Conditions metadata (COMA) database tables not only contain conditions known at the time of event recording, but also allow for the addition of conditions data collected as a result of later analysis of the data (such as improved measurements of beam conditions or assessments of data quality). A new web based interface called "runBrowser" makes these Conditions Metadata available as a Run based selection service. runBrowser, based on PHP and JavaScript, uses jQuery to present selection criteria and report results. It not only facilitates data selection by conditions attributes, but also gives the user information at each stage about the relationship between the conditions chosen and the remaining conditions criteria available. When a set of COMA selections are complete, runBrowser produces a human readable report as well as an XML file in a standardized ATLAS format. This XML can be saved for later use or refinement in a future runBrowser session, shared with physics/detector groups, or used as input to ELSSI (event level Metadata browser) or other ATLAS run or event processing services.

  10. Response of wild bees (Hymenoptera: Apoidea: Anthophila) to surrounding land cover in Wisconsin pickling cucumber.

    Science.gov (United States)

    Lowenstein, D M; Huseth, A S; Groves, R L

    2012-06-01

    Cucumber (Cucumis sativus L.) is among the plants highly dependent on insect-mediated pollination, but little is known about its unmanaged pollinators. Both domestic and wild bee populations in central Wisconsin pickling cucumber fields were assessed using a combination of pan trapping and floral observations before and during bloom. Together with land cover analyses extending 2,000 m from field centers, the relationship of land cover components and bee abundance and diversity were examined. Over a 2-yr sample interval distributed among 18 experimental sites, 3,185 wild bees were collected representing >60 species. A positive association was found between both noncrop and herbaceous areas with bee abundance and diversity only during bloom. Response of bee abundance and diversity to land cover was strongest at larger buffers presumably because of the heterogeneous nature of the landscape and connectivity between crop and noncrop areas. These results are consistent with previous research that has found a weak response of wild bees to surrounding vegetation in moderately fragmented areas. A diverse community of wild bees is present within the fields of a commercial cucumber system, and there is evidence of floral visitation by unmanaged bees. This evidence emphasizes the importance of wild pollinators in fragmented landscapes and the need for additional research to investigate the effectiveness of individual species in pollen deposition.

  11. HANABA TARANU regulates the shoot apical meristem and leaf development in cucumber (Cucumis sativus L.).

    Science.gov (United States)

    Ding, Lian; Yan, Shuangshuang; Jiang, Li; Liu, Meiling; Zhang, Juan; Zhao, Jianyu; Zhao, Wensheng; Han, Ying-Yan; Wang, Qian; Zhang, Xiaolan

    2015-12-01

    The shoot apical meristem (SAM) is essential for continuous organogenesis in higher plants, while the leaf is the primary source organ and the leaf shape directly affects the efficiency of photosynthesis. HANABA TARANU (HAN) encodes a GATA3-type transcription factor that functions in floral organ development, SAM organization, and embryo development in Arabidopsis, but is involved in suppressing bract outgrowth and promoting branching in grass species. Here the function of the HAN homologue CsHAN1 was characterized in cucumber, an important vegetable with great agricultural and economic value. CsHAN1 is predominantly expressed at the junction of the SAM and the stem, and can partially rescue the han-2 floral organ phenotype in Arabidopsis. Overexpression and RNAi of CsHAN1 transgenic cucumber resulted in retarded growth early after embryogenesis and produced highly lobed leaves. Further, it was found that CsHAN1 may regulate SAM development through regulating the WUSCHEL (WUS) and SHOOT MERISTEMLESS (STM) pathways, and mediate leaf development through a complicated gene regulatory network in cucumber.

  12. Investigation on diazinon and oxydemeton-methyl residues in cucumbers grown in Kerman greenhouses.

    Science.gov (United States)

    Ganjeizadeh Rohani, Fatemeh; Mahdavi, Vahideh; Aminaei, M Mehdi

    2014-07-01

    Pesticides are considered as the most polluting substances. The residue of pesticides in agricultural crops, especially in greenhouse harvests, has been reported critical. Cucumber, considered as a vegetable, is an agricultural product which is commonly found in the Iranian food basket. The current study aims to assess the level of diazinon and oxydemeton-methyl existing in cucumbers sampled from Kerman greenhouses. The pesticide residue was extracted by acetone and dichloromethane. The extracts were cleaned up according to the solid-phase extraction method. The pesticide residues were then determined by capillary gas chromatography with nitrogen-phosphorus detection. The recoveries were 83 and 85 %, the limit of detection was 0.028 and 0.034 mg/kg, and the limits of qualification were 0.093 and 0.113 mg/kg for diazinon and oxydemeton-methyl in cucumber samples, respectively. The median of diazinon residue was detected 0.582 mg/kg, which was 11.64 times the national maximum residue limit (MRL) (0.05 mg/kg), and the median for oxydemeton-methyl was 1.910 mg/kg, being 1.91 times the MRL (1 mg/kg).

  13. UV-B radiation does not limit carbohydrate level and carbohydrate metabolism in cucumber leaves

    Directory of Open Access Journals (Sweden)

    Magdalena Rybus-Zając

    2014-08-01

    Full Text Available Cucumber is a vegetable exhibiting relatively high sensitivity to environmental stress factors. When it is grown outdoors, from early stages of development there is a real risk of exposure to elevated UV-B radiation. In order to explain the effects of time-dependent UV-B doses on carbohydrate level and metabolism, the photosynthetic activity, accumulation of carbohydrates and activities of carbohydrate-related enzymes were determined in the cucumber leaves. Elevated UV-B radiation led to an increase in the rate of photosynthesis, which was reflected by an increase in SPAD values. Higher photosynthetic activity resulted in an increase in levels of soluble sugars. In view of the above-mentioned results, radiation stress led to a UV-B time-dependent dose increase in the activity of two enzymes decomposing carbohydrate: invertase and glucosidase. Our results suggest that the exposure of cucumber plants to supplemental UV-B doses does not limit the availability of the photoassimilate. Carbohydrates are required to provide not only respiratory energy for protection, maintenance (and repair of plant activity and structure, but also provide biosynthetic carbon skeletons for secondary metabolite synthesis

  14. 6-Benzylaminopurine alleviates chilling injury of postharvest cucumber fruit through modulating antioxidant system and energy status.

    Science.gov (United States)

    Chen, Bingxia; Yang, Huqing

    2013-06-01

    6-Benzylaminopurine (6-BA) has a close relationship with the stress resistance of plants. Little research has been carried out on the effects of 6-BA on the cold resistance of postharvest fruits and vegetables. Therefore the aim of the present study was to evaluate the effects of 6-BA on chilling injury (CI), antioxidant system and energy status in cucumber during storage. The results showed that 6-BA at 50 mmol L(-1) was most effective to restrain CI in cucumber fruit. Fruits treated with 50 mmol L(-1) 6-BA maintained higher levels of chlorophyll, ascorbic acid, total phenolics and total antioxidant capacity. Furthermore, this treatment reduced the increases in membrane permeability and lipid peroxidation, delayed the increases in both rate of O2•- production and H2O2 content and increased the activities of superoxide dismutase (SOD), catalase (CAT), ascorbate peroxidase (APX) and glutathione reductase (GR) under chilling stress. The treatment also increased the content of adenosine triphosphate (ATP) and resulted in a higher level of energy charge. These results indicated that 6-BA alleviated CI in cucumber fruit through improving antioxidant enzyme activities and total antioxidant capacity and maintaining higher levels of ATP content and energy charge. © 2012 Society of Chemical Industry.

  15. The Effect of Different Cucurbit Rootstocks on Some Morphological and Physiological Traits of Cucumber (Cucumis sativus cv. Super Dominus

    Directory of Open Access Journals (Sweden)

    reihane Mesgari

    2017-02-01

    Full Text Available Introduction: Cucumber is one of the most important vegetable crops for the local consumption and exportation. The use of grafted vegetable seedlings has been popular in many countries during recent years. Growing fruit-bearing vegetables, chiefly tomato, cucumber and watermelon through grafted seedlings become a widespread practice worldwide. Grafting is a valuable technique to avoid soil-borne diseases, provide biotic and abiotic stress tolerance, enhance nutrient uptake, optimize water use, and increase fruit yield and quality. Vegetable grafting is a new topic in Iran and there are a limited number of studies on grafted vegetable production. However, attention to grafting by researchers has recently increased. Suitable rootstocks should be identified and characterized for the effective utilization of grafting. The rootstock's vigorous root system increases the efficiency of water and nutrient absorption, and may also serve as a source of endogenous plant hormones, thus leading to increased growth and yield in addition to disease control. In the present study, we investigated the response of two Cucurbita sp. and an Iranian melon as rootstocks for cucumber. Materials and methods: In order to study the effect of cucurbit rootstocks and grafting method on growth, yield and fruit quality of cucumber (Cucumis sativus cv. Super Dominus, an experiment was conducted as a factorial design in the base of RCBD with three replications in the greenhouse and research farm, University of Zanjan. Treatments were included three rootstocks (Cucurbita moschata L., Lagenaria siceraria and Cucumis melo L. and ungrafted plants (control and two grafting method (hole insertion and splice grafting. Seeds were sown simultaneously in plastic pots. For obtaining the same stem diameter of scion and rootstocks, cucumber seeds were planted four days earlier than rootstocks seeds. The seedlings were grown in an environment-controlled greenhouse with 25/20 day

  16. Omics Metadata Management Software v. 1 (OMMS)

    Energy Technology Data Exchange (ETDEWEB)

    2013-09-09

    Our application, the Omics Metadata Management Software (OMMS), answers both needs, empowering experimentalists to generate intuitive, consistent metadata, and to perform bioinformatics analyses and information management tasks via a simple and intuitive web-based interface. Several use cases with short-read sequence datasets are provided to showcase the full functionality of the OMMS, from metadata curation tasks, to bioinformatics analyses and results management and downloading. The OMMS can be implemented as a stand alone-package for individual laboratories, or can be configured for web-based deployment supporting geographically dispersed research teams. Our software was developed with open-source bundles, is flexible, extensible and easily installed and run by operators with general system administration and scripting language literacy.

  17. Building a Disciplinary Metadata Standards Directory

    Directory of Open Access Journals (Sweden)

    Alexander Ball

    2014-07-01

    Full Text Available The Research Data Alliance (RDA Metadata Standards Directory Working Group (MSDWG is building a directory of descriptive, discipline-specific metadata standards. The purpose of the directory is to promote the discovery, access and use of such standards, thereby improving the state of research data interoperability and reducing duplicative standards development work.This work builds upon the UK Digital Curation Centre's Disciplinary Metadata Catalogue, a resource created with much the same aim in mind. The first stage of the MSDWG's work was to update and extend the information contained in the catalogue. In the current, second stage, a new platform is being developed in order to extend the functionality of the directory beyond that of the catalogue, and to make it easier to maintain and sustain. Future work will include making the directory more amenable to use by automated tools.

  18. Sea Cucumbers Metabolites as Potent Anti-Cancer Agents

    OpenAIRE

    Janakiram, Naveena B; Altaf Mohammed; RAO, CHINTHALAPALLY V.

    2015-01-01

    Sea cucumbers and their extracts have gained immense popularity and interest among researchers and nutritionists due to their nutritive value, potential health benefits, and use in the treatment of chronic inflammatory diseases. Many areas of the world use sea cucumbers in traditional foods and folk medicine. Though the actual components and their specific functions still remain to be investigated, most sea cucumber extracts are being studied for their anti-inflammatory functions, immunostimu...

  19. U.S. EPAs Public Geospatial Metadata Service

    Data.gov (United States)

    U.S. Environmental Protection Agency — EPAs public geospatial metadata service provides external parties (Data.gov, GeoPlatform.gov, and the general public) with access to EPA's geospatial metadata...

  20. Kaloko-Honokohau National Historical Park Vegetation Mapping Project - Field Plots, Observation and Accuracy Assessment Points

    Data.gov (United States)

    National Park Service, Department of the Interior — This metadata is for the 2008 vegetation (classification) field plots (spatial database) and 2010 accuracy assessment points (spatial database) created from the...

  1. Accuracy Assessment Points for Theodore Roosevelt National Park Vegetation Mapping Project

    Data.gov (United States)

    National Park Service, Department of the Interior — This metadata is for the accuracy assessment data associated with the vegetation land cover and land use geospatial database for Theodore Roosevelt National Park and...

  2. Metadata Schema Used in OCLC Sampled Web Pages

    OpenAIRE

    Fei Yu

    2005-01-01

    The tremendous growth of Web resources has made information organization and retrieval more and more difficult. As one approach to this problem, metadata schemas have been developed to characterize Web resources. However, many questions have been raised about the use of metadata schemas such as which metadata schemas have been used on the Web? How did they describe Web accessible information? What is the distribution of these metadata schemas among Web pages? Do certain schemas dominate the o...

  3. From CLARIN Component Metadata to Linked Open Data

    NARCIS (Netherlands)

    Durco, M.; Windhouwer, Menzo

    2014-01-01

    In the European CLARIN infrastructure a growing number of resources are described with Component Metadata. In this paper we describe a transformation to make this metadata available as linked data. After this first step it becomes possible to connect the CLARIN Component Metadata with other valuable

  4. Handling multiple metadata streams regarding digital learning material

    NARCIS (Netherlands)

    Roes, J.B.M.; Vuuren, J. van; Verbeij, N.; Nijstad, H.

    2010-01-01

    This paper presents the outcome of a study performed in the Netherlands on handling multiple metadata streams regarding digital learning material. The paper describes the present metadata architecture in the Netherlands, the present suppliers and users of metadata and digital learning materials. It

  5. A quick scan on possibilities for automatic metadata generation

    NARCIS (Netherlands)

    Benneker, Frank

    2006-01-01

    The Quick Scan is a report on research into useable solutions for automatic generation of metadata or parts of metadata. The aim of this study is to explore possibilities for facilitating the process of attaching metadata to learning objects. This document is aimed at developers of digital learning

  6. Multimedia Learning Systems Based on IEEE Learning Object Metadata (LOM).

    Science.gov (United States)

    Holzinger, Andreas; Kleinberger, Thomas; Muller, Paul

    One of the "hottest" topics in recent information systems and computer science is metadata. Learning Object Metadata (LOM) appears to be a very powerful mechanism for representing metadata, because of the great variety of LOM Objects. This is on of the reasons why the LOM standard is repeatedly cited in projects in the field of eLearning…

  7. A quick scan on possibilities for automatic metadata generation

    NARCIS (Netherlands)

    Benneker, Frank

    2006-01-01

    The Quick Scan is a report on research into useable solutions for automatic generation of metadata or parts of metadata. The aim of this study is to explore possibilities for facilitating the process of attaching metadata to learning objects. This document is aimed at developers of digital learning

  8. CsAGP1, a gibberellin-responsive gene from cucumber hypocotyls, encodes a classical arabinogalactan protein and is involved in stem elongation.

    Science.gov (United States)

    Park, Me Hea; Suzuki, Yoshihito; Chono, Makiko; Knox, J Paul; Yamaguchi, Isomaro

    2003-03-01

    Fluorescence differential display was used to isolate the gibberellin (GA)-responsive gene, CsAGP1, from cucumber (Cucumis sativus) hypocotyls. A sequence analysis of CsAGP1 indicated that the gene putatively encodes a "classical" arabinogalactan protein (AGP) in cucumber. Transgenic tobacco (Nicotiana tabacum) plants overexpressing CsAGP1 under the control of the cauliflower mosaic virus 35S promoter produced a Y(betaGlc)(3)-reactive proteoglycan in addition to AGPs present in wild-type tobacco plants. Immuno-dot blotting of the product, using anti-AGP antibodies, showed that the CsAGP1 protein had the AGP epitopes common to AGP families. The transcription level of CsAGP1 in cucumber hypocotyls increased in response not only to GA but also to indole-3-acetic acid. Although CsAGP1 is expressed in most vegetative tissues of cucumber, including the shoot apices and roots, the GA treatment resulted in an increase in the mRNA level of CsAGP1 only in the upper part of the hypocotyls. Y(betaGlc)(3), which selectively binds AGPs, inhibited the hormone-promoted elongation of cucumber seedling hypocotyls. Transgenic plants ectopically expressing CsAGP1 showed a taller stature and earlier flowering than the wild-type plants. These observations suggest that CsAGP1 is involved in stem elongation.

  9. Characterization of siRNAs derived from cucumber green mottle mosaic virus in infected cucumber plants.

    Science.gov (United States)

    Li, Yongqiang; Deng, Congliang; Shang, Qiaoxia; Zhao, Xiaoli; Liu, Xingliang; Zhou, Qi

    2016-02-01

    Virus-derived small interfering RNAs (vsiRNAs) of cucumber green mottle mosaic virus (CGMMV), a member of the genus Tobamovirus, were characterised in cucumber plants by deep sequencing. CGMMV vsiRNAs of 21-22 nt in length predominated, suggesting that there might be a conserved mechanism of DCL2 and DCL4 involvement in the biogenesis of vsiRNAs, as well as a common RNA silencing pathway in CGMMV-infected cucumber plants. The 5'-terminal base of vsiRNAs was biased towards C/A/U, suggesting that CGMMV vsiRNAs might be loaded into diverse AGO-containing RISCs to disturb the gene expression of host plants. Possible targets for some of the vsiRNAs were also predicted.

  10. MODS: The Metadata Object Description Schema.

    Science.gov (United States)

    Guenther, Rebecca S.

    2003-01-01

    Focuses on the Metadata Object Description Schema (MODS) developed by the Library of Congress' Network Development and MARC Standards Office. Discuses reasons for MODS development; advantages of MODS; features of MODS; prospective uses for MODS; relationship with MARC and MARCXML; comparison with Dublin Core element set; and experimentation with…

  11. Distributed Version Control and Library Metadata

    Directory of Open Access Journals (Sweden)

    Galen M. Charlton

    2008-06-01

    Full Text Available Distributed version control systems (DVCSs are effective tools for managing source code and other artifacts produced by software projects with multiple contributors. This article describes DVCSs and compares them with traditional centralized version control systems, then describes extending the DVCS model to improve the exchange of library metadata.

  12. Digital Preservation and Metadata: History, Theory, Practice.

    Science.gov (United States)

    Lazinger, Susan S.

    This book addresses critical issues of digital preservation, providing guidelines for protecting resources from dealing with obsolescence, to responsibilities, methods of preservation, cost, and metadata formats. It also shows numerous national and international institutions that provide frameworks for digital libraries and archives. The first…

  13. The Metadata Approach to Accessing Government Information.

    Science.gov (United States)

    Moen, William E.

    2001-01-01

    Provides an overview of the articles in this issue, includes a history of the development of GILS (Government Information Locator Service), and offers perspectives on the importance of metadata for resource description and resource discovery. Presents interoperability as a challenge in integrating access to government information locator services.…

  14. Metadata Exporter for Scientific Photography Management

    Science.gov (United States)

    Staudigel, D.; English, B.; Delaney, R.; Staudigel, H.; Koppers, A.; Hart, S.

    2005-12-01

    Photographs have become an increasingly important medium, especially with the advent of digital cameras. It has become inexpensive to take photographs and quickly post them on a website. However informative photos may be, they still need to be displayed in a convenient way, and be cataloged in such a manner that makes them easily locatable. Managing the great number of photographs that digital cameras allow and creating a format for efficient dissemination of the information related to the photos is a tedious task. Products such as Apple's iPhoto have greatly eased the task of managing photographs, However, they often have limitations. Un-customizable metadata fields and poor metadata extraction tools limit their scientific usefulness. A solution to this persistent problem is a customizable metadata exporter. On the ALIA expedition, we successfully managed the thousands of digital photos we took. We did this with iPhoto and a version of the exporter that is now available to the public under the name "CustomHTMLExport" (http://www.versiontracker.com/dyn/moreinfo/macosx/27777), currently undergoing formal beta testing This software allows the use of customized metadata fields (including description, time, date, GPS data, etc.), which is exported along with the photo. It can also produce webpages with this data straight from iPhoto, in a much more flexible way than is already allowed. With this tool it becomes very easy to manage and distribute scientific photos.

  15. Multiple amine oxidases in cucumber seedlings.

    Science.gov (United States)

    Percival, F W; Purves, W K

    1974-10-01

    Cell-free extracts of cucumber (Cucumis sativus L. cv. National Pickling) seedlings were found to have amine oxidase activity when assayed with tryptamine as a substrate. Studies of the effect of lowered pH on the extract indicated that this activity was heterogeneous, and three amine oxidases could be separated by ion exchange chromatography. The partially purified enzymes were tested for their activities with several substrates and for their sensitivities to various amine oxidase inhibitors. One of the enzymes may be a monoamine oxidase, although it is inhibited by some diamine oxidase inhibitors. The other two enzymes have properties more characteristic of the diamine oxidases. The possible relationship of the amine oxidases to indoleacetic acid biosynthesis in cucumber seedlings is discussed.

  16. Dissipation kinetics of metalaxyl in cucumber.

    Science.gov (United States)

    Rattan, G S; Sharma, Neeraj

    2012-05-01

    Residues of metalaxyl were estimated in cucumber fruits using Gas Liquid Chromatography (GLC) with Nitrogen phosphorus detector (NPD). Following three applications of Ridomil-MZ @ 0.3% and 0.6%, the average initial deposits of metalaxyl were observed to be 0.19 and 0.24 mg kg(-1), respectively. The residues dissipated below the limit of quantification (LOQ) of 0.02 mg kg(-1) after 10 days at both the dosages. The half-life values (T(1/2)) of metalaxyl was worked out to be 3.5 and 3.0 days, respectively at 0.3% and 0.6% concentration. Thus, a waiting period of 1 day was suggested for the safe consumption of metalaxyl treated cucumber.

  17. Bacterial contamination of cucumber fruit through adhesion.

    Science.gov (United States)

    Reina, Laura D; Fleming, Henry P; Breidt, Frederick

    2002-12-01

    In this study, the adhesion of bacteria to fresh cucumber surfaces in aqueous suspension was shown to be dependent on time of incubation, inoculum species and concentration, and temperature. The adhesion of bacteria to the fruit in wash water was less extensive at lower temperatures and shorter exposure times. Various species of bacteria were adsorbed to cucumber surfaces in the following relative order: Salmonella Typhimurium > Staphylococcus aureus > Lactobacillus plantarum > Listeria monocytogenes. Cells were adsorbed at all temperatures tested (5, 15, 25, and 35 degrees C) at levels that depended on incubation time, but the numbers of cells adsorbed were larger at higher incubation temperatures. Levels of adhesion of bacteria to dewaxed fruit were higher for L. monocytogenes and lower for Salmonella Typhimurium, L. plantarum, and S. aureus than were levels of adhesion to waxed fruit.

  18. Metadata Effectiveness in Internet Discovery: An Analysis of Digital Collection Metadata Elements and Internet Search Engine Keywords

    Science.gov (United States)

    Yang, Le

    2016-01-01

    This study analyzed digital item metadata and keywords from Internet search engines to learn what metadata elements actually facilitate discovery of digital collections through Internet keyword searching and how significantly each metadata element affects the discovery of items in a digital repository. The study found that keywords from Internet…

  19. Making Interoperability Easier with NASA's Metadata Management Tool (MMT)

    Science.gov (United States)

    Shum, Dana; Reese, Mark; Pilone, Dan; Baynes, Katie

    2016-01-01

    While the ISO-19115 collection level metadata format meets many users' needs for interoperable metadata, it can be cumbersome to create it correctly. Through the MMT's simple UI experience, metadata curators can create and edit collections which are compliant with ISO-19115 without full knowledge of the NASA Best Practices implementation of ISO-19115 format. Users are guided through the metadata creation process through a forms-based editor, complete with field information, validation hints and picklists. Once a record is completed, users can download the metadata in any of the supported formats with just 2 clicks.

  20. Metadata in Chaos: how researchers tag radio broadcasts

    DEFF Research Database (Denmark)

    Lykke, Marianne; Lund, Haakon; Skov, Mette

    2015-01-01

    CHAOS (Cultural Heritage Archive Open System) provides streaming access to more than 500,000 broadcasts by the Danish Broadcast Corporation from 1931 and onwards. The archive is part of the LARM project with the purpose of enabling researchers to search, annotate, and interact with recordings....... To optimally support the researchers a user-centred approach was taken to develop the platform and related metadata scheme. Based on the requirements a three level metadata scheme was developed: (1) core archival metadata, (2) LARM metadata, and (3) project-specific metadata. The paper analyses how researchers.......fm’s strength in providing streaming access to a large, shared corpus of broadcasts....

  1. QTL Mapping by SLAF-seq and Expression Analysis of Candidate Genes for Aphid Resistance in Cucumber

    Directory of Open Access Journals (Sweden)

    Danna Liang

    2016-07-01

    Full Text Available Cucumber, a very important vegetable crop worldwide, is easily damaged by pests. Aphid is one of the most serious cucumber pests and frequently cause severe damage to commercially produced crops. Understanding the genetic mechanisms underlying pest resistance is important for aphid-resistant cucumber varieties breeding. In this study, two parental cucumber lines, JY30 (aphid susceptible and EP6392 (aphid resistant, and pools of resistant and susceptible (n = 50 each plants from 1000 F2 individuals derived from crossing JY30 with EP6392, were used to detect genomic regions associated with aphid resistance in cucumbers. The analysis was performed using specific length amplified fragment sequencing (SLAF-seq, bulked segregant analysis (BSA and single nucleotide polymorphism index (SNP-index methods. A main effect QTL (quantitative trait locus of 0.31 Mb on Chr5, including 43 genes, was identified by association analysis. Sixteen of the 43 genes were identified as potentially associated with aphid resistance through gene annotation analysis. The effect of aphid infestation on the expression of these candidate genes screened by SLAF-seq was investigated in EP6392 plants by qRT-PCR. The results indicated that 7 genes including encoding transcription factor MYB59-like (Csa5M641610.1, auxin transport protein BIG-like (Csa5M642140.1, F-box/kelch-repeat protein At5g15710-like (Csa5M642160.1, transcription factor HBP-1a-like (Csa5M642710.1, beta-glucan-binding protein (Csa5M643380.1, endo-1,3(4-beta-glucanase 1-like (Csa5M643880.1, and proline-rich receptor-like protein kinase PERK10-like (Csa5M643900.1, out of the 16 genes were down regulated after aphid infestation, whereas 5 genes including encoding probable leucine-rich repeat receptor-like serine/threonine-protein kinase At5g15730-like (Csa5M642150.1, Stress-induced protein KIN2 (Csa5M643240.1 and Csa5M643260.1, F-box family protein (Csa5M643280.1, F-box/kelch-repeat protein (Csa5M643290.1, were up

  2. Efficient processing of MPEG-21 metadata in the binary domain

    Science.gov (United States)

    Timmerer, Christian; Frank, Thomas; Hellwagner, Hermann; Heuer, Jörg; Hutter, Andreas

    2005-10-01

    XML-based metadata is widely adopted across the different communities and plenty of commercial and open source tools for processing and transforming are available on the market. However, all of these tools have one thing in common: they operate on plain text encoded metadata which may become a burden in constrained and streaming environments, i.e., when metadata needs to be processed together with multimedia content on the fly. In this paper we present an efficient approach for transforming such kind of metadata which are encoded using MPEG's Binary Format for Metadata (BiM) without additional en-/decoding overheads, i.e., within the binary domain. Therefore, we have developed an event-based push parser for BiM encoded metadata which transforms the metadata by a limited set of processing instructions - based on traditional XML transformation techniques - operating on bit patterns instead of cost-intensive string comparisons.

  3. Towards Data Value-Level Metadata for Clinical Studies.

    Science.gov (United States)

    Zozus, Meredith Nahm; Bonner, Joseph

    2017-01-01

    While several standards for metadata describing clinical studies exist, comprehensive metadata to support traceability of data from clinical studies has not been articulated. We examine uses of metadata in clinical studies. We examine and enumerate seven sources of data value-level metadata in clinical studies inclusive of research designs across the spectrum of the National Institutes of Health definition of clinical research. The sources of metadata inform categorization in terms of metadata describing the origin of a data value, the definition of a data value, and operations to which the data value was subjected. The latter is further categorized into information about changes to a data value, movement of a data value, retrieval of a data value, and data quality checks, constraints or assessments to which the data value was subjected. The implications of tracking and managing data value-level metadata are explored.

  4. Imaging technique for detection of internal defects of pickling cucumbers

    Science.gov (United States)

    Pickling cucumbers are susceptible to damage during harvest and postharvest handling and processing. While it is easier to detect external defects, it is difficult to detect internal defects such as bruises and hollow or split cucumbers. Hyperspectral imaging technique under transmittance mode was i...

  5. Detection of defect in pickling cucumbers using hyperspectral imaging

    Science.gov (United States)

    Pickling cucumbers are susceptible to damage due to adverse growth condition, improper harvest timing, and inappropriate harvesting and postharvest handling operations. There are typically five to 10 percentages of harvested pickling cucumbers that are not suitable for pickling and hence should be r...

  6. Hyperspectral Imaging for Defect Detection of Pickling Cucumber

    Science.gov (United States)

    This book chapter reviews the recent progress on hyperspectral imaging technology for defect inspection of pickling cucumbers. The chapter first describes near-infrared hyperspectral reflectance imaging technique for the detection of bruises on pickling cucumbers. The technique showed good detection...

  7. USDA, ARS beit alpha cucumber inbred backcross line population

    Science.gov (United States)

    A series of Beit Alpha cucumber (Cucumis sativus L.) market type inbred backcross were released in January 2010 by the Agricultural Research Service, United States Department of Agriculture. The IBL were made available to U.S. cucumber breeders to supply a source from which they may develop Beit Al...

  8. Biosynthesis, regulation, and domestication of bitterness in cucumber

    NARCIS (Netherlands)

    Shang, Y.; Ma, Y.; Bouwmeester, H.J.

    2014-01-01

    Cucurbitacins are triterpenoids that confer a bitter taste in cucurbits such as cucumber, melon, watermelon, squash, and pumpkin. These compounds discourage most pests on the plant and have also been shown to have antitumor properties. With genomics and biochemistry, we identified nine cucumber gene

  9. Effect of Heavy Metal Pollution on Cucumber POD Isoenzyme

    Institute of Scientific and Technical Information of China (English)

    2003-01-01

    The Experiment was carried out to study heavy metal pollution effect on cucumber POD isozyme in our experiment.The results showed that:the activities of POD in cucumber seeds increased in low concentration treatment,and decreased in high concentration treatment after being treated with heavy metal.The critical band patterns of POD isoenzyme was changed by heavy metal pollution.

  10. Bioactive compounds of sea cucumbers and their therapeutic effects

    Science.gov (United States)

    Shi, Shujuan; Feng, Wenjing; Hu, Song; Liang, Shixiu; An, Nina; Mao, Yongjun

    2016-05-01

    Sea cucumbers belong to the Class Holothuroidea of marine invertebrates. They are commercially valuable and prized as a food and folk medicine in Asia. Nutritionally, sea cucumbers have an impressive profile of valuable nutrients such as vitamins, minerals and amino acids. A number of unique biological and pharmacological activities/properties, including anticancer, anticoagulant/antithrombotic, antimicrobial, antioxidant, antihyperlipidemic, antihyperglycemic, anti-inflammatory, antihypertension and radioprotective, have been ascribed to various compounds isolated from sea cucumbers. The therapeutic properties and medicinal benefits of sea cucumbers can be linked to the presence of a wide array of bioactives, especially triterpene glycosides, acid mucopolysaccharide, sphingoid bases, glycolipids, fucosylated chondroitin sulfate, polysaccharides, phospholipids, cerebrosides, phosphatidylcholines, and other extracts and hydrolysates. This review highlights the valuable bioactive components as well as the multiple therapeutic properties of sea cucumbers with a view to exploring their potential uses as functional foods and a natural source of new multifunctional drugs.

  11. Enantioselective separation and transformation of metalaxyl and its major metabolite metalaxyl acid in tomato and cucumber.

    Science.gov (United States)

    Li, Yuanbo; Dong, Fengshou; Liu, Xingang; Xu, Jun; Chen, Xiu; Han, Yongtao; Cheng, Youpu; Jian, Qiu; Zheng, Yongquan

    2013-11-01

    Many studies have shown the enantioselective transformation of metalaxyl in soil and animals, but little is known about the enantioselective biotransformation of metalaxyl in plants. In this study, a sensitive and convenient chiral liquid chromatography-tandem mass spectrometry method was developed for simultaneous measurement of the enantiomers of metalaxyl and its major metabolite, metalaxyl acid, in tomato and cucumber. Separation was by reversed-phase chromatography on a Chiralcel OD-RH column under isocratic conditions using acetonitrile-water (60/40, v/v) as mobile phase. The proposed method was successfully applied to investigate the possible enantioselective transformation of metalaxyl as well as the formation of metalaxyl acid in tomato and cucumber. In both vegetables, the (-)-R-enantiomer was preferentially degraded, resulting in relative enrichment of the (+)-S-enantiomer. Furthermore, formation of the metalaxyl acid enantiomers was also shown to be enantioselective, with the R-metalaxyl acid formed at a faster rate. This is the first evidence of enantioselective transformation of metalaxyl in vegetables, and the results should be considered in future environmental risk and food safety evaluations. Copyright © 2013 Elsevier Ltd. All rights reserved.

  12. Characteristics important for organic breeding of vegetable crops

    Directory of Open Access Journals (Sweden)

    Zdravković Jasmina

    2010-01-01

    Full Text Available The remarkable development and application of new genetic The Institute for Vegetable Crops possesses a rich germplasm collection of vegetables, utilized as gene resource for breeding specific traits. Onion and garlic breeding programs are based on chemical composition improvement. There are programs for identification and use of genotypes characterized by high tolerance to economically important diseases. Special attention is paid to breeding cucumber and tomato lines tolerant to late blight. As a result, late blight tolerant pickling cucumber line, as well as late blight tolerant tomato lines and hybrids are realized. Research on bean drought stress tolerance is initiated. Lettuce breeding program including research on spontaneous flora is started and interspecies hybrids were observed as possible genetic variability source. It is important to have access to a broad range of vegetable genotypes in order to meet the needs of organic agriculture production. Appreciating the concept of sustainable agriculture, it is important to introduce organic agriculture programs in breeding institutions.

  13. Role of cucurbitacin C in resistance to spider mite (Tetranychus urticae) in cucumber (Cucumber sativus L.)

    NARCIS (Netherlands)

    Balkema-Boomstra, A.G.; Zijlstra, S.; Verstappen, F.W.A.; Inggamer, H.; Mercke, P.

    2003-01-01

    Cucurbitacins are bitter triterpenoid compounds that are toxic to most organisms and occur widely in wild and cultivated Cucurbitaceae. The only cucurbitacin identified in Cucumis sativus is cucurbitacin C. The bitter taste of cucumber has been correlated with resistance to the spider mite

  14. Testing Metadata Existence of Web Map Services

    Directory of Open Access Journals (Sweden)

    Jan Růžička

    2011-05-01

    Full Text Available For a general user is quite common to use data sources available on WWW. Almost all GIS software allow to use data sources available via Web Map Service (ISO/OGC standard interface. The opportunity to use different sources and combine them brings a lot of problems that were discussed many times on conferences or journal papers. One of the problem is based on non existence of metadata for published sources. The question was: were the discussions effective? The article is partly based on comparison of situation for metadata between years 2007 and 2010. Second part of the article is focused only on 2010 year situation. The paper is created in a context of research of intelligent map systems, that can be used for an automatic or a semi-automatic map creation or a map evaluation.

  15. PIMMS tools for capturing metadata about simulations

    Science.gov (United States)

    Pascoe, Charlotte; Devine, Gerard; Tourte, Gregory; Pascoe, Stephen; Lawrence, Bryan; Barjat, Hannah

    2013-04-01

    PIMMS (Portable Infrastructure for the Metafor Metadata System) provides a method for consistent and comprehensive documentation of modelling activities that enables the sharing of simulation data and model configuration information. The aim of PIMMS is to package the metadata infrastructure developed by Metafor for CMIP5 so that it can be used by climate modelling groups in UK Universities. PIMMS tools capture information about simulations from the design of experiments to the implementation of experiments via simulations that run models. PIMMS uses the Metafor methodology which consists of a Common Information Model (CIM), Controlled Vocabularies (CV) and software tools. PIMMS software tools provide for the creation and consumption of CIM content via a web services infrastructure and portal developed by the ES-DOC community. PIMMS metadata integrates with the ESGF data infrastructure via the mapping of vocabularies onto ESGF facets. There are three paradigms of PIMMS metadata collection: Model Intercomparision Projects (MIPs) where a standard set of questions is asked of all models which perform standard sets of experiments. Disciplinary level metadata collection where a standard set of questions is asked of all models but experiments are specified by users. Bespoke metadata creation where the users define questions about both models and experiments. Examples will be shown of how PIMMS has been configured to suit each of these three paradigms. In each case PIMMS allows users to provide additional metadata beyond that which is asked for in an initial deployment. The primary target for PIMMS is the UK climate modelling community where it is common practice to reuse model configurations from other researchers. This culture of collaboration exists in part because climate models are very complex with many variables that can be modified. Therefore it has become common practice to begin a series of experiments by using another climate model configuration as a starting

  16. Metadata Analysis at the Command-Line

    Directory of Open Access Journals (Sweden)

    Mark Phillips

    2013-01-01

    Full Text Available Over the past few years the University of North Texas Libraries' Digital Projects Unit (DPU has developed a set of metadata analysis tools, processes, and methodologies aimed at helping to focus limited quality control resources on the areas of the collection where they might have the most benefit. The key to this work lies in its simplicity: records harvested from OAI-PMH-enabled digital repositories are transformed into a format that makes them easily parsable using traditional Unix/Linux-based command-line tools. This article describes the overall methodology, introduces two simple open-source tools developed to help with the aforementioned harvesting and breaking, and provides example commands to demonstrate some common metadata analysis requests. All software tools described in the article are available with an open-source license via the author's GitHub account.

  17. GraphMeta: Managing HPC Rich Metadata in Graphs

    Energy Technology Data Exchange (ETDEWEB)

    Dai, Dong; Chen, Yong; Carns, Philip; Jenkins, John; Zhang, Wei; Ross, Robert

    2016-01-01

    High-performance computing (HPC) systems face increasingly critical metadata management challenges, especially in the approaching exascale era. These challenges arise not only from exploding metadata volumes, but also from increasingly diverse metadata, which contains data provenance and arbitrary user-defined attributes in addition to traditional POSIX metadata. This ‘rich’ metadata is becoming critical to supporting advanced data management functionality such as data auditing and validation. In our prior work, we identified a graph-based model as a promising solution to uniformly manage HPC rich metadata due to its flexibility and generality. However, at the same time, graph-based HPC rich metadata anagement also introduces significant challenges to the underlying infrastructure. In this study, we first identify the challenges on the underlying infrastructure to support scalable, high-performance rich metadata management. Based on that, we introduce GraphMeta, a graphbased engine designed for this use case. It achieves performance scalability by introducing a new graph partitioning algorithm and a write-optimal storage engine. We evaluate GraphMeta under both synthetic and real HPC metadata workloads, compare it with other approaches, and demonstrate its advantages in terms of efficiency and usability for rich metadata management in HPC systems.

  18. Mdmap: A Tool for Metadata Collection and Matching

    Directory of Open Access Journals (Sweden)

    Rico Simke

    2014-10-01

    Full Text Available This paper describes a front-end for the semi-automatic collection, matching, and generation of bibliographic metadata obtained from different sources for use within a digitization architecture. The Library of a Billion Words project is building an infrastructure for digitizing text that requires high-quality bibliographic metadata, but currently only sparse metadata from digitized editions is available. The project’s approach is to collect metadata for each digitized item from as many sources as possible. An expert user can then use an intuitive front-end tool to choose matching metadata. The collected metadata are centrally displayed in an interactive grid view. The user can choose which metadata they want to assign to a certain edition, and export these data as MARCXML. This paper presents a new approach to bibliographic work and metadata correction. We try to achieve a high quality of the metadata by generating a large amount of metadata to choose from, as well as by giving librarians an intuitive tool to manage their data.

  19. Evaluating non-relational storage technology for HEP metadata and meta-data catalog

    Science.gov (United States)

    Grigorieva, M. A.; Golosova, M. V.; Gubin, M. Y.; Klimentov, A. A.; Osipova, V. V.; Ryabinkin, E. A.

    2016-10-01

    Large-scale scientific experiments produce vast volumes of data. These data are stored, processed and analyzed in a distributed computing environment. The life cycle of experiment is managed by specialized software like Distributed Data Management and Workload Management Systems. In order to be interpreted and mined, experimental data must be accompanied by auxiliary metadata, which are recorded at each data processing step. Metadata describes scientific data and represent scientific objects or results of scientific experiments, allowing them to be shared by various applications, to be recorded in databases or published via Web. Processing and analysis of constantly growing volume of auxiliary metadata is a challenging task, not simpler than the management and processing of experimental data itself. Furthermore, metadata sources are often loosely coupled and potentially may lead to an end-user inconsistency in combined information queries. To aggregate and synthesize a range of primary metadata sources, and enhance them with flexible schema-less addition of aggregated data, we are developing the Data Knowledge Base architecture serving as the intelligence behind GUIs and APIs.

  20. HIS Central and the Hydrologic Metadata Catalog

    Science.gov (United States)

    Whitenack, T.; Zaslavsky, I.; Valentine, D. W.

    2008-12-01

    The CUAHSI Hydrologic Information System project maintains a comprehensive workflow for publishing hydrologic observations data and registering them to the common Hydrologic Metadata Catalog. Once the data are loaded into a database instance conformant with the CUAHSI HIS Observations Data Model (ODM), the user configures ODM web service template to point to the new database. After this, the hydrologic data become available via the standard CUAHSI HIS web service interface, that includes both data discovery (GetSites, GetVariables, GetSiteInfo, GetVariableInfo) and data retrieval (GetValues) methods. The observations data then can be further exposed via the global semantics-based search engine called Hydroseek. To register the published observations networks to the global search engine, users can now use the HIS Central application (new in HIS 1.1). With this online application, the WaterML-compliant web services can be submitted to the online catalog of data services, along with network metadata and a desired network symbology. Registering services to the HIS Central application triggers a harvester which uses the services to retrieve additional network metadata from the underlying ODM (information about stations, variables, and periods of record). The next step in HIS Central application is mapping variable names from the newly registered network, to the terms used in the global search ontology. Once these steps are completed, the new observations network is added to the map and becomes available for searching and querying. The number of observations network registered to the Hydrologic Metadata Catalog at SDSC is constantly growing. At the time of submission, the catalog contains 51 registered networks, with estimated 1.7 million stations.

  1. Metadata Management System for Healthcare Information Systems

    OpenAIRE

    Patil, Ketan Shripat

    2011-01-01

    The Utah Department of Health (UDOH) uses multiple and diverse healthcare information systems for managing, maintaining, and sharing the health information. To keep track of the important details about these information systems such as the operational details, data semantics, data exchange standards, and personnel responsible for maintaining and managing it is a monumental task, with several limitations. This report describes the design and implementation of the Metadata Management System (MD...

  2. Publishers and Libraries: Sharing Metadata Between Communities

    OpenAIRE

    2014-01-01

    A project team dubbed the Author Names Project has been working on an ambitious effort that aims to have a major impact on how libraries and publishers exchange data in support of discovery of new authors and their scholarly and creative content. The project team has been developing a proof-of-concept system to enable publishers to exchange Author Names/Identity metadata with libraries. This web application, which we are calling OAQ (Online Author Questionnaire), is open source and will utili...

  3. Ontology-Based Search of Genomic Metadata.

    Science.gov (United States)

    Fernandez, Javier D; Lenzerini, Maurizio; Masseroli, Marco; Venco, Francesco; Ceri, Stefano

    2016-01-01

    The Encyclopedia of DNA Elements (ENCODE) is a huge and still expanding public repository of more than 4,000 experiments and 25,000 data files, assembled by a large international consortium since 2007; unknown biological knowledge can be extracted from these huge and largely unexplored data, leading to data-driven genomic, transcriptomic, and epigenomic discoveries. Yet, search of relevant datasets for knowledge discovery is limitedly supported: metadata describing ENCODE datasets are quite simple and incomplete, and not described by a coherent underlying ontology. Here, we show how to overcome this limitation, by adopting an ENCODE metadata searching approach which uses high-quality ontological knowledge and state-of-the-art indexing technologies. Specifically, we developed S.O.S. GeM (http://www.bioinformatics.deib.polimi.it/SOSGeM/), a system supporting effective semantic search and retrieval of ENCODE datasets. First, we constructed a Semantic Knowledge Base by starting with concepts extracted from ENCODE metadata, matched to and expanded on biomedical ontologies integrated in the well-established Unified Medical Language System. We prove that this inference method is sound and complete. Then, we leveraged the Semantic Knowledge Base to semantically search ENCODE data from arbitrary biologists' queries. This allows correctly finding more datasets than those extracted by a purely syntactic search, as supported by the other available systems. We empirically show the relevance of found datasets to the biologists' queries.

  4. Pu`ukohola Heiau National Historic Site Vegetation Mapping Project - Field Plots, Observation and Accuracy Assessment Points

    Data.gov (United States)

    National Park Service, Department of the Interior — This metadata is for the 2008 vegetation (classification) field plots (spatial database) and 2010 accuracy assessment points (spatial database) created from the...

  5. Cellular antioxidant activity of common vegetables.

    Science.gov (United States)

    Song, Wei; Derito, Christopher M; Liu, M Keshu; He, Xiangjiu; Dong, Mei; Liu, Rui Hai

    2010-06-01

    The measurement of antioxidant activity using biologically relevant assays is important to screen fruits, vegetables, natural products, and dietary supplements for potential health benefits. The cellular antioxidant activity (CAA) assay quantifies antioxidant activity using a cell culture model and was developed to meet the need for a more biologically representative method than the popular chemistry antioxidant capacity measures. The objective of the study was to determine the CAA, total phenolic contents, and oxygen radical absorbance capacity (ORAC) values of 27 vegetables commonly consumed in the United States. Beets, broccoli, and red pepper had the highest CAA values, whereas cucumber had the lowest. CAA values were significantly correlated to total phenolic content. Potatoes were found to be the largest contributors of vegetable phenolics and CAA to the American diet. Increased fruit and vegetable consumption is an effective strategy to increase antioxidant intake and decrease oxidative stress and may lead to reduced risk of developing chronic diseases, such as cancer and cardiovascular disease.

  6. Pure Culture Fermentation of Brined Cucumbers.

    Science.gov (United States)

    Etchells, J L; Costilow, R N; Anderson, T E; Bell, T A

    1964-11-01

    The relative abilities of Pediococcus cerevisiae, Lactobacillus plantarum, L. brevis, and several other species of lactic acid bacteria to grow and produce acid in brined cucumbers were evaluated in pure culture fermentations. Such fermentations were made possibly by the use of two techniques, gamma radiation (0.83 to 1.00 Mrad) and hot-water blanching (66 to 80 C for 5 min), designed first to rid the cucumbers of naturally occurring, interfering, and competitive microbial groups prior to brining, followed by inoculation with the desired lactic acid bacteria. Of the nine species tested, strains of the three common to cucumber fermentations, P. cerevisiae, L. plantarum, and L. brevis, grew to the highest populations, and produced the highest levels of brine acidity and the lowest pH values in fermentations at 5.4 to 5.6% NaCl by weight; also, their sequence of active development in fermentations, with the use of a three-species mixture for inoculation, was in the species order just named. This sequence of occurrence was similar to that estimated by others for natural fermentations. The rates of growth and acid production in fermentations with a mixture of P. cerevisiae, L. plantarum, and L. brevis increased as the incubation temperature was increased from 21 to 27 to 32 C; however, the maximal populations and acidities attained were essentially the same for fermentations at each temperature. Further, these same three species were found to be the most salt tolerant of those tested; their upper limit for appreciable growth and measurable acid production was about 8% salt, whereas thermophilic species such as L. thermophilus, L. lactis, L. helveticus, L. fermenti, and L. delbrueckii exhibited a much lower salt tolerance, ranging from about 2.5 to 4.0%. However, certain strains of L. delbrueckii grew very rapidly in cucumbers brined at 2.5 to 3.0% salt, and produced sufficient acid in about 30 hr at 48 C to reduce the brine pH from above 7.0 to below 4.0. An inexpensive

  7. Rhizobacterial exopolysaccharides elicit induced resistance on cucumber.

    Science.gov (United States)

    Park, Kyungseok; Kloepper, Joseph W; Ryu, Choong-Min

    2008-06-01

    The role of exopolysaccharides (EPSs) from a plant growth-promoting rhizobacterium, Burkholderia gladioli IN26, on elicitation of induced systemic resistance was investigated. A purified EPS induced expression of PR- 1a::GUS on tobacco and elicited induced resistance against Colletotrichum orbiculare on cucumber. The maximum level of disease protection was noted when seeds were soaked in 200 ppm of the EPS. Our results indicate that EPS from specific rhizobacteria can elicit induced resistance and suggest that bacterial EPS might be a useful elicitor of resistance under field conditions.

  8. The role of metadata in managing large environmental science datasets. Proceedings

    Energy Technology Data Exchange (ETDEWEB)

    Melton, R.B.; DeVaney, D.M. [eds.] [Pacific Northwest Lab., Richland, WA (United States); French, J. C. [Univ. of Virginia, (United States)

    1995-06-01

    The purpose of this workshop was to bring together computer science researchers and environmental sciences data management practitioners to consider the role of metadata in managing large environmental sciences datasets. The objectives included: establishing a common definition of metadata; identifying categories of metadata; defining problems in managing metadata; and defining problems related to linking metadata with primary data.

  9. An Approach to Metadata Generation for Learning Objects

    Science.gov (United States)

    Menendez D., Victor; Zapata G., Alfredo; Vidal C., Christian; Segura N., Alejandra; Prieto M., Manuel

    Metadata describe instructional resources and define their nature and use. Metadata are required to guarantee reusability and interchange of instructional resources into e-Learning systems. However, fulfilment of large metadata attributes is a hard and complex task for almost all LO developers. As a consequence many mistakes are made. This can cause the impoverishment of data quality in indexing, searching and recovering process. We propose a methodology to build Learning Objects from digital resources. The first phase includes automatic preprocessing of resources using techniques from information retrieval. Initial metadata obtained in this first phase are then used to search similar LO to propose missed metadata. The second phase considers assisted activities that merge computer advice with human decisions. Suggestions are based on metadata of similar Learning Object using fuzzy logic theory.

  10. An emergent theory of digital library metadata enrich then filter

    CERN Document Server

    Stevens, Brett

    2015-01-01

    An Emergent Theory of Digital Library Metadata is a reaction to the current digital library landscape that is being challenged with growing online collections and changing user expectations. The theory provides the conceptual underpinnings for a new approach which moves away from expert defined standardised metadata to a user driven approach with users as metadata co-creators. Moving away from definitive, authoritative, metadata to a system that reflects the diversity of users’ terminologies, it changes the current focus on metadata simplicity and efficiency to one of metadata enriching, which is a continuous and evolving process of data linking. From predefined description to information conceptualised, contextualised and filtered at the point of delivery. By presenting this shift, this book provides a coherent structure in which future technological developments can be considered.

  11. A CONCEPTUAL METADATA FRAMEWORK FOR SPATIAL DATA WAREHOUSE

    Directory of Open Access Journals (Sweden)

    M.Laxmaiah

    2013-05-01

    Full Text Available Metadata represents the information about data to be stored in Data Warehouses. It is a mandatory element of Data Warehouse to build an efficient Data Warehouse. Metadata helps in data integration, lineage, data quality and populating transformed data into data warehouse. Spatial data warehouses are based on spatial data mostly collected from Geographical Information Systems (GIS and the transactional systems that are specific to an application or enterprise. Metadata design and deployment is the most critical phase in building of data warehouse where it is mandatory to bring the spatial information and data modeling together. In this paper, we present a holistic metadata framework that drives metadata creation for spatial data warehouse. Theoretically, the proposed metadata framework improves the efficiency of accessing of data in response to frequent queries on SDWs. In other words, the proposed framework decreases the response time of the query and accurate information is fetched from Data Warehouse including the spatial information

  12. Effect of optimal daily fertigation on migration of water and salt in soil, root growth and fruit yield of cucumber (Cucumis sativus L.) in solar-greenhouse.

    Science.gov (United States)

    Liang, Xinshu; Gao, Yinan; Zhang, Xiaoying; Tian, Yongqiang; Zhang, Zhenxian; Gao, Lihong

    2014-01-01

    Inappropriate and excessive irrigation and fertilization have led to the predominant decline of crop yields, and water and fertilizer use efficiency in intensive vegetable production systems in China. For many vegetables, fertigation can be applied daily according to the actual water and nutrient requirement of crops. A greenhouse study was therefore conducted to investigate the effect of daily fertigation on migration of water and salt in soil, and root growth and fruit yield of cucumber. The treatments included conventional interval fertigation, optimal interval fertigation and optimal daily fertigation. Generally, although soil under the treatment optimal interval fertigation received much lower fertilizers than soil under conventional interval fertigation, the treatment optimal interval fertigation did not statistically decrease the economic yield and fruit nutrition quality of cucumber when compare to conventional interval fertigation. In addition, the treatment optimal interval fertigation effectively avoided inorganic nitrogen accumulation in soil and significantly (Pgreenhouse.

  13. From Gutenberg to Berners-Lee: the Need for Metadata

    OpenAIRE

    Simons, Eduard

    2010-01-01

    Keynote at the 1st Workshop on CRIS, CERIF and Institutional Repositories.-- 23 slides Metadata allow us to describe and classify research information in a systematic way, and as such they are indispensable for searching and finding academic publications and other results of research. In order to make full use of the information discovery potential of the Internet, the 'formal' and 'content' metadata commonly used in repositories should be supplemented with the 'context' metadata as stored...

  14. A metadata-driven approach to data repository design.

    Science.gov (United States)

    Harvey, Matthew J; McLean, Andrew; Rzepa, Henry S

    2017-01-01

    The design and use of a metadata-driven data repository for research data management is described. Metadata is collected automatically during the submission process whenever possible and is registered with DataCite in accordance with their current metadata schema, in exchange for a persistent digital object identifier. Two examples of data preview are illustrated, including the demonstration of a method for integration with commercial software that confers rich domain-specific data analytics without introducing customisation into the repository itself.

  15. The genome of the cucumber, Cucumis sativus L

    DEFF Research Database (Denmark)

    Huang, Sanwen; Li, Ruiqiang; Zhang, Zhonghua

    2009-01-01

    ancestral chromosomes after divergence from Cucumis melo. The sequenced cucumber genome affords insight into traits such as its sex expression, disease resistance, biosynthesis of cucurbitacin and 'fresh green' odor. We also identify 686 gene clusters related to phloem function. The cucumber genome provides......Cucumber is an economically important crop as well as a model system for sex determination studies and plant vascular biology. Here we report the draft genome sequence of Cucumis sativus var. sativus L., assembled using a novel combination of traditional Sanger and next-generation Illumina GA...

  16. The entry of cucumber mosaic virus into cucumber xylem is facilitated by co-infection with zucchini yellow mosaic virus.

    Science.gov (United States)

    Mochizuki, Tomofumi; Nobuhara, Shinya; Nishimura, Miho; Ryang, Bo-Song; Naoe, Masaki; Matsumoto, Tadashi; Kosaka, Yoshitaka; Ohki, Satoshi T

    2016-10-01

    We investigated the synergistic effects of co-infection by zucchini yellow mosaic virus (ZYMV) and cucumber mosaic virus (CMV) on viral distribution in the vascular tissues of cucumber. Immunohistochemical observations indicated that ZYMV was present in both the phloem and xylem tissues. ZYMV-RNA was detected in both the xylem wash and guttation fluid of ZYMV-inoculated cucumber. Steam treatment at a stem internode indicated that ZYMV enters the xylem vessels and moves through them but does not cause systemic infection in the plant. CMV distribution in singly infected cucumbers was restricted to phloem tissue. By contrast, CMV was detected in the xylem tissue of cotyledons in plants co-infected with CMV and ZYMV. Although both ZYMV-RNA and CMV-RNA were detected in the xylem wash and upper internodes of steam-treated, co-infected cucumbers grown at 24 °C, neither virus was detected in the upper leaves using an ELISA assay. Genetically modified CMV harboring the ZYMV HC-Pro gene was distributed in the xylem and phloem tissues of singly inoculated cucumber cotyledons. These results indicate that the ZYMV HC-Pro gene facilitates CMV entry into the xylem vessels of co-infected cucumbers.

  17. Content Metadata Standards for Marine Science: A Case Study

    Science.gov (United States)

    Riall, Rebecca L.; Marincioni, Fausto; Lightsom, Frances L.

    2004-01-01

    The U.S. Geological Survey developed a content metadata standard to meet the demands of organizing electronic resources in the marine sciences for a broad, heterogeneous audience. These metadata standards are used by the Marine Realms Information Bank project, a Web-based public distributed library of marine science from academic institutions and government agencies. The development and deployment of this metadata standard serve as a model, complete with lessons about mistakes, for the creation of similarly specialized metadata standards for digital libraries.

  18. CMO: Cruise Metadata Organizer for JAMSTEC Research Cruises

    Science.gov (United States)

    Fukuda, K.; Saito, H.; Hanafusa, Y.; Vanroosebeke, A.; Kitayama, T.

    2011-12-01

    JAMSTEC's Data Research Center for Marine-Earth Sciences manages and distributes a wide variety of observational data and samples obtained from JAMSTEC research vessels and deep sea submersibles. Generally, metadata are essential to identify data and samples were obtained. In JAMSTEC, cruise metadata include cruise information such as cruise ID, name of vessel, research theme, and diving information such as dive number, name of submersible and position of diving point. They are submitted by chief scientists of research cruises in the Microsoft Excel° spreadsheet format, and registered into a data management database to confirm receipt of observational data files, cruise summaries, and cruise reports. The cruise metadata are also published via "JAMSTEC Data Site for Research Cruises" within two months after end of cruise. Furthermore, these metadata are distributed with observational data, images and samples via several data and sample distribution websites after a publication moratorium period. However, there are two operational issues in the metadata publishing process. One is that duplication efforts and asynchronous metadata across multiple distribution websites due to manual metadata entry into individual websites by administrators. The other is that differential data types or representation of metadata in each website. To solve those problems, we have developed a cruise metadata organizer (CMO) which allows cruise metadata to be connected from the data management database to several distribution websites. CMO is comprised of three components: an Extensible Markup Language (XML) database, an Enterprise Application Integration (EAI) software, and a web-based interface. The XML database is used because of its flexibility for any change of metadata. Daily differential uptake of metadata from the data management database to the XML database is automatically processed via the EAI software. Some metadata are entered into the XML database using the web

  19. Anticancer Activity of Sea Cucumber Triterpene Glycosides

    Directory of Open Access Journals (Sweden)

    Dmitry L. Aminin

    2015-03-01

    Full Text Available Triterpene glycosides are characteristic secondary metabolites of sea cucumbers (Holothurioidea, Echinodermata. They have hemolytic, cytotoxic, antifungal, and other biological activities caused by membranotropic action. These natural products suppress the proliferation of various human tumor cell lines in vitro and, more importantly, intraperitoneal administration in rodents of solutions of some sea cucumber triterpene glycosides significantly reduces both tumor burden and metastasis. The anticancer molecular mechanisms include the induction of tumor cell apoptosis through the activation of intracellular caspase cell death pathways, arrest of the cell cycle at S or G2/M phases, influence on nuclear factors, NF-κB, and up-down regulation of certain cellular receptors and enzymes participating in cancerogenesis, such as EGFR (epidermal growth factor receptor, Akt (protein kinase B, ERK (extracellular signal-regulated kinases, FAK (focal adhesion kinase, MMP-9 (matrix metalloproteinase-9 and others. Administration of some glycosides leads to a reduction of cancer cell adhesion, suppression of cell migration and tube formation in those cells, suppression of angiogenesis, inhibition of cell proliferation, colony formation and tumor invasion. As a result, marked growth inhibition of tumors occurs in vitro and in vivo. Some holothurian triterpene glycosides have the potential to be used as P-gp mediated MDR reversal agents in combined therapy with standard cytostatics.

  20. Cucumber disease diagnosis using multispectral images

    Science.gov (United States)

    Feng, Jie; Li, Hongning; Shi, Junsheng; Yang, Weiping; Liao, Ningfang

    2009-07-01

    In this paper, multispectral imaging technique for plant diseases diagnosis is presented. Firstly, multispectral imaging system is designed. This system utilizes 15 narrow-band filters, a panchromatic band, a monochrome CCD camera, and standard illumination observing environment. The spectral reflectance and color of 8 Macbeth color patches are reproduced between 400nm and 700nm in the process. In addition, spectral reflectance angle and color difference is obtained through measurements and analysis of color patches using spectrometer and multispectral imaging system. The result shows that 16 narrow-bands multispectral imaging system realizes good accuracy in spectral reflectance and color reproduction. Secondly, a horticultural plant, cucumber' familiar disease are the researching objects. 210 multispectral samples are obtained by multispectral and are classified by BP artificial neural network. The classification accuracies of Sphaerotheca fuliginea, Corynespora cassiicola, Pseudoperonospora cubensis are 100%. Trichothecium roseum and Cladosporium cucumerinum are 96.67% and 90.00%. It is confirmed that the multispectral imaging system realizes good accuracy in the cucumber diseases diagnosis.

  1. Effect of different levels of nickel in nutrient solution containing NH4NO3 on lipid peroxidation and activity of some antioxidant enzymes in cucumber leaves

    Directory of Open Access Journals (Sweden)

    A. Sanaei Ostovar

    2013-03-01

    Full Text Available Nickel (Ni is necessary for plants at low concentrations; but excess Ni has toxic effects on plant growth. In this research, the effects of different Ni levels (0, 50, 100 and 200 µM from NiCl2 on leaf antioxidative response of two cucumber cultivars (Cucumis sativus L. cvs. Super Dominus and Negin supplied with NH4NO3 as nitrogen source in nutrient solution was investigated. The results showed that by increasing Ni concentration in the nutrient solution and growth period, Ni concentration in the leaves of both cucumber cultivars was increased. This increase was greater at the vegetative growth stage compared with the reproductive stage. Higher levels of malonedialhdeyde (MDA were also produced at the vegetative stage with respect to the reproductive stage. Application of 50 µM Ni significantly reduced MDA concentration, produced from lipid peroxidation, in comparison with the Ni-free control treatment. The effect of Ni on catalase (CAT activity was dependent on the cucumber cultivar and concentration of this element in the growth medium. At the vegetative stage, Ni addition had no significant effect on activity of CAT in Super Dominus cultivar, while significantly reduced leaf activity of CAT in Negin cultivar. At the reproductive stage, Ni addition reduced activity of CAT in comparison with Ni-free treatment, regardless of the cucumber cultivar. Results showed that at the vegetative stage, application of 50 µM Ni to the growth medium resulted in lower activity of guaiacol peroxidase (GPX in the leaves of both cucumber cultivars. By increasing the Ni level to 100 and 200 µM, the activity of this enzyme was increased. At the reproductive stage, activity of the ascorbate peroxidase (APX in the leaves was dependent on the cultivar and concentration of this element in the medium. According to the results obtained from the present study, in general, the effect of Ni on activity of antioxidant enzymes in cucumber leaves varies with plant cultivar

  2. Informing and Evaluating a Metadata Initiative: Usability and Metadata Studies in Minnesota's "Foundations" Project.

    Science.gov (United States)

    Quam, Eileen

    2001-01-01

    Explains Minnesota's Foundations Project, a multiagency collaboration to improve access to environmental and natural resources information. Discusses the use of the Dublin core metadata standard for Web resources and describes three studies that included needs assessment, Bridges Web site user interface, and usability of controlled vocabulary in…

  3. A standard for measuring metadata quality in spectral libraries

    Science.gov (United States)

    Rasaiah, B.; Jones, S. D.; Bellman, C.

    2013-12-01

    A standard for measuring metadata quality in spectral libraries Barbara Rasaiah, Simon Jones, Chris Bellman RMIT University Melbourne, Australia barbara.rasaiah@rmit.edu.au, simon.jones@rmit.edu.au, chris.bellman@rmit.edu.au ABSTRACT There is an urgent need within the international remote sensing community to establish a metadata standard for field spectroscopy that ensures high quality, interoperable metadata sets that can be archived and shared efficiently within Earth observation data sharing systems. Metadata are an important component in the cataloguing and analysis of in situ spectroscopy datasets because of their central role in identifying and quantifying the quality and reliability of spectral data and the products derived from them. This paper presents approaches to measuring metadata completeness and quality in spectral libraries to determine reliability, interoperability, and re-useability of a dataset. Explored are quality parameters that meet the unique requirements of in situ spectroscopy datasets, across many campaigns. Examined are the challenges presented by ensuring that data creators, owners, and data users ensure a high level of data integrity throughout the lifecycle of a dataset. Issues such as field measurement methods, instrument calibration, and data representativeness are investigated. The proposed metadata standard incorporates expert recommendations that include metadata protocols critical to all campaigns, and those that are restricted to campaigns for specific target measurements. The implication of semantics and syntax for a robust and flexible metadata standard are also considered. Approaches towards an operational and logistically viable implementation of a quality standard are discussed. This paper also proposes a way forward for adapting and enhancing current geospatial metadata standards to the unique requirements of field spectroscopy metadata quality. [0430] BIOGEOSCIENCES / Computational methods and data processing [0480

  4. Phase Characterization of Cucumber Growth: A Chemical Gel Model

    Directory of Open Access Journals (Sweden)

    Bo Li

    2016-01-01

    Full Text Available Cucumber grows with complex phenomena by changing its volume and shape, which is not fully investigated and challenges agriculture and food safety industry. In order to understand the mechanism and to characterize the growth process, the cucumber is modeled as a hydrogel in swelling and its development is studied in both preharvest and postharvest stages. Based on thermodynamics, constitutive equations, incorporating biological quantities, are established. The growth behavior of cucumber follows the classic theory of continuous or discontinuous phase transition. The mechanism of bulged tail in cucumber is interpreted by phase coexistence and characterized by critical conditions. Conclusions are given for advances in food engineering and novel fabrication techniques in mechanical biology.

  5. Genetic Analysis on Bent Characters of Cucumber Fruit

    Institute of Scientific and Technical Information of China (English)

    ZHANG Peng; QIN Zhiwei; WANG Lili; ZHOU Xiuyan

    2011-01-01

    Bent varieties and straight varieties were made as parents for the genetic analysis to investigate cucumber bending genetic mechanism. The results showed that the bent characters of the cucumber fruit (BCCF) were quantitative inheritance controlled by multiple genes and major genes. The additive effect played the main role and the dominance effect played the lesser role. Compared with the additive environmental variance, the dominant-environmental variance was more important and the cucumber fruit was more easily affected by the additive effect. The broad heritability and the narrow heritability of BCCF were both higher. The varieties of D0455 and D07299 could be used as parents which were benefit for improving the straight characters of the cucumber fruit

  6. THE EFFECT OF CUCUMBER ( ) EXTRACT ON ACID INDUCED ...

    African Journals Online (AJOL)

    LIVINGSTON

    ... of corneal acid burn. Cucumber extract, corneal acid burn, guinea pigs, alpha hydroxyl acids, beta hydroxyl ..... cholesterol arteriosclerosis in rabbits. Circulation.12:696 ... production in human skin fibroblast cultures in vitro. Dermatol. Surg.

  7. Metadata: A user`s view

    Energy Technology Data Exchange (ETDEWEB)

    Bretherton, F.P. [Univ. of Wisconsin, Madison, WI (United States); Singley, P.T. [Oak Ridge National Lab., TN (United States)

    1994-12-31

    An analysis is presented of the uses of metadata from four aspects of database operations: (1) search, query, retrieval, (2) ingest, quality control, processing, (3) application to application transfer; (4) storage, archive. Typical degrees of database functionality ranging from simple file retrieval to interdisciplinary global query with metadatabase-user dialog and involving many distributed autonomous databases, are ranked in approximate order of increasing sophistication of the required knowledge representation. An architecture is outlined for implementing such functionality in many different disciplinary domains utilizing a variety of off the shelf database management subsystems and processor software, each specialized to a different abstract data model.

  8. Metadata For Identity Management of Population Registers

    Directory of Open Access Journals (Sweden)

    Olivier Glassey

    2011-04-01

    Full Text Available A population register is an inventory of residents within a country, with their characteristics (date of birth, sex, marital status, etc. and other socio-economic data, such as occupation or education. However, data on population are also stored in numerous other public registers such as tax, land, building and housing, military, foreigners, vehicles, etc. Altogether they contain vast amounts of personal and sensitive information. Access to public information is granted by law in many countries, but this transparency is generally subject to tensions with data protection laws. This paper proposes a framework to analyze data access (or protection requirements, as well as a model of metadata for data exchange.

  9. Information resource description creating and managing metadata

    CERN Document Server

    Hider, Philip

    2012-01-01

    An overview of the field of information organization that examines resource description as both a product and process of the contemporary digital environment.This timely book employs the unifying mechanism of the semantic web and the resource description framework to integrate the various traditions and practices of information and knowledge organization. Uniquely, it covers both the domain-specific traditions and practices and the practices of the ?metadata movement' through a single lens ? that of resource description in the broadest, semantic web sense.This approach more readily accommodate

  10. Radiation processing to ensure safety of minimally processed carrot (Daucus carota) and cucumber (Cucumis sativus): optimization of dose for the elimination of Salmonella Typhimurium and Listeria monocytogenes.

    Science.gov (United States)

    Dhokane, V S; Hajare, S; Shashidhar, R; Sharma, A; Bandekar, J R

    2006-02-01

    Minimally processed vegetables are in demand, because they offer convenience to consumers. However, these products are often unsafe because of possible contamination with pathogens, such as Salmonella, Escherichia coli O157:H7, and Shigella species. Therefore, this study was carried out to optimize the radiation dose necessary to ensure the safety of precut carrot and cucumber. Decimal reduction doses (D-values) of Salmonella Typhimurium MTCC 98 were ca. 0.164 kGy in carrot samples and 0.178 kGy in cucumber samples. D-values of Listeria monocytogenes were determined to be 0.312 and 0.345 kGy in carrot and cucumber samples, respectively. Studies of inoculated, packaged, minimally processed carrot and cucumber samples showed that treatment with a 1-kGy dose of gamma radiation eliminated up to 4 log CFU/g of Salmonella Typhimurium and 3 log CFU/g of L. monocytogenes. However, treatment with a 2-kGy dose was necessary to eliminate these pathogens by 5 log CFU/g. Storage studies showed that both Salmonella Typhimurium and L. monocytogenes were able to grow at 10 degrees C in inoculated control samples. Neither of these pathogens could be recovered from radiation-processed samples after storage for up to 8 days.

  11. Analysis of the systemic colonization of cucumber plants by Cucumber green mottle mosaic virus.

    Science.gov (United States)

    Moreno, I M; Thompson, J R; García-Arenal, F

    2004-03-01

    Systemic movement of Cucumber green mottle mosaic virus (CGMMV) in cucumber plants was shown to be from photoassimilate source to sink, thus indicating phloem transport. Nevertheless, CGMMV was not detected by immunocytochemical procedures in the intermediary cell-sieve element complex in inoculated cotyledons, where photoassimilate loading occurs. In stem internodes, CGMMV was first localized in the companion cells of the external phloem and subsequently in all tissues except the medulla, therefore suggesting leakage of the virus from, and reloading into, the transport phloem during systemic movement. In systemically infected sink leaves, CGMMV was simultaneously detected in the xylem and phloem. Interestingly, CGMMV accumulated to high levels in the differentiating tracheids of young leaves implying that the xylem could be involved in the systemic movement of CGMMV. This possibility was tested using plants in which cell death was induced in a portion of the stem by steam treatment. At 24 degrees C, steam treatment effectively prevented the systemic movement of CGMMV, even though viral RNA was detected in washes of the xylem above the steamed internode suggesting that xylem circulation occurred. At 29 degrees C, CGMMV systemically infected steam-treated cucumber plants, indicating that CGMMV can move systemically via the xylem. Xylem transport of CGMMV was, however, less efficient than phloem transport in terms of the time required for systemic infection and the percentage of plants infected.

  12. Sea Cucumber: New source of Protein for Human Consumption

    OpenAIRE

    Daniela Vaz Pratas

    2014-01-01

    Aquaculture, probably the fastest growing food-producing sector, now accounts for nearly 50 percent of the world's food fish consumed by humans, and this share is expected to increase further to meet future demand. Sea cucumbers are considered highly marketable product and this has resulted in an increasing overfishing of natural sea cucumber stocks. Nevertheless, these resources are almost unexploited in the Mediterranean region. Many species of holothurians have been recognized as an altern...

  13. Use of Spent Mushroom Substrate as Growing Media for Tomato and Cucumber Seedlings

    Institute of Scientific and Technical Information of China (English)

    ZHANG Run-Hua; DUAN Zeng-Qiang; LI Zhi-Guo

    2012-01-01

    The aim of this research was to evaluate weathered spent mushroom substrate (SMS),made from spent Flammulina velutipes mushroom substrate,as a growing medium for nursery seedlings.Two vegetable species,cucumber (Cucumis sativus L.cv.Jinchun No.2) and tomato (Solanum lycopersicum L.cv.Mandy),were grown in 8 media of SMS in various ratios with perlite or vermiculite.A mixed substrate of peat with perlite (1∶1; v∶v) was used as the control (CK).The experiment was arranged in a completely randomized design under greenhouse conditions.Prior to sowing,some physical and chemical properties of the growing media were determined.Results showed that all the mixtures had desirable physical and chemical properties for their use in nursery tomato and cucumber seedlings except for the T4 (SMS∶vermiculite =1∶1;v∶v) and the T8 (SMS∶perlite =2∶1; v∶v) mixtures.Compared with the CK,increased plant height,leaf area,fresh weight,dry weight and index of seedling quality were found in the T3 (SMS∶vermiculite =2∶1; v∶v) and T6 (SMS:perlite =4∶1; v∶v) growing media.SMS should be considered as an alternative for the widely used but expensive and resource-limited peat in greenhouse cultivation.

  14. Effects of Edible Chitosan Coating on Quality and Increasing Storage Life of Cucumber cv.

    Directory of Open Access Journals (Sweden)

    M. Ghasemi Tavallaiy

    2015-06-01

    Full Text Available Chitosan, is non-toxic, biodegradable and biocompatible material, which can be used as edible coatings to maintain quality and enhance postharvest life of fruits and vegetables. In this study, the effect of chitosan at 0, 0.5, 1 and 2% concentrations on storage life of cucumber cv. "Zomorod" was investigated. After treatment and keeping in an incubator at 12 °C and 90% relative humidity, the fruits were assessed in 5-days intervals to determine parameters such as firmness, weight loss, vitamin C, titratable acidity, soluble solids and chlorophyll content. Experiment was performed as a split-plot design in time in a completely randomized design with three replications. The results of the experiment showed that chitosan coating, had a significant effect on all traits except titrable acidity. The lowest weight loss and the highest firmness were recorded with 1% chitosan treatment which significantly differed from the control. It is appeared that chitosan coatings could be used to increase the storage life of cucumber fruit and to maintain its quality for a longer period.

  15. Colored polyethylene soil covers and grafting effects on cucumber flowering and yield

    Directory of Open Access Journals (Sweden)

    Fonseca Inês Cristina de Batista

    2003-01-01

    Full Text Available Cucumber (Cucumis sativus L. is one of the most cultivated vegetable crops in plastic greenhouses in Brazil because of the short cycle and its high economic value in off-season harvests. To better understand this management technique the effect of different colored polyethylene soil covers was evaluated in relation to flowering and yield of the hybrid cucumber 'Yoshinari' grafted or not on the hybrid squash 'Ikky'. The polyethylene cover colors were black, white on black and green plus a control without cover. Covered but not grafted crops had a more uniform flowering distribution. The number of flowers was greater for the white/black grafted treatment. All the polyethylene covers favored flowering for the non grafted plants. Grafting reduced flowering for the black or green polyethylene covers treatments. The fruit set increased with the use of polyethylene cover but was not influenced by grafting. The uniform distribution of flowering remained during fruiting only for grafted plants and soil covered with black or green polyethylene. Both polyethylene cover and grafting favored early harvesting. The 'Yoshinari'/'Ikky' graft caused taller plants but fruit were thicker and smaller and did not meet the commercial standard. The best quality fruit and highest yields were obtained in the black and white/black treatments, without grafting.

  16. Nitrogen accumulation profiles of selected grain and vegetable crops: A bibliography (1940-1992)

    Energy Technology Data Exchange (ETDEWEB)

    Meischen, S.J.; Byrd, K.R.

    1994-10-01

    A bibliography of nitrogen accumulation profile data for 25 vegetable and grain crops reported between 1940 and 1992 is presented. The selected crops are asparagus, broccoli, brussels sprouts, cabbage, carrots, cauliflower, celery, corn, cotton, cucumber, field bean, field pea, garlic, lettuce, onions, and peppers.

  17. Sea Cucumbers Metabolites as Potent Anti-Cancer Agents

    Directory of Open Access Journals (Sweden)

    Naveena B. Janakiram

    2015-05-01

    Full Text Available Sea cucumbers and their extracts have gained immense popularity and interest among researchers and nutritionists due to their nutritive value, potential health benefits, and use in the treatment of chronic inflammatory diseases. Many areas of the world use sea cucumbers in traditional foods and folk medicine. Though the actual components and their specific functions still remain to be investigated, most sea cucumber extracts are being studied for their anti-inflammatory functions, immunostimulatory properties, and for cancer prevention and treatment. There is large scope for the discovery of additional bioactive, valuable compounds from this natural source. Sea cucumber extracts contain unique components, such as modified triterpene glycosides, sulfated polysaccharides, glycosphingolipids, and esterified phospholipids. Frondanol A5, an isopropyl alcohol/water extract of the enzymatically hydrolyzed epithelia of the edible North Atlantic sea cucumber, Cucumaria frondosa, contains monosulfated triterpenoid glycoside Frondoside A, the disulfated glycoside Frondoside B, the trisulfated glycoside Frondoside C, 12-methyltetradecanoic acid, eicosapentaenoic acid, and fucosylated chondroitin sulfate. We have extensively studied the efficacy of this extract in preventing colon cancer in rodent models. In this review, we discuss the anti-inflammatory, immunostimulatory, and anti-tumor properties of sea cucumber extracts.

  18. Proteomic Analysis of Cucumber Defense Rresponses Induced by Propamocarb

    Institute of Scientific and Technical Information of China (English)

    WU Peng; QIN Zhi-wei; WU Tao; ZHOU Xiu-yan; XIN Ming; GUO Qian-qian

    2013-01-01

    Propamocarb is an agricultural chemical that has been widely used to protect cucumber plants from downy mildew. To understand the mechanisms of cucumber defense responses to propamocarb, we investigated the physiological and proteomic responses of the cucumber line D0351 with propamocarb application. We found that after treatment with propamocarb, the activities of detoxifying enzymes (glutathione reductase, GR; glutathione S-tramsferase, GST) and soluble sugar content of cucumber fruit were signiifcantly increased, but malonaldehyde (MDA) content was signiifcantly reduced. To identify components of propamocarb responsive signaling, we compared the high resolution two-dimensional gel electrophoresis (2-DE) protein proifles of control and propamocarb-treated fruits, and identiifed 18 differentially expressed (13 up-regulated and 5 down-regulated) proteins induced by propamocarb which were determined by matrix-assisted laser desorption/ionization time-of-lfight mass spectrometry (MALDI-TOF-MS). The majority of the proteins had functions related to detoxication, energy and transport, protein biosynthesis, regulating reactions and defending against stresses. A real-time quantitative reverse transcriptional-polymerase chain reaction (qRT-PCR) was used to compare transcript and protein accumulation patterns for 18 candidate proteins, and the expression of 14 was consistent at both transcript and protein levels. The responses of cucumber proteome to propamocarb seemed complex; the identified proteins may play an important role in regulating adaptation activities following exposure to propamocarb. Data presented herein may shed light on understanding cucumber fruit defense responses under propamocarb treatment.

  19. Sea Cucumbers Metabolites as Potent Anti-Cancer Agents.

    Science.gov (United States)

    Janakiram, Naveena B; Mohammed, Altaf; Rao, Chinthalapally V

    2015-05-12

    Sea cucumbers and their extracts have gained immense popularity and interest among researchers and nutritionists due to their nutritive value, potential health benefits, and use in the treatment of chronic inflammatory diseases. Many areas of the world use sea cucumbers in traditional foods and folk medicine. Though the actual components and their specific functions still remain to be investigated, most sea cucumber extracts are being studied for their anti-inflammatory functions, immunostimulatory properties, and for cancer prevention and treatment. There is large scope for the discovery of additional bioactive, valuable compounds from this natural source. Sea cucumber extracts contain unique components, such as modified triterpene glycosides, sulfated polysaccharides, glycosphingolipids, and esterified phospholipids. Frondanol A5, an isopropyl alcohol/water extract of the enzymatically hydrolyzed epithelia of the edible North Atlantic sea cucumber, Cucumaria frondosa, contains monosulfated triterpenoid glycoside Frondoside A, the disulfated glycoside Frondoside B, the trisulfated glycoside Frondoside C, 12-methyltetradecanoic acid, eicosapentaenoic acid, and fucosylated chondroitin sulfate. We have extensively studied the efficacy of this extract in preventing colon cancer in rodent models. In this review, we discuss the anti-inflammatory, immunostimulatory, and anti-tumor properties of sea cucumber extracts.

  20. Forensic devices for activism: Metadata tracking and public proof

    NARCIS (Netherlands)

    van der Velden, L.

    2015-01-01

    The central topic of this paper is a mobile phone application, ‘InformaCam’, which turns metadata from a surveillance risk into a method for the production of public proof. InformaCam allows one to manage and delete metadata from images and videos in order to diminish surveillance risks related to o

  1. Metadata as a means for correspondence on digital media

    NARCIS (Netherlands)

    Stouffs, R.; Kooistra, J.; Tuncer, B.

    2004-01-01

    Metadata derive their action from their association to data and from the relationship they maintain with this data. An interpretation of this action is that the metadata lays claim to the data collection to which it is associated, where the claim is successful if the data collection gains quality as

  2. Learning Object Metadata in a Web-Based Learning Environment

    NARCIS (Netherlands)

    Avgeriou, Paris; Koutoumanos, Anastasios; Retalis, Symeon; Papaspyrou, Nikolaos

    2000-01-01

    The plethora and variance of learning resources embedded in modern web-based learning environments require a mechanism to enable their structured administration. This goal can be achieved by defining metadata on them and constructing a system that manages the metadata in the context of the learning

  3. Shared Geospatial Metadata Repository for Ontario University Libraries: Collaborative Approaches

    Science.gov (United States)

    Forward, Erin; Leahey, Amber; Trimble, Leanne

    2015-01-01

    Successfully providing access to special collections of digital geospatial data in academic libraries relies upon complete and accurate metadata. Creating and maintaining metadata using specialized standards is a formidable challenge for libraries. The Ontario Council of University Libraries' Scholars GeoPortal project, which created a shared…

  4. SM4AM: A Semantic Metamodel for Analytical Metadata

    DEFF Research Database (Denmark)

    Varga, Jovan; Romero, Oscar; Pedersen, Torben Bach

    2014-01-01

    . We present SM4AM, a Semantic Metamodel for Analytical Metadata created as an RDF formalization of the Analytical Metadata artifacts needed for user assistance exploitation purposes in next generation BI systems. We consider the Linked Data initiative and its relevance for user assistance...

  5. Metadata in the Collaboratory for Multi-Scale Chemical Science

    Energy Technology Data Exchange (ETDEWEB)

    Pancerella, Carmen M.; Hewson, John; Koegler, Wendy S.; Leahy, David; Lee, Michael; Rahn, Larry; Yang, Christine; Myers, James D.; Didier, Brett T.; McCoy, Renata; Schuchardt, Karen L.; Stephan, Eric G.; Windus, Theresa L.; Amin, Kaizer; Bittner, Sandra; Lansing, Carina S.; Minkoff, Michael; Nijsure, Sandeep; von Laszewski, Gregor; Pinzon, Reinhardt; Ruscic, Branko; Wagner, Albert F.; Wang, Baoshan; Pitz, William; Ho, Yen-Ling; Montoya, David W.; Xu, Lili; Allison, Thomas C.; Green, William H.; Frenklach, Michael

    2003-10-02

    The goal of the Collaboratory for the Multi-scale Chemical Sciences (CMCS) [1] is to develop an informatics-based approach to synthesizing multi-scale chemistry information to create knowledge in the chemical sciences. CMCS is using a portal and metadata-aware content store as a base for building a system to support inter-domain knowledge exchange in chemical science. Key aspects of the system include configurable metadata extraction and translation, a core schema for scientific pedigree, and a suite of tools for managing data and metadata and visualizing pedigree relationships between data entries. CMCS metadata is represented using Dublin Core with metadata extensions that are useful to both the chemical science community and the science community in general. CMCS is working with several chemistry groups who are using the system to collaboratively assemble and analyze existing data to derive new chemical knowledge. In this paper we discuss the project’s metadata-related requirements, the relevant software infrastructure, core metadata schema, and tools that use the metadata to enhance science

  6. Metadata Laws, Journalism and Resistance in Australia

    Directory of Open Access Journals (Sweden)

    Benedetta Brevini

    2017-03-01

    Full Text Available The intelligence leaks from Edward Snowden in 2013 unveiled the sophistication and extent of data collection by the United States’ National Security Agency and major global digital firms prompting domestic and international debates about the balance between security and privacy, openness and enclosure, accountability and secrecy. It is difficult not to see a clear connection with the Snowden leaks in the sharp acceleration of new national security legislations in Australia, a long term member of the Five Eyes Alliance. In October 2015, the Australian federal government passed controversial laws that require telecommunications companies to retain the metadata of their customers for a period of two years. The new acts pose serious threats for the profession of journalism as they enable government agencies to easily identify and pursue journalists’ sources. Bulk data collections of this type of information deter future whistleblowers from approaching journalists, making the performance of the latter’s democratic role a challenge. After situating this debate within the scholarly literature at the intersection between surveillance studies and communication studies, this article discusses the political context in which journalists are operating and working in Australia; assesses how metadata laws have affected journalism practices and addresses the possibility for resistance.

  7. Metadata Access Tool for Climate and Health

    Science.gov (United States)

    Trtanji, J.

    2012-12-01

    The need for health information resources to support climate change adaptation and mitigation decisions is growing, both in the United States and around the world, as the manifestations of climate change become more evident and widespread. In many instances, these information resources are not specific to a changing climate, but have either been developed or are highly relevant for addressing health issues related to existing climate variability and weather extremes. To help address the need for more integrated data, the Interagency Cross-Cutting Group on Climate Change and Human Health, a working group of the U.S. Global Change Research Program, has developed the Metadata Access Tool for Climate and Health (MATCH). MATCH is a gateway to relevant information that can be used to solve problems at the nexus of climate science and public health by facilitating research, enabling scientific collaborations in a One Health approach, and promoting data stewardship that will enhance the quality and application of climate and health research. MATCH is a searchable clearinghouse of publicly available Federal metadata including monitoring and surveillance data sets, early warning systems, and tools for characterizing the health impacts of global climate change. Examples of relevant databases include the Centers for Disease Control and Prevention's Environmental Public Health Tracking System and NOAA's National Climate Data Center's national and state temperature and precipitation data. This presentation will introduce the audience to this new web-based geoportal and demonstrate its features and potential applications.

  8. Developing Cyberinfrastructure Tools and Services for Metadata Quality Evaluation

    Science.gov (United States)

    Mecum, B.; Gordon, S.; Habermann, T.; Jones, M. B.; Leinfelder, B.; Powers, L. A.; Slaughter, P.

    2016-12-01

    Metadata and data quality are at the core of reusable and reproducible science. While great progress has been made over the years, much of the metadata collected only addresses data discovery, covering concepts such as titles and keywords. Improving metadata beyond the discoverability plateau means documenting detailed concepts within the data such as sampling protocols, instrumentation used, and variables measured. Given that metadata commonly do not describe their data at this level, how might we improve the state of things? Giving scientists and data managers easy to use tools to evaluate metadata quality that utilize community-driven recommendations is the key to producing high-quality metadata. To achieve this goal, we created a set of cyberinfrastructure tools and services that integrate with existing metadata and data curation workflows which can be used to improve metadata and data quality across the sciences. These tools work across metadata dialects (e.g., ISO19115, FGDC, EML, etc.) and can be used to assess aspects of quality beyond what is internal to the metadata such as the congruence between the metadata and the data it describes. The system makes use of a user-friendly mechanism for expressing a suite of checks as code in popular data science programming languages such as Python and R. This reduces the burden on scientists and data managers to learn yet another language. We demonstrated these services and tools in three ways. First, we evaluated a large corpus of datasets in the DataONE federation of data repositories against a metadata recommendation modeled after existing recommendations such as the LTER best practices and the Attribute Convention for Dataset Discovery (ACDD). Second, we showed how this service can be used to display metadata and data quality information to data producers during the data submission and metadata creation process, and to data consumers through data catalog search and access tools. Third, we showed how the centrally

  9. Making the Case for Embedded Metadata in Digital Images

    DEFF Research Database (Denmark)

    Smith, Kari R.; Saunders, Sarah; Kejser, U.B.

    2014-01-01

    This paper discusses the standards, methods, use cases, and opportunities for using embedded metadata in digital images. In this paper we explain the past and current work engaged with developing specifications, standards for embedding metadata of different types, and the practicalities of data...... exchange in heritage institutions and the culture sector. Our examples and findings support the case for embedded metadata in digital images and the opportunities for such use more broadly in non-heritage sectors as well. We encourage the adoption of embedded metadata by digital image content creators...... and curators as well as those developing software and hardware that support the creation or re-use of digital images. We conclude that the usability of born digital images as well as physical objects that are digitized can be extended and the files preserved more readily with embedded metadata....

  10. A Spatialization-based Method for Checking and Updating Metadata

    Institute of Scientific and Technical Information of China (English)

    2005-01-01

    In this paper the application of spatialization technology on metadata quality check and updating was discussed. A new method based on spatialization was proposed for checking and updating metadata to overcome the deficiency of text based methods with the powerful functions of spatial query and analysis provided by GIS software. This method employs the technology of spatialization to transform metadata into a coordinate space and the functions of spatial analysis in GIS to check and update spatial metadata in a visual environment. The basic principle and technical flow of this method were explained in detail, and an example of implementation using ArcMap of GIS software was illustrated with a metadata set of digital raster maps. The result shows the new method with the support of interaction of graph and text is much more intuitive and convenient than the ordinary text based method, and can fully utilize the functions of GIS spatial query and analysis with more accuracy and efficiency.

  11. Managing ebook metadata in academic libraries taming the tiger

    CERN Document Server

    Frederick, Donna E

    2016-01-01

    Managing ebook Metadata in Academic Libraries: Taming the Tiger tackles the topic of ebooks in academic libraries, a trend that has been welcomed by students, faculty, researchers, and library staff. However, at the same time, the reality of acquiring ebooks, making them discoverable, and managing them presents library staff with many new challenges. Traditional methods of cataloging and managing library resources are no longer relevant where the purchasing of ebooks in packages and demand driven acquisitions are the predominant models for acquiring new content. Most academic libraries have a complex metadata environment wherein multiple systems draw upon the same metadata for different purposes. This complexity makes the need for standards-based interoperable metadata more important than ever. In addition to complexity, the nature of the metadata environment itself typically varies slightly from library to library making it difficult to recommend a single set of practices and procedures which would be releva...

  12. A Distributed Metadata Management, Data Discovery and Access System

    CERN Document Server

    Palanisamy, Giriprakash; Green, Jim; Wilson, Bruce

    2010-01-01

    Mercury is a federated metadata harvesting, search and retrieval tool based on both open source and software developed at Oak Ridge National Laboratory. It was originally developed for NASA, and the Mercury development consortium now includes funding from NASA, USGS, and DOE. A major new version of Mercury was developed during 2007. This new version provides orders of magnitude improvements in search speed, support for additional metadata formats, integration with Google Maps for spatial queries, support for RSS delivery of search results, among other features. Mercury provides a single portal to information contained in disparate data management systems. It collects metadata and key data from contributing project servers distributed around the world and builds a centralized index. The Mercury search interfaces then allow the users to perform simple, fielded, spatial and temporal searches across these metadata sources. This centralized repository of metadata with distributed data sources provides extremely fa...

  13. Interpreting the ASTM 'content standard for digital geospatial metadata'

    Science.gov (United States)

    Nebert, Douglas D.

    1996-01-01

    ASTM and the Federal Geographic Data Committee have developed a content standard for spatial metadata to facilitate documentation, discovery, and retrieval of digital spatial data using vendor-independent terminology. Spatial metadata elements are identifiable quality and content characteristics of a data set that can be tied to a geographic location or area. Several Office of Management and Budget Circulars and initiatives have been issued that specify improved cataloguing of and accessibility to federal data holdings. An Executive Order further requires the use of the metadata content standard to document digital spatial data sets. Collection and reporting of spatial metadata for field investigations performed for the federal government is an anticipated requirement. This paper provides an overview of the draft spatial metadata content standard and a description of how the standard could be applied to investigations collecting spatially-referenced field data.

  14. Statistical Metadata: a Unified Approach to Management and Dissemination

    Directory of Open Access Journals (Sweden)

    Signore Marina

    2015-06-01

    Full Text Available This article illustrates a unified conceptual approach to metadata, whereby metadata describing the information content and structure of data and those describing the statistical process are managed jointly with metadata arising from administrative and support activities. Many different actors may benefit from this approach: internal users who are given the option to reuse information; internal management that is supported in the decision-making process, process industrialisation and standardisation as well as performance assessment; external users who are provided with data and process-related metadata as well as quality measures to retrieve data and use them properly. In the article, a general model useful for metadata representation is illustrated and its application presented. Relationships to existing frameworks and standards are also discussed and enhancements proposed.

  15. EXIF Custom: Automatic image metadata extraction for Scratchpads and Drupal

    Directory of Open Access Journals (Sweden)

    Ed Baker

    2013-09-01

    Full Text Available Many institutions and individuals use embedded metadata to aid in the management of their image collections. Many deskop image management solutions such as Adobe Bridge and online tools such as Flickr also make use of embedded metadata to describe, categorise and license images. Until now Scratchpads (a data management system and virtual research environment for biodiversity  have not made use of these metadata, and users have had to manually re-enter this information if they have wanted to display it on their Scratchpad site. The Drupal described here allows users to map metadata embedded in their images to the associated field in the Scratchpads image form using one or more customised mappings. The module works seamlessly with the bulk image uploader used on Scratchpads and it is therefore possible to upload hundreds of images easily with automatic metadata (EXIF, XMP and IPTC extraction and mapping.

  16. METADATA EXPANDED SEMANTICALLY BASED RESOURCE SEARCH IN EDUCATION GRID

    Institute of Scientific and Technical Information of China (English)

    2005-01-01

    With the rapid increase of educational resources, how to search for necessary educational resource quickly is one of most important issues. Educational resources have the characters of distribution and heterogeneity, which are the same as the characters of Grid resources. Therefore, the technology of Grid resources search was adopted to implement the educational resources search. Motivated by the insufficiency of currently resources search methods based on metadata, a method of extracting semantic relations between words constituting metadata is proposed. We mainly focus on acquiring synonymy, hyponymy, hypernymy and parataxis relations. In our schema, we extract texts related to metadata that will be expanded from text spatial through text extraction templates. Next, metadata will be obtained through metadata extraction templates. Finally, we compute semantic similarity to eliminate false relations and construct a semantic expansion knowledge base. The proposed method in this paper has been applied on the education grid.

  17. In situ localization and tissue distribution of the replication-associated proteins of Cucumber mosaic virus in tobacco and cucumber.

    Science.gov (United States)

    Cillo, Fabrizio; Roberts, Ian M; Palukaitis, Peter

    2002-11-01

    The replication-associated proteins encoded by Cucumber mosaic virus (CMV), the 1a and 2a proteins, were detected by immunogold labeling in two host species of this virus, tobacco (Nicotiana tabacum) and cucumber (Cucumis sativus). In both hosts, the 1a and 2a proteins colocalized predominantly to the vacuolar membranes, the tonoplast. While plus-strand CMV RNAs were found distributed throughout the cytoplasm by in situ hybridization, minus-strand CMV RNAs were barely detectable but were found associated with the tonoplast. In both cucumber and tobacco, 2a protein was detected at higher densities than 1a protein. The 1a and 2a proteins also showed quantitative differences with regard to tissue distributions in tobacco and cucumber. About three times as much 2a protein was detected in CMV-infected cucumber tissues as in CMV-infected tobacco tissues. In tobacco, high densities of these proteins were observed only in vascular bundle cells of minor veins. In contrast, in cucumber, high densities of 1a and 2a proteins were observed in mesophyll cells, followed by epidermis cells, with only low levels being observed in vascular bundle cells. Differences were also observed in the distributions of 2a protein and capsid protein in vascular bundle cells of the two host species. These observations may represent differences in the relative rates of tissue infection in different hosts or differences in the extent of virus replication in vascular tissues of different hosts.

  18. Effect of Root Layer Regulations on Soil Nitrate of the Rotation System of Sweet Corn-Cucumber in Greenhouse Vegetable Production System%根层调控措施对甜玉米-黄瓜设施蔬菜轮作体系土壤硝态氮的影响

    Institute of Scientific and Technical Information of China (English)

    郝晓然; 彭亚静; 张丽娟; 王琳; 巨晓棠; 吉艳芝; 任翠莲

    2015-01-01

    【目的】以甜玉米作为填闲作物,探讨不同的根层调控措施对消减土壤剖面累积硝态氮及下茬黄瓜生长的影响。【方法】在华北平原传统棚室蔬菜的休闲季种植甜玉米,针对甜玉米设置添加土壤调理剂和秸秆还田2种根层调控措施,以甜玉米传统种植作为对照,进行田间小区试验。试验于2008年5月至2011年5月进行,共3次甜玉米-黄瓜轮作,6季作物。每年6月初至9月底种植甜玉米,10月初至次年1月底扣棚育黄瓜苗,当年2月初种植黄瓜。在甜玉米季,共3个处理,随机排列,重复3次。小区面积为4 m×2 m,小区间隔0.3 m,区组之间布设1 m的保护行。【结果】甜玉米种植季,调理剂处理的玉米籽粒产量最高,2008、2009和2010年的产量分别为6.2、7.4和7.9 t·hm-2;土壤调理剂和秸秆还田2种根层调控处理的甜玉米总吸氮量高于传统种植。秸秆还田和调理剂处理能够促进20—60 cm土层根系的生长发育,促使根系吸收更深层的土壤养分。2种根层调控措施均能降低土壤剖面NO3--N的累积,尤其对100—200 cm的作物根区NO3--N的消减能力更强,NO3--N消减趋势大致为:调理剂>秸秆还田>传统种植。3季黄瓜种植季,不同前茬处理的黄瓜产量、生物量和吸氮量差异均不显著;3季平均土壤NO3--N在0—200 cm土层的残留量为秸秆还田straw returning of field>the traditional planting. After cucumber harvest in three seasons, the differences in cucumber yield, the biomass and nitrogen uptake were not significant, the average soil NO3--N residue of three seasons in 0-200 cm was in the order of straw returning of field

  19. The XML Metadata Editor of GFZ Data Services

    Science.gov (United States)

    Ulbricht, Damian; Elger, Kirsten; Tesei, Telemaco; Trippanera, Daniele

    2017-04-01

    Following the FAIR data principles, research data should be Findable, Accessible, Interoperable and Reuseable. Publishing data under these principles requires to assign persistent identifiers to the data and to generate rich machine-actionable metadata. To increase the interoperability, metadata should include shared vocabularies and crosslink the newly published (meta)data and related material. However, structured metadata formats tend to be complex and are not intended to be generated by individual scientists. Software solutions are needed that support scientists in providing metadata describing their data. To facilitate data publication activities of 'GFZ Data Services', we programmed an XML metadata editor that assists scientists to create metadata in different schemata popular in the earth sciences (ISO19115, DIF, DataCite), while being at the same time usable by and understandable for scientists. Emphasis is placed on removing barriers, in particular the editor is publicly available on the internet without registration [1] and the scientists are not requested to provide information that may be generated automatically (e.g. the URL of a specific licence or the contact information of the metadata distributor). Metadata are stored in browser cookies and a copy can be saved to the local hard disk. To improve usability, form fields are translated into the scientific language, e.g. 'creators' of the DataCite schema are called 'authors'. To assist filling in the form, we make use of drop down menus for small vocabulary lists and offer a search facility for large thesauri. Explanations to form fields and definitions of vocabulary terms are provided in pop-up windows and a full documentation is available for download via the help menu. In addition, multiple geospatial references can be entered via an interactive mapping tool, which helps to minimize problems with different conventions to provide latitudes and longitudes. Currently, we are extending the metadata editor

  20. Antiviral activity of plant extract from Tanacetum vulgare against Cucumber Mosaic Virus and Potato Virus Y

    Directory of Open Access Journals (Sweden)

    Nikolay Petrov

    2016-09-01

    Full Text Available Cucumber mosaic virus (CMV and Potato virus Y (PVY have been described among the top five important viruses infecting vegetable species worldwide. They cause severe damages in fruits and cultivated plants. There is currently no available effective pesticide to control these viral diseases. Higher plants contain a wide spectrum of secondary metabolites such as phenolics, flavonoids, quinones, tannins, essential oils, alkaloids, saponins, sterols and others. Extracts prepared from different plants have been reported to have a variety of properties including antifungal, antiviral and antibacterial properties against pathogens. Tanacetum vulgare (Tansy is native to Europe, Asia, and North Africa. It has many horticultural and pharmacological qualities. T. vulgare is principally used in traditional Asian and North African medicine as an antihelminthic, antispasmodic, stimulant to abdominal viscera, tonic, antidiabetic and diuretic, and it is antihypertensive. In our research we established antiviral effect of methanol extract from T. vulgare against CMV and PVY in tomato plants.

  1. Optimum Returns from Greenhouse Vegetables under Water Quality and Risk Constraints in the United Arab Emirates

    Directory of Open Access Journals (Sweden)

    Eihab Fathelrahman

    2017-04-01

    Full Text Available Greenhouses have been used in the United Arab Emirates (UAE to produce vegetables that contribute toward UAE food security, including offering fresh vegetable produce in the off-season. However, to manage such greenhouses, farmers face both technical and environmental limitations (i.e., high water scarcity, as well as vegetable market price instability. The objective of this study is to explore tradeoffs between returns (i.e., gross margin of selected vegetables (tomato, pepper, and cucumber, risk (deviation from gross margin means, and an environmental constraint (water salinity using a unique target MOTAD (minimization of total absolute deviations approach to support UAE farmer decision-making processes. The optimal target MOTAD solution included all three vegetables and no corner solution. The results showed tradeoffs between returns and risks, and confirmed that product diversification reduces overall risk. The analysis was consistent with farmer perceptions based on a survey of 78 producers in the region. The search for the optimal mix of vegetable production under UAE greenhouse conditions revealed that reduction in tomato production should be offset by an increase in cucumber production while maintaining a constant level of pepper production. In other words, risk is reduced as cucumber production increases due to the high level of tomato and lettuce price volatility as the alternative to cucumber. The results also demonstrated the importance of the water salinity environmental constraint, as it was found to have a positive marginal value in the optimal vegetable mix solution (i.e., important factor. Thus the optimal solution was highly sensitive to changes in the crop water salinity constraint. The study results also demonstrate that the target MOTAD approach is a suitable optimization methodology. As a practical approach, a decision-maker in the UAE can consider gross margin (total revenue-variable costs maximization with risk and water

  2. Predicting keeping quality of batches of numbers of cucumber fruit based on a physiological mechanism

    NARCIS (Netherlands)

    Schouten, R.E.; Tijskens, L.M.M.; Kooten, van O.

    2002-01-01

    The keeping quality for a cucumber, defined as the time the colour remains acceptable to the consumer, depends on the state of the chlorophyll metabolism. By building a physiological model of the chlorophyll metabolism for cucumbers and using colour data from cucumbers stored at 12, 20 and 28 °C,

  3. Detection of fruit fly infestation in pickling cucumbers using a hyperspectral reflectance/transmittance imaging system

    Science.gov (United States)

    Fruit fly infestation can be a serious problem in pickling cucumber production. In the United States and many other countries, there is zero tolerance for fruit flies in pickled cucumber products. Currently, processors rely on manual inspection to detect and remove fruit fly-infested cucumbers, whic...

  4. Development of automated inspection technology for quality grading of pickling cucumbers

    Science.gov (United States)

    Pickling cucumbers are susceptible to external and internal damage during growth, harvest, transport, and postharvest handling. It is estimated that approximately 5-10% of harvested pickling cucumbers fall into the defect category. Pickling cucumber quality defect can occur in the form of soft or wa...

  5. QTL mapping of parthenocarpic fruit set in North American processing cucumber

    Science.gov (United States)

    Parthenocarpy is a desirable trait with potential for increasing yield and quality in US processing cucumber production. Many successful parthenocarpic fresh market cucumber varieties have been developed, but the genetic and molecular mechanisms for parthenocarpic expression in cucumber is largely u...

  6. Lactobacilli and tartrazine as causative agents of a red colored spoilage in cucumber pickle products

    Science.gov (United States)

    The cucumber pickling industry has sporadically experienced spoilage outbreaks in fermented cucumber products characterized by development of red color on the surface of the cucumbers. Lactobacillus casei and Lactobacillus paracasei were isolated from two outbreaks of this spoilage which occurred a...

  7. Predicting keeping quality of batches of numbers of cucumber fruit based on a physiological mechanism

    NARCIS (Netherlands)

    Schouten, R.E.; Tijskens, L.M.M.; Kooten, van O.

    2002-01-01

    The keeping quality for a cucumber, defined as the time the colour remains acceptable to the consumer, depends on the state of the chlorophyll metabolism. By building a physiological model of the chlorophyll metabolism for cucumbers and using colour data from cucumbers stored at 12, 20 and 28 °C, th

  8. Taxonomic names, metadata, and the Semantic Web

    Directory of Open Access Journals (Sweden)

    Roderic D. M. Page

    2006-01-01

    Full Text Available Life Science Identifiers (LSIDs offer an attractive solution to the problem of globally unique identifiers for digital objects in biology. However, I suggest that in the context of taxonomic names, the most compelling benefit of adopting these identifiers comes from the metadata associated with each LSID. By using existing vocabularies wherever possible, and using a simple vocabulary for taxonomy-specific concepts we can quickly capture the essential information about a taxonomic name in the Resource Description Framework (RDF format. This opens up the prospect of using technologies developed for the Semantic Web to add ``taxonomic intelligence" to biodiversity databases. This essay explores some of these ideas in the context of providing a taxonomic framework for the phylogenetic database TreeBASE.

  9. Evolution of the ATLAS Metadata Interface (AMI)

    CERN Document Server

    Odier, Jerome; The ATLAS collaboration; Fulachier, Jerome; Lambert, Fabian

    2015-01-01

    The ATLAS Metadata Interface (AMI) can be considered to be a mature application because it has existed for at least 10 years. Over the years, the number of users and the number of functions provided for these users has increased. It has been necessary to adapt the hardware infrastructure in a seamless way so that the Quality of Service remains high. We will describe the evolution of the application from the initial one, using single server with a MySQL backend database, to the current state, where we use a cluster of Virtual Machines on the French Tier 1 Cloud at Lyon, an ORACLE database backend also at Lyon, with replication to CERN using ORACLE streams behind a back-up server.

  10. Meta-data based mediator generation

    Energy Technology Data Exchange (ETDEWEB)

    Critchlaw, T

    1998-06-28

    Mediators are a critical component of any data warehouse; they transform data from source formats to the warehouse representation while resolving semantic and syntactic conflicts. The close relationship between mediators and databases requires a mediator to be updated whenever an associated schema is modified. Failure to quickly perform these updates significantly reduces the reliability of the warehouse because queries do not have access to the most current data. This may result in incorrect or misleading responses, and reduce user confidence in the warehouse. Unfortunately, this maintenance may be a significant undertaking if a warehouse integrates several dynamic data sources. This paper describes a meta-data framework, and associated software, designed to automate a significant portion of the mediator generation task and thereby reduce the effort involved in adapting to schema changes. By allowing the DBA to concentrate on identifying the modifications at a high level, instead of reprogramming the mediator, turnaround time is reduced and warehouse reliability is improved.

  11. Integrating Structured Metadata with Relational Affinity Propagation

    CERN Document Server

    Plangprasopchok, Anon; Getoor, Lise

    2010-01-01

    Structured and semi-structured data describing entities, taxonomies and ontologies appears in many domains. There is a huge interest in integrating structured information from multiple sources; however integrating structured data to infer complex common structures is a difficult task because the integration must aggregate similar structures while avoiding structural inconsistencies that may appear when the data is combined. In this work, we study the integration of structured social metadata: shallow personal hierarchies specified by many individual users on the SocialWeb, and focus on inferring a collection of integrated, consistent taxonomies. We frame this task as an optimization problem with structural constraints. We propose a new inference algorithm, which we refer to as Relational Affinity Propagation (RAP) that extends affinity propagation (Frey and Dueck 2007) by introducing structural constraints. We validate the approach on a real-world social media dataset, collected from the photosharing website ...

  12. Metadata salad at the Cordoba Observatory

    CERN Document Server

    Lencinas, Verónica

    2016-01-01

    The Plate Archive of the Cordoba Observatory includes 20.000 photographs and spectra on glass plates dating from 1893 to 1983. This contribution describes the work performed since the plate archive was transferred to the Observatory Library in 2011. In 2014 an interdisciplinary team was assembled and a research grant from the National University of Cordoba was obtained with the objectives of preserving the glass plates and generate public access for astronomers and other audiences. The preservation work not only includes practical intervention to improve conservation conditions for the whole archive, but also a diagnose of the preservation conditions for the plates and identification of best practices for cleaning the plates. The access envisioned through digitization requires not only the scanning of all the plates, but also careful definition and provision of metadata. In this regard, each institutional level involved -in this case: archive, library, astronomical observatory and public university - demands ...

  13. A Highly Available Grid Metadata Catalog

    DEFF Research Database (Denmark)

    Jensen, Henrik Thostrup; Kleist, Joshva

    2009-01-01

    This article presents a metadata catalog, intended foruse in grids. The catalog provides high availability, by replication across several hosts. The replicas are kept consistent using a replication protocol based on the Paxos algorithm. A majority of the replicas must be available in order...... for the system to function. The data model used in the catalog is RDF, which allows users to create theirown name spaces and schemas. Querying is performed using SPARQL. Additionally the catalog can be used as a synchronization mechanism, by utilizing a compare and swap operation. The catalog is accessed using...... HTTP with proxy certificates, and uses GACL for flexible access control.The performance of the catalog is tested in several ways, including a distributed setup between geographically separated sites....

  14. Design and Implementation of a Metadata-rich File System

    Energy Technology Data Exchange (ETDEWEB)

    Ames, S; Gokhale, M B; Maltzahn, C

    2010-01-19

    Despite continual improvements in the performance and reliability of large scale file systems, the management of user-defined file system metadata has changed little in the past decade. The mismatch between the size and complexity of large scale data stores and their ability to organize and query their metadata has led to a de facto standard in which raw data is stored in traditional file systems, while related, application-specific metadata is stored in relational databases. This separation of data and semantic metadata requires considerable effort to maintain consistency and can result in complex, slow, and inflexible system operation. To address these problems, we have developed the Quasar File System (QFS), a metadata-rich file system in which files, user-defined attributes, and file relationships are all first class objects. In contrast to hierarchical file systems and relational databases, QFS defines a graph data model composed of files and their relationships. QFS incorporates Quasar, an XPATH-extended query language for searching the file system. Results from our QFS prototype show the effectiveness of this approach. Compared to the de facto standard, the QFS prototype shows superior ingest performance and comparable query performance on user metadata-intensive operations and superior performance on normal file metadata operations.

  15. Kaiser Permanente's "metadata-driven" national clinical intranet.

    Science.gov (United States)

    Dolin, R H; Boles, M; Dolin, R; Green, S; Hanifin, S; Hochhalter, B; Inglesis, R; Ivory, M; Levy, D; Nadspal, K; Rae, M A; Rucks, C J; Snyder, A; Stibolt, T; Stiefel, M; Travis, V

    2001-01-01

    This paper describes the approach taken to build Kaiser Permanente's national clinical intranet. A primary objective for the site is to facilitate resource discovery, which is enabled by the use of "metadata", or data (fields and field values) that describe the various resources available. Users can perform full text queries and/or fielded searching against the metadata. Metadata serves as the organizing principle of the site--it is used to index documents, sort search results, and structure the site's table of contents. The site's use of metadata--what it is, how it is created, how it is applied to documents, how it is indexed, how it is presented to the user in the search and the search results interface, and how it is used to construct the table of contents for the web site--will be discussed in detail. The result is that KP's national clinical intranet has coupled the power of Internet-like full text search engines with the power of MedLine-like fielded searching in order to maximize search precision and recall. Organizing content on the site in accordance with the metadata promotes overall consistency. Issues currently under investigation include how to better exploit the power of the controlled terminology within the metadata; whether the value gained is worth the cost of collecting metadata; and how automatic classification algorithms might obviate the need for manual document indexing.

  16. DEAM:Decoupled, Expressive, Area-Efficient Metadata Cache

    Institute of Scientific and Technical Information of China (English)

    ‘刘鹏; 方磊; 黄巍

    2014-01-01

    Chip multiprocessor presents brand new opportunities for holistic on-chip data and coherence management solutions. An intelligent protocol should be adaptive to the fine-grain accessing behavior. And in terms of storage of metadata, the size of conventional directory grows as the square of the number of processors, making it very expensive in large-scale systems. In this paper, we propose a metadata cache framework to achieve three goals: 1) reducing the latency of data access and coherence activities, 2) saving the storage of metadata, and 3) providing support for other optimization techniques. The metadata is implemented with compact structures and tracks the dynamically changing access pattern. The pattern information is used to guide the delegation and replication of decoupled data and metadata to allow fast access. We also use our metadata cache as a building block to enhance stream prefetching. Using detailed execution-driven simulation, we demonstrate that our protocol achieves an average speedup of 1.12X compared with a shared cache protocol with 1/5 of the storage of metadata.

  17. Semantic Metadata for Heterogeneous Spatial Planning Documents

    Science.gov (United States)

    Iwaniak, A.; Kaczmarek, I.; Łukowicz, J.; Strzelecki, M.; Coetzee, S.; Paluszyński, W.

    2016-09-01

    Spatial planning documents contain information about the principles and rights of land use in different zones of a local authority. They are the basis for administrative decision making in support of sustainable development. In Poland these documents are published on the Web according to a prescribed non-extendable XML schema, designed for optimum presentation to humans in HTML web pages. There is no document standard, and limited functionality exists for adding references to external resources. The text in these documents is discoverable and searchable by general-purpose web search engines, but the semantics of the content cannot be discovered or queried. The spatial information in these documents is geographically referenced but not machine-readable. Major manual efforts are required to integrate such heterogeneous spatial planning documents from various local authorities for analysis, scenario planning and decision support. This article presents results of an implementation using machine-readable semantic metadata to identify relationships among regulations in the text, spatial objects in the drawings and links to external resources. A spatial planning ontology was used to annotate different sections of spatial planning documents with semantic metadata in the Resource Description Framework in Attributes (RDFa). The semantic interpretation of the content, links between document elements and links to external resources were embedded in XHTML pages. An example and use case from the spatial planning domain in Poland is presented to evaluate its efficiency and applicability. The solution enables the automated integration of spatial planning documents from multiple local authorities to assist decision makers with understanding and interpreting spatial planning information. The approach is equally applicable to legal documents from other countries and domains, such as cultural heritage and environmental management.

  18. SEMANTIC METADATA FOR HETEROGENEOUS SPATIAL PLANNING DOCUMENTS

    Directory of Open Access Journals (Sweden)

    A. Iwaniak

    2016-09-01

    Full Text Available Spatial planning documents contain information about the principles and rights of land use in different zones of a local authority. They are the basis for administrative decision making in support of sustainable development. In Poland these documents are published on the Web according to a prescribed non-extendable XML schema, designed for optimum presentation to humans in HTML web pages. There is no document standard, and limited functionality exists for adding references to external resources. The text in these documents is discoverable and searchable by general-purpose web search engines, but the semantics of the content cannot be discovered or queried. The spatial information in these documents is geographically referenced but not machine-readable. Major manual efforts are required to integrate such heterogeneous spatial planning documents from various local authorities for analysis, scenario planning and decision support. This article presents results of an implementation using machine-readable semantic metadata to identify relationships among regulations in the text, spatial objects in the drawings and links to external resources. A spatial planning ontology was used to annotate different sections of spatial planning documents with semantic metadata in the Resource Description Framework in Attributes (RDFa. The semantic interpretation of the content, links between document elements and links to external resources were embedded in XHTML pages. An example and use case from the spatial planning domain in Poland is presented to evaluate its efficiency and applicability. The solution enables the automated integration of spatial planning documents from multiple local authorities to assist decision makers with understanding and interpreting spatial planning information. The approach is equally applicable to legal documents from other countries and domains, such as cultural heritage and environmental management.

  19. A Pan-European and Cross-Discipline Metadata Portal

    Science.gov (United States)

    Widmann, Heinrich; Thiemann, Hannes; Lautenschlager, Michael

    2014-05-01

    In recent years, significant investments have been made to create a pan-European e-infrastructure supporting multiple and diverse research communities. This led to the establishment of the community-driven European Data Infrastructure (EUDAT) project that implements services to tackle the specific challenges of international and interdisciplinary research data management. The EUDAT metadata service B2FIND plays a central role in this context as a repository and a search portal for the diverse metadata collected from heterogeneous sources. For this we built up a comprehensive joint metadata catalogue and an open data portal and offer support for new communities interested in publishing their data within EUDAT. The implemented metadata ingestion workflow consists in three steps. First the metadata records - provided either by various research communities or via other EUDAT services - are harvested. Afterwards the raw metadata records are converted and mapped to unified key-value dictionaries. The semantic mapping of the non-uniform community specific metadata to homogenous structured datasets is hereby the most subtle and challenging task. Finally the mapped records are uploaded as datasets to the catalogue and displayed in the portal. The homogenisation of the different community specific data models and vocabularies enables not only the unique presentation of these datasets as tables of field-value pairs but also the faceted, spatial and temporal search in the B2FIND metadata portal. Furthermore the service provides transparent access to the scientific data objects through the given references in the metadata. We present here the functionality and the features of the B2FIND service and give an outlook of further developments.

  20. Metadata Creation, Management and Search System for your Scientific Data

    Science.gov (United States)

    Devarakonda, R.; Palanisamy, G.

    2012-12-01

    Mercury Search Systems is a set of tools for creating, searching, and retrieving of biogeochemical metadata. Mercury toolset provides orders of magnitude improvements in search speed, support for any metadata format, integration with Google Maps for spatial queries, multi-facetted type search, search suggestions, support for RSS (Really Simple Syndication) delivery of search results, and enhanced customization to meet the needs of the multiple projects that use Mercury. Mercury's metadata editor provides a easy way for creating metadata and Mercury's search interface provides a single portal to search for data and information contained in disparate data management systems, each of which may use any metadata format including FGDC, ISO-19115, Dublin-Core, Darwin-Core, DIF, ECHO, and EML. Mercury harvests metadata and key data from contributing project servers distributed around the world and builds a centralized index. The search interfaces then allow the users to perform a variety of fielded, spatial, and temporal searches across these metadata sources. This centralized repository of metadata with distributed data sources provides extremely fast search results to the user, while allowing data providers to advertise the availability of their data and maintain complete control and ownership of that data. Mercury is being used more than 14 different projects across 4 federal agencies. It was originally developed for NASA, with continuing development funded by NASA, USGS, and DOE for a consortium of projects. Mercury search won the NASA's Earth Science Data Systems Software Reuse Award in 2008. References: R. Devarakonda, G. Palanisamy, B.E. Wilson, and J.M. Green, "Mercury: reusable metadata management data discovery and access system", Earth Science Informatics, vol. 3, no. 1, pp. 87-94, May 2010. R. Devarakonda, G. Palanisamy, J.M. Green, B.E. Wilson, "Data sharing and retrieval using OAI-PMH", Earth Science Informatics DOI: 10.1007/s12145-010-0073-0, (2010);

  1. Knowledge and Metadata Integration for Warehousing Complex Data

    CERN Document Server

    Ralaivao, Jean-Christian

    2008-01-01

    With the ever-growing availability of so-called complex data, especially on the Web, decision-support systems such as data warehouses must store and process data that are not only numerical or symbolic. Warehousing and analyzing such data requires the joint exploitation of metadata and domain-related knowledge, which must thereby be integrated. In this paper, we survey the types of knowledge and metadata that are needed for managing complex data, discuss the issue of knowledge and metadata integration, and propose a CWM-compliant integration solution that we incorporate into an XML complex data warehousing framework we previously designed.

  2. Publishing NASA Metadata as Linked Open Data for Semantic Mashups

    Science.gov (United States)

    Wilson, Brian; Manipon, Gerald; Hua, Hook

    2014-05-01

    Data providers are now publishing more metadata in more interoperable forms, e.g. Atom or RSS 'casts', as Linked Open Data (LOD), or as ISO Metadata records. A major effort on the part of the NASA's Earth Science Data and Information System (ESDIS) project is the aggregation of metadata that enables greater data interoperability among scientific data sets regardless of source or application. Both the Earth Observing System (EOS) ClearingHOuse (ECHO) and the Global Change Master Directory (GCMD) repositories contain metadata records for NASA (and other) datasets and provided services. These records contain typical fields for each dataset (or software service) such as the source, creation date, cognizant institution, related access URL's, and domain and variable keywords to enable discovery. Under a NASA ACCESS grant, we demonstrated how to publish the ECHO and GCMD dataset and services metadata as LOD in the RDF format. Both sets of metadata are now queryable at SPARQL endpoints and available for integration into "semantic mashups" in the browser. It is straightforward to reformat sets of XML metadata, including ISO, into simple RDF and then later refine and improve the RDF predicates by reusing known namespaces such as Dublin core, georss, etc. All scientific metadata should be part of the LOD world. In addition, we developed an "instant" drill-down and browse interface that provides faceted navigation so that the user can discover and explore the 25,000 datasets and 3000 services. The available facets and the free-text search box appear in the left panel, and the instantly updated results for the dataset search appear in the right panel. The user can constrain the value of a metadata facet simply by clicking on a word (or phrase) in the "word cloud" of values for each facet. The display section for each dataset includes the important metadata fields, a full description of the dataset, potentially some related URL's, and a "search" button that points to an Open

  3. Metadata Evaluation and Improvement: Evolving Analysis and Reporting

    Science.gov (United States)

    Habermann, Ted; Kozimor, John; Gordon, Sean

    2017-01-01

    ESIP Community members create and manage a large collection of environmental datasets that span multiple decades, the entire globe, and many parts of the solar system. Metadata are critical for discovering, accessing, using and understanding these data effectively and ESIP community members have successfully created large collections of metadata describing these data. As part of the White House Big Earth Data Initiative (BEDI), ESDIS has developed a suite of tools for evaluating these metadata in native dialects with respect to recommendations from many organizations. We will describe those tools and demonstrate evolving techniques for sharing results with data providers.

  4. Metadata in Chaos: how researchers tag radio broadcasts

    DEFF Research Database (Denmark)

    Lykke, Marianne; Lund, Haakon; Skov, Mette

    2015-01-01

    is to provide access to broadcasts and provide tools to segment and manage concrete segments of radio broadcasts. Although the assigned metadata are project-specific, they serve as invaluable access points for fellow researchers due to their factual and neutral nature. The researchers particularly stress LARM.fm...... apply the metadata scheme in their research work. The study consists of two studies, a) a qualitative study of subjects and vocabulary of the applied metadata and annotations, and 5 semi-structured interviews about goals for tagging. The findings clearly show that the primary role of LARM.fm...

  5. Sea Cucumber: New source of Protein for Human Consumption

    Directory of Open Access Journals (Sweden)

    Daniela Vaz Pratas

    2014-06-01

    Full Text Available Aquaculture, probably the fastest growing food-producing sector, now accounts for nearly 50 percent of the world's food fish consumed by humans, and this share is expected to increase further to meet future demand. Sea cucumbers are considered highly marketable product and this has resulted in an increasing overfishing of natural sea cucumber stocks. Nevertheless, these resources are almost unexploited in the Mediterranean region. Many species of holothurians have been recognized as an alternative source of first quality protein and considered a putative functional food, like hypocholesterolemic proprieties and contain many other bioactive compounds. Therefore, the aim of the present study was to determine and compare the protein content of two sea cucumber species, Holothuria forskali and Stichopus regalis. The Kjeldahl method was used to determine the crude protein through the measurement of nitrogen amount in each sample. The obtained results demonstrated that both species contain high protein levels, with higher results for S. regalis, which revealed values between 19,1% and 20,4%. H. forskali showed a protein level among 12,1% and 15,4%. Holothurian protein levels reveal great potential for human consumption. Those resources can be used as a partial substitute of fish meal (eg. sea bream nutrition, either to intern market as well as for exportation to Asian countries. Sea cucumber farming could have lucrative potential in the Mediterranean, converting sea cucumbers into aquaculture value-added products bringing to this region profitable economic benefits.

  6. Relative incidence of Bactrocera cucurbitae (Coquillett) and Dacus ciliatus Loew on cucurbitaceous vegetables

    Energy Technology Data Exchange (ETDEWEB)

    Kumar, N.K. Krishna; Verghese, Abraham; Shivakumara, B.; Krishnamoorthy, P.N.; Ranganath, H.R. [Indian Institute of Horticultural Research, Bangalore (India). Div. of Entomology and Nematology

    2006-07-01

    The melon fly, Bactrocera cucurbitae (Coquillett) is a major pest of cucurbitaceous vegetables and fruits in many parts of the world. Infestation of an another species, the lesser pumpkin fly, Dacus ciliatus Loew is reported on a few cucurbits in the Indian sub-continent and Africa. While extensive work on seasonality, infestation percent, host preference, attraction to para pheromone on B. cucurbitae has been reported, little is known of D. ciliatus. Field experiments were carried out at the Indian Institute of Horticultural Research (IIHR), Bangalore (12058'N; 77035'E) from June 2002- October 2003. Cucumber (Cucumis sativus L), ridge gourd (Luffa acutangula (L.) Roxb), bitter gourd (Momordica charantia L.) and pickling cucumbers [C. sativus L (variety. Ijax)] were raised at monthly interval. Cue lure baited bottle traps were hung to monitor B. cucurbitae and other related species. Bactrocera cucurbitae was present all through the year and maximum number of adults was trapped during August (14.14/trap/week). Dacus ciliatus was trapped only from May to October but in relatively less numbers ({approx} 1/week). Maximum fruit fly infestation was 77.03 % on bitter gourd (August 2003), 75.65 % on ridge gourd (Nov. 02), 73.83 % on cucumber (October, 02) and 63.31 % on pickling cucumber (October, 02). Trap catches of B. cucurbitae was significantly and positively correlated with relative humidity. Maximum and minimum temperature, RH (%), rainfall (mm), evaporation (mm) and wind speed (km/h) collectively determined 44 % of B. cucurbitae trap catches. Maximum fruit fly emergence of 494.64/ kg fruit was on bitter gourd (October, 2002) followed by cucumber (431.97, November, 2002), pickling cucumber (307.51, October 2002) and ridge gourd (210.74, October, 2003). Dacus ciliatus formed only 4.5% of the total number of fruit flies on bitter gourd and 0.2% on pickling cucumber. Its infestation was not observed on cucumber and ridge gourd. Parasitism by the larval

  7. Design and Implementation of Two-Level Metadata Server in Small-Scale Cluster File System

    Institute of Scientific and Technical Information of China (English)

    LIU Yuling; YU Hongfen; SONG Weiwei

    2006-01-01

    The reliability and high performance of metadata service is crucial to the store architecture. A novel design of a two-level metadata server file system (TTMFS) is presented, which behaves high reliability and performance. The merits both centralized management and distributed management are considered simultaneously in our design. In this file system, the advanced-metadata server is responsible for manage directory metadata and the whole namespace. The double-metadata server is responsible for maintaining file metadata. And this paper uses the Markov return model to analyze the reliability of the two-level metadata server. The experiment data indicates that the design can provide high throughput.

  8. Effect of Various Nitrogen Fertilizers and Their Levels on Big-Arch Shelter Cucumber Yield and Water Use Efficiency

    Directory of Open Access Journals (Sweden)

    Zhaopeng Ou Yang

    2013-06-01

    Full Text Available Vegetables are mainly cultivated through facility in early spring and late autumn in Northern of China. In the case of a serious shortage of water resources, water use efficiency of greenhouse vegetable is of an important scientific significance in both water and fertilizer management. On the basis of pan Evaporation (Ep and real-time monitoring of soil moisture content, the amount of water irrigation adequate to big-arch shelter cucumber growth, water dissipation, yield and water use efficiency were determined through the combination of three nitrogen fertilizers including urea, urea containing nitrification inhibitors (5:1 with urea and nitrification inhibitor and coated urea (slow fertilizer and their various levels with 0 kg/ha, 350 kg/ha, 550 kg/ha, 750 kg/ha. The results showed that the most 10,9000 kg/ha production was gained by the treatment of 550 kg/ha urea containing inhibitors, which could increase 41.5% of a yield, 15.2% of a cumulative water consumption that was at 462.0mm and 44.7% of a water use efficiency that is at 14.11kg (dry matter/(mm• ha, compared with that of control, respectively. In conclusion, the present study demonstrates that the application of moderate levels of urea containing nitrification inhibitor in greenhouse cucumber can gain higher yields and water use efficiency.

  9. Metadata and Metacognition: How can we stimulate reflection for learning?

    NARCIS (Netherlands)

    Specht, Marcus

    2012-01-01

    Specht, M. (2012, 12 September). Metadata and Metacognition: How can we stimulate reflection for learning? Invited presentation given at the seminar on awareness and reflection in learning at the University of Leuven, Leuven, Belgium.

  10. Precision Pointing Reconstruction and Geometric Metadata Generation for Cassini Images

    Science.gov (United States)

    French, R. S.; Showalter, M. R.; Gordon, M. K.

    2017-06-01

    We are reconstructing accurate pointing for 400,000 images taken by Cassini at Saturn. The results will be provided to the public along with per-pixel metadata describing precise image contents such as geographical location and viewing geometry.

  11. A framework for basic administrative metadata in digital libraries

    Institute of Scientific and Technical Information of China (English)

    ZHENG; Qiaoying; WANG; Shaoping

    2008-01-01

    Administrative metadata means the expansion of the metadata research to the administrative level of resource development.Based on the basic administrative sections in the information resource lifecycle(IRL),the framework for basic administrative metadata(FBAM)is helpful in constructing open interoperable platforms for acquisition,processing and services of information resources in digital libraries.It facilitates the seamless communication,the cooperative construction and management,and the sharing of digital resources.The formulation of FBAM follows the principles of modularity and openness that promote interoperability in resource management.It also adopts the structured methodology of information system design,with which the FBAM data model is developed in conformity withand PREMIS.The capabilities of FBAM are driven by a metadata repository with administrative information that is contained in FBAM records.

  12. Toward element-level interoperability in bibliographic metadata

    Directory of Open Access Journals (Sweden)

    Eric Childress

    2008-03-01

    Full Text Available This paper discusses an approach and set of tools for translating bibliographic metadata from one format to another. A computational model is proposed to formalize the notion of a 'crosswalk'. The translation process separates semantics from syntax, and specifies a crosswalk as machine executable translation files which are focused on assertions of element equivalence and are closely associated with the underlying intellectual analysis of metadata translation. A data model developed by the authors called Morfrom serves as an internal generic metadata format. Translation logic is written in an XML scripting language designed by the authors called the Semantic Equivalence Expression Language (Seel. These techniques have been built into an OCLC software toolkit to manage large and diverse collections of metadata records, called the Crosswalk Web Service.

  13. Metadata and Metacognition: How can we stimulate reflection for learning?

    NARCIS (Netherlands)

    Specht, Marcus

    2012-01-01

    Specht, M. (2012, 12 September). Metadata and Metacognition: How can we stimulate reflection for learning? Invited presentation given at the seminar on awareness and reflection in learning at the University of Leuven, Leuven, Belgium.

  14. Distributed metadata in a high performance computing environment

    Energy Technology Data Exchange (ETDEWEB)

    Bent, John M.; Faibish, Sorin; Zhang, Zhenhua; Liu, Xuezhao; Tang, Haiying

    2017-07-11

    A computer-executable method, system, and computer program product for managing meta-data in a distributed storage system, wherein the distributed storage system includes one or more burst buffers enabled to operate with a distributed key-value store, the co computer-executable method, system, and computer program product comprising receiving a request for meta-data associated with a block of data stored in a first burst buffer of the one or more burst buffers in the distributed storage system, wherein the meta data is associated with a key-value, determining which of the one or more burst buffers stores the requested metadata, and upon determination that a first burst buffer of the one or more burst buffers stores the requested metadata, locating the key-value in a portion of the distributed key-value store accessible from the first burst buffer.

  15. USGS 24k Digital Raster Graphic (DRG) Metadata

    Data.gov (United States)

    Minnesota Department of Natural Resources — Metadata for the scanned USGS 24k Topograpic Map Series (also known as 24k Digital Raster Graphic). Each scanned map is represented by a polygon in the layer and the...

  16. Metadata and Service at the GFZ ISDC Portal

    Science.gov (United States)

    Ritschel, B.

    2008-05-01

    The online service portal of the GFZ Potsdam Information System and Data Center (ISDC) is an access point for all manner of geoscientific geodata, its corresponding metadata, scientific documentation and software tools. At present almost 2000 national and international users and user groups have the opportunity to request Earth science data from a portfolio of 275 different products types and more than 20 Million single data files with an added volume of approximately 12 TByte. The majority of the data and information, the portal currently offers to the public, are global geomonitoring products such as satellite orbit and Earth gravity field data as well as geomagnetic and atmospheric data for the exploration. These products for Earths changing system are provided via state-of-the art retrieval techniques. The data product catalog system behind these techniques is based on the extensive usage of standardized metadata, which are describing the different geoscientific product types and data products in an uniform way. Where as all ISDC product types are specified by NASA's Directory Interchange Format (DIF), Version 9.0 Parent XML DIF metadata files, the individual data files are described by extended DIF metadata documents. Depending on the beginning of the scientific project, one part of data files are described by extended DIF, Version 6 metadata documents and the other part are specified by data Child XML DIF metadata documents. Both, the product type dependent parent DIF metadata documents and the data file dependent child DIF metadata documents are derived from a base-DIF.xsd xml schema file. The ISDC metadata philosophy defines a geoscientific product as a package consisting of mostly one or sometimes more than one data file plus one extended DIF metadata file. Because NASA's DIF metadata standard has been developed in order to specify a collection of data only, the extension of the DIF standard consists of new and specific attributes, which are necessary for

  17. Requirements for multimedia metadata schemes in surveillance applications for security

    NARCIS (Netherlands)

    Rest, J.; Grootjen, F.A.; Grootjen, M.; Wijn, R.; Aarts, O.; Roelofs, M.L.; Burghouts, G.J.; Bouma, H.; Alic, L.; Kraaij, W.

    2014-01-01

    Surveillance for security requires communication between systems and humans, involves behavioural and multimedia research, and demands an objective benchmarking for the performance of system components. Metadata representation schemes are extremely important to facilitate (system) interoperability a

  18. Large geospatial images discovery: metadata model and technological framework

    Directory of Open Access Journals (Sweden)

    Lukáš Brůha

    2015-12-01

    Full Text Available The advancements in geospatial web technology triggered efforts for disclosure of valuable resources of historical collections. This paper focuses on the role of spatial data infrastructures (SDI in such efforts. The work describes the interplay between SDI technologies and potential use cases in libraries such as cartographic heritage. The metadata model is introduced to link up the sources from these two distinct fields. To enhance the data search capabilities, the work focuses on the representation of the content-based metadata of raster images, which is the crucial prerequisite to target the search in a more effective way. The architecture of the prototype system for automatic raster data processing, storage, analysis and distribution is introduced. The architecture responds to the characteristics of input datasets, namely to the continuous flow of very large raster data and related metadata. Proposed solutions are illustrated on the case study of cartometric analysis of digitised early maps and related metadata encoding.

  19. Biological and Molecular Characterization of Cucumber mosaic virus Subgroup II Isolate Causing Severe Mosaic in Cucumber.

    Science.gov (United States)

    Kumari, Reenu; Bhardwaj, Pooja; Singh, Lakhmir; Zaidi, Aijaz A; Hallan, Vipin

    2013-06-01

    Cucumber mosaic virus (CMV) has a wide host range causing severe damage in many important agricultural and ornamental crops. Earlier reports showed the prevalence of CMV subgroup I isolates in India. However, some recent reports point towards increasing incidence of subgroup II isolates in the country. The complete genome of a CMV isolate causing severe mosaic in cucumber was characterized and its phylogenetic analysis with other 21 CMV isolates reported worldwide clustered it with subgroup II strains. The genome comprised of RNA 1 (3,379 nucleotides), RNA 2 (3,038 nucleotides) and RNA 3 (2,206 nucleotides). The isolate showed highest homology with subgroup II isolates: 95.1-98.7, 87.7-98.0, and 85.4-97.1 % within RNA1, RNA2, and RNA3, respectively. RNA1 and RNA2 were closely related to the Japanese isolate while RNA3 clustered with an American isolate. Host range studies revealed that isolate showed severe mosaic symptoms on Nicotiana spp. and Cucumis spp. The isolate induced leaf deformation and mild filiform type symptoms in tomato. To best of our knowledge this is the first report of complete genome of CMV subgroup II isolate from India.

  20. THE IMPACT OF SILICON ON TRANSCRIPTS RELATED TO CUCUMBER MOSAIC VIRUS INFECTION IN CUCUMBER.

    Science.gov (United States)

    Holz, S; Kube, M; Bartoszewski, G; Büttner, C

    2015-01-01

    The role of soluble silicon (Si) in alleviating viral plant infections is largely unknown. In order to analyse this gap in knowledge, this study provides insights into the relative gene expression data obtained from 1) control, 2) Cucumber mosaic virus (CMV)-infected and 3) sodium silica-treated, CMV-infected Cucumis sativus line B10 tissue cultures regenerated plants. The absence or presence of CMV was determined through RT-PCR, six days' post-inoculation. qRT-PCR was performed on five selected host genes related to CMV-defence (argonaute protein, WRKY transcription factor) and replication (chaperone, heat shock cognate protein, aquaporin). Relative gene expressions from Si-treated, CMV-infected clones were not significantly different from CMV-infected clones, but they were significantly different from the control plants. The upregulation of the chaperone, and heat shock cognate genes in Si-treated clones, is associated with enhanced virus replication, while the gene expression of the transcription factor increases and is related to defence, in contrast to decreased expression in CMV-infected clones. Aquaporin gene expression was downregulated and the argonaute expression was unaffected in both Si-treated, CMV-infected as well as CMV-infected clones. Since both alleviating and supportive gene shifts are observed in Si-treated plantlets for key genes related to the virus infection examined herein, sodium silica is suggested to have a neutral and limited impact on CMV infection in cucumber cultures.

  1. An Improved Bioassay for Cytokinins Using Cucumber Cotyledons 1

    Science.gov (United States)

    Fletcher, R. A.; Kallidumbil, V.; Steele, P.

    1982-01-01

    The cucumber cotyledon greening bioassay is frequently used for detecting cytokinins. Beneficial modifications of the original technique included using 5-day-old cucumber (Cucumus sativus L., cv. National Pickling) cotyledons treated with combinations of 40 millimolar KCl and various concentrations of cytokinins. A dark incubation period of 20 hours was followed by an exposure to light for 3.5 hours. Under these conditions, extremely low (0.0001 milligram per liter) concentrations of N6-benzyladenine, zeatin, kinetin, or zeatin riboside can be detected. Of the four cytokinins tested, kinetin appeared to be the least active. With these improvements, the assay is 10 times more sensitive than is the previously described cucumber cotyledon greening bioassay for cytokinins. PMID:16662273

  2. An improved bioassay for cytokinins using cucumber cotyledons.

    Science.gov (United States)

    Fletcher, R A; Kallidumbil, V; Steele, P

    1982-03-01

    The cucumber cotyledon greening bioassay is frequently used for detecting cytokinins. Beneficial modifications of the original technique included using 5-day-old cucumber (Cucumus sativus L., cv. National Pickling) cotyledons treated with combinations of 40 millimolar KCl and various concentrations of cytokinins. A dark incubation period of 20 hours was followed by an exposure to light for 3.5 hours. Under these conditions, extremely low (0.0001 milligram per liter) concentrations of N(6)-benzyladenine, zeatin, kinetin, or zeatin riboside can be detected. Of the four cytokinins tested, kinetin appeared to be the least active. With these improvements, the assay is 10 times more sensitive than is the previously described cucumber cotyledon greening bioassay for cytokinins.

  3. Molds in Brined Cucumbers: Cause of Softening During Air-Purging of Fermentations †

    Science.gov (United States)

    Costilow, Ralph N.; Gates, Karen; Lacy, Melvyn L.

    1980-01-01

    Softening of cucumbers in fermentations purged at high air-flow rates was caused by molds growing in the brined cucumbers, not in the brine. This conclusion is based on the following results: (i) no microorganisms were isolated in significant numbers from brines that caused softening of pasteurized brined cucumbers, (ii) no pectinolytic enzyme activities were produced in cucumber brines in the absence of cucumbers, (iii) the pickles in some air-purged fermentations became very soft without the appearance of any pectinolytic enzyme activity in the brine, (iv) mold hyphae were consistently observed in tissues of soft pickles, (v) molds consistently developed in cultures of slices of surface sterilized cucumbers taken from fermentations in which soft pickles were subsequently found, and (vi) molds belonging to the genera Alternaria, Fusarium, and Mucor isolated from slices all softened pasteurized brined cucumbers. Images PMID:16345619

  4. Metadata and Data Quality Problems in the Digital Library

    OpenAIRE

    Beall, Jeffrey

    2006-01-01

    This paper describes the main types of data quality errors that occur in digital libraries, both in full-text objects and in metadata. Studying these errors is important because they can block access to online documents and because digital libraries should eliminate errors where possible. Some types of common errors include typographical errors, scanning and data conversion errors, and find and replace errors. Errors in metadata can also hinder access in digital libraries. The paper also disc...

  5. Using Metadata Description for Agriculture and Aquaculture Papers

    Directory of Open Access Journals (Sweden)

    P. Šimek, J. Vaněk, V. Očenášek, M. Stočes, T. Vogeltanzova

    2012-12-01

    Full Text Available The paper deals with the most used metadata formats and thesauri suitable for describing scientific and research papers in the domains agriculture, food industry, aquaculture, environment and rural areas. These include the Dublin Core (DC, Metadata Object Description Schema (MODS, Virtual Open Access Agriculture and Aquaculture Repository Metadata Application Profile (VOA3R AP and the AGROVOC thesaurus. Having analyzed the metadata formats and research paper lifecycle, the authors would recommend that each paper should entail metadata description as soon as it is published. The metadata are to describe the content and properties of the paper. One of the most suitable metadata formats is the VOA3R AP that is partially patterned on the DC and combined with the AGROVOC thesaurus. As a result, an effective description, availability and automatic data exchange between and among local and central repositories should be attained.The knowledge and data presented in the present paper were obtained as a result of the following research programs and grant schemes: the Grant No. 20121044 of the Internal Grant Agency titled „Using Automatic Metadata Generation for Research Papers“, the Grant agreement No. 250525 funded by the European Commission corresponding to the VOA3R Project (Virtual Open Access Agriculture & Aquaculture Repository: Sharing Scientific and Scholarly Research related to Agriculture, Food, and Environment, http://voa3r.eu and the Research Program titled „Economy of the Czech Agriculture Resources and their Efficient Use within the Framework of the Multifunctional Agrifood Systems“ of the Czech Ministry of Education, Youth and Sport number VZ MSM 6046070906.

  6. Transforming and enhancing metadata for enduser discovery: a case study

    OpenAIRE

    Edward M. Corrado; Rachel Jaffe

    2014-01-01

    This paper describes the process developed by Binghamton University Libraries to extract embedded metadata from digital photographs and transform it into descriptive Dublin Core metadata for use in the Libraries’ digital preservation system. In 2011, Binghamton University Libraries implemented the Rosetta digital preservation system (from Ex Libris) to preserve digitized and born-digital materials. At the same time, the Libraries’ implemented the Primo discovery tool (from Ex Libris) to br...

  7. Massive Meta-Data: A New Data Mining Resource

    Science.gov (United States)

    Hugo, W.

    2012-04-01

    Worldwide standardisation, and interoperability initiatives such as GBIF, Open Access and GEOSS (to name but three of many) have led to the emergence of interlinked and overlapping meta-data repositories containing, potentially, tens of millions of entries collectively. This forms the backbone of an emerging global scientific data infrastructure that is both driven by changes in the way we work, and opens up new possibilities in management, research, and collaboration. Several initiatives are concentrated on building a generalised, shared, easily available, scalable, and indefinitely preserved scientific data infrastructure to aid future scientific work. This paper deals with the parallel aspect of the meta-data that will be used to support the global scientific data infrastructure. There are obvious practical issues (semantic interoperability and speed of discovery being the most important), but we are here more concerned with some of the less obvious conceptual questions and opportunities: 1. Can we use meta-data to assess, pinpoint, and reduce duplication of meta-data? 2. Can we use it to reduce overlaps of mandates in data portals, research collaborations, and research networks? 3. What possibilities exist for mining the relationships that exist implicitly in very large meta-data collections? 4. Is it possible to define an explicit 'scientific data infrastructure' as a complex, multi-relational network database, that can become self-maintaining and self-organising in true Web 2.0 and 'social networking' fashion? The paper provides a blueprint for a new approach to massive meta-data collections, and how this can be processed using established analysis techniques to answer the questions posed. It assesses the practical implications of working with standard meta-data definitions (such as ISO 19115, Dublin Core, and EML) in a meta-data mining context, and makes recommendations in respect of extension to support self-organising, semantically oriented 'networks of

  8. Grafting as a tool to improve tolerance of vegetables to abiotic stresses : Thermal stress, water stress and organic pollutants

    NARCIS (Netherlands)

    Schwarz, Dietmar; Rouphael, Youssef; Colla, Giuseppe; Venema, Jan Henk

    2010-01-01

    Due to limited availability of arable land and the high market demand for vegetables around the world, cucurbit (cucumber, melon, and watermelon) and solanaceous (eggplant, pepper and tomato) crops are frequently cultivated under unfavourable soil and environmental conditions. These include thermal

  9. Grafting as a tool to improve tolerance of vegetables to abiotic stresses : Thermal stress, water stress and organic pollutants

    NARCIS (Netherlands)

    Schwarz, Dietmar; Rouphael, Youssef; Colla, Giuseppe; Venema, Jan Henk

    2010-01-01

    Due to limited availability of arable land and the high market demand for vegetables around the world, cucurbit (cucumber, melon, and watermelon) and solanaceous (eggplant, pepper and tomato) crops are frequently cultivated under unfavourable soil and environmental conditions. These include thermal

  10. Forensic devices for activism: Metadata tracking and public proof

    Directory of Open Access Journals (Sweden)

    Lonneke van der Velden

    2015-10-01

    Full Text Available The central topic of this paper is a mobile phone application, ‘InformaCam’, which turns metadata from a surveillance risk into a method for the production of public proof. InformaCam allows one to manage and delete metadata from images and videos in order to diminish surveillance risks related to online tracking. Furthermore, it structures and stores the metadata in such a way that the documentary material becomes better accommodated to evidentiary settings, if needed. In this paper I propose InformaCam should be interpreted as a ‘forensic device’. By using the conceptualization of forensics and work on socio-technical devices the paper discusses how InformaCam, through a range of interventions, rearranges metadata into a technology of evidence. InformaCam explicitly recognizes mobile phones as context aware, uses their sensors, and structures metadata in order to facilitate data analysis after images are captured. Through these modifications it invents a form of ‘sensory data forensics'. By treating data in this particular way, surveillance resistance does more than seeking awareness. It becomes engaged with investigatory practices. Considering the extent by which states conduct metadata surveillance, the project can be seen as a timely response to the unequal distribution of power over data.

  11. Forensic devices for activism: Metadata tracking and public proof

    Directory of Open Access Journals (Sweden)

    Lonneke van der Velden

    2015-10-01

    Full Text Available The central topic of this paper is a mobile phone application, ‘InformaCam’, which turns metadata from a surveillance risk into a method for the production of public proof. InformaCam allows one to manage and delete metadata from images and videos in order to diminish surveillance risks related to online tracking. Furthermore, it structures and stores the metadata in such a way that the documentary material becomes better accommodated to evidentiary settings, if needed. In this paper I propose InformaCam should be interpreted as a ‘forensic device’. By using the conceptualization of forensics and work on socio-technical devices the paper discusses how InformaCam, through a range of interventions, rearranges metadata into a technology of evidence. InformaCam explicitly recognizes mobile phones as context aware, uses their sensors, and structures metadata in order to facilitate data analysis after images are captured. Through these modifications it invents a form of ‘sensory data forensics'. By treating data in this particular way, surveillance resistance does more than seeking awareness. It becomes engaged with investigatory practices. Considering the extent by which states conduct metadata surveillance, the project can be seen as a timely response to the unequal distribution of power over data.

  12. Organizing Internet Resources and the Development of Metadata

    Directory of Open Access Journals (Sweden)

    Hsueh-Hua Chen

    1997-12-01

    Full Text Available There exist lots of differences between information resources on the Internet and those in the traditional libraries. In order to retrieve and utilize digital information effectively in the coming era of information network, libraries have to explore how Internet resources are organized. Using search engines and subject gateway services are two common ways to retrieve and utilize Internet resources. Search engines are based on robot to extract metadata, which are automatic and are cheap to create. Subject gateway services add value through intellectual effort, and are correspondingly expensive. But neither approach is complete as users are interested in resources at various levels of granularity and aggregation which may not be satisfied by either of these two simplified approaches. In order to use the Internet resources effectively, the establishment of metadata is very important.This article describes the definitions and functions of metadata, a variety of metadata creators and sources, the different formats of metadata, the level of structure and fullness of metadata, and finally the responses and reactions from people in library field.[Article content in Chinese

  13. Surviving the Transition from FGDC to ISO Metadata Standards

    Science.gov (United States)

    Fox, C. G.; Milan, A.; Sylvester, D.; Habermann, T.; Kozimor, J.; Froehlich, D.

    2008-12-01

    The NOAA Metadata Manager and Repository (NMMR) has served a well established group of data managers at NOAA's National Data Centers for over a decade. It provides a web interface for managing FGDC compliant metadata and publishing that metadata to several large data discovery systems (GeoSpatial One-Stop, NASA's Global Change Master Directory, the Comprehensive Large-Array data Stewardship System, and FirstGov). The Data Center's are now faced with migration of these metadata to new International Metadata Standards (ISO 19115, 19115-2, "). We would like to accomplish this migration while minimizing disruption to the current users and supporting significant new capabilities of the ISO standards. Our current approach involves relational ISO views on top of the existing XML database to convert FGDC content into ISO without changing the data manager interface. These views are the foundation for ISO- compliant XML metadata access via REST-like web services. Additionally, new database tables provide information required by ISO that is not included in the FGDC standard. This approach allows us to support the new standard without disrupting the current system.

  14. A Metadata Schema for Geospatial Resource Discovery Use Cases

    Directory of Open Access Journals (Sweden)

    Darren Hardy

    2014-07-01

    Full Text Available We introduce a metadata schema that focuses on GIS discovery use cases for patrons in a research library setting. Text search, faceted refinement, and spatial search and relevancy are among GeoBlacklight's primary use cases for federated geospatial holdings. The schema supports a variety of GIS data types and enables contextual, collection-oriented discovery applications as well as traditional portal applications. One key limitation of GIS resource discovery is the general lack of normative metadata practices, which has led to a proliferation of metadata schemas and duplicate records. The ISO 19115/19139 and FGDC standards specify metadata formats, but are intricate, lengthy, and not focused on discovery. Moreover, they require sophisticated authoring environments and cataloging expertise. Geographic metadata standards target preservation and quality measure use cases, but they do not provide for simple inter-institutional sharing of metadata for discovery use cases. To this end, our schema reuses elements from Dublin Core and GeoRSS to leverage their normative semantics, community best practices, open-source software implementations, and extensive examples already deployed in discovery contexts such as web search and mapping. Finally, we discuss a Solr implementation of the schema using a "geo" extension to MODS.

  15. Using Metadata to Build Geographic Information Sharing Environment on Internet

    Directory of Open Access Journals (Sweden)

    Chih-hong Sun

    1999-12-01

    Full Text Available Internet provides a convenient environment to share geographic information. Web GIS (Geographic Information System even provides users a direct access environment to geographic databases through Internet. However, the complexity of geographic data makes it difficult for users to understand the real content and the limitation of geographic information. In some cases, users may misuse the geographic data and make wrong decisions. Meanwhile, geographic data are distributed across various government agencies, academic institutes, and private organizations, which make it even more difficult for users to fully understand the content of these complex data. To overcome these difficulties, this research uses metadata as a guiding mechanism for users to fully understand the content and the limitation of geographic data. We introduce three metadata standards commonly used for geographic data and metadata authoring tools available in the US. We also review the current development of geographic metadata standard in Taiwan. Two metadata authoring tools are developed in this research, which will enable users to build their own geographic metadata easily.[Article content in Chinese

  16. Plant science. Biosynthesis, regulation, and domestication of bitterness in cucumber.

    Science.gov (United States)

    Shang, Yi; Ma, Yongshuo; Zhou, Yuan; Zhang, Huimin; Duan, Lixin; Chen, Huiming; Zeng, Jianguo; Zhou, Qian; Wang, Shenhao; Gu, Wenjia; Liu, Min; Ren, Jinwei; Gu, Xingfang; Zhang, Shengping; Wang, Ye; Yasukawa, Ken; Bouwmeester, Harro J; Qi, Xiaoquan; Zhang, Zhonghua; Lucas, William J; Huang, Sanwen

    2014-11-28

    Cucurbitacins are triterpenoids that confer a bitter taste in cucurbits such as cucumber, melon, watermelon, squash, and pumpkin. These compounds discourage most pests on the plant and have also been shown to have antitumor properties. With genomics and biochemistry, we identified nine cucumber genes in the pathway for biosynthesis of cucurbitacin C and elucidated four catalytic steps. We discovered transcription factors Bl (Bitter leaf) and Bt (Bitter fruit) that regulate this pathway in leaves and fruits, respectively. Traces in genomic signatures indicated that selection imposed on Bt during domestication led to derivation of nonbitter cucurbits from their bitter ancestors.

  17. Mechanistic study of programmed cell death of root border cells of cucumber (Cucumber sativus L.) induced by copper.

    Science.gov (United States)

    Sun, Lijuan; Song, Jie; Peng, Cheng; Xu, Chen; Yuan, Xiaofeng; Shi, Jiyan

    2015-12-01

    Programmed cell death (PCD) in root border cells (RBCs) induced by Copper (Cu) has been little studied. This study explored whether Cu induced PCD in RBCs of cucumber or not and investigated the possible mechanisms. The results showed that the percentage of apoptotic and necrotic RBCs increased with increasing concentration of Cu treatment. A quick burst of ROS in RBCs was detected, while mitochondrial membrane potential (ΔΨm) decreased sharply with Cu treatment. Caspase-3 like protease activity showed a tendency of increase with Cu treatment. The potential of Cu to induce PCD in RBCs of cucumber was first proved. Our results showed that ROS generation and mitochondrial membrane potential loss played important roles in Cu-induced caspase-3-like activation and PCD in RBCs of cucumber, which provided new insight into the signaling cascades that modulate Cu phytotoxicity mechanism.

  18. Evolving Metadata in NASA Earth Science Data Systems

    Science.gov (United States)

    Mitchell, A.; Cechini, M. F.; Walter, J.

    2011-12-01

    NASA's Earth Observing System (EOS) is a coordinated series of satellites for long term global observations. NASA's Earth Observing System Data and Information System (EOSDIS) is a petabyte-scale archive of environmental data that supports global climate change research by providing end-to-end services from EOS instrument data collection to science data processing to full access to EOS and other earth science data. On a daily basis, the EOSDIS ingests, processes, archives and distributes over 3 terabytes of data from NASA's Earth Science missions representing over 3500 data products ranging from various types of science disciplines. EOSDIS is currently comprised of 12 discipline specific data centers that are collocated with centers of science discipline expertise. Metadata is used in all aspects of NASA's Earth Science data lifecycle from the initial measurement gathering to the accessing of data products. Missions use metadata in their science data products when describing information such as the instrument/sensor, operational plan, and geographically region. Acting as the curator of the data products, data centers employ metadata for preservation, access and manipulation of data. EOSDIS provides a centralized metadata repository called the Earth Observing System (EOS) ClearingHouse (ECHO) for data discovery and access via a service-oriented-architecture (SOA) between data centers and science data users. ECHO receives inventory metadata from data centers who generate metadata files that complies with the ECHO Metadata Model. NASA's Earth Science Data and Information System (ESDIS) Project established a Tiger Team to study and make recommendations regarding the adoption of the international metadata standard ISO 19115 in EOSDIS. The result was a technical report recommending an evolution of NASA data systems towards a consistent application of ISO 19115 and related standards including the creation of a NASA-specific convention for core ISO 19115 elements. Part of

  19. Automated metadata--final project report

    Energy Technology Data Exchange (ETDEWEB)

    Schissel, David [General Atomics, San Diego, CA (United States)

    2016-04-01

    This report summarizes the work of the Automated Metadata, Provenance Cataloging, and Navigable Interfaces: Ensuring the Usefulness of Extreme-Scale Data Project (MPO Project) funded by the United States Department of Energy (DOE), Offices of Advanced Scientific Computing Research and Fusion Energy Sciences. Initially funded for three years starting in 2012, it was extended for 6 months with additional funding. The project was a collaboration between scientists at General Atomics, Lawrence Berkley National Laboratory (LBNL), and Massachusetts Institute of Technology (MIT). The group leveraged existing computer science technology where possible, and extended or created new capabilities where required. The MPO project was able to successfully create a suite of software tools that can be used by a scientific community to automatically document their scientific workflows. These tools were integrated into workflows for fusion energy and climate research illustrating the general applicability of the project’s toolkit. Feedback was very positive on the project’s toolkit and the value of such automatic workflow documentation to the scientific endeavor.

  20. Automated metadata-final project report

    Energy Technology Data Exchange (ETDEWEB)

    Schissel, David [General Atomics, San Diego, CA (United States)

    2016-04-01

    This report summarizes the work of the Automated Metadata, Provenance Cataloging, and Navigable Interfaces: Ensuring the Usefulness of Extreme-Scale Data Project (MPO Project) funded by the United States Department of Energy (DOE), Offices of Advanced Scientific Computing Research and Fusion Energy Sciences. Initially funded for three years starting in 2012, it was extended for 6 months with additional funding. The project was a collaboration between scientists at General Atomics, Lawrence Berkley National Laboratory (LBNL), and Massachusetts Institute of Technology (MIT). The group leveraged existing computer science technology where possible and extended or created new capabilities where required. The MPO project was able to successfully create a suite of software tools that can be used by a scientific community to automatically document their scientific workflows. These tools were integrated into workflows for fusion energy and climate research illustrating the general applicability of the project’s toolkit. Feedback was very positive on the project’s toolkit and the value of such automatic workflow documentation to the scientific endeavor.

  1. Better Living Through Metadata: Examining Archive Usage

    Science.gov (United States)

    Becker, G.; Winkelman, S.; Rots, A.

    2013-10-01

    The primary purpose of an observatory's archive is to provide access to the data through various interfaces. User interactions with the archive are recorded in server logs, which can be used to answer basic questions like: Who has downloaded dataset X? When did she do this? Which tools did she use? The answers to questions like these fill in patterns of data access (e.g., how many times dataset X has been downloaded in the past three years). Analysis of server logs provides metrics of archive usage and provides feedback on interface use which can be used to guide future interface development. The Chandra X-ray Observatory is fortunate in that a database to track data access and downloads has been continuously recording such transactions for years; however, it is overdue for an update. We will detail changes we hope to effect and the differences the changes may make to our usage metadata picture. We plan to gather more information about the geographic location of users without compromising privacy; create improved archive statistics; and track and assess the impact of web “crawlers” and other scripted access methods on the archive. With the improvements to our download tracking we hope to gain a better understanding of the dissemination of Chandra's data; how effectively it is being done; and perhaps discover ideas for new services.

  2. Educational Rationale Metadata for Learning Objects

    Directory of Open Access Journals (Sweden)

    Tom Carey

    2002-10-01

    Full Text Available Instructors searching for learning objects in online repositories will be guided in their choices by the content of the object, the characteristics of the learners addressed, and the learning process embodied in the object. We report here on a feasibility study for metadata to record process-oriented information about instructional approaches for learning objects, though a set of Educational Rationale [ER] tags which would allow authors to describe the critical elements in their design intent. The prototype ER tags describe activities which have been demonstrated to be of value in learning, and authors select the activities whose support was critical in their design decisions. The prototype ER tag set consists descriptors of the instructional approach used in the design, plus optional sub-elements for Comments, Importance and Features which implement the design intent. The tag set was tested by creators of four learning object modules, three intended for post-secondary learners and one for K-12 students and their families. In each case the creators reported that the ER tag set allowed them to express succinctly the key instructional approaches embedded in their designs. These results confirmed the overall feasibility of the ER tag approach as a means of capturing design intent from creators of learning objects. Much work remains to be done before a usable ER tag set could be specified, including evaluating the impact of ER tags during design to improve instructional quality of learning objects.

  3. Linking ESMF Applications With Data Portals Using Standard Metadata

    Science.gov (United States)

    Dunlap, R.; Chastang, J.; Cinquini, L.; Deluca, C.; Middleton, D.; Murphy, S.; O'Kuinghttons, R.

    2008-12-01

    This talk describes the development of a prototype data portal to support a NCAR Advanced Study Program colloquium entitled Numerical Techniques for Global Atmospheric Models, held in Boulder during July, 2008. The colloquium focused on the comparison of thirteen atmospheric dynamical cores, a key element of next- generation models. Dynamical cores solve the governing equations that describe the properties of the atmosphere over time, including its motion. An efficient, accurate dynamical core is needed to achieve the high spatial resolutions that can improve model fidelity and enable the model to span predictive scales. In support of this event, ESMF, the Earth System Curator project, and the Earth System Grid (ESG) collaborated on the creation of a prototype portal that relies on standardized metadata to directly link datasets generated at the colloquium with information about the model components that generated them. The system offers tools such as dynamically generated comparison tables, faceted search, and trackback pages that link datasets to model configurations. During the colloquium, the metadata describing the dynamical cores was provided by the participants and manually added to the portal. Since then two developments have occurred to facilitate two important steps in the metadata lifecycle: creation of the metadata and ingestion into data archives. First, ESMF has been modified to enable users to output metadata in XML format. Because ESMF data structures already contain information about grids, fields, timestepping, and components, it is natural for ESMF to write out internal information in a standardized way for use by external systems. Second, modifications to the prototype portal were completed this summer to enable XML files output by ESMF to be ingested automatically into the portal. Taken together with the prototype web portal, the new metadata-writing capabilities of ESMF form part of an emerging infrastructure in support of the full modeling

  4. Can Adverse Effects of Acidity and Aluminum Toxicity be Alleviated by Appropriate Rootstock Selection in Cucumber?

    Directory of Open Access Journals (Sweden)

    Youssef Rouphael

    2016-08-01

    Full Text Available Low-pH and aluminium (Al stresses are the major constraints that limit crop yield in acidic soils. Grafting vegetable elite cultivars onto appropriate rootstocks may represent an effective tool to improve crop tolerance to acidity and Al toxicity. Two greenhouse hydroponic experiments were performed to evaluate growth, yield, biomass production, chlorophyll index, electrolyte leakage, mineral composition and assimilate partitioning in plant tissues of cucumber plants (Cucumis sativus L.‘Ekron’ either non-grafted or grafted onto ‘P360’ (Cucurbita maxima Duchesne × Cucurbita moschata Duchesne; E/C or figleaf gourd (Cucurbita ficifolia Bouché; E/F. Cucumber plants were cultured in pots and supplied with nutrient solutions having different pH and Al concentrations: pH 6, pH 3.5, pH 3.5 + 1.5 mM Al and pH 3.5 + 3 mM Al (Exp. 1, 14 d and pH 6, pH 3.5 and pH 3.5 +0.75 mM Al (Exp. 2, 67 d. Significant depression in shoot and root biomass was observed in response to acidity and Al concentrations, with Al-stress being more phytotoxic than low pH treatment. Significant decrease in yield, shoot and root biomass, leaf area, SPAD index, N, K, Ca, Mg, Mn, and B concentration in aerial parts (leaves and stems in response to low pH with more detrimental effects at pH 3.5 + Al. Grafted E/C plants grown under low pH and Al had higher yield, shoot and root biomass compared to E/F and non-grafted plants. This better crop performance of E/C plants in response to Al stress was related to i a reduced translocation of Al from roots to the shoot, ii a better shoot and root nutritional status in K, Ca, Mg, Mn, and Zn concentration, iii a higher chlorophyll synthesis, as well as iv the ability to maintain cell membrane stability and integrity (lower electrolyte leakage. Data provide insight into the role of grafting on Al stress tolerance in cucumber.

  5. Can Adverse Effects of Acidity and Aluminum Toxicity Be Alleviated by Appropriate Rootstock Selection in Cucumber?

    Science.gov (United States)

    Rouphael, Youssef; Rea, Elvira; Cardarelli, Mariateresa; Bitterlich, Michael; Schwarz, Dietmar; Colla, Giuseppe

    2016-01-01

    Low-pH and aluminum (Al) stresses are the major constraints that limit crop yield in acidic soils. Grafting vegetable elite cultivars onto appropriate rootstocks may represent an effective tool to improve crop tolerance to acidity and Al toxicity. Two greenhouse hydroponic experiments were performed to evaluate growth, yield, biomass production, chlorophyll index, electrolyte leakage, mineral composition, and assimilate partitioning in plant tissues of cucumber plants (Cucumis sativus L. "Ekron") either non-grafted or grafted onto "P360" (Cucurbita maxima Duchesne × Cucurbita moschata Duchesne; E/C) or figleaf gourd (Cucurbita ficifolia Bouché; E/F). Cucumber plants were cultured in pots and supplied with nutrient solutions having different pH and Al concentrations: pH 6, pH 3.5, pH 3.5 + 1.5 mM Al, and pH 3.5 + 3 mM Al (Experiment 1, 14 days) and pH 6, pH 3.5, and pH 3.5 + 0.75 mM Al (Experiment 2, 67 days). Significant depression in shoot and root biomass was observed in response to acidity and Al concentrations, with Al-stress being more phytotoxic than low pH treatment. Significant decrease in yield, shoot, and root biomass, leaf area, SPAD index, N, K, Ca, Mg, Mn, and B concentration in aerial parts (leaves and stems) in response to low pH with more detrimental effects at pH 3.5 + Al. Grafted E/C plants grown under low pH and Al had higher yield, shoot, and root biomass compared to E/F and non-grafted plants. This better crop performance of E/C plants in response to Al stress was related to (i) a reduced translocation of Al from roots to the shoot, (ii) a better shoot and root nutritional status in K, Ca, Mg, Mn, and Zn concentration, (iii) a higher chlorophyll synthesis, as well as (iv) the ability to maintain cell membrane stability and integrity (lower electrolyte leakage). Data provide insight into the role of grafting on Al stress tolerance in cucumber.

  6. Survival of Salmonella Newport on Whole and Fresh-Cut Cucumbers Treated with Lytic Bacteriophages.

    Science.gov (United States)

    Sharma, Manan; Dashiell, Gwendolyn; Handy, Eric T; East, Cheryl; Reynnells, Russell; White, Chanelle; Nyarko, Esmond; Micallef, Shirley; Hashem, Fawzy; Millner, Patricia D

    2017-04-01

    Salmonella enterica associated with consumption of cucumbers ( Cucumis sativus ) has led to foodborne outbreaks in the United States. Whole and fresh-cut cucumbers are susceptible to S. enterica contamination during growing, harvesting, and postharvest handling. The application of lytic bacteriophages specific for S. enterica was evaluated to reduce Salmonella populations on cucumbers. Unwaxed cucumbers ('Lisboa' variety, or mini-cucumbers purchased at retail) were inoculated with Salmonella Newport (5 log CFU per cucumber) and were sprayed with 3.2 mL of phosphate-buffered saline (control) or 10 log PFU/ml of SalmoFresh, a Salmonella-specific bacteriophage preparation (phage), to deliver 4.76 × 10(7) PFU/cm(2). Cucumbers were stored at 10 or 22°C for 7 days. Inoculated mini-cucumbers were sliced with a sterile knife to investigate Salmonella transfer to mesocarp, and cut pieces were stored at 4°C for 2 days. Populations (log CFU per cucumber) of Salmonella Newport on phage-treated whole cucumbers were significantly (P cucumbers (4.27 ± 0.37) on day 0. Populations on phage-treated cucumbers stored at 10°C were 1.72 ± 0.77 and 1.56 ± 0.46, which were significantly lower than those on control-treated cucumbers (3.20 ± 0.48 and 2.33 ± 0.25) on days 1 and 4, respectively. Between days 0 and 1, populations on control-treated cucumbers stored at 10 and 22°C declined by 1.07 and 2.47 log CFU per cucumber, respectively. At 22°C, Salmonella Newport populations declined by 2.37 log CFU per cucumber between days 0 and 1. Phage application to whole cucumbers before slicing did not reduce the transfer of Salmonella Newport to fresh-cut slices. Lytic phage application may be a potential intervention to reduce Salmonella populations on whole cucumbers.

  7. Dr. Hadoop: an infinite scalable metadata management for Hadoop How the baby elephant becomes immortal

    Institute of Scientific and Technical Information of China (English)

    Dipayan DEV; Ripon PATGIRI

    2016-01-01

    In this Exa byte scale era, data increases at an exponential rate. This is in turn generating a massive amount of metadata in the file system. Hadoop is the most widely used framework to deal with big data. Due to this growth of huge amount of metadata, however, the efficiency of Hadoop is questioned numerous times by many researchers. Therefore, it is essential to create an efficient and scalable metadata management for Hadoop. Hash-based mapping and subtree partitioning are suitable in distributed metadata management schemes. Subtrce partitioning does not uniformly distribute workload among the metadata servers, and metadata needs to be migrated to keep the load roughly balanced. Hash-based mapping suffers from a constraint on the locality of metadata, though it uniformly distributes the load among NameNodes, which are the metadata servers of Hadoop. In this paper, we present a circular metadata management mechanism named dynamic circular metadata splitting (DCMS). DCMS preserves metadata locality using consistent hashing and locality-preserving hashing, keeps replicated metadata for excellent reliability, and dynamically distributes metadata among the NameNodes to keep load balancing. NameNode is a centralized heart of the Hadoop. Keeping the directory tree of all files, failure of which causes the single point of failure (SPOF). DCMS removes Hadoop's SPOF and provides an efficient and scalable metadata management. The new framework is named 'Dr. Hadoop' after the name of the authors.

  8. Functional compatibility in cucumber mycorrhizas in terms of plant growth performance and foliar nutrient composition.

    Science.gov (United States)

    Ravnskov, S; Larsen, J

    2016-09-01

    Functional compatibility in cucumber mycorrhizas in terms of plant and fungal growth, and foliar nutrient composition from all possible combinations of six cucumber varieties and three species of arbuscular mycorrhizal (AM) fungi was evaluated. Measurements of foliar nutrient composition included N, P, K, Mg, Ca, Na, Fe, Zn, Mn and Cu. Growth of AM fungi was measured in terms of root colonisation, as examined with microscopy and the AM fungus biomarker fatty acid 16:1ω5 from both phospholipids and neutral lipids. Different responses of plant growth and foliar nutrient profiles were observed for the different AM symbioses examined. The AM fungus Claroideoglomus claroideum caused growth depression in association with four out of six cucumber varieties; Rhizophagus irregularis caused growth promotion in one of six cucumber varieties; whereas Funneliformis mosseae had no effect on the growth performance of any of the cucumber varieties examined. All three AM fungi markedly altered host plant shoot nutrient composition, with the strongest contrast observed between cucumber-R. irregularis symbioses and non-mycorrhizal cucumber plants, independent of cucumber variety. On the other hand, AM fungal growth in roots differed between the three AM fungi, but was unaffected by host genotype. Strong build-up of storage lipids was observed for R. irregularis, which was more moderate in the two other AM fungi. In conclusion, strong differential responses of cucumber varieties to inoculation with different AM fungi in terms of growth and shoot nutrient composition revealed high functional diversity in AM symbioses in cucumber plants.

  9. The genome of the cucumber, Cucumis sativus L.

    NARCIS (Netherlands)

    Huang, S.W.; Li, R.Q.; Vossen, van der E.A.G.

    2009-01-01

    Cucumber is an economically important crop as well as a model system for sex determination studies and plant vascular biology. Here we report the draft genome sequence of Cucumis sativus var. sativus L., assembled using a novel combination of traditional Sanger and next-generation Illumina GA sequen

  10. In vitro flowering and pollen viability of cucumber

    Science.gov (United States)

    Flowers were produced on sterile cucumber (Cucumis sativus L.) plants grown in vitro from seed or from micropropagated shoots from stem fragments. Highest numbers of flowers on plants from both sources were produced on hormone-free MS medium as well as with 6 µM of kinetin (MSK). Plants cultured on ...

  11. A sequencing-based linkage map of cucumber

    Science.gov (United States)

    Genetic maps are important tools for molecular breeding, gene cloning, and study of meiotic recombination. In cucumber (Cucumis sativus L.), the marker density, resolution and genome coverage of previously developed genetic maps using PCR-based molecular markers are relatively low. In this study we ...

  12. High sequence conservation among cucumber mosaic virus isolates from Lily

    NARCIS (Netherlands)

    Chen, Y.K.; Derks, A.F.L.M.; Langeveld, S.; Goldbach, R.; Prins, M.

    2001-01-01

    For classification of Cucumber mosaic virus (CMV) isolates from ornamental crops of different geographical areas, these were characterized by comparing the nucleotide sequences of RNAs 4 and the encoded coat proteins. Within the ornamental-infecting CMV viruses both subgroups were represented. CMV i

  13. An integrated genetic and cytogenetic map of the cucumber genome.

    Directory of Open Access Journals (Sweden)

    Yi Ren

    Full Text Available The Cucurbitaceae includes important crops such as cucumber, melon, watermelon, squash and pumpkin. However, few genetic and genomic resources are available for plant improvement. Some cucurbit species such as cucumber have a narrow genetic base, which impedes construction of saturated molecular linkage maps. We report herein the development of highly polymorphic simple sequence repeat (SSR markers originated from whole genome shotgun sequencing and the subsequent construction of a high-density genetic linkage map. This map includes 995 SSRs in seven linkage groups which spans in total 573 cM, and defines approximately 680 recombination breakpoints with an average of 0.58 cM between two markers. These linkage groups were then assigned to seven corresponding chromosomes using fluorescent in situ hybridization (FISH. FISH assays also revealed a chromosomal inversion between Cucumis subspecies [C. sativus var. sativus L. and var. hardwickii (R. Alef], which resulted in marker clustering on the genetic map. A quarter of the mapped markers showed relatively high polymorphism levels among 11 inbred lines of cucumber. Among the 995 markers, 49%, 26% and 22% were conserved in melon, watermelon and pumpkin, respectively. This map will facilitate whole genome sequencing, positional cloning, and molecular breeding in cucumber, and enable the integration of knowledge of gene and trait in cucurbits.

  14. An autonomous robot for harvesting cucumbers in greenhouses

    NARCIS (Netherlands)

    Henten, van E.J.; Hemming, J.; Tuijl, van B.A.J.; Kornet, J.G.; Meuleman, J.; Bontsema, J.; Os, van E.A.

    2002-01-01

    This paper describes the concept of an autonomous robot for harvesting cucumbers in greenhouses. A description is given of the working environment of the robot and the logistics of harvesting. It is stated that for a 2 ha Dutch nursery, 4 harvesting robots and one docking station are needed during t

  15. Rationalization of a genebank cucumber collection with SSR markers

    NARCIS (Netherlands)

    Dooijeweert, van W.; Treuren, van R.

    2012-01-01

    The CGN cucumber (Cucumis sativus) collection consists of 937 accessions. The majority of accessions originated from the working collection of the former Institute for Horticultural Plant Breeding (IVT), where they were used for breeding. The collection mainly includes old cultivars received from Du

  16. Fine mapping of paternal sorting of mitochondria (psm) in cucumber

    Science.gov (United States)

    Cucumber is unique among plants because its mitochondrial DNA shows paternal transmission, is one of the largest known among all plants, due largely to short repetitive DNA motifs, and undergoes recombination among repeats to produce rearranged mitochondrial DNAs associated with strongly mosaic (MSC...

  17. An autonomous robot for harvesting cucumbers in greenhouses

    NARCIS (Netherlands)

    Henten, van E.J.; Hemming, J.; Tuijl, van B.A.J.; Kornet, J.G.; Meuleman, J.; Bontsema, J.; Os, van E.A.

    2002-01-01

    This paper describes the concept of an autonomous robot for harvesting cucumbers in greenhouses. A description is given of the working environment of the robot and the logistics of harvesting. It is stated that for a 2 ha Dutch nursery, 4 harvesting robots and one docking station are needed during t

  18. In vitro auxin binding to cellular membranes of cucumber fruits.

    Science.gov (United States)

    Narayanan, K R; Mudge, K W; Poovaiah, B W

    1981-04-01

    Specific binding of 1-naphthaleneacetic acid (NAA) to crude membrane preparations from cucumber (Cucumis sativus L.) was demonstrated. This in vitro binding had a pH optimum of 3.75 and an equilibrium dissociation constant of 10 to 20 micromolar with 1250 picomoles binding sites per gram fresh weight. The NAA-binding sites were pronase sensitive. The supernatant from the fruit partially inhibited the in vitro NAA binding to fruit membranes. NAA, 2-naphthoxyacetic acid, 3-indoleacetic acid, 2-4-dichlorophenoxyacetic acid, and 2,3,5-triiodobenzoic acid, which are reported to be very good inducers of parthenocarpy in cucumber, showed a high degree of specific binding to cucumber fruit membranes. In comparison, 2-naphthaleneacetic acid and indolepropionic acid, which are reported to be very weak auxins in corn coleoptile, pea stem, and strawberry fruit growth bioassays, did not bind efficiently to cucumber fruit membranes. In vitro binding studies with fruit membranes suggest that auxin stimulated fruit growth may be mediated by membrane-associated, auxin-binding protein(s).

  19. The Effect of Growth Media on Cucumber Yield and its Uptake of Some Nutrient Elements in Soilless Culture

    Directory of Open Access Journals (Sweden)

    N. Alifar

    2010-06-01

    Full Text Available Hydroponic growth systems are expanding due to their advantages such as maximum yield, healthy crop production and reduced labour requirement. Vegetable in each stage of the plant growth needs adequate nutrients in different growing media. The objective of this study was to examine the effect of some growth media on N, K and Mg uptake by greenhouse cucumber. This study was carried out in the research greenhouse of Islamic Azad University-Khorasgan branch, using a completely randomized design with 5 treatments, 4 replications and 10 plants in each replication. The Five different growth media consited of pure cocopeat, perlite-cocopeat (50-50 v/v, perlite-cocopeat-peatmoss (50-20-30 v/v and 50-30-20 and perlite-peatmoss. Physical and chemical properties and some nutrients concentrations such as N, K and Mg as well as fruit yield were examined. Although no significant difference was found among the studied growth media in the fruit yield of cucumber, the highest yield was obtained for cocopeat. Significant difference (P < 0.05 was observed in the plant biomass among the growth media. The highest biomass was obtained for the cocopeat and perlite-cocopeat media. No significant difference was found among the growth media in concentrations of N, K and Mg although the highest concentrations of N and K in the second and third stages of sampling were obtained in cocopeat. Shoot concentration of Mg at the first and second stages of sampling was more than the critical deficiency level. The best concentration of Mg was obtained in cocopeat. In general, the best nutrient concentration and yield were found in cocopeat substrate which can be used as an appropriate growing cucumber media for in soilless culture.

  20. Presettlement Vegetation

    Data.gov (United States)

    Minnesota Department of Natural Resources — Presettlement vegetation of Minnesota based on Marschner's original analysis of Public Land Survey notes and landscape patterns. Marschner compiled his results in...

  1. Proteomic Analysis of Fruit Bending in Cucumber (Cucumis sativus L.)

    Institute of Scientific and Technical Information of China (English)

    WANG Li-li; ZHANG Peng; QIN Zhi-wei; ZHOU Xiu-yan

    2014-01-01

    In cucumber, fruit shape is an important quality criterion, and fruit bending is known to limit growth, yield, and taste. To investigate the post-transcriptional changes that regulate fruit bending and to better understand the underlying molecular mechanisms, we generated a proteomic proifle of the abdomen and back of cucumber bending fruit. Two-dimensional gel electrophoresis (2-DE) allowed the detection of approximately 900 distinct protein spots in each gel, 32 of which were differentially expressed in the abdomen and back of bending cucumber fruit. Ten of the differentially expressed proteins were analyzed using matrix-assisted laser ionization time of lfight mass spectrometry (MALDI-TOF/MS). A search of primary databases showed that the identiifed proteins are involved in various metabolic processes and cellular responses, including photosynthesis metabolism, energy metabolism, defense and stress response, and regulation. The identiifed proteins included large subunits of ribulose-1,5-bisphosphate carboxylase/oxygenase, which are involved in photosynthesis and photorespiratory metabolism, and isocitrate dehydrogenase, which is involved in the tricarboxylic acid cycle. It is possible that imbalances in catabolic and anabolic processes directly affect the bending of cucumber fruit. The predicted function of the cobalamin-independent methionine synthase isozyme is closely related to ethylene biosynthesis; fruit bending may be regulated by ethylene, or by ethylene signaling crosstalk during fruit development. The 14-3-3 protein is usually considered to be a regulation-related protein, which plays a role in regulating cell hyperplasia, cell differentiation during growth, and apoptosis during senescence. Involvement of guanosine triphosphate (GTP)-binding proteins in signal transmission is known to regulate the development of cells in cucumber fruits and to play a role in fruit shape variation. Patterns of protein expression showed high repeatability. We hypothesize

  2. Using XML to encode TMA DES metadata

    Directory of Open Access Journals (Sweden)

    Oliver Lyttleton

    2011-01-01

    Full Text Available Background: The Tissue Microarray Data Exchange Specification (TMA DES is an XML specification for encoding TMA experiment data. While TMA DES data is encoded in XML, the files that describe its syntax, structure, and semantics are not. The DTD format is used to describe the syntax and structure of TMA DES, and the ISO 11179 format is used to define the semantics of TMA DES. However, XML Schema can be used in place of DTDs, and another XML encoded format, RDF, can be used in place of ISO 11179. Encoding all TMA DES data and metadata in XML would simplify the development and usage of programs which validate and parse TMA DES data. XML Schema has advantages over DTDs such as support for data types, and a more powerful means of specifying constraints on data values. An advantage of RDF encoded in XML over ISO 11179 is that XML defines rules for encoding data, whereas ISO 11179 does not. Materials and Methods: We created an XML Schema version of the TMA DES DTD. We wrote a program that converted ISO 11179 definitions to RDF encoded in XML, and used it to convert the TMA DES ISO 11179 definitions to RDF. Results: We validated a sample TMA DES XML file that was supplied with the publication that originally specified TMA DES using our XML Schema. We successfully validated the RDF produced by our ISO 11179 converter with the W3C RDF validation service. Conclusions: All TMA DES data could be encoded using XML, which simplifies its processing. XML Schema allows datatypes and valid value ranges to be specified for CDEs, which enables a wider range of error checking to be performed using XML Schemas than could be performed using DTDs.

  3. Using XML to encode TMA DES metadata.

    Science.gov (United States)

    Lyttleton, Oliver; Wright, Alexander; Treanor, Darren; Lewis, Paul

    2011-01-01

    The Tissue Microarray Data Exchange Specification (TMA DES) is an XML specification for encoding TMA experiment data. While TMA DES data is encoded in XML, the files that describe its syntax, structure, and semantics are not. The DTD format is used to describe the syntax and structure of TMA DES, and the ISO 11179 format is used to define the semantics of TMA DES. However, XML Schema can be used in place of DTDs, and another XML encoded format, RDF, can be used in place of ISO 11179. Encoding all TMA DES data and metadata in XML would simplify the development and usage of programs which validate and parse TMA DES data. XML Schema has advantages over DTDs such as support for data types, and a more powerful means of specifying constraints on data values. An advantage of RDF encoded in XML over ISO 11179 is that XML defines rules for encoding data, whereas ISO 11179 does not. We created an XML Schema version of the TMA DES DTD. We wrote a program that converted ISO 11179 definitions to RDF encoded in XML, and used it to convert the TMA DES ISO 11179 definitions to RDF. We validated a sample TMA DES XML file that was supplied with the publication that originally specified TMA DES using our XML Schema. We successfully validated the RDF produced by our ISO 11179 converter with the W3C RDF validation service. All TMA DES data could be encoded using XML, which simplifies its processing. XML Schema allows datatypes and valid value ranges to be specified for CDEs, which enables a wider range of error checking to be performed using XML Schemas than could be performed using DTDs.

  4. Whole-Genome Resequencing of a Cucumber Chromosome Segment Substitution Line and Its Recurrent Parent to Identify Candidate Genes Governing Powdery Mildew Resistance

    Science.gov (United States)

    Yu, Ting; Xu, Xuewen; Yan, Yali; Qi, Xiaohua; Chen, Xuehao

    2016-01-01

    Cucumber is an economically important vegetable crop worldwide. Powdery mildew (PM) is one of the most severe diseases that can affect cucumber crops. There have been several research efforts to isolate PM resistance genes for breeding PM-resistant cucumber. In the present study, we used a chromosome segment substitution line, SSL508-28, which carried PM resistance genes from the donor parent, JIN5-508, through twelve generations of backcrossing with a PM-susceptible inbred line, D8. We performed whole-genome resequencing of SSL508-28 and D8 to identify single nucleotide polymorphisms (SNPs), and insertions and deletions (indels). When compared against the reference genome of the inbred cucumber line 9930, a total of 468,616 SNPs and 67,259 indels were identified in SSL508-28, and 537,352 SNPs and 91,698 indels were identified in D8. Of these, 3,014 non-synonymous SNPs and 226 frameshift indels in SSL508-28, and 3,104 non-synonymous SNPs and 251 frameshift indels in D8, were identified. Bioinformatics analysis of these variations revealed a total of 15,682 SNPs and 6,262 indels between SSL508-28 and D8, among which 120 non-synonymous SNPs and 30 frameshift indels in 94 genes were detected between SSL508-28 and D8. Finally, out of these 94 genes, five resistance genes with nucleotide-binding sites and leucine-rich repeat domains were selected for qRT-PCR analysis. This revealed an upregulation of two transcripts, Csa2M435460.1 and Csa5M579560.1, in SSL508-28. Furthermore, the results of qRT-PCR analysis of these two genes in ten PM resistant and ten PM susceptible cucumber lines showed that when exposed to PM, Csa2M435460.1 and Csa5M579560.1 exhibited a higher expression level of resistant lines than susceptible lines. This indicates that Csa2M435460.1 and Csa5M579560.1 are candidate genes for PM resistance in cucumber. In addition, the non-synonymous SNPs in Csa2M435460.1 and Csa5M579560.1, identified in SSL508-28 and D8, might be the key to high PM-resistance in

  5. Inactivation of Salmonella on tainted foods: using blue light to disinfect cucumbers and processed meat products.

    Science.gov (United States)

    Guffey, J Stephen; Payne, William C; Motts, Susan D; Towery, Pam; Hobson, Todd; Harrell, Grafton; Meurer, Logan; Lancaster, Kristoffer

    2016-11-01

    Foodborne illness resulting from infectious organisms occurring in vegetables and processed meat is a serious health concern in the United States. Improved and cost-effective techniques for disinfection are needed. Visible light in the blue range (405 nm) was administered to processed meat that had been inoculated with Escherichia coli. One application of light energy at doses of 10, 30, 60, and 100 J/cm(2) was applied, in vitro. In the case of vegetables contaminated with Salmonella (cucumbers), 464 nm light was used at 6, 12, and 18 J/cm(2). In both cases, after 20 hours of incubation, colony-forming units were counted and compared to controls to determine whether the light energy inhibited growth of E. coli or Salmonella. E. coli - 405 nm light at doses of 30, 60, and 100 J/cm(2) were all effective inhibitors of the organism. Kill rates of 75.61 - 96.34% were achieved. Salmonella - 464 nm light at doses of 6, 12, and 18 J/cm(2) produced significant inactivation of the organism. Kill rates of 80.23-100% were obtained. Blue light, delivered in the wavelength/dose combinations used in this study is an effective inhibitor of both E. coli and Salmonella on actual foodstuffs. Blue light should be considered as a potentially effective tool in the effort to protect humans from foodborne illnesses.

  6. Interoperable Solar Data and Metadata via LISIRD 3

    Science.gov (United States)

    Wilson, A.; Lindholm, D. M.; Pankratz, C. K.; Snow, M. A.; Woods, T. N.

    2015-12-01

    LISIRD 3 is a major upgrade of the LASP Interactive Solar Irradiance Data Center (LISIRD), which serves several dozen space based solar irradiance and related data products to the public. Through interactive plots, LISIRD 3 provides data browsing supported by data subsetting and aggregation. Incorporating a semantically enabled metadata repository, LISIRD 3 users see current, vetted, consistent information about the datasets offered. Users can now also search for datasets based on metadata fields such as dataset type and/or spectral or temporal range. This semantic database enables metadata browsing, so users can discover the relationships between datasets, instruments, spacecraft, mission and PI. The database also enables creation and publication of metadata records in a variety of formats, such as SPASE or ISO, making these datasets more discoverable. The database also enables the possibility of a public SPARQL endpoint, making the metadata browsable in an automated fashion. LISIRD 3's data access middleware, LaTiS, provides dynamic, on demand reformatting of data and timestamps, subsetting and aggregation, and other server side functionality via a RESTful OPeNDAP compliant API, enabling interoperability between LASP datasets and many common tools. LISIRD 3's templated front end design, coupled with the uniform data interface offered by LaTiS, allows easy integration of new datasets. Consequently the number and variety of datasets offered by LISIRD has grown to encompass several dozen, with many more to come. This poster will discuss design and implementation of LISIRD 3, including tools used, capabilities enabled, and issues encountered.

  7. The ground truth about metadata and community detection in networks.

    Science.gov (United States)

    Peel, Leto; Larremore, Daniel B; Clauset, Aaron

    2017-05-01

    Across many scientific domains, there is a common need to automatically extract a simplified view or coarse-graining of how a complex system's components interact. This general task is called community detection in networks and is analogous to searching for clusters in independent vector data. It is common to evaluate the performance of community detection algorithms by their ability to find so-called ground truth communities. This works well in synthetic networks with planted communities because these networks' links are formed explicitly based on those known communities. However, there are no planted communities in real-world networks. Instead, it is standard practice to treat some observed discrete-valued node attributes, or metadata, as ground truth. We show that metadata are not the same as ground truth and that treating them as such induces severe theoretical and practical problems. We prove that no algorithm can uniquely solve community detection, and we prove a general No Free Lunch theorem for community detection, which implies that there can be no algorithm that is optimal for all possible community detection tasks. However, community detection remains a powerful tool and node metadata still have value, so a careful exploration of their relationship with network structure can yield insights of genuine worth. We illustrate this point by introducing two statistical techniques that can quantify the relationship between metadata and community structure for a broad class of models. We demonstrate these techniques using both synthetic and real-world networks, and for multiple types of metadata and community structures.

  8. Semantic Representation of Temporal Metadata in a Virtual Observatory

    Science.gov (United States)

    Wang, H.; Rozell, E. A.; West, P.; Zednik, S.; Fox, P. A.

    2011-12-01

    The Virtual Solar-Terrestrial Observatory (VSTO) Portal at vsto.org provides a set of guided workflows to implement use cases designed solar-terrestrial physics and upper atmospheric science. Semantics are used in VSTO to model abstract instrument and parameter classifications, providing data access to users without extended domain specific vocabularies. The temporal restrictions used in the workflows are currently possible via RESTful services made to a remote system with access to a SQL-based metadata catalog. In order to provide a greater range of temporal reasoning and search capabilities for the user, we propose an alternative architecture design for the VSTO Portal, where the temporal metadata is integrated in the domain ontology. We achieve this integration by converting temporal metadata from the headers of raw data files into RDF using the OWL-Time vocabulary. This presentation covers our work with semantic temporal metadata, including: our representation using OWL-Time, issues that we have faced in persistent storage, and performance and scalability of semantic query. We conclude with discussions of the significance semantic temporal metadata has in virtual observatories.

  9. An Investigation of Sensory Specific Satiety and Food Size When Children Consume a Whole or Diced Vegetable.

    Science.gov (United States)

    Goh, Jasmine R; Russell, Catherine G; Liem, Djin G

    2017-07-24

    Children's vegetable consumption is often lower than that needed to promote optimal health and development, and practical approaches for increasing vegetable consumption are needed. Sensory Specific Satiety (SSS) reduces the liking and consumption of a consumed food over the course of an eating occasion and is an important factor in meal termination. The present study aimed to investigate the development of SSS when children ate vegetables of different sizes. The absence of SSS would be an encouraging sign to provide children more vegetables during a meal. Seventy-two children (33 boys, ages 8.8 ± 1.5 years) were recruited from Australian primary schools. Participating children consumed either whole or diced carrots for a maximum period of 10-min from a 500 g box. Cucumber was used as a control vegetable. Children's liking of carrots and cucumber was measured with a 5-point child friendly hedonic scale prior to and after carrot consumption. In comparison to cucumber, liking for neither diced (p = 0.57) nor whole carrots (p = 0.18) changed during ad libitum consumption of carrots, indicating that SSS did not occur. However, children (n = 36) who finished eating carrots within the 10-min time limit, spent more time eating the whole carrots compared to the diced carrots (p whole carrots (p whole carrots than diced carrots. These findings might aid in the development of strategies to promote children's greater vegetable consumption.

  10. Influence of the N/K ratio on the production and quality of cucumber in hydroponic system

    Directory of Open Access Journals (Sweden)

    Adriene Woods Pedrosa

    2011-10-01

    Full Text Available The objective of this work was to evaluate the quality of fruits and the nutritional status of cucumber CV. Aodai cultivated in nutrient solutions with different N:K ratios. The hydroponic cultivation was initially performed, during the vegetative growth, in nutrient solution with 1:2.0 mmol L-1 N:K, and, later, during fruit setting, in four different nutrient solutions with N:K (w/w at the ratios 1:1.4, 1:1.7, 1:2.0 and 1:2.5. An additional treatment with a nutrient solution containing the ratio 1:2.2 (w/w N:K during the vegetative growth and N:K 1:1.4 (w/w during fruit setting, both with 10% ammonium (NH4+ was included. The treatments were arranged in a randomized design with six replicates. Irrigation was carried out with deionized water until seed germination, and then with nutrient solution until 30 days after germination, when plants were transplanted. Plants in the hydroponic growing beds were irrigated with the solutions for vegetative growth, and, after 21 days, the solutions were replaced by solutions for fruit setting. At 45 and 60 days after transplanting, the fresh weight, length, diameter, volume and firmness of the fruit were evaluated, and, at 45 days after transplanting, the macronutrient concentrations in the leaves were determined. The use of different N:K ratios during fruit setting influenced the cucumber production. The ratio of 1.0:1.7 N: K (w/w, with 10% of N in the form of ammonia, is recommended for the whole cycle.

  11. Prevalence of plant beneficial and human pathogenic bacteria isolated from salad vegetables in India.

    Science.gov (United States)

    Nithya, Angamuthu; Babu, Subramanian

    2017-03-14

    The study aimed at enumerating, identifying and categorizing the endophytic cultivable bacterial community in selected salad vegetables (carrot, cucumber, tomato and onion). Vegetable samples were collected from markets of two vegetable hot spot growing areas, during two different crop harvest seasons. Crude and diluted vegetable extracts were plated and the population of endophytic bacteria was assessed based on morphologically distinguishable colonies. The bacterial isolates were identified by growth in selective media, biochemical tests and 16S rRNA gene sequencing. The endophytic population was found to be comparably higher in cucumber and tomato in both of the sampling locations, whereas lower in carrot and onion. Bacterial isolates belonged to 5 classes covering 46 distinct species belonging to 19 genera. Human opportunistic pathogens were predominant in carrot and onion, whereas plant beneficial bacteria dominated in cucumber and tomato. Out of the 104 isolates, 16.25% are human pathogens and 26.5% are human opportunistic pathogens. Existence of a high population of plant beneficial bacteria was found to have suppressed the population of plant and human pathogens. There is a greater potential to study the native endophytic plant beneficial bacteria for developing them as biocontrol agents against human pathogens that are harboured by plants.

  12. Sea cucumber species identification of family Caudinidae from Surabaya based on morphological and mitochondrial DNA evidence

    Science.gov (United States)

    Amin, Muhammad Hilman Fu'adil; Pidada, Ida Bagus Rai; Sugiharto, Widyatmoko, Johan Nuari; Irawan, Bambang

    2016-03-01

    Species identification and taxonomy of sea cucumber remains a challenge problem in some taxa. Caudinidae family of sea cucumber was comerciallized in Surabaya, and it was used as sea cucumber chips. Members of Caudinid sea cucumber have similiar morphology, so it is hard to identify this sea cucumber only from morphological appearance. DNA barcoding is useful method to overcome this problem. The aim of this study was to determine Caudinid specimen of sea cucumber in East Java by morphological and molecular approach. Sample was collected from east coast of Surabaya, then preserved in absolute ethanol. After DNA isolation, Cytochrome Oxydase I (COI) gene amplification was performed using Echinoderm universal primer and PCR product was sequenced. Sequencing result was analyzed and identified in NCBI database using BLAST. Results showed that Caudinid specimen in have closely related to Acaudina molpadioides sequence in GenBank with 86% identity. Morphological data, especially based on ossicle, also showed that the specimen is Acaudina molpadioides.

  13. [Effects of rotation and intercropping on bacterial communities in rhizosphere soil of cucumber].

    Science.gov (United States)

    Wu, Feng-zhi; Wang, Shu; Yang, Yang

    2008-12-01

    By the method of PCR-DGGE, this paper studied the effects of rotation with wheat, soybean, villose vetch, clover, and alfalfa and intercropping with onion and garlic on the bacterial communities in rhizosphere soil of cucumber. The results showed that rotation and intercropping with test plants increased the diversity and evenness indices of bacterial communities in cucumber rhizosphere soil, and also, cucumber yield. The sequencing of DGGE bands indicated that most of the bands had high homology with uncultured bacterial species, and were of Sphingobacterium and Proteobacteria. High bacterium G+C was only detected when cucumber was intercropped with onion. The diversity of soil bacterial communities varied with the growth stages of cucumber, being the highest at vigorous fruiting stage. It was suggested that intercropping with onion and rotation with wheat were the best cultivation modes of cucumber.

  14. Relationship between dieldrin uptake in cucumber and solvent-extractable residue in soil.

    Science.gov (United States)

    Sakai, Mizuki; Seike, Nobuyasu; Murano, Hirotatsu; Otani, Takashi

    2009-12-09

    To prevent the distribution of cucumbers with dieldrin contamination exceeding the limit set by the Japanese Food Sanitation Law, the extraction solvent for dieldrin-contaminated soil was selected prior to cultivation so that the dieldrin residue level in cucumber could be predicted. The exhaustive extraction from soil could not explain the dieldrin uptake by cucumber plants. However, significant correlation (R(2) = 0.966, P dieldrin concentrations in cucumber and dieldrin concentrations extracted with 50% (v/v) methanol-water solution from soils. This was a result of the phytoavailability of dieldrin to the cucumber plants. The extractability of soil dieldrin with the methanol-water solution decreased as the organic carbon content in the soils increased. This suggested that a 50% (v/v) methanol-water solution is the optimal solution for predicting dieldrin concentrations in cucumbers by soil analysis.

  15. Serological and molecular detection of an isolate of Cucumber Mosaic Virus (CMV infecting cucumber (Cucumis sativus and cloning of its coat protein gene

    Directory of Open Access Journals (Sweden)

    Prashant Shetti

    2012-08-01

    Full Text Available Cucumber mosaic virus (CMV is a widely prevalent plant virus infecting important vegetable, plantation and flower crops. Methods for early detection of viruses in plants and vectors transmitting them play a critical role in plant virus disease management. Direct plate and Dot- Enzyme Linked Immunosorbent Assay (ELISA was standardized for detection of CMV. Optimum OD of 1.249 (1.9 ng/μl and 1.242 (1.52 ng/μl was observed in 1:20 and 1:50 dilution of crude and ultrapurified antigen respectively, at a dilution of 1:1000 of both primary and secondary antibody. Polymerase Chain Reaction (PCR using CMV coat protein (CMV CP gene specific primers amplified a 657 base pair (bp fragment, which was then  cloned in pTZ57R/T cloning vector and positive clones were identified by band shift assay and colony PCR. This will aid in developing field diagnostic kits for detection of CMV in different crops and also in developing transgenics with the CP gene. 

  16. A single base substitution in BADH/AMADH is responsible for fragrance in cucumber (Cucumis sativus L.), and development of SNAP markers for the fragrance.

    Science.gov (United States)

    Yundaeng, Chutintorn; Somta, Prakit; Tangphatsornruang, Sithichoke; Chankaew, Sompong; Srinives, Peerasak

    2015-09-01

    Sequence analysis revealed that an SNP (A1855G) in CsBADH of cucumber accession PK2011T202 causes amino acid change in a highly conserved motif, Y163C. Gene mapping showed association between the SNP and the fragrance. Pandan-like fragrance is a value-added trait in several food crops such as rice, vegetable soybean and sorghum. The fragrance is caused by the volatile chemical 2-acetyl-1-pyrroline (2AP). Mutation(s) in betaine aldehyde dehydrogenase 2 (BADH2; also known as aminoaldehyde dehydrogenase 2) gene causes defective BADH2 and results in biosynthesis of 2AP. Recently, cucumber cultivars possessing pandan-like fragrance were discovered in Thailand. In this study, we report an association between CsBADH and the fragrance in cucumber accession "PK2011T202". Gene expression analysis of CsBADH in leaves of PK2011T202 and "301176" (non-fragrant) at various growth stages revealed that CsBADH was expressed in both accessions. Sequence comparison of CsBADH showed that PK2011T202 possesses a single base substitution (A1855G) in exon 5 which causes an amino acid change in a highly conserved motif of BADH, Y163C. Single nucleotide-amplified polymorphism markers were developed to detect the SNP polymorphism between the wild-type and fragrance alleles. Since CsBADH is located on chromosome 1, quantitative trait locus (QTL) mapping was conducted for this chromosome using an F2 and a backcross populations developed from the cross between PK2011T202 and 301176. QTL analysis in both populations showed that the major QTL for fragrance, qFgr, was co-localized with the CsBADH. We concluded that the defect function of CsBADH is responsible for fragrance in cucumber PK2011T202.

  17. Calculation of the convective heat transfer coefficient and thermal diffusivity of cucumbers using numerical simulation and the inverse method.

    Science.gov (United States)

    da Silva, Wilton Pereira; E Silva, Cleide M D P S

    2014-09-01

    Cooling of fruits and vegetables, immediately after the harvest, has been a widely used method for maximizing post-harvest life. In this paper, an optimization algorithm and a numerical solution are used to determine simultaneously the convective heat transfer coefficient, hH, and the thermal diffusivity, α, for an individual solid with cylindrical shape, using experimental data obtained during its cooling. To this end, the one-dimensional diffusion equation in cylindrical coordinates is discretized and numerically solved through the finite volume method, with a fully implicit formulation. This solution is coupled to an optimizer based on the inverse method, in which the chi-square referring to the fit of the numerical simulation to the experimental data is used as objective function. The optimizer coupled to the numerical solution was applied to experimental data relative to the cooling of a cucumber. The obtained results for α and hH were coherent with the values available in the literature. With the results obtained in the optimization process, the cooling kinetics of cucumbers was described in details.

  18. Research on metadata in manufacturing-oriented EAI

    Institute of Scientific and Technical Information of China (English)

    Wang Rui; Li Congxin

    2007-01-01

    Enterprise application integration (EAI) focuses on the collaboration and interconnection of various information systems, so the basic problem to be solved is how EAI guarantees that the applications will produce consistent presentation of data, message and transaction.The metadata methodology may give us certain good ideas.First, the metadata description method of manufacturing information resource, transaction process and message delivery is put forward on the basis of operation analysis of manufacturing-oriented EAI, and then the tree-structured XML schema of corresponding object is built and a framework of metadata application in the discrete Manufacturing-Oriented EAI is established.Finally, a practical enterprise information integration system in Shanghai Tobacco Machine Co., Ltd.is presented as an example to show how it functions.

  19. Meta-Data Objects as the Basis for System Evolution

    CERN Document Server

    Estrella, Florida; Tóth, N; Kovács, Z; Le Goff, J M; Clatchey, Richard Mc; Toth, Norbert; Kovacs, Zsolt; Goff, Jean-Marie Le

    2001-01-01

    One of the main factors driving object-oriented software development in the Web- age is the need for systems to evolve as user requirements change. A crucial factor in the creation of adaptable systems dealing with changing requirements is the suitability of the underlying technology in allowing the evolution of the system. A reflective system utilizes an open architecture where implicit system aspects are reified to become explicit first-class (meta-data) objects. These implicit system aspects are often fundamental structures which are inaccessible and immutable, and their reification as meta-data objects can serve as the basis for changes and extensions to the system, making it self- describing. To address the evolvability issue, this paper proposes a reflective architecture based on two orthogonal abstractions - model abstraction and information abstraction. In this architecture the modeling abstractions allow for the separation of the description meta-data from the system aspects they represent so that th...

  20. A Generic Metadata Editor Supporting System Using Drupal CMS

    Science.gov (United States)

    Pan, J.; Banks, N. G.; Leggott, M.

    2011-12-01

    Metadata handling is a key factor in preserving and reusing scientific data. In recent years, standardized structural metadata has become widely used in Geoscience communities. However, there exist many different standards in Geosciences, such as the current version of the Federal Geographic Data Committee's Content Standard for Digital Geospatial Metadata (FGDC CSDGM), the Ecological Markup Language (EML), the Geography Markup Language (GML), and the emerging ISO 19115 and related standards. In addition, there are many different subsets within the Geoscience subdomain such as the Biological Profile of the FGDC (CSDGM), or for geopolitical regions, such as the European Profile or the North American Profile in the ISO standards. It is therefore desirable to have a software foundation to support metadata creation and editing for multiple standards and profiles, without re-inventing the wheels. We have developed a software module as a generic, flexible software system to do just that: to facilitate the support for multiple metadata standards and profiles. The software consists of a set of modules for the Drupal Content Management System (CMS), with minimal inter-dependencies to other Drupal modules. There are two steps in using the system's metadata functions. First, an administrator can use the system to design a user form, based on an XML schema and its instances. The form definition is named and stored in the Drupal database as a XML blob content. Second, users in an editor role can then use the persisted XML definition to render an actual metadata entry form, for creating or editing a metadata record. Behind the scenes, the form definition XML is transformed into a PHP array, which is then rendered via Drupal Form API. When the form is submitted the posted values are used to modify a metadata record. Drupal hooks can be used to perform custom processing on metadata record before and after submission. It is trivial to store the metadata record as an actual XML file

  1. Metadata for fine-grained processing at ATLAS

    CERN Document Server

    Cranshaw, Jack; The ATLAS collaboration

    2016-01-01

    High energy physics experiments are implementing highly parallel solutions for event processing on resources that support concurrency at multiple levels. These range from the inherent large-scale parallelism of HPC resources to the multiprocessing and multithreading needed for effective use of multi-core and GPU-augmented nodes. Such modes of processing, and the efficient opportunistic use of transiently-available resources, lead to finer-grained processing of event data. Previously metadata systems were tailored to jobs that were atomic and processed large, well-defined units of data. The new environment requires a more fine-grained approach to metadata handling, especially with regard to bookkeeping. For opportunistic resources metadata propagation needs to work even if individual jobs are not finalized. This contribution describes ATLAS solutions to this problem in the context of the multiprocessing framework currently in use for LHC Run 2, development underway for the ATLAS multithreaded framework (Athena...

  2. Progresses in the Mechanism of Resistance to Fusarium Wilt in Cucumber(Cucumis sativus L.)

    Institute of Scientific and Technical Information of China (English)

    ZHOU Xingang; WU Fengzhi; WANG Xuezheng; YUAN Ye

    2008-01-01

    Fusarium wilt caused by Fusarium oxysporum f.sp.cucumerinum (Owen) is one of the most devastating diseases in cucumber production worldwide.Recent progresses in the mechanism of resistance to Fusarium wilt in cucumber were reviewed in this paper,including pathogenic mechanism of Fusarium oxysporum,the resistance mechanism of cucumber,the heredity of resistance,and the location of resistance genes.Following works should be the location and cloning of resistance genes with molecular biologic methods.

  3. Biological control mechanisms of D-pinitol against powdery mildew in cucumber

    OpenAIRE

    Chen, J; Fernandez, Diana; Wang, D. D.; Chen, Y. J.; Dai, G. H.

    2014-01-01

    D-pinitol is an effective agent for controlling powdery mildew (Podosphaera xanthii) in cucumber. In this study, we determined the mechanisms of D-pinitol in controlling powdery mildew in cucumber plants. We compared P. xanthii development on cucumber leaf surface treated with D-pinitol or water (2 mg ml(-1)) at different time points after inoculation. The germinating conidia, hyphae, and conidiophores of the pathogen were severely damaged by D-pinitol at any time of application tested. The h...

  4. Using URIs to effectively transmit sensor data and metadata

    Science.gov (United States)

    Kokkinaki, Alexandra; Buck, Justin; Darroch, Louise; Gardner, Thomas

    2017-04-01

    Autonomous ocean observation is massively increasing the number of sensors in the ocean. Accordingly, the continuing increase in datasets produced, makes selecting sensors that are fit for purpose a growing challenge. Decision making on selecting quality sensor data, is based on the sensor's metadata, i.e. manufacturer specifications, history of calibrations etc. The Open Geospatial Consortium (OGC) has developed the Sensor Web Enablement (SWE) standards to facilitate integration and interoperability of sensor data and metadata. The World Wide Web Consortium (W3C) Semantic Web technologies enable machine comprehensibility promoting sophisticated linking and processing of data published on the web. Linking the sensor's data and metadata according to the above-mentioned standards can yield practical difficulties, because of internal hardware bandwidth restrictions and a requirement to constrain data transmission costs. Our approach addresses these practical difficulties by uniquely identifying sensor and platform models and instances through URIs, which resolve via content negotiation to either OGC's sensor meta language, sensorML or W3C's Linked Data. Data transmitted by a sensor incorporate the sensor's unique URI to refer to its metadata. Sensor and platform model URIs and descriptions are created and hosted by the British Oceanographic Data Centre (BODC) linked systems service. The sensor owner creates the sensor and platform instance URIs prior and during sensor deployment, through an updatable web form, the Sensor Instance Form (SIF). SIF enables model and instance URI association but also platform and sensor linking. The use of URIs, which are dynamically generated through the SIF, offers both practical and economical benefits to the implementation of SWE and Linked Data standards in near real time systems. Data can be linked to metadata dynamically in-situ while saving on the costs associated to the transmission of long metadata descriptions. The transmission

  5. Linked data for libraries, archives and museums how to clean, link and publish your metadata

    CERN Document Server

    Hooland, Seth van

    2014-01-01

    This highly practical handbook teaches you how to unlock the value of your existing metadata through cleaning, reconciliation, enrichment and linking and how to streamline the process of new metadata creation. Libraries, archives and museums are facing up to the challenge of providing access to fast growing collections whilst managing cuts to budgets. Key to this is the creation, linking and publishing of good quality metadata as Linked Data that will allow their collections to be discovered, accessed and disseminated in a sustainable manner. This highly practical handbook teaches you how to unlock the value of your existing metadata through cleaning, reconciliation, enrichment and linking and how to streamline the process of new metadata creation. Metadata experts Seth van Hooland and Ruben Verborgh introduce the key concepts of metadata standards and Linked Data and how they can be practically applied to existing metadata, giving readers the tools and understanding to achieve maximum results with limited re...

  6. A new distributional record for the sea cucumber Holothuria (Semperothuria) cinerascens (Brandt) from Goa coast

    Digital Repository Service at National Institute of Oceanography (India)

    Shirwaikar, P.; Parulekar, A.H.

    Occurrence of sea cucumber, Holothuria (Semperothuria) cinerascens from intertidal region of Anjuna (Goa) along central west coast of India is reported. Notes on morphological characteristics are given...

  7. Whole-body Microbiota of Sea Cucumber (Apostichopus japonicus) from South Korea for Improved Seafood Management.

    Science.gov (United States)

    Kim, Tae-Yoon; Lee, Jin-Jae; Kim, Bong-Soo; Choi, Sang Ho

    2017-08-31

    Sea cucumber (Apostichopus japonicus) is a popular seafood source in Asia, including South Korea, and its consumption has recently increased with recognition of its medicinal properties. However, because raw sea cucumber contains various microbes, its ingestion can cause foodborne illness. Therefore, analysis of the microbiota in the whole body of sea cucumber can extend our understanding of foodborne illness caused by microorganisms and help to better manage products. We collected 40 sea cucumbers from four different sites in August and November, which are known as the maximum production areas in Korea. The microbiota was analyzed by an Illumina Miseq system, and bacterial amounts were quantified by real-time PCR. The diversity and bacterial amounts in sea cucumber were higher in August than in November. Alpha-, Beta-, and Gammaproteobacteria were common dominant classes in all samples. However, the microbiota composition differed according to sampling time and site. Staphylococcus warneri and Propionibacterium acnes were commonly detected potential pathogens in August and November samples, respectively. The effect of experimental Vibrio parahaemolyticus infection on the indigenous microbiota of sea cucumber was analyzed at different temperatures, revealing clear alterations of Psychrobacter and Moraxella; thus, these shifts can be used as indicators for monitoring infection of sea cucumber. Although further studies are needed to clarify and understand the virulence and mechanisms of the identified pathogens of sea cucumber, our study provides a valuable reference for determining the potential of foodborne illness caused by sea cucumber ingestion and to develop monitoring strategies of products using microbiota information.

  8. Research and establishment of enterprise quality metadata standard

    Institute of Scientific and Technical Information of China (English)

    Jie LI; Genbao ZHANG; Han SONG

    2008-01-01

    Enabling quality managers to utilize and manage quality data efficiently under modern quality management circumstances is a primary issue for improving enterprise quality management. A concept of quality metadata is proposed in this paper, which can help quality managers gain a deeper understanding of various features of quality data and establish a more stable foundation for further use and management of such data. The procedure of establishing quality meta-data standards is emphasized in the paper, and the content structure and description scheme are given. Finally, a summary is made and future work is prospected.

  9. The status of Cucumber vein yellowing virus in Iran

    Directory of Open Access Journals (Sweden)

    Kaveh BANANEJ

    2014-09-01

    Full Text Available Yellowing symptoms of greenhouse- and open field-grown cucurbit crops are becoming increasingly important in many cucurbit growing regions of the world, and particularly in Iran. A survey was conducted from 2011 to 2012 in eight major cucurbit growing regions in Iran. Yellowing and specifically vein clearing symptoms were observed in many cucumber plants grown in greenhouses and open fields, suggesting the presence of Cucumber vein yellowing virus (CVYV, genus Ipomovirus, family Potyviridae. The identification of CVYV was carried out with a specific triple-antibody sandwich enzyme-linked immunosorbent assay (TAS-ELISA and reverse transcription (RT-PCR. CVYV was detected in 42% of the collected samples, in all surveyed provinces, except Bushehr. CVYV was also detected in melon and cucumber crops grown in open fields. These results indicate that CVYV is widely distributed on these two cucurbit species in the major cucumber growing areas of Iran. CVYV positive samples were also tested, using DAS-ELISA, for the presence of Cucurbit chlorotic yellows virus (CCYV and Cucurbit yellow stunting disorder virus (CYSDV, two criniviruses reported previously to occur in Iran. Double or triple infections of CCYV and CYSDV occurred in 49 of 166 of the CVYV-infected plants. The CVYV and CCYV combined infections were more prevalent than CVYV and CYSDV combined infections. TAS-ELISA positive samples were used to mechanically inoculate healthy cucumber plants, and mild vein yellowing was observed on the inoculated leaves. Identical symptoms were also observed on whitefly inoculated healthy cucumber plants. The presence of CVYV in mechanically and whitefly inoculated plants was confirmed by TAS-ELISA and RT-PCR. Sequence analysis revealed that the Iranian isolate of CVYV was more closely related to Spanish isolates than to isolates from Jordan. Phylogenetic analysis showed that CVYV isolates can be divided into two phylogenetic groups (I and II. Despite the close

  10. openPDS: Protecting the Privacy of Metadata through SafeAnswers

    OpenAIRE

    2014-01-01

    The rise of smartphones and web services made possible the large-scale collection of personal metadata. Information about individuals' location, phone call logs, or web-searches, is collected and used intensively by organizations and big data researchers. Metadata has however yet to realize its full potential. Privacy and legal concerns, as well as the lack of technical solutions for personal metadata management is preventing metadata from being shared and reconciled under the control of the ...

  11. BrainBank Metadata Specification for the Human Brain Project and Neuroinformatics

    OpenAIRE

    Lianglin, Hu; Yufang, Hou; Jianhui, Li; Ling, Yin; Wenwen, Shi

    2007-01-01

    Many databases and platforms for human brain data have been established in China over the years, and metadata plays an important role in understanding and using them. The BrainBank Metadata Specification for the Human Brain Project and Neuroinformatics provides a structure for describing the context and content information of BrainBank databases and services. It includes six parts: identification, method, data schema, distribution of the database, metadata extension, and metadata reference Th...

  12. Vegetable Agroforestry and Cashew-Cacao Systems in Vietnam

    OpenAIRE

    Thanh Ha, D. (ed.); Du, L; Thanh Loan, L.; Loi, N. Kim (ed.); Duc Thanh, N. (ed.); Duc Phuoc, P. H. (ed.); Midmore, D.; Catacutan, D.; Palada, M.; M. Reyes; Cajilig, R. (ed.); Kunta, K. (ed.); Sombatpanit, S. (ed.)

    2011-01-01

    Metadata only record This book is part of a four-book series that details the research conducted by the Nong Lam University research team concerning the addition of cacao to cashew farming systems in Vietnam. Eight cacao varieties were tested on farmer-owned cashew plantations and had promising results that showed that cacao grew exceptionally well under the cashew canopy, and will be profitable to farmers. These ecologically-sound, integrated vegetable agroforestry systems were developed ...

  13. SCREENING FOR CUCUMBER MOSAIC RESISTANT LINES FROM THE OVULE CULTURE DERIVED DOUBLE HAPLOID CUCUMBERS

    Directory of Open Access Journals (Sweden)

    Parichat Plapung

    2014-01-01

    Full Text Available CMV is one of the major destructive viruses worldwide and commercial CMV resistant cucumber is very rare. Therefore we aimed to establish the ovule derived resistant lines used for the breeding program. Haploid plants of sixty-eight cucumber lines were successfully obtained by culturing the un pollinated ovaries harvested one day before an thesis on a modified MS medium supplemented with BAP and IAA at the ratio of 2:1 which was optimal to induce embryogenesis in most of the tested lines. For whole plant regeneration, another modified MS medium was used supplemented with a combination of 6-Benzylaminopurine (BAP and Indole-3-Acetic Acid (IAA (2:1 or BAP and IAA/6-(gamma, gamma-dimethylallylamino purine (2ip and IAA (5:1 and 5 ppm AgNO3. Ploidy levels of the regenerants were determined by cytological analysis. Thirteen out of 42 clones derived from 14 accessions showed a chromosome number of n = 7 and chloroplast number of 6/pair of guard cell, 24 lines were auto-dihaploid with n = 14 and a chloroplast number of 11-12/pair of guard cell. Twenty-eight Double Haploid (DH lines were mechanically inoculated with CMV and the level of resistance was evaluated by using DAS-ELISA. Ten highly Resistant lines (R included 70S2, 91e, 91.1, 93S4-1, 93S42-, 95S1-2, 95S2 DHS1, 117S2-1-3, 136.1 and 194S1 did not show any virus symptom and gave negative ELISA results. Twelve moderately resistant clones were identified including two clones from line 11, three clones from line 93, four clones from line 91 and one clone each from line 117S2 and 123, whereas clone 11.4 was moderately susceptible. Five DH clones; 117S2-1-1, 117S2-2, 117S2-4, 117S2-7 and 117S2-8were classified as highly susceptible.

  14. Metadata squared: enhancing its usability for volunteered geographic information and the GeoWeb

    Science.gov (United States)

    Poore, Barbara S.; Wolf, Eric B.; Sui, Daniel Z.; Elwood, Sarah; Goodchild, Michael F.

    2013-01-01

    The Internet has brought many changes to the way geographic information is created and shared. One aspect that has not changed is metadata. Static spatial data quality descriptions were standardized in the mid-1990s and cannot accommodate the current climate of data creation where nonexperts are using mobile phones and other location-based devices on a continuous basis to contribute data to Internet mapping platforms. The usability of standard geospatial metadata is being questioned by academics and neogeographers alike. This chapter analyzes current discussions of metadata to demonstrate how the media shift that is occurring has affected requirements for metadata. Two case studies of metadata use are presented—online sharing of environmental information through a regional spatial data infrastructure in the early 2000s, and new types of metadata that are being used today in OpenStreetMap, a map of the world created entirely by volunteers. Changes in metadata requirements are examined for usability, the ease with which metadata supports coproduction of data by communities of users, how metadata enhances findability, and how the relationship between metadata and data has changed. We argue that traditional metadata associated with spatial data infrastructures is inadequate and suggest several research avenues to make this type of metadata more interactive and effective in the GeoWeb.

  15. Understanding the Protocol for Metadata Harvesting of the Open Archives Initiative.

    Science.gov (United States)

    Breeding, Marshall

    2002-01-01

    Explains the Open Archives Initiative (OAI) Protocol for Metadata Harvesting and its impact on digital libraries and information retrieval by transferring metadata from one server to another in a network of information systems. Highlights include data providers; service providers; value-added services; Dublin Core metadata; data transfer;…

  16. Kuchler Vegetation

    Data.gov (United States)

    California Department of Resources — Digital version of potential natural plant communites as compiled and published on 'Map of the Natural Vegetation of California' by A. W. Kuchler, 1976. Source map...

  17. Wieslander Vegetation

    Data.gov (United States)

    California Department of Resources — Digital version of the 1945 California Vegetation Type Maps by A. E. Wieslander of the U.S. Forest Service. Source scale of maps are 1:100,000. These compiled maps...

  18. [Effects of strong reductive approach on remediation of degraded facility vegetable soil].

    Science.gov (United States)

    Zhu, Tong-Bin; Meng, Tian-Zhu; Zhang, Jin-Bo; Cai, Zu-Cong

    2013-09-01

    High application rate of chemical fertilizers and unreasonable rotation in facility vegetable cultivation can easily induce the occurrence of soil acidification, salinization, and serious soil-borne diseases, while to quickly and effectively remediate the degraded facility vegetable soil can considerably increase vegetable yield and farmers' income. In this paper, a degraded facility vegetable soil was amended with 0, 3.75, 7.50, and 11.3 t C x hm(-2) of air-dried alfalfa and flooded for 31 days to establish a strong reductive environment, with the variations of soil physical and chemical properties and the cucumber yield studied. Under the reductive condition, soil Eh dropped quickly below 0 mV, accumulated soil NO3(-) was effectively eliminated, soil pH was significantly raised, and soil EC was lowered, being more evident in higher alfalfa input treatments. After treated with the strong reductive approach, the cucumber yield in the facility vegetable field reached 53.3-57.9 t x hm(-2), being significantly higher than that in un-treated facility vegetable field in last growth season (10.8 t x hm(-2)). It was suggested that strong reductive approach could effectively remediate the degraded facility vegetable soil in a short term.

  19. Cucumber (Cucumis sativus L.) and kabocha squash (Cucurbita moschata Duch).

    Science.gov (United States)

    Nanasato, Yoshihiko; Tabei, Yutaka

    2015-01-01

    We established improved methods for Agrobacterium-mediated transformation of cucumber (Cucumis sativus L.) and kabocha squash (Cucurbita moschata Duch). Vacuum infiltration of cotyledonary explants with Agrobacterium suspension enhanced the Agrobacterium infection efficiency in the proximal regions of explants. Wounding treatment was also essential for kabocha squash. Cocultivation on filter paper wicks suppressed necrosis of explants, keeping regeneration efficacy. Putative transgenic plants were screened by kanamycin resistance and green fluorescent protein (GFP) fluorescence. These putative transgenic plants grew normally and T1 seeds were obtained, and stable integration and transmission of the transgene in T1 generations were confirmed by Southern hybridization and PCR. The average transgenic efficiency for cucumber and kabocha squash was 11.9 ± 3.5 and 9.2 ± 2.9 %, respectively.

  20. Variation of Plant Electrophysiology in Cucumber under Different Water Status

    Institute of Scientific and Technical Information of China (English)

    LI Guo-chen; YU Hai-ye; MA Cheng-lin; WANG Rui

    2005-01-01

    AP and VP were measured in cucumbers under water sufficiency and water stress. The results indicated that, the AP would be evoked by electrical impulse, for water-stressed cucumber, its amplitude could reached more than 40 mV which was obviously greater than that (about 10-20 mV) of plant under well-watered,and no VP came out. Along with the intensity of light increased, the VP appeared going-up trend, and accompanied by evidently spiking electrical signal, for plant under water stress, the VP increased more clearly, but the change of spiking amplitude of AP (about 3 mY) was rather smaller than that (8-10 mY) of plant under well-watered.

  1. Silicon-mediated accumulation of flavonoid phytoalexins in cucumber.

    Science.gov (United States)

    Fawe, A; Abou-Zaid, M; Menzies, J G; Bélanger, R R

    1998-05-01

    ABSTRACT The controversial role of silicon in plant disease resistance, described mostly as a passive mechanical protection, has been addressed. Conclusive evidence is presented that silicon is involved in the increased resistance of cucumber to powdery mildew by enhancing the antifungal activity of infected leaves. This antifungal activity was attributable to the presence of low-molecular-weight metabolites. One of these metabolites, described here as a phytoalexin, was identified as a flavonol aglycone rhamnetin (3,5,3',4'-tetrahydroxy-7-O-methoxyflavone). This is the first report of a phytoalexin for this chemical group in the plant kingdom and of a flavonol phytoalexin in cucumber, a chemical defense long believed to be nonexistent in the family Cucurbitaceae. The antifungal activity of leaf extracts was better expressed after acid hydrolysis, extending to another plant species the concept that some phytoalexins are synthesized as glycosylated phytoalexins or their precursors.

  2. Relationship between Seed Germination Capacity of 10 Species of Vegetables and their Emergence in the Field

    OpenAIRE

    Tomasz W. BRALEWSKI; Roman HOLUBOWICZ

    2008-01-01

    In the years 2001-2003, research was carried out to determine to what extent seed germination capacity of selected vegetable species indicates their field emergence potential. The experiment included 10 species: white head cabbage, garden carrot, red beet, onion, cucumber, tomato, radish, head lettuce, snap dwarf bean and garden pea. The seeds came from 4 commercial seed companies operating on the Polish market. The seeds of red beet and radish from different seed companies had different germ...

  3. Layered numerical simulation and heat transfer characteristic analysis on cold shock treatment of cucumber%黄瓜冷激处理过程分层数值模拟与传热特性分析

    Institute of Scientific and Technical Information of China (English)

    陈爱强; 杨昭; 张娜; 赵松松; 陈明峰

    2015-01-01

    Cold shock treatment has been extensively studied as an effective physical treatment method to improve the storage quality of fruits and vegetables because of environmental benefit. To simulate cold shock treatment and study the heat transfer characteristics of cylindrical postharvest fruits and vegetables in those processes, a heat transfer model was proposed based on the structural features of fruits and vegetables in present study. The cucumber tissue was divided into three layers according to the structural characteristics, and thermophysical properties of each layer were also measured. Cold shock treatment of cucumber with 0℃ cold water was conducted in a constant temperature tank designed by the authors. The measured temperatures of the cucumber tissue at the center, two-fifths of the radius and four-fifths of the radius from the center of fruits during water cooling were compared against the results obtained from the simulation by the model. The maximum error between simulated and measured temperatures was 1.713℃, and the mean errors at the center, two-fifths of the radius and four-fifths of the radius form the center of the cucumber were 0.423, 0.377 and 0.842℃, respectively. The comparison analysis showed that the simulation results were in good agreement with the measured values, which indicated the reliability of the model. Using the validated model, the cold shock processes of the cucumbers with chilled air and cold water were simulated, and the effects of flow velocity of medium, fruit size and thermophysical property difference inside the cucumber on the heat transfer process were also analyzed. Results showed that, when cold shock treatment was conducted with cold water at 0℃, the cooling rate of cucumber tissue was faster, and it caused a shorter required duration and larger temperature gradient along the radius of the cucumber, which resulted that the chilling stress experienced by outside tissue was longer than that experienced by inside

  4. Spatial Metadata in Africa and the Middle East

    CSIR Research Space (South Africa)

    Cooper, Antony K

    2005-01-01

    Full Text Available This chapter attempts to paint a broad picture of the spatial metadata in Africa and the Middle East, through describing briefly the activities in countries and regional bodies across the region and providing more detail in one or two countries...

  5. Competence Based Educational Metadata for Supporting Lifelong Competence Development Programmes

    NARCIS (Netherlands)

    Sampson, Demetrios; Fytros, Demetrios

    2008-01-01

    Sampson, D., & Fytros, D. (2008). Competence Based Educational Metadata for Supporting Lifelong Competence Development Programmes. In P. Diaz, Kinshuk, I. Aedo & E. Mora (Eds.), Proceedings of the 8th IEEE International Conference on Advanced Learning Technologies (ICALT 2008), pp. 288-292. July, 1-

  6. Metadata Harvesting in Regional Digital Libraries in the PIONIER Network

    Science.gov (United States)

    Mazurek, Cezary; Stroinski, Maciej; Werla, Marcin; Weglarz, Jan

    2006-01-01

    Purpose: The paper aims to present the concept of the functionality of metadata harvesting for regional digital libraries, based on the OAI-PMH protocol. This functionality is a part of regional digital libraries platform created in Poland. The platform was required to reach one of main objectives of the Polish PIONIER Programme--to enrich the…

  7. Home | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available f use, or is not downloadable, it may not be fully used, cited or rightly acknowledged by the (research) com... supports further contribution of each research to life science. Export All Metadata CSV Format JSON Format ...titute of Agrobiological Sciences Junichi Yonemaru QTL Rice The database of Rice QTL information extracted from published research

  8. Automatic Extraction of Metadata from Scientific Publications for CRIS Systems

    Science.gov (United States)

    Kovacevic, Aleksandar; Ivanovic, Dragan; Milosavljevic, Branko; Konjovic, Zora; Surla, Dusan

    2011-01-01

    Purpose: The aim of this paper is to develop a system for automatic extraction of metadata from scientific papers in PDF format for the information system for monitoring the scientific research activity of the University of Novi Sad (CRIS UNS). Design/methodology/approach: The system is based on machine learning and performs automatic extraction…

  9. Web Video Mining: Metadata Predictive Analysis using Classification Techniques

    Directory of Open Access Journals (Sweden)

    Siddu P. Algur

    2016-02-01

    Full Text Available Now a days, the Data Engineering becoming emerging trend to discover knowledge from web audiovisual data such as- YouTube videos, Yahoo Screen, Face Book videos etc. Different categories of web video are being shared on such social websites and are being used by the billions of users all over the world. The uploaded web videos will have different kind of metadata as attribute information of the video data. The metadata attributes defines the contents and features/characteristics of the web videos conceptually. Hence, accomplishing web video mining by extracting features of web videos in terms of metadata is a challenging task. In this work, effective attempts are made to classify and predict the metadata features of web videos such as length of the web videos, number of comments of the web videos, ratings information and view counts of the web videos using data mining algorithms such as Decision tree J48 and navie Bayesian algorithms as a part of web video mining. The results of Decision tree J48 and navie Bayesian classification models are analyzed and compared as a step in the process of knowledge discovery from web videos.

  10. Metadata Harvesting in Regional Digital Libraries in the PIONIER Network

    Science.gov (United States)

    Mazurek, Cezary; Stroinski, Maciej; Werla, Marcin; Weglarz, Jan

    2006-01-01

    Purpose: The paper aims to present the concept of the functionality of metadata harvesting for regional digital libraries, based on the OAI-PMH protocol. This functionality is a part of regional digital libraries platform created in Poland. The platform was required to reach one of main objectives of the Polish PIONIER Programme--to enrich the…

  11. Syndicating Rich Bibliographic Metadata Using MODS and RSS

    Science.gov (United States)

    Ashton, Andrew

    2008-01-01

    Many libraries use RSS to syndicate information about their collections to users. A survey of 65 academic libraries revealed their most common use for RSS is to disseminate information about library holdings, such as lists of new acquisitions. Even though typical RSS feeds are ill suited to the task of carrying rich bibliographic metadata, great…

  12. Automatic Extraction of Metadata from Scientific Publications for CRIS Systems

    Science.gov (United States)

    Kovacevic, Aleksandar; Ivanovic, Dragan; Milosavljevic, Branko; Konjovic, Zora; Surla, Dusan

    2011-01-01

    Purpose: The aim of this paper is to develop a system for automatic extraction of metadata from scientific papers in PDF format for the information system for monitoring the scientific research activity of the University of Novi Sad (CRIS UNS). Design/methodology/approach: The system is based on machine learning and performs automatic extraction…

  13. Genomic standards consortium workshop: metagenomics, metadata and metaanalysis (M3).

    Science.gov (United States)

    Sterk, Peter; Hirschman, Lynette; Field, Dawn; Wooley, John

    2010-01-01

    The M3 workshop has, as its primary focus, the rapidly growing area of metagenomics, including the metadata standards and the meta-analysis approaches needed to organize, process and interpret metagenomics data. The PSB Workshop builds on the first M3 meeting, a Special Interest Group (SIG) meeting at ISMB 2009, organized by the Genomics Standards Consortium.

  14. Discovering Physical Samples Through Identifiers, Metadata, and Brokering

    Science.gov (United States)

    Arctur, D. K.; Hills, D. J.; Jenkyns, R.

    2015-12-01

    Physical samples, particularly in the geosciences, are key to understanding the Earth system, its history, and its evolution. Our record of the Earth as captured by physical samples is difficult to explain and mine for understanding, due to incomplete, disconnected, and evolving metadata content. This is further complicated by differing ways of classifying, cataloguing, publishing, and searching the metadata, especially when specimens do not fit neatly into a single domain—for example, fossils cross disciplinary boundaries (mineral and biological). Sometimes even the fundamental classification systems evolve, such as the geological time scale, triggering daunting processes to update existing specimen databases. Increasingly, we need to consider ways of leveraging permanent, unique identifiers, as well as advancements in metadata publishing that link digital records with physical samples in a robust, adaptive way. An NSF EarthCube Research Coordination Network (RCN) called the Internet of Samples (iSamples) is now working to bridge the metadata schemas for biological and geological domains. We are leveraging the International Geo Sample Number (IGSN) that provides a versatile system of registering physical samples, and working to harmonize this with the DataCite schema for Digital Object Identifiers (DOI). A brokering approach for linking disparate catalogues and classification systems could help scale discovery and access to the many large collections now being managed (sometimes millions of specimens per collection). This presentation is about our community building efforts, research directions, and insights to date.

  15. Metadata Schema Used in OCLC Sampled Web Pages

    Directory of Open Access Journals (Sweden)

    Fei Yu

    2005-12-01

    Full Text Available The tremendous growth of Web resources has made information organization and retrieval more and more difficult. As one approach to this problem, metadata schemas have been developed to characterize Web resources. However, many questions have been raised about the use of metadata schemas such as which metadata schemas have been used on the Web? How did they describe Web accessible information? What is the distribution of these metadata schemas among Web pages? Do certain schemas dominate the others? To address these issues, this study analyzed 16,383 Web pages with meta tags extracted from 200,000 OCLC sampled Web pages in 2000. It found that only 8.19% Web pages used meta tags; description tags, keyword tags, and Dublin Core tags were the only three schemas used in the Web pages. This article revealed the use of meta tags in terms of their function distribution, syntax characteristics, granularity of the Web pages, and the length distribution and word number distribution of both description and keywords tags.

  16. Big Earth Data Initiative: Metadata Improvement: Case Studies

    Science.gov (United States)

    Kozimor, John; Habermann, Ted; Farley, John

    2016-01-01

    Big Earth Data Initiative (BEDI) The Big Earth Data Initiative (BEDI) invests in standardizing and optimizing the collection, management and delivery of U.S. Government's civil Earth observation data to improve discovery, access use, and understanding of Earth observations by the broader user community. Complete and consistent standard metadata helps address all three goals.

  17. Transforming and enhancing metadata for enduser discovery: a case study

    Directory of Open Access Journals (Sweden)

    Edward M. Corrado

    2014-05-01

    The Libraries’ workflow and portions of code will be shared; issues and challenges involved will be discussed. While this case study is specific to Binghamton University Libraries, examples of strategies used at other institutions will also be introduced. This paper should be useful to anyone interested in describing large quantities of photographs or other materials with preexisting embedded metadata.

  18. Training and Best Practice Guidelines: Implications for Metadata Creation

    Science.gov (United States)

    Chuttur, Mohammad Y.

    2012-01-01

    In response to the rapid development of digital libraries over the past decade, researchers have focused on the use of metadata as an effective means to support resource discovery within online repositories. With the increasing involvement of libraries in digitization projects and the growing number of institutional repositories, it is anticipated…

  19. A sulfated alpha-L-fucan from sea cucumber.

    Science.gov (United States)

    Ribeiro, A C; Vieira, R P; Mourão, P A; Mulloy, B

    1994-03-04

    A purified sulfated alpha-L-fucan from the sea cucumber body wall was studied, before and after almost complete desulfation, using methylation analysis and NMR spectroscopy. NMR analysis indicates that 2,4-di-O-sulfo-L-fucopyranose and unsubstituted fucopyranose are present in equal proportions, and that 2-O-sulfo-L-fucopyranose is present in twice that proportion. There is some NMR evidence that a regular repeating sequence of four residues comprises most or all of the polysaccharide chain.

  20. Study on the Resistance of Cucumber to Temperature Stresses

    Institute of Scientific and Technical Information of China (English)

    2000-01-01

    Four cucumber (Cucumis sativus L. ) inbred lines with different resistances to temperature stress were used in this experiment. The seedlings of line Q10 and Q21 that have high resistance to chilling stress also have high resistance to heat stress. The seedlings of line T94 and T55 that have lower resistance to chilling stress also have lower resistance to heat stress. It seems that the resistance of cucumber seedlings to different temperature stresses was similar. The influences of chilling and heat stress on the germination ability of cucumber seeds were different. Under the chilling stress, the germination percentage decreased less, and the germination velocity decreased more,so the germination index decreased significantly. Under the heat stress, the germination percentage and velocity of the seeds with high resistance decreased less and those of the seeds with lower resistance decreased more. The differences among the lines became more evident under the extreme heat condition. The content of chlorophyll decreased under the different temperature stresses, the content of chlorophyll a decreased more than that of chlorophyll b, so the value of chlorophyll a/b decreased.The temperature stress inhibited the photosynthesis of cucumber seedlings significantly. After chilling or heat treatment, the net photosynthetic rate (Pn) decreased remarkably. With the stomatal conductance (Gs) decreased, the stomatal limited value (Is) decreased, the intercellular CO2 concentration (Ci) increased, and both the apparent quantum efficiencies (AQE) and the carboxylation efficiencies (CE) decreased. Results showed that the non-stomatal factors were the main causes of Pn decrease, and the photosynthetic mechanism was destroyed remarkably.

  1. Fruit removal increases root-zone respiration in cucumber

    Science.gov (United States)

    Kläring, H.-P.; Hauschild, I.; Heißner, A.

    2014-01-01

    Background and Aims Many attempts have been made to avoid the commonly observed fluctuations in fruit initiation and fruit growth in crop plants, particularly in cucumber (Cucumis sativus). Weak sinks of the fruit have been assumed to result in low sink/source ratios for carbohydrates, which may inhibit photosynthesis. This study focuses on the effects of low sink–source ratios on photosynthesis and respiration, and in particular root-zone respiration. Methods Mature fruit-bearing cucumber plants were grown in an aerated nutrient solution. The root containers were designed as open chambers to allow measurement of CO2 gas exchange in the root zone. A similar arrangement in a gas-exchange cuvette enabled simultaneous measurements of CO2 exchange in the shoot and root zones. Key Results Reducing the sinks for carbohydrates by removing all fruit from the plants always resulted in a doubling of CO2 exchange in the root zone within a few hours. However, respiration of the shoot remained unaffected and photosynthesis was only marginally reduced, if at all. Conclusions The results suggest that the increased level of CO2 gas exchange in the root zone after removing the carbon sinks in the shoot is due primarily to the exudation of organic compounds by the roots and their decomposition by micro-organisms. This hypothesis must be tested in further experiments, but if proved correct it would make sense to include carbon leakage by root exudation in cucumber production models. In contrast, inhibition of photosynthesis was measurable only at zero fruit load, a situation that does not occur in cucumber production systems, and models that estimate production can therefore ignore (end-product) inhibition of photosynthesis. PMID:25301817

  2. Fine genetic mapping of Cp, a recessive gene for compact (dwarf) plant architecture in cucumber, cucumis sativus L

    Science.gov (United States)

    The compact or dwarf plant architecture is an important trait in cucumber breeding. Compact cucumber has the potential to be used in once-over mechanical harvest of pickling cucumber production. Compact growth habit is controlled by a simply inherited recessive gene. To facilitate markers assisted s...

  3. 40 CFR 174.516 - Coat protein of cucumber mosaic virus; exemption from the requirement of a tolerance.

    Science.gov (United States)

    2010-07-01

    ... 40 Protection of Environment 23 2010-07-01 2010-07-01 false Coat protein of cucumber mosaic virus...-INCORPORATED PROTECTANTS Tolerances and Tolerance Exemptions § 174.516 Coat protein of cucumber mosaic virus; exemption from the requirement of a tolerance. Residues of Coat Protein of Cucumber Mosaic Virus are...

  4. Metadata Standards in Theory and Practice: The Human in the Loop

    Science.gov (United States)

    Yarmey, L.; Starkweather, S.

    2013-12-01

    Metadata standards are meant to enable interoperability through common, well-defined structures and are a foundation for broader cyberinfrastructure efforts. Standards are central to emerging technologies such as metadata brokering tools supporting distributed data search. However, metadata standards in practice are often poor indicators of standardized, readily interoperable metadata. The International Arctic Systems for Observing the Atmosphere (IASOA) data portal provides discovery and access tools for aggregated datasets from ten long-term international Arctic atmospheric observing stations. The Advanced Cooperative Arctic Data and Information Service (ACADIS) Arctic Data Explorer brokers metadata to provide distributed data search across Arctic repositories. Both the IASOA data portal and the Arctic Data Explorer rely on metadata and metadata standards to support value-add services. Challenges have included: translating between different standards despite existing crosswalks, diverging implementation practices of the same standard across communities, changing metadata practices over time and associated backwards compatibility, reconciling metadata created by data providers with standards, lack of community-accepted definitions for key terms (e.g. ';project'), integrating controlled vocabularies, and others. Metadata record ';validity' or compliance with a standard has been insufficient for interoperability. To overcome these challenges, both projects committed significant work to integrate and offer services over already 'standards compliant' metadata. Both efforts have shown that the 'human-in-the-loop' is still required to fulfill the lofty theoretical promises of metadata standards. In this talk, we 1) summarize the real-world experiences of two data discovery portals working with metadata in standard form, and 2) offer lessons learned for others who work with and rely on metadata and metadata standards.

  5. Survey of fresh vegetables for nematodes, amoebae, and Salmonella.

    Science.gov (United States)

    Rude, R A; Jackson, G J; Bier, J W; Sawyer, T K; Risty, N G

    1984-01-01

    Contamination by nematodes, amoebae, and bacteria of the genus Salmonella was estimated in a 2-year survey of salad vegetables obtained from wholesale and retail sources. The vegetables examined were cucumbers, cabbage, lettuce, celery, carrots, radishes, tomatoes, mushrooms, cauliflower, and spinach. Nematode eggs and larvae were recovered by the Nacconol-ether centrifugation method. Some nematode eggs were identified as parasitic Ascaris sp.; the majority of larval nematodes were thought to be soil-dwelling species. Amoebae were recovered by rinsing the vegetables with distilled water, centrifuging the rinse water, and transferring the sediment to agar plates on which a bacterial lawn had previously been grown; trophozoites identified as the potentially pathogenic species--Acanthamoeba polyphaga, A. rhysodes, and A. castellanii--were the most common amoebae recovered on the plates. Salmonella spp. were grown from 4 of 50 samples.

  6. A Metadata Standard for Hydroinformatic Data Conforming to International Standards

    Science.gov (United States)

    Notay, Vikram; Carstens, Georg; Lehfeldt, Rainer

    2017-04-01

    The affordable availability of computing power and digital storage has been a boon for the scientific community. The hydroinformatics community has also benefitted from the so-called digital revolution, which has enabled the tackling of more and more complex physical phenomena using hydroinformatic models, instruments, sensors, etc. With models getting more and more complex, computational domains getting larger and the resolution of computational grids and measurement data getting finer, a large amount of data is generated and consumed in any hydroinformatics related project. The ubiquitous availability of internet also contributes to this phenomenon with data being collected through sensor networks connected to telecommunications networks and the internet long before the term Internet of Things existed. Although generally good, this exponential increase in the number of available datasets gives rise to the need to describe this data in a standardised way to not only be able to get a quick overview about the data but to also facilitate interoperability of data from different sources. The Federal Waterways Engineering and Research Institute (BAW) is a federal authority of the German Federal Ministry of Transport and Digital Infrastructure. BAW acts as a consultant for the safe and efficient operation of the German waterways. As part of its consultation role, BAW operates a number of physical and numerical models for sections of inland and marine waterways. In order to uniformly describe the data produced and consumed by these models throughout BAW and to ensure interoperability with other federal and state institutes on the one hand and with EU countries on the other, a metadata profile for hydroinformatic data has been developed at BAW. The metadata profile is composed in its entirety using the ISO 19115 international standard for metadata related to geographic information. Due to the widespread use of the ISO 19115 standard in the existing geodata infrastructure

  7. Subtropical Modern Greenhouse Cucumber Canopy Transpiration Under Summer Climate Condition

    Institute of Scientific and Technical Information of China (English)

    LUO Wei-hong; WANG Xiao-han; DING Wei-min; CHEN Yu-qing; DAI Jian-feng

    2002-01-01

    Greenhouse canopy transpiration not only has effects on greenhouse air temperature and humidity, but also is important for determining the set-point of fertigation. In this study, Penman-Monteith equation was used to calculate the greenhouse cucumber canopy transpiration under summer climate condition.The effects of greenhouse environmental factors on canopy transpiration were analyzed based on the measurements of greenhouse microclimate factors and canopy transpiration. The results showed that Penman-Monteith equation was reliable and robust in estimating greenhouse cucumber canopy transpiration under summer climate condition. Greenhouse cucumber canopy transpiration rate increased linearly with the increase of net radiation and water vapor pressure deficit (VPD) above the canopy. But the maximum value of the canopy transpiration rate occurred at the same time as that of VPD whereas about two hours later than that of net radiation. Based on the results, it was concluded that in addition to radiation, air humidity should also be considered when determine the set-point of fertigation.

  8. [Thermal dissipation pathway in cucumber seedling leaves under hypoxia stress].

    Science.gov (United States)

    Jia, Yong-xi; Sun, Jin; Wang, Li-ping; Shu, Sheng; Guo, Shi-rong

    2011-03-01

    A water culture experiment was conducted to study the relationship between photosynthetic thermal dissipation and xanthophyll cycle in cucumber seedling leaves under hypoxia stress (the dissolved oxygen concentration in nutrient solution was 0.9-1.1 mg x L(-1)). Under the hypoxia stress, there was a significant decrease in the quantum yield of PS II photochemistry rate (phi(PS II)), net photosynthetic rate (Pn) under saturation light intensity, quanta yield (AQY), and maximal photochemical efficiency (Fv/Fm), suggesting that the photoinhibition of the seedling leaves was induced. Meanwhile, the thermal dissipation (NPQ) and the allocation of dissipation energy (D) by antenna increased, but the photochemical quenching apparent (q(p)) decreased, suggesting the enhancement of thermal dissipation in cucumber leaves under hypoxia stress. A positive correlation was observed between NPQ and xanthophyll de-epoxidation state (DEPS), and both of them were promoted by ascorbic acid (AsA) and inhibited by 1,4-dithiothreitol (DTT), suggesting that xanthophyll cycle was the major pathway of photosynthetic thermal dissipation in cucumber seedling leaves under hypoxia stress.

  9. Transcriptome profile analysis of floral sex determination in cucumber.

    Science.gov (United States)

    Wu, Tao; Qin, Zhiwei; Zhou, Xiuyan; Feng, Zhuo; Du, Yalin

    2010-07-15

    Cucumber has been widely studied as a model for floral sex determination. In this investigation, we performed genome-wide transcriptional profiling of apical tissue of a gynoecious mutant (Csg-G) and the monoecious wild-type (Csg-M) of cucumber in an attempt to isolate genes involved in sex determination, using the Solexa technology. The profiling analysis revealed numerous changes in gene expression attributable to the mutation, which resulted in the down-regulation of 600 genes and the up-regulation of 143 genes. The Solexa data were confirmed by reverse transcription polymerase chain reaction (RT-PCR) and real-time quantitative RT-PCR (qRT-PCR). Gene ontology (GO) analysis revealed that the differentially expressed genes were mainly involved in biogenesis, transport and organization of cellular component, macromolecular and cellular biosynthesis, localization, establishment of localization, translation and other processes. Furthermore, the expression of some of these genes depended upon the tissue and the developmental stage of the flowers of gynoecious mutant. The results of this study suggest two important concepts, which govern sex determination in cucumber. First, the differential expression of genes involved in plant hormone signaling pathways, such as ACS, Asr1, CsIAA2, CS-AUX1 and TLP, indicate that phytohormones and their crosstalk might play a critical role in the sex determination. Second, the regulation of some transcription factors, including EREBP-9, may also be involved in this developmental process.

  10. A Solr Powered Architecture for Scientific Metadata Search Applications

    Science.gov (United States)

    Reed, S. A.; Billingsley, B. W.; Harper, D.; Kovarik, J.; Brandt, M.

    2014-12-01

    Discovering and obtaining resources for scientific research is increasingly difficult but Open Source tools have been implemented to provide inexpensive solutions for scientific metadata search applications. Common practices used in modern web applications can improve the quality of scientific data as well as increase availability to a wider audience while reducing costs of maintenance. Motivated to improve discovery and access of scientific metadata hosted at NSIDC and the need to aggregate many areas of arctic research, the National Snow and Ice Data Center (NSIDC) and Advanced Cooperative Arctic Data and Information Service (ACADIS) contributed to a shared codebase used by the NSIDC Search and Arctic Data Explorer (ADE) portals. We implemented the NSIDC Search and ADE to improve search and discovery of scientific metadata in many areas of cryospheric research. All parts of the applications are available free and open for reuse in other applications and portals. We have applied common techniques that are widely used by search applications around the web and with the goal of providing quick and easy access to scientific metadata. We adopted keyword search auto-suggest which provides a dynamic list of terms and phrases that closely match characters as the user types. Facet queries are another technique we have implemented to filter results based on aspects of the data like the instrument used or temporal duration of the data set. Service APIs provide a layer between the interface and the database and are shared between the NSIDC Search and ACADIS ADE interfaces. We also implemented a shared data store between both portals using Apache Solr (an Open Source search engine platform that stores and indexes XML documents) and leverage many powerful features including geospatial search and faceting. This presentation will discuss the application architecture as well as tools and techniques used to enhance search and discovery of scientific metadata.

  11. Serving Fisheries and Ocean Metadata to Communities Around the World

    Science.gov (United States)

    Meaux, Melanie F.

    2007-01-01

    NASA's Global Change Master Directory (GCMD) assists the oceanographic community in the discovery, access, and sharing of scientific data by serving on-line fisheries and ocean metadata to users around the globe. As of January 2006, the directory holds more than 16,300 Earth Science data descriptions and over 1,300 services descriptions. Of these, nearly 4,000 unique ocean-related metadata records are available to the public, with many having direct links to the data. In 2005, the GCMD averaged over 5 million hits a month, with nearly a half million unique hosts for the year. Through the GCMD portal (http://gcmd.nasa.gov/), users can search vast and growing quantities of data and services using controlled keywords, free-text searches, or a combination of both. Users may now refine a search based on topic, location, instrument, platform, project, data center, spatial and temporal coverage, and data resolution for selected datasets. The directory also offers data holders a means to advertise and search their data through customized portals, which are subset views of the directory. The discovery metadata standard used is the Directory Interchange Format (DIF), adopted in 1988. This format has evolved to accommodate other national and international standards such as FGDC and IS019115. Users can submit metadata through easy-to-use online and offline authoring tools. The directory, which also serves as the International Directory Network (IDN), has been providing its services and sharing its experience and knowledge of metadata at the international, national, regional, and local level for many years. Active partners include the Committee on Earth Observation Satellites (CEOS), federal agencies (such as NASA, NOAA, and USGS), international agencies (such as IOC/IODE, UN, and JAXA) and organizations (such as ESIP, IOOS/DMAC, GOSIC, GLOBEC, OBIS, and GoMODP).

  12. RESTful Access to NOAA's Space Weather Data and Metadata

    Science.gov (United States)

    Kihn, E. A.; Elespuru, P. R.; Zhizhin, M.

    2010-12-01

    The Space Physics Interactive Data Resource (SPIDR) (http://spidr.ngdc.noaa.gov) is a web based application for searching, accessing and interacting with NOAA’s space related data holdings. SPIDR serves as one of several interfaces to the National Geophysical Data Center's archived digital holdings. The SPIDR system while successful in delivering data and visualization to clients was also found to be limited in its ability to interact with other programs, its ability to integrate with alternate work-flows and its support for multiple user interfaces (UI). As such in 2006 the SPIDR development team implemented a SOAP based interface to SPIDR through which outside developers could make use of the resource. It was our finding however that despite our best efforts at documentation, the interface remained elusive to many users. That is to say a few strong programmers were able to format and use the XML messaging but in general it did not make the data more accessible. In response SPIDR has been extended to include a REST style web services API for all time series data. This provides direct, synchronous, simple programmatic access to over 200 individual parameters representing space weather data directly from the NGDC archive. In addition to the data service SPIDR has implemented a metadata service which allows users to get Federal Geographic Data Committee (FGDC )style metadata records describing all available data and stations. This metadata will migrate to the NASA Space Physics Archive Search and Extract ( SPASE) style in future versions in order to provide further detail. The combination of data, metadata and visualization tools available through SPIDR combine to make it a powerful virtual observatory (VO). When this is combined with a content rich metadata system we have experience vastly greater user response and usage This talk will present details of the development as well as lessons learned from 10 years of SPIDR development.

  13. METADATA DRIVEN EFFICIENT KEY GENERATION AND DISTRIBUTION IN CLOUD SECURITY

    Directory of Open Access Journals (Sweden)

    R. Anitha

    2014-01-01

    Full Text Available With rapid development of cloud computing to a greater extent IT industries outsource their sensitive data at cloud data storage location. To keep the stored data confidential against untrusted cloud service providers, a natural way is to store only encrypted data in the cloud severs and providing an efficient access control mechanism using a competent cipher key-Cmxn, which is becoming a promising cryptographic solution. In this proposed model the cipher key is generated based on attributes of metadata. The key problems of this approach includes, the generation of cipher key-Cmxn and establishing an access control mechanism for the encrypted data using cipher key, where keys cannot be revoked without the involvement of data owner and the Metadata Data Server (MDS, hence makes data owner feels comfortable about the data stored. From this study, we propose a novel Metadata driven efficient key generation and distribution policies for cloud data security system by exploiting the characteristic of the metadata stored. Our design enforces security by providing two novel features. 1. Generation of Cipher key-Cmxn using modified feistel network, which holds good for the avalanche effect as each round of the feistel function, depends on the previous round. 2. A novel key distribution policy is designed where the encryption and decryption keys cannot be compromised without the involvement of data owner and the Metadata Data Server (MDS, hence makes data owner comfortable about the data stored. We have implemented a security model that incorporates our ideas and evaluated the performance and scalability of the secured model.

  14. Serious Games for Health: The Potential of Metadata.

    Science.gov (United States)

    Göbel, Stefan; Maddison, Ralph

    2017-02-01

    Numerous serious games and health games exist, either as commercial products (typically with a focus on entertaining a broad user group) or smaller games and game prototypes, often resulting from research projects (typically tailored to a smaller user group with a specific health characteristic). A major drawback of existing health games is that they are not very well described and attributed with (machine-readable, quantitative, and qualitative) metadata such as the characterizing goal of the game, the target user group, or expected health effects well proven in scientific studies. This makes it difficult or even impossible for end users to find and select the most appropriate game for a specific situation (e.g., health needs). Therefore, the aim of this article was to motivate the need and potential/benefit of metadata for the description and retrieval of health games and to describe a descriptive model for the qualitative description of games for health. It was not the aim of the article to describe a stable, running system (portal) for health games. This will be addressed in future work. Building on previous work toward a metadata format for serious games, a descriptive model for the formal description of games for health is introduced. For the conceptualization of this model, classification schemata of different existing health game repositories are considered. The classification schema consists of three levels: a core set of mandatory descriptive fields relevant for all games for health application areas, a detailed level with more comprehensive, optional information about the games, and so-called extension as level three with specific descriptive elements relevant for dedicated health games application areas, for example, cardio training. A metadata format provides a technical framework to describe, find, and select appropriate health games matching the needs of the end user. Future steps to improve, apply, and promote the metadata format in the health games

  15. BrainBank Metadata Specification for the Human Brain Project and Neuroinformatics

    Directory of Open Access Journals (Sweden)

    Hu Lianglin

    2007-07-01

    Full Text Available Many databases and platforms for human brain data have been established in China over the years, and metadata plays an important role in understanding and using them. The BrainBank Metadata Specification for the Human Brain Project and Neuroinformatics provides a structure for describing the context and content information of BrainBank databases and services. It includes six parts: identification, method, data schema, distribution of the database, metadata extension, and metadata reference The application of the BrainBank Metadata Specification will promote conservation and management of BrainBank databases and platforms. it will also greatly facilitate the retrieval, evaluation, acquisition, and application of the data.

  16. Identification a coat protein region of cucumber mosaic virus (CMV) essential for long-distance movement in cucumber.

    Science.gov (United States)

    Salánki, Katalin; Kiss, László; Gellért, Akos; Balázs, Ervin

    2011-12-01

    To characterise the long-distance movement determinant of cucumoviral coat proteins (CPs), five mutants were engineered into the CMV CP bearing the corresponding tomato aspermy virus (TAV) loops exposed on the surface of the virion. Both viruses can move long-distance in Nicotiana clevelandii, but only CMV can move long-distance in cucumber. Investigation of the CMV chimeras identified three amino acids of the βB-βC loop that were essential for the CMV long-distance movement in cucumber. Introducing these mutations into the TAV CP was not sufficient for long-distance movement, indicating that this is not the sole region causing long-distance movement deficiency.

  17. The National Digital Information Infrastructure Preservation Program; Metadata Principles and Practicalities; Challenges for Service Providers when Importing Metadata in Digital Libraries; Integrated and Aggregated Reference Services.

    Science.gov (United States)

    Friedlander, Amy; Duval, Erik; Hodgins, Wayne; Sutton, Stuart; Weibel, Stuart L.; McClelland, Marilyn; McArthur, David; Giersch, Sarah; Geisler, Gary; Hodgkin, Adam

    2002-01-01

    Includes 6 articles that discuss the National Digital Information Infrastructure Preservation Program at the Library of Congress; metadata in digital libraries; integrated reference services on the Web. (LRW)

  18. The National Digital Information Infrastructure Preservation Program; Metadata Principles and Practicalities; Challenges for Service Providers when Importing Metadata in Digital Libraries; Integrated and Aggregated Reference Services.

    Science.gov (United States)

    Friedlander, Amy; Duval, Erik; Hodgins, Wayne; Sutton, Stuart; Weibel, Stuart L.; McClelland, Marilyn; McArthur, David; Giersch, Sarah; Geisler, Gary; Hodgkin, Adam

    2002-01-01

    Includes 6 articles that discuss the National Digital Information Infrastructure Preservation Program at the Library of Congress; metadata in digital libraries; integrated reference services on the Web. (LRW)

  19. The Ontological Perspectives of the Semantic Web and the Metadata Harvesting Protocol: Applications of Metadata for Improving Web Search.

    Science.gov (United States)

    Fast, Karl V.; Campbell, D. Grant

    2001-01-01

    Compares the implied ontological frameworks of the Open Archives Initiative Protocol for Metadata Harvesting and the World Wide Web Consortium's Semantic Web. Discusses current search engine technology, semantic markup, indexing principles of special libraries and online databases, and componentization and the distinction between data and…

  20. Effect of pesticide mixture on value of fresh, fermented and pickles cucumbers

    Directory of Open Access Journals (Sweden)

    Krystyna WElkner

    2013-12-01

    Full Text Available In years 1998-1999 effects of fungicides (azoxystrobin and copper hydroxide, insecticides (etafenproks and pirimicarb and their mixtures on chemical composition and organoleptic quality of fresh, fermented and pickled cucumbers were studied_ To analyses fruits were taken after 7 and 12 days from treatment. Fresh cucumber fruits after 7 days from treatment with investigated pesticides contained less carbohydrates and ascorbic acids and higher level of nitrates in compare to untreated fruits (control. After 12 days from treatment the differences between treated and untreated fruits dissapeared. Cucumber fruits harvested 7 and 12 days after treatment were processed separately. Quality evaluation of fermented and pickled cucumbers was carried out 4 months after processing. In most of cucumber fruits (7 days after treatment with pesticides treated with pesticides empty cavities were found, and not in control (untreated. Number of cavities was highest in fresh and pickled cucumbers treated with mixture of fungicide and insecticide. In case of fermented cucumbers highest number of empty cavities occurred in fruits treated with fungicide azoxystrobin. Cucumber fruits taken to fermentation process 7 days after day of treatment had darker green colour, lowered haIdness, and larger empty cavities than untreated fruits. In fruits harvested 12 days after pesticides application such differencess were not observed.

  1. Inheritance of Beta-Carotene-Associated Flesh Color in Cucumber (Cucumis Sativus L.) Fruit

    Science.gov (United States)

    The nutritional value of cucumber (Cucumis sativus L.) can be improved by the introgression of ß-carotene (i.e., provitamin A and/or orange flesh) genes from “Xishuangbanna gourd” (XIS; Cucumis sativus var. xishuangbannanesis Qi et Yuan) into U.S. pickling cucumber. However, the genetics of ß-carote...

  2. On-Line Hyperspectral Transmittance Imaging for Internal Defect Detection of Pickling Cucumbers

    Science.gov (United States)

    Hyperspectral imaging technique under transmittance mode was investigated for detection of internal defect in pickling cucumbers such as carpel suture separation or hollow cucumbers caused by mechanical stress. A prototype of on-line hyperspectral transmittance imaging system was developed for real...

  3. Engineering Research on Quality Detection of Pickling Cucumbers: 2009 Progress Report

    Science.gov (United States)

    This report briefly summarizes the three studies performed in 2009 on cucumber defect detection. Hyperspectral imaging transmittance mode has demonstrated great potential for online sorting and grading of cucumbers and pickles. However, the technique is still limited by its speed in acquiring and pr...

  4. QTL mapping of powdery mildew resistance in WI 2757 cucumber (Cucumis sativus L)

    Science.gov (United States)

    Powdery mildew is a serious fungal disease of cucumber and other cucurbot crops in the US and many other parts of the world. Resistant cultivars have been deployed in production for a long time, but the genetic mechanisms of powdery mildew resistance in cucumber are not well understood. In a three-y...

  5. Reduction of Salmonella populations on cucumber fruit by application of lytic bacteriophages

    Science.gov (United States)

    Background: Foodborne illness outbreaks of Salmonella enterica associated with consumption of cucumbers (Cucumis sativus) in the U.S. in 2014 and 2015 sickened over 1000 people and caused 5 deaths. Whole and fresh-cut cucumbers are susceptible to Salmonella contamination during growing and harvestin...

  6. Determination of germination quality of cucumber (Cucumis sativus) seed by LED-induced hyperspectral reflectance imaging

    Science.gov (United States)

    Purpose: We developed a viability evaluation method for cucumber (Cucumis sativus) seed using hyperspectral reflectance imaging. Methods: Reflectance spectra of cucumber seeds in the 400 to 1000 nm range were collected from hyperspectral reflectance images obtained using blue, green, and red LED ill...

  7. Transcriptomic and QTL analysis suggest candidate fruit shape factors in cucumber (Cucumis sativus)

    Science.gov (United States)

    Fruit size and shape are important determinants of market class and value in cucumber; however, underlying mechanisms regulating size and shape have not been identified. To gain insight into possible factors regulating cucumber fruit growth, we used a combined QTL and transcriptome approach to exami...

  8. Pentatricopeptide repeat 336 as the candidate gene for paternal sorting of mitochondria (Psm) in cucumber

    Science.gov (United States)

    Cucumber (Cucumis sativus L.) is a useful plant to study organellar-nuclear interactions because its three genomes show differential transmission: bi-parental nuclear, maternal chloroplast and paternal mitochondrial (mt). The mt DNA of cucumber is relatively large due in part to accumulation of rep...

  9. Comparative mapping of ZYMV resistances in cucumber (Cucumis sativus L.) and melon (Cucumis melo L.).

    Science.gov (United States)

    Park, Y; Katzir, N; Brotman, Y; King, J; Bertrand, F; Havey, M

    2004-08-01

    Zucchini yellow mosaic virus (ZYMV) routinely causes significant losses in cucumber ( Cucumis sativus L.) and melon ( Cucumis melo L.). ZYMV resistances from the cucumber population 'TMG1' and the melon plant introduction (PI) 414723 show different modes of inheritance and their genetic relationships are unknown. We used molecular markers tightly linked to ZYMV resistances from cucumber and melon for comparative mapping. A 5-kb genomic region (YCZ-5) cosegregating with the zym locus of cucumber was cloned and sequenced to reveal single nucleotide polymorphisms and indels distinguishing alleles from ZYMV-resistant (TMG1) and susceptible (Straight 8) cucumbers. A low-copy region of the YCZ-5 clone was hybridized to bacterial artificial chromosome (BAC) clones of melon and a 180-kb contig assembled. One end of this melon contig was mapped in cucumber and cosegregated with ZYMV resistance, demonstrating that physically linked regions in melon show genetic linkage in cucumber. However the YCZ-5 region segregated independently of ZYMV resistance loci in two melon families. These results establish that these sources of ZYMV resistances from cucumber TMG1 and melon PI414723 are likely non-syntenic.

  10. Thick root of cucumber: other susceptible plants and the effect of pH

    NARCIS (Netherlands)

    Gaag, van der D.J.; Paternotte, P.; Hamelink, R.

    2002-01-01

    Thick root is a relatively new disorder of cucumber grown in artificial substrates. Plants of cucumber, tomato, sweet pepper, lupin, anthurium, Cucurbita ficifolia, C. maxima and two lines from crosses between C. maxima and C. moschata were grown in thick root disease (TRD)-infested nutrient solutio

  11. Identification of five sea cucumber species through PCR-RFLP analysis

    Science.gov (United States)

    Lv, Yingchun; Zheng, Rong; Zuo, Tao; Wang, Yuming; Li, Zhaojie; Xue, Yong; Xue, Changhu; Tang, Qingjuan

    2014-10-01

    Sea cucumbers are traditional marine food and Chinese medicine in Asia. The rapid expansion of sea cucumber market has resulted in various problems, such as commercial fraud and mislabeling. Conventionally, sea cucumber species could be distinguished by their morphological and anatomical characteristics; however, their identification becomes difficult when they are processed. The aim of this study was to develop a new convenient method of identifying and distinguishing sea cucumber species. Polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) analysis of mitochondrial cytochrome oxidase I gene ( COI) was used to identifing five sea cucumber species ( Apostichopus japonicus, Cucumaria frondosa, Thelenota ananas, Parastichopus californicus and Actinopyga lecanora). A 692 bp fragment of COI was searched for BamHI, KpnI, PstI, XbaI and Eco31I restriction sites with DNAMAN 6.0, which were then used to PCR-RFLP analysis. These five sea cucumber species can be discriminated from mixed sea cucumbers. The developed PCR-RFLP assay will facilitate the identification of sea cucumbers, making their source tracing and quality controlling feasible.

  12. Multispectral fluorescence imaging technique for discrimination of cucumber (Cucumis Sativus) seed viability

    Science.gov (United States)

    In this study, we developed a nondestructive method for discriminating viable cucumber (Cucumis sativus) seeds based on hyperspectral fluorescence imaging. The fluorescence spectra of cucumber seeds in the 420–700 nm range were extracted from hyperspectral fluorescence images obtained using 365 nm u...

  13. A truncated F-box protein confers the dwarfism in cucumber

    Science.gov (United States)

    Dwarfism is an important plant architecture trait for cucumber breeding. In the present study, we identified a dwarf mutant 406M in cucumber which showed a shorter internode length as compared with its wild type. In a BC1F2 population from the cross of 406M with its wild type parental line 406, the ...

  14. First complete genome sequence of an emerging cucumber green mottle mosaic virus isolate in North America

    Science.gov (United States)

    The complete genome sequence (6,423 nt) of an emerging Cucumber green mottle mosaic virus (CGMMV) isolate on cucumber in North America was determined through deep sequencing of sRNA and rapid amplification of cDNA ends. It shares 99% nucleotide sequence identity to the Asian genotype, but only 90% t...

  15. Metabolic footprinting of Lactobacillus buchneri strain LA1147 during anaerobic spoilage of fermented cucumbers

    Science.gov (United States)

    Lactobacillus buchneri has recently been associated with anaerobic spoilage of fermented cucumbers due to its ability to metabolize lactic acid into acetic acid and 1,2-propanediol. However, we have limited knowledge of other chemical components in fermented cucumber that may be related to spoilage ...

  16. Fine genetic mapping of target leaf spot resistance gene cca-3 in cucumber, Cucumis sativus L

    Science.gov (United States)

    The target leaf spot (TLS) is a very important fungal disease in cucumber. In this study, we conducted fine genetic mapping of a recessively inherited resistance gene, cca-2 against TLS with 1,083 F2 plants derived from the resistant cucumber inbred line D31 and the susceptible line D5. Initial mapp...

  17. [Effects of wheat root exudates on cucumber growth and soil fungal community structure].

    Science.gov (United States)

    Wu, Feng-Zhi; Li, Min; Cao, Peng; Ma, Ya-Fei; Wang, Li-Li

    2014-10-01

    With wheat as the donor plant and cucumber as the receptor plant, this study investigated the effects of root exudates from wheat cultivars with different allelopathic potentials (positive or negative) and companion cropping with wheat on soil fungal community structure by PCR-DGGE method and cucumber growth. Results showed that the wheat root exudates with positive allelopathic potential increased height and stem diameter of cucumber seedlings significantly, compared to the control seedlings (W) after 6 days and 12 days treatment, respectively. Also, wheat root exudates with both positive and negative allelopathic potential increased the seedling height of cucumber significantly after 18 days treatment. The wheat root exudates with different allelopathic potentials decreased the band number, Shannon and evenness indices of soil fungal community significantly in cucumber seedling rhizosphere, and those in the soil with the control seedlings (W) were also significantly higher than that in the control soil without seedlings (Wn) after 6 days treatment. The band number, Shannon and evenness indices in all the treatments were significantly higher than those in the control soil without seedlings (Wn) after 18 days treatment. Companion cropping with negative allelopathic potential wheat decreased the Shannon and evenness indices of soil fungi community significantly in the cucumber seedling rhizosphere, suggesting the wheat root exudates and companion cropping with wheat changed soil fungal community structure in the cucumber seedling rhizosphere. The results of DGGE map and the principal component analysis showed that companion cropping with wheat cultivars with different allelopathic potentials changed soil fungal community structure in cucumber seedling rhizosphere.

  18. Preparation of a Lactobacillus plantarum starter culture for cucumber fermentations that can meet kosher guidelines

    Science.gov (United States)

    A method is described for growth of a Lactobacillus plantarum starter culture in jars of commercially available pasteurized fresh-pack kosher dill cucumbers so that jars can be used to inoculate commercial scale cucumber fermentation tanks. A procedure is also described to transfer lactic acid bacte...

  19. Metadata Creation Practices in Digital Repositories and Collections: Schemata, Selection Criteria, and Interoperability

    Directory of Open Access Journals (Sweden)

    Jung-ran Park

    2010-09-01

    Full Text Available This study explores the current state of metadata-creation practices across digital repositories and collections by using data collected from a nationwide survey of mostly cataloging and metadata professionals. Results show that MARC, AACR2, and LCSH are the most widely used metadata schema, content standard, and subjectcontrolled vocabulary, respectively. Dublin Core (DC is the second most widely used metadata schema, followed by EAD, MODS, VRA, and TEI. Qualified DC’s wider use vis-à-vis Unqualified DC (40.6 percent versus 25.4 percent is noteworthy. The leading criteria in selecting metadata and controlled-vocabulary schemata are collection-specific considerations, such as the types of resources, nature of the collection, and needs of primary users and communities. Existing technological infrastructure and staff expertise also are significant factors contributing to the current use of metadata schemata and controlled vocabularies for subject access across distributed digital repositories and collections. Metadata interoperability remains a major challenge. There is a lack of exposure of locally created metadata and metadata guidelines beyond the local environments. Homegrown locally added metadata elements may also hinder metadata interoperability across digital repositories and collections when there is a lack of sharable mechanisms for locally defined extensions and variants.

  20. Occurrence of patulin in fruit and vegetables.

    Science.gov (United States)

    Frank, H K

    1977-01-01

    In different varieties of apples and pears suffering from brown rot, patulin was found in about 50 p. 100 of samples investigated (about 120). Patulin levels as high as 1 g/kg rotten material were found 2-3 days after the fruit was removed from the cold store where it had been stored for 5 months. A significant diffusion into the healthy plant tissue was not observed in apples, but in peaches, tomatoes and pears. Vegetable products with natural patulin content: apples, pears, peaches, apricots, bananas, pine apples, grapes. After inoculation with Penicillium expansum, P. urticae or Byssochlamys nivea, patulin was also found in greengages, strawberries, honeydew melons, red and green paprika, tomatoes, cucumbers and carrots. The artificial infection failed in celeriac, kohlrabi, cauliflower, red cabbage, radish, horseradish, onions, squash (zuccini), potatoes and egg plants. The author further investigated the patulin synthesis as a function of the temperature as well as its oxygen requirement in various mold species and strains.

  1. Treating metadata as annotations: separating the content markup from the content

    Directory of Open Access Journals (Sweden)

    Fredrik Paulsson

    2007-11-01

    Full Text Available The use of digital learning resources creates an increasing need for semantic metadata, describing the whole resource, as well as parts of resources. Traditionally, schemas such as Text Encoding Initiative (TEI have been used to add semantic markup for parts of resources. This is not sufficient for use in a ”metadata ecology”, where metadata is distributed, coherent to different Application Profiles, and added by different actors. A new methodology, where metadata is “pointed in” as annotations, using XPointers, and RDF is proposed. A suggestion for how such infrastructure can be implemented, using existing open standards for metadata, and for the web is presented. We argue that such methodology and infrastructure is necessary to realize the decentralized metadata infrastructure needed for a “metadata ecology".

  2. Extending attributes page: a scheme for enhancing the reliability of storage system metadata*

    Institute of Scientific and Technical Information of China (English)

    Juan WANG; Dan FENG; Fang WANG; Cheng-tao LU

    2009-01-01

    In an object-based storage system, a novel scheme named EAP (extending attributes page) is presented to enhance the metadata reliability of the system by adding the user object file information attributes page for each user object and storing the file-related attributes of each user object in object-based storage devices. The EAP scheme requires no additional hardware equipments compared to a general method which uses backup metadata servers to improve the metadata reliability. Leveraging a Markov chain, this paper compares the metadata reliability of the system using the EAP scheme with that using only metadata servers to offer the file metadata service. Our results demonstrate that the EAP scheme can dramatically enhance the reliability of storage system metadata.

  3. Inferring Metadata for a Semantic Web Peer-to-Peer Environment

    Directory of Open Access Journals (Sweden)

    Mark Painter

    2004-04-01

    Full Text Available Learning Objects Metadata (LOM aims at describing educational resources in order to allow better reusability and retrieval. In this article we show how additional inference rules allows us to derive additional metadata from existing ones. Additionally, using these rules as integrity constraints helps us to define the constraints on LOM elements, thus taking an important step toward a complete axiomatization of LOM metadata (with the goal of transforming the LOM definitions from a simple syntactical description into a complete ontology. We will use RDF metadata descriptions and Prolog as an inference language. We show how these rules can be applied for the extensions of course metadata using an existing test bed with several courses. Based on the Edutella peer-to-peer architecture we can easily make RDF metadata accessible to a whole community using Edutella peers that manage RDF metadata. By processing inference rules we can achieve better search results.

  4. VEGETATION MAPPING IN WETLANDS

    Directory of Open Access Journals (Sweden)

    F. PEDROTTI

    2004-01-01

    Full Text Available The current work examines the main aspects of wetland vegetation mapping, which can be summarized as analysis of the ecological-vegetational (ecotone gradients; vegetation complexes; relationships between vegetation distribution and geomorphology; vegetation of the hydrographic basin lo which the wetland in question belongs; vegetation monitoring with help of four vegetation maps: phytosociological map of the real and potential vegetation, map of vegetation dynamical tendencies, map of vegetation series.

  5. Vegetable Grafting: The Implications of a Growing Agronomic Imperative for Vegetable Fruit Quality and Nutritive Value

    Directory of Open Access Journals (Sweden)

    Marios C. Kyriacou

    2017-05-01

    Full Text Available Grafting has become an imperative for intensive vegetable production since chlorofluorocarbon-based soil fumigants were banned from use on grounds of environmental protection. Compelled by this development, research into rootstock–scion interaction has broadened the potential applications of grafting in the vegetable industry beyond aspects of soil phytopathology. Grafting has been increasingly tapped for cultivation under adverse environs posing abiotic and biotic stresses to vegetable crops, thus enabling expansion of commercial production onto otherwise under-exploited land. Vigorous rootstocks have been employed not only in the open field but also under protected cultivation where increase in productivity improves distribution of infrastructural and energy costs. Applications of grafting have expanded mainly in two families: the Cucurbitaceae and the Solanaceae, both of which comprise major vegetable crops. As the main drives behind the expansion of vegetable grafting have been the resistance to soilborne pathogens, tolerance to abiotic stresses and increase in yields, rootstock selection and breeding have accordingly conformed to the prevailing demand for improving productivity, arguably at the expense of fruit quality. It is, however, compelling to assess the qualitative implications of this growing agronomic practice for human nutrition. Problems of impaired vegetable fruit quality have not infrequently been associated with the practice of grafting. Accordingly, the aim of the current review is to reassess how the practice of grafting and the prevalence of particular types of commercial rootstocks influence vegetable fruit quality and, partly, storability. Physical, sensorial and bioactive aspects of quality are examined with respect to grafting for watermelon, melon, cucumber, tomato, eggplant, and pepper. The physiological mechanisms at play which mediate rootstock effects on scion performance are discussed in interpreting the

  6. Expression patterns of genes encoding plasma membrane aquaporins during fruit development in cucumber (Cucumis sativus L.).

    Science.gov (United States)

    Shi, Jin; Wang, Jinfang; Li, Ren; Li, Dianbo; Xu, Fengfeng; Sun, Qianqian; Zhao, Bin; Mao, Ai-Jun; Guo, Yang-Dong

    2015-11-01

    Aquaporins are membrane channels precisely regulating water movement through cell membranes in most living organisms. Despite the advances in the physiology of fruit development, their participation during fruit development in cucumber still barely understood. In this paper, the expressions of 12 genes encoding plasma membrane intrinsic proteins (PIPs) were analyzed during cucumber fruit development in our work. Based on the homology search with known PIPs from rice, Arabidopsis and strawberry, 12 cucumber PIP genes subfamily members were identified. Cellular localization assays indicated that CsPIPs were localized in the plasma membrane. The qRT-PCR analysis of CsPIPs showed that 12 CsPIPs were differentially expressed during fruit development. These results suggest that 12 genes encoding plasma membrane intrinsic proteins (CsPIPs) play very important roles in cucumber life cycle and the data generated will be helpful in understanding their precise roles during fruit development in cucumber.

  7. Induction and mechanism of cucumber resistance to anthracnose induced by Pieris rapae extract

    Institute of Scientific and Technical Information of China (English)

    2008-01-01

    Pieris rapae extract was sprayed on the surface of cucumber leaf to determine the induction of resistance to anthracnose.The enzyme activities of peroxidase (POD) and polyphenoloxidase (PPO) were detected on cucumber leaves after P.rapae extract induction and pathogen challenge.The results showed that the disease index of cucumber anthracnose was significantly decreased after the cucumber was induced with the P.rapae extract at a concentration of 5.0 mg·mL-1.The POD and PPO activities in foliar-applied P.rapae extract without pathogen inoculation (PETO) or with pathogen inoculation (PETI) were relatively higher than those with no-P.rapae extract treatment and without pathogen inoculation (CONO) or with pathogen inoculation (CONI),respectively.The results suggested that the increased levels of POD and PPO activities in PETO and PETI play an important role in the induction of resistance to cucumber anthracnose.

  8. Economics of Peppers and Salad Cucumbers Production on an Open Land and in a Protected Space

    Directory of Open Access Journals (Sweden)

    Silvio Pozderec

    2014-02-01

    Full Text Available The research is based on the economic analysis of growing peppers (Capsicum annum L. and salad cucumbers (Cucumis sativus L. in an open land and in a protected space. For this purpose the simulation models were developed for the growing of the peppers and salad cucumbers that were based on the technological-economic input data for two growing systems, in the open and in the protected space. The results of the economic analysis show that the growing of peppers and salad cucumbers in the protected space is more profi table than growing them in the open land. The growing of salad cucumbers in the protected space has proven to be more reasonable than growing peppers, as the coefficient of economics (Ce of growing salad cucumbers reached the value Ce = 1.4, while the value in growing peppers was Ce = 1.1. This was also confirmed with two scenarios that were analysed using the sensitivity analysis.

  9. Economics of Peppers and Salad Cucumbers Production on an Open Land and in a Protected Space

    Directory of Open Access Journals (Sweden)

    Silvio Pozderec

    2010-09-01

    Full Text Available The research is based on the economic analysis of growing peppers (Capsicum annum L. and salad cucumbers (Cucumis sativus L. in an open land and in a protected space. For this purpose the simulation models were developed for the growing of the peppers and salad cucumbers that were based on the technological-economic input data for two growing systems, in the open and in the protected space. The results of the economic analysis show that the growing of peppers and salad cucumbers in the protected space is more profi table than growing them in the open land. The growing of salad cucumbers in the protected space has proven to be more reasonable than growing peppers, as the coefficient of economics (Ce of growing salad cucumbers reached the value Ce = 1.4, while the value in growing peppers was Ce = 1.1. This was also confirmed with two scenarios that were analysed using the sensitivity analysis.

  10. Lactobacilli and tartrazine as causative agents of red-color spoilage in cucumber pickle products.

    Science.gov (United States)

    Pérez-Díaz, I M; Kelling, R E; Hale, S; Breidt, F; McFeeters, R F

    2007-09-01

    The cucumber pickling industry has sporadically experienced spoilage outbreaks in pickled cucumber products characterized by development of red color on the surface of the fruits. Lactobacillus casei and Lactobacillus paracasei were isolated from 2 outbreaks of this spoilage that occurred about 15 y apart during the last 3 decades. Both organisms were shown to produce this spoilage when inoculated into pickled cucumbers while concomitantly degrading the azo dye tartrazine (FD&C yellow nr 5). This food dye is used as a yellow coloring in the brine cover solutions of commercial pickled cucumber products. The red color does not occur in the absence of tartrazine, nor when turmeric is used as a yellow coloring in the pickles. Addition of sodium benzoate to the brine cover solutions of a pickled cucumber product, more specifically hamburger dill pickles, prevented growth of these lactic acid bacteria and the development of the red spoilage.

  11. Comparative demography of Liriomyza sativae Blanchard (Diptera: Agromyzidae) on cucumber at seven constant temperatures

    Institute of Scientific and Technical Information of China (English)

    MOSTAFA HAGHANI; YAGHOUB FATHIPOUR; ALI ASGHAR TALEBI; VALIOLLAH BANIAMERI

    2006-01-01

    Reproduction and population parameters of vegetable leafminer,Liriomyza sativae Blanchard were measured on cucumber (Cucumis sativus L.) at seven constant temperatures (10,15,20,25,30,35 and 40℃). No eggs were found at 10℃ and flies died after exposure to 40℃. The significantly highest intrinsic rate of natural increase (rm),net reproductive rate (R0) and finite rate of increase (λ) of L. Sativae were obtained at 25℃ as 0.196,52.452,and 1.216,respectively. The above-mentioned parameters decreased at 15℃ and 35℃ and this reduction at 35℃ was strong. Doubling time (DT) varied significantly with temperature. The shortest doubling time was obtained at 25℃. Mean generation time (T)decreased significantly with increasing temperature between 15℃ and 35℃. Percentage of immature ages in the stable age distribution was more than 95% at all temperatures. Female longevity was greater than male at all temperatures. Liriomyza sativae lived for a long time at 15℃,whereas at 35℃ had lower survival rates. The effect of temperature on reproduction,especially the intrinsic rate of increase of L. Sativae would be useful for predicting its longterm population fluctuation over several generations.

  12. Effect of diurnal temperature alternations on plant growth and mineral composition in cucumber, melon and watermelon.

    Science.gov (United States)

    Inthichack, Phommy; Nishimura, Yasuyo; Fukumoto, Yasufumi

    2014-08-01

    This study investigated plant growth and mineral composition in three cucurbit crops of cucumber, melon and watermelon grown under four constant day and night temperatures (DIF) of 25/15, 22.5/17.5, 17.5/22.5 and 15/25 degrees C. As expected, the growth and development of the three cucurbits were strongly temperature dependent. Plant height and relative chlorophyll content of the three crops decreased linearly along with decreases in day temperature. Leaf and stem dry weight decreased significantly under negative DIFs and the lowest value was in DIF plot 15/25 degrees C. However, the negative DIF of 15/25 degrees C resulted in increased content of all mineral nutrients (N, P, K, Ca, Mg, Mn and Cu) in both the leaf and stem of the three cucurbit crops. The data suggest that a negative DIF as low as 15/25 degrees C may be beneficial to greenhouse-grown cucurbit crop producers, by controlling vegetative growth that facilitates crop management, with no negative effect on or enhancement of the uptake rates of mineral nutrients which are required to determine yield and fruit quality at the production stage. Effective utilization of diurnal temperature alternations is one strategy that can be used to reduce energy consumption in greenhouses.

  13. Detection of mechanical injury on pickling cucumbers using near-infrared hyperspectral imaging

    Science.gov (United States)

    Ariana, D.; Lu, R.; Guyer, D.

    2005-11-01

    Automated detection of defects on freshly harvested pickling cucumbers will help the pickle industry provide higher quality pickle products and reduce potential economic losses. Research was conducted on using a hyperspectral imaging system for detecting defects on pickling cucumbers caused by mechanical stress. A near-infrared hyperspectral imaging system was used to capture both spatial and spectral information from cucumbers in the spectral region of 900 - 1700 nm. The system consisted of an imaging spectrograph attached to an InGaAs camera with line-light fiber bundles as an illumination source. Cucumber samples were subjected to two forms of mechanical loading, dropping and rolling, to simulate stress caused by mechanical harvesting. Hyperspectral images were acquired from the cucumbers over time periods of 0, 1, 2, 3, and 6 days after mechanical stress. Hyperspectral image processing methods, including principal component analysis and wavelength selection, were developed to separate normal and mechanically injured cucumbers. Results showed that reflectance from normal or non-bruised cucumbers was consistently higher than that from bruised cucumbers. The spectral region between 950 and 1350 nm was found to be most effective for bruise detection. The hyperspectral imaging system detected all mechanically injured cucumbers immediately after they were bruised. The overall detection accuracy was 97% within two hours of bruising and it was lower as time progressed. Lower detection accuracies for the prolonged times after bruising were attributed to the self- healing of the bruised tissue after mechanical injury. This research demonstrated that hyperspectral imaging is useful for detecting mechanical injury on pickling cucumbers.

  14. Coordinate Reference System Metadata in Interdisciplinary Environmental Modeling

    Science.gov (United States)

    Blodgett, D. L.; Arctur, D. K.; Hnilo, J.; Danko, D. M.; Rutledge, G. K.

    2011-12-01

    For global climate modeling based on a unit sphere, the positional accuracy of transformations between "real earth" coordinates and the spherical earth coordinates is practically irrelevant due to the coarse grid and precision of global models. Consequently, many climate models are driven by data using real-earth coordinates without transforming them to the shape of the model grid. Additionally, metadata to describe the earth shape and its relationship to latitude longitude demarcations, or datum, used for model output is often left unspecified or ambiguous. Studies of weather and climate effects on coastal zones, water resources, agriculture, biodiversity, and other critical domains typically require positional accuracy on the order of several meters or less. This precision requires that a precise datum be used and accounted for in metadata. While it may be understood that climate model results using spherical earth coordinates could not possibly approach this level of accuracy, precise coordinate reference system metadata is nevertheless required by users and applications integrating climate and geographic information. For this reason, data publishers should provide guidance regarding the appropriate datum to assume for their data. Without some guidance, analysts must make assumptions they are uncomfortable or unwilling to make and may spend inordinate amounts of time researching the correct assumption to make. A consequence of the (practically justified for global climate modeling) disregard for datums is that datums are also neglected when publishing regional or local scale climate and weather data where datum information may be important. For example, observed data, like precipitation and temperature measurements, used in downscaling climate model results are georeferenced precisely. If coordinate reference system metadata are disregarded in cases like this, systematic biases in geolocation can result. Additionally, if no datum transformation was applied to

  15. General Vegetation

    Data.gov (United States)

    Earth Data Analysis Center, University of New Mexico — This file contains vector digital data for vegetation groupings in New Mexico at a 1:1,000,000 scale. The source software was ARC/INFO 5.0.1 and the conversion...

  16. Microbial Quality, Safety, and Pathogen Detection by Using Quantitative PCR of Raw Salad Vegetables Sold in Dhanbad City, India.

    Science.gov (United States)

    Mritunjay, Sujeet K; Kumar, Vipin

    2017-01-01

    Consumption of ready-to-eat fresh vegetables has increased worldwide, with a consequent increase in outbreaks caused by foodborne pathogens. In the Indian subcontinent, raw fresh vegetables are usually consumed without washing or other decontamination procedures, thereby leading to new food safety threats. In this study, the microbiological quality and pathogenic profile of raw salad vegetables was evaluated through standard protocols. In total, 480 samples (60 each of eight different salad vegetables) of cucumber, tomato, carrot, coriander, cabbage, beetroot, radish, and spinach were collected from different locations in Dhanbad, a city famous for its coal fields and often called the "Coal Capital of India." The samples were analyzed for total plate count, total coliforms, Escherichia coli , E. coli O157:H7, Listeria monocytogenes , and Salmonella spp. Incidences of pathogens were detected through quantitative PCR subsequent to isolation. Results showed that 46.7% (for total plate counts) and 30% (for total coliforms) of samples were unacceptable for consumption per the Food Safety and Standards Authority of India. Pathogenic microorganisms were detected in 3.7% of total samples. E. coli O157:H7 was detected in three samples of spinach (2) and beetroot ( 1 ); L. monocytogenes was detected in 14 samples of spinach ( 8 ), tomato ( 3 ), cucumber ( 2 ), and radish ( 1 ); and Salmonella spp. were detected in 16 samples of spinach ( 7 ), tomato ( 3 ), beetroot ( 2 ), cucumber ( 2 ), carrot ( 1 ), and radish ( 1 ). Pathogens were not detected in any of the cabbage and coriander samples.

  17. EFFECT OF FARMERS FIELD SCHOOL ON VEGETABLES PRODUCTION IN DISTRICT PESHAWAR KHYBER PAKHTUNKHWA

    Directory of Open Access Journals (Sweden)

    Muhammad Zafarullah KHAN

    2013-01-01

    Full Text Available The Farmers Field School (FFS aims at benefiting poor farmers by improving their knowledge of existing agricultural technologies and integrated crop management to become independent and confident in their decision. The study on effect of farmer’s field school on vegetables production before and after FFS implementation in district Peshawar in four selected villages on each crop in 2011 was conducted from 80 farmers. The results were compared by using paired t-test. It was observed that 80% of the respondents were satisfied with FFS approach as there was a significant increase in vegetable production. The seed rate of tomato and cucumber decreased from 0.185kg/kanal to 0.1 kg/ kanal and 0.120kg/kanal to 0.01kg/kanal while production of tomato and cucumber were increased from 8158.75kgs/kanal to 1030.25kgs/kanal and 3230kgs/kanal to 5340kgs/kanal, respectively after the activities of FFS. FFS brought a positive effect on vegetable production and technology adoption improving their income, skills and knowledge ultimately lead farmers towards empowerment. The input cost including seed, crop management, FYM, and weedicides for tomato were reduced by Rs.28, Rs. 3170 and Rs.658 and cucumber reduced by Rs.35, Rs.570 and Rs.430. Only fertilizers cost was increased by Rs. 2200 in case of tomato and 465 in case of cucumber. FFS facilitator and coordinator should be more skilled and practical oriented to facilitate poor farmers. In light of the above study, more FFS should be planned so that the more farmers should be benefited.

  18. Trace element toxicity in VA mycorrhizal cucumber grown on weathered coal fly ash

    Energy Technology Data Exchange (ETDEWEB)

    Dosskey, M.G.; Adriano, D.C. (University of Georgia, Aiken, SC (United States). Savannah River Ecology Lab.)

    1993-11-01

    Mycorrhizal colonization is widely recognized as enhancing plant growth on severely disturbed sites. A greenhouse pot experiment was conducted to determine if inoculation with vesicular-arbuscular mycorrhizal (VAM) fungi will enhance vegetation establishment on abandoned coal fly ash basinss, Spores of Glomus intraradices (Schenck and Smith) and Glomus etunicatum (Becker and Gerdemann) were added to weathered precipitator ash (EC-0.91 dSm[sup -1], pH 5.0) and to a pasteurized soils of the same pH (Grossarenic Paleudult, 92% sand, 1% organic matter). Some soil and ash were left unamended as non-mycorrhizal controls. Cucumber (Cucumis sativus L. cv. Poinsette 76) seeds were sown, watered regularly, and fertilized periodically with macronutrient solution. By 8 weeks all ash-grown plants exhibited smaller leaves with leaf margin curl and necrosis, and plant biomass was significantly less (0.75x) than soil-grown plants. Based on analysis of 18 elements in plant tissues, toxicity to B, Mn, or Zn could have caused growth suppression, confirming trace element problems for plant growth on fly ash. For plants grown on fly ash, G. etunicatum was the only fungus that colonized roots (20% of root length reduced from 67% on soil) and it suppressed plant growth to 0.80 x that of uninoculated ash-grown plants. Correspondingly, shoot Zn concentration in G. etunicatum-inoculated plants was 3.5 x higher than in uninoculated plants and at generally toxic levels (273 mg kg[sup -1]). Glomus etunicatum had no other significant effects on elemental concentrations. These results indicate that VAM colonization in acid, weathered fly ash suppressed plant growth by facilitating uptake of Zn to toxic levels, and implies a limitation to successful use of VAM for vegetation establishment on abandoned coal fly ash basins.

  19. Automatic Metadata Extraction - The High Energy Physics Use Case

    CERN Document Server

    Boyd, Joseph; Rajman, Martin

    Automatic metadata extraction (AME) of scientific papers has been described as one of the hardest problems in document engineering. Heterogeneous content, varying style, and unpredictable placement of article components render the problem inherently indeterministic. Conditional random fields (CRF), a machine learning technique, can be used to classify document metadata amidst this uncertainty, annotating document contents with semantic labels. High energy physics (HEP) papers, such as those written at CERN, have unique content and structural characteristics, with scientific collaborations of thousands of authors altering article layouts dramatically. The distinctive qualities of these papers necessitate the creation of specialised datasets and model features. In this work we build an unprecedented training set of HEP papers and propose and evaluate a set of innovative features for CRF models. We build upon state-of-the-art AME software, GROBID, a tool coordinating a hierarchy of CRF models in a full document ...

  20. A case for user-generated sensor metadata

    Science.gov (United States)

    Nüst, Daniel

    2015-04-01

    Cheap and easy to use sensing technology and new developments in ICT towards a global network of sensors and actuators promise previously unthought of changes for our understanding of the environment. Large professional as well as amateur sensor networks exist, and they are used for specific yet diverse applications across domains such as hydrology, meteorology or early warning systems. However the impact this "abundance of sensors" had so far is somewhat disappointing. There is a gap between (community-driven) sensor networks that could provide very useful data and the users of the data. In our presentation, we argue this is due to a lack of metadata which allows determining the fitness of use of a dataset. Syntactic or semantic interoperability for sensor webs have made great progress and continue to be an active field of research, yet they often are quite complex, which is of course due to the complexity of the problem at hand. But still, we see the most generic information to determine fitness for use is a dataset's provenance, because it allows users to make up their own minds independently from existing classification schemes for data quality. In this work we will make the case how curated user-contributed metadata has the potential to improve this situation. This especially applies for scenarios in which an observed property is applicable in different domains, and for set-ups where the understanding about metadata concepts and (meta-)data quality differs between data provider and user. On the one hand a citizen does not understand the ISO provenance metadata. On the other hand a researcher might find issues in publicly accessible time series published by citizens, which the latter might not be aware of or care about. Because users will have to determine fitness for use for each application on their own anyway, we suggest an online collaboration platform for user-generated metadata based on an extremely simplified data model. In the most basic fashion

  1. ATLAS Metadata Infrastructure Evolution for Run 2 and Beyond

    CERN Document Server

    van Gemmeren, Peter; The ATLAS collaboration; Malon, David; Vaniachine, Alexandre

    2015-01-01

    ATLAS developed and employed for Run 1 of the Large Hadron Collider a sophisticated infrastructure for metadata handling in event processing jobs. This infrastructure profits from a rich feature set provided by the ATLAS execution control framework, including standardized interfaces and invocation mechanisms for tools and services, segregation of transient data stores with concomitant object lifetime management, and mechanisms for handling occurrences asynchronous to the control framework’s state machine transitions. This metadata infrastructure is evolving and being extended for Run 2 to allow its use and reuse in downstream physics analyses, analyses that may or may not utilize the ATLAS control framework. At the same time, multiprocessing versions of the control framework and the requirements of future multithreaded frameworks are leading to redesign of components that use an incident-handling approach to asynchrony. The increased use of scatter-gather architectures, both local and distributed, requires ...

  2. Network structure, metadata and the prediction of missing nodes

    CERN Document Server

    Hric, Darko; Fortunato, Santo

    2016-01-01

    The empirical validation of community detection methods is often based on available annotations on the nodes that serve as putative indicators of the large-scale network structure. Most often, the suitability of the annotations as topological descriptors itself is not assessed, and without this it is not possible to ultimately distinguish between actual shortcomings of the community detection algorithms on one hand, and the incompleteness, inaccuracy or structured nature of the data annotations themselves on the other. In this work we present a principled method to access both aspects simultaneously. We construct a joint generative model for the data and metadata, and a non-parametric Bayesian framework to infer its parameters from annotated datasets. We assess the quality of the metadata not according to its direct alignment with the network communities, but rather in its capacity to predict the placement of edges in the network. We also show how this feature can be used to predict the connections to missing...

  3. Metadata and Data Management for the Keck Observatory Archive

    CERN Document Server

    Tran, H D; Goodrich, R W; Mader, J A; Swain, M; Laity, A C; Kong, M; Gelino, C R; Berriman, G B

    2014-01-01

    A collaboration between the W. M. Keck Observatory (WMKO) in Hawaii and the NASA Exoplanet Science Institute (NExScI) in California, the Keck Observatory Archive (KOA) was commissioned in 2004 to archive observing data from WMKO, which operates two classically scheduled 10 m ground-based telescopes. The observing data from Keck is not suitable for direct ingestion into the archive since the metadata contained in the original FITS headers lack the information necessary for proper archiving. Coupled with different standards among instrument builders and the heterogeneous nature of the data inherent in classical observing, in which observers have complete control of the instruments and their observations, the data pose a number of technical challenges for KOA. We describe the methodologies and tools that we have developed to successfully address these difficulties, adding content to the FITS headers and "retrofitting" the metadata in order to support archiving Keck data, especially those obtained before the arch...

  4. ATLAS Metadata Infrastructure Evolution for Run 2 and Beyond

    CERN Document Server

    van Gemmeren, Peter; The ATLAS collaboration; Cranshaw, Jack; Vaniachine, Alexandre

    2015-01-01

    ATLAS developed and employed for Run 1 of the Large Hadron Collider a sophisticated infrastructure for metadata handling in event processing jobs. This infrastructure profits from a rich feature set provided by the ATLAS execution control framework, including standardized interfaces and invocation mechanisms for tools and services, segregation of transient data stores with concomitant object lifetime management, and mechanisms for handling occurrences asynchronous to the control framework’s state machine transitions. This metadata infrastructure is evolving and being extended for Run 2 to allow its use and reuse in downstream physics analyses, analyses that may or may not utilize the ATLAS control framework. At the same time, multiprocessing versions of the control framework and the requirements of future multithreaded frameworks are leading to redesign of components that use an incident-handling approach to asynchrony. The increased use of scatter-gather architectures, both local and distributed, requires ...

  5. CAMELOT: Cloud Archive for MEtadata, Library and Online Toolkit

    Science.gov (United States)

    Ginsburg, Adam; Kruijssen, J. M. Diederik; Longmore, Steven N.; Koch, Eric; Glover, Simon C. O.; Dale, James E.; Commerçon, Benoît; Giannetti, Andrea; McLeod, Anna F.; Testi, Leonardo; Zahorecz, Sarolta; Rathborne, Jill M.; Zhang, Qizhou; Fontani, Francesco; Beltrán, Maite T.; Rivilla, Victor M.

    2016-05-01

    CAMELOT facilitates the comparison of observational data and simulations of molecular clouds and/or star-forming regions. The central component of CAMELOT is a database summarizing the properties of observational data and simulations in the literature through pertinent metadata. The core functionality allows users to upload metadata, search and visualize the contents of the database to find and match observations/simulations over any range of parameter space. To bridge the fundamental disconnect between inherently 2D observational data and 3D simulations, the code uses key physical properties that, in principle, are straightforward for both observers and simulators to measure — the surface density (Sigma), velocity dispersion (sigma) and radius (R). By determining these in a self-consistent way for all entries in the database, it should be possible to make robust comparisons.

  6. Data Bookkeeping Service 3 - Providing event metadata in CMS

    CERN Document Server

    Giffels, Manuel; Riley, Daniel

    2014-01-01

    The Data Bookkeeping Service 3 provides a catalog of event metadata for Monte Carlo and recorded data of the Compact Muon Solenoid (CMS) experiment at the Large Hadron Collider (LHC) at CERN, Geneva. It comprises all necessary information for tracking datasets, their processing history and associations between runs, files and datasets, on a large scale of about $200,000$ datasets and more than $40$ million files, which adds up in around $700$ GB of metadata. The DBS is an essential part of the CMS Data Management and Workload Management (DMWM) systems, all kind of data-processing like Monte Carlo production, processing of recorded event data as well as physics analysis done by the users are heavily relying on the information stored in DBS.

  7. The ground truth about metadata and community detection in networks

    CERN Document Server

    Peel, Leto; Clauset, Aaron

    2016-01-01

    Across many scientific domains, there is common need to automatically extract a simplified view or a coarse-graining of how a complex system's components interact. This general task is called community detection in networks and is analogous to searching for clusters in independent vector data. It is common to evaluate the performance of community detection algorithms by their ability to find so-called \\textit{ground truth} communities. This works well in synthetic networks with planted communities because such networks' links are formed explicitly based on the planted communities. However, there are no planted communities in real world networks. Instead, it is standard practice to treat some observed discrete-valued node attributes, or metadata, as ground truth. Here, we show that metadata are not the same as ground truth, and that treating them as such induces severe theoretical and practical problems. We prove that no algorithm can uniquely solve community detection, and we prove a general No Free Lunch the...

  8. Getting Data Should be Easy! Working with NASA to Improve Earth Science Data Accessibility with Metadata

    Science.gov (United States)

    le Roux, J.

    2016-12-01

    One of the key components of Earth Science data stewardship is high quality metadata. Ideally, all Earth Science/ Earth Observation datasets should be accompanied by a comprehensive metadata record including information such as: where to download data, the data format, the data temporal and spatial resolution, instruments used, and the purpose of the data collection (to name a few). While there are metadata formats and standards in place for NASA Earth Science data, many records either fail to provide critical information, or the information provided may be inaccurate, inconsistent, or outdated. The ARC Team at Marshall Space Flight Center has been working to improve the quality of records in the Common Metadata Repository (CMR), which serves as the authoritative management system for all NASA EOSDIS metadata. This process requires direct collaboration with personnel at NASA Distributed Active Archive Centers (DAACs) to ensure that their metadata holdings in CMR are optimal for search and discovery. The first DAAC to undergo a metadata review was the Global Hydrology Resource Center (GHRC). In this presentation, we will describe challenges and lessons learned from the metadata review process undertaken with GHRC. These lessons pave the way for a more efficient metadata review process with other DAACs in the future, which will ultimately result in improved data search capabilities for CMR users. A quantitative overview of improvements made to GHRC metadata since the start of its review process will also be provided.

  9. ISO, FGDC, DIF and Dublin Core - Making Sense of Metadata Standards for Earth Science Data

    Science.gov (United States)

    Jones, P. R.; Ritchey, N. A.; Peng, G.; Toner, V. A.; Brown, H.

    2014-12-01

    Metadata standards provide common definitions of metadata fields for information exchange across user communities. Despite the broad adoption of metadata standards for Earth science data, there are still heterogeneous and incompatible representations of information due to differences between the many standards in use and how each standard is applied. Federal agencies are required to manage and publish metadata in different metadata standards and formats for various data catalogs. In 2014, the NOAA National Climatic data Center (NCDC) managed metadata for its scientific datasets in ISO 19115-2 in XML, GCMD Directory Interchange Format (DIF) in XML, DataCite Schema in XML, Dublin Core in XML, and Data Catalog Vocabulary (DCAT) in JSON, with more standards and profiles of standards planned. Of these standards, the ISO 19115-series metadata is the most complete and feature-rich, and for this reason it is used by NCDC as the source for the other metadata standards. We will discuss the capabilities of metadata standards and how these standards are being implemented to document datasets. Successful implementations include developing translations and displays using XSLTs, creating links to related data and resources, documenting dataset lineage, and establishing best practices. Benefits, gaps, and challenges will be highlighted with suggestions for improved approaches to metadata storage and maintenance.

  10. Metadata and API Based Environment Aware Content Delivery Architecture

    Institute of Scientific and Technical Information of China (English)

    2006-01-01

    One of the limitations of current content delivery networks is lack of support for environment aware content delivery. This paper first discusses the requirements of such support, and proposes a new metadata gateway based environment aware content delivery architecture. The paper discusses in some details key functions and technologies of environment aware content delivery architecture, including its APIs and control policies. Finally the paper presents an application to illustrate advantages of environment aware content delivery architecture in the context of next generation network.

  11. Automated Atmospheric Composition Dataset Level Metadata Discovery. Difficulties and Surprises

    Science.gov (United States)

    Strub, R. F.; Falke, S. R.; Kempler, S.; Fialkowski, E.; Goussev, O.; Lynnes, C.

    2015-12-01

    The Atmospheric Composition Portal (ACP) is an aggregator and curator of information related to remotely sensed atmospheric composition data and analysis. It uses existing tools and technologies and, where needed, enhances those capabilities to provide interoperable access, tools, and contextual guidance for scientists and value-adding organizations using remotely sensed atmospheric composition data. The initial focus is on Essential Climate Variables identified by the Global Climate Observing System - CH4, CO, CO2, NO2, O3, SO2 and aerosols. This poster addresses our efforts in building the ACP Data Table, an interface to help discover and understand remotely sensed data that are related to atmospheric composition science and applications. We harvested GCMD, CWIC, GEOSS metadata catalogs using machine to machine technologies - OpenSearch, Web Services. We also manually investigated the plethora of CEOS data providers portals and other catalogs where that data might be aggregated. This poster is our experience of the excellence, variety, and challenges we encountered.Conclusions:1.The significant benefits that the major catalogs provide are their machine to machine tools like OpenSearch and Web Services rather than any GUI usability improvements due to the large amount of data in their catalog.2.There is a trend at the large catalogs towards simulating small data provider portals through advanced services. 3.Populating metadata catalogs using ISO19115 is too complex for users to do in a consistent way, difficult to parse visually or with XML libraries, and too complex for Java XML binders like CASTOR.4.The ability to search for Ids first and then for data (GCMD and ECHO) is better for machine to machine operations rather than the timeouts experienced when returning the entire metadata entry at once. 5.Metadata harvest and export activities between the major catalogs has led to a significant amount of duplication. (This is currently being addressed) 6.Most (if not

  12. Metadata Embeddings for User and Item Cold-start Recommendations

    OpenAIRE

    Kula, Maciej

    2015-01-01

    I present a hybrid matrix factorisation model representing users and items as linear combinations of their content features' latent factors. The model outperforms both collaborative and content-based models in cold-start or sparse interaction data scenarios (using both user and item metadata), and performs at least as well as a pure collaborative matrix factorisation model where interaction data is abundant. Additionally, feature embeddings produced by the model encode semantic information in...

  13. The Use of Metadata Visualisation Assist Information Retrieval

    Science.gov (United States)

    2007-10-01

    aspect of the popularity scale (Ahlberg & Shneirderman, 1994). The different genres (including drama, mystery, comedy, western, horror , action etc...organised with metadata for each item within the library, providing information describing the author, the genre , the title, the publisher, the year it...album title, the track length and the genre of music. Again, any of these pieces of information can be used to quickly search and locate specific

  14. The ATLAS Eventlndex: data flow and inclusion of other metadata

    Science.gov (United States)

    Barberis, D.; Cárdenas Zárate, S. E.; Favareto, A.; Fernandez Casani, A.; Gallas, E. J.; Garcia Montoro, C.; Gonzalez de la Hoz, S.; Hrivnac, J.; Malon, D.; Prokoshin, F.; Salt, J.; Sanchez, J.; Toebbicke, R.; Yuan, R.; ATLAS Collaboration

    2016-10-01

    The ATLAS EventIndex is the catalogue of the event-related metadata for the information collected from the ATLAS detector. The basic unit of this information is the event record, containing the event identification parameters, pointers to the files containing this event as well as trigger decision information. The main use case for the EventIndex is event picking, as well as data consistency checks for large production campaigns. The EventIndex employs the Hadoop platform for data storage and handling, as well as a messaging system for the collection of information. The information for the EventIndex is collected both at Tier-0, when the data are first produced, and from the Grid, when various types of derived data are produced. The EventIndex uses various types of auxiliary information from other ATLAS sources for data collection and processing: trigger tables from the condition metadata database (COMA), dataset information from the data catalogue AMI and the Rucio data management system and information on production jobs from the ATLAS production system. The ATLAS production system is also used for the collection of event information from the Grid jobs. EventIndex developments started in 2012 and in the middle of 2015 the system was commissioned and started collecting event metadata, as a part of ATLAS Distributed Computing operations.

  15. Embedding Metadata and Other Semantics in Word Processing Documents

    Directory of Open Access Journals (Sweden)

    Peter Sefton

    2009-10-01

    Full Text Available This paper describes a technique for embedding document metadata, and potentially other semantic references inline in word processing documents, which the authors have implemented with the help of a software development team. Several assumptions underly the approach; It must be available across computing platforms and work with both Microsoft Word (because of its user base and OpenOffice.org (because of its free availability. Further the application needs to be acceptable to and usable by users, so the initial implementation covers only small number of features, which will only be extended after user-testing. Within these constraints the system provides a mechanism for encoding not only simple metadata, but for inferring hierarchical relationships between metadata elements from a ‘flat’ word processing file.The paper includes links to open source code implementing the techniques as part of a broader suite of tools for academic writing. This addresses tools and software, semantic web and data curation, integrating curation into research workflows and will provide a platform for integrating work on ontologies, vocabularies and folksonomies into word processing tools.

  16. Heterogeneity Analysis of Cucumber Canopy in the Solar Greenhouse

    Institute of Scientific and Technical Information of China (English)

    QIAN Ting-ting; LU Sheng-lian; ZHAO Chun-jiang; GUO Xin-yu; WEN Wei-liang; DU jian-jun

    2014-01-01

    Detailed analysis of canopy structural heterogeneity is an essential step in conducting parameters for a canopy structural model. This paper aims to analyze the structural heterogeneity of a cucumber (Cucumis sativus L.) canopy by means of analyzing leaf distribution in a greenhouse environment with natural sunlight and also to assess the effect of structural canopy heterogeneity on light interception and photosynthesis. Two experiments and four measurements were carried out in autumn 2011 and spring 2012. A static virtual three-dimensional (3D) canopy structure was reconstructed using a 3D digitizing method. The diurnal variation of photosynthesis rate was measured using CIRAS-2 photosynthesis system. The results showed that, leaf azimuth as tested with the Rayleigh-test was homogeneous at vine tip over stage but turned heterogeneous at fruit harvest stage. After eliminating the inlfuence of the environment on the azimuth using the von Mises-Fisher method, the angle between two successive leaves was 144°;at the same time, a rule for the azimuth distribution in the canopy was established, stating that the azimuth distribution in cucumber followed a law which was positive spin and anti-spin. Leaf elevation angle of south-oriented leaves was on average 13.8° higher than that of north-oriented leaves. The horizontal distribution of light interception and photosynthesis differed signiifcantly between differently oriented leaves. East-and west-oriented leaves exhibited the highest photosynthetic rate. In conclusion, detailed analysis of canopy structural heterogeneity in this study indicated that leaf azimuth and elevation angle were heterogeneous in cucumber canopy and they should be explicitly described as they have a great impact both on light distribution and photosynthesis.

  17. Nutritional components of the sea cucumber Holothuria scabra

    Directory of Open Access Journals (Sweden)

    Morakot Sroyraya

    2017-03-01

    Full Text Available Background: Holothuria scabrais one of the most commercially important species found in the Pacific region. The sea cucumber extracts have been widely reported to have beneficial health effects.The aim of this study was to determine the nutritional compositions of H. scabra, and compare its important nutritional contents with that of other species.Methods:The sea cucumbers were dissected, sliced into small pieces,and then freeze-dried. The nutritional compositions, including proximate composition, amino acids, fatty acids,collagen, GABA, Vitamin A, C, and E of the whole body and body wall of H. scabra,were analyzed.Results:H. scabra contained a high quantity of protein (22.50% in whole body and 55.18% in body wall and very low lipids (1.55% in whole body and 1.02% in body wall. The three most abundant amino acids found in both the whole body and body wall were glycine, glutamic acid, and proline. The main fatty acids found in the whole body were stearic acid and nervonic acid, and in the body wall were arachidonic acid and stearic acid. The whole body and body wall also contained high levels of essential amino acids, essential fatty acids, and collagen, in addition to moderate amounts of vitamin E and low amounts of GABA and vitamin C.Conclusions:The sea cucumber, H. scabra, contained high quantity of protein and very low lipid. It containedhigh essential amino acids, essential fatty acids, nervonic and arachidonic acids, and collagen, which also contained GABA, vitamin C, and vitamin E.

  18. Metadata Wizard: an easy-to-use tool for creating FGDC-CSDGM metadata for geospatial datasets in ESRI ArcGIS Desktop

    Science.gov (United States)

    Ignizio, Drew A.; O'Donnell, Michael S.; Talbert, Colin B.

    2014-01-01

    Creating compliant metadata for scientific data products is mandated for all federal Geographic Information Systems professionals and is a best practice for members of the geospatial data community. However, the complexity of the The Federal Geographic Data Committee’s Content Standards for Digital Geospatial Metadata, the limited availability of easy-to-use tools, and recent changes in the ESRI software environment continue to make metadata creation a challenge. Staff at the U.S. Geological Survey Fort Collins Science Center have developed a Python toolbox for ESRI ArcDesktop to facilitate a semi-automated workflow to create and update metadata records in ESRI’s 10.x software. The U.S. Geological Survey Metadata Wizard tool automatically populates several metadata elements: the spatial reference, spatial extent, geospatial presentation format, vector feature count or raster column/row count, native system/processing environment, and the metadata creation date. Once the software auto-populates these elements, users can easily add attribute definitions and other relevant information in a simple Graphical User Interface. The tool, which offers a simple design free of esoteric metadata language, has the potential to save many government and non-government organizations a significant amount of time and costs by facilitating the development of The Federal Geographic Data Committee’s Content Standards for Digital Geospatial Metadata compliant metadata for ESRI software users. A working version of the tool is now available for ESRI ArcDesktop, version 10.0, 10.1, and 10.2 (downloadable at http:/www.sciencebase.gov/metadatawizard).

  19. Study on Relationship Between Cucumber Germplasm and Propa-mocarb Residue Using Subjective Rating Technique

    Institute of Scientific and Technical Information of China (English)

    Wu Peng; Qin Zhi-wei; Zhou Xiu-yan; Wu Tao; Xin Ming; Guo Qian-qian

    2014-01-01

    Propamocarb (PM) residue in cucumber (Cucumis sativus L.) receives little attention. As is well known to all, high PM residue of cucumber could lead to increase in the violation rates of maximum residue limits and ultimately cause harm to human health. Knowledge of PM residue could help cucumber breeders in developing cultivars with low PM residue and improving cucumber quality. In this study, 32 representative cucumber accessions (26 breeding lines and six cultivars) from different regions of China were evaluated for their PM residue in fruit and leaf to provide meaning to the subjective rating, which was highly correlated with PM residual content of fruit (r=0.97) and leaf (r=0.94). In addition, PM residual content of North China ecotype was the highest and Pickling ecotype was the lowest in fruit and leaf of cucumber. The leaf had significantly higher (P<0.01) PM residual content than the fruit, and poor correlation between leaf and fruit was represented. This study verified PM residual relationship between fruit and leaf, and laid the foundation for further identification of germplasm resources and breeding of new varieties for low PM residue of cucumber.

  20. Large-Scale Transcriptome Analysis of Cucumber and Botrytis cinerea during Infection.

    Directory of Open Access Journals (Sweden)

    Weiwen Kong

    Full Text Available Cucumber gray mold caused by Botrytis cinerea is considered one of the most serious cucumber diseases. With the advent of Hi-seq technology, it is possible to study the plant-pathogen interaction at the transcriptome level. To the best of our knowledge, this is the first application of RNA-seq to identify cucumber and B. cinerea differentially expressed genes (DEGs before and after the plant-pathogen interaction. In total, 248,908,688 raw reads were generated; after removing low-quality reads and those containing adapter and poly-N, 238,341,648 clean reads remained to map the reference genome. There were 3,512 cucumber DEGs and 1,735 B. cinerea DEGs. GO enrichment and KEGG enrichment analysis were performed on these DEGs to study the interaction between cucumber and B. cinerea. To verify the reliability and accuracy of our transcriptome data, 5 cucumber DEGs and 5 B. cinerea DEGs were chosen for RT-PCR verification. This is the first systematic transcriptome analysis of components related to the B. cinerea-cucumber interaction. Functional genes and putative pathways identified herein will increase our understanding of the mechanism of the pathogen-host interaction.