Long-term Differences in Tillage and Land Use Affect Intra-aggregate Pore Heterogeneity

International Nuclear Information System (INIS)

Kravchenko, A.N.; Wang, A.N.W.; Smucker, A.J.M.; Rivers, M.L.

2011-01-01

Recent advances in computed tomography provide measurement tools to study internal structures of soil aggregates at micrometer resolutions and to improve our understanding of specific mechanisms of various soil processes. Fractal analysis is one of the data analysis tools that can be helpful in evaluating heterogeneity of the intra-aggregate internal structures. The goal of this study was to examine how long-term tillage and land use differences affect intra-aggregate pore heterogeneity. The specific objectives were: (i) to develop an approach to enhance utility of box-counting fractal dimension in characterizing intra-aggregate pore heterogeneity; (ii) to examine intra-aggregate pores in macro-aggregates (4-6 mm in size) using the computed tomography scanning and fractal analysis, and (iii) to compare heterogeneity of intra-aggregate pore space in aggregates from loamy Alfisol soil subjected to 20 yr of contrasting management practices, namely, conventional tillage (chisel plow) (CT), no-till (NT), and native succession vegetation (NS). Three-dimensional images of the intact aggregates were obtained with a resolution of 14.6 (micro)m at the Advanced Photon Source, Argonne National Laboratory, Argonne, IL. Proposed box-counting fractal dimension normalization was successfully implemented to estimate heterogeneity of pore voxel distributions without bias associated with different porosities in soil aggregates. The aggregates from all three studied treatments had higher porosity associated with large (>100 (micro)m) pores present in their centers than in their exteriors. Pores 15 to 60 (micro)m were equally abundant throughout entire aggregates but their distributions were more heterogeneous in aggregate interiors. The CT aggregates had greater numbers of pores 15 to 60 (micro)m than NT and NS. Distribution of pore voxels belonging to large pores was most heterogeneous in the aggregates from NS, followed by NT and by CT. This result was consistent with presence of

Variable pore connectivity model linking gas diffusivity and air-phase tortuosity to soil matric potential

DEFF Research Database (Denmark)

Chamindu, Deepagoda; Møldrup, Per; Schjønning, Per

2012-01-01

information on soil functional pore structure, e.g., pore network tortuosity and connectivity, can also be revealed from Dp/Do–ψ relations. Based on Dp/Do measurements in a wide range of soil types across geographically remote vadose zone profiles, this study analyzed pore connectivity for the development...... of a variable pore connectivity factor, X, as a function of soil matric potential, expressed as pF (=log |−ψ|), for pF values ranging from 1.0 to 3.5. The new model takes the form of X = X* (F/F*)A with F = 1 + pF−1, where X* is the pore network tortuosity at reference F (F*) and A is a model parameter......- and intraaggregate pore regions of aggregated soils. We further suggest that the new model with parameter values of X* = 1.7 and A = 0 may be used for upper limit Dp/Do predictions in risk assessments of, e.g., fluxes of toxic volatile organics from soil to indoor air at polluted soil sites....

Pore-Water Carbonate and Phosphate As Predictors of Arsenate Toxicity in Soil.

Science.gov (United States)

Lamb, Dane T; Kader, Mohammed; Wang, Liang; Choppala, Girish; Rahman, Mohammad Mahmudur; Megharaj, Mallavarapu; Naidu, Ravi

2016-12-06

Phytotoxicity of inorganic contaminants is influenced by the presence of competing ions at the site of uptake. In this study, interaction of soil pore-water constituents with arsenate toxicity was investigated in cucumber (Cucumis sativa L) using 10 contrasting soils. Arsenate phytotoxicity was shown to be related to soluble carbonate and phosphate. The data indicated that dissolved phosphate and carbonate had an antagonistic impact on arsenate toxicity to cucumber. To predict arsenate phytotoxicity in soils with a diverse range of soil solution properties, both carbonate and phosphate were required. The relationship between arsenic and pore-water toxicity parameters was established initially using multiple regression. In addition, based on the relationship with carbonate and phosphate we successively applied a terrestrial biotic ligand-like model (BLM) including carbonate and phosphate. Estimated effective concentrations from the BLM-like parametrization were strongly correlated to measured arsenate values in pore-water (R 2 = 0.76, P soils.

Active Pore Volume in Danish Peat Soils

DEFF Research Database (Denmark)

Forsmann, Ditte M.; Kjærgaard, Charlotte

2012-01-01

Phosphorus release within the soil matrix caused by the changed redox conditions due to re-establishment of a riparian wetland can be critical for the aquatic environment. However, phosphorous released in the soil will not always result in an immediate contribution to this loss to the aquatic...... environment. Lowland soils are primarily peat soils, and only a minor part of the total soil volume of peat soils is occupied by macropores (>30 µm). Since water primarily flows in these macropores, the majority of the soil matrix is bypassed (the immobile domain). Phosphorus released in the immobile domain...... is not actively transported out of the system, but is only transported via diffusion, which is a very slow process. Thus it is interesting to investigate the size of the active pore volume in peat soils. The hypothesis of this study is that the active pores volume of a peat soil can be expressed using bulk...

WET-sensor pore water EC calibration for three horticultural soils

NARCIS (Netherlands)

Balendonck, J.; Bruins, M.A.; Wattimena, M.R.; Voogt, W.; Huys, A.

2005-01-01

The WET-sensor is a frequency domain dielectric sensor that measures permittivity, conductivity and temperature, which can be used for monitoring soil water content and electrical conductivity in horticulture. By using a specific model it measures pore water conductivity as well. However, under

Field sampling of soil pore water to evaluate trace element mobility and associated environmental risk

Energy Technology Data Exchange (ETDEWEB)

Moreno-Jimenez, Eduardo, E-mail: eduardo.moreno@uam.es [Departamento de Quimica Agricola, Universidad Autonoma de Madrid, 28049 Madrid (Spain); Beesley, Luke [James Hutton Institute, Craigiebuckler, Aberdeen AB15 8QH (United Kingdom); Lepp, Nicholas W. [35, Victoria Road, Formby, Liverpool L37 7DH (United Kingdom); Dickinson, Nicholas M. [Department of Ecology, Lincoln University, Lincoln 7647, PO Box 84 (New Zealand); Hartley, William [School of Computing, Science and Engineering, University of Salford, Cockcroft Building, Salford, M5 4WT (United Kingdom); Clemente, Rafael [Dep. of Soil and Water Conservation and Organic Waste Management, CEBAS-CSIC, Campus Universitario de Espinardo, PO Box 164, 30100 Espinardo, Murcia (Spain)

2011-10-15

Monitoring soil pollution is a key aspect in sustainable management of contaminated land but there is often debate over what should be monitored to assess ecological risk. Soil pore water, containing the most labile pollutant fraction in soils, can be easily collected in situ offering a routine way to monitor this risk. We present a compilation of data on concentration of trace elements (As, Cd, Cu, Pb, and Zn) in soil pore water collected in field conditions from a range of polluted and non-polluted soils in Spain and the UK during single and repeated monitoring, and propose a simple eco-toxicity test using this media. Sufficient pore water could be extracted for analysis both under semi-arid and temperate conditions, and eco-toxicity comparisons could be effectively made between polluted and non-polluted soils. We propose that in-situ pore water extraction could enhance the realism of risk assessment at some contaminated sites. - Highlights: > In situ pore water sampling successfully evaluates trace elements mobility in soils. > Field sampling proved robust for different soils, sites and climatic regimes. > Measurements may be directly related to ecotoxicological assays. > Both short and long-term monitoring of polluted lands may be achieved. > This method complements other widely used assays for environmental risk assessment. - In situ pore water sampling from a wide variety of soils proves to be a beneficial application to monitor the stability of pollutants in soils and subsequent risk through mobility.

Effect of long-term organic fertilization on the soil pore characteristics of greenhouse vegetable fields converted from rice-wheat rotation fields.

Science.gov (United States)

Xu, L Y; Wang, M Y; Shi, X Z; Yu, Q B; Shi, Y J; Xu, S X; Sun, W X

2018-08-01

The shift from rice-wheat rotation (RWR) to greenhouse vegetable soils has been widely practiced in China. Several studies have discussed the changes in soil properties with land-use changes, but few studies have sought to address the differences in soil pore properties, especially for fields based on long-term organic fertilization under greenhouse vegetable system from RWR fields. This study uses the X-ray computed tomography (CT) scanning and statistical analysis to compare the long-term effects of the conversion of organic greenhouse vegetable fields (over one year, nine years, and fourteen years) from RWR fields on the soil macropore structure as well as the influencing factors from samples obtained in Nanjing, Jiangsu, China, using the surface soil layer and triplicate samples. The results demonstrated that the macropore structure became more complex and stable, with a higher connectivity, fractal dimension (FD) and a lower degree of anisotropy (DA), as the greenhouse vegetable planting time increased. The total topsoil macroporosity increased considerably, but the rate of increase gradually decelerated with time. The transmission pores (round pores ranging from 50 to 500μm) increased with time, but the biopores (>2000μm) clearly decreased after nine years of use as greenhouse vegetable fields. Soil organic matter (OM) has a significant relationship with the soil pore structure characteristics, especially for the transmission pores. In addition, organic fertilization on the topsoil had a short-term effect on the pores, but the effect stabilized and had a weak influence on the pores over longer periods. These results suggested that organic fertilization was conducive for controlling soil degradation regarding it physical quality for water and oxygen availability in the short term. Copyright © 2018 Elsevier B.V. All rights reserved.

Pore Pressure Response to Groundwater Fluctuations in Saturated Double-Layered Soil

Directory of Open Access Journals (Sweden)

Hongwei Ying

2015-01-01

Full Text Available Analytical solutions are developed for one-dimensional consolidation of double-layered saturated soil subjected to groundwater fluctuations. The solutions are derived by an explicit mathematical procedure using Duhamel’s theorem in conjunction with a Fourier series, when groundwater fluctuation is described by a general time-dependent function and assumed to be the pore water pressure variations at the upper boundary. Taking as an example the harmonic groundwater fluctuation, the relevant response of the excess pore water pressure is discussed in detail, and the main influencing factors of the excess pore pressure distribution are analyzed. A dimensionless parameter θ has been introduced because it significantly affects the phase and the amplitude of excess pore pressures. The influences of the coefficients of permeability and compressibility of soil on the excess pore pressure distribution are different and cannot be incorporated into the coefficient of consolidation in double-layered soil. The relative permeability ratio of two clayey soils also plays an important role on the curves of the distributions of the excess pore pressures. The effects of the thickness of the soil layer on the excess pore pressure distribution should be considered together with the dimensionless parameter θ and the permeability and compressibility of the double-layered soil system.

Pore-scale investigation on the response of heterotrophic respiration to moisture conditions in heterogeneous soils

Energy Technology Data Exchange (ETDEWEB)

Yan, Zhifeng; Liu, Chongxuan; Todd-Brown, Katherine E.; Liu, Yuanyuan; Bond-Lamberty, Ben; Bailey, Vanessa L.

2016-11-15

The relationship between microbial respiration rate and soil moisture content is an important property for understanding and predicting soil organic carbon degradation, CO₂ production and emission, and their subsequent effects on climate change. This paper reports a pore-scale modeling study to investigate the response of heterotrophic respiration to moisture conditions in soils and to evaluate various factors that affect this response. X-ray computed tomography was used to derive soil pore structures, which were then used for pore-scale model investigation. The pore-scale results were then averaged to calculate the effective respiration rates as a function of water content in soils. The calculated effective respiration rate first increases and then decreases with increasing soil water content, showing a maximum respiration rate at water saturation degree of 0.75 that is consistent with field and laboratory observations. The relationship between the respiration rate and moisture content is affected by various factors, including pore-scale organic carbon bioavailability, the rate of oxygen delivery, soil pore structure and physical heterogeneity, soil clay content, and microbial drought resistivity. Simulations also illustrates that a larger fraction of CO₂ produced from microbial respiration can be accumulated inside soil cores under higher saturation conditions, implying that CO₂ flux measured on the top of soil cores may underestimate or overestimate true soil respiration rates under dynamic moisture conditions. Overall, this study provides mechanistic insights into the soil respiration response to the change in moisture conditions, and reveals a complex relationship between heterotrophic microbial respiration rate and moisture content in soils that is affected by various hydrological, geochemical, and biophysical factors.

A pore-scale study of fracture dynamics in rock using X-ray micro-CT under ambient freeze-thaw cycling.

Science.gov (United States)

De Kock, Tim; Boone, Marijn A; De Schryver, Thomas; Van Stappen, Jeroen; Derluyn, Hannelore; Masschaele, Bert; De Schutter, Geert; Cnudde, Veerle

2015-03-03

Freeze-thaw cycling stresses many environments which include porous media such as soil, rock and concrete. Climate change can expose new regions and subject others to a changing freeze-thaw frequency. Therefore, understanding and predicting the effect of freeze-thaw cycles is important in environmental science, the built environment and cultural heritage preservation. In this paper, we explore the possibilities of state-of-the-art micro-CT in studying the pore scale dynamics related to freezing and thawing. The experiments show the development of a fracture network in a porous limestone when cooling to -9.7 °C, at which an exothermal temperature peak is a proxy for ice crystallization. The dynamics of the fracture network are visualized with a time frame of 80 s. Theoretical assumptions predict that crystallization in these experiments occurs in pores of 6-20.1 nm under transient conditions. Here, the crystallization-induced stress exceeds rock strength when the local crystal fraction in the pores is 4.3%. The location of fractures is strongly related to preferential water uptake paths and rock texture, which are visually identified. Laboratory, continuous X-ray micro-CT scanning opens new perspectives for the pore-scale study of ice crystallization in porous media as well as for environmental processes related to freeze-thaw fracturing.

Accounting for sub-resolution pores in models of water and solute transport in soils based on computed tomography images: Are we there yet?

Science.gov (United States)

Baveye, Philippe C.; Pot, Valérie; Garnier, Patricia

2017-12-01

In the last decade, X-ray computed tomography (CT) has become widely used to characterize the geometry and topology of the pore space of soils and natural porous media. Regardless of the resolution of CT images, a fundamental problem associated with their use, for example as a starting point in simulation efforts, is that sub-resolution pores are not detected. Over the last few years, a particular type of modeling method, known as ;Grey; or ;Partial Bounce Back; Lattice-Boltzmann (LB), has been adopted by increasing numbers of researchers to try to account for sub-resolution pores in the modeling of water and solute transport in natural porous media. In this short paper, we assess the extent to which Grey LB methods indeed offer a workable solution to the problem at hand. We conclude that, in spite of significant computational advances, a major experimental hurdle related to the evaluation of the penetrability of sub-resolution pores, is blocking the way ahead. This hurdle will need to be cleared before Grey LB can become a credible option in the microscale modeling of soils and sediments. A necessarily interdisciplinary effort, involving both modelers and experimentalists, is needed to clear the path forward.

Soil Pore Network Visualisation and Quantification using ImageJ

DEFF Research Database (Denmark)

Garbout, Amin; Pajor, Radoslaw; Otten, Wilfred

Abstract Soil is one of the most complex materials on the earth, within which many biological, physical and chemical processes that support life and affect climate change take place. A much more detailed knowledge of the soil system is required to improve our ability to develop soil management...... strategies to preserve this limited resource. Many of those processes occur at micro scales. For long our ability to study soils non-destructively at microscopic scales has been limited, but recent developments in the use of X-ray Computed Tomography has offered great opportunities to quantify the 3-D...... geometry of soil pores. In this study we look at how networks that summarize the geometry of pores in soil are affected by soil structure. One of the objectives is to develop a robust and reproducible image analysis technique to produce quantitative knowledge on soil architecture from high resolution 3D...

Influence of pore structure on carbon retention/loss in soil macro-aggregates

Science.gov (United States)

Quigley, Michelle; Kravchenko, Alexandra; Rivers, Mark

2017-04-01

Carbon protection within soil macro-aggregates is an important component of soil carbon sequestration. Pores, as the transportation network for microorganisms, water, air and nutrients within macro-aggregates, are among the factors controlling carbon protection through restricting physical accessibility of carbon to microorganisms. The understanding of how the intra-aggregate pore structure relates to the degree of carbon physical protection, however, is currently lacking. This knowledge gap can lead to potentially inaccurate models and predictions of soil carbon's fate and storage in future changing climates. This study utilized the natural isotopic difference between C3 and C4 plants to trace the location of newly added carbon within macro-aggregates before and after decomposition and explored how location of this carbon relates to characteristics of intra-aggregate pores. To mimic the effect of decomposition, aggregates were incubated at 23˚ C for 28 days. Computed micro-tomographic images were used to determine pore characteristics at 6 μm resolution before and after incubation. Soil (0-10 cm depth) from a 20 year continuous corn (C4 plant) experiment was used. Two soil treatments were considered: 1) "destroyed-structure", where 1 mm sieved soil was used and 2) "intact-structure", where intact blocks of soil were used. Cereal rye (Secale cereale L.) (C3 plant) was grown in the planting boxes (2 intact, 3 destroyed, and one control) for three months in a greenhouse. From each box, ˜5 macro-aggregates of ˜5 mm size were collected for a total of 27 macro-aggregates. Half of the aggregates were cut into 5-11 sections, with relative positions of the sections within the aggregate recorded, and analyzed for δ13C. The remaining aggregates were incubated and then subjected to cutting and δ13C analysis. While there were no significant differences between the aggregate pore size distributions of the two treatments, the roles that specific pores sizes played in

Conservation agriculture effects on soil pore characteristics

DEFF Research Database (Denmark)

Munkholm, Lars Juhl; Abdollahi, Lotfollah

ploughing to a depth of 20 cm (MP), harrowing to a depth of 8-10 cm (H) and direct drilling (D). Minimally disturbed core samples were taken at 4-8, 12-16 and 18-27 cm depths 11 years after experimental start. Water retention characteristics were measured for a range of matric potential ranging from -10......Conservation tillage in combination with crop rotation, residue management and cover crops are key components of conservation agriculture. A positive long-term effect of applying all components of conservation agriculture on soil structural quality is expected. However, there is a lack...... of quantitative knowledge to support this statement. This study examines the long-term effects of crop rotations, residue management and tillage on soil pore characteristics of two sandy loam soils in Denmark. Results are reported from a split plot field experiment rotation as main plot factor and tillage...

Influence of pore size distributions on decomposition of maize leaf residue: evidence from X-ray computed micro-tomography

Science.gov (United States)

Negassa, Wakene; Guber, Andrey; Kravchenko, Alexandra; Rivers, Mark

2014-05-01

Soil's potential to sequester carbon (C) depends not only on quality and quantity of organic inputs to soil but also on the residence time of the applied organic inputs within the soil. Soil pore structure is one of the main factors that influence residence time of soil organic matter by controlling gas exchange, soil moisture and microbial activities, thereby soil C sequestration capacity. Previous attempts to investigate the fate of organic inputs added to soil did not allow examining their decomposition in situ; the drawback that can now be remediated by application of X-ray computed micro-tomography (µ-CT). The non-destructive and non-invasive nature of µ-CT gives an opportunity to investigate the effect of soil pore size distributions on decomposition of plant residues at a new quantitative level. The objective of this study is to examine the influence of pore size distributions on the decomposition of plant residue added to soil. Samples with contrasting pore size distributions were created using aggregate fractions of five different sizes (pieces of maize leaves 2.5 mg in size (equivalent to 1.71 mg C g-1 soil) were added to half of the studied samples. Samples with and without maize leaves were incubated for 120 days. CO2 emission from the samples was measured at regular time intervals. In order to ensure that the observed differences are due to differences in pore structure and not due to differences in inherent properties of the studied aggregate fractions, we repeated the whole experiment using soil from the same aggregate size fractions but ground to six replicated samples were used for intact and ground samples of all sizes with and without leaves. Two replications of the intact aggregate fractions of all sizes with leaves were subjected to µ-CT scanning before and after incubation, whereas all the remaining replications of both intact and ground aggregate fractions of <0.05, 0.05-0.1, and 1.0-2.0 mm sizes with leaves were scanned with µ-CT after

Micro X-ray CT imaging of pore-scale changes in unconsolidated sediment under confining pressure

Science.gov (United States)

Schindler, M.; Prasad, M.

2017-12-01

Micro X-ray computed tomography was used to image confining-pressure induced changes in a dry, unconsolidated quartz sand pack while simultaneously recording ultrasonic P-wave velocities. The experiments were performed under in-situ pressure of up to 4000 psi. The majority of digital rock physics studies rely on micro CT images obtained under ambient pressure and temperature conditions although effective rock properties strongly depend on in situ conditions. Goal of this work is to be able to obtain micro CT images of rock samples while pore and confining pressure is applied. Simultaneously we recorded ultrasonic P-wave velocities. The combination of imaging and velocity measurements provides insight in pore-scale changes in the rock and their influence on elastic properties. We visually observed a reduction in porosity by more than a third of the initial value as well as extensive grain damage, changes in pore and grain size distribution and an increase in contact number and contact radius with increasing confining pressure. An increase in measured ultrasonic P-wave velocities with increasing pressure was observed. We used porosity, contact number and contact radius obtained from micro CT images to model P-wave velocity with the contact-radius model by Bachrach et al. (1998). Our observations showed that the frame of unconsolidated sediments is significantly altered starting at pressures of only 1000 psi. This finding indicates that common assumptions in rock physics models (the solid frame remains unchanged) are violated for unconsolidated sediments. The effects on the solid frame should be taken into account when modeling the pressure dependence of elastic rock properties.

Quantifying vertical stress transmission and compaction-induced soil structure using sensor mat and X-ray computed tomography

DEFF Research Database (Denmark)

Naveed, Muhammad; Schjønning, Per; Keller, Thomas

2016-01-01

tillage. In this study, partially confined uniaxial compression tests were carried out on intact topsoil columns placed on subsoil columns. Two methods were employed for estimation of stress transmission in soil: (i) soil deformation patterns were quantified using X-ray CT and converted to stress......Accurate estimation of stress transmission in soil and quantification of compaction-induced soil pore structure is important for efficient soil use and management. Continuum mechanics have so far mostly been applied for agricultural soils, even if topsoil structure is aggregated due to regular...... distributions, and (ii) a tactile sensor mat was employed for measuring stresses at the interface of the topsoil and subsoil columns. The resulting soil pore structure under applied stresses was quantified using X-ray CT and by air-permeability measurements. In topsoil discrete stress transmission patterns were...

X-ray CT and laboratory measurements on glacial till subsoil cores – assessment of inherent and compaction-affected soil structure characteristics

DEFF Research Database (Denmark)

Lamandé, Mathieu; Wildenschild, Dorthe; Berisso, Feto Esimo

2013-01-01

The aim of this study was to articulate the potential of medical computed tomographic (CT) scanning for analyzing soil structure (macroporosity, soil matrix density, number of macropores) and how these estimates compare with, and complement, traditional laboratory measurements (bulk density, total...... of visualization and traditional laboratory measurements proved valuable in identifying the persistent effects of subsoil compaction and the differences in soil structure among the two investigated subsoil layers. However, we recommend to systematically perform a sensitivity analysis to the segmentation threshold...... porosity, effective air-filled porosity, and air permeability). Undisturbed soil cores were sampled at two depths (0.35 and 0.7 m) in a long-term soil compaction experiment in southern Sweden 14 years after its establishment. Persistence of subsoil compaction was detectable by CT-estimated soil matrix...

Modeling of carbonate reservoir variable secondary pore space based on CT images

Science.gov (United States)

Nie, X.; Nie, S.; Zhang, J.; Zhang, C.; Zhang, Z.

2017-12-01

Digital core technology has brought convenience to us, and X-ray CT scanning is one of the most common way to obtain 3D digital cores. However, it can only provide the original information of the only samples being scanned, and we can't modify the porosity of the scanned cores. For numerical rock physical simulations, a series of cores with variable porosities are needed to determine the relationship between the physical properties and porosity. In carbonate rocks, the secondary pore space including dissolution pores, caves and natural fractures is the key reservoir space, which makes the study of carbonate secondary porosity very important. To achieve the variation of porosities in one rock sample, based on CT scanned digital cores, according to the physical and chemical properties of carbonate rocks, several mathematical methods are chosen to simulate the variation of secondary pore space. We use the erosion and dilation operations of mathematical morphology method to simulate the pore space changes of dissolution pores and caves. We also use the Fractional Brownian Motion model to generate natural fractures with different widths and angles in digital cores to simulate fractured carbonate rocks. The morphological opening-and-closing operations in mathematical morphology method are used to simulate distribution of fluid in the pore space. The established 3D digital core models with different secondary porosities and water saturation status can be used in the study of the physical property numerical simulations of carbonate reservoir rocks.

Laboratory characterization of shale pores

Science.gov (United States)

Nur Listiyowati, Lina

2018-02-01

To estimate the potential of shale gas reservoir, one needs to understand the characteristics of pore structures. Characterization of shale gas reservoir microstructure is still a challenge due to ultra-fine grained micro-fabric and micro level heterogeneity of these sedimentary rocks. The sample used in the analysis is a small portion of any reservoir. Thus, each measurement technique has a different result. It raises the question which methods are suitable for characterizing pore shale. The goal of this paper is to summarize some of the microstructure analysis tools of shale rock to get near-real results. The two analyzing pore structure methods are indirect measurement (MIP, He, NMR, LTNA) and direct observation (SEM, TEM, Xray CT). Shale rocks have a high heterogeneity; thus, it needs multiscale quantification techniques to understand their pore structures. To describe the complex pore system of shale, several measurement techniques are needed to characterize the surface area and pore size distribution (LTNA, MIP), shapes, size and distribution of pore (FIB-SEM, TEM, Xray CT), and total porosity (He pycnometer, NMR). The choice of techniques and methods should take into account the purpose of the analysis and also the time and budget.

In-situ, real time micro-CT imaging of pore scale processes, the next frontier for laboratory based micro-CT scanning

OpenAIRE

Boone, Marijn; Bultreys, Tom; Masschaele, Bert; Van Loo, Denis; Van Hoorebeke, Luc; Cnudde, Veerle

2016-01-01

Over the past decade, laboratory based X-ray computed micro-tomography (micro-CT) has given unique insights in the internal structure of complex reservoir rocks, improving the understanding of pore scale processes and providing crucial information for pore scale modelling. Especially in-situ imaging using X-ray optimized Hassler type cells has enabled the direct visualization of fluid distributions at the pore scale under reservoir conditions. While sub-micrometre spatial resolutions are achi...

Soil compaction: Evaluation of stress transmission and resulting soil structure

DEFF Research Database (Denmark)

Naveed, Muhammad; Schjønning, Per; Keller, Thomas

strength. As soon as the applied load is lower than the aggregate strength, the mode of stress transmission is discrete as stresses were mainly transmitted through chain of aggregates. With increasing applied load soil aggregates start deforming that transformed heterogeneous soil into homogenous......, as a result stress transmission mode was shifted from discrete towards more like a continuum. Continuum-like stress transmission mode was better simulated with Boussinesq (1885) model based on theory of elasticity compared to discrete. The soil-pore structure was greatly affected by increasing applied...... and compaction-resulted soil structure at the same time. Stress transmission was quantified using both X-ray CT and Tactilus sensor mat, and soil-pore structure was quantified using X-ray CT. Our results imply that stress transmission through soil highly depends on the magnitude of applied load and aggregate...

Non-invasive localization of organic matter in soil aggregates using SR-μCT

Science.gov (United States)

Peth, Stephan; Mordhorst, Anneka; Chenu, Claire; Uteau Puschmann, Daniel; Garnier, Patricia; Nunan, Naoise; Pot, Valerie; Beckmann, Felix; Ogurreck, Malte

2014-05-01

Knowledge of the location of soil organic matter (SOM) and its spatial association to soil structure is an important step in improving modeling approaches for simulating organic matter turnover processes. Advanced models for carbon mineralization are able to account for the 3D distribution of SOM which is assumed to influence mineralisation. However, their application is still limited by the fact that no method exists to non-invasively determine the 3D spatial distribution of SOM in structured soils. SR-based X-ray microtomography (SR-µCT) is an advanced and promising tool in gaining knowledge on the 3-dimensional organization of soil phases (minerals, organic matter, water, air) which on a voxel level could be implemented into spatially explicit models. However, since the contrast of linear attenuation coefficients of soil organic matter on the one hand and mineral components and water on the other hand are relatively low, especially when materials are finely dispersed, organic matter within the soil pore space is often not resolved in ordinary X-ray absorption contrast imaging. To circumvent this problem we have developed a staining procedure for organic matter using Osmium-tetroxide since Osmium is an element with an absorption edge at a higher X-ray energy level. Osmium is known from transmission electron microscopy analysis (TEM) to stain organic matter specifically and irreversibly while having an absorption edge at approximately 74 keV. We report on the application of a novel Osmium vapor staining method to analyze differences in organic matter content and identify small scale spatial distribution of SOM in soil aggregates. To achieve this we have taken soil aggregate samples (6-8 mm across) obtained from arable soils differing in soil management. Aggregate samples were investigated by synchrotron-based X-ray microtomography (SR-µCT) after staining the sample with Osmium-tetroxide (OsO4) vapor. We utilized the monochromatic X-ray beam to locate osmium

Visualization of soil structure and pore structure modifications by pioneering ground beetles (Cicindelidae) in surface sediments of an artificial catchment

Science.gov (United States)

Badorreck, Annika; Gerke, Horst H.; Weller, Ulrich; Vontobel, Peter

2010-05-01

An artificial catchment was constructed to study initial soil and ecosystem development. As a key process, the pore structure dynamics in the soil at the surface strongly influences erosion, infiltration, matter dynamics, and vegetation establishment. Little is known, however, about the first macropore formation in the very early stage. This presentation focuses on observations of soil pore geometry and its effect on water flow at the surface comparing samples from three sites in the catchment and in an adjacent "younger" site composed of comparable sediments. The surface soil was sampled in cylindrical plastic rings (10 cm³) down to 2 cm depth in three replicates each site and six where caves from pioneering ground-dwelling beetles Cicindelidae were found. The samples were scanned with micro-X-ray computed tomography (at UFZ-Halle, Germany) with a resolution of 0.084 mm. The infiltration dynamics were visualized with neutronradiography (at Paul-Scherer-Institute, Switzerland) on slab-type soil samples in 2D. The micro-tomographies exhibit formation of surface sealing whose thickness and intensity vary with silt and clay content. The CT images show several coarser- and finer-textured micro-layers at the sample surfaces that were formed as a consequence of repeated washing in of finer particles in underlying coarser sediment. In micro-depressions, the uppermost layers consist of sorted fine sand and silt due to wind erosion. Similar as for desert pavements, a vesicular pore structure developed in these sediments on top, but also scattered in fine sand- and silt-enriched micro-layers. The ground-dwelling activity of Cicindelidae beetles greatly modifies the soil structure through forming caves in the first centimetres of the soil. Older collapsed caves, which form isolated pores within mixed zones, were also found. The infiltration rates were severely affected both, by surface crusts and activity of ground-dwelling beetles. The observations demonstrate relatively

Change of Pore-Fracture Structure of Anthracite Modified by Electrochemical Treatment Using Micro-CT

Directory of Open Access Journals (Sweden)

Xianfa Kong

2018-01-01

Full Text Available The electrochemical method can strengthen gas desorption and seepage from coal. The study on change of the pore-fracture structure of coal after electrochemical modification can help to reveal the mechanism. Anthracite was modified by the electrochemical method using our own self-developed experiment apparatus. The pore-fracture structure of modified samples was measured by micro-CT. Combined with the Matlab software, its characteristics such as pore number, porosity, and average pore diameter were analyzed. The results show that (1 the number of fractures in modified coal samples increases. The shape of new fractures in samples in the anodic and cathodic zones was irregular voids and striola, respectively. The effect of electrochemical treatment on the section of samples close to the electrode is relatively obvious. (2 With increasing pore size, the number of pores in samples changes according to negative exponential rules. After electrochemical modification, the porosity of modified samples in the anodic zone increases from 11.88% to 31.65%, and the porosity of modified samples in the cathodic zone increases from 12.13% to 36.71%. (3 The main reason for the increase in the number of pores of coal samples in the anodic and cathodic zones is the treatment of electrolytic dissolution of minerals and electrophoretic migration of charged particles, respectively.

A random-walk model for pore pressure accumulation in marine soils

DEFF Research Database (Denmark)

Sumer, B. Mutlu; Cheng, Niang-Sheng

1999-01-01

A numerical random-walk model has been developed for the pore-water pressure. The model is based on the analogy between the variation of the pore pressure and the diffusion process of any passive quantity such as concentration. The pore pressure in the former process is analogous...... to the concentration in the latter. In the simulation, particles are released in the soil, and followed as they travel through the statistical field variables. The model has been validated (1) against the Terzaghi consolidation process, and (2) against the process where the pore pressure builds up under progressive...... waves. The model will apparently enable the researcher to handle complex geometries (such as a pipeline buried in a soil) relatively easily. Early results with regard to the latter example, namely the buildup of pore pressure around a buried pipeline subject to a progressive wave, are encouraging....

Pore-water pressures associated with clogging of soil pipes: Numerical analysis of laboratory experiments

Science.gov (United States)

Clogging of soil pipes due to excessive internal erosion has been hypothesized to cause extreme erosion events such as landslides, debris flows, and gullies, but confirmation of this phenomenon has been lacking. Laboratory and field measurements have failed to measure pore water pressures within pip...

Shifts in pore connectivity from precipitation versus groundwater rewetting increases soil carbon loss after drought

Energy Technology Data Exchange (ETDEWEB)

Smith, Ashly P.; Bond-Lamberty, Benjamin; Benscoter, Brian W.; Tfaily, Malak M.; Hinkle, Ross; Liu, Chongxuan; Bailey, Vanessa L.

2017-11-06

Droughts and other extreme precipitation events are predicted to increase in intensity, duration and extent, with uncertain implications for terrestrial carbon (C) sequestration. Soil wetting from above (precipitation) results in a characteristically different pattern of pore-filling than wetting from below (groundwater), with larger, well-connected pores filling before finer pore spaces, unlike groundwater rise in which capillary forces saturate the finest pores first. Here we demonstrate that pore-scale wetting patterns interact with antecedent soil moisture conditions to alter pore-, core- and field-scale C dynamics. Drought legacy and wetting direction are perhaps more important determinants of short-term C mineralization than current soil moisture content in these soils. Our results highlight that microbial access to C is not solely limited by physical protection, but also by drought or wetting-induced shifts in hydrologic connectivity. We argue that models should treat soil moisture within a three-dimensional framework emphasizing hydrologic conduits for C and resource diffusion.

Vertical profile measurements of soil air suggest immobilization of gaseous elemental mercury in mineral soil.

Science.gov (United States)

Obrist, Daniel; Pokharel, Ashok K; Moore, Christopher

2014-02-18

Evasion of gaseous elemental Hg (Hg(0)g) from soil surfaces is an important source of atmospheric Hg, but the volatility and solid-gas phase partitioning of Hg(0) within soils is poorly understood. We developed a novel system to continuously measure Hg(0)g concentrations in soil pores at multiple depths and locations, and present a total of 297 days of measurements spanning 14 months in two forests in the Sierra Nevada mountains, California, U.S. Temporal patterns showed consistent pore Hg(0)g concentrations below levels measured in the atmosphere (termed Hg(0)g immobilization), ranging from 66 to 94% below atmospheric concentrations throughout multiple seasons. The lowest pore Hg(0)g concentrations were observed in the deepest soil layers (40 cm), but significant immobilization was already present in the top 7 cm. In the absence of sinks or sources, pore Hg(0)g levels would be in equilibrium with atmospheric concentrations due to the porous nature of the soil matrix and gas diffusion. Therefore, we explain decreases in pore Hg(0)g in mineral soils below atmospheric concentrations--or below levels found in upper soils as observed in previous studies--with the presence of an Hg(0)g sink in mineral soils possibly related to Hg(0)g oxidation or other processes such as sorption or dissolution in soil water. Surface chamber measurements showing daytime Hg(0)g emissions and nighttime Hg(0)g deposition indicate that near-surface layers likely dominate net atmospheric Hg(0)g exchange resulting in typical diurnal cycles due to photochemcial reduction at the surface and possibly Hg(0)g evasion from litter layers. In contrast, mineral soils seem to be decoupled from this surface exchange, showing consistent Hg(0)g uptake and downward redistribution--although our calculations indicate these fluxes to be minor compared to other mass fluxes. A major implication is that once Hg is incorporated into mineral soils, it may be unlikely subjected to renewed Hg(0)g re-emission from

The Effects of Different Tillage Systems on Soil Hydrology and Erosion in Southeastern Brazil

Science.gov (United States)

Bertolino, A. V. F. A.; Fernandes, N. F.; Souza, A. P.; Miranda, J. P.; Rocha, M. L.

2009-04-01

plot. Based on previous studies in this area, suggesting that the plough pan develop at about 20cm depth, the soil water potential (SWP) sensors were installed, in each nest, at 15, 30 and 80 cm depths. Continuously readings in the 30 SWP sensors were made both at a daily and event basis (during some rainfall events) for 25 months. Rainfall was continuously measured in the area by an automatic rain-gauge (tipping bucket) installed close to the plots. In order to characterize changes is soil porosity, both total pore space and pore inter-connections, undisturbed soil blocks were collected for micromorphological analyses (0-10cm, 12-22cm and 25-35cm depths) at small trenches located at the upper parts of each plot. The results attested that soil under CT developed a plough pan layer at about 20 cm depth, showing a 44% decrease in total pore space from 0-10cm to 12-22cm depths, with a predominant network of isolated pores. In the MT plot, soil porosity is more homogeneous with depth, with a predominant network of larger and better connected pores. The results related to soil hydrology show that in many moments, both CT and MT, stay very close to saturation, both at 15 and 30 cm depth. Above the plough pan under CT, soils tend to saturate faster and to have a slower drainage rate than the ones under MT. Detailed SWP analyses made during rain events suggest that CT may favors lateral flows while soils under MT are draining. Soil erosion rates measured for individual events at CT are about four times greater than the ones observed at MT. The results observed in this study attest that conventional tillage (CT) in this area imposed important changes in soil structure, pore-size distribution and connectivity, as well as in soil infiltration, drainage and erosion.

Extraction of pores from microtomographic reconstructions of intact soil aggregates

Energy Technology Data Exchange (ETDEWEB)

Albee, P. B.; Stockman, G. C.; Smucker, A. J. M.

2000-02-29

Segmentation of features is often a necessary step in the analysis of volumetric data. The authors have developed a simple technique for extracting voids from irregular volumetric data sets. In this work they look at extracting pores from soil aggregates. First, they identify a threshold that gives good separability of the object from the background. They then segment the object, and perform connected components analysis on the pores within the object. Using their technique pores that break the surface can be segmented along with pores completely contained in the initially segmented object.

A pore water conductivity sensor

NARCIS (Netherlands)

Hilhorst, M.A.

2001-01-01

The electrical permittivity and conductivity of the bulk soil are a function of the permittivity and conductivity of the pore water. For soil water contents higher than 0.10 both functions are equal, facilitating in situ conductivity measurements of the pore water. A novel method is described, based

Silver Nanoparticle Transport Through Soil: Illuminating the Pore-Scale Processes

Science.gov (United States)

Molnar, I. L.; Willson, C. S.; Gerhard, J.; O'Carroll, D. M.

2015-12-01

For nanoparticle transport through soil, the pore-scale (i.e., tens to hundreds of grains and pores) is a crucial intermediate scale which links nanoparticle-surface interactions with field-scale transport behaviour. However, very little information exists on how nanoparticles behave within real three-dimensional pore spaces. As a result, pore-scale processes are poorly characterized for nanoparticle systems and, subsequently, continuum-scale transport models struggle to describe commonly observed 'anomalous' behaviour such as extended tailing. This knowledge gap is due to two primary factors: an inability to experimentally observe nanoparticles within real pore spaces, and the computationally expensive models required to simulate nanoparticle movement. However, due to recent advances in Synchrotron X-Ray Computed Microtomography (SXCMT), it is now possible to quantify in-situ pore-scale nanoparticle concentrations during transport through real 3-dimensional porous media [1]. Employing this SXCMT quantification method to examine real nanoparticle/soil transport experiments has yielded new insights into the pore-scale processes governing nanoparticle transport. By coupling SXCMT nanoparticle quantification method with Computational Fluid Dynamics (CFD) simulations we are able to construct a better picture of how nanoparticles flow through real pore spaces. This talk presents SXCMT/CFD analyses of three silver nanoparticle transport experiments. Silver nanoparticles were flushed through three different sands to characterize the influence of grain distribution and retention rates on pore-scale flow and transport processes. These CFD/SXCMT analyses illuminate how processes such as temporary hydraulic retention govern nanoparticle transport. In addition, the observed distributions of pore water velocities and nanoparticle mass flow rates challenge the standard conceptual model of nanoparticle transport, suggesting that pore-scale processes require explicit consideration

Relating soil solution Zn concentration to diffusive gradients in thin films measurements in contaminated soils.

Science.gov (United States)

Degryse, Fien; Smolders, Erik; Oliver, Ian; Zhang, Hao

2003-09-01

The technique of diffusive gradients in thin films (DGT) has been suggested to sample an available fraction of metals in soil. The objectives of this study were to compare DGT measurements with commonly measured fractions of Zn in soil, viz, the soil solution concentration and the total Zn concentration. The DGT technique was used to measure fluxes and interfacial concentrations of Zn in three series of field-contaminated soils collected in transects toward galvanized electricity pylons and in 15 soils amended with ZnCl2 at six rates. The ratio of DGT-measured concentration to pore water concentration of Zn, R, varied between 0.02 and 1.52 (mean 0.29). This ratio decreased with decreasing distribution coefficient, Kd, of Zn in the soil, which is in agreement with the predictions of the DGT-induced fluxes in soils (DIFS) model. The R values predicted with the DIFS model were generally larger than the observed values in the ZnCl2-amended soils at the higher Zn rates. A modification of the DIFS model indicated that saturation of the resin gel was approached in these soils, despite the short deployment times used (2 h). The saturation of the resin with Zn did not occur in the control soils (no Zn salt added) or the field-contaminated soils. Pore water concentration of Zn in these soils was predicted from the DGT-measured concentration and the total Zn content. Predicted values and observations were generally in good agreement. The pore water concentration was more than 5 times underpredicted for the most acid soil (pH = 3) and for six other soils, for which the underprediction was attributed to the presence of colloidal Zn in the soil solution.

Properties of Soil Pore Space Regulate Pathways of Plant Residue Decomposition and Community Structure of Associated Bacteria

Science.gov (United States)

Negassa, Wakene C.; Guber, Andrey K.; Kravchenko, Alexandra N.; Marsh, Terence L.; Hildebrandt, Britton; Rivers, Mark L.

2015-01-01

Physical protection of soil carbon (C) is one of the important components of C storage. However, its exact mechanisms are still not sufficiently lucid. The goal of this study was to explore the influence of soil structure, that is, soil pore spatial arrangements, with and without presence of plant residue on (i) decomposition of added plant residue, (ii) CO2 emission from soil, and (iii) structure of soil bacterial communities. The study consisted of several soil incubation experiments with samples of contrasting pore characteristics with/without plant residue, accompanied by X-ray micro-tomographic analyses of soil pores and by microbial community analysis of amplified 16S–18S rRNA genes via pyrosequencing. We observed that in the samples with substantial presence of air-filled well-connected large (>30 µm) pores, 75–80% of the added plant residue was decomposed, cumulative CO2 emission constituted 1,200 µm C g-1 soil, and movement of C from decomposing plant residue into adjacent soil was insignificant. In the samples with greater abundance of water-filled small pores, 60% of the added plant residue was decomposed, cumulative CO2 emission constituted 2,000 µm C g-1 soil, and the movement of residue C into adjacent soil was substantial. In the absence of plant residue the influence of pore characteristics on CO2 emission, that is on decomposition of the native soil organic C, was negligible. The microbial communities on the plant residue in the samples with large pores had more microbial groups known to be cellulose decomposers, that is, Bacteroidetes, Proteobacteria, Actinobacteria, and Firmicutes, while a number of oligotrophic Acidobacteria groups were more abundant on the plant residue from the samples with small pores. This study provides the first experimental evidence that characteristics of soil pores and their air/water flow status determine the phylogenetic composition of the local microbial community and directions and magnitudes of soil C

Properties of soil pore space regulate pathways of plant residue decomposition and community structure of associated bacteria.

Science.gov (United States)

Negassa, Wakene C; Guber, Andrey K; Kravchenko, Alexandra N; Marsh, Terence L; Hildebrandt, Britton; Rivers, Mark L

2015-01-01

Physical protection of soil carbon (C) is one of the important components of C storage. However, its exact mechanisms are still not sufficiently lucid. The goal of this study was to explore the influence of soil structure, that is, soil pore spatial arrangements, with and without presence of plant residue on (i) decomposition of added plant residue, (ii) CO2 emission from soil, and (iii) structure of soil bacterial communities. The study consisted of several soil incubation experiments with samples of contrasting pore characteristics with/without plant residue, accompanied by X-ray micro-tomographic analyses of soil pores and by microbial community analysis of amplified 16S-18S rRNA genes via pyrosequencing. We observed that in the samples with substantial presence of air-filled well-connected large (>30 µm) pores, 75-80% of the added plant residue was decomposed, cumulative CO2 emission constituted 1,200 µm C g(-1) soil, and movement of C from decomposing plant residue into adjacent soil was insignificant. In the samples with greater abundance of water-filled small pores, 60% of the added plant residue was decomposed, cumulative CO2 emission constituted 2,000 µm C g(-1) soil, and the movement of residue C into adjacent soil was substantial. In the absence of plant residue the influence of pore characteristics on CO2 emission, that is on decomposition of the native soil organic C, was negligible. The microbial communities on the plant residue in the samples with large pores had more microbial groups known to be cellulose decomposers, that is, Bacteroidetes, Proteobacteria, Actinobacteria, and Firmicutes, while a number of oligotrophic Acidobacteria groups were more abundant on the plant residue from the samples with small pores. This study provides the first experimental evidence that characteristics of soil pores and their air/water flow status determine the phylogenetic composition of the local microbial community and directions and magnitudes of soil C

Micro-CT Pore Scale Study Of Flow In Porous Media: Effect Of Voxel Resolution

Science.gov (United States)

Shah, S.; Gray, F.; Crawshaw, J.; Boek, E.

2014-12-01

In the last few years, pore scale studies have become the key to understanding the complex fluid flow processes in the fields of groundwater remediation, hydrocarbon recovery and environmental issues related to carbon storage and capture. A pore scale study is often comprised of two key procedures: 3D pore scale imaging and numerical modelling techniques. The essence of a pore scale study is to test the physics implemented in a model of complicated fluid flow processes at one scale (microscopic) and then apply the model to solve the problems associated with water resources and oil recovery at other scales (macroscopic and field). However, the process of up-scaling from the pore scale to the macroscopic scale has encountered many challenges due to both pore scale imaging and modelling techniques. Due to the technical limitations in the imaging method, there is always a compromise between the spatial (voxel) resolution and the physical volume of the sample (field of view, FOV) to be scanned by the imaging methods, specifically X-ray micro-CT (XMT) in our case In this study, a careful analysis was done to understand the effect of voxel size, using XMT to image the 3D pore space of a variety of porous media from sandstones to carbonates scanned at different voxel resolution (4.5 μm, 6.2 μm, 8.3 μm and 10.2 μm) but keeping the scanned FOV constant for all the samples. We systematically segment the micro-CT images into three phases, the macro-pore phase, an intermediate phase (unresolved micro-pores + grains) and the grain phase and then study the effect of voxel size on the structure of the macro-pore and the intermediate phases and the fluid flow properties using lattice-Boltzmann (LB) and pore network (PN) modelling methods. We have also applied a numerical coarsening algorithm (up-scale method) to reduce the computational power and time required to accurately predict the flow properties using the LB and PN method.

Micro-CT scan reveals an unexpected high-volume and interconnected pore network in a Cretaceous Sanagasta dinosaur eggshell.

Science.gov (United States)

Hechenleitner, E Martín; Grellet-Tinner, Gerald; Foley, Matthew; Fiorelli, Lucas E; Thompson, Michael B

2016-03-01

The Cretaceous Sanagasta neosauropod nesting site (La Rioja, Argentina) was the first confirmed instance of extinct dinosaurs using geothermal-generated heat to incubate their eggs. The nesting strategy and hydrothermal activities at this site led to the conclusion that the surprisingly 7 mm thick-shelled eggs were adapted to harsh hydrothermal microenvironments. We used micro-CT scans in this study to obtain the first three-dimensional microcharacterization of these eggshells. Micro-CT-based analyses provide a robust assessment of gas conductance in fossil dinosaur eggshells with complex pore canal systems, allowing calculation, for the first time, of the shell conductance through its thickness. This novel approach suggests that the shell conductance could have risen during incubation to seven times more than previously estimated as the eggshell erodes. In addition, micro-CT observations reveal that the constant widening and branching of pore canals form a complex funnel-like pore canal system. Furthermore, the high density of pore canals and the presence of a lateral canal network in the shell reduce the risks of pore obstruction during the extended incubation of these eggs in a relatively highly humid and muddy nesting environment. © 2016 The Author(s).

Percolation properties of 3-D multiscale pore networks: how connectivity controls soil filtration processes

Science.gov (United States)

Perrier, E. M. A.; Bird, N. R. A.; Rieutord, T. B.

2010-10-01

Quantifying the connectivity of pore networks is a key issue not only for modelling fluid flow and solute transport in porous media but also for assessing the ability of soil ecosystems to filter bacteria, viruses and any type of living microorganisms as well inert particles which pose a contamination risk. Straining is the main mechanical component of filtration processes: it is due to size effects, when a given soil retains a conveyed entity larger than the pores through which it is attempting to pass. We postulate that the range of sizes of entities which can be trapped inside soils has to be associated with the large range of scales involved in natural soil structures and that information on the pore size distribution has to be complemented by information on a critical filtration size (CFS) delimiting the transition between percolating and non percolating regimes in multiscale pore networks. We show that the mass fractal dimensions which are classically used in soil science to quantify scaling laws in observed pore size distributions can also be used to build 3-D multiscale models of pore networks exhibiting such a critical transition. We extend to the 3-D case a new theoretical approach recently developed to address the connectivity of 2-D fractal networks (Bird and Perrier, 2009). Theoretical arguments based on renormalisation functions provide insight into multi-scale connectivity and a first estimation of CFS. Numerical experiments on 3-D prefractal media confirm the qualitative theory. These results open the way towards a new methodology to estimate soil filtration efficiency from the construction of soil structural models to be calibrated on available multiscale data.

Percolation properties of 3-D multiscale pore networks: how connectivity controls soil filtration processes

Directory of Open Access Journals (Sweden)

E. M. A. Perrier

2010-10-01

Full Text Available Quantifying the connectivity of pore networks is a key issue not only for modelling fluid flow and solute transport in porous media but also for assessing the ability of soil ecosystems to filter bacteria, viruses and any type of living microorganisms as well inert particles which pose a contamination risk. Straining is the main mechanical component of filtration processes: it is due to size effects, when a given soil retains a conveyed entity larger than the pores through which it is attempting to pass. We postulate that the range of sizes of entities which can be trapped inside soils has to be associated with the large range of scales involved in natural soil structures and that information on the pore size distribution has to be complemented by information on a critical filtration size (CFS delimiting the transition between percolating and non percolating regimes in multiscale pore networks. We show that the mass fractal dimensions which are classically used in soil science to quantify scaling laws in observed pore size distributions can also be used to build 3-D multiscale models of pore networks exhibiting such a critical transition. We extend to the 3-D case a new theoretical approach recently developed to address the connectivity of 2-D fractal networks (Bird and Perrier, 2009. Theoretical arguments based on renormalisation functions provide insight into multi-scale connectivity and a first estimation of CFS. Numerical experiments on 3-D prefractal media confirm the qualitative theory. These results open the way towards a new methodology to estimate soil filtration efficiency from the construction of soil structural models to be calibrated on available multiscale data.

Mobility of arsenic, cadmium and zinc in a multi-element contaminated soil profile assessed by in-situ soil pore water sampling, column leaching and sequential extraction

International Nuclear Information System (INIS)

Beesley, Luke; Moreno-Jimenez, Eduardo; Clemente, Rafael; Lepp, Nicholas; Dickinson, Nicholas

2010-01-01

Three methods for predicting element mobility in soils have been applied to an iron-rich soil, contaminated with arsenic, cadmium and zinc. Soils were collected from 0 to 30 cm, 30 to 70 cm and 70 to 100 cm depths in the field and soil pore water was collected at different depths from an adjacent 100 cm deep trench. Sequential extraction and a column leaching test in the laboratory were compared to element concentrations in pore water sampled directly from the field. Arsenic showed low extractability, low leachability and occurred at low concentrations in pore water samples. Cadmium and zinc were more labile and present in higher concentrations in pore water, increasing with soil depth. Pore water sampling gave the best indication of short term element mobility when field conditions were taken into account, but further extraction and leaching procedures produced a fuller picture of element dynamics, revealing highly labile Cd deep in the soil profile. - Mobility of arsenic, cadmium and zinc in a polluted soil can be realistically interpreted by in-situ soil pore water sampling.

Influence of hydrological regime on pore water metal concentrations in a contaminated sediment-derived soil

International Nuclear Information System (INIS)

Du Laing, G.; Vanthuyne, D.R.J.; Vandecasteele, B.; Tack, F.M.G.; Verloo, M.G.

2007-01-01

Options for wetland creation or restoration might be limited because of the presence of contaminants in the soil. The influence of hydrological management on the pore water concentrations of Cd, Cr, Cu, Fe, Mn, Ni and Zn in the upper soil layer of a contaminated overbank sedimentation zone was investigated in a greenhouse experiment. Flooding conditions led to increased Fe, Mn, Ni and Cr concentrations and decreased Cd, Cu and Zn concentrations in the pore water of the upper soil layer. Keeping the soil at field capacity resulted in a low pore water concentration of Fe, Mn and Ni while the Cd, Cu, Cr and Zn concentrations increased. Alternating hydrological conditions caused metal concentrations in the pore water to fluctuate. Formation and re-oxidation of small amounts of sulphides appeared dominant in determining the mobility of Cd, Cu, and to a lesser extent Zn, while Ni behaviour was consistent with Fe/Mn oxidation and reduction. These effects were strongly dependent on the duration of the flooded periods. The shorter the flooded periods, the better the metal concentrations could be linked to the mobility of Ca in the pore water, which is attributed to a fluctuating CO 2 pressure. - The hydrological regime is a key factor in determining the metal concentration in the pore water of a contaminated sediment-derived soil

Nitrogen-mediated effects of elevated CO2 on intra-aggregate soil pore structure.

Science.gov (United States)

Caplan, Joshua S; Giménez, Daniel; Subroy, Vandana; Heck, Richard J; Prior, Stephen A; Runion, G Brett; Torbert, H Allen

2017-04-01

Soil pore structure has a strong influence on water retention, and is itself influenced by plant and microbial dynamics such as root proliferation and microbial exudation. Although increased nitrogen (N) availability and elevated atmospheric CO 2 concentrations (eCO 2 ) often have interacting effects on root and microbial dynamics, it is unclear whether these biotic effects can translate into altered soil pore structure and water retention. This study was based on a long-term experiment (7 yr at the time of sampling) in which a C 4 pasture grass (Paspalum notatum) was grown on a sandy loam soil while provided factorial additions of N and CO 2 . Through an analysis of soil aggregate fractal properties supported by 3D microtomographic imagery, we found that N fertilization induced an increase in intra-aggregate porosity and a simultaneous shift toward greater accumulation of pore space in larger aggregates. These effects were enhanced by eCO 2 and yielded an increase in water retention at pressure potentials near the wilting point of plants. However, eCO 2 alone induced changes in the opposite direction, with larger aggregates containing less pore space than under control conditions, and water retention decreasing accordingly. Results on biotic factors further suggested that organic matter gains or losses induced the observed structural changes. Based on our results, we postulate that the pore structure of many mineral soils could undergo N-dependent changes as atmospheric CO 2 concentrations rise, having global-scale implications for water balance, carbon storage, and related rhizosphere functions. © 2016 John Wiley & Sons Ltd.

Tillage System and Cover Crop Effects on Soil Quality

DEFF Research Database (Denmark)

Abdollahi, Lotfollah; Munkholm, Lars Juhl

2014-01-01

Information about the quantitative effect of conservation tillage combined with a cover crop on soil structure is still limited. This study examined the effect of these management practices on soil pore characteristics of a sandy loam soil in a long-term field trial. The tillage treatments (main...... plots) included direct drilling (D), harrowing to a depth of 8 to 10 cm (H), and moldboard plowing (MP). The cover crop treatments were subplot with cover crop (+CC) and without cover crop (−CC). Minimally disturbed soil cores were taken from the 4- to 8-, 12- to 16-, and 18- to 27-cm depth intervals...... in the spring of 2012 before cultivation. Soil water retention and air permeability were measured for matric potentials ranging from −1 to −30 kPa. Gas diffusivity was measured at −10 kPa. Computed tomography (CT) scanning was also used to characterize soil pore characteristics. At the 4- to 8- and 18- to 27-cm...

The Destabilization of Protected Soil Organic Carbon Following Experimental Drought at the Pore and Core scale

Science.gov (United States)

Smith, A. P.; Bond-Lamberty, B. P.; Tfaily, M. M.; Todd-Brown, K. E.; Bailey, V. L.

2015-12-01

The movement of water and solutes through the pore matrix controls the distribution and transformation of carbon (C) in soils. Thus, a change in the hydrologic connectivity, such as increased saturation, disturbance or drought, may alter C mineralization and greenhouse gas (GHG) fluxes to the atmosphere. While these processes occur at the pore scale, they are often investigated at coarser scale. This project investigates pore- and core-scale soil C dynamics with varying hydrologic factors (simulated precipitation, groundwater-led saturation, and drought) to assess how climate-change induced shifts in hydrologic connectivity influences the destabilization of protected C in soils. Surface soil cores (0-15 cm depth) were collected from the Disney Wilderness Preserve, Florida, USA where water dynamics, particularly water table rise and fall, appear to exert a strong control on the emissions of GHGs and the persistence of soil organic matter in these soils. We measured CO2 and CH4 from soils allowed to freely imbibe water from below to a steady state starting from either field moist conditions or following experimental drought. Parallel treatments included the addition of similar quantities of water from above to simulate precipitation. Overall respiration increased in soil cores subjected to drought compared to field moist cores independent of wetting type. Cumulative CH4 production was higher in drought-induced soils, especially in the soils subjected to experimental groundwater-led saturation. Overall, the more C (from CO2 and CH4) was lost in drought-induced soils compared to field moist cores. Our results indicate that future drought events could have profound effects on the destabilization of protected C, especially in groundwater-fed soils. Our next steps focus on how to accurately capture drought-induced C destabilization mechanisms in earth system models.

Root hairs aid soil penetration by anchoring the root surface to pore walls.

Science.gov (United States)

Bengough, A Glyn; Loades, Kenneth; McKenzie, Blair M

2016-02-01

The physical role of root hairs in anchoring the root tip during soil penetration was examined. Experiments using a hairless maize mutant (Zea mays: rth3-3) and its wild-type counterpart measured the anchorage force between the primary root of maize and the soil to determine whether root hairs enabled seedling roots in artificial biopores to penetrate sandy loam soil (dry bulk density 1.0-1.5g cm(-3)). Time-lapse imaging was used to analyse root and seedling displacements in soil adjacent to a transparent Perspex interface. Peak anchorage forces were up to five times greater (2.5N cf. 0.5N) for wild-type roots than for hairless mutants in 1.2g cm(-3) soil. Root hair anchorage enabled better soil penetration for 1.0 or 1.2g cm(-3) soil, but there was no significant advantage of root hairs in the densest soil (1.5g cm(-3)). The anchorage force was insufficient to allow root penetration of the denser soil, probably because of less root hair penetration into pore walls and, consequently, poorer adhesion between the root hairs and the pore walls. Hairless seedlings took 33h to anchor themselves compared with 16h for wild-type roots in 1.2g cm(-3) soil. Caryopses were often pushed several millimetres out of the soil before the roots became anchored and hairless roots often never became anchored securely.The physical role of root hairs in anchoring the root tip may be important in loose seed beds above more compact soil layers and may also assist root tips to emerge from biopores and penetrate the bulk soil. © The Author 2016. Published by Oxford University Press on behalf of the Society for Experimental Biology.

Seasonal Effects on the Relationships Between Soil Water Content, Pore Water Pressure and Shear Strength and Their Implications for Slope Stability

Science.gov (United States)

Hughes, P. N.

2015-12-01

A soil's shear resistance is mainly dependent upon the magnitude of effective stress. For small to medium height slopes (up to 10m) in clay soils the total stress acting along potential failure planes will be low, therefore the magnitude of effective stress (and hence soil shear strength) will be dominated by the pore-water pressure. The stability of slopes on this scale through periods of increased precipitation is improved by the generation of negative pore pressures (soil suctions) during preceding, warmer, drier periods. These negative pore water pressures increase the effective stress within the soil and cause a corresponding increase in shearing resistance. The relationships between soil water content and pore water pressure (soil water retention curves) are known to be hysteretic, but for the purposes of the majority of slope stability assessments in partially saturated clay soils, these are assumed to be consistent with time. Similarly, the relationship between shear strength and water content is assumed to be consistent over time. This research presents a laboratory study in which specimens of compacted Glacial Till (typical of engineered slopes within the UK) were subjected to repeated cycles of wetting and drying to simulate seasonal cycles. At predetermined water contents, measurements of soil suction were made using tensiometer and dewpoint potentiometer methods. The undrained shear strength of the specimens was then measured using triaxial strength testing equipment. Results indicate that repeated wetting and drying cycles caused a change in the soil water retention behaviour. A reduction in undrained shear strength at corresponding water contents along the wetting and drying paths was also observed. The mechanism for the change in the relationship is believed to be a deterioration in the soil physical structure due to shrink/swell induced micro-cracking. The non-stationarity of these relationships has implications for slope stability assessment.

Antera 3D capabilities for pore measurements.

Science.gov (United States)

Messaraa, C; Metois, A; Walsh, M; Flynn, J; Doyle, L; Robertson, N; Mansfield, A; O'Connor, C; Mavon, A

2018-04-29

The cause of enlarged pores remains obscure but still remains of concern for women. To complement subjective methods, bioengineered methods are needed for quantification of pores visibility following treatments. The study objective was to demonstrate the suitability of pore measurements from the Antera 3D. Pore measurements were collected on 22 female volunteers aged 18-65 years with the Antera 3D, the DermaTOP and image analysis on photographs. Additionally, 4 raters graded pore size on photographs on a scale 0-5. Repeatability of Antera 3D parameters was ascertained and the benefit of a pore minimizer product on the cheek was assessed on a sub panel of seven female volunteers. Pore parameters using the Antera were shown to depict pore severity similar to raters on photographs, except for Max Depth. Mean pore volume, mean pore area and count were moderately correlated with DermaTOP parameters (up to r = .50). No relationship was seen between the Antera 3D and pore visibility analysis on photographs. The most repeatable parameters were found to be mean pore volume, mean pore area and max depth, especially for the small and medium filters. The benefits of a pore minimizer product were the most striking for mean pore volume and mean pore area when using the small filter for analysis, rather than the medium/large ones. Pore measurements with the Antera 3D represent a reliable tool for efficacy and field studies, with an emphasis of the small filter for analysis for the mean pore volume/mean pore area parameters. © 2018 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.

3D quantification of soil structure and functioning based on PET and CT scanning techniques

DEFF Research Database (Denmark)

Garbout, Amin

This thesis explores the potential of PET and CT scanning techniques to quantify and visualize soil structure, root development, and soil/plant interactions. At the investigated scale, these non-invasive and nondestructive techniques have some obvious advantages compared with most other techniques....... The processed measurements show some expected and a few unexpected effects (or lack of effects) on different characteristics of soil structure. The combination of CT and PET scanning in an air plant soil controller system revealed some very interesting research possibilities. Interactions between soil structure...

Linking Intra-Aggregate Pore Size Distribution with Organic Matter Decomposition Status, Evidence from FTIR and X-Ray Tomography

Science.gov (United States)

Toosi, E. R.; Quigley, M.; Kravchenko, A. N.

2014-12-01

It has been reported that conversion of intensively cultivated lands to less disturbed systems enhances soil OM storage capacity, primarily through OM stabilization in macroaggregates. We hypothesized that the potential for OM stabilization inside macro-aggregates is influenced by presence and abundance of intra-aggregate pores. Pores determine microbial access to OM and regulate diffusion of solution/gases within aggregates which drives microbial functioning. We investigated the influence of longterm disturbance intensity on soil OM composition and its relation to pore size distribution within macroaggregates. We used quantitative FTIR to determine OM decomposition status and X-ray micro-tomography to assess pore size distribution in macroaggregates as affected by management and landuse. Macroaggregates 4-6 mm in size where selected from topsoil under long term conventional tillage (CT), cover-crop (CC), and native succession vegetation (NS) treatments at Kellogg Biological Station, Michigan. Comparison of main soil OM functional groups suggested that with increasing disturbance intensity, the proportion of aromatic and carboxylic/carbohydrates associated compounds increased and it was concomitant with a decrease in the proportion of aliphatic associated compounds and lignin derivatives. Further, FTIR-based decomposition indices revealed that overall decomposition status of macroaggregates followed the pattern of CT > CC ≈ NS. X-ray micro-tomography findings suggested that greater OM decomposition within the macroaggregates was associated with i) greater percent of pores >13 micron in size within the aggregates, as well as ii) greater proportion of small to medium pores (13-110 micron). The results develop previous findings, suggesting that shift in landuse or management indirectly affects soil OM stabilization through alteration of pore size distribution within macroaggregates that itself, is coupled with OM decomposition status.

Influence of Soil Management on Water Retention from Saturation to Oven Dryness and Dominant Soil Water States in a Vertisol under Crop Rotation

Science.gov (United States)

Vanderlinden, Karl; Pachepsky, Yakov; Pederera, Aura; Martinez, Gonzalo; Espejo, Antonio Jesus; Giraldez, Juan Vicente

2014-05-01

Unique water transfer and retention properties of Vertisols strongly affect their use in rainfed agriculture in water-limited environments. Despite the agricultural importance of the hydraulic properties of those soils, water retention data dryer than the wilting point are generally scarce, mainly as a result of practical constraints of traditional water retention measurement methods. In this work we provide a detailed description of regionalized water retention data from saturation to oven dryness, obtained from 54 minimally disturbed topsoil (0-0.05m) samples collected at a 3.5-ha experimental field in SW Spain where conventional tillage (CT) and direct drilling (DD) is compared in a wheat-sunflower-legume crop rotation on a Vertisol. Water retention was measured from saturation to oven dryness using sand and sand-kaolin boxes, a pressure plate apparatus and a dew point psychrometer, respectively. A common shape of the water retention curve (WRC) was observed in both tillage systems, with a strong discontinuity in its slope near -0.4 MPa and a decreasing spread from the wet to the dry end. A continuous function, consisting of the sum of a double exponential model (Dexter et al, 2008) and the Groenevelt and Grant (2004) model could be fitted successfully to the data. Two inflection points in the WRC were interpreted as boundaries between the structural and the textural pore spaces and between the textural and the intra-clay aggregate pore spaces. Water retention was significantly higher in DD (ptillage and compaction, increasing and decreasing the amount of the largest pores in CT and DD, respectively, but resulting in a proportionally larger pore space with relevant pore-sizes for water dynamics and agronomic performance. Significant differences in water retention and equivalent pore-sizes at the dry end of the WRC could be associated with the higher organic matter content found in DD. These results explain the superior performance of DD over CT in satisfying

Arbuscular mycorrhizal fungi make a complex contribution to soil aggregation

Science.gov (United States)

McGee, Peter; Daynes, Cathal; Damien, Field

2013-04-01

Soil aggregates contain solid and fluid components. Aggregates develop as a consequence of the organic materials, plants and hyphae of arbuscular mycorrhizal (AM) fungi acting on the solid phase. Various correlative studies indicate hyphae of AM fungi enmesh soil particles, but their impact on the pore space is poorly understood. Hyphae may penetrate between particles, remove water from interstitial spaces, and otherwise re-arrange the solid phase. Thus we might predict that AM fungi also change the pore architecture of aggregates. Direct observations of pore architecture of soil, such as by computer-aided tomography (CT), is difficult. The refractive natures of solid and biological material are similar. The plant-available water in various treatments allows us to infer changes in pore architecture. Our experimental studies indicate AM fungi have a complex role in the formation and development of aggregates. Soils formed from compost and coarse subsoil materials were planted with mycorrhizal or non-mycorrhizal seedlings and the resultant soils compared after 6 or 14 months in separate experiments. As well as enmeshing particles, AM fungi were associated with the development of a complex pore space and greater pore volume. Even though AM fungi add organic matter to soil, the modification of pore space is not correlated with organic carbon. In a separate study, we visualised hyphae of AM fungi in a coarse material using CT. In this study, hyphae appeared to grow close to the surfaces of particles with limited ramification across the pore spaces. Hyphae of AM fungi appear to utilise soil moisture for their growth and development of mycelium. The strong correlation between moisture and hyphae has profound implications for soil aggregation, plant utilisation of soil water, and the distribution of water as water availability declines.

Slow reaction of soil structure to conservation agriculture practices in Veneto silty soils (North-Easter Italy)

Science.gov (United States)

Piccoli, Ilaria; Camarotto, Carlo; Lazzaro, Barbara; Furlan, Lorenzo; Morari, Francesco

2017-04-01

Soil structure plays a pivotal role in soil functioning and can inform of the degradation of the soil ecosystem. Intensive and repeated tillage operations have been known to negatively affect the soil structure characteristics while conservation agriculture (CA) practices were demonstrated to improve soil structure and related ecosystem services. The aim of this study is to evaluate the effect of conservation agriculture practices on total porosity, pore size distribution, pore architecture and morphology on silty soils of Veneto low-lying plain (North-Eastern Italy). Experimental design was established in 2010 on 4 farms in North-Eastern Italy to compare conventional intensive tillage system "IT" versus conservation agriculture "CA" (no-tillage, cover-crop and residue retention). 96 samples were collected in 2015 at four depths down to 50 cm depth, and investigated for porosity from micro to macro by coupling mercury intrusion porosimetry (MIP) (0.0074-100 µm) and x-ray computed microtomography (µCT) (>26 µm). Pore morphology and architecture were studied from 3D images analysis and MIP pore size curve. Ultramicroporosity class (0.1-5 μm) positively responded to CA after 5-yr of practices adoption while no significant effects were observed in the x-ray µCT domain (> 26 µm). Silty soils of Veneto plain showed a slow reaction to conservation agriculture because of the low soil organic carbon content and poor aggregate stability. Nevertheless the positive influence of CA on ultramicroporosity, which is strictly linked to soil organic carbon (SOC) stabilization, indicated that a virtuous cycle was initiated between SOC and porosity, hopefully leading to well-developed macropore systems and, in turn, enhanced soil functions and ecosystem services.

Quantitative Study of Porosity and Pore Features in Moldavites by Means of X-ray Micro-CT

Directory of Open Access Journals (Sweden)

Giovanni Pratesi

2014-04-01

Full Text Available X-ray micro-computer aided tomography (μ-CT, together with optical microscopy and imaging, have been applied to the study of six moldavite samples. These techniques enabled a complete characterization to be made of the textural features of both Muong Nong-type and common splashform moldavites. A detailed study of the size and distribution of pores or bubbles confirmed the marked variability in pore size among the samples, as well as within each sample, and indicated in the Muong Nong-type moldavites the presence of at least two deformation stages which occurred before and after pore formation.

Effects of the stress field induced by a running tyre on the soil pore system

DEFF Research Database (Denmark)

Berisso, Feto Esimo; Schjønning, Per; Lamandé, Mathieu

2013-01-01

state in the soil profile beneath the harvester tyre was calculated using the SoilFlex model. Pore continuity index (N) and blocked air-filled porosity (εb) were estimated from the relationship between ka and air-filled porosity (εa) for a range of matric potentials. Calculated and measured stresses...... repeated wheelings were performed by a forage harvester (wheel load 6100 kg; tyre width 80 cm). Mean normal and horizontal stresses were measured with Bolling probes (at 10, 20 and 40 cm depth) and load cells (at 40, 50, 60 cm lateral distance from the centreline of the wheel rut at 10, 30 and 50 cm depth......), respectively. Intact soil cores of 100 cm3 sampled at 10, 30 and 50 cm depth in a soil transcet running from the centreline of the wheel rut to the unwheeled part of the field were used for measurements of water retention and air permeability (ka) at −30, −100 and −300 hPa matric potential. The complete stress...

Thermal separation of soil particles from thermal conductivity measurement under various air pressures.

Science.gov (United States)

Lu, Sen; Ren, Tusheng; Lu, Yili; Meng, Ping; Zhang, Jinsong

2017-01-05

The thermal conductivity of dry soils is related closely to air pressure and the contact areas between solid particles. In this study, the thermal conductivity of two-phase soil systems was determined under reduced and increased air pressures. The thermal separation of soil particles, i.e., the characteristic dimension of the pore space (d), was then estimated based on the relationship between soil thermal conductivity and air pressure. Results showed that under both reduced and increased air pressures, d estimations were significantly larger than the geometrical mean separation of solid particles (D), which suggested that conductive heat transfer through solid particles dominated heat transfer in dry soils. The increased air pressure approach gave d values lower than that of the reduced air pressure method. With increasing air pressure, more collisions between gas molecules and solid surface occurred in micro-pores and intra-aggregate pores due to the reduction of mean free path of air molecules. Compared to the reduced air pressure approach, the increased air pressure approach expressed more micro-pore structure attributes in heat transfer. We concluded that measuring thermal conductivity under increased air pressure procedures gave better-quality d values, and improved soil micro-pore structure estimation.

Impact of long-term fertilization practice on soil structure evolution

DEFF Research Database (Denmark)

Naveed, Muhammad; Møldrup, Per; Vogel, Hans-Jörg

2014-01-01

higher macroporosity and biological (earthworm) activity in the well fertilized areas when compared to plots without or only a small amount of fertilizer applied. A combined evaluation of the soil water characteristic, gas transport and X-ray CT results suggested that pore size distributions widened......The study characterized soil structure development and evolution in six plots that were amended with varying amounts of animalmanure (AM) and NPK fertilizer over a period of 106 years in a long-termfertilization experiment in Bad Lauchstädt, Germany. Two intact soil cores (10-cm diameter and 8-cm...... tall) and bulk soil samples were extracted froma depth between 5 and 15-cmfromeach plot. Soil properties including texture, organic carbon, soil–water characteristic, air permeability and diffusivity were measured and analyzed along with X-ray computed tomography (CT) data. Long...

Effects of plough pan development on surface hydrology and on soil physical properties in Southeastern Brazilian plateau

Science.gov (United States)

Bertolino, Ana V. F. A.; Fernandes, Nelson F.; Miranda, João P. L.; Souza, Andréa P.; Lopes, Marcel R. S.; Palmieri, Francesco

2010-10-01

SummaryConventional tillage may impose changes in soil physical properties that lead to a decrease in soil physical quality. Although plough pan formation is considered to be an important consequence of conventional tillage practices in Southeastern Brazil, few studies have focused on its hydrological consequences. Detailed investigations in two experimental plots located in the hilly landscape of Serra do Mar close to Rio de Janeiro city were carried out to characterize the changes in soil physical properties and in soil hydrology due to plough pan formation. Conventional (CT) and minimum tillage (MT) practices were implemented in two plots for 3 years and soil matric potential (SMP) was monitored in each plot via nests of tensiometers and Watermark® sensors installed at different depths. Undisturbed soil blocks were collected for micromorphological analyses to quantify the total pore space in soils under CT and MT systems, and in soils under natural tropical forest. Results suggest that soils under the CT system developed a plough pan layer at about 20 cm depth that had 44% less total porosity as compared to surface conditions. It is shown that soils under the CT system tended to stay saturated for longer periods of time after each rainfall event. Besides, during intense rainy periods soils under the CT system may develop hydrologic conditions that favor lateral flows while soils under the MT system were still draining. Such hydrological responses may explain why average soil erosion rates measured for individual rainfall events under the CT system were about 2.5 times greater than the ones observed at MT. The results attested that conventional tillage in this area generated modifications in soil fabric, especially in pore-size distribution and connectivity, which induced important changes in soil hydrology and soil erosion. The agricultural practices used in this area, associated with the local steep hillslopes and intense rainfall events, are definitely not

Pore water sampling in acid sulfate soils: a new peeper method.

Science.gov (United States)

Johnston, Scott G; Burton, Edward D; Keene, Annabelle F; Bush, Richard T; Sullivan, Leigh A; Isaacson, Lloyd

2009-01-01

This study describes the design, deployment, and application of a modified equilibration dialysis device (peeper) optimized for sampling pore waters in acid sulfate soils (ASS). The modified design overcomes the limitations of traditional-style peepers, when sampling firm ASS materials over relatively large depth intervals. The new peeper device uses removable, individual cells of 25 mL volume housed in a 1.5 m long rigid, high-density polyethylene rod. The rigid housing structure allows the device to be inserted directly into relatively firm soils without requiring a supporting frame. The use of removable cells eliminates the need for a large glove-box after peeper retrieval, thus simplifying physical handling. Removable cells are easily maintained in an inert atmosphere during sample processing and the 25-mL sample volume is sufficient for undertaking multiple analyses. A field evaluation of equilibration times indicates that 32 to 38 d of deployment was necessary. Overall, the modified method is simple and effective and well suited to acquisition and processing of redox-sensitive pore water profiles>1 m deep in acid sulfate soil or any other firm wetland soils.

Evaluation of 1H NMR relaxometry for the assessment of pore size distribution in soil samples

NARCIS (Netherlands)

Jaeger, F.; Bowe, S.; As, van H.; Schaumann, G.E.

2009-01-01

1H NMR relaxometry is used in earth science as a non-destructive and time-saving method to determine pore size distributions (PSD) in porous media with pore sizes ranging from nm to mm. This is a broader range than generally reported for results from X-ray computed tomography (X-ray CT) scanning,

Soil architecture relationships with dynamic soil physical processes: a conceptual study using natural, artificial, and 3D-printed soil cores

DEFF Research Database (Denmark)

Lamandé, Mathieu; Schjønning, Per; Dal Ferro, Nicola

Pore system architecture is a key feature for understanding physical, biological and chemical processes in soils. Development of visualisation technics, especially x-ray CT, during recent years has been useful in describing the complex relationships between soil architecture and soil functions. We...... believe that combining visualization with physical models is a step further towards a better understanding of these relationships. We conducted a concept study using natural, artificial and 3D-printed soil cores. Eight natural soil cores (100 cm3) were sampled in a cultivated stagnic Luvisol at two depths...... (topsoil and subsoil), representing contrasting soil pore systems. Cylinders (100 cm3) were produced from plastic or from autoclaved aerated concrete. Holes of diameters 1.5 and 3 mm were drilled in the cylinder direction for the plastic cylinder and for one of the AAC cylinders. All natural and artificial...

Comparison between traditional laboratory tests, permeability measurements and CT-based fluid flow modelling for cultural heritage applications

Energy Technology Data Exchange (ETDEWEB)

De Boever, Wesley, E-mail: Wesley.deboever@ugent.be [UGCT/PProGRess, Dept. of Geology, Ghent University, Krijgslaan 281, 9000 Ghent (Belgium); Bultreys, Tom; Derluyn, Hannelore [UGCT/PProGRess, Dept. of Geology, Ghent University, Krijgslaan 281, 9000 Ghent (Belgium); Van Hoorebeke, Luc [UGCT/Radiation Physics, Dept. of Physics & Astronomy, Ghent University, Proeftuinstraat 86, 9000 Ghent (Belgium); Cnudde, Veerle [UGCT/PProGRess, Dept. of Geology, Ghent University, Krijgslaan 281, 9000 Ghent (Belgium)

2016-06-01

In this paper, we examine the possibility to use on-site permeability measurements for cultural heritage applications as an alternative for traditional laboratory tests such as determination of the capillary absorption coefficient. These on-site measurements, performed with a portable air permeameter, were correlated with the pore network properties of eight sandstones and one granular limestone that are discussed in this paper. The network properties of the 9 materials tested in this study were obtained from micro-computed tomography (μCT) and compared to measurements and calculations of permeability and the capillary absorption rate of the stones under investigation, in order to find the correlation between pore network characteristics and fluid management characteristics of these sandstones. Results show a good correlation between capillary absorption, permeability and network properties, opening the possibility of using on-site permeability measurements as a standard method in cultural heritage applications. - Highlights: • Measurements of capillary absorption are compared to in-situ permeability. • We obtain pore size distribution and connectivity by using micro-CT. • These properties explain correlation between permeability and capillarity. • Correlation between both methods is good to excellent. • Permeability measurements could be a good alternative to capillarity measurement.

Effect of pore-size distribution on the collapse behaviour of anthropogenic sandy soil deposits

Directory of Open Access Journals (Sweden)

Baille Wiebke

2016-01-01

Full Text Available In the former open-pit mines of the Lusatian region in Germany, several liquefaction events have occurred during the recent years in the anthropogenic deposits made of very loose sandy soils. These events are related to the rising ground water table after the stop of controlled ground water lowering. The very loose state is due to the formation of sand aggregates (pseudo-grains during the deposition process. The pseudo-grains enclose larger voids of dimension greater than the single sand grain. Wetting induced collapse of the pseudo-grains is presumed to be one of the possible mechanisms triggering liquefaction. In the present study, the effect of larger voids on the wetting induced deformation behaviour of sandy soils is experimentally investigated by laboratory box tests. The deformation field in the sample during wetting was measured using Digital Image Correlation (DIC technique. The results show that the observed deformations are affected by the pore size distribution, thus the amount of voids between the pseudo-grains (macro-void ratio and the voids inside the pseudo-grains (matrix void ratio. The global void ratio of a sandy soil is not sufficient as single state parameter, but the pore size distribution has to be taken into account, experimentally as well as in modelling.

Behavior of Copper Oxide Nanoparticles in Soil Pore Waters as Influenced by Soil Characteristics, Bacteria, and Wheat Roots

OpenAIRE

Hortin, Joshua

2017-01-01

The goal of this project was to study the behavior of copper oxide nanoparticles in soil environments. Copper oxide nanoparticles have antimicrobial properties and may also be used in agricultural settings to provide a source of copper for plant health, but accidental or misapplication of these nanoparticles to soil may be damaging to the plant and its associated bacteria. Dissolved soil organic matter that is present in soil pore waters dissolved nanoparticles, but did not dissolve the ex...

Infiltration and Soil Loss Changes during the Growing Season under Ploughing and Conservation Tillage

Directory of Open Access Journals (Sweden)

Gergely Jakab

2017-09-01

Full Text Available Decreased water retention and increased runoff and soil loss are of special importance concerning soil degradation of hilly crop fields. In this study, plots under ploughing (conventional tillage (PT and conservation tillage (CT; 15 years were compared. Rainfall simulation on 6 m2 plots was applied to determine infiltration and soil loss during the growing season. Results were compared with those measured from 1200 m2 plots exposed to natural rainfalls in 2016. Infiltration was always higher under CT than PT, whereas the highest infiltration was measured under the cover crop condition. Infiltration under seedbed and stubble resulted in uncertainties, which suggests that natural pore formation can be more effective at improving soil drainage potential than can temporary improvements created by soil tillage operations. Soil erodibility was higher under PT for each soil status; however, the seedbed condition triggered the highest values. For CT, soil loss volume was only a function of runoff volume at both scales. Contrarily, on PT plots, some extreme precipitation events triggered extremely high soil loss owing to linear erosion, which meant no direct connection existed between the scales. Improved soil conditions due to conservation practice are more important for decreasing soil loss than the better surface conditions.

A long-term soil structure observatory for post-compaction soil structure evolution: design and initial soil structure recovery observations

Science.gov (United States)

Keller, Thomas; Colombi, Tino; Ruiz, Siul; Grahm, Lina; Reiser, René; Rek, Jan; Oberholzer, Hans-Rudolf; Schymanski, Stanislaus; Walter, Achim; Or, Dani

2016-04-01

Soil compaction due to agricultural vehicular traffic alters the geometrical arrangement of soil constituents, thereby modifying mechanical properties and pore spaces that affect a range of soil hydro-ecological functions. The ecological and economic costs of soil compaction are dependent on the immediate impact on soil functions during the compaction event, and a function of the recovery time. In contrast to a wealth of soil compaction information, mechanisms and rates of soil structure recovery remain largely unknown. A long-term (>10-yr) soil structure observatory (SSO) was established in 2014 on a loamy soil in Zurich, Switzerland, to quantify rates and mechanisms of structure recovery of compacted arable soil under different post-compaction management treatments. We implemented three initial compaction treatments (using a two-axle agricultural vehicle with 8 Mg wheel load): compaction of the entire plot area (i.e. track-by-track), compaction in wheel tracks, and no compaction. After compaction, we implemented four post-compaction soil management systems: bare soil (BS), permanent grass (PG), crop rotation without mechanical loosening (NT), and crop rotation under conventional tillage (CT). BS and PG provide insights into uninterrupted natural processes of soil structure regeneration under reduced (BS) and normal biological activity (PG). The two cropping systems (NT and CT) enable insights into soil structure recovery under common agricultural practices with minimal (NT) and conventional mechanical soil disturbance (CT). Observations include periodic sampling and measurements of soil physical properties, earthworm abundance, crop measures, electrical resistivity and ground penetrating radar imaging, and continuous monitoring of state variables - soil moisture, temperature, CO2 and O2 concentrations, redox potential and oxygen diffusion rates - for which a network of sensors was installed at various depths (0-1 m). Initial compaction increased soil bulk density

Correlation Between Cone Penetration Rate And Measured Cone Penetration Parameters In Silty Soils

DEFF Research Database (Denmark)

Poulsen, Rikke; Nielsen, Benjaminn Nordahl; Ibsen, Lars Bo

2013-01-01

This paper shows, how a change in cone penetration rate affects the cone penetration measurements, hence the cone resistance, pore pressure, and sleeve friction in silty soil. The standard rate of penetration is 20 mm/s, and it is generally accepted that undrained penetration occurs in clay while...... drained penetration occurs in sand. When lowering the penetration rate, the soil pore water starts to dissipate and a change in the drainage condition is seen. In intermediate soils such as silty soils, the standard cone penetration rate may result in a drainage condition that could be undrained......, partially or fully drained. However, lowering the penetration rate in silty soils has a great significance because of the soil permeability, and only a small change in penetration rate will result in changed cone penetration measurements. In this paper, analyses will be done on data from 15 field cone...

Comparison of predicted and observed pore pressure increases on Rio Blanco

International Nuclear Information System (INIS)

Banister, J.R.; Ellett, D.M.; Pyke, R.; Winters, L.

1976-01-01

The RIO BLANCO event presented the opportunity to monitor, under controlled conditions in the field, the increase in pore pressures resulting from ground motion similar to an earthquake. In situ measurements of pore pressure changes were made by Sandia Laboratories and Dames and Moore. This report contains the results of laboratory tests believed to be indicative in assessing the magnitude of pore pressure increases and probability of soil liquefaction. These include triaxial load tests, gradation of grain size, and relative density. No liquefaction was observed in the field, and the increase of in situ pore pressures were much less than expected from laboratory measurements. Allied subjects presented in this report are pore pressure propagation and dissipation profiles, the previously unpublished pore pressure measurements made by Dames and Moore, and the boring logs for the various sites where measurements were taken. It is concluded that methods used to predict pore pressure increases and liquefaction potential are overly conservative, at least for these alluvial and colluvial soils found in Colorado

Anisotropy of the Subsoil Pore System As Affected by High Mechanical Stresses

DEFF Research Database (Denmark)

Berisso, Feto Esimo; Schjønning, Per; Keller, Thomas

and horizontally at 0.3, 0.5, 0.7 and 0.9 m depths (the two lower depths only in Sweden) in two treatments (compacted and control). Water retention, air permeability (ka) and gas diffusivity (Ds/Do) were determined in the laboratory. We defined an anisotropy factor (AF) as the ratio of a certain soil property...... measured in the horizontal direction to the same property measured in vertical direction. For both soils and both treatments, ka at -100 hPa was higher in vertical direction than in horizontal direction (AF ....12 – 0.34 in the sandy loam soil and clay soil, respectively. AF was closer to 1 for the compacted treatments for both soils. We applied Ball’s tube model for the pore system and calculated the number of soil pores in a given soil cross-sectional area and the tube-equivalent pore diameter. Vertical cores...

Pore size determination from charged particle energy loss measurement

International Nuclear Information System (INIS)

Brady, F.P.; Armitage, B.H.

1977-01-01

A new method aimed at measuring porosity and mean pore size in materials has been developed at Harwell. The energy width or variance of a transmitted or backscattered charged particle beam is measured and related to the mean pore size via the assumption that the variance in total path length in the porous material is given by (Δx 2 )=na 2 , where n is the mean number of pores and a the mean pore size. It is shown on the basis of a general and rigorous theory of total path length distribution that this approximation can give rise to large errors in the mean pore size determination particularly in the case of large porosities (epsilon>0.5). In practice it is found that it is not easy to utilize fully the general theory because accurate measurements of the first four moments are required to determine the means and variances of the pore and inter-pore length distributions. Several models for these distributions are proposed. When these are incorporated in the general theory the determinations of mean pore size from experimental measurements on powder samples are in good agreement with values determined by other methods. (Auth.)

Soil compaction: Evaluation of stress transmission and resulting soil structure

Science.gov (United States)

Naveed, Muhammad; Schjønning, Per; Keller, Thomas; Lamande, Mathieu

2016-04-01

Accurate estimation of stress transmission and resultant deformation in soil profiles is a prerequisite for the development of predictive models and decision support tools for preventing soil compaction. Numerous studies have been carried out on the effects of soil compaction, whilst relatively few studies have focused on the cause (mode of stress transmission in the soil). We have coupled both cause and effects together in the present study by carrying out partially confined compression tests on (1) wet aggregates, (2) air dry aggregates, and (3) intact soils to quantify stress transmission and compaction-resulted soil structure at the same time. Stress transmission was quantified using both X-ray CT and Tactilus sensor mat, and soil-pore structure was quantified using X-ray CT. Our results imply that stress transmission through soil highly depends on the magnitude of applied load and aggregate strength. As soon as the applied load is lower than the aggregate strength, the mode of stress transmission is discrete as stresses were mainly transmitted through chain of aggregates. With increasing applied load soil aggregates start deforming that transformed heterogeneous soil into homogenous, as a result stress transmission mode was shifted from discrete towards more like a continuum. Continuum-like stress transmission mode was better simulated with Boussinesq (1885) model based on theory of elasticity compared to discrete. The soil-pore structure was greatly affected by increasing applied stresses. Total porosity was reduced 5-16% and macroporosity 50-85% at 620 kPa applied stress for the intact soils. Similarly, significant changes in the morphological indices of the macropore space were also observed with increasing applied stresses.

Characterization of tillage effects on soil permeability using different measures of macroporosity derived from tension infiltrometry

Science.gov (United States)

Bodner, G.; Schwen, A.; Scholl, P.; Kammerer, G.; Buchan, G.; Kaul, H.-P.; Loiskandl, W.

2010-05-01

Soil macroporosity is a highly dynamic property influenced by environmental factors, such as raindrop impact, wetting-drying and freezing-thawing cycles, soil biota and plant roots, as well as agricultural management measures. Macroporosity represents an important indicator of soil physical quality, particularly in relation to the site specific water transmission properties, and can be used as a sensitive measure to assess soil structural degradation. Its quantification is also required for the parameterization of dual porosity models that are frequently used in environmental impact studies on erosion and solute (pesticide, nitrate) leaching. The importance of soil macroporosity for the water transport properties of the soil and its complexity due to high spatio-temporal heterogeneity make its quantitative assessment still a challenging task. Tension infiltrometers have been shown to be adequate measurement devices to obtain data in the near-saturated range of water flow where structural (macro)pores are dominating the transport process. Different methods have been used to derive water transmission characteristics from tension infiltrometer measurements. Moret and Arrúe (2007) differentiated between using a minimum equivalent capillary pore radius and a flow weighted mean pore radius to obtain representative macropore flow properties from tension infiltrometer data. Beside direct approaches based on Wooding's equation, also inverse methods have been applied to obtain soil hydraulic properties (Šimůnek et al. 1998). Using a dual porosity model in the inverse procedure allows estimating parameters in the dynamic near-saturated range by numerical optimization to the infiltration measurements, while fixing parameters in the more stable textural range of small pores using e.g. pressure plate data or even pedotransfer functions. The present work presents a comparison of quantitative measures of soil macroporosity derived from tension infiltrometer data by different

Pore-scale modeling of capillary trapping in water-wet porous media: A new cooperative pore-body filling model

Science.gov (United States)

Ruspini, L. C.; Farokhpoor, R.; Øren, P. E.

2017-10-01

We present a pore-network model study of capillary trapping in water-wet porous media. The amount and distribution of trapped non-wetting phase is determined by the competition between two trapping mechanisms - snap-off and cooperative pore-body filling. We develop a new model to describe the pore-body filling mechanism in geologically realistic pore-networks. The model accounts for the geometrical characteristics of the pore, the spatial location of the connecting throats and the local fluid topology at the time of the displacement. We validate the model by comparing computed capillary trapping curves with published data for four different water-wet rocks. Computations are performed on pore-networks extracted from micro-CT images and process-based reconstructions of the actual rocks used in the experiments. Compared with commonly used stochastic models, the new model describes more accurately the experimental measurements, especially for well connected porous systems where trapping is controlled by subtleties of the pore structure. The new model successfully predicts relative permeabilities and residual saturation for Bentheimer sandstone using in-situ measured contact angles as input to the simulations. The simulated trapped cluster size distributions are compared with predictions from percolation theory.

A Tilt, Soil Moisture, and Pore Water Pressure Sensor System for Slope Monitoring Applications

Directory of Open Access Journals (Sweden)

Rosanno de Dios

2009-06-01

Full Text Available This paper describes the design, implementation and characterization of a sensor network intended for monitoring of slope deformation and potential failures. The sensor network system consists of a tilt and moisture sensor column, a pore water pressure sensor column and a personal computer for data storage and processing. The tilt sensor column consists of several pipe segments containing tri-axial accelerometers and signal processing electronics. Each segment is joined together by flexible joints to allow for the column to deform and subsequently track underground movement. Capacitive-type sensors for soil moisture measurement are also included in the sensor column, which are used to measure the soil moisture at different depths. The measurements at each segment are transferred via a Controller Area Network (CAN bus, where the CAN master node is located at the top of the column above ground. The CAN master node transmits the collected data from the slave nodes via a wireless connection to a personal computer that performs data storage, processing and display via a Python-based graphical user interface (GUI. The entire system was deployed and characterized on a small-scale slope model. Slope failure was induced via water seepage and the system was demonstrated to ably measure the inclination and soil moisture content throughout the landslide event.

Assessing the influence of the rhizosphere on soil hydraulic properties using X-ray computed tomography and numerical modelling.

Science.gov (United States)

Daly, Keith R; Mooney, Sacha J; Bennett, Malcolm J; Crout, Neil M J; Roose, Tiina; Tracy, Saoirse R

2015-04-01

Understanding the dynamics of water distribution in soil is crucial for enhancing our knowledge of managing soil and water resources. The application of X-ray computed tomography (CT) to the plant and soil sciences is now well established. However, few studies have utilized the technique for visualizing water in soil pore spaces. Here this method is utilized to visualize the water in soil in situ and in three-dimensions at successive reductive matric potentials in bulk and rhizosphere soil. The measurements are combined with numerical modelling to determine the unsaturated hydraulic conductivity, providing a complete picture of the hydraulic properties of the soil. The technique was performed on soil cores that were sampled adjacent to established roots (rhizosphere soil) and from soil that had not been influenced by roots (bulk soil). A water release curve was obtained for the different soil types using measurements of their pore geometries derived from CT imaging and verified using conventional methods, such as pressure plates. The water, soil, and air phases from the images were segmented and quantified using image analysis. The water release characteristics obtained for the contrasting soils showed clear differences in hydraulic properties between rhizosphere and bulk soil, especially in clay soil. The data suggest that soils influenced by roots (rhizosphere soil) are less porous due to increased aggregation when compared with bulk soil. The information and insights obtained on the hydraulic properties of rhizosphere and bulk soil will enhance our understanding of rhizosphere biophysics and improve current water uptake models. © The Author 2015. Published by Oxford University Press on behalf of the Society for Experimental Biology.

Impact of matric potential and pore size distribution on growth dynamics of filamentous and non-filamentous soil bacteria.

Science.gov (United States)

Wolf, Alexandra B; Vos, Michiel; de Boer, Wietse; Kowalchuk, George A

2013-01-01

The filamentous growth form is an important strategy for soil microbes to bridge air-filled pores in unsaturated soils. In particular, fungi perform better than bacteria in soils during drought, a property that has been ascribed to the hyphal growth form of fungi. However, it is unknown if, and to what extent, filamentous bacteria may also display similar advantages over non-filamentous bacteria in soils with low hydraulic connectivity. In addition to allowing for microbial interactions and competition across connected micro-sites, water films also facilitate the motility of non-filamentous bacteria. To examine these issues, we constructed and characterized a series of quartz sand microcosms differing in matric potential and pore size distribution and, consequently, in connection of micro-habitats via water films. Our sand microcosms were used to examine the individual and competitive responses of a filamentous bacterium (Streptomyces atratus) and a motile rod-shaped bacterium (Bacillus weihenstephanensis) to differences in pore sizes and matric potential. The Bacillus strain had an initial advantage in all sand microcosms, which could be attributed to its faster growth rate. At later stages of the incubation, Streptomyces became dominant in microcosms with low connectivity (coarse pores and dry conditions). These data, combined with information on bacterial motility (expansion potential) across a range of pore-size and moisture conditions, suggest that, like their much larger fungal counterparts, filamentous bacteria also use this growth form to facilitate growth and expansion under conditions of low hydraulic conductivity. The sand microcosm system developed and used in this study allowed for precise manipulation of hydraulic properties and pore size distribution, thereby providing a useful approach for future examinations of how these properties influence the composition, diversity and function of soil-borne microbial communities.

Impact of matric potential and pore size distribution on growth dynamics of filamentous and non-filamentous soil bacteria.

Directory of Open Access Journals (Sweden)

Alexandra B Wolf

Full Text Available The filamentous growth form is an important strategy for soil microbes to bridge air-filled pores in unsaturated soils. In particular, fungi perform better than bacteria in soils during drought, a property that has been ascribed to the hyphal growth form of fungi. However, it is unknown if, and to what extent, filamentous bacteria may also display similar advantages over non-filamentous bacteria in soils with low hydraulic connectivity. In addition to allowing for microbial interactions and competition across connected micro-sites, water films also facilitate the motility of non-filamentous bacteria. To examine these issues, we constructed and characterized a series of quartz sand microcosms differing in matric potential and pore size distribution and, consequently, in connection of micro-habitats via water films. Our sand microcosms were used to examine the individual and competitive responses of a filamentous bacterium (Streptomyces atratus and a motile rod-shaped bacterium (Bacillus weihenstephanensis to differences in pore sizes and matric potential. The Bacillus strain had an initial advantage in all sand microcosms, which could be attributed to its faster growth rate. At later stages of the incubation, Streptomyces became dominant in microcosms with low connectivity (coarse pores and dry conditions. These data, combined with information on bacterial motility (expansion potential across a range of pore-size and moisture conditions, suggest that, like their much larger fungal counterparts, filamentous bacteria also use this growth form to facilitate growth and expansion under conditions of low hydraulic conductivity. The sand microcosm system developed and used in this study allowed for precise manipulation of hydraulic properties and pore size distribution, thereby providing a useful approach for future examinations of how these properties influence the composition, diversity and function of soil-borne microbial communities.

Eleven years' effect of conservation practices for temperate sandy loams: II. Soil pore characteristics

DEFF Research Database (Denmark)

Abdollahi, Lotfallah; Munkholm, Lars Juhl

2017-01-01

Conservation agriculture (CA) is regarded by many as a sustainable intensification strategy. Minimal soil disturbance in combination with residue retention are important CA components. This study examined the long-term effects of crop rotation, residue retention, and tillage on soil pore characte......Conservation agriculture (CA) is regarded by many as a sustainable intensification strategy. Minimal soil disturbance in combination with residue retention are important CA components. This study examined the long-term effects of crop rotation, residue retention, and tillage on soil pore...... characteristics of two Danish sandy loams. Rotation R2 is a rotation of winter crops (mainly cereals) with residues retained, rotation R3 a mix of winter and spring crops (mainly cereals) with residues removed, and rotation R4 the same mix of winter and spring crops, but with residues retained. Each rotation...... included the tillage treatments: moldboard plowing to 20-cm depth (MP), harrowing to 8- to 10-cm depth (H) and direct drilling (D). Soil cores were taken from the topsoil (4–8, 12–16, 18–27 cm) in mid-autumn 2013 and early spring 2014. Water retention, air permeability, and gas diffusivity was determined...

Syncrude`s highway berm: part 3 of 5 - Soil parameters (pore pressure parameters and settlement from inundation)

Energy Technology Data Exchange (ETDEWEB)

Cameron, R.; Fong, V.; Ashton, C.; Strueby, B. [Syncrude Canada Ltd., Edmonton, AB (Canada)

1995-12-31

Difficulties in predicting pore fluid pressures in the fills composing the highway berm were discussed. The pore water pressures in the in-situ clay foundation units were expected to be very sensitive to water content. Over 200 piezometer tips were installed into fill and in situ soil units, and results of the measurements were reported. The in situ basal foundation clays and sands were found to have a similar pore pressure ratio of typically less than 0.25. Fill pore fluid pressure ratios determined in the field varied according to density when loose fills were compared to very dense fills. To illustrate, when the fill was 86% to 91% of maximum Standard Proctor Density, the pore pressure ratio value was not dependent on fluid content. When the fill was densely compacted to 98% Standard Proctor Density, the pore pressure ratio was largely dependent on the fluid content as it related to the optimum fluid content determined from Standard Proctor testing. Significant first-time wetting settlement was observed to occur with fills at initial densities of around 90% of maximum Standard Proctor dry density. Settlements for fills placed initially above 97% Standard Proctor Density generally had inundation settlements of less than 0.3% of fill thickness predicted from laboratory testing. 4 refs., 10 figs., 1 tab.

Pore Scale Investigation of Wettability Alteration Through Chemically-Tuned Waterflooding in Oil-Wet Carbonate Rocks Using X-Ray Micro-Ct Imaging

Science.gov (United States)

Tawfik, M. S.; Karpyn, Z.

2017-12-01

Carbonate reservoirs host more than half of the remaining oil reserves worldwide. Due to their complex pore structure and intermediate to oil-wet nature, it is challenging to produce the remaining oil from these formations. For two decades, chemically tuned waterflooding (CTWF) has gained the attention of many researchers. Experimental, numerical, and field studies suggest that changes in ion composition of injected brine can increase oil recovery in carbonate reservoirs via wettability alteration. However, previous studies explaining the improvement in oil recovery by wettability alteration deduce wettability based on indirect measurements, including sessile drop contact angle measurements on polished rocks, relative permeability, chromatographic separation of SCN- and potential determining ions (PDIs), etc. CTWF literature offers no direct measurement of wettability alteration at the pore scale. This study proposes a direct pore-scale measurement of changes in interfacial curvatures before and after CTWF. Micro-coreflood experiments are performed to investigate the effect of injection brine salinity, ion composition and temperature on rock wettability at the pore scale. X-ray micro-CT scanning is used to obtain 3D image sets to calculate in-situ contact angle distributions. The study also aims to find a correlation between the magnitude of improvement in oil recovery at the macro-scale and the corresponding contact angle distribution at the pore-scale at different experimental conditions. Hence, macro-scale coreflood experiments are performed using the same conditions as the micro-corefloods. Macro-scale coreflood experiments have shown that brines with higher concentration of Ca2+, Mg2+ and SO42- ions have higher recoveries compared to standard seawater. This translates to wettability alteration into a more intermediate-wet state. This study enhances the understanding of the pore-scale physico-chemical mechanisms controlling wettability alteration via CTWF

Physical soil architectural traits are functionally linked to carbon decomposition and bacterial diversity

Science.gov (United States)

Rabbi, S. M. F.; Daniel, H.; Lockwood, P. V.; MacDonald, C.; Pereg, L.; Tighe, M.; Wilson, B. R.; Young, I. M.

2016-09-01

Aggregates play a key role in protecting soil organic carbon (SOC) from microbial decomposition. The objectives of this study were to investigate the influence of pore geometry on the organic carbon decomposition rate and bacterial diversity in both macro- (250-2000 μm) and micro-aggregates (53-250 μm) using field samples. Four sites of contrasting land use on Alfisols (i.e. native pasture, crop/pasture rotation, woodland) were investigated. 3D Pore geometry of the micro-aggregates and macro-aggregates were examined by X-ray computed tomography (μCT). The occluded particulate organic carbon (oPOC) of aggregates was measured by size and density fractionation methods. Micro-aggregates had 54% less μCT observed porosity but 64% more oPOC compared with macro-aggregates. In addition, the pore connectivity in micro-aggregates was lower than macro-aggregates. Despite both lower μCT observed porosity and pore connectivity in micro-aggregates, the organic carbon decomposition rate constant (Ksoc) was similar in both aggregate size ranges. Structural equation modelling showed a strong positive relationship of the concentration of oPOC with bacterial diversity in aggregates. We use these findings to propose a conceptual model that illustrates the dynamic links between substrate, bacterial diversity, and pore geometry that suggests a structural explanation for differences in bacterial diversity across aggregate sizes.

Synchrotron-based micro and nanotomographic investigations of soil aggregate microbial and pore structure

Science.gov (United States)

Kemner, K. M.; O'Brien, S.; Whiteside, M. D.; Sholto-Douglas, D.; Antipova, O.; Bailey, V.; Boyanov, M.; Dohnalkova, A.; Gursoy, D.; Kovarik, L.; Lai, B.; Roehrig, C.; Vogt, S.

2017-12-01

Soil is a highly complex network of pore spaces, minerals, and organic matter (e.g., roots, fungi, and bacteria), making it physically heterogeneous over nano- to macro-scales. Such complexity arises from feedbacks between physical processes and biological activity that generate a dynamic, self-organizing 3D complex. Since we first demonstrated the utility of synchrotron-based transmission tomography to image internal soil aggregate structure [Kemner et al., 1998], we and many other researchers have made use of and have advanced the application of this technique. However, our understanding of how microbes and microbial metabolism are distributed throughout soil aggregates is limited, because no technique is available to image the soil pore network and the life that inhabits it. X-ray transmission microtomography can provide highly detailed 3D renderings of soil structure but cannot distinguish cells from other electron-light material such as air or water. However, the use of CdSe quantum dots (QDs) as a reporter of bacterial presence enables us to overcome this constraint, instilling bacterial cells with enough contrast to detect them and their metabolic functions in their opaque soil habitat, with hard x-rays capable of penetrating 3D soil structures at high resolution. Previous transmission tomographic imaging of soil aggregates with high energy synchrotron x-rays has demonstrated 700 nm3 voxel spatial resolution. These and recent results from nanotomographic x-ray transmission imaging of soil aggregates with 30 nm3 voxel resolution will be presented. In addition, results of submicron voxel-sized x-ray fluorescence 3D imaging to determine microbial distributions within soil aggregates and the critical role to be played by the upgrade of the Advanced Photon Source for 100-1000X increases in hard x-ray brilliance will also be presented. *Kemner, et al., SPIE 3449, 45-53, 1998

Geochemical controls on the composition of soil pore waters beneath a mixed waste disposal site in the unsaturated zone

International Nuclear Information System (INIS)

Rawson, S.A.; Hubbell, J.M.

1989-01-01

Soil pore waters are collected routinely to monitor a thick unsaturated zone that separates a mixed waste disposal site containing transuranic and low-level radioactive wastes from the Snake River Plain aquifer. The chemistry of the soil pore waters has been studied to evaluate the possible control on the water composition by mineral equilibria and determine the extent, if any, of migration of radionuclides from the disposal site. Geochemical codes were used to perform speciation calculations for the waters. The results of speciation calculations suggest that the installation of the lysimeters affects the observed silica contents of the soil pore waters. The results also establish those chemical parameters that are controlled by secondary mineral precipitation. 15 refs., 6 figs., 1 tab

The evaluation/application of Hydrus-2D model for simulating macro-pores flow in loess soil

OpenAIRE

Xuexuan Xu; Shahmir Ali Kalhoro; Wen yuan Chen; Sajjad Raza

2017-01-01

Soil hydraulic properties were mainly governed by soil structures especially when the structures is full of the connected soil macro-pores. Therefore, the good hydrological models need to be well documented for revealing the process of soil water movement affected by soil medium. The Hydrus-2D model with double domain was recommended in simulating water movement in a heterogeneous medium of soil. To evaluate the performance of the double domain Hydrus-2D model in loess soil, the dynamic of so...

Influence of pore structure on solute transport in degraded and undegraded fen peat soils

Directory of Open Access Journals (Sweden)

C. Kleimeier

2017-10-01

Full Text Available In peat soils, decomposition and degradation reduce the proportion of large pores by breaking down plant debris into smaller fragments and infilling inter-particle pore spaces. This affects water flow and solute migration which, in turn, influence reactive transport processes and biogeochemical functions. In this study we conducted flow-through reactor experiments to investigate the interplay between pore structure and solute transport in samples of undegraded and degraded peat collected in Canada and Germany, respectively. The pore size distributions and transport parameters were characterised using the breakthrough curve and two-region non-equilibrium transport model analyses for a non-reactive solute. The results of transport characterisation showed a higher fraction of immobile pores in the degraded peat with higher diffusive exchanges of solutes between the mobile and immobile pores associated with the dual-porosity structure. The rates of steady-state potential nitrate reduction were compared with pore fractions and exchange coefficients to investigate the influence of pore structure on the rates of nitrate reduction. The results indicated that the degraded peat has potential to provide the necessary boundary conditions to support nitrate removal and serves as a favourable substrate for denitrification, due to the nature of its pore structure and its lower organic carbon content compared to undegraded peat.

Characterization of Coal Micro-Pore Structure and Simulation on the Seepage Rules of Low-Pressure Water Based on CT Scanning Data

Directory of Open Access Journals (Sweden)

Gang Zhou

2016-07-01

Full Text Available This paper used the X-ray three-dimensional (3D microscope and acquired, through CT scanning, the 3D data of the long-frame coal sample from the Daliuta Coal Mine. Then, the 3D datacube reconstructed from the coal’s CT scanning data was visualized with the use of Avizo, an advanced visualization software (FEI, Hillsboro, OR, USA. By means of a gray-scale segmentation technique, the model of the coal’s micro-pore structure was extracted from the object region, and the precise characterization was then conducted. Finally, the numerical simulation on the water seepage characteristics in the coal micro-pores model under the pressure of 3 MPa was performed on the CFX platform. Results show that the seepage of low-pressure water exhibited preference to the channels with large pore radii, short paths, and short distance from the outlet. The seepage pressure of low-pressure water decreased gradually along the seepage direction, while the seepage velocity of low-pressure water decreased gradually along the direction from the pore center to the wall. Regarding the single-channel seepage behaviors, the seepage velocity and mass flow rate of water seepage in the X direction were the largest, followed by the values of the seepage in the Y direction, and the seepage velocity and mass flow rate of water seepage in the Z direction were the smallest. Compared with the results in single-channel seepage, the dual-channel seepage in the direction of (X + Y and the multi-channel seepage in the direction of (X + Y + Z exhibited significant increases in the overall seepage velocity. The present study extends the application of 3D CT scanning data and provides a new idea and approach for exploring the seepage rules in coal micro-pore structures.

Bioaccessible Porosity in Soil Aggregates and Implications for Biodegradation of High Molecular Weight Petroleum Compounds.

Science.gov (United States)

Akbari, Ali; Ghoshal, Subhasis

2015-12-15

We evaluated the role of soil aggregate pore size on biodegradation of essentially insoluble petroleum hydrocarbons that are biodegraded primarily at the oil-water interface. The size and spatial distribution of pores in aggregates sampled from biodegradation experiments of a clayey, aggregated, hydrocarbon-contaminated soil with relatively high bioremediation end point were characterized by image analyses of X-ray micro-CT scans and N2 adsorption. To determine the bioaccessible pore sizes, we performed separate experiments to assess the ability of hydrocarbon degrading bacteria isolated from the soil to pass through membranes with specific sized pores and to access hexadecane (model insoluble hydrocarbon). Hexadecane biodegradation occurred only when pores were 5 μm or larger, and did not occur when pores were 3 μm and smaller. In clayey aggregates, ∼ 25% of the aggregate volume was attributed to pores larger than 4 μm, which was comparable to that in aggregates from a sandy, hydrocarbon-contaminated soil (~23%) scanned for comparison. The ratio of volumes of inaccessible pores (4 μm) in the clayey aggregates was 0.32, whereas in the sandy aggregates it was approximately 10 times lower. The role of soil microstructure on attainable bioremediation end points could be qualitatively assessed in various soils by the aggregate characterization approach outlined herein.

Batch experiments versus soil pore water extraction--what makes the difference in isoproturon (bio-)availability?

Science.gov (United States)

Folberth, Christian; Suhadolc, Metka; Scherb, Hagen; Munch, Jean Charles; Schroll, Reiner

2009-10-01

Two approaches to determine pesticide (bio-)availability in soils (i) batch experiments with "extraction with an excess of water" (EEW) and (ii) the recently introduced "soil pore water (PW) extraction" of pesticide incubated soil samples have been compared with regard to the sorption behavior of the model compound isoproturon in soils. A significant correlation between TOC and adsorbed pesticide amount was found when using the EEW approach. In contrast, there was no correlation between TOC and adsorbed isoproturon when using the in situ PW extraction method. Furthermore, sorption was higher at all concentrations in the EEW method when comparing the distribution coefficients (K(d)) for both methods. Over all, sorption in incubated soil samples at an identical water tension (-15 kPa) and soil density (1.3 g cm(-3)) appears to be controlled by a complex combination of sorption driving soil parameters. Isoproturon bioavailability was found to be governed in different soils by binding strength and availability of sorption sites as well as water content, whereas the dominance of either one of these factors seems to depend on the individual composition and characteristics of the respective soil sample. Using multiple linear regression analysis we obtained furthermore indications that the soil pore structure is affected by the EEW method due to disaggregation, resulting in a higher availability of pesticide sorption sites than in undisturbed soil samples. Therefore, it can be concluded that isoproturon sorption is overestimated when using the EEW method, which should be taken into account when using data from this approach or similar batch techniques for risk assessment analysis.

Measurements of pore-scale flow through apertures

Energy Technology Data Exchange (ETDEWEB)

Chojnicki, Kirsten [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States)

2017-09-01

Pore-scale aperture effects on flow in pore networks was studied in the laboratory to provide a parameterization for use in transport models. Four cases were considered: regular and irregular pillar/pore alignment with and without an aperture. The velocity field of each case was measured and simulated, providing quantitatively comparable results. Two aperture effect parameterizations were considered: permeability and transmission. Permeability values varied by an order of magnitude between the cases with and without apertures. However, transmission did not correlate with permeability. Despite having much greater permeability the regular aperture case permitted less transmission than the regular case. Moreover, both irregular cases had greater transmission than the regular cases, a difference not supported by the permeabilities. Overall, these findings suggest that pore-scale aperture effects on flow though a pore-network may not be adequately captured by properties such as permeability for applications that are interested in determining particle transport volume and timing.

Gas transport and subsoil pore characteristics

DEFF Research Database (Denmark)

Berisso, Feto Esimo; Schjønning, Per; Keller, Thomas

2013-01-01

Arrangements of elementary soil particles during soil deposition and subsequent biological and physical processes in long-term pedogenesis are expected to lead to anisotropy of the non-tilled subsoil pore system. Soil compaction by agricultural machinery is known to affect soil pore characteristics...... were sampled in vertical and horizontal directions from 0.3, 0.5, 0.7 and 0.9 m depth (the two lower depths only in Sweden). In the laboratory, water retention, air permeability (ka) and gas diffusivity (Ds/D0) were determined. For the sandy clay loam, morphological characteristics of pores (effective......). In the sandy clay loam soil, dB and nB displayed significant anisotropy (FAcharacteristics because of its origin...

Modeling Stokes flow in real pore geometries derived by high resolution micro CT imaging

Science.gov (United States)

Halisch, M.; Müller, C.

2012-04-01

Meanwhile, numerical modeling of rock properties forms an important part of modern petrophysics. Substantially, equivalent rock models are used to describe and assess specific properties and phenomena, like fluid transport or complex electrical properties. In recent years, non-destructive computed X-ray tomography got more and more important - not only to take a quick and three dimensional look into rock samples but also to get access to in-situ sample information for highly accurate modeling purposes. Due to - by now - very high resolution of the 3D CT data sets (micron- to submicron range) also very small structures and sample features - e.g. micro porosity - can be visualized and used for numerical models of very high accuracy. Special demands even arise before numerical modeling can take place. Inappropriate filter applications (e.g. improper type of filter, wrong kernel, etc.) may lead to a significant corruption of spatial sample structure and / or even sample or void space volume. Because of these difficulties, especially small scale mineral- and pore space textures are very often lost and valuable in-situ information is erased. Segmentation of important sample features - porosity as well as rock matrix - based upon grayscale values strongly depends upon the scan quality and upon the experience of the application engineer, respectively. If the threshold for matrix-porosity separation is set too low, porosity can be quickly (and even more, due to restrictions of scanning resolution) underestimated. Contrary to this, a too high threshold over-determines porosity and small void space features as well as interfaces are changed and falsified. Image based phase separation in close combination with "conventional" analytics, as scanning electron microscopy or thin sectioning, greatly increase the reliability of this preliminary work. For segmentation and quantification purposes, a special CT imaging and processing software (Avizo Fire) has been used. By using this

Soil physico-hydrical properties resulting from the management in Integrated Production Systems

Directory of Open Access Journals (Sweden)

André Carlos Auler

Full Text Available Anthropic action, such as the soil use and management systems, promote changes in the soil structure. These changes might hamper the development of plants in soil management practices that involve its mobilization, and the negative effects might be increased due to intensive use. The aim of this study was to evaluate the physico-hydrical properties of a Haplohumox in integrated production systems under different soil managements. The soil superficial (0.0-0.10 m and sub-superficial (0.10-0.20 m layers were evaluated in the different systems: conventional tillage (CT, minimum tillage (MT, no-tillage (NT and chiseled no-tillage (CNT, taking into consideration the annual ryegrass cropped for different uses [cover crop (C, grazing (G and silage (S] during the winter. Soil bulk density (Db, total porosity (TP, macro (Ma and microporosity (Mi, water retention curves (SWRC and water retention due to pore size (r were determined. The annual ryegrass used as C produced lower Db and Mi and higher TP and Ma in CT, MT and CNT systems. No difference was verified between G and S in any of the management systems or soil layers. The superficial layer SWRC presented similar behavior regarding CT, MT and CNT. Under NT, C resulted in higher water retention. However, G and S provided higher water retention due to the pore size in this system.

X-ray microtomography in the micromorphologic characterization of soil submitted to different management

International Nuclear Information System (INIS)

Passoni, Sabrina

2013-01-01

The X-ray computed microtomography (CT) represents a non-invasive technique that can be used with success to analyze physical properties by the soil scientists without destroying the structure of the soil. The technique has as advantage over conventional methods the characterization of the soil porous system in three dimensions, which allow morphological property analyses such as connectivity and tortuosity of the pores. However, as the soil is a non-homogeneous and complex system, the CT technique needs specific methodologies for digital image processing, mainly during the segmentation procedure. The objectives of this work were: 1) to develop a methodology for microtomographic digital image processing; 2) to characterize the soil structure by using micromorphology analysis of samples submitted to non-tillage and conventional systems collected in three distinct layers (0-10, 10-20 and 20-30 cm); and 3) to identify possible changes in the porous system of the soil analyzed due to the effect of different management systems. The use of the CT technique and the procedures adopted for microtomographic digital image processing show to be efficient for the micromorphologic characterization of soil porous system. Soil under non-tillage system presented the best results from the agricultural point of view regarding porosity, total number of pores, connectivity and tortuosity in comparison to the conventional tillage. (author)

Confocal pore size measurement based on super-resolution image restoration.

Science.gov (United States)

Liu, Dali; Wang, Yun; Qiu, Lirong; Mao, Xinyue; Zhao, Weiqian

2014-09-01

A confocal pore size measurement based on super-resolution image restoration is proposed to obtain a fast and accurate measurement for submicrometer pore size of nuclear track-etched membranes (NTEMs). This method facilitates the online inspection of the pore size evolution during etching. Combining confocal microscopy with super-resolution image restoration significantly improves the lateral resolution of the NTEM image, yields a reasonable circle edge-setting criterion of 0.2408, and achieves precise pore edge detection. Theoretical analysis shows that the minimum measuring diameter can reach 0.19 μm, and the root mean square of the residuals is only 1.4 nm. Edge response simulation and experiment reveal that the edge response of the proposed method is better than 80 nm. The NTEM pore size measurement results obtained by the proposed method agree well with that obtained by scanning electron microscopy.

Pore Structures in the Biomineralized Byssus of Anomia simplex

DEFF Research Database (Denmark)

Frølich, Simon; Leemreize, Hanna; Thomsen, Jesper Skovhus

2016-01-01

that uses a biomineralized byssus to permanently anchor itself to substrates. The byssus has a highly complex hierarchical structure and contains over 90 wt% CaCO3. The byssus features a complex set of porosities, presumed to be highly important for the function of the attachment system. The pore space...... is the main focus of the present work. We characterize the three dimensional distribution of pore spaces in the byssus using micro-computed tomography (µCT) through a combination of in house CT and high-resolution synchrotron CT. The pore structures are observed to fall into distinct categories in various...

Soil ciliate bioassay for the pore water habitat. A missing link between microflora and earthworm testing in soil toxicity assessment

Energy Technology Data Exchange (ETDEWEB)

Berthold, A. [Lab. for Ecotoxicology, Univ. of Veterinary Medicine, Vienna (Austria); Jakl, T. [Chemicals Policy Unit, Federal Ministry of Agriculture, Forestry, Environment and Water Management, Vienna (Austria)

2002-07-01

Background, Scope and Goal. The chemical, pesticide and biocide legislation of the European Union assembles a variety of bioassays. Among the ecotoxicological tests involved, the testing strategy for the aquatic compartment builds up on three tests reflecting the main trophic levels (algae, Daphnia, fish). For the soil compartment at least one trophic level for a basic food chain is missing, namely between microflora and earthworms. Protozoa are an ideal missing link as they were shown to be the most prominent faunal contributors to nutrient cycling in soil ecosystems and as they represent the lacking first level consumers as well as the highly diverse microfauna. As protozoa inhabit the soil pore water, they can serve as direct indicators for the solved and thus bioavailable portion of xenobiotics. In order to widen the spectrum of available toxicity tests for a meaningful effect assessment for the soil compartment, a test with the soil ciliate Colpoda inflata (Ciliophora, Protozoa), introduced by Pratt et al. (1997), was improved. Methods. The novel improvements comprise a substantially refined inoculation and counting procedure, as well as the adaptation to yeast as a nutritional source. The test was designed to be rapid and easy to perform, in order to have both a higher degree of standardisation and reproducibility, as well as to be in compliance with international test guidelines. Results and Discussion. Five test substances, cadmium chloride, potassium dichromate, acetone, atrazine, and metolachlor, were used in single-compound, static, short-term exposure (24 h, 48 h) tests to examine the effect on the population growth of C. inflata. The median effective concentrations (EC50) were 0.17 to 0.26 mg/l for Cd, 34 to 63 mg/l for Cr, >3000 mg/l for acetone, 91-112 mg/l for atrazine and 83-119 mg/l for metolachlor. The equilibrium partitioning approach was used to extrapolate the results to total soil exposure and thus enable a sensitivity comparison to

An instrument to measure differential pore pressures in deep ocean sediments: Pop-Up-Pore-Pressure-Instrument (PUPPI)

International Nuclear Information System (INIS)

Schultheiss, P.J.; McPhail, S.D.; Packwood, A.R.; Hart, B.

1985-01-01

A Pop-Up-Pore-Pressure-Instrument (PUPPI) has been developed to measure differential pore pressures in sediments. The differential pressure is the pressure above or below normal hydrostatic pressure at the depth of the measurement. It is designed to operate in water depths up to 6000 metres for periods of weeks or months, if required, and measures differential pore pressures at depths of up to 3 metres into the sediments with a resolution of 0.05 kPa. It is a free-fall device with a lance which penetrates the sediments. This lance and the ballast weight is disposed when the PUPPI is acoustically released from the sea floor. When combined with permeability and porosity values of deep-sea sediments the pore pressure measurements made using the PUPPI suggest advection velocities as low as 8.8 mm/yr. The mechanical, electrical and acoustic systems are described together with data obtained from both shallow and deep water trials. (author)

Impact of Matric Potential and Pore Size Distribution on Growth Dynamics of Filamentous and Non-Filamentous Soil Bacteria

NARCIS (Netherlands)

Wolf, A.B.; Vos, de M.; Boer, de W.; Kowalchuk, G.A.

2013-01-01

The filamentous growth form is an important strategy for soil microbes to bridge air-filled pores in unsaturated soils. In particular, fungi perform better than bacteria in soils during drought, a property that has been ascribed to the hyphal growth form of fungi. However, it is unknown if, and to

Impact of matric potential and pore size distribution on growth dynamics of filamentous and non-filamentous soil bacteria

NARCIS (Netherlands)

Wolf, A.B.; Vos, M.; De Boer, W.; Kowalchuk, G.A.

2013-01-01

The filamentous growth form is an important strategy for soil microbes to bridge air-filled pores in unsaturated soils. In particular, fungi perform better than bacteria in soils during drought, a property that has been ascribed to the hyphal growth form of fungi. However, it is unknown if, and to

Error in measuring radon in soil gas by means of passive detectors

International Nuclear Information System (INIS)

Tanner, A.B.

1991-01-01

Passive detection of radon isotopes depends on diffusion of radon atoms from the sites of their generation to the location of the detecting or collecting device. Because some radon decays en route to a passive detector in soil, the radon concentration measured by the detector must be less than the concentration in those soil pores where it is undiminished by diffusion to the detector cavity. The true radon concentration may be significantly underestimated in moist soils. (author)

Visualization of enzyme activities inside earthworm pores

Science.gov (United States)

Hoang, Duyen; Razavi, Bahar S.

2015-04-01

In extremely dynamic microhabitats as bio-pores made by earthworm, the in situ enzyme activities are assumed as a footprint of complex biotic interactions. Our study focused on the effect of earthworm on the enzyme activities inside bio-pores and visualizing the differences between bio-pores and earthworm-free soil by zymography technique (Spohn and Kuzyakov, 2013). For the first time, we aimed at quantitative imaging of enzyme activities in bio-pores. Lumbricus terrestris L. was placed into transparent box (15×20×15cm). After two weeks when bio-pore systems were formed by earthworms, we visualized in situ enzyme activities of five hydrolytic enzymes (β-glucosidase, cellobiohydrolase, chitinase, xylanase, leucine-aminopeptidase, and phosphatase. Zymography showed higher activity of β-glucosidase, chitinase, xylanase and phosphatase in biopores comparing to bulk soil. However, the differences in activity of cellobiohydrolase and leucine aminopeptidase between bio-pore and bulk soil were less pronounced. This demonstrated an applicability of zymography approach to monitor and to distinguish the in situ activity of hydrolytic enzymes in soil biopores.

Structural changes of green roof growing substrate layer studied by X-ray CT

Science.gov (United States)

Jelinkova, Vladimira; Sacha, Jan; Dohnal, Michal; Snehota, Michal

2017-04-01

Increasing interest in green infrastructure linked with newly implemented legislation/rules/laws worldwide opens up research potential for field of soil hydrology. A better understanding of function of engineered soils involved in green infrastructure solutions such as green roofs or rain garden is needed. A soil layer is considered as a highly significant component of the aforesaid systems. In comparison with a natural soil, the engineered soil is assumed to be the more challenging case due to rapid structure changes early stages after its build-up. The green infrastructure efficiency depends on the physical and chemical properties of the soil, which are, in the case of engineered soils, a function of its initial composition and subsequent soil formation processes. The project presented in this paper is focused on fundamental processes in the relatively thick layer of engineered soil. The initial structure development, during which the pore geometry is altered by the growth of plant roots, water influx, solid particles translocation and other soil formation processes, is investigated with the help of noninvasive imaging technique  X-ray computed tomography. The soil development has been studied on undisturbed soil samples taken periodically from green roof test system during early stages of its life cycle. Two approaches and sample sizes were employed. In the first approach, undisturbed samples (volume of about 63 cm3) were taken each time from the test site and scanned by X-ray CT. In the second approach, samples (volume of about 630 cm3) were permanently installed at the test site and has been repeatedly removed to perform X-ray CT imaging. CT-derived macroporosity profiles reveal significant temporal changes of soil structure. Clogging of pores by fine particles and fissures development are two most significant changes that would affect the green roof system efficiency. This work has been supported by the Ministry of Education, Youth and Sports within

The role of pore soil solutions in redistribution of 137Cs, 90Sr, 239,240Pu and 241Am within soil-vegetative cover

International Nuclear Information System (INIS)

Ovsiannikova, S.V.; Sokolik, G.A.; Kilchitskaya, S.L.; Eismont, E.A.; Zhukovich, N.V.; Kimlenko, I.M.

1998-01-01

The role of pore soil solutions in the migration of 137 Cs, 90 Sr, 239,240 Pu and 241 Am within soil-vegetative cover of natural ecosystems was examined. The soil solutions were found to play an important role in the redistribution of 137 Cs, 90 Sr, 239,240 Pu and 241 Am in the soil-plant systems. Obvious relationships between the distribution coefficients of radionuclides between solid and liquid phases (K d ) and the intensity of vertical migration of 137 Cs, 90 Sr, 239,240 Pu and 241 Am along the soil profiles and with intensity of their accumulation by grass vegetation of natural meadows have been obtained. It means that the distribution coefficient may be used as a criterion of the radionuclide mobility in the soil-plant system whatever its level of radioactive contamination is. The influence of the degree of soil moistening, the content of mobile radionuclide forms in the soils and some characteristics of pore soil solutions (pH, content of K + , Ca 2+ , NH 4 + , water soluble organic substances) on the concentration of radionuclide in the soil solutions and on the value of radionuclide distribution coefficient have been analysed. The results of investigation are of great importance in the evaluation of radioecological situation and in solution of problems of radioecological rehabilitation of the contaminated territories. The received data constitute a part of scientific basis for the development of a system of countermeasures to decrease the mobility and biological availability of radionuclides of high and very high radiotoxicity

Unstable Pore-Water Flow in Intertidal Wetlands

Science.gov (United States)

Barry, D. A.; Shen, C.; Li, L.

2014-12-01

Salt marshes are important intertidal wetlands strongly influenced by interactions between surface water and groundwater. Bordered by coastal water, the marsh system undergoes cycles of inundation and exposure driven by the tide. This leads to dynamic, complex pore-water flow and solute transport in the marsh soil. Pore-water circulations occur over vastly different spatial and temporal scales with strong link to the marsh topography. These circulations control solute transport between the marsh soil and the tidal creek, and ultimately affect the overall nutrient exchange between the marsh and coastal water. The pore-water flows also dictate the soil condition, particularly aeration, which influences the marsh plant growth. Numerous studies have been carried out to examine the pore-water flow process in the marsh soil driven by tides, focusing on stable flow with the assumption of homogeneity in soil and fluid properties. This assumption, however, is questionable given the actual inhomogeneous conditions in the field. For example, the salinity of surface water in the tidal creek varies temporally and spatially due to the influence of rainfall and evapotranspiration as well as the freshwater input from upland areas to the estuary, creating density gradients across the marsh surface and within the marsh soil. Many marshes possess soil stratigraphy with low-permeability mud typically overlying high-permeability sandy deposits. Macropores such as crab burrows are commonly distributed in salt marsh sediments. All these conditions are prone to the development of non-uniform, unstable preferential pore-water flow in the marsh soil, for example, funnelling and fingering. Here we present results from laboratory experiments and numerical simulations to explore such unstable flow. In particular, the analysis aims to address how the unstable flow modifies patterns of local pore-water movement and solute transport, as well as the overall exchange between the marsh soil and

Using in situ pore water concentrations to estimate the phytotoxicity of nicosulfuron in soils to corn (Zea mays L.).

Science.gov (United States)

Liu, Kailin; Cao, Zhengya; Pan, Xiong; Yu, Yunlong

2012-08-01

The phytotoxicity of an herbicide in soil is typically dependent on the soil characteristics. To obtain a comparable value of the concentration that inhibits growth by 50% (IC50), 0.01 M CaCl(2) , excess pore water (EPW) and in situ pore water (IPW) were used to extract the bioavailable fraction of nicosulfuron from five different soils to estimate the nicosulfuron phytotoxicity to corn (Zea mays L.). The results indicated that the phytotoxicity of nicosulfuron in soils to corn depended on the soil type, and the IC50 values calculated based on the amended concentration of nicosulfuron ranged from 0.77 to 9.77 mg/kg among the five tested soils. The range of variation in IC50 values for nicosulfuron was smaller when the concentrations of nicosulfuron extracted with 0.01 M CaCl(2) and EPW were used instead of the amended concentration. No significant difference was observed among the IC50 values calculated from the IPW concentrations of nicosulfuron in the five tested soils, suggesting that the concentration of nicosulfuron in IPW could be used to estimate the phytotoxicity of residual nicosulfuron in soils. Copyright © 2012 SETAC.

3D Structure of Tillage Soils

Science.gov (United States)

González-Torre, Iván; Losada, Juan Carlos; Falconer, Ruth; Hapca, Simona; Tarquis, Ana M.

2015-04-01

Soil structure may be defined as the spatial arrangement of soil particles, aggregates and pores. The geometry of each one of these elements, as well as their spatial arrangement, has a great influence on the transport of fluids and solutes through the soil. Fractal/Multifractal methods have been increasingly applied to quantify soil structure thanks to the advances in computer technology (Tarquis et al., 2003). There is no doubt that computed tomography (CT) has provided an alternative for observing intact soil structure. These CT techniques reduce the physical impact to sampling, providing three-dimensional (3D) information and allowing rapid scanning to study sample dynamics in near real-time (Houston et al., 2013a). However, several authors have dedicated attention to the appropriate pore-solid CT threshold (Elliot and Heck, 2007; Houston et al., 2013b) and the better method to estimate the multifractal parameters (Grau et al., 2006; Tarquis et al., 2009). The aim of the present study is to evaluate the effect of the algorithm applied in the multifractal method (box counting and box gliding) and the cube size on the calculation of generalized fractal dimensions (Dq) in grey images without applying any threshold. To this end, soil samples were extracted from different areas plowed with three tools (moldboard, chissel and plow). Soil samples for each of the tillage treatment were packed into polypropylene cylinders of 8 cm diameter and 10 cm high. These were imaged using an mSIMCT at 155keV and 25 mA. An aluminium filter (0.25 mm) was applied to reduce beam hardening and later several corrections where applied during reconstruction. References Elliot, T.R. and Heck, R.J. 2007. A comparison of 2D and 3D thresholding of CT imagery. Can. J. Soil Sci., 87(4), 405-412. Grau, J, Médez, V.; Tarquis, A.M., Saa, A. and Díaz, M.C.. 2006. Comparison of gliding box and box-counting methods in soil image analysis. Geoderma, 134, 349-359. González-Torres, Iván. Theory and

Effects of past copper contamination and soil structure on copper leaching from soil

DEFF Research Database (Denmark)

Paradelo, M; Møldrup, Per; Arthur, Emmanuel

2013-01-01

Copper contamination affects biological, chemical, and physical soil properties and associated ecological functions. Changes in soil pore organization as a result of Cu contamination can dramatically affect flow and contaminant transport in polluted soils. This study assessed the influence of soil...... structure on the movement of water and Cu in a long-term polluted soil. Undisturbed soil cores collected along a Cu gradient (from about 20 to about 3800 mg Cu kg−1 soil) were scanned using X-ray computed tomography (CT). Leaching experiments were performed to analyze tracer transport, colloid leaching......, and dissolved organic carbon (DOC) and Cu losses. The 5% arrival time (t0.05) and apparent dispersivity (λapp) for tracer breakthrough were calculated by fitting the experimental data to a nonparametric, double-lognormal probability density function. Soil bulk density, which did not follow the Cu gradient...

Emerging organic pollutants in the vadose zone of a soil aquifer treatment system: Pore water extraction using positive displacement.

Science.gov (United States)

Sopilniak, Alexander; Elkayam, Roy; Rossin, Anna Voloshenko; Lev, Ovadia

2018-01-01

Trace organic compounds in effluents, water streams and aquifers are amply reported. However, the mobile pool of Emerging Organic Contaminants (EOCs) in the deep parts of the vadose zone is hard to estimate, due to difficulties in extraction of sufficient quantity of pore water. Here, we present a new methodology for depth profiling of EOCs in pore water by Positive Displacement Extraction (PDE): Pore water extraction from unsaturated soil samples is carried out by withdrawal of soil cores by direct-push drilling and infiltrating the core by organics free water. We show that EOC concentrations in the water eluted in the plateau region of the inverse breakthrough curve is equal to their pore water concentrations. The method was previously validated for DOC extraction, and here the scope of the methodology is extended to pore water extraction for organic pollutants analysis. Method characteristics and validation were carried out with atrazine, simazine, carbamazepine, venlafaxine, O-desmethylvenlafaxine and caffeine in the concentration range of several ng to several μg/liter. Validation was carried out by laboratory experiments on three different soils (sandy, sandy-clayey and clayey). Field studies in the vadose zone of a SAT system provided 27 m deep EOC profiles with less than 1.5 m spatial resolution. During the percolation treatment, carbamazepine remained persistent, while the other studied EOCs were attenuated to the extent of 50-99%.The highest degradation rate of all studied EOCs was in the aerobic zone. EOC levels based on PDE and extraction by centrifugation were compared, showing a positive bias for centrifugation. Copyright © 2017 Elsevier Ltd. All rights reserved.

Comparison of pore water samplers and cryogenic distillation under laboratory and field conditions for soil water stable isotope analysis.

Science.gov (United States)

Thoma, Michael; Frentress, Jay; Tagliavini, Massimo; Scandellari, Francesca

2018-02-15

We used pore water samplers (PWS) to sample for isotope analysis (1) only water, (2) soil under laboratory conditions, and (3) soil in the field comparing the results with cryogenic extraction (CE). In (1) and (2), no significant differences between source and water extracted with PWS were detected with a mean absolute difference (MAD) always lower than 2 ‰ for δ 2 H and 1 ‰ for δ 18 O. In (2), CE water was more enriched than PWS-extracted water, with a MAD respect to source water of roughly 8 ‰ for δ 2 H and 4 ‰ for δ 18 O. In (3), PWS water was enriched relative to CE water by 3 ‰ for δ 2 H and 0.9 ‰ for δ 18 O. The latter result may be due to the distinct water portions sampled by the two methods. Large pores, easily sampled by PWS, likely retain recent, and enriched, summer precipitation while small pores, only sampled by CE, possibly retain isotopically depleted water from previous winter precipitation or irrigation inputs. Accuracy and precision were greater for PWS relative to CE. PWS is therefore suggested as viable tool to extract soil water for stable isotope analysis, particularly for soils used in this study (sandy and silty loams).

Soil structure restoration by wet/dry cycles assessed by computed tomography

Energy Technology Data Exchange (ETDEWEB)

Pires, L.F. [Univ. of Sao Paulo, Center for Nuclear Energy in Agriculture, Piracicaba, Sao Paulo (Brazil)

2005-07-01

Some studies have shown that soil structures can be restored through the sequence of wetting and drying cycles. These cycles causes changes in the soil pore system, which is very important to agriculture, because directly affect plant growth by root penetration, retention and movement of water and gases. The aim of this study was to follow by gamma-ray computed tomography (CT) the effect of soil wetting/drying process on the soil structure repairing of samples collected in cylinders. A first-generation tomograph with an {sup 241}Am source and a 7.62 x 7.62 cm NaI(Tl) scintillation crystal detector coupled to a photomultiplier tube was employed. Image analysis and tomographic unit profiles show that CT can provide an insight to sample structure restoration, which helps to have a better comprehension of soil physical hydraulic phenomena. (author)

Soil structure restoration by wet/dry cycles assessed by computed tomography

International Nuclear Information System (INIS)

Pires, L.F.

2005-01-01

Some studies have shown that soil structures can be restored through the sequence of wetting and drying cycles. These cycles causes changes in the soil pore system, which is very important to agriculture, because directly affect plant growth by root penetration, retention and movement of water and gases. The aim of this study was to follow by gamma-ray computed tomography (CT) the effect of soil wetting/drying process on the soil structure repairing of samples collected in cylinders. A first-generation tomograph with an 241 Am source and a 7.62 x 7.62 cm NaI(Tl) scintillation crystal detector coupled to a photomultiplier tube was employed. Image analysis and tomographic unit profiles show that CT can provide an insight to sample structure restoration, which helps to have a better comprehension of soil physical hydraulic phenomena. (author)

Numerical study on the influence of entrapped air bubbles on the time-dependent pore pressure distribution in soils due to external changes in water level

Directory of Open Access Journals (Sweden)

Ausweger Georg M.

2016-01-01

Full Text Available In practical geotechnical engineering soils below the groundwater table are usually regarded as a two-phase medium, consisting of solids and water. The pore water is assumed to be incompressible. However, under certain conditions soils below the groundwater table may exhibit a liquid phase consisting of water and air. The air occurs in form of entrapped air bubbles and dissolved air. Such conditions are named quasi-saturated and the assumption of incompressibility is no longer justified. In addition the entrapped air bubbles influence the hydraulic conductivity of soils. These effects are usually neglected in standard problems of geotechnical engineering. However, sometimes it is required to include the pore fluid compressibility when modelling the hydraulic behaviour of soils in order to be able to explain certain phenomena observed in the field. This is for example true for fast fluctuating water levels in reservoirs. In order to study these phenomena, numerical investigations on the influence of the pore fluid compressibility on the pore water pressure changes in a soil layer beneath a reservoir with fast fluctuating water levels were performed. Preliminary results of this study are presented and it could be shown that numerical analysis and field data are in good agreement.

Revealing Soil Structure and Functional Macroporosity along a Clay Gradient Using X-ray Computed Tomography

DEFF Research Database (Denmark)

Naveed, Muhammad; Møldrup, Per; Arthur, Emmanuel

2013-01-01

clay content, respectively) at a field site in Lerbjerg, Denmark. The water-holding capacity of soils markedly increased with increasing soil clay content, while significantly higher air permeability was observed for the L1 to L3 soils than for the L4 to L6 soils. Higher air permeability values......The influence of clay content in soil-pore structure development and the relative importance of macroporosity in governing convective fluid flow are two key challenges toward better understanding and quantifying soil ecosystem functions. In this study, soil physical measurements (soil-water...... retention and air permeability) and x-ray computed tomography (CT) scanning were combined and used from two scales on intact soil columns (100 and 580 cm3). The columns were sampled along a natural clay gradient at six locations (L1, L2, L3, L4, L5 and L6 with 0.11, 0.16, 0.21, 0.32, 0.38 and 0.46 kg kg−1...

Microtomography and pore-scale modeling of two-phase Fluid Distribution

Energy Technology Data Exchange (ETDEWEB)

Silin, D.; Tomutsa, L.; Benson, S.; Patzek, T.

2010-10-19

Synchrotron-based X-ray microtomography (micro CT) at the Advanced Light Source (ALS) line 8.3.2 at the Lawrence Berkeley National Laboratory produces three-dimensional micron-scale-resolution digital images of the pore space of the reservoir rock along with the spacial distribution of the fluids. Pore-scale visualization of carbon dioxide flooding experiments performed at a reservoir pressure demonstrates that the injected gas fills some pores and pore clusters, and entirely bypasses the others. Using 3D digital images of the pore space as input data, the method of maximal inscribed spheres (MIS) predicts two-phase fluid distribution in capillary equilibrium. Verification against the tomography images shows a good agreement between the computed fluid distribution in the pores and the experimental data. The model-predicted capillary pressure curves and tomography-based porosimetry distributions compared favorably with the mercury injection data. Thus, micro CT in combination with modeling based on the MIS is a viable approach to study the pore-scale mechanisms of CO{sub 2} injection into an aquifer, as well as more general multi-phase flows.

Soil physical and X-ray computed tomographic measurements to investigate small-scale structural differences under strip tillage compared to mulch till and no-till

Science.gov (United States)

Pöhlitz, Julia; Rücknagel, Jan; Schlüter, Steffen; Vogel, Hans-Jörg

2017-04-01

In recent years there has been an increasing application of conservation tillage techniques where the soil is no longer turned, but only loosened or left completely untilled. Dead plant material remains on the soil surface, which provides environmental and economic benefits such as the conservation of water, preventing soil erosion and saving time during seedbed preparation. There is a variety of conservation tillage systems, e.g. mulch till, no-till and strip tillage, which is a special feature. In strip tillage, the seed bed is divided into a seed zone (strip-till within the seed row: STWS) and a soil management zone (strip-till between the seed row: STBS). However, each tillage application affects physical soil properties and processes. Here, the combined application of classical soil mechanical and computed tomographic methods is used on a Chernozem (texture 0-30 cm: silt loam) to show small-scale structural differences under strip tillage (STWS, STBS) compared to no-till (NT) and mulch till (MT). In addition to the classical soil physical parameters dry bulk density and saturated conductivity (years: 2012, 2014, 2015) at soil depths 2-8 and 12-18 cm, stress-strain tests were carried out to map mechanical behavior. The stress-strain tests were performed for a load range from 5-550 kPa at 12-18 cm depth (year 2015). Mechanical precompression stress was determined on the stress-dry bulk density curves. Further, CT image cross sections and computed tomographic examinations (average pore size, porosity, connectivity, and anisotropy) were used from the same soil samples. For STBS and NT, a significant increase in dry bulk density was observed over the course of time compared to STWS and MT, which was more pronounced at 2-8 cm than at 12-18 cm depth. Despite higher dry bulk density, STBS displayed higher saturated conductivity in contrast to STWS, which can be attributed to higher earthworm abundance. In strip tillage, structural differences were identified

A Comparison of Soil-Water Sampling Techniques

Science.gov (United States)

Tindall, J. A.; Figueroa-Johnson, M.; Friedel, M. J.

2007-12-01

The representativeness of soil pore water extracted by suction lysimeters in ground-water monitoring studies is a problem that often confounds interpretation of measured data. Current soil water sampling techniques cannot identify the soil volume from which a pore water sample is extracted, neither macroscopic, microscopic, or preferential flowpath. This research was undertaken to compare values of extracted suction lysimeters samples from intact soil cores with samples obtained by the direct extraction methods to determine what portion of soil pore water is sampled by each method. Intact soil cores (30 centimeter (cm) diameter by 40 cm height) were extracted from two different sites - a sandy soil near Altamonte Springs, Florida and a clayey soil near Centralia in Boone County, Missouri. Isotopically labeled water (O18? - analyzed by mass spectrometry) and bromide concentrations (KBr- - measured using ion chromatography) from water samples taken by suction lysimeters was compared with samples obtained by direct extraction methods of centrifugation and azeotropic distillation. Water samples collected by direct extraction were about 0.25 ? more negative (depleted) than that collected by suction lysimeter values from a sandy soil and about 2-7 ? more negative from a well structured clayey soil. Results indicate that the majority of soil water in well-structured soil is strongly bound to soil grain surfaces and is not easily sampled by suction lysimeters. In cases where a sufficient volume of water has passed through the soil profile and displaced previous pore water, suction lysimeters will collect a representative sample of soil pore water from the sampled depth interval. It is suggested that for stable isotope studies monitoring precipitation and soil water, suction lysimeter should be installed at shallow depths (10 cm). Samples should also be coordinated with precipitation events. The data also indicate that each extraction method be use to sample a different

Measuring kinetic drivers of pneumolysin pore structure.

Science.gov (United States)

Gilbert, Robert J C; Sonnen, Andreas F-P

2016-05-01

Most membrane attack complex-perforin/cholesterol-dependent cytolysin (MACPF/CDC) proteins are thought to form pores in target membranes by assembling into pre-pore oligomers before undergoing a pre-pore to pore transition. Assembly during pore formation is into both full rings of subunits and incomplete rings (arcs). The balance between arcs and full rings is determined by a mechanism dependent on protein concentration in which arc pores arise due to kinetic trapping of the pre-pore forms by the depletion of free protein subunits during oligomerization. Here we describe the use of a kinetic assay to study pore formation in red blood cells by the MACPF/CDC pneumolysin from Streptococcus pneumoniae. We show that cell lysis displays two kinds of dependence on protein concentration. At lower concentrations, it is dependent on the pre-pore to pore transition of arc oligomers, which we show to be a cooperative process. At higher concentrations, it is dependent on the amount of pneumolysin bound to the membrane and reflects the affinity of the protein for its receptor, cholesterol. A lag occurs before cell lysis begins; this is dependent on oligomerization of pneumolysin. Kinetic dissection of cell lysis by pneumolysin demonstrates the capacity of MACPF/CDCs to generate pore-forming oligomeric structures of variable size with, most likely, different functional roles in biology.

Determination of degradation rates of organic substances in the unsaturated soil zone depending on the grain size fractions of various soil types

Science.gov (United States)

Fichtner, Thomas; Stefan, Catalin; Goersmeyer, Nora

2015-04-01

Rate and extent of the biological degradation of organic substances during transport through the unsaturated soil zone is decisively influenced by the chemical and physical properties of the pollutants such as water solubility, toxicity and molecular structure. Furthermore microbial degradation processes are also influenced by soil-specific properties. An important parameter is the soil grain size distribution on which the pore volume and the pore size depends. Changes lead to changes in air and water circulation as well as preferred flow paths. Transport capacity of water inclusive nutrients is lower in existing bad-drainable fine pores in soils with small grain size fractions than in well-drainable coarse pores in a soil with bigger grain size fractions. Because fine pores are saturated with water for a longer time than the coarse pores and oxygen diffusion in water is ten thousand times slower than in air, oxygen is replenished much slower in soils with small grain size fractions. As a result life and growth conditions of the microorganisms are negatively affected. This leads to less biological activity, restricted degradation/mineralization of pollutants or altered microbial processes. The aim of conducted laboratory column experiments was to study the correlation between the grain size fractions respectively pore sizes, the oxygen content and the biodegradation rate of infiltrated organic substances. Therefore two columns (active + sterile control) were filled with different grain size fractions (0,063-0,125 mm, 0,2-0,63 mm and 1-2 mm) of soils. The sterile soil was inoculated with a defined amount of a special bacteria culture (sphingobium yanoikuae). A solution with organic substances glucose, oxalic acid, sinaphylic alcohol and nutrients was infiltrated from the top in intervals. The degradation of organic substances was controlled by the measurement of dissolved organic carbon in the in- and outflow of the column. The control of different pore volumes

Measurement of the open porosity of agricultural soils with acoustic waves

Science.gov (United States)

Luong, Jeanne; Mercatoris, Benoit; Destain, Marie-France

2015-04-01

soil, since there are more voids filled with air and water, increasing the viscous losses. Fellah et al. (2003) showed that porosity can be determined from phase speed and reflection coefficient. The propagation of acoustic waves in soil is investigated to develop a rapid method for the quantification of the porosity level of agricultural soils. In the present contribution, correlations are determined between the acoustic signatures of agricultural soil in function of its structural properties. In laboratory, compression tests are performed on unsaturated soil samples to reproduce different porosity levels. Ultrasonic pulses are sent through the considered samples. The propagated signals are treated in both time and frequency domains in order to determine the speed of the phase velocity and the reflection. Porosity is then determined and compared with water content measured by gravimetric method. Alaoui, A., Lipiec, J. & Gerke, H.H., 2011. A review of the changes in the soil pore system due to soil deformation: A hydrodynamic perspective. Soil and Tillage Research, 115-116, pp.1-15. Fellah Z.E.A., Berger S., Lauriks W., Depollier C., Aristegui C., Chapelon J.Y., 2003. Measuring the porosity and the tortuosity of porous materials via reflected waves at oblique incidence. The Journal of the Acoustical Society of America 113 (5), pp 2424-2433 Hamza, M.A. & Anderson, W.K., 2005. Soil compaction in cropping systems. Soil and Tillage Research, 82(2), pp.121-145. Lu, Z., 2005. Role of hysteresis in propagating acousitcs waves in soils. Geophysical Research Letter, pp.32:1-4. Lu, Z., Hickey, C.J. & Sabatier, J.M., 2004. Effects of compaction on the acoustic velocity in soils. Soil Science Society of America Journal, 68(1), pp.7-16. Lu, Z. & Sabatier, J.M., 2009. Effects of soil water potential and moisture content on sound speed. Soil Science Society of America Journal, 73(5), pp.1614-1625. Le Maitre, D.C., Kotzee, I.M. & O'Farrell, P.J., 2014. Impacts of land-cover change on

Predicting Soil-Water Characteristics from Volumetric Contents of Pore-Size Analogue Particle Fractions

DEFF Research Database (Denmark)

Naveed, Muhammad; Møldrup, Per; Tuller, Markus

*-model) for the SWC, derived from readily available soil properties such as texture and bulk density. A total of 46 soils from different horizons at 15 locations across Denmark were used for models evaluation. The Xw-model predicts the volumetric water content as a function of volumetric fines content (organic matter...... and clay). It performed reasonably well for the dry-end (above a pF value of 2.0; pF = log(|Ψ|), where Ψ is the matric potential in cm), but did not do as well closer to saturated conditions. The Xw*-model gives the volumetric water content as a function of volumetric content of particle size fractions...... (organic matter, clay, silt, fine and coarse sand), variably included in the model depending on the pF value. The volumetric content of a particular soil particle size fraction was included in the model if it was assumed to contribute to the pore size fraction still occupied with water at the given p...

Impact of S fertilizers on pore-water Cu dynamics and transformation in a contaminated paddy soil with various flooding periods.

Science.gov (United States)

Yang, Jianjun; Zhu, Shenhai; Zheng, Cuiqing; Sun, Lijuan; Liu, Jin; Shi, Jiyan

2015-04-09

Impact of S fertilization on Cu mobility and transformation in contaminated paddy soils has been little reported. In this study, we investigated the dynamics and transformation of dissolved and colloidal Cu in the pore water of a contaminated paddy soil after applying ammonium sulphate (AS) and sulfur coated urea (SCU) with various flooding periods (1, 7 and 60 days). Compared to the control soil, the AS-treated soil released more colloidal and dissolved Cu over the entire flooding period, while the SCU-treated soil had lower colloidal Cu after 7-day flooding but higher colloidal and dissolved Cu after 60-day flooding. Microscopic X-ray fluorescence (μ-XRF) analysis found a close relationship between Fe and Cu distribution on soil colloids after 60-day flooding, implying the formation of colloidal Fe/Cu sulphide coprecipitates. Cu K-edge X-ray absorption near-edge structure (XANES) spectroscopy directly revealed the transformation of outer-sphere complexed Cu(II) species to Cu(II) sulphide and reduced Cu2O in the colloids of S-treated soils after 60-day flooding. These results demonstrated the great influence of S fertilization on pore-water Cu mobility by forming Cu sulphide under flooding conditions, which facilitated our understanding and control of Cu loss in contaminated paddy soils under S fertilization. Copyright © 2015 Elsevier B.V. All rights reserved.

Seasonal and Downslope Changes in the Pore Water Geochemistry of Tundra Soils Near Nome, Alaska

Science.gov (United States)

Philben, M. J.; Zheng, J.; Wullschleger, S. D.; Graham, D. E.; Gu, B.

2017-12-01

Thawing permafrost is exposing vast stores of organic matter to decomposition in previously frozen tundra soils. In low-relief and poorly drained areas, the complexity of microbial metabolism under anaerobic conditions complicates the prediction of resulting CO2 and CH4 emissions. To improve this understanding, we investigated the dissolved gas and major ion concentrations and DOM composition in depth profiles of soil pore water collected from the Teller Road site near Nome, AK, as part of the Next Generation Ecosystem Experiment (NGEE)-Arctic. Pathways of anaerobic organic matter degradation were inferred based on two complementary approaches: first, we compared the composition of soil pore waters of saturated areas in the peat plateau and the base of the hillslope, collected early and late in the thaw season (July and September) to assess seasonal changes in the soil solution chemistry. CH4 and low molecular weight organic acids (e.g., acetate, formate, and propionate) were both near or below the detection limit in July but accumulated later in the season. In contrast, SO42- and Fe(III) concentrations were high in July and low in September, while Fe(II) was higher in September. These results suggest SO42- and Fe(III) reduction were the primary pathways for anaerobic respiration early in the thaw season, while methanogenesis increased in September as labile organic acids accumulated. Second, we assessed the change in DOM composition in a transect of piezometers, capturing the degradation of organic matter during transport down a hillslope. The DOC concentration did not change, but SUVA254 declined and the organic acid concentration increased downslope. In addition, Fourier-transform infrared spectroscopy indicated the ratio of carboxyl to amide and aromatic functional groups increased downslope. These parameters show that although there was no net loss of DOC along the transect, it was transformed to less aromatic and potentially more labile forms. Together, these

Individual pore and interconnection size analysis of macroporous ceramic scaffolds using high-resolution X-ray tomography

Energy Technology Data Exchange (ETDEWEB)

Jerban, Saeed, E-mail: saeed.jerban@usherbrooke.ca; Elkoun, Saïd, E-mail: Said.Elkoun@usherbrooke.ca

2016-08-15

The pore interconnection size of β-tricalcium phosphate scaffolds plays an essential role in the bone repair process. Although, the μCT technique is widely used in the biomaterial community, it is rarely used to measure the interconnection size because of the lack of algorithms. In addition, discrete nature of the μCT introduces large systematic errors due to the convex geometry of interconnections. We proposed, verified and validated a novel pore-level algorithm to accurately characterize the individual pores and interconnections. Specifically, pores and interconnections were isolated, labeled, and individually analyzed with high accuracy. The technique was verified thoroughly by visually inspecting and verifying over 3474 properties of randomly selected pores. This extensive verification process has passed a one-percent accuracy criterion. Scanning errors inherent in the discretization, which lead to both dummy and significantly overestimated interconnections, have been examined using computer-based simulations and additional high-resolution scanning. Then accurate correction charts were developed and used to reduce the scanning errors. Only after the corrections, both the μCT and SEM-based results converged, and the novel algorithm was validated. Material scientists with access to all geometrical properties of individual pores and interconnections, using the novel algorithm, will have a more-detailed and accurate description of the substitute architecture and a potentially deeper understanding of the link between the geometric and biological interaction. - Highlights: •An algorithm is developed to analyze individually all pores and interconnections. •After pore isolating, the discretization errors in interconnections were corrected. •Dummy interconnections and overestimated sizes were due to thin material walls. •The isolating algorithm was verified through visual inspection (99% accurate). •After correcting for the systematic errors, algorithm was

In Situ Local Contact Angle Measurement in a CO2-Brine-Sand System Using Microfocused X-ray CT.

Science.gov (United States)

Lv, Pengfei; Liu, Yu; Wang, Zhe; Liu, Shuyang; Jiang, Lanlan; Chen, Junlin; Song, Yongchen

2017-04-11

The wettability of porous media is of major interest in a broad range of natural and engineering applications. The wettability of a fluid on a solid surface is usually evaluated by the contact angle between them. While in situ local contact angle measurements are complicated by the topology of porous media, which can make it difficult to use traditional methods, recent advances in microfocused X-ray computed tomography (micro-CT) and image processing techniques have made it possible to measure contact angles on the scale of the pore sizes in such media. However, the effects of ionic strength, CO 2 phase, and flow pattern (drainage or imbibition) on pore-scale contact angle distribution are still not clear and have not been reported in detail in previous studies. In this study, we employed a micro-CT scanner for in situ investigation of local contact angles in a CO 2 -brine-sand system under various conditions. The effects of ionic strength, CO 2 phase, and flow pattern on the local contact-angle distribution were examined in detail. The results showed that the local contact angles vary over a wide range as a result of the interaction of surface contaminants, roughness, pore topology, and capillarity. The wettability of a porous surface could thus slowly weaken with increasing ionic strength, and the average contact angle could significantly increase when gaseous CO 2 (gCO 2 ) turns into supercritical CO 2 (scCO 2 ). Contact angle hysteresis also occurred between drainage and imbibition procedures, and the hysteresis was more significant under gCO 2 condition.

Assessing Tillage Effects on Soil Hydraulic Properties via Inverse Parameter Estimation using Tension Infiltrometry

Science.gov (United States)

Schwen, Andreas; Bodner, Gernot; Loiskandl, Willibald

2010-05-01

Hydraulic properties are key factors controlling water and solute movement in soils. While several recent studies have focused on the assessment of the spatial variability of hydraulic properties, the temporal dynamics are commonly not taken into account, primarily because its measurement is costly and time-consuming. However, there is extensive empirical evidence that these properties are subject to temporal changes, particularly in the near-saturated range where soil structure strongly influences water flow. One main source of temporal variability is soil tillage. It can improve macroporosity by loosening the soil and thereby changing the pore-size distribution. Since these modifications are quite unstable over time, the pore space partially collapses after tillage. This effect should be largest for conventional tillage (CT), where the soil is ploughed after harvest every year. Assessing the effect of different tillage treatments on the temporal variability of hydraulic properties requires adequate measurement techniques. Tension infiltrometry has become a popular and convenient method providing not only the hydraulic conductivity function but also the soil rentention properties. The inverse estimation of parameters from infiltration measurements remains challenging, despite some progress since the first approach of Šimůnek et al. (1998). Measured data like the cumulative infiltration, the initial and final volumetric water content, as well as independently measured retention data from soil core analysis with laboratory methods, have to be considered to find an optimum solution describing the soil's pore space. In the present study we analysed tension infiltration measurements obtained several times between August 2008 and December 2009 on an arable field in the Moravian Basin, Lower Austria. The tillage treatments were conventional tillage including ploughing (CT), reduced tillage with chisel only (RT), and no-tillage treatment using a direct seeding

Factors impacting the electro conductivity variations of clayey soils

International Nuclear Information System (INIS)

Ouhadi, V. R.; Goodarzi, A. R.

2007-01-01

The variation of pore fluid properties in soil has a major effect on soil behaviour. This effect is a function of pore fluid properties and soil mineralogy. Such variation usually happens in the reservoirs of dams or in some geotechnical projects. The electro conductivity measurement is a simple method to monitor any variation in the pore fluid of soils. electro conductivity is the ability of a material to transmit (conduct) an electrical current. This paper focuses attention on the effect of soil-pore fluid interaction on the electro conductivity of clayey soils. A set of physico-chemical experiments are performed and the role of different factors including soil pH, soil mineralogy, soil: water ratio, cation and anion effects are investigated. The results of this study indicate that for soil that has a relatively low CEC, the anion type is an important factor, while the cation type does not noticeably affect the electro conductivity of the soil-solution. However, for such soil, an electrolyte property, i.e. its solubility, is much more effective than the CEC of the soil. In addition, it was observed that in the presence of neutral salts such as pore fluid, the pH of the soil-solution decreases causing an increase in the electro conductivity of the soil sample

Soil atmosphere exchange of carbonyl sulfide (COS regulated by diffusivity depending on water-filled pore space

Directory of Open Access Journals (Sweden)

H. Van Diest

2008-04-01

Full Text Available The exchange of carbonyl sulfide (COS between soil and the atmosphere was investigated for three arable soils from Germany, China and Finland and one forest soil from Siberia for parameterization in the relation to ambient carbonyl sulfide (COS concentration, soil water content (WC and air temperature. All investigated soils acted as sinks for COS. A clear and distinct uptake optimum was found for the German, Chinese, Finnish and Siberian soils at 11.5%, 9%, 11.5%, and 9% soil WC, respectively, indicating that the soil WC acts as an important biological and physical parameter for characterizing the exchange of COS between soils and the atmosphere. Different optima of deposition velocities (V_d as observed for the Chinese, Finnish and Siberian boreal soil types in relation to their soil WC, aligned at 19% in relation to the water-filled pore space (WFPS, indicating the dominating role of gas diffusion. This interpretation was supported by the linear correlation between V_d and bulk density. We suggest that the uptake of COS depends on the diffusivity dominated by WFPS, a parameter depending on soil WC, soil structure and porosity of the soil.

Quantitative dual energy CT measurements in rabbit VX2 liver tumors: Comparison to perfusion CT measurements and histopathological findings

International Nuclear Information System (INIS)

Zhang, Long Jiang; Wu, Shengyong; Wang, Mei; Lu, Li; Chen, Bo; Jin, Lixin; Wang, Jiandong; Larson, Andrew C.; Lu, Guang Ming

2012-01-01

Purpose: To evaluate the correlation between quantitative dual energy CT and perfusion CT measurements in rabbit VX2 liver tumors. Materials and methods: This study was approved by the institutional animal care and use committee at our institution. Nine rabbits with VX2 liver tumors underwent contrast-enhanced dual energy CT and perfusion CT. CT attenuation for the tumors and normal liver parenchyma and tumor-to-liver ratio were obtained at the 140 kVp, 80 kVp, average weighted images and dual energy CT iodine maps. Quantitative parameters for the viable tumor and adjacent liver were measured with perfusion CT. The correlation between the enhancement values of the tumor in iodine maps and perfusion CT parameters of each tumor was analyzed. Radiation dose from dual energy CT and perfusion CT was measured. Results: Enhancement values for the tumor were higher than that for normal liver parenchyma at the hepatic arterial phase (P < 0.05). The highest tumor-to-liver ratio was obtained in hepatic arterial phase iodine map. Hepatic blood flow of the tumor was higher than that for adjacent liver (P < 0.05). Enhancement values of hepatic tumors in the iodine maps positively correlated with permeability of capillary vessel surface (r = 0.913, P < 0.001), hepatic blood flow (r = 0.512, P = 0.010), and hepatic blood volume (r = 0.464, P = 0.022) at the hepatic arterial phases. The effective radiation dose from perfusion CT was higher than that from DECT (P < 0.001). Conclusions: The enhancement values for viable tumor tissues measured in iodine maps were well correlated to perfusion CT measurements in rabbit VX2 liver tumors. Compared with perfusion CT, dual energy CT of the liver required a lower radiation dose.

Quantification of Soil Physical Properties by Using X-Ray Computerized Tomography (CT) and Standard Laboratory (STD) Methods

Energy Technology Data Exchange (ETDEWEB)

Sanchez, Maria Ambert [Iowa State Univ., Ames, IA (United States)

2003-12-12

profile for both laboratory methods. The K{sub s} measurements and CDE parameters revealed no significant differences between tillages and treatments. In essence, the CT method and CDE model both proved to be useful methods to quantify macropores and estimate solute transport parameters, respectively. Breakthrough curves were generated to observe the initial and final breakthrough of solute response along the soil matrix.

Pore-water chemistry effects on the compressibility behaviour of Boom Clay

International Nuclear Information System (INIS)

Deng, Y.F.; Cui, Y.J.; Tang, A.M.; Nguyen, X.P.; Li, X.L.; Maarten, V.G.

2010-01-01

Document available in extended abstract form only. Boom clay is a thick deposit of over-consolidated marine clay, and belongs to the Oligocene series. Its hydraulic conductivity has been investigated since many years in Belgium within the site characterization program related to the performance assessment of potential geological disposal of high-level radioactive waste in this formation. Recently, the work of Wemaere et al. (2008) shows a significant variability of the hydraulic conductivity of the Boom clay. Indeed, they performed measurements on soil cores taken from four distant boreholes at various depths. The vertical hydraulic conductivity was found to vary from 3 x 10 -12 to 10 x 10 -12 m/s. It is suspected that this variability would be partly related to the water chemistry effects. Indeed, De Craen et al. (2006) shows that the pore-water chemical composition of soil cores taken from the Essen site is significantly different from that at the Mol site. If the pore water chemistry has strong effect on the hydraulic conductivity, its effect on the mechanical behaviour needs to be investigated too. The aim of this paper is to verify whether there are significant effects of pore-water chemistry on the soil compressibility. This study would be helpful to transpose the knowledge obtained from the Mol site to other sites of Boom clay formation where the geochemical components are different from the former site, as the hydro-mechanical characteristics of Boom clay at the Mol site has been widely investigated since the last decades. Two soil cores were taken from the Essen site at a depth of 227 m (Ess83) and 240 m (Ess96). Based on the geochemical analysis presented by De Craen et al. (2006), synthetic water having similar chemical composition of the in-situ pore-water was prepared. The identification geotechnical characteristics of these cores are shown in Table 2. It can be observed that the clay content (particle size < 2 μm) is relatively high (more than 50

Pore structure characteristics after two years biochar application to a sandy loam field

DEFF Research Database (Denmark)

Sun, Zhencai; Arthur, Emmanuel; de Jonge, Lis Wollesen

2015-01-01

the effects of birch wood biochar (20, 40, and 100 Mg ha−1) applied to a sandy loam on soil total porosity and pore structure indices. Bulk and intact soil samples were collected for physicochemical analyses and water retention and gas diffusivity measurements between pF 1.0 and pF 3.0. Biochar application...

Optimal Pile Arrangement for Minimizing Excess Pore Water Pressure Build-Up

DEFF Research Database (Denmark)

Barari, Amin; Saadati, Meysam; Ibsen, Lars Bo

2013-01-01

Numerical analysis of pile group in a liquefiable soil was considered to investigate the influence of pile spacing on excess pore pressure distribution and liquefaction potential. The analysis is conducted using a two-dimensional plain strain finite difference program considering a nonlinear...... constitutive model for sandy soil, strength and stiffness reduction, and pile-soil interaction. The Mohr-Coulomb constitutive model coupled with Byrne pore pressure build-up model have been employed in the analysis. Numerical analysis results show that pile groups have significant influence on the dynamic...... response of sandy soil as they reduce the amount of excess pore pressure development during seismic shaking and may even prevent liquefaction....

Temporal dynamics for soil aggregates determined using X-ray CT scanning

DEFF Research Database (Denmark)

Garbout, Amin; Munkholm, Lars Juhl; Hansen, Søren Baarsgaard

2013-01-01

Soil structure plays a key role in the ability of soil to fulfil essential soil functions and services in relation to e.g. root growth, gas and water transport and organic matter turnover. However, soils are not a very easy object to study as they are highly complex and opaque to the human eye...... aggregate properties such as volume, surface area and sphericity based on 3D images. We tested the methods on aggregates from different treatments and quantified changes over time. A total of 32 collections of aggregates, enclosed in mesocosms, were incubated in soil to follow the structural changes over....... Traditionally, they have been studied using invasive or destructive techniques. The advantage of using X-ray computed tomography (CT) in soil morphology is that it enables non-destructive quantification of soil structure in three dimensions (3D). The prime objective of the present study was to characterize soil...

Linking particle and pore-size distribution parameters to soil gas transport properties

DEFF Research Database (Denmark)

Arthur, Emmanuel; Møldrup, Per; Schjønning, Per

2012-01-01

, respectively) and the Campbell water retention parameter b were used to characterize particle and pore size distributions, respectively. Campbell b yielded a wide interval (4.6–26.2) and was highly correlated with α, β, and volumetric clay content. Both Dp/Do and ka followed simple power-law functions (PLFs......) of air-filled porosity (εa). The PLF tortuosity–connectivity factors (X*) for Dp/Do and ka were both highly correlated with all basic soil characteristics, in the order of volumetric clay content = Campbell b > gravimetric clay content > α > β. The PLF water blockage factors (H) for Dp/Do and ka were...... also well (but relatively more weakly) correlated with the basic soil characteristics, again with the best correlations to volumetric clay content and b. As a first attempt at developing a simple Dp/Do model useful at the field scale, we extended the classical Buckingham Dp/Do model (εa2) by a scaling...

Measurement of structured purple soil porosity by using gamma ray transmission technique

International Nuclear Information System (INIS)

Costa, Elizabeth Cristina S. da; Rocha, Wilson Roberto Dejato da; Oliveira, Ricardo M. de; Silva, Luzeli Moreira da; Moreira, Anderson Camargo; Portezan, Otaio Portezan; Appoloni, Carlos Roberto; Coimbra, Melayne Martins

2002-01-01

The soil structure defines the particle arrangement which in turn largely determines the pore size distribution. In this work, we present the measurements of total, macro and microporosity for TRe soil with clayey texture. Soil samples were collected from a trench located at University of Londrina. The deformed and undeformed soil samples were collected from soil surface down to the depth of 0,50 m in 0,10 m intervals and separated into six aggregate size classes: 0.053; 0.125; 0.30; 0.71; 2 e 4 mm. We also prepared samples mixing different size classes, like as: (4+0.125), (2+0.125), (4+2+0.71), (4+2+0.30) e (4+0.30+0.125)mm. Measurements of particle density and aggregate bulk density using conventional method were performed to all depths. The linear soil attenuation coefficients and aggregate soil attenuation coefficients were measured with gamma-ray transmission system using an 241 Am (59,53 keV and 100 mCi) radiation source, a (2 x 2) in NaI scintillation detector, cylindric collimators (2 mm diameter to the source and 5 mm diameter to the detector) and gamma spectrometry standard electronics, connected to a multichannel. The obtained results for total, macro and microporosity are in a good agreement with the ones using the convention method, showing the applicability of the gamma-ray transmission method. (author)

Analysing Structure Dynamics in Arable Soils using X-ray Micro-Tomography

Science.gov (United States)

Schlüter, S.; Weller, U.; Vogel, H.-J.

2009-04-01

Structure is a dynamic property of soil. It interacts with many biotic and abiotic features and controls various soil functions. We analyzed soil structure within different plots of the ''Static Fertilisation Experiment'' at the agricultural research station in Bad Lauchstaedt (Germany) using X-ray micro tomography. The aim was to investigate in how far different levels of organic carbon, increased microbial activity and enhanced plant growth affects structural properties of an arable soil. Since 106 years one plot has experienced a constant application of farmyard manure and fertilisers, whereas the other has never been fertilised in this period. Intact soil cores from the chernozem soil at the two plots were taken from a depth of 5 to 15 cm (Ap-horizon) and 35 to 45 cm (Ah-horizon) to analyse structural changes with depth and in two different seasons (spring and summer) to investigate structure dynamics. The pore structure was analysed by quantifying the mean geometrical and topological characteristics of the pore network as a function of pore size. This was done by a combination of Minkowski functionals and morphological size distibution. For small structural features close to the image resolution the results clearly depend on the applied filtering technique and segmentation thresholds. Therefore the application of different image enhancement techniques is discussed. Furthermore, a new method for an automated determination of grey value thesholds for the segmentation of CT-images into pore space and solid is developed and evaluated. We highlight the relevance of image resolution for structure analysis. Results of the structure analysis reveal that the spring samples of the ploughed layer (Ap-horizon) from the fertilised plot have significantly higher macroporosities (P connectivity of the pore network is better in the fertilised plot and the pore size distribution was found to be different, too. The differences in porosity and pore connectivity increase from

Change of microstructure of clays due to the presence of heavy metal ions in pore water

Directory of Open Access Journals (Sweden)

Saiyouri N.

2010-06-01

Full Text Available The compressibility of engineered barrier clays is, to a large extent, controlled by microstructure change due to the presence of chemical ions in clay-water system. This paper aims to investigate the change of microstructure of clays due to the presence of heavy metal ions in pore water. We use two pure clays (kaolinite and bentonite in the study. One-dimensional consolidation tests were performed on reconstituted samples, which are prepared with distilled water and three types of heavy metal solutions (Pb(NO32, Cu(NO32, Zn(NO32,. In order to better understand the impact of chemical pore fluid on microstructure of the two clays, following the consolidation test, scanning electron microscope (SEM observations and mercury intrusion pore size distribution measurements (MIP were conducted. Due to the measurement range of MIP, which is only allowed to measure the minimal pore size 20 Å, BET method by gas sorption, whose measurement pore size range is from 3.5 Å to 500 Å, is used to measure the micropore size distribution. By this method, specific surface area of the soils can be also determined. It can be employed to demonstrate the difference of creep performance between the soils. Furthermore, a series of batch equilibrium tests were conducted to better understand the physical-chemical interactions between the particles of soils and the heavy metal ions. With the further consideration of the interparticle electrical attractive and repulsive force, an attempt has been made to predict the creep behaviour by using the modified Gouy-Chapman double layer theory. The results of calculation were compared with that of tests. The comparison shows that the prediction of compressibility of the clays according to the modified double diffuse layer theory can be reasonably agreement with the experimental data.

Evaluation of physical property of light-weight soil with air foam using X-ray CT method

International Nuclear Information System (INIS)

Otani, Jun; Mukunoki, Toshifumi; Kikuchi, Yoshiaki

2000-01-01

The objective of this paper is to investigate the physical property of light-weight soil made of dredged slurry mixed with air foam and cement using X-ray CT method. In this study, not only the specimen made in laboratory but also the one sampled at the in-situ construction site were used and the property in the soil was visualized and the distributions of the density an air porosity were evaluated quantitatively using the results of CT scanning. Here, the method of image processing analysis was also used for this evaluation study. Based on the results obtained in this study, it is concluded that the X-ray CT method is a powerful tool even for geotechnical engineering and this makes not only the visualization but also the quantitative ion discussion possible for the light-weight soil with air foam. (author)

Appendiceal diameter: CT versus sonographic measurements

Energy Technology Data Exchange (ETDEWEB)

Orscheln, Emily S. [University of Cincinnati Medical Center, Department of Radiology, Cincinnati, OH (United States); Trout, Andrew T. [Cincinnati Children' s Hospital Medical Center, Department of Radiology, Cincinnati, OH (United States)

2016-03-15

Ultrasound and CT are the dominant imaging modalities for assessment of suspected pediatric appendicitis, and the most commonly applied diagnostic criterion for both modalities is appendiceal diameter. The classically described cut-off diameter for the diagnosis of appendicitis is 6 mm when using either imaging modality. To demonstrate the fallacy of using the same cut-off diameter for both CT and US in the diagnosis of appendicitis. We conducted a retrospective review of patients younger than 18 years who underwent both US and CT of the appendix within 24 h. The shortest transverse dimension of the appendix was measured at the level of the proximal, mid and distal appendix on US and CT images. We compared mean absolute difference in appendiceal diameter between US and CT, using the paired t-test. We reviewed exams of 155 children (58.7% female) with a mean age of 11.3 ± 4.2 years; 38 of the children (24.5%) were diagnosed with appendicitis. The average time interval between US and CT was 7.0 ± 5.4 h. Mean appendiceal diameter measured by CT was significantly larger than that measured by US in cases without appendicitis (5.3 ± 1.0 mm vs. 4.7 ± 1.1 mm, P < 0.0001) and in cases with appendicitis (8.3 ± 2.2 mm vs. 7.0 ± 2.0 mm, P < 0.0001). Mean absolute diameter difference at any location along the appendix was 1.3-1.4 mm in normal appendices and 2 mm in cases of appendicitis. Measured appendiceal diameter differs between US and CT by 1-2 mm, calling into question use of the same diameter cut-off (6 mm) for both modalities for the diagnosis of appendicitis. (orig.)

Appendiceal diameter: CT versus sonographic measurements

International Nuclear Information System (INIS)

Orscheln, Emily S.; Trout, Andrew T.

2016-01-01

Ultrasound and CT are the dominant imaging modalities for assessment of suspected pediatric appendicitis, and the most commonly applied diagnostic criterion for both modalities is appendiceal diameter. The classically described cut-off diameter for the diagnosis of appendicitis is 6 mm when using either imaging modality. To demonstrate the fallacy of using the same cut-off diameter for both CT and US in the diagnosis of appendicitis. We conducted a retrospective review of patients younger than 18 years who underwent both US and CT of the appendix within 24 h. The shortest transverse dimension of the appendix was measured at the level of the proximal, mid and distal appendix on US and CT images. We compared mean absolute difference in appendiceal diameter between US and CT, using the paired t-test. We reviewed exams of 155 children (58.7% female) with a mean age of 11.3 ± 4.2 years; 38 of the children (24.5%) were diagnosed with appendicitis. The average time interval between US and CT was 7.0 ± 5.4 h. Mean appendiceal diameter measured by CT was significantly larger than that measured by US in cases without appendicitis (5.3 ± 1.0 mm vs. 4.7 ± 1.1 mm, P < 0.0001) and in cases with appendicitis (8.3 ± 2.2 mm vs. 7.0 ± 2.0 mm, P < 0.0001). Mean absolute diameter difference at any location along the appendix was 1.3-1.4 mm in normal appendices and 2 mm in cases of appendicitis. Measured appendiceal diameter differs between US and CT by 1-2 mm, calling into question use of the same diameter cut-off (6 mm) for both modalities for the diagnosis of appendicitis. (orig.)

Long-term no-tillage application increases soil organic carbon, nitrous oxide emissions and faba bean (Vicia faba L.) yields under rain-fed Mediterranean conditions.

Science.gov (United States)

Badagliacca, Giuseppe; Benítez, Emilio; Amato, Gaetano; Badalucco, Luigi; Giambalvo, Dario; Laudicina, Vito Armando; Ruisi, Paolo

2018-05-20

The introduction of legumes into crop sequences and the reduction of tillage intensity are both proposed as agronomic practices to mitigate the soil degradation and negative impact of agriculture on the environment. However, the joint effects of these practices on nitrous oxide (N 2 O) and ammonia (NH 3 ) emissions from soil remain unclear, particularly concerning semiarid Mediterranean areas. In the frame of a long-term field experiment (23 years), a 2-year study was performed on the faba bean (Vicia faba L.) to evaluate the effects of the long-term use of no tillage (NT) compared to conventional tillage (CT) on yield and N 2 O and NH 3 emissions from a Vertisol in a semiarid Mediterranean environment. Changes induced by the tillage system in soil bulk density, water filled pore space (WFPS), organic carbon (TOC) and total nitrogen (TN), denitrifying enzyme activity (DEA), and bacterial gene (16S, amoA, and nosZ) abundance were measured as parameters potentially affecting N gas emissions. No tillage, compared with CT, significantly increased the faba bean grain yield by 23%. The tillage system had no significant effect on soil NH 3 emissions. Total N 2 O emissions, averaged over two cropping seasons, were higher in NT than those in CT plots (2.58 vs 1.71 kg N 2 O-N ha -1 , respectively; P emissions in NT plots were ascribed to the increase of soil bulk density and WFPS, bacteria (16S abundance was 96% higher in NT than that in CT) and N cycle genes (amoA and nosZ abundances were respectively 154% and 84% higher in NT than that in CT). The total N 2 O emissions in faba bean were similar to those measured in other N-fertilized crops. In conclusion, a full evaluation of NT technique, besides the benefits on soil characteristics (e.g. TOC increase) and crop yield, must take into account some criticisms related to the increase of N 2 O emissions compared to CT. Copyright © 2018 Elsevier B.V. All rights reserved.

How does soil management affect carbon losses from soils?

Science.gov (United States)

Klik, A.; Trümper, G.

2009-04-01

Agricultural soils are a major source as well as a sink of organic carbon (OC). Amount and distribution of OC within the soil and within the landscape are driven by land management but also by erosion and deposition processes. At the other hand the type of soil management influences mineralization and atmospheric carbon dioxide losses by soil respiration. In a long-term field experiment the impacts of soil tillage systems on soil erosion processes were investigated. Following treatments were compared: 1) conventional tillage (CT), 2) conservation tillage with cover crop during the winter period (CS), and 3) no-till with cover crop during winter period (NT). The studies were carried out at three sites in the Eastern part of Austria with annual precipitation amounts from 650 to 900 mm. The soil texture ranged from silt loam to loam. Since 2007 soil CO2 emissions are measured with a portable soil respiration system in intervals of about one week, but also in relation to management events. Concurrent soil temperature and soil water content are measured and soil samples are taken for chemical and microbiological analyses. An overall 14-yr. average soil loss between 1.0 t.ha-1.yr-1 for NT and 6.1 t.ha-1.yr-1 for CT resulted in on-site OC losses from 18 to 79 kg ha-1.yr-1. The measurements of the carbon dioxide emissions from the different treatments indicate a high spatial variation even within one plot. Referred to CT plots calculated carbon losses amounted to 65-94% for NT plots while for the different RT plots they ranged between 84 and 128%. Nevertheless site specific considerations have to be taken into account. Preliminary results show that the adaptation of reduced or no-till management strategies has enormous potential in reducing organic carbon losses from agricultural used soils.

Composição química da solução do solo nas diferentes classes de poro do solo Chemical composition of soil solution in different soil pore classes

Directory of Open Access Journals (Sweden)

Thomas Vincent Gloaguen

2009-10-01

tensions at the base of the columns: 0; -13.3; -26.7; -40.0 and -53.3 kPa, corresponding to the following soil pore classes: Ø > 76.2 µm; 44.6 44.6 µm; 25.2 44.6 µm. The data were fitted to the linear model Y = a + b.log(X, where Y is the measured value and X the pore diameter, was significant, specially after applying 300 mm of water or wastewater. Although the nitrate micropore concentration exceeded the limit value [NO3-]lim for potable freshwater (Class 1, the low macropore concentration (always lower than [NO3-]lim/4 limited the contamination risk by leaching. Moreover, the addition of gypsum resulted in reduced nitrate and sodium concentrations.

CT measurements of cranial growth: microcephaly

International Nuclear Information System (INIS)

Hahn, F.J.; Chu, W.K.; Torkelson, R.D.

1984-01-01

Computed tomographic (CT) head scans were measured to determine the cranial dimensions of four children with microcephaly. These measurements were compared with cranial dimensions of normal children. CT proved to be useful in determining the developmental status of children with neurologic problems relative to their normal counterparts on the basis on cranial dimensions

A framework to measure the availability of engineered nanoparticles in soils

NARCIS (Netherlands)

Rodrigues, S.M.; Trindade, T.; Duarte, A.C.; Pereira, E.; Koopmans, G.F.; Römkens, P.F.A.M.

2016-01-01

In this study, the reactions of engineered nanoparticles (ENPs) in soils, with respect to their nanospecific properties, and observed effects of key soil properties (e.g. pH, ionic strength and natural colloids) on their stability in pore water are discussed. Key processes include aggregation and

Effect of rainfall infiltration into unsaturated soil using soil column

Science.gov (United States)

Ibrahim, A.; Mukhlisin, M.; Jaafar, O.

2018-02-01

Rainfall especially in tropical region caused infiltration to the soil slope. The infiltration may change pore water pressure or matric suction of the soil. The event of rainfall infiltration into soil is a complex mechanism. Therefore, the main objectives of this research paper is to study the influence of rainfall intensity and duration that changed pore water pressure to soil. There are two types of soils used in this study; forest soil and kaolin. Soil column apparatus is used for experiments. Rainfall were applied to the soil and result for 3, 6, 12, 24, 72, 120 and 168 hours were retrieved. Result shows that for the both types of soil, the negative pore water pressures were increased during wetting process and gradually decreased towards drying process. The results also show that pore water pressure at top part was increased greatly as the wetting process started compared to the middle and bottom part of the column.

Cine-CT measurement of cortical renal blood flow

International Nuclear Information System (INIS)

Jaschke, W.R.; Gould, R.G.; Cogan, M.G.; Sievers, R.; Lipton, M.J.

1987-01-01

A modified indicator-dilution technique using radiographic contrast material and a cine-CT scanner was used to measure blood flow in the renal cortex of dogs. To validate this technique, CT measurements were correlated with simultaneous measurements of flow determined by radioactive microspheres. Measurements were taken during euvolemic conditions and after hemorrhage. Thirty-nine measurements were compared, covering a flow range from 1 to 7 ml min-1 g-1, and a good correlation was found between the cine-CT and microsphere results (r = 0.93; p less than 0.001). Additionally, cine-CT measurements were made of the mean transit time (MTT) of contrast material through the renal cortex, and the reciprocal of these MTT values was also well correlated to microsphere determined flow (r = 0.94; p less than 0.001). Thus, cine-CT appears to be a promising new technique for measuring renal blood flow

Using Resistivity Measurements to Determine Anisotropy in Soil and Weathered Rock

Directory of Open Access Journals (Sweden)

S. Soto-Caban

2013-08-01

Full Text Available This study uses electrical resistivity measurements of soils and weathered rock to perform a fast and reliable evaluation of field anisotropy. Two test sites at New Concord, Ohio were used for the study. These sites are characterized by different landform and slightly east dipping limestone and siltstone formations of Pennsylvanian age. The measured resistivity ranged from 19 Ω∙m to 100 ��∙m, and varied with depth, landform, and season. The anisotropy was determined by a comparison of resistance values along the directions of strike and the dip. Measurements showed that the orientation of electrical anisotropy in the shallow ground may vary due to fluid connection, which is determined by the pore geometry in soil and rock, as well as by the direction of fluid movement. Results from this study indicated that a portable electrical resistivity meter is sensitive and reliable enough to be used for shallow ground fluid monitoring.

Pore volume is most highly correlated with the visual assessment of skin pores.

Science.gov (United States)

Kim, S J; Shin, M K; Back, J H; Koh, J S

2014-11-01

Many studies have been focused on evaluating assessment techniques for facial pores amid growing attention on skin care. Ubiquitous techniques used to assess the size of facial pores include visual assessment, cross-section images of the skin surface, and profilometric analysis of silicone replica of the facial skin. In addition, there are indirect assessment methods, including observation of pores based on confocal laser scanning microscopy and the analysis of sebum secretion and skin elasticity. The aim of this study was to identify parameters useful in estimating pore of surface in normal skin. The severity of pores on the cheek area by frontal optical images was divided on a 0-6 scale with '0' being faint and small pore and '6' being obvious and large pore. After the photos of the frontal cheek of 32 women aged between 35 and 49 were taken, the size of their pores was measured on a 0-6 scale; and the correlation between visual grading of pore and various evaluations (pore volume by 3-D image, pore area and number by Optical Image Analyzer) contributing to pore severity investigated using direct, objective, and noninvasive evaluations. The visual score revealed that the size of pores was graded on a 1-6 scale. Visual grading of pore was highly correlated with pore volume measured from 3-D images and pore area measured from 2-D optical images in the order (P pore was also slightly correlated with the number of pores in size of over 0.04 mm(2) (P pore score and pore volume can be explained by 3-D structural characteristics of pores. It is concluded that pore volume and area serve as useful parameters in estimating pore of skin surface. © 2014 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.

Characterization of bentonite pore structure by combining chloride porosity and SAXS measurements

International Nuclear Information System (INIS)

Muurinen, A.

2010-01-01

Document available in extended abstract form only. The total water porosity, chloride porosity and the microstructure were studied in compacted samples prepared from MX-80 and Deponit bentonites equilibrated through filter plates with 0.1 M NaCl solution for 12.5 months. The dry densities of the samples varied approximately from 0.7 to 1.55 g/cm 3 . XRD and SAXS (Small Angle X-ray Scattering) were used to study the microstructure of the bentonites. It was obvious that the chloride porosity was lower than the water porosity in both clays, which indicates the exclusion caused by the negatively charged montmorillonite surfaces. In the XRD and SAXS measurements the measured basal spaces represented by the diffraction peaks were smaller than the theoretical ones assuming a homogenous microstructure. This indicates that there was a substantial amount of water also in the pores, which were not represented by the peaks. This could explain the difference between the measured chloride porosity and the modelling curve obtained with the Donnan model. By combining the information from the SAXS measurements and the chloride exclusion measurements, it was possible to evaluate the volumes of the soft and dense fractions and the pore sizes in each fraction for MX-80. The chloride porosity was mostly caused by the pores in the soft clay where the pore size is larger. The volume of the soft fraction decreased and its density increased with increasing density of the sample. (authors)

Permeability changes induced by microfissure closure and opening in tectonized materials. Effect on slope pore pressure regime.

Science.gov (United States)

De la Fuente, Maria; Vaunat, Jean; Pedone, Giuseppe; Cotecchia, Federica; Sollecito, Francesca; Casini, Francesca

2015-04-01

Tectonized clays are complex materials characterized by several levels of structures that may evolve during load and wetting/drying processes. Some microstructural patterns, as microfissures, have a particular influence on the value of permeability which is one of the main factors controlling pore pressure regime in slopes. In this work, the pore pressure regime measured in a real slope of tectonized clay in Southern Italy is analyzed by a numerical model that considers changes in permeability induced by microfissure closure and opening during the wetting and drying processes resulting from climatic actions. Permeability model accounts for the changes in Pore Size Distribution observed by Microscopy Intrusion Porosimetry. MIP tests are performed on representative samples of ground in initial conditions ("in situ" conditions) and final conditions (deformed sample after applying a wetting path that aims to reproduce the saturation of the soil under heavy rains). The resulting measurements allow for the characterization at microstructural level of the soil, identifying the distribution of dominant families pores in the sample and its evolution under external actions. Moreover, comparison of pore size density functions allows defining a microstructural parameter that depends on void ratio and degree of saturation and controls the variation of permeability. Model has been implemented in a thermo-hydro-mechanical code provided with a special boundary condition for climatic actions. Tool is used to analyze pore pressure measurements obtained in the tectonized clay slope. Results are analyzed at the light of the effect that permeability changes during wetting and drying have on the pore pressure regime.

Pore-size distribution and compressibility of coarse sandy subsoil with added biochar

DEFF Research Database (Denmark)

Petersen, C. T.; Hansen, E.; Larsen, H. H.

2016-01-01

Sustainable agricultural production on coarse sandy soil is constrained by the restricted growth of roots, and poor water and nutrient retention. Amending the soil with biochar can reduce these problems, but the processes involved are not known in detail. We investigated in the laboratory...... the effects of two fine-grained gasification biochars made of straw (LTST) and other materials (LTSN) and of one fast pyrolysis straw biochar (FPST) on pore-size distribution and soil compressibility when added to coarse sandy subsoil. Water retention and therefore pore-size distribution were affected...... systematically. All biochars converted drainable pore space with pore diameters in the range 60–300 µm into water-retaining pores of size 0.2–60 µm, which was taken as an estimate of available water capacity (AWC). Effects were linear over the whole range of biochar (0–4% by mass). The effect of LTST and LTSN...

Assessment the effect of homogenized soil on soil hydraulic properties and soil water transport

Science.gov (United States)

Mohawesh, O.; Janssen, M.; Maaitah, O.; Lennartz, B.

2017-09-01

Soil hydraulic properties play a crucial role in simulating water flow and contaminant transport. Soil hydraulic properties are commonly measured using homogenized soil samples. However, soil structure has a significant effect on the soil ability to retain and to conduct water, particularly in aggregated soils. In order to determine the effect of soil homogenization on soil hydraulic properties and soil water transport, undisturbed soil samples were carefully collected. Five different soil structures were identified: Angular-blocky, Crumble, Angular-blocky (different soil texture), Granular, and subangular-blocky. The soil hydraulic properties were determined for undisturbed and homogenized soil samples for each soil structure. The soil hydraulic properties were used to model soil water transport using HYDRUS-1D.The homogenized soil samples showed a significant increase in wide pores (wCP) and a decrease in narrow pores (nCP). The wCP increased by 95.6, 141.2, 391.6, 3.9, 261.3%, and nCP decreased by 69.5, 10.5, 33.8, 72.7, and 39.3% for homogenized soil samples compared to undisturbed soil samples. The soil water retention curves exhibited a significant decrease in water holding capacity for homogenized soil samples compared with the undisturbed soil samples. The homogenized soil samples showed also a decrease in soil hydraulic conductivity. The simulated results showed that water movement and distribution were affected by soil homogenizing. Moreover, soil homogenizing affected soil hydraulic properties and soil water transport. However, field studies are being needed to find the effect of these differences on water, chemical, and pollutant transport under several scenarios.

Fines Classification Based on Sensitivity to Pore-Fluid Chemistry

KAUST Repository

Jang, Junbong

2015-12-28

The 75-μm particle size is used to discriminate between fine and coarse grains. Further analysis of fine grains is typically based on the plasticity chart. Whereas pore-fluid-chemistry-dependent soil response is a salient and distinguishing characteristic of fine grains, pore-fluid chemistry is not addressed in current classification systems. Liquid limits obtained with electrically contrasting pore fluids (deionized water, 2-M NaCl brine, and kerosene) are combined to define the soil "electrical sensitivity." Liquid limit and electrical sensitivity can be effectively used to classify fine grains according to their fluid-soil response into no-, low-, intermediate-, or high-plasticity fine grains of low, intermediate, or high electrical sensitivity. The proposed methodology benefits from the accumulated experience with liquid limit in the field and addresses the needs of a broader range of geotechnical engineering problems. © ASCE.

Fines classification based on sensitivity to pore-fluid chemistry

Science.gov (United States)

Jang, Junbong; Santamarina, J. Carlos

2016-01-01

The 75-μm particle size is used to discriminate between fine and coarse grains. Further analysis of fine grains is typically based on the plasticity chart. Whereas pore-fluid-chemistry-dependent soil response is a salient and distinguishing characteristic of fine grains, pore-fluid chemistry is not addressed in current classification systems. Liquid limits obtained with electrically contrasting pore fluids (deionized water, 2-M NaCl brine, and kerosene) are combined to define the soil “electrical sensitivity.” Liquid limit and electrical sensitivity can be effectively used to classify fine grains according to their fluid-soil response into no-, low-, intermediate-, or high-plasticity fine grains of low, intermediate, or high electrical sensitivity. The proposed methodology benefits from the accumulated experience with liquid limit in the field and addresses the needs of a broader range of geotechnical engineering problems.

Preferential flow from pore to landscape scales

Science.gov (United States)

Koestel, J. K.; Jarvis, N.; Larsbo, M.

2017-12-01

In this presentation, we give a brief personal overview of some recent progress in quantifying preferential flow in the vadose zone, based on our own work and those of other researchers. One key challenge is to bridge the gap between the scales at which preferential flow occurs (i.e. pore to Darcy scales) and the scales of interest for management (i.e. fields, catchments, regions). We present results of recent studies that exemplify the potential of 3-D non-invasive imaging techniques to visualize and quantify flow processes at the pore scale. These studies should lead to a better understanding of how the topology of macropore networks control key state variables like matric potential and thus the strength of preferential flow under variable initial and boundary conditions. Extrapolation of this process knowledge to larger scales will remain difficult, since measurement technologies to quantify macropore networks at these larger scales are lacking. Recent work suggests that the application of key concepts from percolation theory could be useful in this context. Investigation of the larger Darcy-scale heterogeneities that generate preferential flow patterns at the soil profile, hillslope and field scales has been facilitated by hydro-geophysical measurement techniques that produce highly spatially and temporally resolved data. At larger regional and global scales, improved methods of data-mining and analyses of large datasets (machine learning) may help to parameterize models as well as lead to new insights into the relationships between soil susceptibility to preferential flow and site attributes (climate, land uses, soil types).

Corn Yield and Soil Nitrous Oxide Emission under Different Fertilizer and Soil Management: A Three-Year Field Experiment in Middle Tennessee.

Science.gov (United States)

Deng, Qi; Hui, Dafeng; Wang, Junming; Iwuozo, Stephen; Yu, Chih-Li; Jima, Tigist; Smart, David; Reddy, Chandra; Dennis, Sam

2015-01-01

A three-year field experiment was conducted to examine the responses of corn yield and soil nitrous oxide (N2O) emission to various management practices in middle Tennessee. The management practices include no-tillage + regular applications of urea ammonium nitrate (NT-URAN); no-tillage + regular applications of URAN + denitrification inhibitor (NT-inhibitor); no-tillage + regular applications of URAN + biochar (NT-biochar); no-tillage + 20% applications of URAN + chicken litter (NT-litter), no-tillage + split applications of URAN (NT-split); and conventional tillage + regular applications of URAN as a control (CT-URAN). Fertilizer equivalent to 217 kg N ha(-1) was applied to each of the experimental plots. Results showed that no-tillage (NT-URAN) significantly increased corn yield by 28% over the conventional tillage (CT-URAN) due to soil water conservation. The management practices significantly altered soil N2O emission, with the highest in the CT-URAN (0.48 mg N2O m(-2) h(-1)) and the lowest in the NT-inhibitor (0.20 mg N2O m(-2) h(-1)) and NT-biochar (0.16 mg N2O m(-2) h(-1)) treatments. Significant exponential relationships between soil N2O emission and water filled pore space were revealed in all treatments. However, variations in soil N2O emission among the treatments were positively correlated with the moisture sensitivity of soil N2O emission that likely reflects an interactive effect between soil properties and WFPS. Our results indicated that improved fertilizer and soil management have the potential to maintain highly productive corn yield while reducing greenhouse gas emissions.

Can pore-clogging by ash explain post-fire runoff?

Science.gov (United States)

Stoof, Cathelijne R.; Gevaert, Anouk I.; Baver, Christine; Hassanpour, Bahareh; Morales, Veronica L.; Zhang, Wei; Martin, Deborah; Giri, Shree K.; Steenhuis, Tammo S.

2016-01-01

Ash plays an important role in controlling runoff and erosion processes after wildfire and has frequently been hypothesised to clog soil pores and reduce infiltration. Yet evidence for clogging is incomplete, as research has focussed on identifying the presence of ash in soil; the actual flow processes remain unknown. We conducted laboratory infiltration experiments coupled with microscope observations in pure sands, saturated hydraulic conductivity analysis, and interaction energy calculations, to test whether ash can clog pores (i.e. block pores such that infiltration is hampered and ponding occurs). Although results confirmed previous observations of ash washing into pores, clogging was not observed in the pure sands tested, nor were conditions found for which this does occur. Clogging by means of strong attachment of ash to sand was deemed unlikely given the negative surface charge of the two materials. Ponding due to washing in of ash was also considered improbable given the high saturated conductivity of pure ash and ash–sand mixtures. This first mechanistic step towards analysing ash transport and attachment processes in field soils therefore suggests that pore clogging by ash is unlikely to occur in sands. Discussion is provided on other mechanisms by which ash can affect post-fire hydrology.

Differences in the behaviour of HTO and H2O in soil after condensation from the atmosphere and conversion of HT to HTO and OBT in soil relative to moisture content and pore volume

International Nuclear Information System (INIS)

Bunnenberg, C.; Feinhals, J.; Wiener, B.

1986-01-01

Theoretical considerations and field and soil column experiments have identified the condensation of atmospheric water vapour as an additional process in the HTO contamination of soils. In contrast to wash-out, where tritium concentrations of the deposited water are the same as in the falling drops, the specific activity of the condensed water is increased compared with that of the atmospheric humidity, when the partial vapour pressure gradient of HTO between atmosphere and soil is higher than the H 2 O pressure gradient. With respect to HTO deposition, condensation may therefore be more effective per unit precipitation than wash-out. Experiments on the conversion rates of HT to HTO and OBT in soils have exhibited a pronounced dependence on moisture content and free pore volume. With rising moisture content, conversion increases due to enhanced bacterial action; while close to field capacity a decrease occurs as a result of restricted HT diffusion through the soil pores. In short-term experiments about 0.1% of the converted HT was found in the OBT form. (author)

Atributos físicos do solo sob diferentes preparos e coberturas influenciados pela distribuição de poros Soil physical attributes under different tillage systems and cover crops, as influenced by pore distribution

Directory of Open Access Journals (Sweden)

Eurâimi de Q. Cunha

2010-11-01

Full Text Available Com este trabalho se propõe avaliar a influência da distribuição de poros sobre alguns atributos físicos do solo sob semeadura direta (SD e preparo convencional (PC, cultivado com diferentes culturas de cobertura, no sistema de produção orgânica de feijão e milho. O trabalho foi conduzido em Santo Antônio de Goiás, GO, em Latossolo Vermelho distrófico. Em novembro de 2003 foram instalados quatro experimentos, dois em SD e dois em PC, um em cada manejo com feijão e o outro com milho. Foram comparados em blocos ao acaso com quatro repetições, crotalária, guandu, mucuna-preta, sorgo e pousio. Amostragens de solo das parcelas e de uma mata próxima foram realizadas nas profundidades de 0-0,10 e 0,10-0,20 m, em novembro de 2007, para determinação do teor de matéria orgânica (M.O. e de atributos físicos do solo. O uso do solo sob vegetação de cerrado para a produção agrícola, independentemente do sistema de cultivo, resultou em redução na porosidade total (Pt, macroporosidade (Mp e capacidade de aeração do solo (CAS. Os atributos físicos do solo foram afetados favoravelmente pela M.O. As variações em Pt, Mp, CAS e capacidade de água disponível do solo podem ser explicadas pela variação na distribuição do tamanho de poros do solo, principalmente daqueles com ∅ > 0,075 mm.This study aimed to evaluate the influence of pore distribution on some physical attributes of soil under no-tillage (NT and conventional tillage (CT systems, cultivated with different cover crops, in organic production of common bean and corn. The work was carried out in Santo Antônio de Goiás, GO, on an Oxisol. In November 2003 four experiments were installed, two of them under NT and the other two under CT. In each soil tillage system, an experiment was conducted with corn and another with common bean. Sunn hemp, pigeon pea, velvet bean, sorghum, and fallow were compared in a randomized block design, with four replications. Samples were

Understanding the microscopic moisture migration in pore space using DEM simulation

Directory of Open Access Journals (Sweden)

Yuan Guo

2015-04-01

Full Text Available The deformation of soil skeleton and migration of pore fluid are the major factors relevant to the triggering of and damages by liquefaction. The influence of pore fluid migration during earthquake has been demonstrated from recent model experiments and field case studies. Most of the current liquefaction assessment models are based on testing of isotropic liquefiable materials. However the recent New Zealand earthquake shows much severer damages than those predicted by existing models. A fundamental cause has been contributed to the embedded layers of low permeability silts. The existence of these silt layers inhibits water migration under seismic loads, which accelerated liquefaction and caused a much larger settlement than that predicted by existing theories. This study intends to understand the process of moisture migration in the pore space of sand using discrete element method (DEM simulation. Simulations were conducted on consolidated undrained triaxial testing of sand where a cylinder sample of sand was built and subjected to a constant confining pressure and axial loading. The porosity distribution was monitored during the axial loading process. The spatial distribution of porosity change was determined, which had a direct relationship with the distribution of excess pore water pressure. The non-uniform distribution of excess pore water pressure causes moisture migration. From this, the migration of pore water during the loading process can be estimated. The results of DEM simulation show a few important observations: (1 External forces are mainly carried and transmitted by the particle chains of the soil sample; (2 Porosity distribution during loading is not uniform due to non-homogeneous soil fabric (i.e. the initial particle arrangement and existence of particle chains; (3 Excess pore water pressure develops differently at different loading stages. At the early stage of loading, zones with a high initial porosity feature higher

Phosphorus leaching in a soil textural gradient

DEFF Research Database (Denmark)

Glæsner, Nadia; Kjærgaard, Charlotte; Rubæk, Gitte Holton

2009-01-01

Texture is a major factor influencing mobilization and transport of P in soil owing partly to differences in adsorptive properties, and partly to differences in pore-size distribution and pore organization. Slurry application strategies may be important mitigation measures for reducing agricultur...

The hydraulic conductivity of sediments: A pore size perspective

KAUST Repository

Ren, X.W.

2017-12-06

This article presents an analysis of previously published hydraulic conductivity data for a wide range of sediments. All soils exhibit a prevalent power trend between the hydraulic conductivity and void ratio. Data trends span 12 orders of magnitude in hydraulic conductivity and collapse onto a single narrow trend when the hydraulic conductivity data are plotted versus the mean pore size, estimated using void ratio and specific surface area measurements. The sensitivity of hydraulic conductivity to changes in the void ratio is higher than the theoretical value due to two concurrent phenomena: 1) percolating large pores are responsible for most of the flow, and 2) the larger pores close first during compaction. The prediction of hydraulic conductivity based on macroscale index parameters in this and similar previous studies has reached an asymptote in the range of kmeas/5≤kpredict≤5kmeas. The remaining uncertainty underscores the important role of underlying sediment characteristics such as pore size distribution, shape, and connectivity that are not measured with index properties. Furthermore, the anisotropy in hydraulic conductivity cannot be recovered from scalar parameters such as index properties. Overall, results highlight the robustness of the physics inspired data scrutiny based Hagen–Poiseuille and Kozeny-Carman analyses.

Predicting saturated hydraulic conductivity using soil morphological properties

Directory of Open Access Journals (Sweden)

Gülay Karahan

2016-01-01

Full Text Available Many studies have been conducted to predict soil saturated hydraulic conductivity (Ks by parametric soil properties such as bulk density and particle-size distribution. Although soil morphological properties have a strong effect on Ks, studies predicting Ks by soil morphological properties such as type, size, and strength of soil structure; type, orientation and quantity of soil pores and roots and consistency are rare. This study aimed at evaluating soil morphological properties to predict Ks. Undisturbed soil samples (15 cm length and 8.0 cm id. were collected from topsoil (0-15 cm and subsoil (15-30 cm (120 samples with a tractor operated soil sampler at sixty randomly selected sampling sites on a paddy field and an adjecent grassland in Central Anatolia (Cankırı, Turkey. Synchronized disturbed soil samples were taken from the same sampling sites and sampling depths for basic soil analyses. Saturated hydraulic conductivity was measured on the soil columns using a constant-head permeameter. Following the Ks measurements, the upper part of soil columns were covered to prevent evaporation and colums were left to drain in the laboratory. When the water flow through the column was stopped, a subsample were taken for bulk density and then soil columns were disturbed for describing the soil morphological properties. In addition, soil texture, bulk density, pH, field capacity, wilting point, cation exchange capacity, specific surface area, aggregate stability, organic matter, and calcium carbonate were measured on the synchronized disturbed soil samples. The data were divided into training (80 data values and validation (40 data values sets. Measured values of Ks ranged from 0.0036 to 2.14 cmh-1 with a mean of 0.86 cmh-1. The Ks was predicted from the soil morphological and parametric properties by stepwise multiple linear regression analysis. Soil structure class, stickiness, pore-size, root-size, and pore-quantity contributed to the Ks prediction

An Image-based Micro-continuum Pore-scale Model for Gas Transport in Organic-rich Shale

Science.gov (United States)

Guo, B.; Tchelepi, H.

2017-12-01

Gas production from unconventional source rocks, such as ultra-tight shales, has increased significantly over the past decade. However, due to the extremely small pores ( 1-100 nm) and the strong material heterogeneity, gas flow in shale is still not well understood and poses challenges for predictive field-scale simulations. In recent years, digital rock analysis has been applied to understand shale gas transport at the pore-scale. An issue with rock images (e.g. FIB-SEM, nano-/micro-CT images) is the so-called "cutoff length", i.e., pores and heterogeneities below the resolution cannot be resolved, which leads to two length scales (resolved features and unresolved sub-resolution features) that are challenging for flow simulations. Here we develop a micro-continuum model, modified from the classic Darcy-Brinkman-Stokes framework, that can naturally couple the resolved pores and the unresolved nano-porous regions. In the resolved pores, gas flow is modeled with Stokes equation. In the unresolved regions where the pore sizes are below the image resolution, we develop an apparent permeability model considering non-Darcy flow at the nanoscale including slip flow, Knudsen diffusion, adsorption/desorption, surface diffusion, and real gas effect. The end result is a micro-continuum pore-scale model that can simulate gas transport in 3D reconstructed shale images. The model has been implemented in the open-source simulation platform OpenFOAM. In this paper, we present case studies to demonstrate the applicability of the model, where we use 3D segmented FIB-SEM and nano-CT shale images that include four material constituents: organic matter, clay, granular mineral, and pore. In addition to the pore structure and the distribution of the material constituents, we populate the model with experimental measurements (e.g. size distribution of the sub-resolution pores from nitrogen adsorption) and parameters from the literature and identify the relative importance of different

Capillary pressure across a pore throat in the presence of surfactants

KAUST Repository

Jang, Junbong

2016-11-22

Capillarity controls the distribution and transport of multiphase and immiscible fluids in soils and fractured rocks; therefore, capillarity affects the migration of nonaqueous contaminants and remediation strategies for both LNAPLs and DNAPLs, constrains gas and oil recovery, and regulates CO2 injection and geological storage. Surfactants alter interfacial tension and modify the invasion of pores by immiscible fluids. Experiments are conducted to explore the propagation of fluid interfaces along cylindrical capillary tubes and across pore constrictions in the presence of surfactants. Measured pressure signatures reflect the interaction between surface tension, contact angle, and the pore geometry. Various instabilities occur as the interface traverses the pore constriction, consequently, measured pressure signatures differ from theoretical trends predicted from geometry, lower capillary pressures are generated in advancing wetting fronts, and jumps are prone to under-sampling. Contact angle and instabilities are responsible for pronounced differences between pressure signatures recorded during advancing and receding tests. Pressure signatures gathered with surfactant solutions suggest changes in interfacial tension at the constriction; the transient surface tension is significantly lower than the value measured in quasi-static conditions. Interface stiffening is observed during receding fronts for solutions near the critical micelle concentration. Wetting liquids tend to form plugs at pore constrictions after the invasion of a nonwetting fluid; plugs split the nonwetting fluid into isolated globules and add resistance against fluid flow.

Soil Infrastructure, Interfaces & Translocation Processes in Inner Space ("Soil-it-is": towards a road map for the constraints and crossroads of soil architecture and biophysical processes

Directory of Open Access Journals (Sweden)

L. W. de Jonge

2009-08-01

Full Text Available Soil functions and their impact on health, economy, and the environment are evident at the macro scale but determined at the micro scale, based on interactions between soil micro-architecture and the transport and transformation processes occurring in the soil infrastructure comprising pore and particle networks and at their interfaces. Soil structure formation and its resilience to disturbance are highly dynamic features affected by management (energy input, moisture (matric potential, and solids composition and complexation (organic matter and clay interactions. In this paper we review and put into perspective preliminary results of the newly started research program "Soil-it-is" on functional soil architecture. To identify and quantify biophysical constraints on soil structure changes and resilience, we claim that new approaches are needed to better interpret processes and parameters measured at the bulk soil scale and their links to the seemingly chaotic soil inner space behavior at the micro scale. As a first step, we revisit the soil matrix (solids phase and pore system (water and air phases, constituting the complementary and interactive networks of soil infrastructure. For a field-pair with contrasting soil management, we suggest new ways of data analysis on measured soil-gas transport parameters at different moisture conditions to evaluate controls of soil matrix and pore network formation. Results imply that some soils form sponge-like pore networks (mostly healthy soils in terms of agricultural and environmental functions, while other soils form pipe-like structures (agriculturally poorly functioning soils, with the difference related to both complexation of organic matter and degradation of soil structure. The recently presented Dexter et al. (2008 threshold (ratio of clay to organic carbon of 10 kg kg⁻¹ is found to be a promising constraint for a soil's ability to maintain or regenerate functional structure. Next

Numerical Simulation on Hydromechanical Coupling in Porous Media Adopting Three-Dimensional Pore-Scale Model

Science.gov (United States)

Liu, Jianjun; Song, Rui; Cui, Mengmeng

2014-01-01

A novel approach of simulating hydromechanical coupling in pore-scale models of porous media is presented in this paper. Parameters of the sandstone samples, such as the stress-strain curve, Poisson's ratio, and permeability under different pore pressure and confining pressure, are tested in laboratory scale. The micro-CT scanner is employed to scan the samples for three-dimensional images, as input to construct the model. Accordingly, four physical models possessing the same pore and rock matrix characteristics as the natural sandstones are developed. Based on the micro-CT images, the three-dimensional finite element models of both rock matrix and pore space are established by MIMICS and ICEM software platform. Navier-Stokes equation and elastic constitutive equation are used as the mathematical model for simulation. A hydromechanical coupling analysis in pore-scale finite element model of porous media is simulated by ANSYS and CFX software. Hereby, permeability of sandstone samples under different pore pressure and confining pressure has been predicted. The simulation results agree well with the benchmark data. Through reproducing its stress state underground, the prediction accuracy of the porous rock permeability in pore-scale simulation is promoted. Consequently, the effects of pore pressure and confining pressure on permeability are revealed from the microscopic view. PMID:24955384

Static and dynamic 3 dimensional studies of water in soil using computed tomographic scanning

International Nuclear Information System (INIS)

Crestana, S.; Mascarenhas, S.; Pozzi-Mucelli, R.S.

1984-03-01

Previous work of Petrovic, Siebert and Rieke demonstrated the possibility of using X-ray transmission computed tomography (CT) scanning for soil bulk density analysis in soil. We show in the present work that CT can also be used for the measurement of water content in soil. In our case we also show that CT can be applied to measure and follow dynamically the motion of water in soil in 3-dimensions. Further, more inhomogeneities of water content and motion in soil can be observed with this technique. Using a third generation CT scanner several different techniques can be applied such as differential, real time and spatial distribution scanning modes. A linear dependence was demonstrated for the Hounsfield Units (HU) used in CT and water content. The use of CT for water content and motion in soil in 3-dimensions opens new possibilities in this area of investigations. (author)

Impact of Pore-Scale Wettability on Rhizosphere Rewetting

Directory of Open Access Journals (Sweden)

Pascal Benard

2018-04-01

Full Text Available Vast amounts of water flow through a thin layer of soil around the roots, the rhizosphere, where high microbial activity takes place—an important hydrological and biological hotspot. The rhizosphere was shown to turn water repellent upon drying, which has been interpreted as the effect of mucilage secreted by roots. The effects of such rhizosphere water dynamics on plant and microbial activity are unclear. Furthermore, our understanding of the biophysical mechanisms controlling the rhizosphere water repellency remains largely speculative. Our hypothesis is that the key to describe the emergence of water repellency lies within the microscopic distribution of wettability on the pore-scale. At a critical mucilage content, a sufficient fraction of pores is blocked and the rhizosphere turns water repellent. Here we tested whether a percolation approach is capable to predict the flow behavior near the critical mucilage content. The wettability of glass beads and sand mixed with chia seed mucilage was quantified by measuring the infiltration rate of water drops. Drop infiltration was simulated using a simple pore-network model in which mucilage was distributed heterogeneously throughout the pore space with a preference for small pores. The model approach proved capable to capture the percolation nature of the process, the sudden transition from wettable to water repellent and the high variability in infiltration rates near the percolation threshold. Our study highlights the importance of pore-scale distribution of mucilage in the emergent flow behavior across the rhizosphere.

Measurement of lung volumes : usefulness of spiral CT

International Nuclear Information System (INIS)

Kang, Ho Yeong; Kwak, Byung Kook; Lee, Sang Yoon; Kim, Soo Ran; Lee, Shin Hyung; Lee, Chang Joon; Park, In Won

1996-01-01

To evaluate the usefulness of spiral CT in the measurement of lung volumes. Fifteen healthy volunteers were studied by both spirometer and spiral CT at full inspiration and expiration in order to correlated their results, including total lung capacity (TLC), vital capacity (VC) and residual volume (RV). 3-D images were reconstructed from spiral CT, and we measured lung volumes at a corresponding CT window range ; their volumes were compared with the pulmonary function test (paired t-test). The window range corresponding to TLC was from -1000HU to -150HU (p=0.279, r=0.986), and for VC from -910HU to -800HU (p=0.366, r=0.954) in full-inspiratory CT. The optimal window range for RV in full-expiratory CT was from -1000HU to -450HU (p=0.757, r=0.777), and TLC-VC in full-inspiratory CT was also calculated (p=0.843, r=0.847). Spiral CT at full inspiration can used to lung volumes such as TLC, VC and RV

Porosity and pore size distribution determination of Tumblagooda formation sandstone by X-ray microtomography

International Nuclear Information System (INIS)

Fernandes, Jaquiel S.; Appoloni, Carlos R.; Moreira, Anderson C.

2007-01-01

Microstructural parameters evaluations of reservoir rocks are very important to petroleum industry. This work presents total porosity and pore size distribution measurement of a sandstone sample from the Tumblagooda formation, collected at Kalbarri National Park in Australia. Porosity and pores size distribution were determined using X-Ray microtomography and imaging techniques. For these measurements, it was employed a micro-CT (μ-CT) Skyscan system model 1172 with conical beam, operated with a 1 mm Al filter at 80 kV and 125 μA, respectively, and a 2000 x 1048 pixels CCD camera. The sample was rotated from 0 deg to 180 deg, in step of 0.5 deg. For the considered sample, this equipment provided images with 2.9 μm spatial resolution. Six hundreds 2-D images where reconstructed with the Skyscan NRecon software, which were analyzed with the aid of Imago software, developed at the Laboratory of Porous Media and Thermophysical Properties (LMPT), Department of Mechanical Engineering, Federal University of Santa Catarina, Brazil, in association with the Brazilian software company Engineering Simulation and Scientific Software (ESSS), and Petroleo Brasileiro SA (PETROBRAS) Research and Development Center (CENPES). The determined average porosity was 11.45 ±1.53 %. Ninety five percent of the porous phase refers to pores with radius ranging from 2.9 to 85.2 μm, presenting the larger frequency (7.7 %) at 11.7 μm radius. (author)

Aging of nickel added to soils as predicted by soil pH and time.

Science.gov (United States)

Ma, Yibing; Lombi, Enzo; McLaughlin, Mike J; Oliver, Ian W; Nolan, Annette L; Oorts, Koen; Smolders, Erik

2013-08-01

Although aging processes are important in risk assessment for metals in soils, the aging of Ni added to soils has not been studied in detail. In this study, after addition of water soluble Ni to soils, the changes over time in isotopic exchangeability, total concentrations and free Ni(2+) activity in soil pore water, were investigated in 16 European soils incubated outdoors for 18 months. The results showed that after Ni addition, concentrations of Ni in soil pore water and isotopic exchangeability of Ni in soils initially decreased rapidly. This phase was followed by further decreases in the parameters measured but these occurred at slower rates. Increasing soil pH increased the rate and extent of aging reactions. Semi-mechanistic models, based on Ni precipitation/nucleation on soil surfaces and micropore diffusion, were developed and calibrated. The initial fast processes, which were attributed to precipitation/nucleation, occurred over a short time (e.g. 1h), afterwards the slow processes were most likely controlled by micropore diffusion processes. The models were validated by comparing predicted and measured Ni aging in three additional, widely differing soils aged outdoors for periods up to 15 months in different conditions. These models could be used to scale ecotoxicological data generated in short-term studies to longer aging times. Copyright © 2013 Elsevier Ltd. All rights reserved.

Automatic facial pore analysis system using multi-scale pore detection.

Science.gov (United States)

Sun, J Y; Kim, S W; Lee, S H; Choi, J E; Ko, S J

2017-08-01

As facial pore widening and its treatments have become common concerns in the beauty care field, the necessity for an objective pore-analyzing system has been increased. Conventional apparatuses lack in usability requiring strong light sources and a cumbersome photographing process, and they often yield unsatisfactory analysis results. This study was conducted to develop an image processing technique for automatic facial pore analysis. The proposed method detects facial pores using multi-scale detection and optimal scale selection scheme and then extracts pore-related features such as total area, average size, depth, and the number of pores. Facial photographs of 50 subjects were graded by two expert dermatologists, and correlation analyses between the features and clinical grading were conducted. We also compared our analysis result with those of conventional pore-analyzing devices. The number of large pores and the average pore size were highly correlated with the severity of pore enlargement. In comparison with the conventional devices, the proposed analysis system achieved better performance showing stronger correlation with the clinical grading. The proposed system is highly accurate and reliable for measuring the severity of skin pore enlargement. It can be suitably used for objective assessment of the pore tightening treatments. © 2016 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.

X-ray CT Scanning Reveals Long-Term Copper Pollution Effects on Functional Soil Structure

DEFF Research Database (Denmark)

Naveed, Muhammad; Møldrup, Per; Homstrup, Martin

Soil structure plays the main role in the ability of the soil to fulfill essential soil functions such as the root growth, rate of water infiltration and retention, transport of gaseous and chemicals/pollutants through the soil. Soil structure is a dynamic soil property and affected by various...... factors such as soil type, land use, and soil contamination. In this study, we quantified the soil structure using X-ray CT scanning and revealed the effect of a long history of Copper (Cu) pollution on it. A fallow field at Hygum Denmark provides this opportunity as it had a long history of Copper...... sulphate contamination in a gradient with Cu content varies from 21 mg kg-1 to 3837 mg kg-1. Total 20 intact soil columns (diameter of 10 cm and height of 8 cm) were sampled at five locations along the Cu-gradient from a depth of 5 to 15 cm below surface level. The soil columns were scanned at a voxel...

Trapping volumetric measurement by multidetector CT in chronic obstructive pulmonary disease: Effect of CT threshold

Energy Technology Data Exchange (ETDEWEB)

Wang, Xiaohua; Yuan, Huishu [Department of Radiology, Peking University Third Hospital, Beijing 100191 (China); Duan, Jianghui [Medical School, Peking University, Beijing 100191 (China); Du, Yipeng; Shen, Ning; He, Bei [Department of Respiration Internal Medicine, Peking University Third Hospital, Beijing 100191 (China)

2013-08-15

Purpose: The purpose of this study was to evaluate the effect of various computed tomography (CT) thresholds on trapping volumetric measurements by multidetector CT in chronic obstructive pulmonary disease (COPD).Methods: Twenty-three COPD patients were scanned with a 64-slice CT scanner in both the inspiratory and expiratory phase. CT thresholds of −950 Hu in inspiration and −950 to −890 Hu in expiration were used, after which trapping volumetric measurements were made using computer software. Trapping volume percentage (Vtrap%) under the different CT thresholds in the expiratory phase and below −950 Hu in the inspiratory phase was compared and correlated with lung function.Results: Mean Vtrap% was similar under −930 Hu in the expiratory phase and below −950 Hu in the inspiratory phase, being 13.18 ± 9.66 and 13.95 ± 6.72 (both lungs), respectively; this difference was not significant (P= 0.240). Vtrap% under −950 Hu in the inspiratory phase and below the −950 to −890 Hu threshold in the expiratory phase was moderately negatively correlated with the ratio of forced expiratory volume in one second to forced vital capacity and the measured value of forced expiratory volume in one second as a percentage of the predicted value.Conclusions: Trapping volumetric measurement with multidetector CT is a promising method for the quantification of COPD. It is important to know the effect of various CT thresholds on trapping volumetric measurements.

Characterizing, measuring, and utilizing the resolution of CT imagery for improved quantification of fine-scale features

Energy Technology Data Exchange (ETDEWEB)

Ketcham, Richard A., E-mail: ketcham@jsg.utexas.edu; Hildebrandt, Jordan

2014-04-01

Quantitative results extracted from computed tomographic (CT) data sets should be the same across resolutions and between different instruments and laboratory groups. Despite the proliferation of scanners and data processing methods and tools, and scientific studies utilizing them, relatively little emphasis has been given to ensuring that these results are comparable or reproducible. This issue is particularly pertinent when the features being imaged and measured are of the same order size as data voxels, as is often the case with fracture apertures, pore throats, and cell walls. We have created a tool that facilitates quantification of the spatial resolution of CT data via its point-spread function (PSF), in which the user draws a traverse across a sharp interface between two materials and a Gaussian PSF is fitted to the blurring across that interface. Geometric corrections account for voxel shape and the angle of the traverse to the interface, which does not need to be orthogonal. We use the tool to investigate a series of grid phantoms scanned at varying conditions and observe how the PSF varies within and between slices. The PSF increases with increasing radial distance within slices, and can increase tangentially with increasing radial distance in CT data sets acquired with relatively few projections. The PSF between CT slices is similar to that within slices when a 2-D detector is used, but is much sharper when the data are acquired one slice at a time with a collimated linear detector array. The capability described here can be used not only to calibrate processing algorithms that use deconvolution operations, but it can also help evaluate scans on a routine basis within and between CT research groups, and with respect to the features within the imagery that are being measured.

Measurement error of spiral CT volumetry: influence of low dose CT technique

International Nuclear Information System (INIS)

Chung, Myung Jin; Cho, Jae Min; Lee, Tae Gyu; Cho, Sung Bum; Kim, Seog Joon; Baik, Sang Hyun

2004-01-01

To examine the possible measurement errors of lung nodule volumetry at the various scan parameters by using a small nodule phantom. We obtained images of a nodule phantom using a spiral CT scanner. The nodule phantom was made of paraffin and urethane and its real volume was known. For the CT scanning experiments, we used three different values for both the pitch of the table feed, i.e. 1:1, 1:15 and 1:2, and the tube current, i.e. 40 mA, 80 mA and 120 mA. All of the images acquired through CT scanning were reconstructed three dimensionally and measured with volumetry software. We tested the correlation between the true volume and the measured volume for each set of parameters using linear regression analysis. For the pitches of table feed of 1:1, 1:1.5 and 1:2, the mean relative errors were 23.3%, 22.8% and 22.6%, respectively. There were perfect correlations among the three sets of measurements (Pearson's coefficient = 1.000, p< 0.001). For the tube currents of 40 mA, 80 mA and 120 mA, the mean relative errors were 22.6%, 22.6% and 22.9%, respectively. There were perfect correlations among them (Pearson's coefficient=1.000, p<0.001). In the measurement of the volume of the lung nodule using spiral CT, the measurement error was not increased in spite of the tube current being decreased or the pitch of table feed being increased

Water vapor weathering of Taurus-Littrow orange soil - A pore-structure analysis

Science.gov (United States)

Cadenhead, D. A.; Mikhail, R. S.

1975-01-01

A pore-volume analysis was performed on water vapor adsorption data previously obtained on a fresh sample of Taurus-Littrow orange soil, and the analysis was repeated on the same sample after its exposure to moist air for a period of approximately six months. The results indicate that exposure of an outgassed sample to high relative pressures of water vapor can result in the formation of substantial micropore structure, the precise amount being dependent on the sample pretreatment, particularly the outgassing temperature. Micropore formation is explained in terms of water penetration into surface defects. In contrast, long-term exposure to moist air at low relative pressures appears to reverse the process with the elimination of micropores and enlargement of mesopores possibly through surface diffusion of metastable adsorbent material. The results are considered with reference to the storage of lunar samples.

Soil components mitigate the antimicrobial effects of silver nanoparticles towards a beneficial soil bacterium, Pseudomonas chlororaphis O6

Energy Technology Data Exchange (ETDEWEB)

Calder, Alyssa J. [Department of Biological Engineering, Utah State University, Logan, UT 84322 (United States); Dimkpa, Christian O. [Department of Biological Engineering, Utah State University, Logan, UT 84322 (United States); Department of Biology, Utah State University, Logan, UT 84322 (United States); McLean, Joan E. [Utah Water Research Laboratory, Utah State University, Logan, UT 84322 (United States); Britt, David W. [Department of Biological Engineering, Utah State University, Logan, UT 84322 (United States); Johnson, William [Geology and Geophysics, University of Utah, Salt Lake City, UT 84112 (United States); Anderson, Anne J., E-mail: anne.anderson@usu.edu [Department of Biology, Utah State University, Logan, UT 84322 (United States)

2012-07-01

Silver nanoparticles (Ag NPs) are widely used for their antimicrobial activity and consequently the particles will become environmental contaminants. This study evaluated in sand and soil matrices the toxicity of 10 nm spherical Ag NPs (1 and 3 mg Ag/L) toward a beneficial soil bacterium, Pseudomonas chlororaphis O6. In sand, both NP doses resulted in loss in bacterial culturability whereas in a loam soil, no cell death was observed. Amendments of sand with clays (30% v/v kaolinite or bentonite) did not protect the bacterium when challenged with Ag NPs. However, culturability of the bacterium was maintained when the Ag NP-amended sand was mixed with soil pore water or humic acid. Imaging by atomic force microscopy revealed aggregation of single nanoparticles in water, and their embedding into background material when suspended in pore water and humic acids. Zeta potential measurements supported aggregation and surface charge modifications with pore water and humic acids. Measurement of soluble Ag in the microcosms and geochemical modeling to deduce the free ion concentration revealed bacterial culturability was governed by the predicted free Ag ion concentrations. Our study confirmed the importance of Ag NPs as a source of ions and illustrated that processes accounting for protection in soil against Ag NPs involved distinct NP- and ion-effects. Processes affecting NP bioactivity involved surface charge changes due to sorption of Ca{sup 2+} from the pore water leading to agglomeration and coating of the NPs with humic acid and other organic materials. Removal of bioactive ions included the formation of soluble Ag complexes with dissolved organic carbon and precipitation of Ag ions with chloride in pore water. We conclude that mitigation of toxicity of Ag NPs in soils towards a soil bacterium resides in several interactions that differentially involve protection from the Ag NPs or the ions they produce. - Highlights: Black-Right-Pointing-Pointer Silver nanoparticles

Soil components mitigate the antimicrobial effects of silver nanoparticles towards a beneficial soil bacterium, Pseudomonas chlororaphis O6

International Nuclear Information System (INIS)

Calder, Alyssa J.; Dimkpa, Christian O.; McLean, Joan E.; Britt, David W.; Johnson, William; Anderson, Anne J.

2012-01-01

Silver nanoparticles (Ag NPs) are widely used for their antimicrobial activity and consequently the particles will become environmental contaminants. This study evaluated in sand and soil matrices the toxicity of 10 nm spherical Ag NPs (1 and 3 mg Ag/L) toward a beneficial soil bacterium, Pseudomonas chlororaphis O6. In sand, both NP doses resulted in loss in bacterial culturability whereas in a loam soil, no cell death was observed. Amendments of sand with clays (30% v/v kaolinite or bentonite) did not protect the bacterium when challenged with Ag NPs. However, culturability of the bacterium was maintained when the Ag NP-amended sand was mixed with soil pore water or humic acid. Imaging by atomic force microscopy revealed aggregation of single nanoparticles in water, and their embedding into background material when suspended in pore water and humic acids. Zeta potential measurements supported aggregation and surface charge modifications with pore water and humic acids. Measurement of soluble Ag in the microcosms and geochemical modeling to deduce the free ion concentration revealed bacterial culturability was governed by the predicted free Ag ion concentrations. Our study confirmed the importance of Ag NPs as a source of ions and illustrated that processes accounting for protection in soil against Ag NPs involved distinct NP- and ion-effects. Processes affecting NP bioactivity involved surface charge changes due to sorption of Ca 2+ from the pore water leading to agglomeration and coating of the NPs with humic acid and other organic materials. Removal of bioactive ions included the formation of soluble Ag complexes with dissolved organic carbon and precipitation of Ag ions with chloride in pore water. We conclude that mitigation of toxicity of Ag NPs in soils towards a soil bacterium resides in several interactions that differentially involve protection from the Ag NPs or the ions they produce. - Highlights: ► Silver nanoparticles (Ag NPs) are widely used for

Pore Scale Analysis of Oil Shale/Sands Pyrolysis

Energy Technology Data Exchange (ETDEWEB)

Lin, Chen-Luh [Univ. of Utah, Salt Lake City, UT (United States); Miller, Jan [Univ. of Utah, Salt Lake City, UT (United States)

2011-03-01

There are important questions concerning the quality and volume of pore space that is created when oil shale is pyrolyzed for the purpose of producing shale oil. In this report, 1.9 cm diameter cores of Mahogany oil shale were pyrolyzed at different temperatures and heating rates. Detailed 3D imaging of core samples was done using multiscale X-ray computed tomography (CT) before and after pyrolysis to establish the pore structure. The pore structure of the unreacted material was not clear. Selected images of a core pyrolyzed at 400oC were obtained at voxel resolutions from 39 microns (Οm) to 60 nanometers (nm). Some of the pore space created during pyrolysis was clearly visible at these resolutions and it was possible to distinguish between the reaction products and the host shale rock. The pore structure deduced from the images was used in Lattice Boltzmann simulations to calculate the permeability in the pore space. The permeabilities of the pyrolyzed samples of the silicate-rich zone were on the order of millidarcies, while the permeabilities of the kerogen-rich zone after pyrolysis were very anisotropic and about four orders of magnitude higher.

Abdominal organ motion measured using 4D CT

International Nuclear Information System (INIS)

Brandner, Edward D.; Wu, Andrew; Chen, Hungcheng; Heron, Dwight; Kalnicki, Shalom; Komanduri, Krishna; Gerszten, Kristina; Burton, Steve; Ahmed, Irfan; Shou, Zhenyu

2006-01-01

Purpose: To measure respiration-induced abdominal organ motion using four-dimensional computed tomography (4D CT) scanning and to examine the organ paths. Methods and Materials: During 4D CT scanning, consecutive CT images are acquired of the patient at each couch position. Simultaneously, the patient's respiratory pattern is recorded using an external marker block taped to the patient's abdomen. This pattern is used to retrospectively organize the CT images into multiple three-dimensional images, each representing one breathing phase. These images are analyzed to measure organ motion between each phase. The displacement from end expiration is compared to a displacement limit that represents acceptable dosimetric results (5 mm). Results: The organs measured in 13 patients were the liver, spleen, and left and right kidneys. Their average superior to inferior absolute displacements were 1.3 cm for the liver, 1.3 cm for the spleen, 1.1 cm for the left kidney, and 1.3 cm for the right kidney. Although the organ paths varied among patients, 5 mm of superior to inferior displacement from end expiration resulted in less than 5 mm of displacement in the other directions for 41 of 43 organs measured. Conclusions: Four-dimensional CT scanning can accurately measure abdominal organ motion throughout respiration. This information may result in greater organ sparing and planning target volume coverage

Multiscale Pore Throat Network Reconstruction of Tight Porous Media Constrained by Mercury Intrusion Capillary Pressure and Nuclear Magnetic Resonance Measurements

Science.gov (United States)

Xu, R.; Prodanovic, M.

2017-12-01

Due to the low porosity and permeability of tight porous media, hydrocarbon productivity strongly depends on the pore structure. Effective characterization of pore/throat sizes and reconstruction of their connectivity in tight porous media remains challenging. Having a representative pore throat network, however, is valuable for calculation of other petrophysical properties such as permeability, which is time-consuming and costly to obtain by experimental measurements. Due to a wide range of length scales encountered, a combination of experimental methods is usually required to obtain a comprehensive picture of the pore-body and pore-throat size distributions. In this work, we combine mercury intrusion capillary pressure (MICP) and nuclear magnetic resonance (NMR) measurements by percolation theory to derive pore-body size distribution, following the work by Daigle et al. (2015). However, in their work, the actual pore-throat sizes and the distribution of coordination numbers are not well-defined. To compensate for that, we build a 3D unstructured two-scale pore throat network model initialized by the measured porosity and the calculated pore-body size distributions, with a tunable pore-throat size and coordination number distribution, which we further determine by matching the capillary pressure vs. saturation curve from MICP measurement, based on the fact that the mercury intrusion process is controlled by both the pore/throat size distributions and the connectivity of the pore system. We validate our model by characterizing several core samples from tight Middle East carbonate, and use the network model to predict the apparent permeability of the samples under single phase fluid flow condition. Results show that the permeability we get is in reasonable agreement with the Coreval experimental measurements. The pore throat network we get can be used to further calculate relative permeability curves and simulate multiphase flow behavior, which will provide valuable

Measuring biogeochemical heterogeneity at the micro scale in soils and sediments

DEFF Research Database (Denmark)

Pedersen, Lasse L.; Smets, Barth F.; Dechesne, Arnaud

2015-01-01

Steep physiochemical gradients and diffusive limitation associated with microscale features such as cracks and pores make soil and sediments remarkably heterogeneous environments, which is reflected on many environmentally important processes. If we are to understand and attempt to control the ec...

Pore-scale Simulation and Imaging of Multi-phase Flow and Transport in Porous Media (Invited)

Science.gov (United States)

Crawshaw, J.; Welch, N.; Daher, I.; Yang, J.; Shah, S.; Grey, F.; Boek, E.

2013-12-01

We combine multi-scale imaging and computer simulation of multi-phase flow and reactive transport in rock samples to enhance our fundamental understanding of long term CO2 storage in rock formations. The imaging techniques include Confocal Laser Scanning Microscopy (CLSM), micro-CT and medical CT scanning, with spatial resolutions ranging from sub-micron to mm respectively. First, we report a new sample preparation technique to study micro-porosity in carbonates using CLSM in 3 dimensions. Second, we use micro-CT scanning to generate high resolution 3D pore space images of carbonate and cap rock samples. In addition, we employ micro-CT to image the processes of evaporation in fractures and cap rock degradation due to exposure to CO2 flow. Third, we use medical CT scanning to image spontaneous imbibition in carbonate rock samples. Our imaging studies are complemented by computer simulations of multi-phase flow and transport, using the 3D pore space images obtained from the scanning experiments. We have developed a massively parallel lattice-Boltzmann (LB) code to calculate the single phase flow field in these pore space images. The resulting flow fields are then used to calculate hydrodynamic dispersion using a novel scheme to predict probability distributions for molecular displacements using the LB method and a streamline algorithm, modified for optimal solid boundary conditions. We calculate solute transport on pore-space images of rock cores with increasing degree of heterogeneity: a bead pack, Bentheimer sandstone and Portland carbonate. We observe that for homogeneous rock samples, such as bead packs, the displacement distribution remains Gaussian with time increasing. In the more heterogeneous rocks, on the other hand, the displacement distribution develops a stagnant part. We observe that the fraction of trapped solute increases from the beadpack (0 %) to Bentheimer sandstone (1.5 %) to Portland carbonate (8.1 %), in excellent agreement with PFG

Influence of thresholding in mass and entropy dimension of 3-D soil images

Directory of Open Access Journals (Sweden)

A. M. Tarquis

2008-11-01

Full Text Available With the advent of modern non-destructive tomography techniques, there have been many attempts to analyze 3-D pore space features mainly concentrating on soil structure. This analysis opens a challenging opportunity to develop techniques for quantifying and describe pore space properties, one of them being fractal analysis.

Undisturbed soil samples were collected from four horizons of Brazilian soil and 3-D images at 45 μm resolution. Four different threshold criteria were used to transform computed tomography (CT grey-scale imagery into binary imagery (pore/solid to estimate their mass fractal dimension (D_m and entropy dimension (D₁. Each threshold criteria had a direct influence on the porosity obtained, varying from 8 to 24% in one of the samples, and on the fractal dimensions. Linear scaling was observed over all the cube sizes, however depending on the range of cube sizes used in the analysis, D_m could vary from 3.00 to 2.20, realizing that the threshold influenced mainly the scaling in the smallest cubes (length of size from 1 to 16 voxels.

D_m and D₁ showed a logarithmic relation with the apparent porosity in the image, however, the increase of both values respect to porosity defined a characteristic feature for each horizon that can be related to soil texture and depth.

Carpal angles as measured on CT and MRI: can we simply translate radiographic measurements?

Energy Technology Data Exchange (ETDEWEB)

Tan, Stephanie; Ghumman, Simranjit S.; Moser, Thomas P. [Hopital Notre-Dame (CHUM), Department of Radiology, Centre Hospitalier de l' Universite de Montreal, Montreal, QC (Canada); Ladouceur, Martin [Research Center CHUM, Montreal, QC (Canada)

2014-12-15

To determine the reliability of carpal angles measured on CT and MRI compared to radiography and assess if these measurements are interchangeable. Our institutional ethic research committee approved this study. For this retrospective study, two independent observers measured the scapholunate (SL), capitolunate (CL), radiolunate (RL), and radioscaphoid (RS) angles on 21 sets of exams, with each set including a radiograph, CT, and MRI of the same wrist. Inter- and intra-observer agreements were evaluated with the intraclass correlation coefficient (ICC). Linear mixed models and two-way contingency tables were used to determine if the angles measured on cross-sectional modalities were significantly different from those obtained on radiography. Inter-observer agreement was strong (ICC >0.8) for all angles, except for the RL angle measured on MRI (ICC 0.68). Intra-observer agreement was also strong for all angles, except for the CL angle measured on CT (ICC 0.66). SL angles measured on CT and MRI were not statistically different from those measured on radiographs (p = 0.37 and 0.36, respectively), unlike CL, RL, and RS angles (p < 0.05). Accuracy between modalities varied between 76 and 86 % for the SL angle and ranged between 43 and 76 % for the other angles. CL, RL, and RS angles showed large intermodality variability. Therefore, their measurements on CT or MRI could potentially lead to miscategorization. Conversely, our data showing no significant difference between modalities, SL angle could be measured on CT and MRI to assess wrist instability with a lower risk of error. (orig.)

Agreement and precision of periprosthetic bone density measurements in micro-CT, single and dual energy CT.

Science.gov (United States)

Mussmann, Bo; Overgaard, Søren; Torfing, Trine; Traise, Peter; Gerke, Oke; Andersen, Poul Erik

2017-07-01

The objective of this study was to test the precision and agreement between bone mineral density measurements performed in micro CT, single and dual energy computed tomography, to determine how the keV level influences density measurements and to assess the usefulness of quantitative dual energy computed tomography as a research tool for longitudinal studies aiming to measure bone loss adjacent to total hip replacements. Samples from 10 fresh-frozen porcine femoral heads were placed in a Perspex phantom and computed tomography was performed with two acquisition modes. Bone mineral density was calculated and compared with measurements derived from micro CT. Repeated scans and dual measurements were performed in order to measure between- and within-scan precision. Mean density difference between micro CT and single energy computed tomography was 72 mg HA/cm 3 . For dual energy CT, the mean difference at 100 keV was 128 mg HA/cm 3 while the mean difference at 110-140 keV ranged from -84 to -67 mg HA/cm 3 compared with micro CT. Rescanning the samples resulted in a non-significant overall between-scan difference of 13 mg HA/cm 3 . Bland-Altman limits of agreement were wide and intraclass correlation coefficients ranged from 0.29 to 0.72, while 95% confidence intervals covered almost the full possible range. Repeating the density measurements for within-scan precision resulted in ICCs >0.99 and narrow limits of agreement. Single and dual energy quantitative CT showed excellent within-scan precision, but poor between-scan precision. No significant density differences were found in dual energy quantitative CT at keV-levels above 110 keV. © 2016 Orthopaedic Research Society. Published by Wiley Periodicals, Inc. J Orthop Res 35:1470-1477, 2017. © 2016 Orthopaedic Research Society. Published by Wiley Periodicals, Inc.

Wave-induced stresses and pore pressures near a mudline

Directory of Open Access Journals (Sweden)

Andrzej Sawicki

2008-12-01

Full Text Available Conventional methods for the determination of water-wave induced stresses inseabeds composed of granular soils are based on Biot-type models, in which the soilskeleton is treated as an elastic medium. Such methods predict effective stressesin the soil that are unacceptable from the physical point of view, as they permittensile stresses to occur near the upper surface of the seabed. Therefore, in thispaper the granular soil is assumed to behave as an elastic-ideally plastic material,with the Coulomb-Mohr yield criterion adopted to bound admissible stress states inthe seabed. The governing equations are solved numerically by a~finite differencemethod. The results of simulations, carried out for the case of time-harmonicwater waves, illustrate the depth distributions of the excess pore pressures and theeffective stresses in the seabed, and show the shapes of zones of soil in the plastic state.~In particular, the effects on the seabed behaviour of suchparameters as the degree of pore water saturation, the soil permeability, and theearth pressure coefficient, are illustrated.

Seismic soil structure interaction: analysis and centrifuge model studies

International Nuclear Information System (INIS)

Finn, W.D.L.; Ledbetter, R.H.; Beratan, L.L.

1985-01-01

A method for non-linear dynamic effective stress analysis is introduced which is applicable to soil-structure interaction problems. Full interaction including slip between structure and foundation is taken into account and the major factors are included which must be considered when computing dynamic soil response. An experimental investigation was conducted using simulated earthquake tests on centrifuged geotechnical models in order to obtain prototype response data of foundation soils carrying both surface and embedded structures and to validate the dynamic effective stress analysis. Horizontal and vertical accelerations were measured at various points on structures and in the sand foundation. Seismically-induced pore water pressure changes were also measured at various locations in the foundation. Computer plots of the data were obtained while the centrifuge was in flight and representative samples are presented. The results show clearly the pronounced effect that increasing pore water pressures have on dynamic response. It is demonstrated that a coherent picture of dynamic response of soil-structure systems is provided by dynamic effective stress non-linear analysis. Based on preliminary results, it appears that the pore water pressure effects can be predicted

Seismic soil-structure interaction: Analysis and centrifuge model studies

International Nuclear Information System (INIS)

Finn, W.D.L.; Ledbetter, R.H.; Beratan, L.L.

1986-01-01

A method for nonlinear dynamic effective stress analysis applicable to soil-structure interaction problems is introduced. Full interaction including slip between structure and foundation is taken into account and the major factors that must be considered when computing dynamic soil response are included. An experimental investigation using simulated earthquake tests on centrifuged geotechnical models was conducted to obtain prototype response data of foundation soils carrying both surface and embedded structures and to validate the dynamic effective stress analysis. The centrifuge tests were conducted in the Geotechnical Centrifuge at Cambridge University, England. Horizontal and vertical accelerations were measured at various points on structures and in the sand foundation. Seismically induced pore water pressure changes were also measured at various locations in the foundation. Computer plots of the data were obtained while the centrifuge was in flight and representative samples are presented. The results clearly show the pronounced effect of increasing pore water pressures on dynamic response. It is demonstrated that a coherent picture of dynamic response of soil-structure systems is provided by dynamic effective stress nonlinear analysis. On the basis of preliminary results, it appears that the effects of pore water pressure can be predicted. (orig.)

Water retention of repellent and subcritical repellent soils: New insights from model and experimental investigations

Science.gov (United States)

Czachor, H.; Doerr, S. H.; Lichner, L.

2010-01-01

SummarySoil organic matter can modify the surface properties of the soil mineral phase by changing the surface tension of the mineral surfaces. This modifies the soil's solid-water contact angle, which in turn would be expected to affect its water retention curve (SWRC). Here we model the impact of differences in the soil pore-water contact angle on capillarity in non-cylindrical pores by accounting for their complex pore geometry. Key outcomes from the model include that (i) available methods for measuring the Young's wetting angle on soil samples are insufficient in representing the wetting angle in the soil pore space, (ii) the wetting branch of water retention curves is strongly affected by the soil pore-water contact angle, as manifest in the wetting behavior of water repellent soils, (iii) effects for the drying branch are minimal, indicating that both wettable and water repellent soils should behave similarly, and (vi) water retention is a feature not of only wettable soils, but also soils that are in a water repellent state. These results are tested experimentally by determining drying and wetting branches for (a) 'model soil' (quartz sands with four hydrophobization levels) and (b) five field soil samples with contrasting wettability, which were used with and without the removal of the soil organic matter. The experimental results support the theoretical predictions and indicate that small changes in wetting angle can cause switches between wettable and water repellent soil behavior. This may explain the common observation that relatively small changes in soil water content can cause substantial changes in soil wettability.

Scaling Soil Microbe-Water Interactions from Pores to Ecosystems

Science.gov (United States)

Manzoni, S.; Katul, G. G.

2014-12-01

The spatial scales relevant to soil microbial activity are much finer than scales relevant to whole-ecosystem function and biogeochemical cycling. On the one hand, how to link such different scales and develop scale-aware biogeochemical and ecohydrological models remains a major challenge. On the other hand, resolving these linkages is becoming necessary for testing ecological hypotheses and resolving data-theory inconsistencies. Here, the relation between microbial respiration and soil moisture expressed in water potential is explored. Such relation mediates the water availability effects on ecosystem-level heterotrophic respiration and is of paramount importance for understanding CO2 emissions under increasingly variable rainfall regimes. Respiration has been shown to decline as the soil dries in a remarkably consistent way across climates and soil types (open triangles in Figure). Empirical models based on these respiration-moisture relations are routinely used in Earth System Models to predict moisture effects on ecosystem respiration. It has been hypothesized that this consistency in microbial respiration decline is due to breakage of water film continuity causing in turn solute diffusion limitations in dry conditions. However, this hypothesis appears to be at odds with what is known about soil hydraulic properties. Water film continuity estimated from soil water retention (SWR) measurements at the 'Darcy' scale breaks at far less negative water potential (micro-level relevant to microbial activity. Such downscaling resolves the inconsistency between respiration thresholds and hydrological thresholds. This result, together with observations of residual microbial activity well below -15 MPa (dashed back curve in Figure), lends support to the hypothesis that soil microbes are substrate-limited in dry conditions.

Ultra-filtration measurement using CT imaging technology

International Nuclear Information System (INIS)

Lu Junfeng; Lu Wenqiang

2009-01-01

As a functional unit in the hemodialysis process, dialyzer captured quite a few medical research interests since 1980s. In the design of dialyzer or in the ongoing hemodialysis process, to estimate the ultra-filtration amount of a dialyzer, the sideway loss of the running blood flow through hollow fibers or filtration channels should be measured. This further leads to the measurement of the blood flow inside the dialyzer. For this measurement, a non-invasive method is highly desired because of the high-dense bundled hollow fibers or packed channels inside the dialyzer. As non-invasive measurement tools, CT (Computed Tomography) technologies were widely used for tissue, bone, and cancerous clinical analyses etc .... Thus, in this paper, a CT system is adopted to predict the blood flow inside a hollow fiber dialyzer. In view of symmetric property of the hollow fiber dialyzer, the largest cutting plane that parallels to the cylindrical dialyzer was analyzed by the CT system dynamically. And then, a noninvasive image analysis method used to predict the ultra-filtration amount is proposed.

CT reconstruction techniques for improved accuracy of lung CT airway measurement

Energy Technology Data Exchange (ETDEWEB)

Rodriguez, A. [Department of Medical Physics, University of Wisconsin School of Medicine and Public Health, Madison, Wisconsin 53705 (United States); Ranallo, F. N. [Department of Medical Physics, University of Wisconsin School of Medicine and Public Health, Madison, Wisconsin 53705 and Department of Radiology, University of Wisconsin School of Medicine and Public Health, Madison, Wisconsin 53792 (United States); Judy, P. F. [Brigham and Women’s Hospital, Boston, Massachusetts 02115 (United States); Gierada, D. S. [Department of Radiology, Washington University, St. Louis, Missouri 63110 (United States); Fain, S. B., E-mail: sfain@wisc.edu [Department of Medical Physics, University of Wisconsin School of Medicine and Public Health, Madison, Wisconsin 53705 (United States); Department of Radiology, University of Wisconsin School of Medicine and Public Health, Madison, Wisconsin 53792 (United States); Department of Biomedical Engineering,University of Wisconsin School of Engineering, Madison, Wisconsin 53706 (United States)

2014-11-01

Purpose: To determine the impact of constrained reconstruction techniques on quantitative CT (qCT) of the lung parenchyma and airways for low x-ray radiation dose. Methods: Measurement of small airways with qCT remains a challenge, especially for low x-ray dose protocols. Images of the COPDGene quality assurance phantom (CTP698, The Phantom Laboratory, Salem, NY) were obtained using a GE discovery CT750 HD scanner for helical scans at x-ray radiation dose-equivalents ranging from 1 to 4.12 mSv (12–100 mA s current–time product). Other parameters were 40 mm collimation, 0.984 pitch, 0.5 s rotation, and 0.625 mm thickness. The phantom was sandwiched between 7.5 cm thick water attenuating phantoms for a total length of 20 cm to better simulate the scatter conditions of patient scans. Image data sets were reconstructed using STANDARD (STD), DETAIL, BONE, and EDGE algorithms for filtered back projection (FBP), 100% adaptive statistical iterative reconstruction (ASIR), and Veo reconstructions. Reduced (half) display field of view (DFOV) was used to increase sampling across airway phantom structures. Inner diameter (ID), wall area percent (WA%), and wall thickness (WT) measurements of eight airway mimicking tubes in the phantom, including a 2.5 mm ID (42.6 WA%, 0.4 mm WT), 3 mm ID (49.0 WA%, 0.6 mm WT), and 6 mm ID (49.0 WA%, 1.2 mm WT) were performed with Airway Inspector (Surgical Planning Laboratory, Brigham and Women’s Hospital, Boston, MA) using the phase congruency edge detection method. The average of individual measures at five central slices of the phantom was taken to reduce measurement error. Results: WA% measures were greatly overestimated while IDs were underestimated for the smaller airways, especially for reconstructions at full DFOV (36 cm) using the STD kernel, due to poor sampling and spatial resolution (0.7 mm pixel size). Despite low radiation dose, the ID of the 6 mm ID airway was consistently measured accurately for all methods other than STD

CT reconstruction techniques for improved accuracy of lung CT airway measurement

International Nuclear Information System (INIS)

Rodriguez, A.; Ranallo, F. N.; Judy, P. F.; Gierada, D. S.; Fain, S. B.

2014-01-01

Purpose: To determine the impact of constrained reconstruction techniques on quantitative CT (qCT) of the lung parenchyma and airways for low x-ray radiation dose. Methods: Measurement of small airways with qCT remains a challenge, especially for low x-ray dose protocols. Images of the COPDGene quality assurance phantom (CTP698, The Phantom Laboratory, Salem, NY) were obtained using a GE discovery CT750 HD scanner for helical scans at x-ray radiation dose-equivalents ranging from 1 to 4.12 mSv (12–100 mA s current–time product). Other parameters were 40 mm collimation, 0.984 pitch, 0.5 s rotation, and 0.625 mm thickness. The phantom was sandwiched between 7.5 cm thick water attenuating phantoms for a total length of 20 cm to better simulate the scatter conditions of patient scans. Image data sets were reconstructed using STANDARD (STD), DETAIL, BONE, and EDGE algorithms for filtered back projection (FBP), 100% adaptive statistical iterative reconstruction (ASIR), and Veo reconstructions. Reduced (half) display field of view (DFOV) was used to increase sampling across airway phantom structures. Inner diameter (ID), wall area percent (WA%), and wall thickness (WT) measurements of eight airway mimicking tubes in the phantom, including a 2.5 mm ID (42.6 WA%, 0.4 mm WT), 3 mm ID (49.0 WA%, 0.6 mm WT), and 6 mm ID (49.0 WA%, 1.2 mm WT) were performed with Airway Inspector (Surgical Planning Laboratory, Brigham and Women’s Hospital, Boston, MA) using the phase congruency edge detection method. The average of individual measures at five central slices of the phantom was taken to reduce measurement error. Results: WA% measures were greatly overestimated while IDs were underestimated for the smaller airways, especially for reconstructions at full DFOV (36 cm) using the STD kernel, due to poor sampling and spatial resolution (0.7 mm pixel size). Despite low radiation dose, the ID of the 6 mm ID airway was consistently measured accurately for all methods other than STD

The Effect of Heat Transfer and Polymer Concentration on Non-Newtonian Fluid from Pore-Scale Simulation of Rock X-ray Micro-CT

Directory of Open Access Journals (Sweden)

Moussa Tembely

2017-10-01

Full Text Available Most of the pore-scale imaging and simulations of non-Newtonian fluid are based on the simplifying geometry of network modeling and overlook the fluid rheology and heat transfer. In the present paper, we developed a non-isothermal and non-Newtonian numerical model of the flow properties at pore-scale by simulation of the 3D micro-CT images using a Finite Volume Method (FVM. The numerical model is based on the resolution of the momentum and energy conservation equations. Owing to an adaptive mesh generation technique and appropriate boundary conditions, rock permeability and mobility are accurately computed. A temperature and concentration-dependent power-law viscosity model in line with the experimental measurement of the fluid rheology is adopted. The model is first applied at isothermal condition to 2 benchmark samples, namely Fontainebleau sandstone and Grosmont carbonate, and is found to be in good agreement with the Lattice Boltzmann method (LBM. Finally, at non-isothermal conditions, an effective mobility is introduced that enables to perform a numerical sensitivity study to fluid rheology, heat transfer, and operating conditions. While the mobility seems to evolve linearly with polymer concentration in agreement with a derived theoretical model, the effect of the temperature seems negligible by comparison. However, a sharp contrast is found between carbonate and sandstone under the effect of a constant temperature gradient. Besides concerning the flow index and consistency factor, a master curve is derived when normalizing the mobility for both the carbonate and the sandstone.

Measurement of skeletal muscle area: Comparison of CT and MR imaging

Energy Technology Data Exchange (ETDEWEB)

Sinelnikov, Andrey, E-mail: sinelnikovas@upmc.edu [Department of Radiology, University of Pittsburgh Medical Center, Pittsburgh, PA (United States); Qu, Chuanxing [Department of Radiology, University of Pittsburgh Medical Center, Pittsburgh, PA (United States); Fetzer, David T. [Department of Radiology, University of Texas Southwestern Medical Center, Dallas, TX (United States); Pelletier, Jean-Sébastien [Department of Surgery, Jewish General Hospital, McGill University, Montreal, Quebec (Canada); Dunn, Michael A. [Department of Medicine, University of Pittsburgh Medical Center, Pittsburgh, PA (United States); Tsung, Allan [Department of Surgery, University of Pittsburgh Medical Center, Pittsburgh, PA (United States); Furlan, Alessandro [Department of Radiology, University of Pittsburgh Medical Center, Pittsburgh, PA (United States)

2016-10-15

Objective: To investigate the intra- and inter-observer agreement and correlation between CT and MR measurements of skeletal muscle area (SMA) in the abdomen. Methods: CT and MR images from twelve patients were analyzed by two blinded observers using segmentation software (MITK-3M3, Mint Medical and Slice-O-Matic, Tomovision) to quantify SMA. MR images included T1w “in-phase”, T1w “out-of-phase”, and T2w sequences. Inter- and intra-observer agreement was assessed using the intraclass correlation coefficient (ICC). Pearson correlation coefficient (r) was used to correlate measurements obtained on MR with CT. CT and MR measurements were compared with Bland-Altman plots. Results: Intra- and inter-observer agreement for SMA was high for CT and MR. For MR, the measurements on T2w images showed the highest inter-observer agreement (ICC = 0.96). CT SMA correlated closely with MR, with T2w images showing the highest correlation (r = 0.98; P < 0.01). Bland-Altman plots showed a 1.7%–3.9% bias between CT and MR measurements, lowest for T2w images. Conclusions: MR SMA measurements are reproducible and correlate closely with CT. The T2w sequence is recommended to quantify SMA on MR images.

Spatial Variability of Soil Physical Properties Obtained with Laboratory Methods and Their Relation to Field Electrical Resistivity Measurements

Science.gov (United States)

Dathe, A.; Nemes, A.; Bloem, E.; Patterson, M.; Gimenez, D.; Angyal, A.; Koestel, J. K.; Jarvis, N.

2017-12-01

Soil spatial heterogeneity plays a critical role for describing water and solute transport processes in the unsaturated zone. Although we have a sound understanding of the physical properties underlying this heterogeneity (like macropores causing preferential water flow), their quantification in a spatial context is still a challenge. To improve existing knowledge and modelling approaches we established a field experiment on an agriculturally used silty clay loam (Stagnosol) in SE Norway. Centimeter to decimeter scale heterogeneities were investigated in the field using electrical resistivity tomography (ERT) in a quasi-3D and a real 3D approach. More than 100 undisturbed soil samples were taken in the 2x1x1 m3plot investigated with 3D ERT to determine soil water retention, saturated and unsaturated hydraulic conductivities and bulk density in the laboratory. A subset of these samples was scanned at the computer tomography (CT) facility at the Swedish University of Agricultural Sciences in Uppsala, Sweden, with special emphasis on characterizing macroporosity. Results show that the ERT measurements captured the spatial distribution of bulk densities and reflected soil water contents. However, ERT could not resolve the large variation observed in saturated hydraulic conductivities from the soil samples. Saturated hydraulic conductivity was clearly related to the macroporosity visible in the CT scans obtained from the respective soil cores. Hydraulic conductivities close to saturation mainly changed with depths in the soil profile and therefore with bulk density. In conclusion, to quantify the spatial heterogeneity of saturated hydraulic conductivities scanning methods with a resolution smaller than the size of macropores have to be used. This is feasible only when the information obtained from for example CT scans of soil cores would be upscaled in a meaningful way.

Preferential flow through intact soil cores: Effects of matrix head

Energy Technology Data Exchange (ETDEWEB)

Langner, H.W.; Gaber, H.M.; Wraith, J.M.; Huwe, B.; Inskeep, W.P.

1999-12-01

Continuous soil pores may act as pathways for preferential flow depending on their size and water status (filled or drained), the latter being largely controlled by the soil matrix head (h). The literature contains a wide range of proposed minimal pore sizes that may contribute to preferential flow. The objective of this study was to examine the relationship between h (and corresponding pore sizes) and preferential solute transport in a naturally structured soil. Tracer ({sup 3}H{sub 2}O and pentafluorobenzoic acid, [PFBA]) miscible displacement experiments were performed at several h values in intact soil cores (15-cm diameter, 30-cm length) using an apparatus especially suited to maintain constant h while collecting large effluent volumes. To test for the occurrence of preferential flow, observed breakthrough curves (BTCs) were evaluated for physical nonequilibrium (PNE) using a comparison between fitted local equilibrium (PNE) and PNE models. Fitting results of the observed BTCs indicated absence of PNE in all solute transport experiments at h {le} {minus}10 cm. Experiments at h {ge} {minus}5 cm consistently exhibited PNE conditions, indicating the presence of preferential flow. These results suggest that soil pores with effective radii of 150 {micro}m and smaller (water-filled at h = {minus}10 cm) do not contribute to preferential flow. Observed pore water velocities were not indicative of the presence or absence of preferential flow conditions. Continuous measurements of soil water content ({theta}) using time domain reflectometry (TDR) revealed that at h = {minus}10 cm, <2% of the soil volume had drained.

CT measurments of cranial growth: normal subjects

International Nuclear Information System (INIS)

Hahn, F.J.; Chu, W.K.; Cheung, J.Y.

1984-01-01

Growth patterns of the cranium measured directly as head circumference have been well documented. With the availability of computed tomography (CT) , cranial dimensions can be obtained easily. The objective of this project was to establish the mean values and their normal variance of CT cranial area of subjects at different ages. Cranial area and its long and short axes were measured on CT scans for 215 neurologic patients of a wide age range who presented no evidence of abnormal growth of head size. Growth patterns of the cranial area as well as the numeric product of it linear dimensions were determined via a curve fitting process. The patterns resemble that of the head circumference growth chart, with the most rapid growth observed in the first 12 months of age and reaching full size during adolescence

Speciation and isotopic exchangeability of nickel in soil solution.

Science.gov (United States)

Nolan, Annette L; Ma, Yibing; Lombi, Enzo; McLaughlin, Mike J

2009-01-01

Knowledge of trace metal speciation in soil pore waters is important in addressing metal bioavailability and risk assessment of contaminated soils. In this study, free Ni(2+) activities were determined in pore waters of long-term Ni-contaminated soils using a Donnan dialysis membrane technique. The pore water free Ni(2+) concentration as a percentage of total soluble Ni ranged from 21 to 80% (average 53%), and the average amount of Ni bound to dissolved organic matter estimated by Windermere Humic Aqueous Model VI was < or = 17%. These data indicate that complexed forms of Ni can constitute a significant fraction of total Ni in solution. Windermere Humic Aqueous Model VI provided reasonable estimates of free Ni(2+) fractions in comparison to the measured fractions (R(2) = 0.83 with a slope of 1.0). Also, the isotopically exchangeable pools (E value) of soil Ni were measured by an isotope dilution technique using water extraction, with and without resin purification, and 0.1 mol L(-1) CaCl(2) extraction, and the isotopic exchangeability of Ni species in soil water extracts was investigated. The concentrations of isotopically non-exchangeable Ni in water extracts were <9% of total water soluble Ni concentrations for all soils. The resin E values expressed as a percentage of the total Ni concentrations in soil showed that the labile Ni pool ranged from 0.9 to 32.4% (average 12.4%) of total soil Ni. Therefore the labile Ni pool in these well-equilibrated contaminated soils appears to be relatively small in relation to total Ni concentrations.

Soil conservation measures: exercises

OpenAIRE

Figueiredo, Tomás de; Fonseca, Felícia

2009-01-01

Exercises proposed under the topic of Soil Conservation Measures addresses to the design of structural measure, namely waterways in the context of a soil conservation plan. However, to get a better insight on the actual meaning of soil loss as a resource loss, a prior exercise is proposed to students. It concerns calculations of soil loss due to sheet (interrill) erosion and to gully erosion, and allows the perception through realistic number of the impact of these mechanism...

Analyzer for measuring gas contained in the pore space of rocks

Science.gov (United States)

Kudasik, Mateusz; Skoczylas, Norbert

2017-10-01

In the present paper, the authors discussed the functioning of their own analyzer for measuring gas contained in the pore space of high strength rocks. A sample is placed inside a hermetic measuring chamber, and then undergoes impact milling as a result of colliding with the vibrating blade of a knife which is rotationally driven by a high-speed brushless electric motor. The measuring chamber is equipped with all the necessary sensors, i.e. gas, pressure, and temperature sensors. Trial tests involving the comminution of dolomite and anhydrite samples demonstrated that the constructed device is able to break up rocks into grains so fine that they are measured in single microns, and the sensors used in the construction ensure balancing of the released gas. The tests of the analyzer showed that the metrological concept behind it, together with the way it was built, make it fit for measurements of the content and composition of selected gases from the rock pore space. On the basis of the conducted tests of balancing the gases contained in the two samples, it was stated that the gas content of Sample no. 1 was (0.055  ±  0.002) cm3 g-1, and Sample no. 2 contained gas at atmospheric pressure, composed mostly of air.

Sinking/floatation of pipelines and other objects in liquefied soil under waves

DEFF Research Database (Denmark)

Sumer, B. Mutlu; Fredsøe, Jørgen; Christensen, S.

1999-01-01

, and the experiments with the structure model (a pipeline, a sphere, and a cube). In the former experiments, the pore-water pressure was measured across the soil depth. The pore-water pressure built up, as the waves progressed. The soil was liquefied for wave heights larger than a critical value. Regarding......This paper presents the results of an experimental study where the sinking and floatation of a pipeline and other objects (namely, a sphere and a cube) in a silt bed was investigated. The bed was exposed to progressive waves. Two kinds of experiments were made: The undisturbed-flow experiments...... the experiments with the structure model, the displacement of the structure (sinking or floatation) was measured simultaneously with the pore-water pressure. The influence of various parameters (such as the initial position of the object, the specific gravity, the soil layer thickness, and the wave height...

Relaxometry in soil science

Science.gov (United States)

Schaumann, G. E.; Jaeger, F.; Bayer, J. V.

2009-04-01

-destructive way. Recent studies investigated wetting and swelling processes in soil samples, as well as the formation of microbial biofilms in soil the formation. This contribution gives an overview of current applications and the potential of NMR relaxometry in soil science with special emphasis on proton NMR relaxometry. References Bird, N.R.A., Preston, A.R., Randall, E.W., Whalley, W.R. & Whitmore, A.P. 2005. Measurement of the size distribution of water-filled pores at different matric potentials by stray field nuclear magnetic resonance. 56, 135-143. Bryar, T.R. & Knight, R.J. 2002. Sensitivity of Nuclear Magnetic Resonance Relaxation Measurements to Changing Soil Redox Conditions. Geophysical Research Letters, 29, 50/1-50/4. Conte, P., Spaccini, R. & Piccolo, A. 2006. Advanced CPMAS-13C NMR techniques for molecular characterization of size-separated fractions from a soil humic acid. Analytical and Bioanalytical Chemistry, 386, 382-390. Gunasekara, A.S., Simpson, M.I. & Xing, B. 2003. Identification and characterization of sorption domains in soil organic matter using strucuturally modified humic acids. Environmental Science & Technology, 37, 852-858. Jaeger, F., Grohmann, E., Boeckelmann, U. & Schaumann, G.E. 2006. Microbial effects on 1H NMR Relaxometry in soil samples and glass bead reactors. In Humic Substances - Linking Structure to Functions. Proceedings of the 13th Meeting of the International Humic Substances Societyin Karlsruhe eds. F.H. Frimmel & G. Abbt-Braun), pp. 929-932. Universität Karlsruhe, Karlsruhe. Hurraß, J. & Schaumann, G.E. 2007. Hydration kinetics of wettable and water repellent soil samples. Soil Science Society of America Journal, 71, 280-288. Jaeger, F., Grohmann, E. & Schaumann, G.E. 2006. 1H NMR Relaxometry in natural humous soil samples: Insights in microbial effects on relaxation time distributions. Plant and Soil, 280, 209-222. Jaeger, F., Rudolph, N., Lang, F. & Schaumann, G.E. 2008. Effects of soil solution's constituents on proton NMR

Ocular volume measured by CT scans

International Nuclear Information System (INIS)

Hahn, F.J.; Wei-Kom Chu

1984-01-01

Newer CT scans have greatly enhanced oculometric research and made it possible to measure ocular dimensions. With these measurements, ocular volume can be more accurately estimated to understand its relationship with age and sex. One hundred CT orbit scans with presumed normal eyes were used for the data base. The mean values and normal variations of ocular volumes at various ages in both sexes are presented. Rapid growth of the eyeball was noted during the first 24 months of age. It reached its peak between the ages of 18 and 30 years of age, after which there was a reduction. Results may be of help in recognizing eye abnormalities such as microophthalmus and macrophthalmia. (orig.)

Comparison of air space measurement imaged by CT, small-animal CT, and hyperpolarized Xe MRI

Science.gov (United States)

Madani, Aniseh; White, Steven; Santyr, Giles; Cunningham, Ian

2005-04-01

Lung disease is the third leading cause of death in the western world. Lung air volume measurements are thought to be early indicators of lung disease and markers in pharmaceutical research. The purpose of this work is to develop a lung phantom for assessing and comparing the quantitative accuracy of hyperpolarized xenon 129 magnetic resonance imaging (HP 129Xe MRI), conventional computed tomography (HRCT), and highresolution small-animal CT (μCT) in measuring lung gas volumes. We developed a lung phantom consisting of solid cellulose acetate spheres (1, 2, 3, 4 and 5 mm diameter) uniformly packed in circulated air or HP 129Xe gas. Air volume is estimated based on simple thresholding algorithm. Truth is calculated from the sphere diameters and validated using μCT. While this phantom is not anthropomorphic, it enables us to directly measure air space volume and compare these imaging methods as a function of sphere diameter for the first time. HP 129Xe MRI requires partial volume analysis to distinguish regions with and without 129Xe gas and results are within %5 of truth but settling of the heavy 129Xe gas complicates this analysis. Conventional CT demonstrated partial-volume artifacts for the 1mm spheres. μCT gives the most accurate air-volume results. Conventional CT and HP 129Xe MRI give similar results although non-uniform densities of 129Xe require more sophisticated algorithms than simple thresholding. The threshold required to give the true air volume in both HRCT and μCT, varies with sphere diameters calling into question the validity of thresholding method.

Which soil tillage is better in terms of the soil organic matter and soil structure changes?

Directory of Open Access Journals (Sweden)

VLADIMÍR ŠIMANSKÝ

2016-06-01

Full Text Available This study was performed to evaluate effects of minimum (MT and conventional tillage (CT on soil organic matter and soil structure in haplic Chernozems and mollic Fluvisols. The content of soil organic carbon (Corg as well as parameters of stability and vulnerability of soil structure were quantified. The results showed that soil type had statistically significant influence on Corg. In haplic Chernozems the Corg content near the surface (0–0.1 m was significantly higher under MT (by 6% compared to CT, however, in layer 0–0.3 m under CT the average Corg content was by 16% higher than under MT. In mollic Fulvisols under MT, the average Corg content (17.5 ± 5.4 g*kg-1 was significantly less for the 0–0.3 m layer than the CT (22.7 ± 0.4 g*kg-1. In Chernozems, total content of water-stable micro-aggregates (WSAmi was higher in MT (90.8% than in CT (69.5%. In mollic Fluvisols, the average content of WSAmi was higher in CT (62.5% than in MT (53.2%. The low aggregate stability and the high structure vulnerability were reflected also due to the high contents of WSAmi in both soils. The stability of aggregates was a higher in mollic Fluvisols than in haplic Chernozems. In haplic Chernozems, better soil structure stability was under CT than MT, on the other hand, in mollic Fluvisols, the average value of coefficient of aggregate stability was lower by 32% in CT than MT.

Prediction of the soil water retention curve for structured soil from saturation to oven-dryness

DEFF Research Database (Denmark)

Karup, Dan; Møldrup, Per; Tuller, Markus

2017-01-01

. Independently measured SWRCs for 171 undisturbed soil samples with organic matter contents that ranged from 3 to 14% were used for model validation. The results indicate that consideration of the silt and organic matter fractions, in addition to the clay fraction, improved predictions for the dry-end SWRC......The soil water retention curve (SWRC) is the most fundamental soil hydraulic function required for modelling soil–plant–atmospheric water flow and transport processes. The SWRC is intimately linked to the distribution of the size of pores, the composition of the solid phase and the soil specific...... surface area. Detailed measurement of the SWRC is impractical in many cases because of the excessively long equilibration times inherent to most standard methods, especially for fine textured soil. Consequently, it is more efficient to predict the SWRCbased on easy-to-measure basic soil properties...

Environmental and management impacts on temporal variability of soil hydraulic properties

Science.gov (United States)

Bodner, G.; Scholl, P.; Loiskandl, W.; Kaul, H.-P.

2012-04-01

Soil hydraulic properties underlie temporal changes caused by different natural and management factors. Rainfall intensity, wet-dry cycles, freeze-thaw cycles, tillage and plant effects are potential drivers of the temporal variability. For agricultural purposes it is important to determine the possibility of targeted influence via management. In no-till systems e.g. root induced soil loosening (biopores) is essential to counteract natural soil densification by settling. The present work studies two years of temporal evolution of soil hydraulic properties in a no-till crop rotation (durum wheat-field pea) with two cover crops (mustard and rye) having different root systems (taproot vs. fibrous roots) as well as a bare soil control. Soil hydraulic properties such as near-saturated hydraulic conductivity, flow weighted pore radius, pore number and macroporosity are derived from measurements using a tension infiltrometer. The temporal dynamics are then analysed in terms of potential driving forces. Our results revealed significant temporal changes of hydraulic conductivity. When approaching saturation, spatial variability tended to dominate over the temporal evolution. Changes in near-saturated hydraulic conductivity were mainly a result of changing pore number, while the flow weighted mean pore radius showed less temporal dynamic in the no-till system. Macroporosity in the measured range of 0 to -10 cm pressure head ranged from 1.99e-4 to 8.96e-6 m3m-3. The different plant coverage revealed only minor influences on the observed system dynamics. Mustard increased slightly the flow weighted mean pore radius, being 0.090 mm in mustard compared to 0.085 mm in bare soil and 0.084 mm in rye. Still pore radius changes were of minor importance for the overall temporal dynamics. Rainfall was detected as major driving force of the temporal evolution of structural soil hydraulic properties at the site. Soil hydraulic conductivity in the slightly unsaturated range (-7 cm to -10

Porous media fluid transport and pore structure

CERN Document Server

Dullien, F A L

1992-01-01

This book examines the relationship between transport properties and pore structure of porous material. Models of pore structure are presented with a discussion of how such models can be used to predict the transport properties of porous media. Portions of the book are devoted to interpretations of experimental results in this area and directions for future research. Practical applications are given where applicable, and are expected to be useful for a large number of different fields, including reservoir engineering, geology, hydrogeology, soil science, chemical process engineering, biomedica

Measuring Static and Dynamic Properties of Frozen Silty Soils

Energy Technology Data Exchange (ETDEWEB)

Furnish, M.D.

1998-09-30

A mechanical characterization of frozen silty soils has been conducted to support computer modeling of penetrators. The soils were obtained from the Eilson AFB (Alaska) vicinity. Quasi-static testing with a multiaxial system in a cold room and intermediate strain rate testing with a split Hopkinson pressure bar were conducted. Maximum stresses achieved were slightly above 1 GPa, apparently limiting the observed behavior primarily to elastic compression and pore crushing phenomena. Lower temperatures seem to increase the strength of the material markedly, although not by a simple factor. Lower temperatures and higher strain rates increase the apparent Young's and bulk moduli as well (an increase of {approximately} a factor of two is observed for strain rate increasing from 0.001 s{sup {minus}1} to 800 s{sup {minus}1}). The strength also depends strongly on strain rate. Increasing the strain rate from 0.001 {sup {minus}1} to 0.07 {sup {minus}1} increases the strength by a factor of five to ten (to values of order 1 GPa). However,only a small increase in strength is seen as strain rate is increased to {approximately} 10{sup 2}--10{sup 3} s{sup {minus}1}. The reliability of the strength measurements at strain rates< 1 s{sup {minus}1} is decreased due to details of the experimental geometry, although general trends are observable. A recipe is provided for a simulant soil based on bentonite, sand, clay-rich soil and water to fit the {approximately} 6% air-filled porosity, density and water content of the Alaska soils, based on benchtop mixing and jacketed compression testing of candidate mixes.

Microscope image based fully automated stomata detection and pore measurement method for grapevines

Directory of Open Access Journals (Sweden)

Hiranya Jayakody

2017-11-01

Full Text Available Abstract Background Stomatal behavior in grapevines has been identified as a good indicator of the water stress level and overall health of the plant. Microscope images are often used to analyze stomatal behavior in plants. However, most of the current approaches involve manual measurement of stomatal features. The main aim of this research is to develop a fully automated stomata detection and pore measurement method for grapevines, taking microscope images as the input. The proposed approach, which employs machine learning and image processing techniques, can outperform available manual and semi-automatic methods used to identify and estimate stomatal morphological features. Results First, a cascade object detection learning algorithm is developed to correctly identify multiple stomata in a large microscopic image. Once the regions of interest which contain stomata are identified and extracted, a combination of image processing techniques are applied to estimate the pore dimensions of the stomata. The stomata detection approach was compared with an existing fully automated template matching technique and a semi-automatic maximum stable extremal regions approach, with the proposed method clearly surpassing the performance of the existing techniques with a precision of 91.68% and an F1-score of 0.85. Next, the morphological features of the detected stomata were measured. Contrary to existing approaches, the proposed image segmentation and skeletonization method allows us to estimate the pore dimensions even in cases where the stomatal pore boundary is only partially visible in the microscope image. A test conducted using 1267 images of stomata showed that the segmentation and skeletonization approach was able to correctly identify the stoma opening 86.27% of the time. Further comparisons made with manually traced stoma openings indicated that the proposed method is able to estimate stomata morphological features with accuracies of 89.03% for area

Elementary representative sizes of soil attributes via attenuation of gamma rays and computerized tomography

International Nuclear Information System (INIS)

Borges, Jaqueline Aparecida Ribaski

2015-01-01

In this study, the Computed Tomography (CT) and gamma-ray attenuation (GRA) techniques were used in the investigation of representative sample sizes for attributes related to soil structure. First of all, the representative elementary length (REL) for experimental measurements of soil mass attenuation coefficient (μes), of samples from a sandy and a clayey soil, was analyzed. The study was conducted with two radioactive sources ( 241 Am and 137 Cs), three collimators (2 - 4 mm diameters), and 14 thickness (x) samples (2-5 cm). From these analyzes, it was possible to identify an ideal thickness range for each of the studied sources (2-4 cm and 12-15 cm for the sources of 241 Am and 137 Cs, respectively). The application of such results in representative elementary area evaluations, in clayey soil clods via CT, indicated that experimental soil mass attenuation coefficient average values obtained for x>4 cm and source 241 Am might induce the use of samples which are not large enough for soil bulk density evaluations. Subsequently, μCT images with a total volume of 39×39×33 mm 3 and spatial resolution of 60 μm were used for macroporous system morphological characterization of a Rhodic Ferralsol with clayey texture, under no-till (NT) and conventional till (CT) systems. Attributes as macroporosity (MAP), number of macropores (NMAP), tortuosity (τ) and connectivity (C) of the pores were assessed. The C degree was estimated based on the Euler-Poincare characteristic (EPC). Once 3D images enable the study of these attributes in different sample volumes, the proposed study is ideal for the analysis of representative elementary volume (REV). Usually, the selection of subvolumes for REV analysis occurs concentrically to a small volume or in adjacent positions. Here, we introduced a new method for selecting the positions of subvolumes, which are randomly chosen within the total image volume (random selection). It was observed that higher fluctuations in amplitude of each

Structural Measures to Track the Evolution of SNOMED CT Hierarchies

Science.gov (United States)

Wei, Duo; Gu, Huanying (Helen); Perl, Yehoshua; Halper, Michael; Ochs, Christopher; Elhanan, Gai; Chen, Yan

2015-01-01

The Systematized Nomenclature of Medicine Clinical Terms (SNOMED CT) is an extensive reference terminology with an attendant amount of complexity. It has been updated continuously and revisions have been released semi-annually to meet users’ needs and to reflect the results of quality assurance (QA) activities. Two measures based on structural features are proposed to track the effects of both natural terminology growth and QA activities based on aspects of the complexity of SNOMED CT. These two measures, called the structural density measure and accumulated structural measure, are derived based on two abstraction networks, the area taxonomy and the partial-area taxonomy. The measures derive from attribute relationship distributions and various concept groupings that are associated with the abstraction networks. They are used to track the trends in the complexity of structures as SNOMED CT changes over time. The measures were calculated for consecutive releases of five SNOMED CT hierarchies, including the Specimen hierarchy. The structural density measure shows that natural growth tends to move a hierarchy’s structure toward a more complex state, whereas the accumulated structural measure shows that QA processes tend to move a hierarchy’s structure toward a less complex state. It is also observed that both the structural density and accumulated structural measures are useful tools to track the evolution of an entire SNOMED CT hierarchy and reveal internal concept migration within it. PMID:26260003

Intra-abdominal fat area measurement using chest CT data

International Nuclear Information System (INIS)

Moriya, Hiroshi; Midorikawa, Shigeo; Hashimoto, Kouji; Ishii, Akira; Saitou, Kumi; Andou, Tomonori; Kitamura, Naoko; Sakuma, Koutarou

2007-01-01

Intra-abdominal fat obesity, which is linked with the metabolic syndrome, is usually characterized by measuring intra-abdominal fat area at the umbilical level of abdominal CT scan. In recent year, the chances of chest CT scanning are increased, as lung cancer screening survey or individual medical examination. Thus, we presented a method of measuring the areas of intra-abdominal fat and subcutaneous fat at the lower slice of chest CT scan. Fat areas found with this method were significantly correlated with those obtained at the umbilical level. (author)

Investigating the pore-water chemistry effects on the volume change behaviour of Boom clay

Science.gov (United States)

Deng, Y. F.; Cui, Y. J.; Tang, A. M.; Nguyen, X. P.; Li, X. L.; Van Geet, M.

The Essen site has been chosen as an alternative site for nuclear waste disposal in Belgium. The soil formation involved at this site is the same as at Mol site: Boom clay. However, owing to its geographical situation closer to the sea, Boom clay at Essen presents a pore water salinity 4-5 times higher than Boom clay at Mol. This study aims at studying the effects of pore water salinity on the hydro-mechanical behaviour of Boom clay. Specific oedometer cells were used allowing “flushing” the pore water in soil specimen by synthetic pore water or distilled water. The synthetic pore water used was prepared with the chemistry as that for the site water: 5.037 g/L for core Ess83 and 5.578 g/L for core Ess96. Mechanical loading was then carried out on the soil specimen after flushing. The results show that water salinity effect on the liquid limit is negligible. The saturation or pore water replacement under the in situ effective stress of 2.4 MPa does not induce significant volume change. For Ess83, hydro-mechanical behaviour was found to be slightly influenced by the water salinity; on the contrary, no obvious effect was identified on the hydro-mechanical behaviour of Ess96. This can be attributed to the higher smectite content in Ess83 than in Ess96.

Universal Spatial Correlation Functions for Describing and Reconstructing Soil Microstructure

Science.gov (United States)

Skvortsova, Elena B.; Mallants, Dirk

2015-01-01

Structural features of porous materials such as soil define the majority of its physical properties, including water infiltration and redistribution, multi-phase flow (e.g. simultaneous water/air flow, or gas exchange between biologically active soil root zone and atmosphere) and solute transport. To characterize soil microstructure, conventional soil science uses such metrics as pore size and pore-size distributions and thin section-derived morphological indicators. However, these descriptors provide only limited amount of information about the complex arrangement of soil structure and have limited capability to reconstruct structural features or predict physical properties. We introduce three different spatial correlation functions as a comprehensive tool to characterize soil microstructure: 1) two-point probability functions, 2) linear functions, and 3) two-point cluster functions. This novel approach was tested on thin-sections (2.21×2.21 cm2) representing eight soils with different pore space configurations. The two-point probability and linear correlation functions were subsequently used as a part of simulated annealing optimization procedures to reconstruct soil structure. Comparison of original and reconstructed images was based on morphological characteristics, cluster correlation functions, total number of pores and pore-size distribution. Results showed excellent agreement for soils with isolated pores, but relatively poor correspondence for soils exhibiting dual-porosity features (i.e. superposition of pores and micro-cracks). Insufficient information content in the correlation function sets used for reconstruction may have contributed to the observed discrepancies. Improved reconstructions may be obtained by adding cluster and other correlation functions into reconstruction sets. Correlation functions and the associated stochastic reconstruction algorithms introduced here are universally applicable in soil science, such as for soil classification

Spectral element modelling of seismic wave propagation in visco-elastoplastic media including excess-pore pressure development

Science.gov (United States)

Oral, Elif; Gélis, Céline; Bonilla, Luis Fabián; Delavaud, Elise

2017-12-01

Numerical modelling of seismic wave propagation, considering soil nonlinearity, has become a major topic in seismic hazard studies when strong shaking is involved under particular soil conditions. Indeed, when strong ground motion propagates in saturated soils, pore pressure is another important parameter to take into account when successive phases of contractive and dilatant soil behaviour are expected. Here, we model 1-D seismic wave propagation in linear and nonlinear media using the spectral element numerical method. The study uses a three-component (3C) nonlinear rheology and includes pore-pressure excess. The 1-D-3C model is used to study the 1987 Superstition Hills earthquake (ML 6.6), which was recorded at the Wildlife Refuge Liquefaction Array, USA. The data of this event present strong soil nonlinearity involving pore-pressure effects. The ground motion is numerically modelled for different assumptions on soil rheology and input motion (1C versus 3C), using the recorded borehole signals as input motion. The computed acceleration-time histories show low-frequency amplification and strong high-frequency damping due to the development of pore pressure in one of the soil layers. Furthermore, the soil is found to be more nonlinear and more dilatant under triaxial loading compared to the classical 1C analysis, and significant differences in surface displacements are observed between the 1C and 3C approaches. This study contributes to identify and understand the dominant phenomena occurring in superficial layers, depending on local soil properties and input motions, conditions relevant for site-specific studies.

Measurement error in CT assessment of appendix diameter

Energy Technology Data Exchange (ETDEWEB)

Trout, Andrew T.; Towbin, Alexander J. [Cincinnati Children' s Hospital Medical Center, Department of Radiology, MLC 5031, Cincinnati, OH (United States); Zhang, Bin [Cincinnati Children' s Hospital Medical Center, Department of Biostatistics and Epidemiology, Cincinnati, OH (United States)

2016-12-15

Appendiceal diameter continues to be cited as an important criterion for diagnosis of appendicitis by computed tomography (CT). To assess sources of error and variability in appendiceal diameter measurements by CT. In this institutional review board-approved review of imaging and medical records, we reviewed CTs performed in children <18 years of age between Jan. 1 and Dec. 31, 2010. Appendiceal diameter was measured in the axial and coronal planes by two reviewers (R1, R2). One year later, 10% of cases were remeasured. For patients who had multiple CTs, serial measurements were made to assess within patient variability. Measurement differences between planes, within and between reviewers, within patients and between CT and pathological measurements were assessed using correlation coefficients and paired t-tests. Six hundred thirty-one CTs performed in 519 patients (mean age: 10.9 ± 4.9 years, 50.8% female) were reviewed. Axial and coronal measurements were strongly correlated (r = 0.92-0.94, P < 0.0001) with coronal plane measurements significantly larger (P < 0.0001). Measurements were strongly correlated between reviewers (r = 0.89-0.9, P < 0.0001) but differed significantly in both planes (axial: +0.2 mm, P=0.003; coronal: +0.1 mm, P=0.007). Repeat measurements were significantly different for one reviewer only in the axial plane (0.3 mm difference, P<0.05). Within patients imaged multiple times, measured appendix diameters differed significantly in the axial plane for both reviewers (R1: 0.5 mm, P = 0.031; R2: 0.7 mm, P = 0.022). Multiple potential sources of measurement error raise concern about the use of rigid diameter cutoffs for the diagnosis of acute appendicitis by CT. (orig.)

Percolation theory and its application for interpretation of soil water retention curves

International Nuclear Information System (INIS)

Kodesova, R.

2004-01-01

The soil porous system has traditionally been deduced from the soil-water retention curve with the assumption of homogeneity and free accessibility of pores, defined as capillary tubes, from the sink/source of water. But real soil fabric is mostly characterized by aggregates. In this case, the soil porous system cannot be modeled as a homogeneous one. To examine the differences between homogeneous and heterogeneous soil porous systems, we studied two types of soils: sandy soil and coarse sandy soil. We applied image processing filters and the ARC/INFO Grid module to analyze pore sizes in both soils from their electron microscope images taken at two different magnifications. We used the resulting pore-size distribution data to generate 3-D porous media consisting of pores and throats. The homogeneous pore structure was created as a mono-modal pore-throat network with one pore-size distribution. The heterogeneous pore structure was designed as a bi-modal pore-throat network with two pore-size distributions, where the pore sizes were hierarchically arranged in the nodes of the network. We applied the percolation model to simulate water and air displacement in these networks. The distribution of water in the nodes of the networks was studied increasing/decreasing steps of pressure head and the drainage and wetting branches of the retention curves were evaluated. The soil-water retention curves modeled for the mono-modal and bi-modal porous systems had different characters. The simulated shape of the retention curve in the mono-modal case was close to the step-like form of a retention curve characteristic of unstructured soil. The shape of the simulated retention curve in the bi-modal case was smoother, more gradual, and closer to the shape of the retention curve of a real, structured soil. (author)

Electroosmotic transport in fine grained sediments with respect to pore throats

Energy Technology Data Exchange (ETDEWEB)

Krauss, H.; Zorn, R.; Haus, R.; Czurda, K. [Dept. of Applied Geology, Univ. Karlsruhe (Germany)

2001-07-01

Electroosmotic experiments were performed with two different fine grained soils, which were consolidated in different ways. The electroosmotic permeability was calculated using the transported volume of water under a dc electric field. In addition to the pH-values prior and after the experiments near the anode and cathode the dominating pore throat-diameters of the samples were analysed by mercury porosimetry. The electroosmotic permeability can be correlated with the dominating pore throat-diameter. Not only chemical parameters like zeta-potential or ion-concentration but also the kind and structure of the soil particles characterize electroosmotic transport. (orig.)

Linking air and water transport in intact soils to macro-porosity by combining laboratory measurements and X-ray Computed Tomography

DEFF Research Database (Denmark)

Katuwal, Sheela; Norgaard, Trine; Møldrup, Per

-porosity (R2 = 0.80 for air permeability: R2= 0.61 for 5% arrival time) and macro-porosity of the restricting layer (R2=0.83 for air permeability: R2= 0.71 for 5% arrival time) over air-filled porosity and all the correlations were positive. The high positive correlation these air and water transport...... functions with macro-porosity stressed the importance of continuity and tortuosity of pores in air, water and solute flow and transport through the soils. Negative correlations of air permeability, 5% arrival time of tracer and macro-porosity were obtained with bulk density whereas with other soil physical......With an objective to link the hydraulic properties of soil with the soil structural properties, air permeability and 5% arrival time of a conservative tracer was measured for large undisturbed soil columns from the same agricultural field. The same soil columns were scanned with a medical scanner...

The use of 36Cl diffusion to asses changes in pore geometry of allophane soils resulting from drying

International Nuclear Information System (INIS)

Holder, G.D.

1984-01-01

The apparent diffusion coefficient of 36 Cl is used to assess pore geometric changes in allophane soil resulting from drying. The diffusion method is based on the boundary condition of a planar source diffusing into an infinite medium. The extent of structural changes accompanying drying was indicated by changes in slope of a plot between geometric and interaction factors versus volumetric moisture content. Structural change was least for freeze drying to be followed by a larger but equal change for air and oven drying. (M.A.C.) [pt

Gas diffusion, non-Darcy air permeability, and computed tomography images of a clay subsoil affected by compaction

DEFF Research Database (Denmark)

Schjønning, Per; Lamandé, Mathieu; Berisso, Feto Esimo

2013-01-01

Soil productivity and other soil functions are dependent on processes in the untilled subsoil. Undisturbed soil cores were collected at the 0.3- to 0.4-m depth from a heavy clay soil in Finland subjected to a single heavy traffic event by agricultural machinery three decades before sampling....... Untrafficked control plots were used as a reference. Computed tomography (CT) scanning was performed on soil cores at a field-sampled field capacity water content. Gas diffusion and air permeability were measured when the soil cores were drained to −1000 hPa matric potential (air permeability also at −100...... and −300 hPa). The air-filled pore space was measured with an air pycnometer and also calculated from mass balance and CT data. Gas diffusion and air permeability were also measured on a straight model tube and on autoclaved aerated concrete. The compaction treatment had not influenced soil total porosity...

Measurement of time delay for a prospectively gated CT simulator.

Science.gov (United States)

Goharian, M; Khan, R F H

2010-04-01

For the management of mobile tumors, respiratory gating is the ideal option, both during imaging and during therapy. The major advantage of respiratory gating during imaging is that it is possible to create a single artifact-free CT data-set during a selected phase of the patient's breathing cycle. The purpose of the present work is to present a simple technique to measure the time delay during acquisition of a prospectively gated CT. The time delay of a Philips Brilliance BigBore (Philips Medical Systems, Madison, WI) scanner attached to a Varian Real-Time Position Management (RPM) system (Varian Medical Systems, Palo Alto, CA) was measured. Two methods were used to measure the CT time delay: using a motion phantom and using a recorded data file from the RPM system. In the first technique, a rotating wheel phantom was altered by placing two plastic balls on its axis and rim, respectively. For a desired gate, the relative positions of the balls were measured from the acquired CT data and converted into corresponding phases. Phase difference was calculated between the measured phases and the desired phases. Using period of motion, the phase difference was converted into time delay. The Varian RPM system provides an external breathing signal; it also records transistor-transistor logic (TTL) 'X-Ray ON' status signal from the CT scanner in a text file. The TTL 'X-Ray ON' indicates the start of CT image acquisition. Thus, knowledge of the start time of CT acquisition, combined with the real-time phase and amplitude data from the external respiratory signal, provides time-stamping of all images in an axial CT scan. The TTL signal with time-stamp was used to calculate when (during the breathing cycle) a slice was recorded. Using the two approaches, the time delay between the prospective gating signal and CT simulator has been determined to be 367 +/- 40 ms. The delay requires corrections both at image acquisition and while setting gates for the treatment delivery

In-situ Mass Distribution Quotient (iMDQ) - A New Factor to Compare Bioavailability of Pesticides in Soils?

Science.gov (United States)

Schroll, R.; Folberth, C.; Scherb, H.; Suhadolc, M.; Munch, J. C.

2009-04-01

Aim of this work was the development of a new non-biological factor to determine microbial in-situ bioavailability of chemicals in soils. Pesticide residues were extracted from ten highly different agricultural soils that had been incubated with the 14C-herbicide isoproturon (IPU) under comparable soil conditions (water tension - 15 kPa; soil density 1.3 g cm 3). Two different pesticide extraction approaches were compared: (i) 14C-Pesticide residues were measured in the pore water (PW) which was extracted from soil by centrifugation; (ii) 14C-Pesticide residues were extracted from soil samples with an excess of water (EEW). We introduce the pesticide's in-situ mass distribution quotient (iMDQ) as a measure for pesticide bioavailability, which is calculated as a quotient of adsorbed and dissolved chemical amounts for both approaches (iMDQPW, iMDQEEW). Pesticide mineralization in soils served as a reference for real microbial availability. A highly significant correlation between iMDQPW and mineralization showed that pore water extraction is adequate to assess IPU bioavailability. In contrast, no correlation exists between IPU mineralization and its extractability from soil with an excess of water. Therefore, it can be concluded that soil equilibration at comparable conditions and subsequent pore water extraction is vital for a isoproturon bioavailability ranking of soils.

Untangle soil-water-mucilage interactions: 1H NMR Relaxometry is lifting the veil

Science.gov (United States)

Brax, Mathilde; Buchmann, Christian; Schaumann, Gabriele Ellen

2017-04-01

Mucilage is mainly produced at the root tips and has a high water holding capacity derived from highly hydrophilic gel-forming substances. The objective of the MUCILAGE project is to understand the mechanistic role of mucilage for the regulation of water supply for plants. Our subproject investigates the chemical and physical properties of mucilage as pure gel and mixed with soil. 1H-NMR Relaxometry and PFG NMR represent non-intrusive powerful methods for soil scientific research by allowing quantification of the water distribution as well as monitoring of the water mobility in soil pores and gel phases.Relaxation of gel water differs from the one of pure water due to additional interactions with the gel matrix. Mucilage in soil leads to a hierarchical pore structure, consisting of the polymeric biohydrogel network surrounded by the surface of soil particles. The two types of relaxation rates 1/T1 and 1/T2 measured with 1H-NMR relaxometry refer to different relaxation mechanisms of water, while PFG-NMR measures the water self-diffusion coefficient. The objective of our study is to distinguish in situ water in gel from pore water in a simplified soil system, and to determine how the "gel effect" affects both relaxation rates and the water self-diffusion coefficient in porous systems. We demonstrate how the mucilage concentration and the soil solution alter the properties of water in the respective gel phases and pore systems in model soils. To distinguish gel-inherent processes from classical processes, we investigated the variations of the water mobility in pure chia mucilage under different conditions by using 1H-NMR relaxometry and PFG NMR. Using model soils, the signals coming from pore water and gel water were differentiated. We combined the equations describing 1H-NMR relaxation in porous systems and our experimental results, to explain how the presence of gel in soil affects 1H-NMR relaxation. Out of this knowledge we propose a method, which determines in

A study of long boone measurement by CT scanogram - Comparison with spot scanogram -

International Nuclear Information System (INIS)

Suh, Chang Hae; Kang, Heung Sik; Jung, Jin Wook; Yeon, Kyung Mo

1987-01-01

CT scanogram is a new technique for measuring leg length discrepancy and has many advantage as compared with conventional spot scanogram. 30 dried bones were measured by direct measurement, spot scanogram and CT scanogram. Accuracy of CT scanogram was compared with spot scanogram. For evaluation of systemic error of CT, steel rulers and dried bones were measured at two different window settings. Decentering error in spot scanogram was measured by using dried bones, and 180 spots of 30 clinical cases of Beli-thompson studies were reviewed for evaluation of incidence and degree of decentering. The results of measurements of CT and spot scanogram in ideal position and technique were equivalent to those of direct measurements. But in spot scanogram, significant errors were noted in flexion status and decentered film. 54 spot (42.9%) of 30 clinical cases were decentered more than 1 cm. In CT scanogram, decentering error was completely excluded and shortening due to flexion deformity was overcomed by lateral scanogram. CT scanogram is a simple and accurate method for leg length measurement. Thus we recommend CT scanogram as a routine use for evaluation of leg length discrepancy.

Comparison between monitored and modeled pore water pressure and safety factor in a slope susceptible to shallow landslides

Science.gov (United States)

Bordoni, Massimiliano; Meisina, Claudia; Zizioli, Davide; Valentino, Roberto; Bittelli, Marco; Chersich, Silvia

2014-05-01

Shallow landslides can be defined as slope movements affecting superficial deposits of small thicknesses which are usually triggered due to extreme rainfall events, also very concentrated in time. Shallow landslides are hazardous phenomena: in particular, if they happen close to urbanized areas they could cause significant damages to cultivations, structures, infrastructures and, sometimes, human losses. The triggering mechanism of rainfall-induced shallow landslides is strictly linked with the hydrological and mechanical responses of usually unsaturated soils to rainfall events. For this reason, it is fundamental knowing the intrinsic hydro-mechanical properties of the soils in order to assess both susceptibility and hazard of shallow landslide and to develop early-warning systems at large scale. The hydrological data collected by a 20 months monitoring on a slope susceptible to shallow landslides in an area of the North -Eastern Oltrepo Pavese (Northern Apennines, Italy) were used to identify the hydrological behaviors of the investigated soils towards rainfall events. Field conditions under different rainfall trends have also been modeled by using both hydrological and physically-based stability models for the evaluation of the slope safety factor . The main objectives of this research are: (a) to compare the field measured pore water pressures at different depths with results of hydrological models, in order to evaluate the efficiency of the tested models and to determine how precipitations affect pore pressure development; (b) to compare the time trends of the safety factor that have been obtained by applying different stability models; (c) to evaluate, through a sensitivity analysis, the effects of soil hydrological properties on modeling pore water pressure and safety factor. The test site slope where field measurements were acquired is representative of other sites in Northern Apennines affected by shallow landslides and is characterized by medium

Response of the soil physical properties to restoration techniques in limestone quarries

Science.gov (United States)

Luna Ramos, Lourdes; Miralles Mellado, Isabel; Vignozzi, Nadia; Solé-Benet, Albert

2016-04-01

The devastating effects of soil erosion in mining areas from arid/semiarid environments have prompted efforts geared toward an improvement of the soil physical conditions for a fast establishment of vegetal cover. Restoration practices that increase soil moisture content are essential in drylands where rainfall is irregular or insufficient in order to accelerate ecological restoration. The aim of this study was to analyse the influence of organic amendments and mulches on the soil porosity as well as their impact on infiltration, five years after the beginning of an experimental restoration from limestone quarries in Sierra de Gádor (Almería, SE Spain). Nine plots 15 x 5 m were prepared at the site in a completely randomized 2 x 3 factorial design. The first factor, organic amendment, had three levels: sewage sludge (SA), compost from domestic organic residues (CA) and no amendment (NA). The second factor, mulches, also had three levels: gravel (GM), woodchip (WM) and no mulch (NM). In each experimental plot 75 native plants (Macrochloa tenacissima, Anthyllis terniflora and Anthyllis cytisoides) were planted. Infiltration was determined from rainfall simulations and soil porosity was assessed by image analysis of soil thin sections. Total porosity and pores distribution were measured according to pore shape (regular, irregular and elongated) and size (transmission pores [50-500 μm] and fissures [>500 μm]). Natural undisturbed soils around the mine area were used as a reference soil (RS). Restoration treatments showed higher total porosity, fissures and elongated pores than RS and we observed the highest values in treatments with WM. This fact is due to the disruption caused by the application of treatments rather that a good soil structure. Each combination exhibited different values of transmission pores, being greater in the combinations of NA-GM, SA-NM and CA-WM. Infiltration increased with the increase of the total porosity, fissures and elongated pores

CT false-profile view of the hip: a reproducible method of measuring anterior acetabular coverage using volume CT data

International Nuclear Information System (INIS)

Needell, Steven D.; Borzykowski, Ross M.; Carreira, Dominic S.; Kozy, John

2014-01-01

To devise a simple, reproducible method of using CT data to measure anterior acetabular coverage that results in values analogous to metrics derived from false-profile radiographs. Volume CT images were used to generate simulated false-profile radiographs and cross-sectional false-profile views by angling a multiplanar reformat 115 through the affected acetabulum relative to a line tangential to the posterior margin of the ischial tuberosities. The anterolateral margin of the acetabulum was localized on the CT false-profile view corresponding with the cranial opening of the acetabular roof. Anterior center edge angle (CEA) was measured between a vertical line passing through the center of the femoral head and a line connecting the center of the femoral head with the anterior edge of the condensed line of the acetabulum (sourcil). Anterior CEA values measured on CT false-profile views of 38 symptomatic hips were compared with values obtained on simulated and projection false-profile radiographs. The CT false-profile view produces a cross-sectional image in the same obliquity as false-profile radiographs. Anterior CEA measured on CT false-profile views were statistically similar to values obtained with false-profile radiographs. CT technologists quickly mastered the technique of generating this view. Inter-rater reliability indicated this method to be highly reproducible. The CT false-profile view is simple to generate and anterior CEA measurements derived from it are similar to those obtained using well-positioned false-profile radiographs. Utilization of CT to assess hip geometry enables precise control of pelvic inclination, eliminates projectional errors, and minimizes limitations of image quality inherent to radiography. (orig.)

CT false-profile view of the hip: a reproducible method of measuring anterior acetabular coverage using volume CT data

Energy Technology Data Exchange (ETDEWEB)

Needell, Steven D.; Borzykowski, Ross M. [Boca Radiology Group, Boca Raton, FL (United States); Carreira, Dominic S.; Kozy, John [Broward Health Orthopedics and Sports Medicine, Fort Lauderdale, FL (United States)

2014-11-15

To devise a simple, reproducible method of using CT data to measure anterior acetabular coverage that results in values analogous to metrics derived from false-profile radiographs. Volume CT images were used to generate simulated false-profile radiographs and cross-sectional false-profile views by angling a multiplanar reformat 115 through the affected acetabulum relative to a line tangential to the posterior margin of the ischial tuberosities. The anterolateral margin of the acetabulum was localized on the CT false-profile view corresponding with the cranial opening of the acetabular roof. Anterior center edge angle (CEA) was measured between a vertical line passing through the center of the femoral head and a line connecting the center of the femoral head with the anterior edge of the condensed line of the acetabulum (sourcil). Anterior CEA values measured on CT false-profile views of 38 symptomatic hips were compared with values obtained on simulated and projection false-profile radiographs. The CT false-profile view produces a cross-sectional image in the same obliquity as false-profile radiographs. Anterior CEA measured on CT false-profile views were statistically similar to values obtained with false-profile radiographs. CT technologists quickly mastered the technique of generating this view. Inter-rater reliability indicated this method to be highly reproducible. The CT false-profile view is simple to generate and anterior CEA measurements derived from it are similar to those obtained using well-positioned false-profile radiographs. Utilization of CT to assess hip geometry enables precise control of pelvic inclination, eliminates projectional errors, and minimizes limitations of image quality inherent to radiography. (orig.)

The measurement of pore size in porous and microporous materials using resonant ion beam backscattering

International Nuclear Information System (INIS)

Armitage, B.H.; Ramsay, J.D.F.; Brady, F.P.

1978-01-01

Established methods for measuring the size of pores in porous materials include those of mercury porosimetry and gas adsorption. A disadvantage of these methods is that only one determination can be made for each prepared specimen. A property of the ion beam backscattering method is that each specimen can be probed over the surface and also as a function of depth. Furthermore for microporous samples (pore width less than 2 nm) mercury penetration methods cannot be used because the high pressures involved make unreasonable demands in terms of mechanical strength. At the same time gas adsoption techniques are considerably restricted because capillary condensation is no longer possible because of the small size of the pores. A description is given of the methods of calculation of pore size from resonant ion beam backscattering data, with various assumptions for the pore and interpore path length distributions. Examples are shown of results obtained with highly porous silica gels where good agreement with gas adsoption has been achieved. Finally, some results obtained by scanning silica gels of lower porosity are also given. (Auth.)

Links between matrix bulk density, macropore characteristics and hydraulic behavior of soils

DEFF Research Database (Denmark)

Katuwal, Sheela; Møldrup, Per; Lamandé, Mathieu

2013-01-01

characteristics on soil hydraulic functions has rarely been studied. With the objective of studying the links between these parameters we quantified macropore characteristics of intact soil columns (19 cm diameter x 20 cm high) from two agricultural field sites (Silstrup and Faardrup) in Denmark using coarse...... resolution X-ray CT and linked them with laboratory measurements of air permeability and leaching experiment. In addition to macropore characteristics, we also quantified the CT-number of the matrix as a measure of the bulk density of the matrix, i.e., excluding macropores in the soil. Soils from the two...

Analysis of nitrogen and carbon tetrachloride adsorption isotherms and pore size distribution for siliceous MCM-41 synthesized from rice husk silica

Directory of Open Access Journals (Sweden)

Siriluk Chiarakorn

2004-02-01

Full Text Available RH-MCM-41 particles were synthesized using sodium silicate prepared from rice husk as a silica source and hexadecyltrimethylammonium bromide (CTAB as a surfactant. The molar compositions were 1.0SiO2: 1.1NaOH: 0.13CTAB: 0.12H2O. This material was used for adsorption isotherm studies of carbon tetrachloride (CT at 25 oC using a magnetically coupled microbalance, and compared with adsorption isotherms using nitrogen at 77 K. The CT isotherms were classified as reversible Type V isotherms, and the nitrogen adsorption isotherm was Type IVc. Capillary condensation was found in a very narrow pressure range, indicating the presence of nearly uniform pores in the RH-MCM-41 particles, which agrees very well with TEM results. The surface area estimated by using the BET method was (800 ± 8 m2 g-1. Pore size distributions (PSD of nitrogen and CT adsorption isotherms for a series of MCM-41 were calculated by using method recommended by Naono and Hakuman (1997. The pore size distributions from the nitrogen isotherm using the BJH and Naono methods showed quite narrow pore diameter distributions, centered around 27 and 29 Å, respectively. Similarly, the peak pore diameters calculated from CT isotherms using the BJH and Naono methods were 24 and 28 Å. It was found that the PSDs analyzed by the BJH method were underestimated compared to that from Naono method.

Compaction and rotovation effects on soil pore characteristics of a loamy sand soil with contrasting organic matter content

DEFF Research Database (Denmark)

Eden, Marie; Schjønning, Per; Møldrup, Per

2011-01-01

only mineral fertilizer (MF) or, in addition, animal manure (OF). Undisturbed soil cores were taken from two separate fields in consecutive years at an identical stage in the crop rotation. We measured soil organic carbon (OC), soil microbial biomass carbon (BC), and hot-water extractable carbon (Chot...... OF had larger porosity than that from treatment MF. Treatment P eliminated this difference and significantly reduced the volume of macropores. This interaction between soil organic matter content and mechanical impact was also reflected in the gas diffusion data. Specific air permeability was mainly...

Pore Effect on the Occurrence and Formation of Gas Hydrate in Permafrost of Qilian Mountain, Qinghai-Tibet Plateau, China

Science.gov (United States)

Gao, H.; Lu, H.; Lu, Z.

2014-12-01

Gas hydrates were found in the permafrost of Qilian Mountain, Qinghai- Tibet Plateau, China in 2008. It has been found that gas hydrates occur in Jurassic sedimentary rocks, and the hydrated gases are mainly thermogenic. Different from the gas hydrates existing in loose sands in Mallik, Mackenzie Delta, Canada and North Slope, Alaska, USA, the gas hydrates in Qilian Mountain occurred in hard rocks. For understanding the occurrence and formation mechanism of gas hydrate in hard rcok, extensive experimental investigations have been conducted to study the pore features and hydrate formation in the rocks recovered from the hydrate layers in Qilian Mountain. The structures of sedimentary rock were observed by high-resolution X-ray CT, and pore size distribution of a rock specimen was measured with the mercury-injection method. Methane hydrate was synthesized in water-saturated rocks, and the saturations of hydrate in sedimentary rocks of various types were estimated from the amount of gas released from certain volume of rock. X-ray CT observation revealed that fractures were developed in the rocks associated with faults, while those away from faults were generally with massive structure. The mercury-injection analysis of pore features found that the porosities of the hydrate-existing rocks were generally less than 3%, and the pore sizes were generally smaller than 100 nm. The synthesizing experiments found that the saturation of methane hydrate were generally lower than 6% of pore space in rocks, but up to 16% when fractures developed. The low hydrate saturation in Qilian sedimentary rocks has been found mainly due to the small pore size of rock. The low hydrate saturation in the rocks might be the reason for the failure of regional seismic and logging detections of gas hydrates in Qilian Mountain.

Comparison of measurement results between cervical pedicle specimens and CT images

International Nuclear Information System (INIS)

Zhang Guangjian; Li Hua; Liu Haiyan; Gao Zhenping

2011-01-01

Objective: To compare the difference between the measurement results of the cervical pedicle specimens and CT image, and provide the basis for clinical cervical screw internal fixation operation. Methods: Twenty-seven Chinese adult cadaver cervical specimens including C3 to C7 vertebrae were measured by a digital calipers and CT image, containing pedicle height (PH, PH'), pedicle width(PW, PW'), total pedicle length (TL, TL') and two pedicle lengths(PL1, PL2; PL1', PL2'). The results of specimens and CT image were compared. Results: Different cervical vertebra in the same side of specimens or CT images, PW (PW'): C3, C4< C5, C6 (P<0.05), C5, C6< C7 (P<0.01); PH (PH'): there were no significant differences; TL, PL1, PL2 (TL', PL1', PL2'): there were no marked differences. In the same cervical vertebra of the specimens or CT images, PW (PW')< PH (PH') (P<0.01), PL1 (PL1') < PL2 (PL2') (P<0.01). Conclusion: The results of measurement by CT images are not markedly different from that of specimens. CT image measurement is available before cervical screw internal fixation operation. (authors)

In situ pore-pressure evolution during dynamic CPT measurements in soft sediments of the western Baltic Sea

Science.gov (United States)

Seifert, Annedore; Stegmann, Sylvia; Mörz, Tobias; Lange, Matthias; Wever, Thomas; Kopf, Achim

2008-08-01

We present in situ strength and pore-pressure measurements from 57 dynamic cone penetration tests in sediments of Mecklenburg ( n = 51), Eckernförde ( n = 2) and Gelting ( n = 4) bays, western Baltic Sea, characterised by thick mud layers and partially free microbial gas resulting from the degradation of organic material. In Mecklenburg and Eckernförde bays, sediment sampling by nine gravity cores served sedimentological characterisation, analyses of geotechnical properties, and laboratory shear tests. At selected localities, high-resolution echo-sounder profiles were acquired. Our aim was to deploy a dynamic cone penetrometer (CPT) to infer sediment shear strength and cohesion of the sea bottom as a function of fluid saturation. The results show very variable changes in pore pressure and sediment strength during the CPT deployments. The majority of the CPT measurements ( n = 54) show initially negative pore-pressure values during penetration, and a delayed response towards positive pressures thereafter. This so-called type B pore-pressure signal was recorded in all three bays, and is typically found in soft muds with high water contents and undrained shear strengths of 1.6-6.4 kPa. The type B signal is further affected by displacement of sediment and fluid upon penetration of the lance, skin effects during dynamic profiling, enhanced consolidation and strength of individual horizons, the presence of free gas, and a dilatory response of the sediment. In Mecklenburg Bay, the remaining small number of CPT measurements ( n = 3) show a well-defined peak in both pore pressure and cone resistance during penetration, i.e. an initial marked increase which is followed by exponential pore-pressure decay during dissipation. This so-called type A pore-pressure signal is associated with normally consolidated mud, with indurated clay layers showing significantly higher undrained shear strength (up to 19 kPa). In Eckernförde and Gelting bays pore-pressure response type B is

Multifractal analysis of 2D gray soil images

Science.gov (United States)

González-Torres, Ivan; Losada, Juan Carlos; Heck, Richard; Tarquis, Ana M.

2015-04-01

Soil structure, understood as the spatial arrangement of soil pores, is one of the key factors in soil modelling processes. Geometric properties of individual and interpretation of the morphological parameters of pores can be estimated from thin sections or 3D Computed Tomography images (Tarquis et al., 2003), but there is no satisfactory method to binarized these images and quantify the complexity of their spatial arrangement (Tarquis et al., 2008, Tarquis et al., 2009; Baveye et al., 2010). The objective of this work was to apply a multifractal technique, their singularities (α) and f(α) spectra, to quantify it without applying any threshold (Gónzalez-Torres, 2014). Intact soil samples were collected from four horizons of an Argisol, formed on the Tertiary Barreiras group of formations in Pernambuco state, Brazil (Itapirema Experimental Station). The natural vegetation of the region is tropical, coastal rainforest. From each horizon, showing different porosities and spatial arrangements, three adjacent samples were taken having a set of twelve samples. The intact soil samples were imaged using an EVS (now GE Medical. London, Canada) MS-8 MicroCT scanner with 45 μm pixel-1 resolution (256x256 pixels). Though some samples required paring to fit the 64 mm diameter imaging tubes, field orientation was maintained. References Baveye, P.C., M. Laba, W. Otten, L. Bouckaert, P. Dello, R.R. Goswami, D. Grinev, A. Houston, Yaoping Hu, Jianli Liu, S. Mooney, R. Pajor, S. Sleutel, A. Tarquis, Wei Wang, Qiao Wei, Mehmet Sezgin. Observer-dependent variability of the thresholding step in the quantitative analysis of soil images and X-ray microtomography data. Geoderma, 157, 51-63, 2010. González-Torres, Iván. Theory and application of multifractal analysis methods in images for the study of soil structure. Master thesis, UPM, 2014. Tarquis, A.M., R.J. Heck, J.B. Grau; J. Fabregat, M.E. Sanchez and J.M. Antón. Influence of Thresholding in Mass and Entropy Dimension of 3-D

PC Assisted Anatomical Measurements in 3D Using CT Data

DEFF Research Database (Denmark)

Hvidtfeldt, Mogens; Pedersen, Steen

1999-01-01

To assess facilities and applications of a programme for a PC based CT measurements in 3D of anatomical angelse in the skeleton.......To assess facilities and applications of a programme for a PC based CT measurements in 3D of anatomical angelse in the skeleton....

Prediction of phosphorus mobilisation in inundated floodplain soils

Energy Technology Data Exchange (ETDEWEB)

Loeb, Roos [Department of Aquatic Ecology and Environmental Biology, Institute for Water and Wetland Research, Radboud University Nijmegen, Toernooiveld 1, 6525 ED Nijmegen (Netherlands)], E-mail: r.loeb@science.ru.nl; Lamers, Leon P.M.; Roelofs, Jan G.M. [Department of Aquatic Ecology and Environmental Biology, Institute for Water and Wetland Research, Radboud University Nijmegen, Toernooiveld 1, 6525 ED Nijmegen (Netherlands)

2008-11-15

After flooding, iron reduction in riverine wetlands may cause the release of large quantities of phosphorus. As phosphorus is an important nutrient causing eutrophication in aquatic systems, it is important to have a tool to predict this potential release. In this study we examined the P release to the soil pore water in soil cores from floodplains in the Netherlands and from less anthropogenically influenced floodplains from Poland. During the inundation experiment, concentrations of P in the pore water rose to 2-90 times the initial concentrations. P release was not directly related to the geographic origin of the soils. An important predictor variable of P release was found in the ratio between the concentration of iron-bound P and amorphous iron. This ratio may provide a practical tool for the selection of new areas for wetland creation, and for impact assessment of plans for riverine wetland restoration and floodwater storage. - Mobilisation of phosphorus in floodplain wetland soils can be predicted with easily measurable soil characteristics.

Prediction of phosphorus mobilisation in inundated floodplain soils

International Nuclear Information System (INIS)

Loeb, Roos; Lamers, Leon P.M.; Roelofs, Jan G.M.

2008-01-01

After flooding, iron reduction in riverine wetlands may cause the release of large quantities of phosphorus. As phosphorus is an important nutrient causing eutrophication in aquatic systems, it is important to have a tool to predict this potential release. In this study we examined the P release to the soil pore water in soil cores from floodplains in the Netherlands and from less anthropogenically influenced floodplains from Poland. During the inundation experiment, concentrations of P in the pore water rose to 2-90 times the initial concentrations. P release was not directly related to the geographic origin of the soils. An important predictor variable of P release was found in the ratio between the concentration of iron-bound P and amorphous iron. This ratio may provide a practical tool for the selection of new areas for wetland creation, and for impact assessment of plans for riverine wetland restoration and floodwater storage. - Mobilisation of phosphorus in floodplain wetland soils can be predicted with easily measurable soil characteristics

Micro- and nano-X-ray computed-tomography: A step forward in the characterization of the pore network of a leached cement paste

International Nuclear Information System (INIS)

Bossa, Nathan; Chaurand, Perrine; Vicente, Jérôme; Borschneck, Daniel; Levard, Clément; Aguerre-Chariol, Olivier; Rose, Jérôme

2015-01-01

Pore structure of leached cement pastes (w/c = 0.5) was studied for the first time from micro-scale down to the nano-scale by combining micro- and nano-X-ray computed tomography (micro- and nano-CT). This allowed assessing the 3D heterogeneity of the pore network along the cement profile (from the core to the altered layer) of almost the entire range of cement pore size, i.e. from capillary to gel pores. We successfully quantified an increase of porosity in the altered layer at both resolutions. Porosity is increasing from 1.8 to 6.1% and from 18 to 58% at the micro-(voxel = 1.81 μm) and nano-scale (voxel = 63.5 nm) respectively. The combination of both CT allowed to circumvent weaknesses inherent of both investigation scales. In addition the connectivity and the channel size of the pore network were also evaluated to obtain a complete 3D pore network characterization at both scales

Biochar increased water holding capacity but accelerated organic carbon leaching from a sloping farmland soil in China.

Science.gov (United States)

Liu, Chen; Wang, Honglan; Tang, Xiangyu; Guan, Zhuo; Reid, Brian J; Rajapaksha, Anushka Upamali; Ok, Yong Sik; Sun, Hui

2016-01-01

A hydrologically contained field study, to assess biochar (produced from mixed crop straws) influence upon soil hydraulic properties and dissolved organic carbon (DOC) leaching, was conducted on a loamy soil (entisol). The soil, noted for its low plant-available water and low soil organic matter, is the most important arable soil type in the upper reaches of the Yangtze River catchment, China. Pore size distribution characterization (by N2 adsorption, mercury intrusion, and water retention) showed that the biochar had a tri-modal pore size distribution. This included pores with diameters in the range of 0.1-10 μm that can retain plant-available water. Comparison of soil water retention curves between the control (0) and the biochar plots (16 t ha(-1) on dry weight basis) demonstrated biochar amendment to increase soil water holding capacity. However, significant increases in DOC concentration of soil pore water in both the plough layer and the undisturbed subsoil layer were observed in the biochar-amended plots. An increased loss of DOC relative to the control was observed upon rainfall events. Measurements of excitation-emission matrix (EEM) fluorescence indicated the DOC increment originated primarily from the organic carbon pool in the soil that became more soluble following biochar incorporation.

Petrographic characterization to build an accurate rock model using micro-CT: Case study on low-permeable to tight turbidite sandstone from Eocene Shahejie Formation.

Science.gov (United States)

Munawar, Muhammad Jawad; Lin, Chengyan; Cnudde, Veerle; Bultreys, Tom; Dong, Chunmei; Zhang, Xianguo; De Boever, Wesley; Zahid, Muhammad Aleem; Wu, Yuqi

2018-03-26

Pore scale flow simulations heavily depend on petrographic characterizing and modeling of reservoir rocks. Mineral phase segmentation and pore network modeling are crucial stages in micro-CT based rock modeling. The success of the pore network model (PNM) to predict petrophysical properties relies on image segmentation, image resolution and most importantly nature of rock (homogenous, complex or microporous). The pore network modeling has experienced extensive research and development during last decade, however the application of these models to a variety of naturally heterogenous reservoir rock is still a challenge. In this paper, four samples from a low permeable to tight sandstone reservoir were used to characterize their petrographic and petrophysical properties using high-resolution micro-CT imaging. The phase segmentation analysis from micro-CT images shows that 5-6% microporous regions are present in kaolinite rich sandstone (E3 and E4), while 1.7-1.8% are present in illite rich sandstone (E1 and E2). The pore system percolates without micropores in E1 and E2 while it does not percolate without micropores in E3 and E4. In E1 and E2, total MICP porosity is equal to the volume percent of macrospores determined from micro-CT images, which indicate that the macropores are well connected and microspores do not play any role in non-wetting fluid (mercury) displacement process. Whereas in E3 and E4 sandstones, the volume percent of micropores is far less (almost 50%) than the total MICP porosity which means that almost half of the pore space was not detected by the micro-CT scan. PNM behaved well in E1 and E2 where better agreement exists in PNM and MICP measurements. While E3 and E4 exhibit multiscale pore space which cannot be addressed with single scale PNM method, a multiscale approach is needed to characterize such complex rocks. This study provides helpful insights towards the application of existing micro-CT based petrographic characterization methodology

Linking Soil Physical Parameters Along a Density Gradient in a Loess-Soil Long-Term Experiment

DEFF Research Database (Denmark)

Eden, Marie; Møldrup, Per; Schjønning, Per

2012-01-01

It is important to understand the impact of texture and organic carbon (OC) on soil structure development. Only few studies investigated this for silt-dominated soils. In this study, soil physical properties were determined on samples from a controlled experiment (Static Fertilization Experiment...... hydraulic conductivity. The management resulted in a distinct gradient in OC. A bulk density gradient developed from differences in amount of clay not complexed with OC. This gradient in bulk density mainly affected content of pores larger than 3 [mu]m. The air-connected porosity measured by a pycnometer...

Measurement of time delay for a prospectively gated CT simulator

Directory of Open Access Journals (Sweden)

Goharian M

2010-01-01

Full Text Available For the management of mobile tumors, respiratory gating is the ideal option, both during imaging and during therapy. The major advantage of respiratory gating during imaging is that it is possible to create a single artifact-free CT data-set during a selected phase of the patient′s breathing cycle. The purpose of the present work is to present a simple technique to measure the time delay during acquisition of a prospectively gated CT. The time delay of a Philips Brilliance BigBore™ (Philips Medical Systems, Madison, WI scanner attached to a Varian Real-Time Position Management™ (RPM system (Varian Medical Systems, Palo Alto, CA was measured. Two methods were used to measure the CT time delay: using a motion phantom and using a recorded data file from the RPM system. In the first technique, a rotating wheel phantom was altered by placing two plastic balls on its axis and rim, respectively. For a desired gate, the relative positions of the balls were measured from the acquired CT data and converted into corresponding phases. Phase difference was calculated between the measured phases and the desired phases. Using period of motion, the phase difference was converted into time delay. The Varian RPM system provides an external breathing signal; it also records transistor-transistor logic (TTL ′X-Ray ON′ status signal from the CT scanner in a text file. The TTL ′X-Ray ON′ indicates the start of CT image acquisition. Thus, knowledge of the start time of CT acquisition, combined with the real-time phase and amplitude data from the external respiratory signal, provides time-stamping of all images in an axial CT scan. The TTL signal with time-stamp was used to calculate when (during the breathing cycle a slice was recorded. Using the two approaches, the time delay between the prospective gating signal and CT simulator has been determined to be 367 ± 40 ms. The delay requires corrections both at image acquisition and while setting gates for

Measurement of time delay for a prospectively gated CT simulator

International Nuclear Information System (INIS)

Goharian, M.; Khan, R.F.H.

2010-01-01

For the management of mobile tumors, respiratory gating is the ideal option, both during imaging and during therapy. The major advantage of respiratory gating during imaging is that it is possible to create a single artifact-free CT data-set during a selected phase of the patient's breathing cycle. The purpose of the present work is to present a simple technique to measure the time delay during acquisition of a prospectively gated CT. The time delay of a Philips Brilliance BigBore (Philips Medical Systems, Madison, WI) scanner attached to a Varian Real-Time Position Management (RPM) system (Varian Medical Systems, Palo Alto, CA) was measured. Two methods were used to measure the CT time delay: using a motion phantom and using a recorded data file from the RPM system. In the first technique, a rotating wheel phantom was altered by placing two plastic balls on its axis and rim, respectively. For a desired gate, the relative positions of the balls were measured from the acquired CT data and converted into corresponding phases. Phase difference was calculated between the measured phases and the desired phases. Using period of motion, the phase difference was converted into time delay. The Varian RPM system provides an external breathing signal; it also records transistor-transistor logic (TTL) 'X-Ray ON' status signal from the CT scanner in a text file. The TTL 'X-Ray ON' indicates the start of CT image acquisition. Thus, knowledge of the start time of CT acquisition, combined with the real-time phase and amplitude data from the external respiratory signal, provides time-stamping of all images in an axial CT scan. The TTL signal with time-stamp was used to calculate when (during the breathing cycle) a slice was recorded. Using the two approaches, the time delay between the prospective gating signal and CT simulator has been determined to be 367 ± 40 ms. The delay requires corrections both at image acquisition and while setting gates for the treatment delivery

Deriving the suction stress of unsaturated soils from water retention curve, based on wetted surface area in pores

Science.gov (United States)

Greco, Roberto; Gargano, Rudy

2016-04-01

The evaluation of suction stress in unsaturated soils has important implications in several practical applications. Suction stress affects soil aggregate stability and soil erosion. Furthermore, the equilibrium of shallow unsaturated soil deposits along steep slopes is often possible only thanks to the contribution of suction to soil effective stress. Experimental evidence, as well as theoretical arguments, shows that suction stress is a nonlinear function of matric suction. The relationship expressing the dependence of suction stress on soil matric suction is usually indicated as Soil Stress Characteristic Curve (SSCC). In this study, a novel equation for the evaluation of the suction stress of an unsaturated soil is proposed, assuming that the exchange of stress between soil water and solid particles occurs only through the part of the surface of the solid particles which is in direct contact with water. The proposed equation, based only upon geometric considerations related to soil pore-size distribution, allows to easily derive the SSCC from the water retention curve (SWRC), with the assignment of two additional parameters. The first parameter, representing the projection of the external surface area of the soil over a generic plane surface, can be reasonably estimated from the residual water content of the soil. The second parameter, indicated as H0, is the water potential, below which adsorption significantly contributes to water retention. For the experimental verification of the proposed approach such a parameter is considered as a fitting parameter. The proposed equation is applied to the interpretation of suction stress experimental data, taken from the literature, spanning over a wide range of soil textures. The obtained results show that in all cases the proposed relationships closely reproduces the experimental data, performing better than other currently used expressions. The obtained results also show that the adopted values of the parameter H0

Organ dose evaluation for CT scans based on in-phantom measurements

International Nuclear Information System (INIS)

Liu Haikuan; Zhuo Weihai; Chen Bo; Yi Yanling; Li Dehong

2009-01-01

Objective: To explore the organ doses and their distributions in different projections of CT scans. Methods: The CT values were measured and the linear absorption coefficients were derived for the main organs of the anthropomorphic phantom to compare with the normal values of human beings. The radiophotoluminescent glass dosimeters were set into various tissues or organs of the phantom for mimic measurements of the organ doses undergoing the head, chest, abdomen and pelvis CT scans, respectively. Results: The tissue equivalence of the phantom used in this study was good. The brain had the largest organ dose undergoing the head CT scan. The organ doses in thyroid, breast, lung and oesophagus were relatively large in performing the chest CT scan, while the liver, stomach, colon and lung had relatively hrge organ doses in abdomen CT practice. The doses in bone surface and colon exceeded by 50 mGy in a single pelvis CT scan. Conclusions: The organ doses and their distributions largely vary with different projections of CT scans. The organ doses of colon, bone marrow,gonads and bladder are fairly large in performing pelvis CT scan, which should be paid attention in the practice. (authors)

Measuring Soil Moisture in Skeletal Soils Using a COSMOS Rover

Science.gov (United States)

Medina, C.; Neely, H.; Desilets, D.; Mohanty, B.; Moore, G. W.

2017-12-01

The presence of coarse fragments directly influences the volumetric water content of the soil. Current surface soil moisture sensors often do not account for the presence of coarse fragments, and little research has been done to calibrate these sensors under such conditions. The cosmic-ray soil moisture observation system (COSMOS) rover is a passive, non-invasive surface soil moisture sensor with a footprint greater than 100 m. Despite its potential, the COSMOS rover has yet to be validated in skeletal soils. The goal of this study was to validate measurements of surface soil moisture as taken by a COSMOS rover on a Texas skeletal soil. Data was collected for two soils, a Marfla clay loam and Chinati-Boracho-Berrend association, in West Texas. Three levels of data were collected: 1) COSMOS surveys at three different soil moistures, 2) electrical conductivity surveys within those COSMOS surveys, and 3) ground-truth measurements. Surveys with the COSMOS rover covered an 8000-h area and were taken both after large rain events (>2") and a long dry period. Within the COSMOS surveys, the EM38-MK2 was used to estimate the spatial distribution of coarse fragments in the soil around two COSMOS points. Ground truth measurements included coarse fragment mass and volume, bulk density, and water content at 3 locations within each EM38 survey. Ground-truth measurements were weighted using EM38 data, and COSMOS measurements were validated by their distance from the samples. There was a decrease in water content as the percent volume of coarse fragment increased. COSMOS estimations responded to both changes in coarse fragment percent volume and the ground-truth volumetric water content. Further research will focus on creating digital soil maps using landform data and water content estimations from the COSMOS rover.

Computed tomography scanner applied to soil compaction studies

International Nuclear Information System (INIS)

Vaz, C.M.P.

1989-11-01

The soil compaction problem was studied using a first generation computed tomography scanner (CT). This apparatus gets images of soil cross sections samples, with resolution of a few millimeters. We performed the following laboratory and field experiments: basic experiments of equipment calibrations and resolutions studies; measurements of compacted soil thin layers; measurements of soil compaction caused by agricultural tools; stress-strain modelling in confined soil sample, with several moisture degree; characterizations of soil bulk density profile with samples collected in a hole (trench), comparing with a cone penetrometer technique. (author)

Investigating Multiphase Flow Phenomena in Fine-Grained Reservoir Rocks: Insights from Using Ethane Permeability Measurements over a Range of Pore Pressures

Directory of Open Access Journals (Sweden)

Eric Aidan Letham

2018-01-01

Full Text Available The ability to quantify effective permeability at the various fluid saturations and stress states experienced during production from shale oil and shale gas reservoirs is required for efficient exploitation of the resources, but to date experimental challenges prevent measurement of the effective permeability of these materials over a range of fluid saturations. To work towards overcoming these challenges, we measured effective permeability of a suite of gas shales to gaseous ethane over a range of pore pressures up to the saturated vapour pressure. Liquid/semiliquid ethane saturation increases due to adsorption and capillary condensation with increasing pore pressure resulting in decreasing effective permeability to ethane gas. By how much effective permeability to ethane gas decreases with adsorption and capillary condensation depends on the pore size distribution of each sample and the stress state that effective permeability is measured at. Effective permeability decreases more at higher stress states because the pores are smaller at higher stress states. The largest effective permeability drops occur in samples with dominant pore sizes in the mesopore range. These pores are completely blocked due to capillary condensation at pore pressures near the saturated vapour pressure of ethane. Blockage of these pores cuts off the main fluid flow pathways in the rock, thereby drastically decreasing effective permeability to ethane gas.

Unsaturated Seepage Analysis of Cracked Soil including Development Process of Cracks

Directory of Open Access Journals (Sweden)

Ling Cao

2016-01-01

Full Text Available Cracks in soil provide preferential pathways for water flow and their morphological parameters significantly affect the hydraulic conductivity of the soil. To study the hydraulic properties of cracks, the dynamic development of cracks in the expansive soil during drying and wetting has been measured in the laboratory. The test results enable the development of the relationships between the cracks morphological parameters and the water content. In this study, the fractal model has been used to predict the soil-water characteristic curve (SWCC of the cracked soil, including the developmental process of the cracks. The cracked expansive soil has been considered as a crack-pore medium. A dual media flow model has been developed to simulate the seepage characteristics of the cracked expansive soil. The variations in pore water pressure at different part of the model are quite different due to the impact of the cracks. This study proves that seepage characteristics can be better predicted if the impact of cracks is taken into account.

Diffusion of radon in candidate soils for covering uranium-mill tailings

International Nuclear Information System (INIS)

Kalkwarf, D.R.; Silker, W.B.

1984-01-01

Diffusion coefficients were measured for radon in 34 soils that had been identified by uranium mill personnel as candidate soils for covering their tailings piles in order to reduce radon emission. The coefficients referred to diffusion in the total pore space of the soils. They were measured by a steady-state method using soil columns compacted to greater than 80% of their Proctor maximum packing densities, but with moisture contents generally less than would be expected at a tailings site. Three published empirical equations relating diffusion coefficients to soil moisture and porosity were tested with these data. The best fit was obtained with the equation: D = 0.70 exp [-4(m-mP - +m 5 )] in which P is the dry porosity of the soil and m is its moisture saturation, e.e. the fraction of pore volume filled with water. This equation was used to extrapolate measured coefficients to values expected at soil-moisture contents representative of tailings sites in the western United States. Extrapolated values for silty sands and clayey sands ranged from 0.004 to 0.06 cm 2 /s where w, the weight ratio of water to dry soil, is expected to vary from 0.04 to 0.09. Values for inorganic silts and clays ranged from 0.001 to 0.02 cm 2 /s where w is expected to vary from 0.10 to 0.13

The value of pulmonary vessel CT measuring and calculating of relative ratio

International Nuclear Information System (INIS)

Ji Jiansong; Xu Xiaoxiong; Lv Suzhen; Zhao Zhongwei; Wang Zufei; Xu Min; Gong Jianping

2004-01-01

Objective: To evaluate value of CT measurement and calculation of vessels of isolate pig lung, by compare with measurement and calculation of resin cast of them. Methods: CT scanned and measured the four isolated pig lung which vessels were full with ABS liquid or self-solidification resin liquid, and calculate the relative ratio of superior/inferior order and vein/artery of same order. After resin cast were made, measure and calculate the same as CT did. Results: Second order of calculation of vein/artery of same order by the two method had statistic difference (P 0.05). Conclusion: CT has high value in calculation of the relative ratio of superior/inferior order

Pore Network Modeling: Alternative Methods to Account for Trapping and Spatial Correlation

KAUST Repository

De La Garza Martinez, Pablo

2016-05-01

Pore network models have served as a predictive tool for soil and rock properties with a broad range of applications, particularly in oil recovery, geothermal energy from underground reservoirs, and pollutant transport in soils and aquifers [39]. They rely on the representation of the void space within porous materials as a network of interconnected pores with idealised geometries. Typically, a two-phase flow simulation of a drainage (or imbibition) process is employed, and by averaging the physical properties at the pore scale, macroscopic parameters such as capillary pressure and relative permeability can be estimated. One of the most demanding tasks in these models is to include the possibility of fluids to remain trapped inside the pore space. In this work I proposed a trapping rule which uses the information of neighboring pores instead of a search algorithm. This approximation reduces the simulation time significantly and does not perturb the accuracy of results. Additionally, I included spatial correlation to generate the pore sizes using a matrix decomposition method. Results show higher relative permeabilities and smaller values for irreducible saturation, which emphasizes the effects of ignoring the intrinsic correlation seen in pore sizes from actual porous media. Finally, I implemented the algorithm from Raoof et al. (2010) [38] to generate the topology of a Fontainebleau sandstone by solving an optimization problem using the steepest descent algorithm with a stochastic approximation for the gradient. A drainage simulation is performed on this representative network and relative permeability is compared with published results. The limitations of this algorithm are discussed and other methods are suggested to create a more faithful representation of the pore space.

Pore Network Modeling: Alternative Methods to Account for Trapping and Spatial Correlation

KAUST Repository

De La Garza Martinez, Pablo

2016-01-01

Pore network models have served as a predictive tool for soil and rock properties with a broad range of applications, particularly in oil recovery, geothermal energy from underground reservoirs, and pollutant transport in soils and aquifers [39]. They rely on the representation of the void space within porous materials as a network of interconnected pores with idealised geometries. Typically, a two-phase flow simulation of a drainage (or imbibition) process is employed, and by averaging the physical properties at the pore scale, macroscopic parameters such as capillary pressure and relative permeability can be estimated. One of the most demanding tasks in these models is to include the possibility of fluids to remain trapped inside the pore space. In this work I proposed a trapping rule which uses the information of neighboring pores instead of a search algorithm. This approximation reduces the simulation time significantly and does not perturb the accuracy of results. Additionally, I included spatial correlation to generate the pore sizes using a matrix decomposition method. Results show higher relative permeabilities and smaller values for irreducible saturation, which emphasizes the effects of ignoring the intrinsic correlation seen in pore sizes from actual porous media. Finally, I implemented the algorithm from Raoof et al. (2010) [38] to generate the topology of a Fontainebleau sandstone by solving an optimization problem using the steepest descent algorithm with a stochastic approximation for the gradient. A drainage simulation is performed on this representative network and relative permeability is compared with published results. The limitations of this algorithm are discussed and other methods are suggested to create a more faithful representation of the pore space.

The Water-Induced Linear Reduction Gas Diffusivity Model Extended to Three Pore Regions

DEFF Research Database (Denmark)

Chamindu, T. K. K. Deepagoda; de Jonge, Lis Wollesen; Kawamoto, Ken

2015-01-01

. Characterization of soil functional pore structure is an essential prerequisite to understand key gas transport processes in variably saturated soils in relation to soil ecosystems, climate, and environmental services. In this study, the water-induced linear reduction (WLR) soil gas diffusivity model originally...... gas diffusivity from moist to dry conditions across differently structured porous media, including narrow soil size fractions, perforated plastic blocks, fractured limestone, peaty soils, aggregated volcanic ash soils, and particulate substrates for Earth- or space-based applications. The new Cip...

Pore size distribution in tablets measured with a morphological sieve

NARCIS (Netherlands)

Wu, Yu San; van Vliet, Lucas J.; Frijlink, Henderik W.; van der Voort Maarschalk, Kees

2007-01-01

Porosity and pore structure are important characteristics of tablets, since they influence mechanical strength and many other proper-ties. This paper proposes an alternative method for the characterization of pore structure based on image analysis of SEM micrographs. SEM images were made of sodium

An interdisciplinary approach towards improved understanding of soil deformation during compaction

DEFF Research Database (Denmark)

Keller, T.; Lamandé, Mathieu; Peth, S.

2013-01-01

and validation of new soil compaction models. The integration of concepts underlying dynamic processes that modify soil pore spaces and bulk properties will improve the understanding of how soil management affect vital soil mechanical, hydraulic and ecological functions supporting plant growth.......Soil compaction not only reduces available pore volume in which fluids are stored, but it alters the arrangement of soil constituents and pore geometry, thereby adversely impacting fluid transport and a range of soil ecological functions. Quantitative understanding of stress transmission...... and deformation processes in arable soils remains limited. Yet such knowledge is essential for better predictions of effects of soil management practices such as agricultural field traffic on soil functioning. Concepts and theory used in agricultural soil mechanics (soil compaction and soil tillage) are often...

Three dimensional characterization of soil macroporosity by X-ray microtomography

International Nuclear Information System (INIS)

Passoni, Sabrina; Pires, Luiz Fernando; Rosa, Jadir Aparecido

2015-01-01

Analysis of the soil pore system represents an important way of characterizing soil structure. Properties such as the shape and number of pores can be determined through soil pore evaluations. This study presents a three-dimensional (3D) characterization of the shape and number of pores of a sub-tropical soil. To do so, a second generation X-ray microtomography equipped with a plain type detector was employed. A voltage of 120 kV and current of 80 mA was applied to the X-ray tube. The soil samples analyzed were collected at three different depths (0-10, 10-20, and 20-30 cm). The results obtained allowed qualitative (images) and quantitative (3D) analyses of the soil structure, revealing the potential of the microtomographic technique, as well as the study of differences in soil macroporosity at different depths. Macroporosity was 5.14 % in the 0-10 cm layer, 5.10 % in the 10-20 cm layer, and 6.64 % in the 20-30 cm layer. The macroporosity of unclassified pores (UN) was 0.30 % (0-10 and 10-20 cm) and 0.40 % (20-30 cm), while equant pores (EQ) had values of 0.01 % at the three depths under analysis. (author)

Three dimensional characterization of soil macroporosity by X-ray microtomography

Energy Technology Data Exchange (ETDEWEB)

Passoni, Sabrina [Centro de Ensino Superior dos Campos Gerais, Ponta Grossa, PR (Brazil); Pires, Luiz Fernando, E-mail: lfpires@uepg.br [Universidade Estadual de Ponta Grossa (UFPG), Ponta Grossa, PR (Brazil). Departamento de Fisica; Heck, Richard [University of Guelph, School of Environmental Sciences, Guelph, Ontario (Canada); Rosa, Jadir Aparecido [Instituto Agronomico do Parana, Polo Regional de Pesquisa de Ponta Grossa, Ponta Grossa, PR (Brazil)

2015-03-15

Analysis of the soil pore system represents an important way of characterizing soil structure. Properties such as the shape and number of pores can be determined through soil pore evaluations. This study presents a three-dimensional (3D) characterization of the shape and number of pores of a sub-tropical soil. To do so, a second generation X-ray microtomography equipped with a plain type detector was employed. A voltage of 120 kV and current of 80 mA was applied to the X-ray tube. The soil samples analyzed were collected at three different depths (0-10, 10-20, and 20-30 cm). The results obtained allowed qualitative (images) and quantitative (3D) analyses of the soil structure, revealing the potential of the microtomographic technique, as well as the study of differences in soil macroporosity at different depths. Macroporosity was 5.14 % in the 0-10 cm layer, 5.10 % in the 10-20 cm layer, and 6.64 % in the 20-30 cm layer. The macroporosity of unclassified pores (UN) was 0.30 % (0-10 and 10-20 cm) and 0.40 % (20-30 cm), while equant pores (EQ) had values of 0.01 % at the three depths under analysis. (author)

Electrical Resistivity Correlation to Vadose Zone Sediment and Pore-Water Composition for the BC Cribs and Trenches Area

International Nuclear Information System (INIS)

Serne, R. Jeffrey; Ward, Anderson L.; Um, Wooyong; Bjornstad, Bruce N.; Rucker, Dale F.; Lanigan, David C.; Benecke, Mark W.

2009-01-01

This technical report documents the results of geochemical and soil resistivity characterization of sediment obtained from four boreholes drilled in the BC Cribs and Trench area. Vadose zone sediment samples were obtained at a frequency of about every 2.5 ft from approximately 5 ft bgs to borehole total depth. In total, 505 grab samples and 39 six-inch long cores were obtained for characterization. The pore-water chemical composition data, laboratory-scale soil resistivity and other ancillary physical and hydrologic measurements and analyses described in this report are designed to provide a crucial link between direct measurements on sediments and the surface-based electrical-resistivity information obtained via field surveys. A second goal of the sediment characterization was to measure the total and water-leachable concentrations of key contaminants of concern as a function of depth and distance from the footprints of inactive disposal facilities. The total and water-leachable concentrations of key contaminants will be used to update contaminant distribution conceptual models and to provide more data for improving base-line risk predictions and remedial alternative selections. The ERC 'ground truthing' exercise for the individual boreholes showed mixed results. In general, the high concentrations of dissolved salts in the pore waters of sediments from C5923, C5924 and C4191 produced a low resistivity 'target' in the processed resistivity field surveys, and variability could be seen in the resistivity data that could relate to the variability in pore- water concentrations but the correlations (regression R2 were mediocre ranging from 0.2 to 0.7 at best; where perfect correlation is 1.0). The field-based geophysical data also seemed to suffer from a sort of vertigo, where looking down from the ground surface, the target (e.g., maximum pore-water salt concentration) depth was difficult to resolve. The best correlations between the field electrical resistivity

Electrical Resistivity Correlation to Vadose Zone Sediment and Pore-Water Composition for the BC Cribs and Trenches Area

Energy Technology Data Exchange (ETDEWEB)

Serne, R. Jeffrey; Ward, Anderson L.; Um, Wooyong; Bjornstad, Bruce N.; Rucker, Dale F.; Lanigan, David C.; Benecke, Mark W.

2009-06-01

This technical report documents the results of geochemical and soil resistivity characterization of sediment obtained from four boreholes drilled in the BC Cribs and Trench area. Vadose zone sediment samples were obtained at a frequency of about every 2.5 ft from approximately 5 ft bgs to borehole total depth. In total, 505 grab samples and 39 six-inch long cores were obtained for characterization. The pore-water chemical composition data, laboratory-scale soil resistivity and other ancillary physical and hydrologic measurements and analyses described in this report are designed to provide a crucial link between direct measurements on sediments and the surface-based electrical-resistivity information obtained via field surveys. A second goal of the sediment characterization was to measure the total and water-leachable concentrations of key contaminants of concern as a function of depth and distance from the footprints of inactive disposal facilities. The total and water-leachable concentrations of key contaminants will be used to update contaminant distribution conceptual models and to provide more data for improving base-line risk predictions and remedial alternative selections. The ERC “ground truthing” exercise for the individual boreholes showed mixed results. In general, the high concentrations of dissolved salts in the pore waters of sediments from C5923, C5924 and C4191 produced a low resistivity “target” in the processed resistivity field surveys, and variability could be seen in the resistivity data that could relate to the variability in pore- water concentrations but the correlations (regression R2 were mediocre ranging from 0.2 to 0.7 at best; where perfect correlation is 1.0). The field-based geophysical data also seemed to suffer from a sort of vertigo, where looking down from the ground surface, the target (e.g., maximum pore-water salt concentration) depth was difficult to resolve. The best correlations between the field electrical

Fines Classification Based on Sensitivity to Pore-Fluid Chemistry

KAUST Repository

Jang, Junbong; Santamarina, Carlos

2015-01-01

The 75-μm particle size is used to discriminate between fine and coarse grains. Further analysis of fine grains is typically based on the plasticity chart. Whereas pore-fluid-chemistry-dependent soil response is a salient and distinguishing

Determination of pore diameter from rejection measurements with a mixture of oligosaccharides

Energy Technology Data Exchange (ETDEWEB)

Espinoza-Gomez, Heriberto; Rogel-Hernandez, Eduardo [Universidad Autonoma de Baja California-Tijuana, Facultad de Ciencias Quimicas e Ingenieria, Tijuana, BC (Mexico); Lin, Shui Wai [Centro de Graduados e Investigacion del Instituto Tecnologico de Tijuana, Apdo. Postal 1166, Tijuana, BC (Mexico)

2005-04-01

This paper present a method to determine pore diameters and effective transport through membranes using a mixture of oligosaccharides. The results are compared with the Maxwell-Stefan equations. The partition coefficients of the solutes are a function of the pore diameter according to the Ferry equation. Thus, with the pore diameter as the only unknown parameter, rejection is described and the pore diameter is obtained by a Marquardt-Levenberg optimization procedure. (orig.)

Measure of pore size in micro filtration polymeric membrane using ultrasonic technique and artificial neural networks

International Nuclear Information System (INIS)

Lucas, Carla de Souza

2009-01-01

This work presents a study of the pore size in micro filtration polymeric membranes, used in the nuclear area for the filtration of radioactive liquid effluent, in the residual water treatment of the petrochemical industry, in the electronic industry for the ultrapure water production for the manufacture of conductors and laundering of microcircuits and in many other processes of separation. Diverse processes for measures of pores sizes in membranes exist, amongst these, electronic microscopy, of bubble point and mercury intrusion porosimetry, however the majority of these uses destructive techniques, of high cost or great time of analysis. The proposal of this work is to measure so great of pore being used ultrasonic technique in the time domain of the frequency and artificial neural networks. A receiving/generator of ultrasonic pulses, a immersion transducer of 25 MHz was used, a tank of immersion and microporous membranes of pores sizes of 0,2 μm, 0,4 μm, 0,6 μm, 8 μm, 10 μm and 12 μm. The ultrasonic signals after to cover the membrane, come back to the transducer (emitting/receiving) bringing information of the interaction of the signal with the membranes. These signals had been used for the training of neural networks, and these had supplied the necessary precision the distinction of the same ones. Soon after, technique with the one of electronic microscopy of sweepings was made the comparison of this. The experiment showed very resulted next to the results gotten with the MEV, what it indicated that the studied technique is ideal for measure of pore size in membranes for being not destructive and of this form to be able to be used also on-line of production. (author)

Soil physical land degradation processes

Science.gov (United States)

Horn, Rainer

2017-04-01

According to the European Soil Framework Directive (2006) soil compaction is besides water and wind erosion one of the main physical reasons and threats of soil degradation. It is estimated, that 32% of the subsoils in Europe are highly degraded and 18% moderately vulnerable to compaction. The problem is not limited to crop land or forest areas (especially because of non-site adjusted harvesting machines) but is also prevalent in rangelands and grassland, and even in so called natural non-disturbed systems. The main reasons for an intense increase in compacted agricultural or forested regions are the still increasing masses of the machines as well the increased frequency of wheeling under non favorable site conditions. Shear and vibration induced soil deformation enhances the deterioration of soil properties especially if the soil water content is very high and the internal soil strength very low. The same is true for animal trampling in combination with overgrazing of moist to wet pastures which subsequently causes a denser (i.e. reduced proportion of coarse pores with smaller continuity) but still structured soil horizons and will finally end in a compacted platy structure. In combination with high water content and shearing due to trampling therefore results in a complete muddy homogeneous soil with no structure at all. (Krümmelbein et al. 2013) Site managements of arable, forestry or horticulture soils requires a sufficiently rigid pore system which guarantees water, gas and heat exchange, nutrient transport and adsorption as well as an optimal rootability in order to avoid subsoil compaction. Such pore system also guarantees a sufficient microbial activity and composition in order to also decompose the plant etc. debris. It is therefore essential that well structured horizons dominate in soils with at best subangular blocky structure or in the top A- horizons a crumbly structure due to biological activity. In contrast defines the formation of a platy

Soil CO2 flux in response to wheel traffic in a no-till system

Science.gov (United States)

Measurements of soil CO2 flux in the absence of living plants can be used to evaluate the effectiveness of soil management practices for C sequestration, but field CO2 flux is spatially variable and may be affected by soil compaction and percentage of total pore space filled with water (%WFPS). The ...

Concentration Polarization to Measure Nano-pore Accessibility

NARCIS (Netherlands)

Solsona, Miguel; Eijkel, Jan C.T.; Olthuis, Wouter; Papadimitriou, Vasileios; van den Berg, Albert; Abelmann, Leon; Weckhuysen, Bert M.; Nieuwelink, A. E.

2017-01-01

Understanding the deactivation process in porous catalysts is of tremendous economic significance. We demonstrate the feasibility of using the concentration polarization method to obtain the pore accessibility distribution at single particle level for the first time. By using this technique we could

Measurement of normal cervical spinal cord in metrizamide CT myelography

International Nuclear Information System (INIS)

Suzuki, Fumio; Koyama, Tsunemaro; Aii, Heihachirou

1985-01-01

The shape of the spinal cord is the most important factor in diagnosis of spinal disorders by metrizamide CT myelography (met. CT). Even in cases where the spinal cord looks normal in shape its size might be abnormal, for example in cases with spinal cord atrophy, syringomyelia, intramedullary tumor and several other conditions. In detecting the slightest abnormality in such cases, it is absolutely necessary to have in hand the knowledge of the nomal size of the spinal cord at each level. We measured, therefore, the sagittal and transverse diameters of the cervical spinal cord in 55 patients with no known lesions on met. CT (Fig. 1). Comparing our results with those by others, we found some differences as to the size of the spinal cord. We assume that these differences are due to the differences in resolution of the CT scanners used. The size of the spinal cord tends to measure larger with a CT scanner with high resolution than with others. Previous authors reported that the size of the spinal cord would vary by window center settings. Our experimental results indicate, however, that window center settings do not significantly affect the measurements. It is concluded that the normal values of the spinal cord dimensions at each level somewhat differ by CT equipments used. One should have normal values with one's own equipment in hand in order to take full advantage of this sophisticated diagnostic technique. (author)

Ambient dose measurement in some CT departments in Khartoum State

International Nuclear Information System (INIS)

Mohammed, S. A. H.

2012-09-01

Computerized Tomography (CT) is now one of the most important radiological examinations world wide.The frequency of CT examinations is increasing rapidly from 2% of all radiological examinations in some countries a decade age to 10-15% now. During the imaging procedure, staff may expose to a significant dose. Therefore, ambient dose measurement is important in the shortage of regular personal monitoring in sudan. This study intended to evaluate the ambient dose at some CT departments (Medical Military hospital, Alamal National Hospital, Elnelin Diagnostic Center and Modern Medical Centre). These departments were equipped with daul, 16 and 64 multi detector CT machines. A survey meter (Radios) was used to measure ambient doses in three locations: Doors, Control Rooms and Adjacent Rooms. The ambient dose equivalent (scatter dose) was measured at various distances from the isocenter of the CT unit at various angles to establish isodose cartography. The mean and range of radiation at control room is 10.00-0.20 and mean (7.05μSv/hr,) reception 1.0-0 (0.40) and doors 4.00-100.00 (73.5) for height 1 meter above the ground. For height 2 meters at control room 0-10.00 (6,75), reception 0-90.00 (30) at door 9.00-90.00 (49.50). This study confirms that low levels of radiation dose are received by staff during CT imaging and these levels are within safe limits as prescribed by the national and international regulations. (Author)

Measurement of slice sensitivity profile for a 64-slice spiral CT system

International Nuclear Information System (INIS)

Liu Chuanya; Qin Weichang; Wang Wei; Lu Chuanyou

2006-01-01

Objective: To measure and evaluate slice sensitivity profile (SSP) and the full width at half-maximum(FWHM) for a 64-slice spiral CT system. Methods: Using the same CT technique and body mode as those used for clinical CT, delta phantom was scanned with Somatom Sensation 64-slice spiral CT. SSPs and FWHM were measured both with reconstruction slice width of 0.6 mm at pitch=0.50, 0.75, 1.00, 1.25, 1.50 and with reconstruction slice width of 0.6, 1.0, 1.5 mm at pitch=1 respectively. Results: For normal slice width of 0. 6 mm, the measured FWHM, i.e. effective slice width, is 0.67, 0.67, 0.66, 0.69, 0.69 mm at different pitch. All the measured FWHM deviate less than 0.1 mm from the nominal slice width. The measured SSPs are symmetrical, bell-shaped curves without far-reaching tails, and show only slight variations as a function of the spiral pitch. When reconstruction slice width increase, relative SSP become wider. Conclusions: The variation of pitch hardly has effect all on SSP, effective slice width, and z-direction spatial resolution for Sensation 64-slice spiral CT system, which is helpful to optimize CT scanning protocol. (authors)

Changes in CT density-measurement of intraorbital wooden foreign bodies

International Nuclear Information System (INIS)

Otani, Etsuko; Hiyama, Fusako; Machi, Setsuko; Hagihara, Masahiro.

1991-01-01

We examined in vitro changes in CT density-measurement of intraorbital wooden foreign bodies. Dry wooden sticks were immersed in distilled water, saline, and serum. Computerized tomography scans were taken several times during 22 weeks. Scans were taken in room air and in fatty tissue. The CT density-measurement of the central part of the wooden bodies was calculated. That of the dry wood was about 500 HU; all of the wooden foreign bodies became denser during the 22 weeks, with those immersed in distilled water and saline at about 130 HU, and those immersed in serum at about 150 HU. It was confirmed that wood becomes denser after soaking in aqueous environments. The CT density of wood soaked in water depends on the density of wood fiber, and the CT density of the wood fiber itself. (author)

Shallow tillage effects on soil properties for temperate-region hard-setting soils

DEFF Research Database (Denmark)

Schjønning, Per; Thomsen, Ingrid Kaag

2013-01-01

Shallow tillage (ST; typically soil physical properties and hence modifies significantly the conditions for root growth and soil biotic activity as compared to mouldboard ploughing (MP; typically ∼25 cm). At field capacity in the spring, we measured cone...... quoted 1.5 MPa critical limit for root growth. Across the 11 field experiments, the untilled ST soil at 14–18 cm generally had lower ɛa and ka than the mechanically loosened soil at the same depth for MP. Also the specific air permeability (pore organization = ka/ɛa) was lower for ST than for MP. SOC...... penetration resistance (PR) of the top 40 cm soil and sampled intact soil cores (at 0–4 and 14–18 cm depths) in 11 field experiments (4–23% clay) after continued ST and MP management for mostly 4–8 years (two experiments >30 years). Bulk soil was sampled from 0 to ∼20 cm of the MP soil and from the two layers...

New approach to measure soil particulate organic matter in intact samples using X-ray computed micro-tomography

Science.gov (United States)

Kravchenko, Alexandra; Negassa, Wakene; Guber, Andrey; Schmidt, Sonja

2014-05-01

Particulate soil organic matter (POM) is biologically and chemically active fraction of soil organic matter. It is a source of many agricultural and ecological benefits, among which are POM's contribution to C sequestration. Most of conventional research methods for studying organic matter dynamics involve measurements conducted on pre-processed i.e., ground and sieved soil samples. Unfortunately, grinding and sieving completely destroys soil structure, the component crucial for soil functioning and C protection. Importance of a better understanding of the role of soil structure and of the physical protection that it provides to soil C cannot be overstated; and analysis of quantities, characteristics, and decomposition rates of POM in soil samples with intact structure is among the key elements of gaining such understanding. However, a marked difficulty hindering the progress in such analyses is a lack of tools for identification and quantitative analysis of POM in intact soil samples. Recent advancement in applications of X-ray computed micro-tomography (μ-CT) to soil science has given an opportunity to conduct such analyses. The objective of the current study is to develop a procedure for identification and quantitative characterization of POM within intact soil samples using X-ray μ-CT images and to test performance of the proposed procedure on a set of multiple intact soil macro-aggregates. We used 16 4-6 mm soil aggregates collected at 0-15 cm depth from a Typic Hapludalf soil at multiple field sites with diverse agricultural management history. The aggregates have been scanned at SIMBIOS Centre, Dundee, Scotland at 10 micron resolution. POM was determined from the aggregate images using the developed procedure. The procedure was based on combining image pre-processing steps with discriminant analysis classification. The first component of the procedure consisted of image pre-processing steps based on the range of gray values (GV) along with shape and size

In-situ measurements of soil-water conductivity

International Nuclear Information System (INIS)

Murphy, C.E.

1978-01-01

Radionuclides and other environmentally important materials often move in association with water. In terrestrial ecosystems, the storage and movement of water in the soil is of prime importance to the hydrologic cycle of the ecosystem. The soil-water conductivity (the rate at which water moves through the soil) is a necessary input to models of soil-water movement. In situ techniques for measurement of soil-water conductivity have the advantage of averaging soil-water properties over larger areas than most laboratory methods. The in situ techniques also cause minimum disturbance of the soil under investigation. Results of measurements using a period of soil-water drainage after initial wetting indicate that soil-water conductivity and its variation with soil-water content can be determined with reasonable accuracy for the plot where the measurements were made. Further investigations are being carried out to look at variability between plots within a soil type

An inverse analysis reveals limitations of the soil-CO2 profile method to calculate CO2 production and efflux for well-structured soils

Directory of Open Access Journals (Sweden)

M. D. Corre

2010-08-01

Full Text Available Soil respiration is the second largest flux in the global carbon cycle, yet the underlying below-ground process, carbon dioxide (CO2 production, is not well understood because it can not be measured in the field. CO2 production has frequently been calculated from the vertical CO2 diffusive flux divergence, known as "soil-CO2 profile method". This relatively simple model requires knowledge of soil CO2 concentration profiles and soil diffusive properties. Application of the method for a tropical lowland forest soil in Panama gave inconsistent results when using diffusion coefficients (D calculated based on relationships with soil porosity and moisture ("physically modeled" D. Our objective was to investigate whether these inconsistencies were related to (1 the applied interpolation and solution methods and/or (2 uncertainties in the physically modeled profile of D. First, we show that the calculated CO2 production strongly depends on the function used to interpolate between measured CO2 concentrations. Secondly, using an inverse analysis of the soil-CO2 profile method, we deduce which D would be required to explain the observed CO2 concentrations, assuming the model perception is valid. In the top soil, this inversely modeled D closely resembled the physically modeled D. In the deep soil, however, the inversely modeled D increased sharply while the physically modeled D did not. When imposing a constraint during the fit parameter optimization, a solution could be found where this deviation between the physically and inversely modeled D disappeared. A radon (Rn mass balance model, in which diffusion was calculated based on the physically modeled or constrained inversely modeled D, simulated observed Rn profiles reasonably well. However, the CO2 concentrations which corresponded to the constrained inversely modeled D were too small compared to the measurements. We suggest that, in well-structured soils, a missing description of steady state CO2

Detectability of T Measurable diseases in advanced gastric cancer in FDG PET CT

International Nuclear Information System (INIS)

Oh, Sun Young; Cheon, Gi Jeong; Kim, Young Chul; Jeong, Eugene; Kim, Seung Eun; Choe, Jae Gol

2012-01-01

Usefulness of FDG PET CT in monitoring response in locally advanced gastric cancer has been reported. The purpose of this study was to evaluate the related factors to detect measurable diseases in advanced gastric cancer on FDG PET CT. We retrospectively reviewed 38 patients diagnosed as having advanced gastric cancer. We defined the measurable diseases when there was visualized tumor of which maximum standardized uptake value(SUVmax) was higher than 1.35*SUVmax of liver + 2*SD of liver SUV. We evaluated what kinds of factors from the clinicopathologic features were related to identifying measurable diseases. Of 38 patients with advanced gastric cancer, 18 (50%) had measurable tumors on FDG PET CT. Measurable tumors were significantly more frequent in well or moderately differentiated adenocarcinoma (70.5% vs 35.3%, p<0.05), in the tumors located at antrum or angle (66.7% vs 29.4%, p<0.05) and in the elderly group (age of 55 years old or more, 72.0% vs 8.3%, p<0.001) than the others, respectively. By multivariate analysis, age at diagnosis was the only independent predictor for the measurable disease on FDG PET CT. We found that age at diagnosis, as well as histologic types and location of tumors, were the affecting factors to detect measurable disease on FDG PET CT in patients with advanced gastric cancer. Our study suggests that elderly patients of age of 55 years old or more can frequently have T measurable disease on FDG PET CT in advanced gastric cancer and FDG PET CT will be helpful to monitor measurable disease

Assessment of soil sample quality used for density evaluations through computed tomography

International Nuclear Information System (INIS)

Pires, Luiz F.; Arthur, Robson C.J.; Bacchi, Osny O.S.

2005-01-01

There are several methods to measure soil bulk density (ρ s ) like the paraffin sealed clod (PS), the volumetric ring (VR), the computed tomography (CT), and the neutron-gamma surface gauge (SG). In order to evaluate by a non-destructive way the possible modifications in soil structure caused by sampling for the PS and VR methods of ρ s evaluation we proposed to use the gamma ray CT method. A first generation tomograph was used having a 241 Am source and a 3 in x 3 in NaI(Tl) scintillation crystal detector coupled to a photomultiplier tube. Results confirm the effect of soil sampler devices on the structure of soil samples, and that the compaction caused during sampling causes significant alterations of soil bulk density. Through the use of CT it was possible to determine the level of compaction and to make a detailed analysis of the soil bulk density distribution within the soil sample. (author)

Tracking agricultural soil nitric oxide emission variations with novel isotopic measurements

Science.gov (United States)

Miller, D. J.; Chai, J.; Guo, F.; Overby, S.; Dell, C. J.; Karsten, H.; Hastings, M. G.

2016-12-01

Agricultural production systems impact the reactive nitrogen cycle via atmospheric nitrogen emissions including nitric oxide, denoted as total nitrogen oxides (NOx). NOx serve as precursors to ozone and nitrate aerosols, influencing air quality, radiative forcing, and ecosystem health. With recent declines in fuel combustion sources, soil emissions are an increasing contributor to NOx budgets. However, spatially heterogeneous, episodic soil NOx pulses are challenging to constrain and remain highly uncertain. Using a novel hourly resolution soil flux chamber-based NOx collection method, we investigate fertilizer management and climatic controls on cropland soil NOx flux and nitrogen isotopic composition (δ15N-NOx) natural abundance variations with field-based and laboratory measurements. No-till, rain-fed corn plots were sampled daily (triplicate isotope samples per treatment per day) following broadcast and shallow-disk injected dairy manure applications as part of a sustainable dairy cropping study in State College, PA (Penn State University; USDA-ARS). Injected manure plots exhibited median fluxes two times higher with larger spatial variations than that for broadcast manure. Soil emission δ15N-NOx signatures of -45 to -20 ‰ were correlated with flux magnitudes across both treatments. Median δ15N-NOx signatures for injected manure were lower with larger spatial variations (-32 ± 9 ‰) than that for broadcast manure (-24 ± 1.5 ‰). These differences are likely linked with higher NH4+ availability for nitrification with injected manure in contrast with higher NH3 volatilization and higher soil δ15N-NH4+ for broadcast manure. Although NOx fluxes were suppressed 1-2 days after heavy rainfall (>35 % water-filled pore space), δ15N-NOx remained consistent. Controlled laboratory incubation studies will also be presented quantifying links with inorganic substrate and fertilizer δ15N. Our observations suggest that agricultural soil δ15N-NOx signatures are

Active pore space utilization in nanoporous carbon-based supercapacitors: Effects of conductivity and pore accessibility

Science.gov (United States)

Seredych, Mykola; Koscinski, Mikolaj; Sliwinska-Bartkowiak, Malgorzata; Bandosz, Teresa J.

2012-12-01

Composites of commercial graphene and nanoporous sodium-salt-polymer-derived carbons were prepared with 5 or 20 weight% graphene. The materials were characterized using the adsorption of nitrogen, SEM/EDX, thermal analysis, Raman spectroscopy and potentiometric titration. The samples' conductivity was also measured. The performance of the carbon composites in energy storage was linked to their porosity and electronic conductivity. The small pores (<0.7) were found as very active for double layer capacitance. It was demonstrated that when double layer capacitance is a predominant mechanism of charge storage, the degree of the pore space utilization for that storage can be increased by increasing the conductivity of the carbons. That active pore space utilization is defined as gravimetric capacitance per unit pore volume in pores smaller than 0.7 nm. Its magnitude is affected by conductivity of the carbon materials. The functional groups, besides pseudocapacitive contribution, increased the wettability and thus the degree of the pore space utilization. Graphene phase, owing to its conductivity, also took part in an insitu increase of the small pore accessibility and thus the capacitance of the composites via enhancing an electron transfer to small pores and thus imposing the reduction of groups blocking the pores for electrolyte ions.

Impact of Soil Texture on Soil Ciliate Communities

Science.gov (United States)

Chau, J. F.; Brown, S.; Habtom, E.; Brinson, F.; Epps, M.; Scott, R.

2014-12-01

Soil water content and connectivity strongly influence microbial activities in soil, controlling access to nutrients and electron acceptors, and mediating interactions between microbes within and between trophic levels. These interactions occur at or below the pore scale, and are influenced by soil texture and structure, which determine the microscale architecture of soil pores. Soil protozoa are relatively understudied, especially given the strong control they exert on bacterial communities through predation. Here, ciliate communities in soils of contrasting textures were investigated. Two ciliate-specific primer sets targeting the 18S rRNA gene were used to amplify DNA extracted from eight soil samples collected from Sumter National Forest in western South Carolina. Primer sets 121F-384F-1147R (semi-nested) and 315F-959R were used to amplify soil ciliate DNA via polymerase chain reaction (PCR), and the resulting PCR products were analyzed by gel electrophoresis to obtain quantity and band size. Approximately two hundred ciliate 18S rRNA sequences were obtained were obtained from each of two contrasting soils. Sequences were aligned against the NCBI GenBank database for identification, and the taxonomic classification of best-matched sequences was determined. The ultimate goal of the work is to quantify changes in the ciliate community under short-timescale changes in hydrologic conditions for varying soil textures, elucidating dynamic responses to desiccation stress in major soil ciliate taxa.

Measurement of total lung capacity : a comparison of spiral CT and spirometry

International Nuclear Information System (INIS)

Chung, Kyung Il; Park, Kyung Ju; Lee, Eh Hyung; Yune, Heun Young; Suh, Jung Ho; Choe, Kyu Ok; Lim, Tae Hwan; Chung, In Hyuk

1996-01-01

To determine the potential of spiral CT as a functional imaging modality of the lung aside from its proven value in morphological depiction. Spiral CT scan was performed in ten normal female and nine normal male adults (mean age: 39, height: 163 cm, weight: 62 kg ) after single full breath-holding. Three dimensional lung images were reconstructed(minimal threshold value: -1,000HU, maximal threshold values: -150, 250, -350, -450 HU) to obtain total lung volume(TLV) on a histogram. Total lung volume measured by spiral CT was compared with TLV obtained by spirometry. Mean TLV measured by spirometry was 5.62L and TLV measured by CT at maximal threshold values of -150, -250, -350, and -450 HU was 5.53, 5.33, 5.15, and 4.98L, respectively. Mean absolute differences between the modalities of 0.17L(3%), 0.32L(5.6%), 0.48L(8.5%), 0.65L(11.5%) were statistically significant(p<0.001). Linear regression coefficients between the modalities were 0.99, 0.97, 095, and 0.94 and no statistically significant differences in accuracy of threshold levels in the estimation of lung volume(r=0.99, standard error=0.034L in all) were seen. TLV measured by spiral CT closely approximated that measured by spirometry. Spiral CT may be useful as a means of evaluating lung function

Measurements of radon in soil gas

International Nuclear Information System (INIS)

Paschuk, Sergei A.; Correa, Janine Nicolosi; Schelin, Hugo R.; Barbosa, Laercio; Sadula, Tatyana; Matsuzaki, Cristiana A.

2009-01-01

Full text: After the decades of systematic and numerous studies performed at different countries of the World, it has been concluded that radon as well as its progeny is the main cause of lung cancer. It is well known that more than 50% of the effective annual radiation dose received by a human being is related to the radon and its progenies. Among the principle mechanisms that bring the radon inside the dwelling is the soil exhalation as well as exhalation and release from the water. Radon concentration in the soil and its transport (emanation, diffusion, advection and adsorption) to the surface depends on different physical, geological and ambient parameters such as the geology of the area, geochemical composition of the soil, its porosity and permeability, grain size, soil humidity, bottom sediments and inputs from streams, temperature, atmospheric pressure, etc. Since the main part of indoor radon originates in the soil, the measurements of radon concentration in soil gas have to be considered as an important tool and indicator of probable high levels of radon inside the dwellings. Present work describes the radon in soil gas measurements performed during the last two years in cooperation between the Laboratory of Applied Nuclear Physics of the Federal University of Technology (UTFPR), the Nuclear Technology Development Center (CDTN) and the Institute of Radiation Protection and Dosimetry (IRD) from the Brazilian Nuclear Energy Commission (CNEN). Following previously concluded measurements of radon concentration in dwellings and the measurements of 222 Rn activity in drinking water collected at artesian bores of Curitiba urban area, present step of activities has been dedicated to measurements of radon concentration in soil gas. Experimental setup was based on the Professional Radon Monitor (ALPHA GUARD) connected to specially developed for such measurements Soil Gas Probe through the air pump and filter system. The equipment was adjusted with air flow of 0

Pore-scale study on flow and heat transfer in 3D reconstructed porous media using micro-tomography images

International Nuclear Information System (INIS)

Liu, Zhenyu; Wu, Huiying

2016-01-01

Highlights: • The complex porous domain has been reconstructed with the micro CT scan images. • Pore-scale numerical model based on LB method has been established. • The correlations for flow and heat transfer were derived from the predictions. • The numerical approach developed in this work is suitable for complex porous media. - Abstract: This paper presents the numerical study on fluid flow and heat transfer in reconstructed porous media at the pore-scale with the double-population thermal lattice Boltzmann (LB) method. The porous geometry was reconstructed using micro-tomography images from micro-CT scanner. The thermal LB model was numerically tested before simulation and a good agreement was achieved by compared with the existing results. The detailed distributions of velocity and temperature in complex pore spaces were obtained from the pore-scale simulation. The correlations for flow and heat transfer in the specific porous media sample were derived based on the numerical results. The numerical method established in this work provides a promising approach to predict pore-scale flow and heat transfer characteristics in reconstructed porous domain with real geometrical effect, which can be extended for the continuum modeling of the transport process in porous media at macro-scale.

Prediction of the Soil Water Characteristic from Soil Particle Volume Fractions

DEFF Research Database (Denmark)

Naveed, Muhammad; Møldrup, Per; Tuller, Markus

2012-01-01

Modelling water distribution and flow in partially saturated soils requires knowledge of the soil-water characteristic (SWC). However, measurement of the SWC is challenging and time-consuming, and in some cases not feasible. This study introduces two predictive models (Xw-model and Xw......*-model) for the SWC, derived from readily available soil properties such as texture and bulk density. A total of 46 soils from different horizons at 15 locations across Denmark were used for models evaluation. The Xw-model predicts the volumetric water content as a function of volumetric fines content (organic matter...... (organic matter, clay, silt, fine and coarse sand), variably included in the model depending on the pF value. The volumetric content of a particular soil particle size fraction was included in the model if it was assumed to contribute to the pore size fraction still occupied with water at the given p...

Improvement of soil carbon sink by cover crops in olive orchards under semiarid conditions. Influence of the type of soil and weed

Directory of Open Access Journals (Sweden)

F. Márquez-García

2013-05-01

Full Text Available The olive tree is one of the most important crops in Spain, and the main one in the region of Andalusia. Most orchards are rain-fed, with high slopes where conventional tillage (CT is the primary soil management system used. These conditions lead to high erosion and a significant transport of organic carbon (OC. Moreover, soil tillage accelerates the oxidation of the OC. Cover crops (CC are the conservation agriculture (CA approach for woody crops. They are grown in-between tree rows to protect the soil against water erosion and their organic residues also help to increase the soil carbon (C sink. Soil and OC losses associated to the sediment were measured over four seasons (2003-07 using micro-plots for the collection of runoff and sediment in five experimental fields located in rain-fed olive orchards in Andalusia. Two soil management systems were followed, CC and CT. Furthermore, the changes in soil C in both systems were analyzed at a depth of 0-25 cm. CC reduced erosion by 80.5%, and also OC transport by 67.7%. In addition, Cover crops increased soil C sink by 12.3 Mg ha-1 year-1 of carbon dioxide (CO2 equivalent, with respect to CT. CC in rainfed olive orchards in a Mediterranean climate could be an environmental friendly and profitable system for reducing erosion and increasing the soil C sink. However, C fixing rate is not regular, being very high for the initial years after shifting from CT to CC and gradually decreasing over time.

Impact of spatially correlated pore-scale heterogeneity on drying porous media

Science.gov (United States)

Borgman, Oshri; Fantinel, Paolo; Lühder, Wieland; Goehring, Lucas; Holtzman, Ran

2017-07-01

We study the effect of spatially-correlated heterogeneity on isothermal drying of porous media. We combine a minimal pore-scale model with microfluidic experiments with the same pore geometry. Our simulated drying behavior compares favorably with experiments, considering the large sensitivity of the emergent behavior to the uncertainty associated with even small manufacturing errors. We show that increasing the correlation length in particle sizes promotes preferential drying of clusters of large pores, prolonging liquid connectivity and surface wetness and thus higher drying rates for longer periods. Our findings improve our quantitative understanding of how pore-scale heterogeneity impacts drying, which plays a role in a wide range of processes ranging from fuel cells to curing of paints and cements to global budgets of energy, water and solutes in soils.

A pore-size classification for peat bogs derived from unsaturated hydraulic properties

Science.gov (United States)

Weber, Tobias Karl David; Iden, Sascha Christian; Durner, Wolfgang

2017-12-01

In ombrotrophic peatlands, the moisture content of the acrotelm (vadoze zone) controls oxygen diffusion rates, redox state, and the turnover of organic matter. Thus, variably saturated flow processes determine whether peatlands act as sinks or sources of atmospheric carbon, and modelling these processes is crucial to assess effects of changed environmental conditions on the future development of these ecosystems. We show that the Richards equation can be used to accurately describe the moisture dynamics under evaporative conditions in variably saturated peat soil, encompassing the transition from the topmost living moss layer to the decomposed peat as part of the vadose zone. Soil hydraulic properties (SHP) were identified by inverse simulation of evaporation experiments on samples from the entire acrotelm. To obtain consistent descriptions of the observations, the traditional van Genuchten-Mualem model was extended to account for non-capillary water storage and flow. We found that the SHP of the uppermost moss layer reflect a pore-size distribution (PSD) that combines three distinct pore systems of the Sphagnum moss. For deeper samples, acrotelm pedogenesis changes the shape of the SHP due to the collapse of inter-plant pores and an infill with smaller particles. This leads to gradually more homogeneous and bi-modal PSDs with increasing depth, which in turn can serve as a proxy for increasing state of pedogenesis in peatlands. From this, we derive a nomenclature and size classification for the pore spaces of Sphagnum mosses and define inter-, intra-, and inner-plant pore spaces, with effective pore diameters of > 300, 300-30, and 30-10 µm, respectively.

Effects of biopores on the growth and N-uptake of wheat at three levels of soil moisture

International Nuclear Information System (INIS)

Volkmar, K.M.

1996-01-01

Roots grow more rapidly through soil spaces such as vacated root channels than through undisturbed soil. This experiment was conducted to determine the extent to which transfer of nutrients is compromised by gaps between the pore wall and the root. Undisturbed cores were obtained from a no-till Dark Brown Chernozemic soil. The cores were divided into three 2.5-cm-thick segments (3.8-6.3 cm, 7.8-10.3 cm, and 11.75-14.25 cm soil layers). The density 200-500 μm (P200) and 500-1000 μm (P500) diameter pores was visually assessed in each segment. The cores were adjusted to water potentials of -0.01, -0.1 and -1.5 MPa by adding K 15 NO 3 -labelled water. Pots containing wheat (Triticum aestivum) plants were placed on top of the cores and the number of roots that appeared at the bottom of the cores, the root length within the cores, and shoot 15 N content were measured after 72 h. Small pore (P200) density had no effect on root number at any moisture level. Large pore (P500) density correlated positively with root number at 0.10 MPa (r 2 0.57) and -1.5 Mpa (r 2 = 0.68). The equation relating shoot 15 N content and root number had a common slope across all moisture treatments, suggesting that the rates of N-uptake per unit root were not compromised by macropore-assisted root growth at the investigated moisture levels. It is unclear if uptake is directly across the pore or via laterals growing outside the pore wall. N-uptake per unit root length of roots growing through soil pores may be compromised at moderate levels of soil moisture. (author). 14 refs., 1 tab., 3 figs

Using Water and Agrochemicals in the Soil, Crop and Vadose Environment (WAVE Model to Interpret Nitrogen Balance and Soil Water Reserve Under Different Tillage Managements

Directory of Open Access Journals (Sweden)

Zare Narjes

2014-10-01

Full Text Available Applying models to interpret soil, water and plant relationships under different conditions enable us to study different management scenarios and then to determine the optimum option. The aim of this study was using Water and Agrochemicals in the soil, crop and Vadose Environment (WAVE model to predict water content, nitrogen balance and its components over a corn crop season under both conventional tillage (CT and direct seeding into mulch (DSM. In this study a corn crop was cultivated at the Irstea experimental station in Montpellier, France under both CT and DSM. Model input data were weather data, nitrogen content in both the soil and mulch at the beginning of the season, the amounts and the dates of irrigation and nitrogen application. The results show an appropriate agreement between measured and model simulations (nRMSE < 10%. Using model outputs, nitrogen balance and its components were compared with measured data in both systems. The amount of N leaching in validation period were 10 and 8 kgha–1 in CT and DSM plots, respectively; therefore, these results showed better performance of DSM in comparison with CT. Simulated nitrogen leaching from CT and DSM can help us to assess groundwater pollution risk caused by these two systems.

Application of wastewater with high organic load for saline-sodic soil reclamation focusing on soil purification ability

Directory of Open Access Journals (Sweden)

M.A. Kameli

2017-04-01

Full Text Available Fresh water source scarcity in arid and semiarid area is limitation factor for saline-sodic soil reclamation. The reusing of agricultural drainage and industrial wastewater are preferred strategies for combating with this concern. The objective of current study was evaluation in application of industrial sugar manufacture wastewater due to high soluble organic compounds in saline-sodic and sodic soil. Also soil ability in wastewater organic compounds removal was second aim of present study. Saline-sodic and sodic soil sample was leached in soil column by diluted wastewater of amirkabir sugar manufacture in Khuzestan Province of Iran at constant water head. Sodium, electric conductivity and chemical oxygen demand of soil column leachate were measured per each pore volume. The experimental kinetics of wastewater organic compounds on two saline-sodic and sodic soil were also investigated by three pseudo second order, intra particle diffusion and elovich model. The results of current study showed that electric conductivity of saline-sodic soil was decreased to 90% during 3 initial pore volumes, from other side exchangeable sodium percent of saline-sodic and sodic soil decreased 30 and 71 percent, respectively. There were no significant different between wastewater chemical oxygen demand removal by saline-sodic and sodic soil in both batch and column studies. Wastewater chemical oxygen demand was decreased to 35% during pass through soil column. The results showed that the adsorption kinetics of wastewater organic compounds were best fitted by the pseudo-second order model with 99 percent correlation coefficient (r2=0.99%.

Field Test Design Simulations of Pore-Water Extraction for the SX Tank Farm

Energy Technology Data Exchange (ETDEWEB)

Truex, Michael J. [Pacific Northwest National Lab. (PNNL), Richland, WA (United States); Oostrom, Martinus [Pacific Northwest National Lab. (PNNL), Richland, WA (United States)

2013-09-01

A proof of principle test of pore water extraction is being performed by Washington River Protection Solutions for the U.S. Department of Energy, Office of River Protection. This test is being conducted to meet the requirements of Hanford Federal Facility Agreement and Consent Order (HFFACO) (Ecology et al. 1989) Milestone M 045-20, and is described in RPP-PLAN-53808, 200 West Area Tank Farms Interim Measures Investigation Work Plan. To support design of this test, numerical simulations were conducted to help define equipment and operational parameters. The modeling effort builds from information collected in laboratory studies and from field characterization information collected at the test site near the Hanford Site 241-SX Tank Farm. Numerical simulations were used to evaluate pore-water extraction performance as a function of the test site properties and for the type of extraction well configuration that can be constructed using the direct-push installation technique. Output of simulations included rates of water and soil-gas production as a function of operational conditions for use in supporting field equipment design. The simulations also investigated the impact of subsurface heterogeneities in sediment properties and moisture distribution on pore-water extraction performance. Phenomena near the extraction well were also investigated because of their importance for pore-water extraction performance.

Simultaneous measurement of unfrozen water content and ice content in frozen soil using gamma ray attenuation and TDR

Science.gov (United States)

Zhou, Xiaohai; Zhou, Jian; Kinzelbach, Wolfgang; Stauffer, Fritz

2014-12-01

The freezing temperature of water in soil is not constant but varies over a range determined by soil texture. Consequently, the amounts of unfrozen water and ice change with temperature in frozen soil, which in turn affects hydraulic, thermal, and mechanical properties of frozen soil. In this paper, an Am-241 gamma ray source and time-domain reflectometry (TDR) were combined to measure unfrozen water content and ice content in frozen soil simultaneously. The gamma ray attenuation was used to determine total water content. The TDR was used to determine the dielectric constant of the frozen soil. Based on a four-phase mixing model, the amount of unfrozen water content in the frozen soil could be determined. The ice content was inferred by the difference between total water content and unfrozen water content. The gamma ray attenuation and the TDR were both calibrated by a gravimetric method. Water contents measured by gamma ray attenuation and TDR in an unfrozen silt column under infiltration were compared and showed that the two methods have the same accuracy and response to changes of water content. Unidirectional column freezing experiments were performed to apply the combined method of gamma ray attenuation and TDR for measuring unfrozen water content and ice content. The measurement error of the gamma ray attenuation and TDR was around 0.02 and 0.01 m3/m3, respectively. The overestimation of unfrozen water in frozen soil by TDR alone was quantified and found to depend on the amount of ice content. The higher the ice content, the larger the overestimation. The study confirmed that the combined method could accurately determine unfrozen water content and ice content in frozen soil. The results of soil column freezing experiments indicate that total water content distribution is affected by available pore space and the freezing front advance rate. It was found that there is similarity between the soil water characteristic and the soil freezing characteristic of

Effects of sand compaction and mixing on pore structure and the unsaturated soil hydraulic properties

NARCIS (Netherlands)

Mahmoodlu, Mojtaba Ghareh; Raoof, A.; Sweijen, T.; van Genuchten, M. Th

2016-01-01

The hydraulic properties of unsaturated porous media very much depend on their pore structure as defined by the size, arrangement, and connectivity of pores. Several empirical and quasi-empirical approaches have been used over the years to derive pore structure information from the particle size

Transport properties and pore-network structure in variably-saturated Sphagnum peat soil

DEFF Research Database (Denmark)

Hamamoto, Shoichiro; Dissanayaka, Shiromi Himalika; Kawamoto, K.

2016-01-01

Gas and water transport in peat soil are of increasing interest because of their potentially large environmental and climatic effects under different types of land use. In this research, the water retention curve (WRC), gas diffusion coefficient (Dg) and air and water permeabilities (ka and kw......) of layers in peat soil from two profiles were measured under different moisture conditions. A two-region Archie's Law (2RAL)-type model was applied successfully to the four properties; the reference point was taken at -9.8kPa of soil-water matric potential where volume shrinkage typically started to occur....... For WRC in the very decomposed peat soil, the 2RAL saturation exponents (n) obtained for both the wetter (nw) and drier regions (nd) were smaller than those for the less decomposed peat. For Dg, the saturation exponent in the wetter region was larger than that in the drier one for all layers, which...

Preliminary Investigation on the Behavior of Pore Air Pressure During Rainfall Infiltration

Science.gov (United States)

Ashraf Mohamad Ismail, Mohd; Min, Ng Soon; Hasliza Hamzah, Nur; Hazreek Zainal Abidin, Mohd; Madun, Aziman; Tajudin, Saiful Azhar Ahmad

2018-04-01

This paper focused on the preliminary investigation of pore air pressure behaviour during rainfall infiltration in order to substantiate the mechanism of rainfall induced slope failure. The actual behaviour or pore air pressure during infiltration is yet to be clearly understood as it is regularly assumed as atmospheric. Numerical modelling of one dimensional (1D) soil column was utilized in this study to provide a preliminary insight of this highlighted uncertainty. Parametric study was performed by using rainfall intensities of 1.85 x 10-3m/s and 1.16 x 10-4m/s applied on glass beads to simulate intense and modest rainfall conditions. Analysis results show that the high rainfall intensity causes more development of pore air pressure compared to low rainfall intensity. This is because at high rainfall intensity, the rainwater cannot replace the pore air smoothly thus confining the pore air. Therefore, the effect of pore air pressure has to be taken into consideration particularly during heavy rainfall.

Direct assessment of lung function in COPD using CT densitometric measures

International Nuclear Information System (INIS)

Gu, Suicheng; Leader, Joseph; Gur, David; Pu, Jiantao; Zheng, Bin; Chen, Qihang; Sciurba, Frank; Kminski, Naftali

2014-01-01

To investigate whether lung function in patients with chronic obstructive pulmonary disease (COPD) can be directly predicted using CT densitometric measures and assess the underlying prediction errors as compared with the traditional spirometry-based measures. A total of 600 CT examinations were collected from a COPD study. In addition to the entire lung volume, the extent of emphysema depicted in each CT examination was quantified using density mask analysis (densitometry). The partial least square regression was used for constructing the prediction model, where a repeated random split-sample validation was employed. For each split, we randomly selected 400 CT exams for training (regression) purpose and the remaining 200 exams for assessing performance in prediction of lung function (e.g., FEV1 and FEV1/FVC) and disease severity. The absolute and percentage errors as well as their standard deviations were computed. The averaged percentage errors in prediction of FEV1, FEV1/FVC%, TLC, RV/TLC% and DLco% predicted were 33%, 17%, 9%, 18% and 23%, respectively. When classifying the exams in terms of disease severity grades using the CT measures, 37% of the subjects were correctly classified with no error and 83% of the exams were either correctly classified or classified into immediate neighboring categories. The linear weighted kappa and quadratic weighted kappa were 0.54 (moderate agreement) and 0.72 (substantial agreement), respectively. Despite the existence of certain prediction errors in quantitative assessment of lung function, the CT densitometric measures could be used to relatively reliably classify disease severity grade of COPD patients in terms of GOLD. (paper)

Geophysical characterization of soil moisture spatial patterns in a tillage experiment

Science.gov (United States)

Martinez, G.; Vanderlinden, K.; Giráldez, J. V.; Muriel, J. L.

2009-04-01

Knowledge on the spatial soil moisture pattern can improve the characterisation of the hydrological response of either field-plots or small watersheds. Near-surface geophysical methods, such as electromagnetic induction (EMI), provide a means to map such patterns using non-invasive and non-destructive measurements of the soil apparent electrical conductivity (ECa. In this study ECa was measured using an EMI sensor and used to characterize spatially the hydrologic response of a cropped field to an intense shower. The study site is part of a long-term tillage experiment in Southern Spain in which Conventional Tillage (CT), Direct Drilling (DD) and Minimum Tillage (MT) are being evaluated since 1982. Soil ECa was measured before and after a rain event of 115 mm, near the soil surface and at deeper depth (ECas and ECad, respectively) using the EM38-DD EMI sensor. Simultaneously, elevation data were collected at each sampling point to generate a Digital Elevation Model (DEM). Soil moisture during the first survey was close to permanent wilting point and near field capacity during the second survey. For the first survey, both ECas and ECad, were higher in the CT and MT than in the DD plots. After the rain event, rill erosion appeared only in CT and MT plots were soil was uncovered, matching the drainage lines obtained from the DEM. Apparent electrical conductivity increased all over the field plot with higher increments in the DD plots. These plots showed the highest ECas and ECad values, in contrast to the spatial pattern found during the first sampling. Difference maps obtained from the two ECas and ECad samplings showed a clear difference between DD plots and CT and MT plots due to their distinct hydrologic response. Water infiltration was higher in the soil of the DD plots than in the MT and CT plots, as reflected by their ECad increment. Higher ECa increments were observed in the depressions of the terrain, where water and sediments accumulated. On the contrary, the

A comprehensive review of radon emanation measurements for mineral, rock, soil, mill tailing and fly ash

International Nuclear Information System (INIS)

Sakoda, Akihiro; Ishimori, Yuu; Yamaoka, Kiyonori

2011-01-01

To our knowledge, this paper is the most comprehensive review to cover most studies, published in the past three decades at least, of radon emanation measurements. The radon emanation fraction, a possibility of radon atoms generated in a material escaping from its grains, has been widely measured for a variety of materials. The aim of this review is to organize a huge number of such data accumulated. The representative values of the emanation fraction for minerals, rocks, soils, mill tailings and fly ashes were derived to be 0.03, 0.13, 0.20, 0.17 and 0.03, respectively. Current knowledge of the emanation processes was also summarized to discuss their affected factors. - Highlights: → Recent radon emanation measurements were thoroughly reviewed. → Averages of radon emanation fractions: 0.03 (mineral), 0.13 (rock), 0.20 (soil), 0.17 (mill tailing) and 0.03 (fly ash). → Grain-size effect was not significantly found for size larger than 1 μm. → Pore water generally enhances the emanation fraction by a factor of 5 or less. → Definition of 'radon emanation' should be shared among researchers.

Organic soil production from urban soil, spent mushroom substrate, and other additives

Science.gov (United States)

Pham, Nhung Thi Ha

2017-09-01

In recent years, spent mushroom substrate (SMS) is becoming the huge problem in environmental pollution issues from mushroom production. However, SMS is also a nutrient-rich ogranic material with available nutrients and high porosity. Therefore, the value of products made from SMS should be exploited to take full advantage of agricultural by-product, support organic agriculture development without environmental pollution. The research has built 5 experimental formulas (4 mixed formulas and 1 control formulas with only urban soil). The analysis results of soil samples from mixed formulas and the control formula witness a significant increase in moisture and OM of mixed formulas (moisture from 36-42%, OM from 5.5-6.9%) after 20 treatment days, and N-P-K contents are also improved remarkably. 60 days later, soil nutrients in mixed formulas continue to rise, with highest OM (8.679%) at CT1; N (0.154%) at CT4; K2O (0,698%) and P2O5 (0,172%) at CT3, in addition, heavy metal contents in all formulas are under standard limit. Synthetic assessment of all norms indicates that the best organic soil product comes from CT3. The pak choi planting experiments are performed show that the growth of plants cultivated on organic soil products made from mixed formulas are much better than plants are grown on initially soil, and they also have no pestilent insect. Specially, pak choi planted on organic soil from CT3 have sharp developing with excellent tolerance ability, quantity and area of leaves are high. Thus, CT3 is the most suitable formula to increase soil nutrients, to solve spent mushroom subtrate streament problems after harvest, and for sustainable agricultural development.

Study of 222Rn variations in the soil air

International Nuclear Information System (INIS)

Holy, K.; Boehm, R.; Matos, M.; Polaskova, A.; Hola, O.

1998-01-01

A significant source of radon in the indoor atmosphere is represented by 222 Rn in the soil air, ie., by the fraction of radon atoms produced by alpha decay of 226 Ra in soil grains that escaped into soil pores. In the paper the results are presented of a three year monitoring of radon in soil air, using a 125 ml Lucas type scintillation cell. Radon concentration depth profiles in the soil in various seasons of the year were also measured, and saturated concentration of radon in soil air was found at a depth of about 2 m. Monthly variations in the radon concentration were observed over several months and the possible causes of the variations are discussed. Daily courses of radon concentration were also measured and the results are presented. (A.K.)

Diffusion coefficients of radon in candidate soils for covering uranium mill tailings

International Nuclear Information System (INIS)

Kalkwarf, D.R.; Silker, W.B.

1983-10-01

Diffusion coefficients were measured for radon in 34 soils that had been identified by uranium mill personnel as candidate soils for covering their tailings piles in order to reduce radon emission. The coefficients referred to diffusion in the total pore space of the soils. They were measured by a steady-state method using soil columns compacted to greater than 80% of their Proctor maximum packing densities, but with moisture contents generally less than would be expected at a tailings site. Three published empirical equations relating diffusion coefficients to soil moisture and porosity were tested with these data. The best fir was obtained with the equation: D = 0.70 exp [-4(m-mP 2 +m 5 )] in which P is the dry porosity of the soil and m is its moisture saturation, i.e. the fraction of pore volume filled with water. This equation was used to extrapolate measured coefficients to values expected at soil-moisture contents representative of tailings sites in the western United States. Extrapolated values for silty sands and clayey sands range from 0.004 to 0.06 cm 2 /s where w, the weight ratio of water to dry soil, is expected to vary from 0.04 to 0.09. Values for inorganic silts and clays ranged from 0.001 to 0.02 cm 2 /s where w is expected to vary from 0.10 to 0.13. 8 references, 1 figure, 1 table

Quantitative measurement of lung density with x-ray CT and positron CT, (2)

International Nuclear Information System (INIS)

Ito, Kengo; Ito, Masatoshi; Kubota, Kazuo

1985-01-01

Lung density was quantitatively measured on six diseased patients with X-ray CT (XCT) and Positron CT(PCT). The findings are as follows: In the silicosis, extravascular lung density was found to be remarkably increased compared to normals (0.29gcm -3 ), but blood volume was in normal range. In the post-irradiated lung cancers, extravascular lung density increased in the irradiated sites compared to the non-irradiated opposite sites, and blood volume varied in each case. In a patient with chronic heart failure, blood volume decreased (0.11mlcm -3 ) with increased extravascular lung density (0.23gcm -3 ). In the chronic obstructive pulmonary disease, both extravascular lung density and blood volume decreased (0.11gcm -3 and 0.10mlcm -3 respectively). Lung density measured with XCT was constantly lower than that with PCT in all cases. But changes in the values of lung density measured, correlated well with each other. In conclusion, the method presented here may clarify the etiology of the diffuse pulmonary diseases, and be used to differentiate and grade the diseases. (author)

GEOPHYSICAL PROPERTIES OF SOILS

KAUST Repository

Santamarina, Carlos

2016-12-01

Low energy perturbations used in geophysical methods provide insightful information about constant-fabric soil properties and their spatial variability. There are causal links between soil type, index properties, elastic wave velocity, electromagnetic wave parameters and thermal properties. Soil type relates to the stress-dependent S-wave velocity, thermal and electrical conductivity and permittivity. The small strain stiffness reflects the state of stress, the extent of diagenetic cementation and/or freezing. Pore fluid chemistry, fluid phase and changes in either fluid chemistry or phase manifest through electromagnetic measurements. The volumetric water content measured with electromagnetic techniques is the best predictor of porosity if the water saturation is 100%. Changes in water saturation alter the P-wave velocity when Srà100%, the S-wave velocity at intermediate saturations, and the thermal conductivity when the saturation is low Srà0%. Finally, tabulated values suffice to estimate heat capacity and latent heat for engineering design, however thermal conductivity requires measurements under proper field conditions.

Evaluation of pore structures and cracking in cement paste exposed to elevated temperatures by X-ray computed tomography

Energy Technology Data Exchange (ETDEWEB)

Kim, Kwang Yeom, E-mail: kimky@kict.re.kr [Korea Institute of Construction Technology, 283 Goyangdae-ro, Ilsanseo-gu, Goyang 411-712 (Korea, Republic of); Yun, Tae Sup, E-mail: taesup@yonsei.ac.kr [School of Civil and Environmental Engineering, Yonsei University, 50 Yonsei-ro, Seodaemun-gu, Seoul 120-749 (Korea, Republic of); Park, Kwang Pil, E-mail: bamtol97@kict.re.kr [Korea Institute of Construction Technology, 283 Goyangdae-ro, Ilsanseo-gu, Goyang 411-712 (Korea, Republic of)

2013-08-15

When cement-based materials are exposed to the high temperatures induced by fire, which can rapidly cause temperatures of over 1000 °C, the changes in pore structure and density prevail. In the present study, mortar specimens were subjected to a series of increasing temperatures to explore the temperature-dependent evolution of internal pore structure. High-performance X-ray computed tomography (CT) was used to observe the evolution of temperature-induced discontinuities at the sub-millimeter level. X-ray diffraction (XRD) and scanning electron microscopy (SEM) were employed to investigate the cause of physical changes in the heated mortar specimens. Results exhibit the changes in pore structure caused by elevated temperatures, and thermally induced fractures. We discuss the progressive formation of thermally induced fracture networks, which is a prerequisite for spalling failure of cement-based materials by fire, based on visual observations of the 3D internal structures revealed by X-ray CT.

Evaluation of pore structures and cracking in cement paste exposed to elevated temperatures by X-ray computed tomography

International Nuclear Information System (INIS)

Kim, Kwang Yeom; Yun, Tae Sup; Park, Kwang Pil

2013-01-01

When cement-based materials are exposed to the high temperatures induced by fire, which can rapidly cause temperatures of over 1000 °C, the changes in pore structure and density prevail. In the present study, mortar specimens were subjected to a series of increasing temperatures to explore the temperature-dependent evolution of internal pore structure. High-performance X-ray computed tomography (CT) was used to observe the evolution of temperature-induced discontinuities at the sub-millimeter level. X-ray diffraction (XRD) and scanning electron microscopy (SEM) were employed to investigate the cause of physical changes in the heated mortar specimens. Results exhibit the changes in pore structure caused by elevated temperatures, and thermally induced fractures. We discuss the progressive formation of thermally induced fracture networks, which is a prerequisite for spalling failure of cement-based materials by fire, based on visual observations of the 3D internal structures revealed by X-ray CT

Influence of pore water in the seabed on dynamic response of offshore wind turbines on monopiles

DEFF Research Database (Denmark)

Bayat, Mehdi; Andersen, Lars Vabbersgaard; Ibsen, Lars Bo

2017-01-01

Highlights •Sandy soil can present reduction of soil stiffness and maximum value of damping. •Equivalent dashpot and mass at the pile cap are highly dependent on the soil type. •Dynamic soil stiffness for offshore monopile foundation is calculated. •Soil damping around offshore monopile wind turb...... turbine foundation is calculated. •The effect of pore pressure and load frequency is illustrated....

High-resolution synchrotron imaging shows that root hairs influence rhizosphere soil structure formation.

Science.gov (United States)

Koebernick, Nicolai; Daly, Keith R; Keyes, Samuel D; George, Timothy S; Brown, Lawrie K; Raffan, Annette; Cooper, Laura J; Naveed, Muhammad; Bengough, Anthony G; Sinclair, Ian; Hallett, Paul D; Roose, Tiina

2017-10-01

In this paper, we provide direct evidence of the importance of root hairs on pore structure development at the root-soil interface during the early stage of crop establishment. This was achieved by use of high-resolution (c. 5 μm) synchrotron radiation computed tomography (SRCT) to visualise both the structure of root hairs and the soil pore structure in plant-soil microcosms. Two contrasting genotypes of barley (Hordeum vulgare), with and without root hairs, were grown for 8 d in microcosms packed with sandy loam soil at 1.2 g cm -3 dry bulk density. Root hairs were visualised within air-filled pore spaces, but not in the fine-textured soil regions. We found that the genotype with root hairs significantly altered the porosity and connectivity of the detectable pore space (> 5 μm) in the rhizosphere, as compared with the no-hair mutants. Both genotypes showed decreasing pore space between 0.8 and 0.1 mm from the root surface. Interestingly the root-hair-bearing genotype had a significantly greater soil pore volume-fraction at the root-soil interface. Effects of pore structure on diffusion and permeability were estimated to be functionally insignificant under saturated conditions when simulated using image-based modelling. © 2017 The Authors. New Phytologist © 2017 New Phytologist Trust.

Dynamic Pore-Scale Imaging of Reactive Transport in Heterogeneous Carbonates at Reservoir Conditions Across Multiple Dissolution Regimes

Science.gov (United States)

Menke, H. P.; Bijeljic, B.; Andrew, M. G.; Blunt, M. J.

2014-12-01

Sequestering carbon in deep geologic formations is one way of reducing anthropogenic CO2 emissions. When supercritical CO2 mixes with brine in a reservoir, the acid generated has the potential to dissolve the surrounding pore structure. However, the magnitude and type of dissolution are condition dependent. Understanding how small changes in the pore structure, chemistry, and flow properties affect dissolution is paramount for successful predictive modelling. Both 'Pink Beam' synchrotron radiation and a Micro-CT lab source are used in dynamic X-ray microtomography to investigate the pore structure changes during supercritical CO2 injection in carbonate rocks of varying heterogeneity at high temperatures and pressures and various flow-rates. Three carbonate rock types were studied, one with a homogeneous pore structure and two heterogeneous carbonates. All samples are practically pure calcium carbonate, but have widely varying rock structures. Flow-rate was varied in three successive experiments by over an order of magnitude whlie keeping all other experimental conditions constant. A 4-mm carbonate core was injected with CO2-saturated brine at 10 MPa and 50oC. Tomographic images were taken at 30-second to 20-minute time-resolutions during a 2 to 4-hour injection period. A pore network was extracted using a topological analysis of the pore space and pore-scale flow modelling was performed directly on the binarized images with connected pathways and used to track the altering velocity distributions. Significant differences in dissolution type and magnitude were found for each rock type and flowrate. At the highest flow-rates, the homogeneous carbonate was seen to have predominately uniform dissolution with minor dissolution rate differences between the pores and pore throats. Alternatively, the heterogeneous carbonates which formed wormholes at high flow rates. At low flow rates the homogeneous rock developed wormholes, while the heterogeneous samples showed evidence

Urban waste compost: Effects on physical, chemical, and biochemical soil properties

Energy Technology Data Exchange (ETDEWEB)

Giusquiani, P.L.; Gigliotti, G.; Businelli, D. [Istituto di Chimica Agraria dell`Universita, Perugia (Italy)] [and others

1995-01-01

A long-term field experiment was conducted to determine the effect of the additions of urban waste compost on the physical and chemical properties and enzymatic activities in a calcareous soil (Fluventic Xerochrept). Total Porosity (pores >50 pm measured on thin soil sections from undisturbed samples by image analysis) was greater in the plots treated with compost than the control plots due to a larger amount of elongated pores. In the amended plots total and humified organic C, Pb, Cu, and Zn showed a significant increase compared with nonamended plots. Enzymatic activities (L-asparaginase, arylsulphatase, dehydrogenase, phosphodiesterase, and alkaline phosphomonoesterase) were significantly enhanced by the compost addition thus indicating no inhibiting influence of the heavy metals present. The increased levels of the arylsulphatase, dehydrogenase, phosphodiesterase, and phosphomonoesterase activities were significantly correlated with total porosity: the first three with pores ranging from 50 to 1000 {mu}m, mainly with pores 50 to 200 {mu}m in size and phosphomonoesterase only with pores whose size was <500 {mu}m. L-asparaginase activity was not correlated with porosity. Only arylsulphatase, dehydrogenase, and phosphodiesterase were negatively correlated with bulk density. 44 refs., 4 figs., 6 tabs.