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Sample records for combining choropleth maps

  1. Generating a Danish raster-based topsoil property map combining choropleth maps and point information

    DEFF Research Database (Denmark)

    Greve, Mogens H.; Greve, Mette B.; Bøcher, Peder K.

    2007-01-01

    The Danish environmental authorities have posed a soil type dependent restriction on the application of nitrogen. The official Danish soil map is a choropleth topsoil map classifying the agricultural land into eight classes. The use of the soil map has shown that the maps have serious...... classification flaws. The objective of this work is to compile a continuous national topsoil texture map to replace the old topsoil map. Approximately 45,000 point samples were interpolated using ordinary kriging in 250 m x 250 m cells. To reduce variability and to obtain more homogeneous strata, the samples...... were stratified according to landscape types. Five new soil texture maps were compiled; one for each of the five textural classes, and a new categorical soil type map was compiled using the old classification system. Both the old choropleth map and the new continuous soil maps were compared to 354...

  2. ASSESSING STUDENTS’ COMPETENCE IN DEVELOPING CHOROPLETH MAPS COMBINED WITH DIAGRAM MAPS

    Directory of Open Access Journals (Sweden)

    GABRIELA OSACI-COSTACHE

    2015-01-01

    Full Text Available Choropleth maps combined with diagram maps are frequently used in geography. For this reason, based on the maps developed by students, the study aims at the following: identifying and analyzing the errors made by the students; establishing and analyzing the competence level of the students; identifying the causes that led to these errors; and finding the best solutions to improve both the educational process aiming at the formation of this kind of competences and the students’ results. The map assessment was accomplished during two academic years (2013-2014 and 2014-2015, in the aftermath of the activities meant to train the competence. We assessed 105 maps prepared by the students in Cartography (Faculty of Geography, University of Bucharest based on an analytical evaluation grid, with dichotomous scale, comprising 15 criteria. This tool helped us identify the errors made by the students, as well as their competence level. By applying a questionnaire, we identified the source of the errors from the students’ perspective, while by comparing the errors and the competence levels at the end of the two academic years we were able to come up with potential solutions for the improvement of the teaching and learning process.

  3. Choropleth map legend design for visualizing community health disparities

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    Cromley Ellen K

    2009-09-01

    Full Text Available Abstract Background Disparities in health outcomes across communities are a central concern in public health and epidemiology. Health disparities research often links differences in health outcomes to other social factors like income. Choropleth maps of health outcome rates show the geographical distribution of health outcomes. This paper illustrates the use of cumulative frequency map legends for visualizing how the health events are distributed in relation to social characteristics of community populations. The approach uses two graphs in the cumulative frequency legend to highlight the difference between the raw count of the health events and the raw count of the social characteristic like low income in the geographical areas of the map. The approach is applied to mapping publicly available data on low birth weight by town in Connecticut and Lyme disease incidence by town in Connecticut in relation to income. The steps involved in creating these legends are described in detail so that health analysts can adopt this approach. Results The different health problems, low birth weight and Lyme disease, have different cumulative frequency signatures. Graphing poverty population on the cumulative frequency legends revealed that the poverty population is distributed differently with respect to the two different health problems mapped here. Conclusion Cumulative frequency legends can be useful supplements for choropleth maps. These legends can be constructed using readily available software. They contain all of the information found in standard choropleth map legends, and they can be used with any choropleth map classification scheme. Cumulative frequency legends effectively communicate the proportion of areas, the proportion of health events, and/or the proportion of the denominator population in which the health events occurred that falls within each class interval. They illuminate the context of disease through graphing associations with other

  4. Dynamic Data Visualization with Weave and Brain Choropleths.

    Directory of Open Access Journals (Sweden)

    Dianne Patterson

    Full Text Available This article introduces the neuroimaging community to the dynamic visualization workbench, Weave (https://www.oicweave.org/, and a set of enhancements to allow the visualization of brain maps. The enhancements comprise a set of brain choropleths and the ability to display these as stacked slices, accessible with a slider. For the first time, this allows the neuroimaging community to take advantage of the advanced tools already available for exploring geographic data. Our brain choropleths are modeled after widely used geographic maps but this mashup of brain choropleths with extant visualization software fills an important neuroinformatic niche. To date, most neuroinformatic tools have provided online databases and atlases of the brain, but not good ways to display the related data (e.g., behavioral, genetic, medical, etc. The extension of the choropleth to brain maps allows us to leverage general-purpose visualization tools for concurrent exploration of brain images and related data. Related data can be represented as a variety of tables, charts and graphs that are dynamically linked to each other and to the brain choropleths. We demonstrate that the simplified region-based analyses that underlay choropleths can provide insights into neuroimaging data comparable to those achieved by using more conventional methods. In addition, the interactive interface facilitates additional insights by allowing the user to filter, compare, and drill down into the visual representations of the data. This enhanced data visualization capability is useful during the initial phases of data analysis and the resulting visualizations provide a compelling way to publish data as an online supplement to journal articles.

  5. Web mapping: tools and solutions for creating interactive maps of forestry interest

    Directory of Open Access Journals (Sweden)

    Notarangelo G

    2011-12-01

    Full Text Available The spread of geobrowsers as tools for displaying geographically referenced information provides insights and opportunities to those who, not being specialists in Geographic Information Systems, want to take advantage from exploration and communication power offered by these software. Through the use of web services such as Google Maps and the use of suitable markup languages, one can create interactive maps starting from highly heterogeneous data and information. These interactive maps can also be easily distributed and shared with Internet users, because they do not need to use proprietary software nor special skills but only a web browser. Unlike the maps created with GIS, whose output usually is a static image, the interactive maps retain all their features to users advantage. This paper describes a web application that, using the Keyhole Markup Language and the free service of Google Maps, produces choropleth maps relating to some forest indicators estimated by the last Italian National Forest Inventory. The creation of a map is done through a simple and intuitive interface. The maps created by users can be downloaded as KML file and can be viewed or modified via the freeware application Google Earth or free and open source GIS software like Quantum GIS. The web application is free and available at www.ricercaforestale.it.

  6. Socioeconomic and Cultural Patterns in Heat Consumption

    DEFF Research Database (Denmark)

    Reiter, Ida Maria

    % decrease in the Copenhagen heat consumption in 2025 compared to 2010. Using a combination of choropleth maps, Pearson’s R, and regression analyses, the total effects as well as direct effects of socioeconomic and cultural variables on heat consumption per capita are analysed using aggregated and averaged...

  7. Identifying Socioeconomic and Cultural Patterns in the Heat Consumption of Copenhagen Households

    DEFF Research Database (Denmark)

    Reiter, Ida Maria; Hansen, Henning Sten

    2017-01-01

    out which household types need political targeting in order to reach the goal of a 20% decrease in the Copenhagen heat consumption in 2025 compared to 2010. Using a combination of choropleth maps, Pearson’s R, and regression analyses, the total effects as well as direct effects of socioeconomic...

  8. Complex motion of elevators in piecewise map model combined with circle map

    Science.gov (United States)

    Nagatani, Takashi

    2013-11-01

    We study the dynamic behavior in the elevator traffic controlled by capacity when the inflow rate of passengers into elevators varies periodically with time. The dynamics of elevators is described by the piecewise map model combined with the circle map. The motion of the elevators depends on the inflow rate, its period, and the number of elevators. The motion in the piecewise map model combined with the circle map shows a complex behavior different from the motion in the piecewise map model.

  9. Ethnic Maps: Between Reality and Propaganda

    Directory of Open Access Journals (Sweden)

    Mladen Klemenčić

    2006-12-01

    Full Text Available Ethnic maps provide insight into the ethnically complex populations of certain areas. They are a cartographic way of portraying a part of geographic reality. Southeastern Europe appears as an ideal area for ethnic maps drawers: there is a variety of different ethnic groups living in a relatively small area. Moreover, political boundaries often do not correspond with so-called ethnic borders, i.e. divisions between majority areas of different nations and/or ethnic groups. The history of South-Eastern Europe offers a number of examples of ethnic maps drawing and their use in political context. The paper focused on ethnic maps drawn and published in the context of the break-up of Yugoslav federation during the first half of the 1990’s. The maps were produced mainly by scientific institutions or under the supervision of such institutions or experts, but always with the specific goal to back and justify political standpoints of their respective country's governments during a turbulent period of geopolitical change and transition. Generally, figures and statistics were presented professionally and correctly. Map authors and compilers did not try to falsify figures. The degree of intent in mapmaking is registered primarily through the choice of cartographic technique, including certain elements of the map design (choice of colours. In that regard, one can identify a technique favoured by Croatian sources (pie charts and another one often used by Serbian mapmakers (choropleth maps. Maps were understood to be powerful media tools and influential visual images that could be used to create a particular perception.

  10. Multipurpose prevention technologies for sexual and reproductive health: mapping global needs for introduction of new preventive products.

    Science.gov (United States)

    Schelar, Erin; Polis, Chelsea B; Essam, Timothy; Looker, Katharine J; Bruni, Laia; Chrisman, Cara J; Manning, Judy

    2016-01-01

    Worldwide, women face sexual and reproductive health (SRH) risks including unintended pregnancy and sexually transmitted infections (STIs) including HIV. Multipurpose prevention technologies (MPTs) combine protection against two or more SRH risks into one product. Male and female condoms are the only currently available MPT products, but several other forms of MPTs are in development. We examined the global distribution of selected SRH issues to determine where various risks have the greatest geographical overlap. We examined four indicators relevant to MPTs in development: HIV prevalence, herpes simplex virus type 2 prevalence (HSV-2), human papillomavirus prevalence (HPV) and the proportion of women with unmet need for modern contraception. Using ArcGIS Desktop, we mapped these indicators individually and in combination on choropleth and graduated symbol maps. We conducted a principal components analysis to reduce data and enable visual mapping of all four indicators on one graphic to identify overlap. Our findings document the greatest overlapping risks in Sub-Saharan Africa, and we specify countries in greatest need by specific MPT indication. These results can inform strategic planning for MPT introduction, market segmentation and demand generation; data limitations also highlight the need for improved (non-HIV) STI surveillance globally. MPTs are products in development with the potential to empower women to prevent two or more SRH risks. Geographic analysis of overlapping SRH risks demonstrates particularly high need in Sub-Saharan Africa. This study can help to inform strategic planning for MPT introduction, market segmentation and demand generation. Copyright © 2016 The Authors. Published by Elsevier Inc. All rights reserved.

  11. K-maps: a vehicle to an optimal solution in combinational logic ...

    African Journals Online (AJOL)

    K-maps: a vehicle to an optimal solution in combinational logic design problems using digital multiplexers. ... Abstract. Application of Karnaugh maps (K-Maps) for the design of combinational logic circuits and sequential logic circuits is a subject that has been widely discussed. However, the use of K-Maps in the design of ...

  12. Synergy Maps: exploring compound combinations using network-based visualization.

    Science.gov (United States)

    Lewis, Richard; Guha, Rajarshi; Korcsmaros, Tamás; Bender, Andreas

    2015-01-01

    The phenomenon of super-additivity of biological response to compounds applied jointly, termed synergy, has the potential to provide many therapeutic benefits. Therefore, high throughput screening of compound combinations has recently received a great deal of attention. Large compound libraries and the feasibility of all-pairs screening can easily generate large, information-rich datasets. Previously, these datasets have been visualized using either a heat-map or a network approach-however these visualizations only partially represent the information encoded in the dataset. A new visualization technique for pairwise combination screening data, termed "Synergy Maps", is presented. In a Synergy Map, information about the synergistic interactions of compounds is integrated with information about their properties (chemical structure, physicochemical properties, bioactivity profiles) to produce a single visualization. As a result the relationships between compound and combination properties may be investigated simultaneously, and thus may afford insight into the synergy observed in the screen. An interactive web app implementation, available at http://richlewis42.github.io/synergy-maps, has been developed for public use, which may find use in navigating and filtering larger scale combination datasets. This tool is applied to a recent all-pairs dataset of anti-malarials, tested against Plasmodium falciparum, and a preliminary analysis is given as an example, illustrating the disproportionate synergism of histone deacetylase inhibitors previously described in literature, as well as suggesting new hypotheses for future investigation. Synergy Maps improve the state of the art in compound combination visualization, by simultaneously representing individual compound properties and their interactions. The web-based tool allows straightforward exploration of combination data, and easier identification of correlations between compound properties and interactions.

  13. A simple method for combining genetic mapping data from multiple crosses and experimental designs.

    Directory of Open Access Journals (Sweden)

    Jeremy L Peirce

    Full Text Available BACKGROUND: Over the past decade many linkage studies have defined chromosomal intervals containing polymorphisms that modulate a variety of traits. Many phenotypes are now associated with enough mapping data that meta-analysis could help refine locations of known QTLs and detect many novel QTLs. METHODOLOGY/PRINCIPAL FINDINGS: We describe a simple approach to combining QTL mapping results for multiple studies and demonstrate its utility using two hippocampus weight loci. Using data taken from two populations, a recombinant inbred strain set and an advanced intercross population we demonstrate considerable improvements in significance and resolution for both loci. 1-LOD support intervals were improved 51% for Hipp1a and 37% for Hipp9a. We first generate locus-wise permuted P-values for association with the phenotype from multiple maps, which can be done using a permutation method appropriate to each population. These results are then assigned to defined physical positions by interpolation between markers with known physical and genetic positions. We then use Fisher's combination test to combine position-by-position probabilities among experiments. Finally, we calculate genome-wide combined P-values by generating locus-specific P-values for each permuted map for each experiment. These permuted maps are then sampled with replacement and combined. The distribution of best locus-specific P-values for each combined map is the null distribution of genome-wide adjusted P-values. CONCLUSIONS/SIGNIFICANCE: Our approach is applicable to a wide variety of segregating and non-segregating mapping populations, facilitates rapid refinement of physical QTL position, is complementary to other QTL fine mapping methods, and provides an appropriate genome-wide criterion of significance for combined mapping results.

  14. Geostatistical analysis of disease data: accounting for spatial support and population density in the isopleth mapping of cancer mortality risk using area-to-point Poisson kriging

    Directory of Open Access Journals (Sweden)

    Goovaerts Pierre

    2006-11-01

    Full Text Available Abstract Background Geostatistical techniques that account for spatially varying population sizes and spatial patterns in the filtering of choropleth maps of cancer mortality were recently developed. Their implementation was facilitated by the initial assumption that all geographical units are the same size and shape, which allowed the use of geographic centroids in semivariogram estimation and kriging. Another implicit assumption was that the population at risk is uniformly distributed within each unit. This paper presents a generalization of Poisson kriging whereby the size and shape of administrative units, as well as the population density, is incorporated into the filtering of noisy mortality rates and the creation of isopleth risk maps. An innovative procedure to infer the point-support semivariogram of the risk from aggregated rates (i.e. areal data is also proposed. Results The novel methodology is applied to age-adjusted lung and cervix cancer mortality rates recorded for white females in two contrasted county geographies: 1 state of Indiana that consists of 92 counties of fairly similar size and shape, and 2 four states in the Western US (Arizona, California, Nevada and Utah forming a set of 118 counties that are vastly different geographical units. Area-to-point (ATP Poisson kriging produces risk surfaces that are less smooth than the maps created by a naïve point kriging of empirical Bayesian smoothed rates. The coherence constraint of ATP kriging also ensures that the population-weighted average of risk estimates within each geographical unit equals the areal data for this unit. Simulation studies showed that the new approach yields more accurate predictions and confidence intervals than point kriging of areal data where all counties are simply collapsed into their respective polygon centroids. Its benefit over point kriging increases as the county geography becomes more heterogeneous. Conclusion A major limitation of choropleth

  15. Geostatistical analysis of disease data: accounting for spatial support and population density in the isopleth mapping of cancer mortality risk using area-to-point Poisson kriging

    Science.gov (United States)

    Goovaerts, Pierre

    2006-01-01

    Background Geostatistical techniques that account for spatially varying population sizes and spatial patterns in the filtering of choropleth maps of cancer mortality were recently developed. Their implementation was facilitated by the initial assumption that all geographical units are the same size and shape, which allowed the use of geographic centroids in semivariogram estimation and kriging. Another implicit assumption was that the population at risk is uniformly distributed within each unit. This paper presents a generalization of Poisson kriging whereby the size and shape of administrative units, as well as the population density, is incorporated into the filtering of noisy mortality rates and the creation of isopleth risk maps. An innovative procedure to infer the point-support semivariogram of the risk from aggregated rates (i.e. areal data) is also proposed. Results The novel methodology is applied to age-adjusted lung and cervix cancer mortality rates recorded for white females in two contrasted county geographies: 1) state of Indiana that consists of 92 counties of fairly similar size and shape, and 2) four states in the Western US (Arizona, California, Nevada and Utah) forming a set of 118 counties that are vastly different geographical units. Area-to-point (ATP) Poisson kriging produces risk surfaces that are less smooth than the maps created by a naïve point kriging of empirical Bayesian smoothed rates. The coherence constraint of ATP kriging also ensures that the population-weighted average of risk estimates within each geographical unit equals the areal data for this unit. Simulation studies showed that the new approach yields more accurate predictions and confidence intervals than point kriging of areal data where all counties are simply collapsed into their respective polygon centroids. Its benefit over point kriging increases as the county geography becomes more heterogeneous. Conclusion A major limitation of choropleth maps is the common biased

  16. Natural-focal diseases: mapping experience in Russia.

    Science.gov (United States)

    Malkhazova, Svetlana M; Mironova, Varvara A; Kotova, Tatiana V; Shartova, Natalia V; Orlov, Dmitry S

    2014-06-14

    Natural-focal diseases constitute a serious hazard for human health. Agents and vectors of such diseases belong to natural landscapes. The aim of this study is to identify the diversity and geography of natural-focal diseases in Russia and to develop cartographic approaches for their mapping, including mathematical-cartographical modeling. Russian medico-geographical mapping of natural-focal diseases is highly developed regionally and locally but extremely limited at the national level. To solve this problem, a scientific team of the Faculty of Geography at Lomonosov Moscow State University has developed and implemented a project of a medico-geographical Atlas of Russia "Natural-Focal Diseases". The mapping is based on medical statistics data. The Atlas contains a series of maps on disease incidence, long-term dynamics of disease morbidity, etc. In addition, other materials available to the authors were used: mapping of the natural environment, field data, archival materials, analyzed satellite images, etc. The maps are processed using ArcGIS (ESRI) software application. Different methods of rendering of mapped phenomena are used (geographical ranges, diagrams, choropleth maps etc.). A series of analytical, integrated, and synthetic maps shows disease incidence in the population at both the national and regional levels for the last 15 years. Maps of the mean annual morbidity of certain infections and maps of morbidity dynamics and nosological profiles allow for a detailed analysis of the situation for each of 83 administrative units of the Russian Federation. The degree of epidemic hazard in Russia by natural-focal diseases is reflected in a synthetic medico-geographical map that shows the degree of epidemic risks due to such diseases in Russia and allows one to estimate the risk of disease manifestation in a given region. This is the first attempt at aggregation and public presentation of diverse and multifaceted information about natural-focal diseases in Russia

  17. A proposal for combining mapping, localization and target recognition

    Science.gov (United States)

    Grönwall, Christina; Hendeby, Gustaf; Sinivaara, Kristian

    2015-10-01

    Simultaneous localization and mapping (SLAM) is a well-known positioning approach in GPS-denied environments such as urban canyons and inside buildings. Autonomous/aided target detection and recognition (ATR) is commonly used in military application to detect threats and targets in outdoor environments. This papers present approaches to combine SLAM with ATR in ways that compensate for the drawbacks in each method. The methods use physical objects that are recognizable by ATR as unambiguous features in SLAM, while SLAM provides the ATR with better position estimates. Landmarks in the form of 3D point features based on normal aligned radial features (NARF) are used in conjunction with identified objects and 3D object models that replace landmarks when possible. This leads to a more compact map representation with fewer landmarks, which partly compensates for the introduced cost of the ATR. We analyze three approaches to combine SLAM and 3D-data; point-point matching ignoring NARF features, point-point matching using the set of points that are selected by NARF feature analysis, and matching of NARF features using nearest neighbor analysis. The first two approaches are is similar to the common iterative closest point (ICP). We propose an algorithm that combines EKF-SLAM and ATR based on rectangle estimation. The intended application is to improve the positioning of a first responder moving through an indoor environment, where the map offers localization and simultaneously helps locate people, furniture and potentially dangerous objects such as gas canisters.

  18. The theory-based influence of map features on risk beliefs: self-reports of what is seen and understood for maps depicting an environmental health hazard.

    Science.gov (United States)

    Severtson, Dolores J; Vatovec, Christine

    2012-08-01

    Theory-based research is needed to understand how maps of environmental health risk information influence risk beliefs and protective behavior. Using theoretical concepts from multiple fields of study including visual cognition, semiotics, health behavior, and learning and memory supports a comprehensive assessment of this influence. The authors report results from 13 cognitive interviews that provide theory-based insights into how visual features influenced what participants saw and the meaning of what they saw as they viewed 3 formats of water test results for private wells (choropleth map, dot map, and a table). The unit of perception, color, proximity to hazards, geographic distribution, and visual salience had substantial influences on what participants saw and their resulting risk beliefs. These influences are explained by theoretical factors that shape what is seen, properties of features that shape cognition (preattentive, symbolic, visual salience), information processing (top-down and bottom-up), and the strength of concrete compared with abstract information. Personal relevance guided top-down attention to proximal and larger hazards that shaped stronger risk beliefs. Meaning was more local for small perceptual units and global for large units. Three aspects of color were important: preattentive "incremental risk" meaning of sequential shading, symbolic safety meaning of stoplight colors, and visual salience that drew attention. The lack of imagery, geographic information, and color diminished interest in table information. Numeracy and prior beliefs influenced comprehension for some participants. Results guided the creation of an integrated conceptual framework for application to future studies. Ethics should guide the selection of map features that support appropriate communication goals.

  19. MAPS OF THE MAGELLANIC CLOUDS FROM COMBINED SOUTH POLE TELESCOPE AND PLANCK DATA

    Energy Technology Data Exchange (ETDEWEB)

    Crawford, T. M.; Benson, B. A.; Bleem, L. E.; Carlstrom, J. E.; Chang, C. L.; Crites, A. T.; Hou, Z.; Keisler, R. [Kavli Institute for Cosmological Physics, University of Chicago, Chicago, IL 60637 (United States); Chown, R.; Holder, G. P.; Haan, T. de; Dobbs, M. A. [Department of Physics, McGill University, Montreal, Quebec H3A 2T8 (Canada); Aird, K. A.; Hrubes, J. D. [University of Chicago, Chicago, IL 60637 (United States); Cho, H-M. [SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA 94025 (United States); George, E. M.; Harrington, N. L.; Holzapfel, W. L. [Department of Physics, University of California, Berkeley, CA 94720 (United States); Halverson, N. W. [Department of Astrophysical and Planetary Sciences and Department of Physics, University of Colorado, Boulder, CO 80309 (United States); Knox, L., E-mail: tcrawfor@kicp.uchicago.edu [Department of Physics, University of California, Davis, CA 95616 (United States); and others

    2016-12-01

    We present maps of the Large and Small Magellanic Clouds from combined South Pole Telescope (SPT) and Planck data. The Planck satellite observes in nine bands, while the SPT data used in this work were taken with the three-band SPT-SZ camera, The SPT-SZ bands correspond closely to three of the nine Planck bands, namely those centered at 1.4, 2.1, and 3.0 mm. The angular resolution of the Planck data ranges from 5 to 10 arcmin, while the SPT resolution ranges from 1.0 to 1.7 arcmin. The combined maps take advantage of the high resolution of the SPT data and the long-timescale stability of the space-based Planck observations to deliver robust brightness measurements on scales from the size of the maps down to ∼1 arcmin. In each band, we first calibrate and color-correct the SPT data to match the Planck data, then we use noise estimates from each instrument and knowledge of each instrument’s beam to make the inverse-variance-weighted combination of the two instruments’ data as a function of angular scale. We create maps assuming a range of underlying emission spectra and at a range of final resolutions. We perform several consistency tests on the combined maps and estimate the expected noise in measurements of features in them. We compare maps from this work to those from the Herschel HERITAGE survey, finding general consistency between the data sets. All data products described in this paper are available for download from the NASA Legacy Archive for Microwave Background Data Analysis server.

  20. Combining land use data acquired from Landsat with soil map data

    Science.gov (United States)

    Westin, F. C.; Brandner, T. M.

    1981-01-01

    A method currently used to derive agrophysical units (APUs), i.e., geographical areas having definable/comparable agronomic and physical parameters which reflect a range in agricultural use and management, is discussed with reference to results obtained for South Dakota and an area in China. The method consists of combining agricultural land use data acquired from Landsat with soil map data. The resulting map units are soil associations characterized by cropland use intensity, and they can be used to identify major cropland areas and to develop a rating reflecting the relative potential of the soils in the delineated area for crop production, as well as to update small-scale soil maps.

  1. The Implementation of Physics Problem Solving Strategy Combined with Concept Map in General Physics Course

    Science.gov (United States)

    Hidayati, H.; Ramli, R.

    2018-04-01

    This paper aims to provide a description of the implementation of Physic Problem Solving strategy combined with concept maps in General Physics learning at Department of Physics, Universitas Negeri Padang. Action research has been conducted in two cycles where each end of the cycle is reflected and improved for the next cycle. Implementation of Physics Problem Solving strategy combined with concept map can increase student activity in solving general physics problem with an average increase of 15% and can improve student learning outcomes from 42,7 in the cycle I become 62,7 in cycle II in general physics at the Universitas Negeri Padang. In the future, the implementation of Physic Problem Solving strategy combined with concept maps will need to be considered in Physics courses.

  2. ComVisMD - compact visualization of multidimensional data: experimenting with cricket players data

    Science.gov (United States)

    Dandin, Shridhar B.; Ducassé, Mireille

    2018-03-01

    Database information is multidimensional and often displayed in tabular format (row/column display). Presented in aggregated form, multidimensional data can be used to analyze the records or objects. Online Analytical database Processing (OLAP) proposes mechanisms to display multidimensional data in aggregated forms. A choropleth map is a thematic map in which areas are colored in proportion to the measurement of a statistical variable being displayed, such as population density. They are used mostly for compact graphical representation of geographical information. We propose a system, ComVisMD inspired by choropleth map and the OLAP cube to visualize multidimensional data in a compact way. ComVisMD displays multidimensional data like OLAP Cube, where we are mapping an attribute a (first dimension, e.g. year started playing cricket) in vertical direction, object coloring based on b (second dimension, e.g. batting average), mapping varying-size circles based on attribute c (third dimension, e.g. highest score), mapping numbers based on attribute d (fourth dimension, e.g. matches played). We illustrate our approach on cricket players data, namely on two tables Country and Player. They have a large number of rows and columns: 246 rows and 17 columns for players of one country. ComVisMD’s visualization reduces the size of the tabular display by a factor of about 4, allowing users to grasp more information at a time than the bare table display.

  3. Magrit: a new thematic cartography tool

    Science.gov (United States)

    Viry, Matthieu; Giraud, Timothée; Lambert, Nicolas

    2018-05-01

    The article provides an overview of the features of the Magrit web application: a free online thematic mapping tool, presenting a strong pedagogical dimension and making possible to mobilize all the elements necessary for the realization of a thematic map. In this tool, several simple modes of representation are proposed such as proportional maps or choropleth maps. Other, more complex modes are also available such as smoothed maps and cartograms. Each map can be finalized thanks to layout and customization features (projection, scale, orientation, toponyms, etc.) and exported in vector format. Magrit is therefore a complete, light and versatile tool particularly adapted to cartography teaching at the university.

  4. Combined linkage and association mapping of flowering time in Sunflower (Helianthus annuus L.).

    Science.gov (United States)

    Cadic, Elena; Coque, Marie; Vear, Felicity; Grezes-Besset, Bruno; Pauquet, Jerôme; Piquemal, Joël; Lippi, Yannick; Blanchard, Philippe; Romestant, Michel; Pouilly, Nicolas; Rengel, David; Gouzy, Jerôme; Langlade, Nicolas; Mangin, Brigitte; Vincourt, Patrick

    2013-05-01

    Association mapping and linkage mapping were used to identify quantitative trait loci (QTL) and/or causative mutations involved in the control of flowering time in cultivated sunflower Helianthus annuus. A panel of 384 inbred lines was phenotyped through testcrosses with two tester inbred lines across 15 location × year combinations. A recombinant inbred line (RIL) population comprising 273 lines was phenotyped both per se and through testcrosses with one or two testers in 16 location × year combinations. In the association mapping approach, kinship estimation using 5,923 single nucleotide polymorphisms was found to be the best covariate to correct for effects of panel structure. Linkage disequilibrium decay ranged from 0.08 to 0.26 cM for a threshold of 0.20, after correcting for structure effects, depending on the linkage group (LG) and the ancestry of inbred lines. A possible hitchhiking effect is hypothesized for LG10 and LG08. A total of 11 regions across 10 LGs were found to be associated with flowering time, and QTLs were mapped on 11 LGs in the RIL population. Whereas eight regions were demonstrated to be common between the two approaches, the linkage disequilibrium approach did not detect a documented QTL that was confirmed using the linkage mapping approach.

  5. Comparison of lithological mapping results from airborne hyperspectral VNIR-SWIR, LWIR and combined data

    Science.gov (United States)

    Feng, Jilu; Rogge, Derek; Rivard, Benoit

    2018-02-01

    This study investigates using the Airborne Hyperspectral Imaging Systems (AISA) visible and short-wave infrared (SWIR) and Spatially Enhanced Broadband Array Spectrograph System (SEBASS) longwave infrared (LWIR) (2 and 4 m spatial resolution, respectively) imagery independently and in combination to produce detailed lithologic maps in a subarctic region (Cape Smith Belt, Nunavik, Canada) where regionally metamorphosed lower greenschist mafic, ultramafic and sedimentary rocks are exposed in the presence of lichen coatings. We make use of continuous wavelet analysis (CWA) to improve the radiometric quality of the imagery through the minimization of random noise and the enhancement of spectral features, the minimization of residual errors in the ISAC radiometric correction and target temperature estimation in the case of the LWIR data, the minimization of line to line residual calibration effects that lead to inconsistencies in data mosaics, and the reduction in variability of the spectral continuum introduced by variable illumination and topography. The use of CWA also provides a platform to directly combine the wavelet scale spectral profiles of the SWIR and LWIR after applying a scalar correction factor to the LWIR such that the dynamic range of two data sets have equal weight. This is possible using CWA as the datasets are normalized to a zero mean allowing spectra from different spectral regions to be adjoined. Lithologic maps are generated using an iterative spectral unmixing approach with image spectral endmembers extracted from the SWIR and LWIR imagery based on locations defined from previous work of the study area and field mapping information. Unmixing results of the independent SWIR and LWIR data, and the combined data show clear benefits to using the CWA combined imagery. The analysis showed SWIR and LWIR imagery highlight similar regions and spatial distributions for the three ultramafic units (dunite, peridotite, pyroxenite). However, significant

  6. A 2500 deg2 CMB Lensing Map from Combined South Pole Telescope and Planck Data

    International Nuclear Information System (INIS)

    Omori, Y.; Chown, R.; Simard, G.; Story, K. T.; University of Chicago, IL

    2017-01-01

    Here, we present a cosmic microwave background (CMB) lensing map produced from a linear combination of South Pole Telescope (SPT) and Planck temperature data. The 150 GHz temperature data from the 2500 deg 2 SPT-SZ survey is combined with the Planck 143 GHz data in harmonic space to obtain a temperature map that has a broader ℓ coverage and less noise than either individual map. Using a quadratic estimator technique on this combined temperature map, we produce a map of the gravitational lensing potential projected along the line of sight. We measure the auto-spectrum of the lensing potential C L ϕϕ , and compare it to the theoretical prediction for a ΛCDM cosmology consistent with the Planck 2015 data set, finding a best-fit amplitude of 0.95 −0.06 +0.06 (stat.) −0.01 +0.01 (sys.). The null hypothesis of no lensing is rejected at a significance of 24σ. One important use of such a lensing potential map is in cross-correlations with other dark matter tracers. We demonstrate this cross-correlation in practice by calculating the cross-spectrum, C L ϕG , between the SPT+Planck lensing map and Wide-field Infrared Survey Explorer (WISE) galaxies. We fit C L ϕG to a power law of the form p L =a(L/L 0 ) −b with a, L 0, and b fixed, and find η ϕG =C L ϕG /p L =0.94 −0.04 +0.04 , which is marginally lower, but in good agreement with η ϕG =1.00 −0.01 +0.02 , the best-fit amplitude for the cross-correlation of Planck-2015 CMB lensing and WISE galaxies over ~67% of the sky. Finally, the lensing potential map presented here will be used for cross-correlation studies with the Dark Energy Survey, whose footprint nearly completely covers the SPT 2500 deg 2 field.

  7. Searching for primordial non-Gaussianity in Planck CMB maps using a combined estimator

    Energy Technology Data Exchange (ETDEWEB)

    Novaes, C.P.; Wuensche, C.A. [Divisão de Astrofísica, Instituto Nacional de Pesquisas Espaciais, Av. dos Astronautas 1758, São José dos Campos 12227-010, SP (Brazil); Bernui, A. [Observatório Nacional, Rua General José Cristino 77, São Cristóvão, 20921-400, Rio de Janeiro, RJ (Brazil); Ferreira, I.S., E-mail: camilapnovaes@gmail.com, E-mail: bernui@on.br, E-mail: ivan@fis.unb.br, E-mail: ca.wuensche@inpe.br [Instituto de Física, Universidade de Brasília, Campus Universitário Darcy Ribeiro, Asa Norte, 70919-970, Brasília, DF (Brazil)

    2014-01-01

    The extensive search for deviations from Gaussianity in cosmic microwave background radiation (CMB) data is very important due to the information about the very early moments of the universe encoded there. Recent analyses from Planck CMB data do not exclude the presence of non-Gaussianity of small amplitude, although they are consistent with the Gaussian hypothesis. The use of different techniques is essential to provide information about types and amplitudes of non-Gaussianities in the CMB data. In particular, we find interesting to construct an estimator based upon the combination of two powerful statistical tools that appears to be sensitive enough to detect tiny deviations from Gaussianity in CMB maps. This estimator combines the Minkowski functionals with a Neural Network, maximizing a tool widely used to study non-Gaussian signals with a reinforcement of another tool designed to identify patterns in a data set. We test our estimator by analyzing simulated CMB maps contaminated with different amounts of local primordial non-Gaussianity quantified by the dimensionless parameter f{sub  NL}. We apply it to these sets of CMB maps and find ∼> 98% of chance of positive detection, even for small intensity local non-Gaussianity like f{sub  NL} = 38±18, the current limit from Planck data for large angular scales. Additionally, we test the suitability to distinguish between primary and secondary non-Gaussianities: first we train the Neural Network with two sets, one of nearly Gaussian CMB maps (|f{sub  NL}| ≤ 10) but contaminated with realistic inhomogeneous Planck noise (i.e., secondary non-Gaussianity) and the other of non-Gaussian CMB maps, that is, maps endowed with weak primordial non-Gaussianity (28 ≤ f{sub  NL} ≤ 48); after that we test an ensemble composed of CMB maps either with one of these non-Gaussian contaminations, and find out that our method successfully classifies ∼ 95% of the tested maps as being CMB maps containing primordial or

  8. Combining Semantic and Lexical Methods for Mapping MedDRA to VCM Icons.

    Science.gov (United States)

    Lamy, Jean-Baptiste; Tsopra, Rosy

    2018-01-01

    VCM (Visualization of Concept in Medicine) is an iconic language that represents medical concepts, such as disorders, by icons. VCM has a formal semantics described by an ontology. The icons can be used in medical software for providing a visual summary or enriching texts. However, the use of VCM icons in user interfaces requires to map standard medical terminologies to VCM. Here, we present a method combining semantic and lexical approaches for mapping MedDRA to VCM. The method takes advantage of the hierarchical relations in MedDRA. It also analyzes the groups of lemmas in the term's labels, and relies on a manual mapping of these groups to the concepts in the VCM ontology. We evaluate the method on 50 terms. Finally, we discuss the method and suggest perspectives.

  9. Passive language mapping combining real-time oscillation analysis with cortico-cortical evoked potentials for awake craniotomy.

    Science.gov (United States)

    Tamura, Yukie; Ogawa, Hiroshi; Kapeller, Christoph; Prueckl, Robert; Takeuchi, Fumiya; Anei, Ryogo; Ritaccio, Anthony; Guger, Christoph; Kamada, Kyousuke

    2016-12-01

    OBJECTIVE Electrocortical stimulation (ECS) is the gold standard for functional brain mapping; however, precise functional mapping is still difficult in patients with language deficits. High gamma activity (HGA) between 80 and 140 Hz on electrocorticography is assumed to reflect localized cortical processing, whereas the cortico-cortical evoked potential (CCEP) can reflect bidirectional responses evoked by monophasic pulse stimuli to the language cortices when there is no patient cooperation. The authors propose the use of "passive" mapping by combining HGA mapping and CCEP recording without active tasks during conscious resections of brain tumors. METHODS Five patients, each with an intraaxial tumor in their dominant hemisphere, underwent conscious resection of their lesion with passive mapping. The authors performed functional localization for the receptive language area, using real-time HGA mapping, by listening passively to linguistic sounds. Furthermore, single electrical pulses were delivered to the identified receptive temporal language area to detect CCEPs in the frontal lobe. All mapping results were validated by ECS, and the sensitivity and specificity were evaluated. RESULTS Linguistic HGA mapping quickly identified the language area in the temporal lobe. Electrical stimulation by linguistic HGA mapping to the identified temporal receptive language area evoked CCEPs on the frontal lobe. The combination of linguistic HGA and frontal CCEPs needed no patient cooperation or effort. In this small case series, the sensitivity and specificity were 93.8% and 89%, respectively. CONCLUSIONS The described technique allows for simple and quick functional brain mapping with higher sensitivity and specificity than ECS mapping. The authors believe that this could improve the reliability of functional brain mapping and facilitate rational and objective operations. Passive mapping also sheds light on the underlying physiological mechanisms of language in the human brain.

  10. High resolution population maps for low income nations: combining land cover and census in East Africa.

    Directory of Open Access Journals (Sweden)

    Andrew J Tatem

    2007-12-01

    Full Text Available Between 2005 and 2050, the human population is forecast to grow by 2.7 billion, with the vast majority of this growth occurring in low income countries. This growth is likely to have significant social, economic and environmental impacts, and make the achievement of international development goals more difficult. The measurement, monitoring and potential mitigation of these impacts require high resolution, contemporary data on human population distributions. In low income countries, however, where the changes will be concentrated, the least information on the distribution of population exists. In this paper we investigate whether satellite imagery in combination with land cover information and census data can be used to create inexpensive, high resolution and easily-updatable settlement and population distribution maps over large areas.We examine various approaches for the production of maps of the East African region (Kenya, Uganda, Burundi, Rwanda and Tanzania and where fine resolution census data exists, test the accuracies of map production approaches and existing population distribution products. The results show that combining high resolution census, settlement and land cover information is important in producing accurate population distribution maps.We find that this semi-automated population distribution mapping at unprecedented spatial resolution produces more accurate results than existing products and can be undertaken for as little as $0.01 per km(2. The resulting population maps are a product of the Malaria Atlas Project (MAP: http://www.map.ox.ac.uk and are freely available.

  11. High Resolution Population Maps for Low Income Nations: Combining Land Cover and Census in East Africa

    Science.gov (United States)

    Tatem, Andrew J.; Noor, Abdisalan M.; von Hagen, Craig; Di Gregorio, Antonio; Hay, Simon I.

    2007-01-01

    Background Between 2005 and 2050, the human population is forecast to grow by 2.7 billion, with the vast majority of this growth occurring in low income countries. This growth is likely to have significant social, economic and environmental impacts, and make the achievement of international development goals more difficult. The measurement, monitoring and potential mitigation of these impacts require high resolution, contemporary data on human population distributions. In low income countries, however, where the changes will be concentrated, the least information on the distribution of population exists. In this paper we investigate whether satellite imagery in combination with land cover information and census data can be used to create inexpensive, high resolution and easily-updatable settlement and population distribution maps over large areas. Methodology/Principal Findings We examine various approaches for the production of maps of the East African region (Kenya, Uganda, Burundi, Rwanda and Tanzania) and where fine resolution census data exists, test the accuracies of map production approaches and existing population distribution products. The results show that combining high resolution census, settlement and land cover information is important in producing accurate population distribution maps. Conclusions We find that this semi-automated population distribution mapping at unprecedented spatial resolution produces more accurate results than existing products and can be undertaken for as little as $0.01 per km2. The resulting population maps are a product of the Malaria Atlas Project (MAP: http://www.map.ox.ac.uk) and are freely available. PMID:18074022

  12. Combined chemical shift changes and amino acid specific chemical shift mapping of protein-protein interactions

    Energy Technology Data Exchange (ETDEWEB)

    Schumann, Frank H.; Riepl, Hubert [University of Regensburg, Institute of Biophysics and Physical Biochemistry (Germany); Maurer, Till [Boehringer Ingelheim Pharma GmbH and Co. KG, Analytical Sciences Department (Germany); Gronwald, Wolfram [University of Regensburg, Institute of Biophysics and Physical Biochemistry (Germany); Neidig, Klaus-Peter [Bruker BioSpin GmbH, Software Department (Germany); Kalbitzer, Hans Robert [University of Regensburg, Institute of Biophysics and Physical Biochemistry (Germany)], E-mail: hans-robert.kalbitzer@biologie.uni-regensburg.de

    2007-12-15

    Protein-protein interactions are often studied by chemical shift mapping using solution NMR spectroscopy. When heteronuclear data are available the interaction interface is usually predicted by combining the chemical shift changes of different nuclei to a single quantity, the combined chemical shift perturbation {delta}{delta}{sub comb}. In this paper different procedures (published and non-published) to calculate {delta}{delta}{sub comb} are examined that include a variety of different functional forms and weighting factors for each nucleus. The predictive power of all shift mapping methods depends on the magnitude of the overlap of the chemical shift distributions of interacting and non-interacting residues and the cut-off criterion used. In general, the quality of the prediction on the basis of chemical shift changes alone is rather unsatisfactory but the combination of chemical shift changes on the basis of the Hamming or the Euclidian distance can improve the result. The corrected standard deviation to zero of the combined chemical shift changes can provide a reasonable cut-off criterion. As we show combined chemical shifts can also be applied for a more reliable quantitative evaluation of titration data.

  13. Determination of contact maps in proteins: A combination of structural and chemical approaches

    Energy Technology Data Exchange (ETDEWEB)

    Wołek, Karol; Cieplak, Marek, E-mail: mc@ifpan.edu.pl [Institute of Physics, Polish Academy of Science, Al. Lotników 32/46, 02-668 Warsaw (Poland); Gómez-Sicilia, Àngel [Instituto Cajal, Consejo Superior de Investigaciones Cientificas (CSIC), Av. Doctor Arce, 37, 28002 Madrid (Spain); Instituto Madrileño de Estudios Avanzados en Nanociencia (IMDEA-Nanociencia), C/Faraday 9, 28049 Cantoblanco (Madrid) (Spain)

    2015-12-28

    Contact map selection is a crucial step in structure-based molecular dynamics modelling of proteins. The map can be determined in many different ways. We focus on the methods in which residues are represented as clusters of effective spheres. One contact map, denoted as overlap (OV), is based on the overlap of such spheres. Another contact map, named Contacts of Structural Units (CSU), involves the geometry in a different way and, in addition, brings chemical considerations into account. We develop a variant of the CSU approach in which we also incorporate Coulombic effects such as formation of the ionic bridges and destabilization of possible links through repulsion. In this way, the most essential and well defined contacts are identified. The resulting residue-residue contact map, dubbed repulsive CSU (rCSU), is more sound in its physico-chemical justification than CSU. It also provides a clear prescription for validity of an inter-residual contact: the number of attractive atomic contacts should be larger than the number of repulsive ones — a feature that is not present in CSU. However, both of these maps do not correlate well with the experimental data on protein stretching. Thus, we propose to use rCSU together with the OV map. We find that the combined map, denoted as OV+rCSU, performs better than OV. In most situations, OV and OV+rCSU yield comparable folding properties but for some proteins rCSU provides contacts which improve folding in a substantial way. We discuss the likely residue-specificity of the rCSU contacts. Finally, we make comparisons to the recently proposed shadow contact map, which is derived from different principles.

  14. Teamwork: improved eQTL mapping using combinations of machine learning methods.

    Directory of Open Access Journals (Sweden)

    Marit Ackermann

    Full Text Available Expression quantitative trait loci (eQTL mapping is a widely used technique to uncover regulatory relationships between genes. A range of methodologies have been developed to map links between expression traits and genotypes. The DREAM (Dialogue on Reverse Engineering Assessments and Methods initiative is a community project to objectively assess the relative performance of different computational approaches for solving specific systems biology problems. The goal of one of the DREAM5 challenges was to reverse-engineer genetic interaction networks from synthetic genetic variation and gene expression data, which simulates the problem of eQTL mapping. In this framework, we proposed an approach whose originality resides in the use of a combination of existing machine learning algorithms (committee. Although it was not the best performer, this method was by far the most precise on average. After the competition, we continued in this direction by evaluating other committees using the DREAM5 data and developed a method that relies on Random Forests and LASSO. It achieved a much higher average precision than the DREAM best performer at the cost of slightly lower average sensitivity.

  15. Combined noninvasive language mapping by navigated transcranial magnetic stimulation and functional MRI and its comparison with direct cortical stimulation.

    Science.gov (United States)

    Ille, Sebastian; Sollmann, Nico; Hauck, Theresa; Maurer, Stefanie; Tanigawa, Noriko; Obermueller, Thomas; Negwer, Chiara; Droese, Doris; Zimmer, Claus; Meyer, Bernhard; Ringel, Florian; Krieg, Sandro M

    2015-07-01

    Repetitive navigated transcranial magnetic stimulation (rTMS) is now increasingly used for preoperative language mapping in patients with lesions in language-related areas of the brain. Yet its correlation with intraoperative direct cortical stimulation (DCS) has to be improved. To increase rTMS's specificity and positive predictive value, the authors aim to provide thresholds for rTMS's positive language areas. Moreover, they propose a protocol for combining rTMS with functional MRI (fMRI) to combine the strength of both methods. The authors performed multimodal language mapping in 35 patients with left-sided perisylvian lesions by using rTMS, fMRI, and DCS. The rTMS mappings were conducted with a picture-to-trigger interval (PTI, time between stimulus presentation and stimulation onset) of either 0 or 300 msec. The error rates (ERs; that is, the number of errors per number of stimulations) were calculated for each region of the cortical parcellation system (CPS). Subsequently, the rTMS mappings were analyzed through different error rate thresholds (ERT; that is, the ER at which a CPS region was defined as language positive in terms of rTMS), and the 2-out-of-3 rule (a stimulation site was defined as language positive in terms of rTMS if at least 2 out of 3 stimulations caused an error). As a second step, the authors combined the results of fMRI and rTMS in a predefined protocol of combined noninvasive mapping. To validate this noninvasive protocol, they correlated its results to DCS during awake surgery. The analysis by different rTMS ERTs obtained the highest correlation regarding sensitivity and a low rate of false positives for the ERTs of 15%, 20%, 25%, and the 2-out-of-3 rule. However, when comparing the combined fMRI and rTMS results with DCS, the authors observed an overall specificity of 83%, a positive predictive value of 51%, a sensitivity of 98%, and a negative predictive value of 95%. In comparison with fMRI, rTMS is a more sensitive but less specific

  16. Maps of the Southern Millimeter-wave Sky from Combined 2500 deg$^2$ SPT-SZ and Planck Temperature Data

    Energy Technology Data Exchange (ETDEWEB)

    Chown, R.; et al.

    2018-03-28

    We present three maps of the millimeter-wave sky created by combining data from the South Pole Telescope (SPT) and the Planck satellite. We use data from the SPT-SZ survey, a survey of 2540 deg$^2$ of the the sky with arcminute resolution in three bands centered at 95, 150, and 220 GHz, and the full-mission Planck temperature data in the 100, 143, and 217 GHz bands. A linear combination of the SPT-SZ and Planck data is computed in spherical harmonic space, with weights derived from the noise of both instruments. This weighting scheme results in Planck data providing most of the large-angular-scale information in the combined maps, with the smaller-scale information coming from SPT-SZ data. A number of tests have been done on the maps. We find their angular power spectra to agree very well with theoretically predicted spectra and previously published results.

  17. Fine mapping of multiple QTL using combined linkage and linkage disequilibrium mapping – A comparison of single QTL and multi QTL methods

    Directory of Open Access Journals (Sweden)

    Meuwissen Theo HE

    2007-04-01

    Full Text Available Abstract Two previously described QTL mapping methods, which combine linkage analysis (LA and linkage disequilibrium analysis (LD, were compared for their ability to detect and map multiple QTL. The methods were tested on five different simulated data sets in which the exact QTL positions were known. Every simulated data set contained two QTL, but the distances between these QTL were varied from 15 to 150 cM. The results show that the single QTL mapping method (LDLA gave good results as long as the distance between the QTL was large (> 90 cM. When the distance between the QTL was reduced, the single QTL method had problems positioning the two QTL and tended to position only one QTL, i.e. a "ghost" QTL, in between the two real QTL positions. The multi QTL mapping method (MP-LDLA gave good results for all evaluated distances between the QTL. For the large distances between the QTL (> 90 cM the single QTL method more often positioned the QTL in the correct marker bracket, but considering the broader likelihood peaks of the single point method it could be argued that the multi QTL method was more precise. Since the distances were reduced the multi QTL method was clearly more accurate than the single QTL method. The two methods combine well, and together provide a good tool to position single or multiple QTL in practical situations, where the number of QTL and their positions are unknown.

  18. Assessment of Above-Ground Biomass of Borneo Forests through a New Data-Fusion Approach Combining Two Pan-Tropical Biomass Maps

    Directory of Open Access Journals (Sweden)

    Andreas Langner

    2015-08-01

    Full Text Available This study investigates how two existing pan-tropical above-ground biomass (AGB maps (Saatchi 2011, Baccini 2012 can be combined to derive forest ecosystem specific carbon estimates. Several data-fusion models which combine these AGB maps according to their local correlations with independent datasets such as the spectral bands of SPOT VEGETATION imagery are analyzed. Indeed these spectral bands convey information about vegetation type and structure which can be related to biomass values. Our study area is the island of Borneo. The data-fusion models are evaluated against a reference AGB map available for two forest concessions in Sabah. The highest accuracy was achieved by a model which combines the AGB maps according to the mean of the local correlation coefficients calculated over different kernel sizes. Combining the resulting AGB map with a new Borneo land cover map (whose overall accuracy has been estimated at 86.5% leads to average AGB estimates of 279.8 t/ha and 233.1 t/ha for forests and degraded forests respectively. Lowland dipterocarp and mangrove forests have the highest and lowest AGB values (305.8 t/ha and 136.5 t/ha respectively. The AGB of all natural forests amounts to 10.8 Gt mainly stemming from lowland dipterocarp (66.4%, upper dipterocarp (10.9% and peat swamp forests (10.2%. Degraded forests account for another 2.1 Gt of AGB. One main advantage of our approach is that, once the best fitting data-fusion model is selected, no further AGB reference dataset is required for implementing the data-fusion process. Furthermore, the local harmonization of AGB datasets leads to more spatially precise maps. This approach can easily be extended to other areas in Southeast Asia which are dominated by lowland dipterocarp forest, and can be repeated when newer or more accurate AGB maps become available.

  19. Improving Situational Awareness in camera surveillance by combining top-view maps with camera images

    NARCIS (Netherlands)

    Kooi, F.L.; Zeeders, R.

    2009-01-01

    The goal of the experiment described is to improve today's camera surveillance in public spaces. Three designs with the camera images combined on a top-view map were compared to each other and to the current situation in camera surveillance. The goal was to test which design makes spatial

  20. Confirmation and Fine Mapping of a Major QTL for Aflatoxin Resistance in Maize Using a Combination of Linkage and Association Mapping

    Directory of Open Access Journals (Sweden)

    Yu Zhang

    2016-09-01

    Full Text Available Maize grain contamination with aflatoxin from Aspergillus flavus (A. flavus is a serious health hazard to animals and humans. To map the quantitative trait loci (QTLs associated with resistance to A. flavus, we employed a powerful approach that differs from previous methods in one important way: it combines the advantages of the genome-wide association analysis (GWAS and traditional linkage mapping analysis. Linkage mapping was performed using 228 recombinant inbred lines (RILs, and a highly significant QTL that affected aflatoxin accumulation, qAA8, was mapped. This QTL spanned approximately 7 centi-Morgan (cM on chromosome 8. The confidence interval was too large for positional cloning of the causal gene. To refine this QTL, GWAS was performed with 558,629 single nucleotide polymorphisms (SNPs in an association population comprising 437 maize inbred lines. Twenty-five significantly associated SNPs were identified, most of which co-localised with qAA8 and explained 6.7% to 26.8% of the phenotypic variation observed. Based on the rapid linkage disequilibrium (LD and the high density of SNPs in the association population, qAA8 was further localised to a smaller genomic region of approximately 1500 bp. A high-resolution map of the qAA8 region will be useful towards a marker-assisted selection (MAS of A. flavus resistance and a characterisation of the causal gene.

  1. A combination of selected mapping and clipping to increase energy efficiency of OFDM systems

    Science.gov (United States)

    Lee, Byung Moo; Rim, You Seung

    2017-01-01

    We propose an energy efficient combination design for OFDM systems based on selected mapping (SLM) and clipping peak-to-average power ratio (PAPR) reduction techniques, and show the related energy efficiency (EE) performance analysis. The combination of two different PAPR reduction techniques can provide a significant benefit in increasing EE, because it can take advantages of both techniques. For the combination, we choose the clipping and SLM techniques, since the former technique is quite simple and effective, and the latter technique does not cause any signal distortion. We provide the structure and the systematic operating method, and show the various analyzes to derive the EE gain based on the combined technique. Our analysis show that the combined technique increases the EE by 69% compared to no PAPR reduction, and by 19.34% compared to only using SLM technique. PMID:29023591

  2. USGS Topo Base Map from The National Map

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — The USGS Topographic Base Map from The National Map. This tile cached web map service combines the most current data services (Boundaries, Names, Transportation,...

  3. High Resolution Decision Maps for Urban Planning: A Combined Analysis of Urban Flooding and Thermal Stress Potential In Asia and Europe

    Directory of Open Access Journals (Sweden)

    Boogaard Floris

    2017-01-01

    Full Text Available Urban flooding and thermal stress have become key issues for many cities around the world. With the continuing effects of climate change, these two issues will become more acute and will add to the serious problems already experienced in dense urban areas. Therefore, the sectors of public health and disaster management are in the need of tools that can assess the vulnerability to floods and thermal stress. The present paper deals with the combination of innovative tools to address this challenge. Three cities in different climatic regions with various urban contexts have been selected as the pilot areas to demonstrate these tools. These cities are Tainan (Taiwan, Ayutthaya (Thailand and Groningen (Netherlands. For these cities, flood maps and heat stress maps were developed and used for the comparison analysis. The flood maps produced indicate vulnerable low-lying areas, whereas thermal stress maps indicate open, unshaded areas where high Physiological Equivalent Temperature (PET values (thermal comfort can be expected. The work to date indicates the potential of combining two different kinds of maps to identify and analyse the problem areas. These maps could be further improved and used by urban planners and other stakeholders to assess the resilience and well-being of cities. The work presented shows that the combined analysis of such maps also has a strong potential to be used for the analysis of other challenges in urban dense areas such as air and water pollution, immobility and noise disturbance.

  4. A 2500 deg 2 CMB Lensing Map from Combined South Pole Telescope and Planck Data

    Energy Technology Data Exchange (ETDEWEB)

    Omori, Y.; Chown, R.; Simard, G.; Story, K. T.; Aylor, K.; Baxter, E. J.; Benson, B. A.; Bleem, L. E.; Carlstrom, J. E.; Chang, C. L.; Cho, H-M.; Crawford, T. M.; Crites, A. T.; Haan, T. de; Dobbs, M. A.; Everett, W. B.; George, E. M.; Halverson, N. W.; Harrington, N. L.; Holder, G. P.; Hou, Z.; Holzapfel, W. L.; Hrubes, J. D.; Knox, L.; Lee, A. T.; Leitch, E. M.; Luong-Van, D.; Manzotti, A.; Marrone, D. P.; McMahon, J. J.; Meyer, S. S.; Mocanu, L. M.; Mohr, J. J.; Natoli, T.; Padin, S.; Pryke, C.; Reichardt, C. L.; Ruhl, J. E.; Sayre, J. T.; Schaffer, K. K.; Shirokoff, E.; Staniszewski, Z.; Stark, A. A.; Vanderlinde, K.; Vieira, J. D.; Williamson, R.; Zahn, O.

    2017-11-07

    We present a cosmic microwave background (CMB) lensing map produced from a linear combination of South Pole Telescope (SPT) and \\emph{Planck} temperature data. The 150 GHz temperature data from the $2500\\ {\\rm deg}^{2}$ SPT-SZ survey is combined with the \\emph{Planck} 143 GHz data in harmonic space, to obtain a temperature map that has a broader $\\ell$ coverage and less noise than either individual map. Using a quadratic estimator technique on this combined temperature map, we produce a map of the gravitational lensing potential projected along the line of sight. We measure the auto-spectrum of the lensing potential $C_{L}^{\\phi\\phi}$, and compare it to the theoretical prediction for a $\\Lambda$CDM cosmology consistent with the \\emph{Planck} 2015 data set, finding a best-fit amplitude of $0.95_{-0.06}^{+0.06}({\\rm Stat.})\\! _{-0.01}^{+0.01}({\\rm Sys.})$. The null hypothesis of no lensing is rejected at a significance of $24\\,\\sigma$. One important use of such a lensing potential map is in cross-correlations with other dark matter tracers. We demonstrate this cross-correlation in practice by calculating the cross-spectrum, $C_{L}^{\\phi G}$, between the SPT+\\emph{Planck} lensing map and Wide-field Infrared Survey Explorer (\\emph{WISE}) galaxies. We fit $C_{L}^{\\phi G}$ to a power law of the form $p_{L}=a(L/L_{0})^{-b}$ with $a=2.15 \\times 10^{-8}$, $b=1.35$, $L_{0}=490$, and find $\\eta^{\\phi G}=0.94^{+0.04}_{-0.04}$, which is marginally lower, but in good agreement with $\\eta^{\\phi G}=1.00^{+0.02}_{-0.01}$, the best-fit amplitude for the cross-correlation of \\emph{Planck}-2015 CMB lensing and \\emph{WISE} galaxies over $\\sim67\\%$ of the sky. The lensing potential map presented here will be used for cross-correlation studies with the Dark Energy Survey (DES), whose footprint nearly completely covers the SPT $2500\\ {\\rm deg}^2$ field.

  5. An evaluation of sampling and full enumeration strategies for Fisher Jenks classification in big data settings

    Science.gov (United States)

    Rey, Sergio J.; Stephens, Philip A.; Laura, Jason R.

    2017-01-01

    Large data contexts present a number of challenges to optimal choropleth map classifiers. Application of optimal classifiers to a sample of the attribute space is one proposed solution. The properties of alternative sampling-based classification methods are examined through a series of Monte Carlo simulations. The impacts of spatial autocorrelation, number of desired classes, and form of sampling are shown to have significant impacts on the accuracy of map classifications. Tradeoffs between improved speed of the sampling approaches and loss of accuracy are also considered. The results suggest the possibility of guiding the choice of classification scheme as a function of the properties of large data sets.

  6. Standardized mappings--a framework to combine different semantic mappers into a standardized web-API.

    Science.gov (United States)

    Neuhaus, Philipp; Doods, Justin; Dugas, Martin

    2015-01-01

    Automatic coding of medical terms is an important, but highly complicated and laborious task. To compare and evaluate different strategies a framework with a standardized web-interface was created. Two UMLS mapping strategies are compared to demonstrate the interface. The framework is a Java Spring application running on a Tomcat application server. It accepts different parameters and returns results in JSON format. To demonstrate the framework, a list of medical data items was mapped by two different methods: similarity search in a large table of terminology codes versus search in a manually curated repository. These mappings were reviewed by a specialist. The evaluation shows that the framework is flexible (due to standardized interfaces like HTTP and JSON), performant and reliable. Accuracy of automatically assigned codes is limited (up to 40%). Combining different semantic mappers into a standardized Web-API is feasible. This framework can be easily enhanced due to its modular design.

  7. Urban Land Use Mapping by Combining Remote Sensing Imagery and Mobile Phone Positioning Data

    Directory of Open Access Journals (Sweden)

    Yuanxin Jia

    2018-03-01

    Full Text Available Land use is of great importance for urban planning, environmental monitoring, and transportation management. Several methods have been proposed to obtain land use maps of urban areas, and these can be classified into two categories: remote sensing methods and social sensing methods. However, remote sensing and social sensing approaches have specific disadvantages regarding the description of social and physical features, respectively. Therefore, an appropriate fusion strategy is vital for large-area land use mapping. To address this issue, we propose an efficient land use mapping method that combines remote sensing imagery (RSI and mobile phone positioning data (MPPD for large areas. We implemented this method in two steps. First, a support vector machine was adopted to classify the RSI and MPPD. Then, the two classification results were fused using a decision fusion strategy to generate the land use map. The proposed method was applied to a case study of the central area of Beijing. The experimental results show that the proposed method improved classification accuracy compared with that achieved using MPPD alone, validating the efficacy of this new approach for identifying land use. Based on the land use map and MPPD data, activity density in key zones during daytime and nighttime was analyzed to illustrate the volume and variation of people working and living across different regions.

  8. Combining task-evoked and spontaneous activity to improve pre-operative brain mapping with fMRI

    Science.gov (United States)

    Fox, Michael D.; Qian, Tianyi; Madsen, Joseph R.; Wang, Danhong; Li, Meiling; Ge, Manling; Zuo, Huan-cong; Groppe, David M.; Mehta, Ashesh D.; Hong, Bo; Liu, Hesheng

    2016-01-01

    Noninvasive localization of brain function is used to understand and treat neurological disease, exemplified by pre-operative fMRI mapping prior to neurosurgical intervention. The principal approach for generating these maps relies on brain responses evoked by a task and, despite known limitations, has dominated clinical practice for over 20 years. Recently, pre-operative fMRI mapping based on correlations in spontaneous brain activity has been demonstrated, however this approach has its own limitations and has not seen widespread clinical use. Here we show that spontaneous and task-based mapping can be performed together using the same pre-operative fMRI data, provide complimentary information relevant for functional localization, and can be combined to improve identification of eloquent motor cortex. Accuracy, sensitivity, and specificity of our approach are quantified through comparison with electrical cortical stimulation mapping in eight patients with intractable epilepsy. Broad applicability and reproducibility of our approach is demonstrated through prospective replication in an independent dataset of six patients from a different center. In both cohorts and every individual patient, we see a significant improvement in signal to noise and mapping accuracy independent of threshold, quantified using receiver operating characteristic curves. Collectively, our results suggest that modifying the processing of fMRI data to incorporate both task-based and spontaneous activity significantly improves functional localization in pre-operative patients. Because this method requires no additional scan time or modification to conventional pre-operative data acquisition protocols it could have widespread utility. PMID:26408860

  9. Mapping Sub-Antarctic Cushion Plants Using Random Forests to Combine Very High Resolution Satellite Imagery and Terrain Modelling

    Science.gov (United States)

    Bricher, Phillippa K.; Lucieer, Arko; Shaw, Justine; Terauds, Aleks; Bergstrom, Dana M.

    2013-01-01

    Monitoring changes in the distribution and density of plant species often requires accurate and high-resolution baseline maps of those species. Detecting such change at the landscape scale is often problematic, particularly in remote areas. We examine a new technique to improve accuracy and objectivity in mapping vegetation, combining species distribution modelling and satellite image classification on a remote sub-Antarctic island. In this study, we combine spectral data from very high resolution WorldView-2 satellite imagery and terrain variables from a high resolution digital elevation model to improve mapping accuracy, in both pixel- and object-based classifications. Random forest classification was used to explore the effectiveness of these approaches on mapping the distribution of the critically endangered cushion plant Azorella macquariensis Orchard (Apiaceae) on sub-Antarctic Macquarie Island. Both pixel- and object-based classifications of the distribution of Azorella achieved very high overall validation accuracies (91.6–96.3%, κ = 0.849–0.924). Both two-class and three-class classifications were able to accurately and consistently identify the areas where Azorella was absent, indicating that these maps provide a suitable baseline for monitoring expected change in the distribution of the cushion plants. Detecting such change is critical given the threats this species is currently facing under altering environmental conditions. The method presented here has applications to monitoring a range of species, particularly in remote and isolated environments. PMID:23940805

  10. Landslide Susceptibility Mapping Based on Selected Optimal Combination of Landslide Predisposing Factors in a Large Catchment

    Directory of Open Access Journals (Sweden)

    Qianqian Wang

    2015-12-01

    Full Text Available Landslides are usually initiated under complex geological conditions. It is of great significance to find out the optimal combination of predisposing factors and create an accurate landslide susceptibility map based on them. In this paper, the Information Value Model was modified to make the Modified Information Value (MIV Model, and together with GIS (Geographical Information System and AUC (Area Under Receiver Operating Characteristic Curve test, 32 factor combinations were evaluated separately, and factor combination group with members Slope, Lithology, Drainage network, Annual precipitation, Faults, Road and Vegetation was selected as the optimal combination group with an accuracy of 95.0%. Based on this group, a landslide susceptibility zonation map was drawn, where the study area was reclassified into five classes, presenting an accurate description of different levels of landslide susceptibility, with 79.41% and 13.67% of the validating field survey landslides falling in the Very High and High zones, respectively, mainly distributed in the south and southeast of the catchment. It showed that MIV model can tackle the problem of “no data in subclass” well, generate the true information value and show real running trend, which performs well in showing the relationship between predisposing factors and landslide occurrence and can be used for preliminary landslide susceptibility assessment in the study area.

  11. A Ranking Analysis/An Interlinking Approach of New Triangular Fuzzy Cognitive Maps and Combined Effective Time Dependent Matrix

    Science.gov (United States)

    Adiga, Shreemathi; Saraswathi, A.; Praveen Prakash, A.

    2018-04-01

    This paper aims an interlinking approach of new Triangular Fuzzy Cognitive Maps (TrFCM) and Combined Effective Time Dependent (CETD) matrix to find the ranking of the problems of Transgenders. Section one begins with an introduction that briefly describes the scope of Triangular Fuzzy Cognitive Maps (TrFCM) and CETD Matrix. Section two provides the process of causes of problems faced by Transgenders using Fuzzy Triangular Fuzzy Cognitive Maps (TrFCM) method and performs the calculations using the collected data among the Transgender. In Section 3, the reasons for the main causes for the problems of the Transgenders. Section 4 describes the Charles Spearmans coefficients of rank correlation method by interlinking of Triangular Fuzzy Cognitive Maps (TrFCM) Method and CETD Matrix. Section 5 shows the results based on our study.

  12. Combining µXANES and µXRD mapping to analyse the heterogeneity in calcium carbonate granules excreted by the earthworm Lumbricus terrestris

    International Nuclear Information System (INIS)

    Brinza, Loredana; Schofield, Paul F.; Hodson, Mark E.; Weller, Sophie; Ignatyev, Konstantin; Geraki, Kalotina; Quinn, Paul D.; Mosselmans, J. Frederick W.

    2014-01-01

    A new experimental set-up enabling microfocus fluorescence XANES mapping and microfocus XRD mapping on the same sample at beamline I18 at Diamond Light Source is described. To demonstrate this set-up the heterogeneous mineralogy in calcium carbonate granules excreted by the earthworm Lumbricus terrestris has been analysed. Data analysis methods have been developed which enable µXRD and µXANES two-dimensional maps to be compared. The use of fluorescence full spectral micro-X-ray absorption near-edge structure (µXANES) mapping is becoming more widespread in the hard energy regime. This experimental method using the Ca K-edge combined with micro-X-ray diffraction (µXRD) mapping of the same sample has been enabled on beamline I18 at Diamond Light Source. This combined approach has been used to probe both long- and short-range order in calcium carbonate granules produced by the earthworm Lumbricus terrestris. In granules produced by earthworms cultured in a control artificial soil, calcite and vaterite are observed in the granules. However, granules produced by earthworms cultivated in the same artificial soil amended with 500 p.p.m. Mg also contain an aragonite. The two techniques, µXRD and µXANES, probe different sample volumes but there is good agreement in the phase maps produced

  13. Combining µXANES and µXRD mapping to analyse the heterogeneity in calcium carbonate granules excreted by the earthworm Lumbricus terrestris

    Energy Technology Data Exchange (ETDEWEB)

    Brinza, Loredana [Diamond Light Source, Harwell Campus, Didcot, Oxon OX11 0DE (United Kingdom); Schofield, Paul F. [Natural History Museum, Cromwell Road, London SW7 5BD (United Kingdom); Hodson, Mark E. [University of York, York YO10 5DD (United Kingdom); Weller, Sophie [University of Oxford, South Parks Road, Oxford OX1 3QR (United Kingdom); Ignatyev, Konstantin; Geraki, Kalotina; Quinn, Paul D.; Mosselmans, J. Frederick W., E-mail: fred.mosselmans@diamond.ac.uk [Diamond Light Source, Harwell Campus, Didcot, Oxon OX11 0DE (United Kingdom)

    2014-01-01

    A new experimental set-up enabling microfocus fluorescence XANES mapping and microfocus XRD mapping on the same sample at beamline I18 at Diamond Light Source is described. To demonstrate this set-up the heterogeneous mineralogy in calcium carbonate granules excreted by the earthworm Lumbricus terrestris has been analysed. Data analysis methods have been developed which enable µXRD and µXANES two-dimensional maps to be compared. The use of fluorescence full spectral micro-X-ray absorption near-edge structure (µXANES) mapping is becoming more widespread in the hard energy regime. This experimental method using the Ca K-edge combined with micro-X-ray diffraction (µXRD) mapping of the same sample has been enabled on beamline I18 at Diamond Light Source. This combined approach has been used to probe both long- and short-range order in calcium carbonate granules produced by the earthworm Lumbricus terrestris. In granules produced by earthworms cultured in a control artificial soil, calcite and vaterite are observed in the granules. However, granules produced by earthworms cultivated in the same artificial soil amended with 500 p.p.m. Mg also contain an aragonite. The two techniques, µXRD and µXANES, probe different sample volumes but there is good agreement in the phase maps produced.

  14. Combining task-evoked and spontaneous activity to improve pre-operative brain mapping with fMRI.

    Science.gov (United States)

    Fox, Michael D; Qian, Tianyi; Madsen, Joseph R; Wang, Danhong; Li, Meiling; Ge, Manling; Zuo, Huan-Cong; Groppe, David M; Mehta, Ashesh D; Hong, Bo; Liu, Hesheng

    2016-01-01

    Noninvasive localization of brain function is used to understand and treat neurological disease, exemplified by pre-operative fMRI mapping prior to neurosurgical intervention. The principal approach for generating these maps relies on brain responses evoked by a task and, despite known limitations, has dominated clinical practice for over 20years. Recently, pre-operative fMRI mapping based on correlations in spontaneous brain activity has been demonstrated, however this approach has its own limitations and has not seen widespread clinical use. Here we show that spontaneous and task-based mapping can be performed together using the same pre-operative fMRI data, provide complimentary information relevant for functional localization, and can be combined to improve identification of eloquent motor cortex. Accuracy, sensitivity, and specificity of our approach are quantified through comparison with electrical cortical stimulation mapping in eight patients with intractable epilepsy. Broad applicability and reproducibility of our approach are demonstrated through prospective replication in an independent dataset of six patients from a different center. In both cohorts and every individual patient, we see a significant improvement in signal to noise and mapping accuracy independent of threshold, quantified using receiver operating characteristic curves. Collectively, our results suggest that modifying the processing of fMRI data to incorporate both task-based and spontaneous activity significantly improves functional localization in pre-operative patients. Because this method requires no additional scan time or modification to conventional pre-operative data acquisition protocols it could have widespread utility. Copyright © 2015. Published by Elsevier Inc.

  15. Variable-Weighted Linear Combination Model for Landslide Susceptibility Mapping: Case Study in the Shennongjia Forestry District, China

    Directory of Open Access Journals (Sweden)

    Wei Chen

    2017-11-01

    Full Text Available A landslide susceptibility map plays an essential role in urban and rural planning. The main purpose of this study is to establish a variable-weighted linear combination model (VWLC and assess its potential for landslide susceptibility mapping. Firstly, different objective methods are employed for data processing rather than the frequently-used subjective judgments: K-means clustering is used for classification; binarization is introduced to determine buffer length thresholds for locational elements (road, river, and fault; landslide area density is adopted as the contribution index; and a correlation analysis is conducted for suitable factor selection. Secondly, considering the dimension changes of the preference matrix varying with the different locations of the mapping cells, the variable weights of each optimal factor are determined based on the improved analytic hierarchy process (AHP. On this basis, the VWLC model is established and applied to regional landslide susceptibility mapping for the Shennongjia Forestry District, China, where shallow landslides frequently occur. The obtained map is then compared with a map using the traditional WLC, and the results of the comparison show that VWLC is more reasonable, with a higher accuracy, and can be used anywhere that has the same or similar geological and topographical conditions.

  16. Combining ambiguous chemical shift mapping with structure-based backbone and NOE assignment from 15N-NOESY

    KAUST Repository

    Jang, Richard

    2011-01-01

    Chemical shift mapping is an important technique in NMRbased drug screening for identifying the atoms of a target protein that potentially bind to a drug molecule upon the molecule\\'s introduction in increasing concentrations. The goal is to obtain a mapping of peaks with known residue assignment from the reference spectrum of the unbound protein to peaks with unknown assignment in the target spectrum of the bound protein. Although a series of perturbed spectra help to trace a path from reference peaks to target peaks, a one-to-one mapping generally is not possible, especially for large proteins, due to errors, such as noise peaks, missing peaks, missing but then reappearing, overlapped, and new peaks not associated with any peaks in the reference. Due to these difficulties, the mapping is typically done manually or semi-automatically. However, automated methods are necessary for high-throughput drug screening. We present PeakWalker, a novel peak walking algorithm for fast-exchange systems that models the errors explicitly and performs many-to-one mapping. On the proteins: hBclXL, UbcH5B, and histone H1, it achieves an average accuracy of over 95% with less than 1.5 residues predicted per target peak. Given these mappings as input, we present PeakAssigner, a novel combined structure-based backbone resonance and NOE assignment algorithm that uses just 15N-NOESY, while avoiding TOCSY experiments and 13C- labeling, to resolve the ambiguities for a one-toone mapping. On the three proteins, it achieves an average accuracy of 94% or better. Copyright © 2011 ACM.

  17. QTL mapping of combining ability and heterosis of agronomic traits in rice backcross recombinant inbred lines and hybrid crosses.

    Directory of Open Access Journals (Sweden)

    Zhen Qu

    Full Text Available BACKGROUND: Combining ability effects are very effective genetic parameters in deciding the next phase of breeding programs. Although some breeding strategies on the basis of evaluating combining ability have been utilized extensively in hybrid breeding, little is known about the genetic basis of combining ability. Combining ability is a complex trait that is controlled by polygenes. With the advent and development of molecular markers, it is feasible to evaluate the genetic bases of combining ability and heterosis of elite rice hybrids through QTL analysis. METHODOLOGY/PRINCIPAL FINDINGS: In the present study, we first developed a QTL-mapping method for dissecting combining ability and heterosis of agronomic traits. With three testcross populations and a BCRIL population in rice, biometric and QTL analyses were conducted for ten agronomic traits. The significance of general combining ability and special combining ability for most of the traits indicated the importance of both additive and non-additive effects on expression levels. A large number of additive effect QTLs associated with performance per se of BCRIL and general combining ability, and dominant effect QTLs associated with special combining ability and heterosis were identified for the ten traits. CONCLUSIONS/SIGNIFICANCE: The combining ability of agronomic traits could be analyzed by the QTL mapping method. The characteristics revealed by the QTLs for combining ability of agronomic traits were similar with those by multitudinous QTLs for agronomic traits with performance per se of BCRIL. Several QTLs (1-6 in this study were identified for each trait for combining ability. It demonstrated that some of the QTLs were pleiotropic or linked tightly with each other. The identification of QTLs responsible for combining ability and heterosis in the present study provides valuable information for dissecting genetic basis of combining ability.

  18. Three-dimensional glacier surface motion maps at the Gjalp eruption site, Iceland, inferred from combining InSAR and other ice-displacement data

    DEFF Research Database (Denmark)

    Gudmundsson, S.; Gudmundsson, M. T.; Bjornsson, H.

    2002-01-01

    be assumed. The 3-D motion maps are created by an optimization process that combines the complementary datasets. The optimization is based on a Markov random-field regularization and a simulated annealing algorithm. The 3-D motion maps show the pattern of gradually diminishing ice flow into the depression...

  19. Galaxy bias from the Dark Energy Survey Science Verification data: combining galaxy density maps and weak lensing maps

    Energy Technology Data Exchange (ETDEWEB)

    Chang, C.; Pujol, A.; Gaztañaga, E.; Amara, A.; Réfrégier, A.; Bacon, D.; Becker, M. R.; Bonnett, C.; Carretero, J.; Castander, F. J.; Crocce, M.; Fosalba, P.; Giannantonio, T.; Hartley, W.; Jarvis, M.; Kacprzak, T.; Ross, A. J.; Sheldon, E.; Troxel, M. A.; Vikram, V.; Zuntz, J.; Abbott, T. M. C.; Abdalla, F. B.; Allam, S.; Annis, J.; Benoit-Lévy, A.; Bertin, E.; Brooks, D.; Buckley-Geer, E.; Burke, D. L.; Capozzi, D.; Rosell, A. Carnero; Kind, M. Carrasco; Cunha, C. E.; D' Andrea, C. B.; da Costa, L. N.; Desai, S.; Diehl, H. T.; Dietrich, J. P.; Doel, P.; Eifler, T. F.; Estrada, J.; Evrard, A. E.; Flaugher, B.; Frieman, J.; Goldstein, D. A.; Gruen, D.; Gruendl, R. A.; Gutierrez, G.; Honscheid, K.; Jain, B.; James, D. J.; Kuehn, K.; Kuropatkin, N.; Lahav, O.; Li, T. S.; Lima, M.; Marshall, J. L.; Martini, P.; Melchior, P.; Miller, C. J.; Miquel, R.; Mohr, J. J.; Nichol, R. C.; Nord, B.; Ogando, R.; Plazas, A. A.; Reil, K.; Romer, A. K.; Roodman, A.; Rykoff, E. S.; Sanchez, E.; Scarpine, V.; Schubnell, M.; Sevilla-Noarbe, I.; Smith, R. C.; Soares-Santos, M.; Sobreira, F.; Suchyta, E.; Swanson, M. E. C.; Tarle, G.; Thomas, D.; Walker, A. R.

    2016-04-15

    We measure the redshift evolution of galaxy bias from a magnitude-limited galaxy sample by combining the galaxy density maps and weak lensing shear maps for a $\\sim$116 deg$^{2}$ area of the Dark Energy Survey (DES) Science Verification data. This method was first developed in Amara et al. (2012) and later re-examined in a companion paper (Pujol et al., in prep) with rigorous simulation tests and analytical treatment of tomographic measurements. In this work we apply this method to the DES SV data and measure the galaxy bias for a magnitude-limited galaxy sample. We find the galaxy bias and 1$\\sigma$ error bars in 4 photometric redshift bins to be 1.33$\\pm$0.18 (z=0.2-0.4), 1.19$\\pm$0.23 (z=0.4-0.6), 0.99$\\pm$0.36 ( z=0.6-0.8), and 1.66$\\pm$0.56 (z=0.8-1.0). These measurements are consistent at the 1-2$\\sigma$ level with mea- surements on the same dataset using galaxy clustering and cross-correlation of galaxies with CMB lensing. In addition, our method provides the only $\\sigma_8$-independent constraint among the three. We forward-model the main observational effects using mock galaxy catalogs by including shape noise, photo-z errors and masking effects. We show that our bias measurement from the data is consistent with that expected from simulations. With the forthcoming full DES data set, we expect this method to provide additional constraints on the galaxy bias measurement from more traditional methods. Furthermore, in the process of our measurement, we build up a 3D mass map that allows further exploration of the dark matter distribution and its relation to galaxy evolution.

  20. The outbreak of SARS mirrored by bibliometric mapping: Combining bibliographic coupling with the complete link cluster method

    Directory of Open Access Journals (Sweden)

    Bo Jarneving

    2007-01-01

    Full Text Available In this study a novel method of science mapping is presented which combines bibliographic coupling, as a measure of document-document similarity, with an agglomerative hierarchical cluster method. The focus in this study is on the mapping of so called ‘core documents’, a concept presented first in 1995 by Glänzel and Czerwon. The term ‘core document’ denote documents that have a central position in the research front in terms of many and strong bibliographic coupling links. The identification and mapping of core documents usually requires a large multidisciplinary research setting and in this study the 2003 volume of the Science Citation Index was applied. From this database, a sub-set of core documents reporting on the outbreak of SARS in 2002 was chosen for the demonstration of the application of this mapping method. It was demonstrated that the method, in this case, successfully identified interpretable research themes and that iterative clustering on two subsequent levels of cluster agglomeration may provide with useful and current information.

  1. Combining µXANES and µXRD mapping to analyse the heterogeneity in calcium carbonate granules excreted by the earthworm Lumbricus terrestris.

    Science.gov (United States)

    Brinza, Loredana; Schofield, Paul F; Hodson, Mark E; Weller, Sophie; Ignatyev, Konstantin; Geraki, Kalotina; Quinn, Paul D; Mosselmans, J Frederick W

    2014-01-01

    The use of fluorescence full spectral micro-X-ray absorption near-edge structure (µXANES) mapping is becoming more widespread in the hard energy regime. This experimental method using the Ca K-edge combined with micro-X-ray diffraction (µXRD) mapping of the same sample has been enabled on beamline I18 at Diamond Light Source. This combined approach has been used to probe both long- and short-range order in calcium carbonate granules produced by the earthworm Lumbricus terrestris. In granules produced by earthworms cultured in a control artificial soil, calcite and vaterite are observed in the granules. However, granules produced by earthworms cultivated in the same artificial soil amended with 500 p.p.m. Mg also contain an aragonite. The two techniques, µXRD and µXANES, probe different sample volumes but there is good agreement in the phase maps produced.

  2. Increasing the Accuracy of Mapping Urban Forest Carbon Density by Combining Spatial Modeling and Spectral Unmixing Analysis

    Directory of Open Access Journals (Sweden)

    Hua Sun

    2015-11-01

    Full Text Available Accurately mapping urban vegetation carbon density is challenging because of complex landscapes and mixed pixels. In this study, a novel methodology was proposed that combines a linear spectral unmixing analysis (LSUA with a linear stepwise regression (LSR, a logistic model-based stepwise regression (LMSR and k-Nearest Neighbors (kNN, to map the forest carbon density of Shenzhen City of China, using Landsat 8 imagery and sample plot data collected in 2014. The independent variables that contributed to statistically significantly improving the fit of a model to data and reducing the sum of squared errors were first selected from a total of 284 spectral variables derived from the image bands. The vegetation fraction from LSUA was then added as an independent variable. The results obtained using cross-validation showed that: (1 Compared to the methods without the vegetation information, adding the vegetation fraction increased the accuracy of mapping carbon density by 1%–9.3%; (2 As the observed values increased, the LSR and kNN residuals showed overestimates and underestimates for the smaller and larger observations, respectively, while LMSR improved the systematical over and underestimations; (3 LSR resulted in illogically negative and unreasonably large estimates, while KNN produced the greatest values of root mean square error (RMSE. The results indicate that combining the spatial modeling method LMSR and the spectral unmixing analysis LUSA, coupled with Landsat imagery, is most promising for increasing the accuracy of urban forest carbon density maps. In addition, this method has considerable potential for accurate, rapid and nondestructive prediction of urban and peri-urban forest carbon stocks with an acceptable level of error and low cost.

  3. Image Encryption Technology Based on Fractional Two-Dimensional Triangle Function Combination Discrete Chaotic Map Coupled with Menezes-Vanstone Elliptic Curve Cryptosystem

    Directory of Open Access Journals (Sweden)

    Zeyu Liu

    2018-01-01

    Full Text Available A new fractional two-dimensional triangle function combination discrete chaotic map (2D-TFCDM with the discrete fractional difference is proposed. We observe the bifurcation behaviors and draw the bifurcation diagrams, the largest Lyapunov exponent plot, and the phase portraits of the proposed map, respectively. On the application side, we apply the proposed discrete fractional map into image encryption with the secret keys ciphered by Menezes-Vanstone Elliptic Curve Cryptosystem (MVECC. Finally, the image encryption algorithm is analysed in four main aspects that indicate the proposed algorithm is better than others.

  4. Cerebral Metabolic Rate of Oxygen (CMRO2 ) Mapping by Combining Quantitative Susceptibility Mapping (QSM) and Quantitative Blood Oxygenation Level-Dependent Imaging (qBOLD).

    Science.gov (United States)

    Cho, Junghun; Kee, Youngwook; Spincemaille, Pascal; Nguyen, Thanh D; Zhang, Jingwei; Gupta, Ajay; Zhang, Shun; Wang, Yi

    2018-03-07

    To map the cerebral metabolic rate of oxygen (CMRO 2 ) by estimating the oxygen extraction fraction (OEF) from gradient echo imaging (GRE) using phase and magnitude of the GRE data. 3D multi-echo gradient echo imaging and perfusion imaging with arterial spin labeling were performed in 11 healthy subjects. CMRO 2 and OEF maps were reconstructed by joint quantitative susceptibility mapping (QSM) to process GRE phases and quantitative blood oxygen level-dependent (qBOLD) modeling to process GRE magnitudes. Comparisons with QSM and qBOLD alone were performed using ROI analysis, paired t-tests, and Bland-Altman plot. The average CMRO 2 value in cortical gray matter across subjects were 140.4 ± 14.9, 134.1 ± 12.5, and 184.6 ± 17.9 μmol/100 g/min, with corresponding OEFs of 30.9 ± 3.4%, 30.0 ± 1.8%, and 40.9 ± 2.4% for methods based on QSM, qBOLD, and QSM+qBOLD, respectively. QSM+qBOLD provided the highest CMRO 2 contrast between gray and white matter, more uniform OEF than QSM, and less noisy OEF than qBOLD. Quantitative CMRO 2 mapping that fits the entire complex GRE data is feasible by combining QSM analysis of phase and qBOLD analysis of magnitude. © 2018 International Society for Magnetic Resonance in Medicine.

  5. Construction of radioelement and dose rate baseline maps by combining ground and airborne radiometric data

    International Nuclear Information System (INIS)

    Rybach, L.; Medici, F.; Schwarz, G.F.

    1997-01-01

    For emergency situations like nuclear accidents, lost isotopic sources, debris of reactor-powered satellites etc. well-documented baseline information is indispensable. Maps of cosmic, terrestrial natural and artificial radiation can be constructed by assembling different datasets such as ground and airborne gamma spectrometry, direct dose rate measurements, and soil/rock samples. The in situ measurements were calibrated using the soil samples taken at/around the field measurement sites, the airborne measurements by a combination of in situ, and soil/rock sample data. The radioelement concentrations (Bq/kg) were in turn converted to dose-rate (nSv/h). First, the cosmic radiation map was constructed from a digital terrain model, averaging topographic heights within cells of 2 km X 2 km size. For the terrestrial radiation a total of 1615 ground data points were available, in addition to the airborne data. The artificial radiation map (Chernobyl and earlier fallout) has the smallest data base (184 data points from airborne and ground measurements). The dose rate map was constructed by summing up the above-mentioned contributions. It relies on a data base which corresponds to a density of about 1 point per 25 km 2 . The cosmic radiation map shows elevated dose rates in the high parts of the Swiss Alps. The cosmic dose rate ranges from 40 to 190 nSv/h, depending on altitude. The terrestrial dose rate maps show general agreement with lithology: elevated dose rates (100 to 200 nSv/h) characterize the Central Massifs of the Alps where crystalline rocks give a maximum of 370 nSv/h, whereas the sedimentary northern Alpine Foreland (Jura, Molasse basin) shows consistently lower dose rates (40-100 nSv/h). The artificial radiation map has its maximum value in the southern part of Switzerland (90 nSv/h). The map of total dose rate exhibits values from 55 to 570 nSv/h. These values are considerably higher than reported in the Radiation Atlas (''Natural Sources of Ionising

  6. Approaches to vegetation mapping and ecophysiological hypothesis testing using combined information from TIMS, AVIRIS, and AIRSAR

    Science.gov (United States)

    Oren, R.; Vane, G.; Zimmermann, R.; Carrere, V.; Realmuto, V.; Zebker, Howard A.; Schoeneberger, P.; Schoeneberger, M.

    1991-01-01

    The Tropical Rainforest Ecology Experiment (TREE) had two primary objectives: (1) to design a method for mapping vegetation in tropical regions using remote sensing and determine whether the result improves on available vegetation maps; and (2) to test a specific hypothesis on plant/water relations. Both objectives were thought achievable with the combined information from the Thermal Infrared Multispectral Scanner (TIMS), Airborne Visible/Infrared Imaging Spectrometer (AVIRIS), and Airborne Synthetic Aperture Radar (AIRSAR). Implicitly, two additional objectives were: (1) to ascertain that the range within each variable potentially measurable with the three instruments is large enough in the site, relative to the sensitivity of the instruments, so that differences between ecological groups may be detectable; and (2) to determine the ability of the three systems to quantify different variables and sensitivities. We found that the ranges in values of foliar nitrogen concentration, water availability, stand structure and species composition, and plant/water relations were large, even within the upland broadleaf vegetation type. The range was larger when other vegetation types were considered. Unfortunately, cloud cover and navigation errors compromised the utility of the TIMS and AVIRIS data. Nevertheless, the AIRSAR data alone appear to have improved on the available vegetation map for the study area. An example from an area converted to a farm is given to demonstrate how the combined information from AIRSAR, TIMS, and AVIRIS can uniquely identify distinct classes of land use. The example alludes to the potential utility of the three instruments for identifying vegetation at an ecological scale finer than vegetation types.

  7. NEREC, an effective brain mapping protocol for combined language and long-term memory functions.

    Science.gov (United States)

    Perrone-Bertolotti, Marcela; Girard, Cléa; Cousin, Emilie; Vidal, Juan Ricardo; Pichat, Cédric; Kahane, Philippe; Baciu, Monica

    2015-12-01

    Temporal lobe epilepsy can induce functional plasticity in temporoparietal networks involved in language and long-term memory processing. Previous studies in healthy subjects have revealed the relative difficulty for this network to respond effectively across different experimental designs, as compared to more reactive regions such as frontal lobes. For a protocol to be optimal for clinical use, it has to first show robust effects in a healthy cohort. In this study, we developed a novel experimental paradigm entitled NEREC, which is able to reveal the robust participation of temporoparietal networks in a uniquely combined language and memory task, validated in an fMRI study with healthy subjects. Concretely, NEREC is composed of two runs: (a) an intermixed language-memory task (confrontation naming associated with encoding in nonverbal items, NE) to map language (i.e., word retrieval and lexico-semantic processes) combined with simultaneous long-term verbal memory encoding (NE items named but also explicitly memorized) and (b) a memory retrieval task of items encoded during NE (word recognition, REC) intermixed with new items. Word recognition is based on both perceptual-semantic familiarity (feeling of 'know') and accessing stored memory representations (remembering). In order to maximize the remembering and recruitment of medial temporal lobe structures, we increased REC difficulty by changing the modality of stimulus presentation (from nonverbal during NE to verbal during REC). We report that (a) temporoparietal activation during NE was attributable to both lexico-semantic (language) and memory (episodic encoding and semantic retrieval) processes; that (b) encoding activated the left hippocampus, bilateral fusiform, and bilateral inferior temporal gyri; and that (c) task recognition (recollection) activated the right hippocampus and bilateral but predominant left fusiform gyrus. The novelty of this protocol consists of (a) combining two tasks in one (language

  8. Soil Carbon Mapping in Low Relief Areas with Combined Land Use Types and Percentages

    Science.gov (United States)

    Liu, Y. L.; Wu, Z. H.; Chen, Y. Y.; Wang, B. Z.

    2018-05-01

    Accurate mapping of soil carbon in low relief areas is of great challenge because of the defect of conventional "soil-landscape" model. Efforts have been made to integrate the land use information in the modelling and mapping of soil organic carbon (SOC), in which the spatial context was ignored. With 256 topsoil samples collected from Jianghan Plain, we aim to (i) explore the land-use dependency of SOC via one-way ANOVA; (ii) investigate the "spillover effect" of land use on SOC content; (iii) examine the feasibility of land use types and percentages (obtained with a 200-meter buffer) for soil mapping via regression Kriging (RK) models. Results showed that the SOC of paddy fields was higher than that of woodlands and irrigated lands. The land use type could explain 20.5 % variation of the SOC, and the value increased to 24.7 % when the land use percentages were considered. SOC was positively correlated with the percentage of water area and irrigation canals. Further research indicated that SOC of irrigated lands was significantly correlated with the percentage of water area and irrigation canals, while paddy fields and woodlands did not show similar trends. RK model that combined land use types and percentages outperformed the other models with the lowest values of RMSEC (5.644 g/kg) and RMSEP (6.229 g/kg), and the highest R2C (0.193) and R2P (0.197). In conclusions, land use types and percentages serve as efficient indicators for the SOC mapping in plain areas. Additionally, irrigation facilities contributed to the farmland SOC sequestration especially in irrigated lands.

  9. Probabilistic atlas-based segmentation of combined T1-weighted and DUTE MRI for calculation of head attenuation maps in integrated PET/MRI scanners.

    Science.gov (United States)

    Poynton, Clare B; Chen, Kevin T; Chonde, Daniel B; Izquierdo-Garcia, David; Gollub, Randy L; Gerstner, Elizabeth R; Batchelor, Tracy T; Catana, Ciprian

    2014-01-01

    We present a new MRI-based attenuation correction (AC) approach for integrated PET/MRI systems that combines both segmentation- and atlas-based methods by incorporating dual-echo ultra-short echo-time (DUTE) and T1-weighted (T1w) MRI data and a probabilistic atlas. Segmented atlases were constructed from CT training data using a leave-one-out framework and combined with T1w, DUTE, and CT data to train a classifier that computes the probability of air/soft tissue/bone at each voxel. This classifier was applied to segment the MRI of the subject of interest and attenuation maps (μ-maps) were generated by assigning specific linear attenuation coefficients (LACs) to each tissue class. The μ-maps generated with this "Atlas-T1w-DUTE" approach were compared to those obtained from DUTE data using a previously proposed method. For validation of the segmentation results, segmented CT μ-maps were considered to the "silver standard"; the segmentation accuracy was assessed qualitatively and quantitatively through calculation of the Dice similarity coefficient (DSC). Relative change (RC) maps between the CT and MRI-based attenuation corrected PET volumes were also calculated for a global voxel-wise assessment of the reconstruction results. The μ-maps obtained using the Atlas-T1w-DUTE classifier agreed well with those derived from CT; the mean DSCs for the Atlas-T1w-DUTE-based μ-maps across all subjects were higher than those for DUTE-based μ-maps; the atlas-based μ-maps also showed a lower percentage of misclassified voxels across all subjects. RC maps from the atlas-based technique also demonstrated improvement in the PET data compared to the DUTE method, both globally as well as regionally.

  10. Classification and Mapping of Paddy Rice by Combining Landsat and SAR Time Series Data

    Directory of Open Access Journals (Sweden)

    Seonyoung Park

    2018-03-01

    Full Text Available Rice is an important food resource, and the demand for rice has increased as population has expanded. Therefore, accurate paddy rice classification and monitoring are necessary to identify and forecast rice production. Satellite data have been often used to produce paddy rice maps with more frequent update cycle (e.g., every year than field surveys. Many satellite data, including both optical and SAR sensor data (e.g., Landsat, MODIS, and ALOS PALSAR, have been employed to classify paddy rice. In the present study, time series data from Landsat, RADARSAT-1, and ALOS PALSAR satellite sensors were synergistically used to classify paddy rice through machine learning approaches over two different climate regions (sites A and B. Six schemes considering the composition of various combinations of input data by sensor and collection date were evaluated. Scheme 6 that fused optical and SAR sensor time series data at the decision level yielded the highest accuracy (98.67% for site A and 93.87% for site B. Performance of paddy rice classification was better in site A than site B, which consists of heterogeneous land cover and has low data availability due to a high cloud cover rate. This study also proposed Paddy Rice Mapping Index (PMI considering spectral and phenological characteristics of paddy rice. PMI represented well the spatial distribution of paddy rice in both regions. Google Earth Engine was adopted to produce paddy rice maps over larger areas using the proposed PMI-based approach.

  11. USGS Imagery Topo Large-scale Base Map Service from The National Map

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — The USGS Imagery Topo Large service from The National Map (TNM) is a dynamic topographic base map service that combines the best available data (Boundaries,...

  12. Unpacking the cognitive map: the parallel map theory of hippocampal function.

    Science.gov (United States)

    Jacobs, Lucia F; Schenk, Françoise

    2003-04-01

    In the parallel map theory, the hippocampus encodes space with 2 mapping systems. The bearing map is constructed primarily in the dentate gyrus from directional cues such as stimulus gradients. The sketch map is constructed within the hippocampus proper from positional cues. The integrated map emerges when data from the bearing and sketch maps are combined. Because the component maps work in parallel, the impairment of one can reveal residual learning by the other. Such parallel function may explain paradoxes of spatial learning, such as learning after partial hippocampal lesions, taxonomic and sex differences in spatial learning, and the function of hippocampal neurogenesis. By integrating evidence from physiology to phylogeny, the parallel map theory offers a unified explanation for hippocampal function.

  13. Initial experience of a novel mapping system combined with remote magnetic navigation in the catheter ablation of atrial fibrillation

    DEFF Research Database (Denmark)

    Lin, Changjian; Pehrson, Steen; Jacobsen, Peter Karl

    2017-01-01

    the novel mapping system, LA mapping time was fast (308 ± 60 seconds) with detailed anatomy points (178,831 ± 70,897) collected and magnetic points throughout LA. At the end of the procedures in Group A, the LA model was confirmed to be stable and its location was within the distance threshold (1 mm......). Procedure time (117.9 ± 29.6 minutes vs. 119.2 ± 29.7 minutes, P = 0.89), fluoroscopy time (6.1 ± 2.4 minutes vs. 4.8 ± 2.2 minutes, P = 0.07), and ablation time (28.0 ± 12.9 minutes vs. 27.9 ± 15.8 minutes, P = 0.98) were similar in Group A versus Group B, respectively. No complications occurred in either...... of a novel 3D mapping system (EnSite Precision mapping system) combined with RMN (Niobe ES, Stereotaxis, Inc., St. Louis, MO, USA) for atrial fibrillation (AF) ablation. METHODS: In this prospective nonrandomized study, two groups of patients were treated in our center for drug refractory AF. Patients were...

  14. Progress in national-scale landslide susceptibility mapping in Romania using a combined statistical-heuristical approach

    Science.gov (United States)

    Bălteanu, Dan; Micu, Mihai; Malet, Jean-Philippe; Jurchescu, Marta; Sima, Mihaela; Kucsicsa, Gheorghe; Dumitrică, Cristina; Petrea, Dănuţ; Mărgărint, Ciprian; Bilaşco, Ştefan; Văcăreanu, Radu; Georgescu, Sever; Senzaconi, Francisc

    2017-04-01

    Landslide processes represent a very widespread geohazard in Romania, affecting mainly the hilly and plateau regions as well as the mountain sectors developed on flysch formations. Two main projects provided the framework for improving the existing national landslide susceptibility map (Bălteanu et al. 2010): the ELSUS (Pan-European and nation-wide landslide susceptibility assessment, EC-CERG) and the RO-RISK (Disaster Risk Evaluation at National Level, ESF-POCA) projects. The latter one, a flagship project aiming at strengthening risk prevention and management in Romania, focused on a national-level evaluation of the main risks in the country including landslides. The strategy for modeling landslide susceptibility was designed based on the experience gained from continental and national level assessments conducted in the frame of the International Programme on Landslides (IPL) project IPL-162, the European Landslides Expert Group - JRC and the ELSUS project. The newly proposed landslide susceptibility model used as input a reduced set of landslide conditioning factor maps available at scales of 1:100,000 - 1:200,000 and consisting of lithology, slope angle and land cover. The input data was further differentiated for specific natural environments, defined here as morpho-structural units in order to incorporate differences induced by elevation (vertical climatic zonation), morpho-structure as well as neotectonic features. In order to best discern the specific landslide conditioning elements, the analysis has been carried out for one single process category, namely slides. The existence of a landslide inventory covering the whole country's territory ( 30,000 records, Micu et al. 2014), although affected by incompleteness and lack of homogeneity, allowed for the application of a semi-quantitative, mixed statistical-heuristical approach having the advantage of combining the objectivity of statistics with expert-knowledge in calibrating class and factor weights. The

  15. Benthic Habitat Mapping by Combining Lyzenga’s Optical Model and Relative Water Depth Model in Lintea Island, Southeast Sulawesi

    Science.gov (United States)

    Hafizt, M.; Manessa, M. D. M.; Adi, N. S.; Prayudha, B.

    2017-12-01

    Benthic habitat mapping using satellite data is one challenging task for practitioners and academician as benthic objects are covered by light-attenuating water column obscuring object discrimination. One common method to reduce this water-column effect is by using depth-invariant index (DII) image. However, the application of the correction in shallow coastal areas is challenging as a dark object such as seagrass could have a very low pixel value, preventing its reliable identification and classification. This limitation can be solved by specifically applying a classification process to areas with different water depth levels. The water depth level can be extracted from satellite imagery using Relative Water Depth Index (RWDI). This study proposed a new approach to improve the mapping accuracy, particularly for benthic dark objects by combining the DII of Lyzenga’s water column correction method and the RWDI of Stumpt’s method. This research was conducted in Lintea Island which has a high variation of benthic cover using Sentinel-2A imagery. To assess the effectiveness of the proposed new approach for benthic habitat mapping two different classification procedures are implemented. The first procedure is the commonly applied method in benthic habitat mapping where DII image is used as input data to all coastal area for image classification process regardless of depth variation. The second procedure is the proposed new approach where its initial step begins with the separation of the study area into shallow and deep waters using the RWDI image. Shallow area was then classified using the sunglint-corrected image as input data and the deep area was classified using DII image as input data. The final classification maps of those two areas were merged as a single benthic habitat map. A confusion matrix was then applied to evaluate the mapping accuracy of the final map. The result shows that the new proposed mapping approach can be used to map all benthic objects in

  16. Combined visualization for noise mapping of industrial facilities based on ray-tracing and thin plate splines

    Science.gov (United States)

    Ovsiannikov, Mikhail; Ovsiannikov, Sergei

    2017-01-01

    The paper presents the combined approach to noise mapping and visualizing of industrial facilities sound pollution using forward ray tracing method and thin-plate spline interpolation. It is suggested to cauterize industrial area in separate zones with similar sound levels. Equivalent local source is defined for range computation of sanitary zones based on ray tracing algorithm. Computation of sound pressure levels within clustered zones are based on two-dimension spline interpolation of measured data on perimeter and inside the zone.

  17. Functional mapping of the sensorimotor cortex: combined use of magnetoencephalography, functional MRI, and motor evoked potentials

    International Nuclear Information System (INIS)

    Morioka, T.; Fujii, K.; Fukui, M.; Mizushima, A.; Matsumoto, S.; Hasuo, K.; Yamamoto, T.; Tobimatsu, S.

    1995-01-01

    Combined use of magnetoencephalography (MEG), functional magnetic resonance imaging (f-MRI), and motor evoked potentials (MEPs) was carried out on one patient in an attempt to localise precisely a structural lesion to the central sulcus. A small cyst in the right frontoparietal region was thought to be the cause of generalised seizures in an otherwise asymptomatic woman. First the primary sensory cortex was identified with magnetic source imaging (MSI) of somatosensory evoked magnetic fields using MEG and MRI. Second, the motor area of the hand was identified using f-MRI during handsqueezing. Then transcranial magnetic stimulation localised the hand motor area on the scalp, which was mapped onto the MRI. There was a good agreement between MSI, f-MRI and MEP as to the location of the sensorimotor cortex and its relationship to the lesion. Multimodality mapping techniques may thus prove useful in the precise localisation of cortical lesions, and in the preoperative determination of the best treatment for peri-rolandic lesions. (orig.)

  18. Functional mapping of the sensorimotor cortex: combined use of magnetoencephalography, functional MRI, and motor evoked potentials

    Energy Technology Data Exchange (ETDEWEB)

    Morioka, T. [Dept. of Neurosurgery, Neurological Inst., Kyshu Univ., Fukuoka (Japan); Fujii, K. [Dept. of Neurosurgery, Neurological Inst., Kyshu Univ., Fukuoka (Japan); Fukui, M. [Dept. of Neurosurgery, Neurological Inst., Kyshu Univ., Fukuoka (Japan); Mizushima, A. [Dept. of Radiology, Kyushu Univ. Fukuoka (Japan); Matsumoto, S. [Dept. of Radiology, Kyushu Univ. Fukuoka (Japan); Hasuo, K. [Dept. of Radiology, Kyushu Univ. Fukuoka (Japan); Yamamoto, T. [Dept. of Otolaryngology, Kyushu Univ. Fukuoka (Japan); Tobimatsu, S. [Dept. of Clinical Neurophysiology, Neurological Inst., Kyushu Univ., Fukuoka (Japan)

    1995-10-01

    Combined use of magnetoencephalography (MEG), functional magnetic resonance imaging (f-MRI), and motor evoked potentials (MEPs) was carried out on one patient in an attempt to localise precisely a structural lesion to the central sulcus. A small cyst in the right frontoparietal region was thought to be the cause of generalised seizures in an otherwise asymptomatic woman. First the primary sensory cortex was identified with magnetic source imaging (MSI) of somatosensory evoked magnetic fields using MEG and MRI. Second, the motor area of the hand was identified using f-MRI during handsqueezing. Then transcranial magnetic stimulation localised the hand motor area on the scalp, which was mapped onto the MRI. There was a good agreement between MSI, f-MRI and MEP as to the location of the sensorimotor cortex and its relationship to the lesion. Multimodality mapping techniques may thus prove useful in the precise localisation of cortical lesions, and in the preoperative determination of the best treatment for peri-rolandic lesions. (orig.)

  19. Elasticity maps of living neurons measured by combined fluorescence and atomic force microscopy.

    Science.gov (United States)

    Spedden, Elise; White, James D; Naumova, Elena N; Kaplan, David L; Staii, Cristian

    2012-09-05

    Detailed knowledge of mechanical parameters such as cell elasticity, stiffness of the growth substrate, or traction stresses generated during axonal extensions is essential for understanding the mechanisms that control neuronal growth. Here, we combine atomic force microscopy-based force spectroscopy with fluorescence microscopy to produce systematic, high-resolution elasticity maps for three different types of live neuronal cells: cortical (embryonic rat), embryonic chick dorsal root ganglion, and P-19 (mouse embryonic carcinoma stem cells) neurons. We measure how the stiffness of neurons changes both during neurite outgrowth and upon disruption of microtubules of the cell. We find reversible local stiffening of the cell during growth, and show that the increase in local elastic modulus is primarily due to the formation of microtubules. We also report that cortical and P-19 neurons have similar elasticity maps, with elastic moduli in the range 0.1-2 kPa, with typical average values of 0.4 kPa (P-19) and 0.2 kPa (cortical). In contrast, dorsal root ganglion neurons are stiffer than P-19 and cortical cells, yielding elastic moduli in the range 0.1-8 kPa, with typical average values of 0.9 kPa. Finally, we report no measurable influence of substrate protein coating on cell body elasticity for the three types of neurons. Copyright © 2012 Biophysical Society. Published by Elsevier Inc. All rights reserved.

  20. Generalized Smooth Transition Map Between Tent and Logistic Maps

    Science.gov (United States)

    Sayed, Wafaa S.; Fahmy, Hossam A. H.; Rezk, Ahmed A.; Radwan, Ahmed G.

    There is a continuous demand on novel chaotic generators to be employed in various modeling and pseudo-random number generation applications. This paper proposes a new chaotic map which is a general form for one-dimensional discrete-time maps employing the power function with the tent and logistic maps as special cases. The proposed map uses extra parameters to provide responses that fit multiple applications for which conventional maps were not enough. The proposed generalization covers also maps whose iterative relations are not based on polynomials, i.e. with fractional powers. We introduce a framework for analyzing the proposed map mathematically and predicting its behavior for various combinations of its parameters. In addition, we present and explain the transition map which results in intermediate responses as the parameters vary from their values corresponding to tent map to those corresponding to logistic map case. We study the properties of the proposed map including graph of the map equation, general bifurcation diagram and its key-points, output sequences, and maximum Lyapunov exponent. We present further explorations such as effects of scaling, system response with respect to the new parameters, and operating ranges other than transition region. Finally, a stream cipher system based on the generalized transition map validates its utility for image encryption applications. The system allows the construction of more efficient encryption keys which enhances its sensitivity and other cryptographic properties.

  1. Multiplatform serum metabolic phenotyping combined with pathway mapping to identify biochemical differences in smokers.

    Science.gov (United States)

    Kaluarachchi, Manuja R; Boulangé, Claire L; Garcia-Perez, Isabel; Lindon, John C; Minet, Emmanuel F

    2016-10-01

    Determining perturbed biochemical functions associated with tobacco smoking should be helpful for establishing causal relationships between exposure and adverse events. A multiplatform comparison of serum of smokers (n = 55) and never-smokers (n = 57) using nuclear magnetic resonance spectroscopy, UPLC-MS and statistical modeling revealed clustering of the classes, distinguished by metabolic biomarkers. The identified metabolites were subjected to metabolic pathway enrichment, modeling adverse biological events using available databases. Perturbation of metabolites involved in chronic obstructive pulmonary disease, cardiovascular diseases and cancer were identified and discussed. Combining multiplatform metabolic phenotyping with knowledge-based mapping gives mechanistic insights into disease development, which can be applied to next-generation tobacco and nicotine products for comparative risk assessment.

  2. NEPR Benthic Habitat Map 2015

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — This benthic habitat map was created from a semi-automated habitat mapping process, using a combination of bathymetry, satellite imagery, aerial imagery and...

  3. Examining geographic patterns of mortality: the atlas of mortality in small areas in Spain (1987-1995).

    Science.gov (United States)

    Benach, Joan; Yasui, Yutaka; Borrell, Carme; Rosa, Elisabeth; Pasarín, M Isabel; Benach, Núria; Español, Esther; Martínez, José Miguel; Daponte, Antonio

    2003-06-01

    Small-area mortality atlases have been demonstrated to be a useful tool for both showing general geographical patterns in mortality data and identifying specific high-risk locations. In Spain no study has so far systematically examined geographic patterns of small-area mortality for the main causes of death. This paper presents the main features, contents and potential uses of the Spanish Atlas of Mortality in small areas (1987-1995). Population data for 2,218 small areas were drawn from the 1991 Census. Aggregated mortality data for 14 specific causes of death for the period 1987-1995 were obtained for each small area. Empirical Bayes-model-based estimates of age-adjusted relative risk were displayed in small-area maps for each cause/gender/age group (0-64 or 65 and over) combination using the same range of values (i.e. septiles) and colour schemes. The 'Spanish Atlas of Mortality' includes multiple choropleth (area-shaded) small-area maps and graphs to answer different questions about the data. The atlas is divided into three main sections. Section 1 includes the methods and comments on the main maps. Section 2 presents a two-page layout for each leading cause of death by gender including 1) a large map with relative risk estimates, 2) a map that indicates high- and low-risk small areas, 3) a graph with median and interquartile range of relative risk estimates for 17 large regions of Spain, and 4) relative-risk maps for two age groups. Section 3 provides specific information on the geographical units of analysis, statistical methods and other supplemental maps. The 'Spanish Atlas of Mortality' is a useful tool for examining geographical patterns of mortality risk and identifying specific high-risk areas. Mortality patterns displayed in the atlas may have important implications for research and social/health policy planning purposes.

  4. ReactionMap: an efficient atom-mapping algorithm for chemical reactions.

    Science.gov (United States)

    Fooshee, David; Andronico, Alessio; Baldi, Pierre

    2013-11-25

    Large databases of chemical reactions provide new data-mining opportunities and challenges. Key challenges result from the imperfect quality of the data and the fact that many of these reactions are not properly balanced or atom-mapped. Here, we describe ReactionMap, an efficient atom-mapping algorithm. Our approach uses a combination of maximum common chemical subgraph search and minimization of an assignment cost function derived empirically from training data. We use a set of over 259,000 balanced atom-mapped reactions from the SPRESI commercial database to train the system, and we validate it on random sets of 1000 and 17,996 reactions sampled from this pool. These large test sets represent a broad range of chemical reaction types, and ReactionMap correctly maps about 99% of the atoms and about 96% of the reactions, with a mean time per mapping of 2 s. Most correctly mapped reactions are mapped with high confidence. Mapping accuracy compares favorably with ChemAxon's AutoMapper, versions 5 and 6.1, and the DREAM Web tool. These approaches correctly map 60.7%, 86.5%, and 90.3% of the reactions, respectively, on the same data set. A ReactionMap server is available on the ChemDB Web portal at http://cdb.ics.uci.edu .

  5. Visualizing data for environmental analysis

    International Nuclear Information System (INIS)

    Benson, J.

    1997-01-01

    The Environmental Restoration Project at Los Alamos National Laboratory (LANL) has over 11,000 sampling locations in a 44 square mile area. The sample analyses contain raw analytical chemistry values for over 2,300 analytes and compounds used to define and remediate contaminated areas at LANL. The data consist of 2.5 million records in an oracle database. Maps are often used to visualize the data. Problems arise when a client specifies a particular kind of map without fully understanding the limitations of the data or the map. The ability of maps to convey information is dependent on many factors, though all maps are data dependent. The quantity, spatial distribution, and numerical range of the data can limit use with certain kinds of maps. To address these issues and educate the clients, several types of statistical maps (e.g., choropleth, isarithm, and graduated symbol such as bubble and spike) used for environmental analysis were chosen to show the advantages, disadvantages, and data limitations of each. By examining both the complexity of the analytical data and the limitations of the map type, it is possible to consider how reality has been transformed through the map, and if that transformation accurately conveys the information present

  6. Visualizing data for environmental analysis

    Energy Technology Data Exchange (ETDEWEB)

    Benson, J.

    1997-04-01

    The Environmental Restoration Project at Los Alamos National Laboratory (LANL) has over 11,000 sampling locations in a 44 square mile area. The sample analyses contain raw analytical chemistry values for over 2,300 analytes and compounds used to define and remediate contaminated areas at LANL. The data consist of 2.5 million records in an oracle database. Maps are often used to visualize the data. Problems arise when a client specifies a particular kind of map without fully understanding the limitations of the data or the map. The ability of maps to convey information is dependent on many factors, though all maps are data dependent. The quantity, spatial distribution, and numerical range of the data can limit use with certain kinds of maps. To address these issues and educate the clients, several types of statistical maps (e.g., choropleth, isarithm, and graduated symbol such as bubble and spike) used for environmental analysis were chosen to show the advantages, disadvantages, and data limitations of each. By examining both the complexity of the analytical data and the limitations of the map type, it is possible to consider how reality has been transformed through the map, and if that transformation accurately conveys the information present.

  7. Mapping variation in radon potential both between and within geological units

    International Nuclear Information System (INIS)

    Miles, J C H; Appleton, J D

    2005-01-01

    Previously, the potential for high radon levels in UK houses has been mapped either on the basis of grouping the results of radon measurements in houses by grid squares or by geological units. In both cases, lognormal modelling of the distribution of radon concentrations was applied to allow the estimated proportion of houses above the UK radon Action Level (AL, 200 Bq m -3 ) to be mapped. This paper describes a method of combining the grid square and geological mapping methods to give more accurate maps than either method can provide separately. The land area is first divided up using a combination of bedrock and superficial geological characteristics derived from digital geological map data. Each different combination of geological characteristics may appear at the land surface in many discontinuous locations across the country. HPA has a database of over 430 000 houses in which long-term measurements of radon concentration have been made, and whose locations are accurately known. Each of these measurements is allocated to the appropriate bedrock-superficial geological combination underlying it. Taking each geological combination in turn, the spatial variation of radon potential is mapped, treating the combination as if it were continuous over the land area. All of the maps of radon potential within different geological combinations are then combined to produce a map of variation in radon potential over the whole land surface

  8. Temperature mapping and thermal dose calculation in combined radiation therapy and 13.56 MHz radiofrequency hyperthermia for tumor treatment

    Science.gov (United States)

    Kim, Jung Kyung; Prasad, Bibin; Kim, Suzy

    2017-02-01

    To evaluate the synergistic effect of radiotherapy and radiofrequency hyperthermia therapy in the treatment of lung and liver cancers, we studied the mechanism of heat absorption and transfer in the tumor using electro-thermal simulation and high-resolution temperature mapping techniques. A realistic tumor-induced mouse anatomy, which was reconstructed and segmented from computed tomography images, was used to determine the thermal distribution in tumors during radiofrequency (RF) heating at 13.56 MHz. An RF electrode was used as a heat source, and computations were performed with the aid of the multiphysics simulation platform Sim4Life. Experiments were carried out on a tumor-mimicking agar phantom and a mouse tumor model to obtain a spatiotemporal temperature map and thermal dose distribution. A high temperature increase was achieved in the tumor from both the computation and measurement, which elucidated that there was selective high-energy absorption in tumor tissue compared to the normal surrounding tissues. The study allows for effective treatment planning for combined radiation and hyperthermia therapy based on the high-resolution temperature mapping and high-precision thermal dose calculation.

  9. Generation of a Four-Class Attenuation Map for MRI-Based Attenuation Correction of PET Data in the Head Area Using a Novel Combination of STE/Dixon-MRI and FCM Clustering.

    Science.gov (United States)

    Khateri, Parisa; Saligheh Rad, Hamidreza; Jafari, Amir Homayoun; Fathi Kazerooni, Anahita; Akbarzadeh, Afshin; Shojae Moghadam, Mohsen; Aryan, Arvin; Ghafarian, Pardis; Ay, Mohammad Reza

    2015-12-01

    The aim of this study is to generate a four-class magnetic resonance imaging (MRI)-based attenuation map (μ-map) for attenuation correction of positron emission tomography (PET) data of the head area using a novel combination of short echo time (STE)/Dixon-MRI and a dedicated image segmentation method. MR images of the head area were acquired using STE and two-point Dixon sequences. μ-maps were derived from MRI images based on a fuzzy C-means (FCM) clustering method along with morphologic operations. Quantitative assessment was performed to evaluate generated MRI-based μ-maps compared to X-ray computed tomography (CT)-based μ-maps. The voxel-by-voxel comparison of MR-based and CT-based segmentation results yielded an average of more than 95 % for accuracy and specificity in the cortical bone, soft tissue, and air region. MRI-based μ-maps show a high correlation with those derived from CT scans (R (2) > 0.95). Results indicate that STE/Dixon-MRI data in combination with FCM-based segmentation yields precise MR-based μ-maps for PET attenuation correction in hybrid PET/MRI systems.

  10. Accuracy of Combined Computed Tomography Colonography and Dual Energy Iiodine Map Imaging for Detecting Colorectal masses using High-pitch Dual-source CT.

    Science.gov (United States)

    Sun, Kai; Han, Ruijuan; Han, Yang; Shi, Xuesen; Hu, Jiang; Lu, Bin

    2018-02-28

    To evaluate the diagnostic accuracy of combined computed tomography colonography (CTC) and dual-energy iodine map imaging for detecting colorectal masses using high-pitch dual-source CT, compared with optical colonography (OC) and histopathologic findings. Twenty-eight consecutive patients were prospectively enrolled in this study. All patients were underwent contrast-enhanced CTC acquisition using dual-energy mode and OC and pathologic examination. The size of the space-occupied mass, the CT value after contrast enhancement, and the iodine value were measured and statistically compared. The sensitivity, specificity, accuracy rate, and positive predictive and negative predictive values of dual-energy contrast-enhanced CTC were calculated and compared between conventional CTC and dual-energy iodine images. The iodine value of stool was significantly lower than the colonic neoplasia (P dual-energy iodine maps imaging was 95.6% (95% CI = 77.9%-99.2%). The specificity of the two methods was 42.8% (95% CI = 15.4%-93.5%) and 100% (95% CI = 47.9%-100%; P = 0.02), respectively. Compared with optical colonography and histopathology, combined CTC and dual-energy iodine maps imaging can distinguish stool and colonic neoplasia, distinguish between benign and malignant tumors initially and improve the diagnostic accuracy of CTC for colorectal cancer screening.

  11. Combined landslide inventory and susceptibility assessment based on different mapping units: an example from the Flemish Ardennes, Belgium

    Directory of Open Access Journals (Sweden)

    M. Van Den Eeckhaut

    2009-03-01

    Full Text Available For a 277 km2 study area in the Flemish Ardennes, Belgium, a landslide inventory and two landslide susceptibility zonations were combined to obtain an optimal landslide susceptibility assessment, in five classes. For the experiment, a regional landslide inventory, a 10 m × 10 m digital representation of topography, and lithological and soil hydrological information obtained from 1:50 000 scale maps, were exploited. In the study area, the regional inventory shows 192 landslides of the slide type, including 158 slope failures occurred before 1992 (model calibration set, and 34 failures occurred after 1992 (model validation set. The study area was partitioned in 2.78×106 grid cells and in 1927 topographic units. The latter are hydro-morphological units obtained by subdividing slope units based on terrain gradient. Independent models were prepared for the two terrain subdivisions using discriminant analysis. For grid cells, a single pixel was identified as representative of the landslide depletion area, and geo-environmental information for the pixel was obtained from the thematic maps. The landslide and geo-environmental information was used to model the propensity of the terrain to host landslide source areas. For topographic units, morphologic and hydrologic information and the proportion of lithologic and soil hydrological types in each unit, were used to evaluate landslide susceptibility, including the depletion and depositional areas. Uncertainty associated with the two susceptibility models was evaluated, and the model performance was tested using the independent landslide validation set. An heuristic procedure was adopted to combine the landslide inventory and the susceptibility zonations. The procedure makes optimal use of the available landslide and susceptibility information, minimizing the limitations inherent in the inventory and the susceptibility maps. For the established susceptibility classes, regulations to

  12. Combined landslide inventory and susceptibility assessment based on different mapping units: an example from the Flemish Ardennes, Belgium

    Science.gov (United States)

    van den Eeckhaut, M.; Reichenbach, P.; Guzzetti, F.; Rossi, M.; Poesen, J.

    2009-03-01

    For a 277 km2 study area in the Flemish Ardennes, Belgium, a landslide inventory and two landslide susceptibility zonations were combined to obtain an optimal landslide susceptibility assessment, in five classes. For the experiment, a regional landslide inventory, a 10 m × 10 m digital representation of topography, and lithological and soil hydrological information obtained from 1:50 000 scale maps, were exploited. In the study area, the regional inventory shows 192 landslides of the slide type, including 158 slope failures occurred before 1992 (model calibration set), and 34 failures occurred after 1992 (model validation set). The study area was partitioned in 2.78×106 grid cells and in 1927 topographic units. The latter are hydro-morphological units obtained by subdividing slope units based on terrain gradient. Independent models were prepared for the two terrain subdivisions using discriminant analysis. For grid cells, a single pixel was identified as representative of the landslide depletion area, and geo-environmental information for the pixel was obtained from the thematic maps. The landslide and geo-environmental information was used to model the propensity of the terrain to host landslide source areas. For topographic units, morphologic and hydrologic information and the proportion of lithologic and soil hydrological types in each unit, were used to evaluate landslide susceptibility, including the depletion and depositional areas. Uncertainty associated with the two susceptibility models was evaluated, and the model performance was tested using the independent landslide validation set. An heuristic procedure was adopted to combine the landslide inventory and the susceptibility zonations. The procedure makes optimal use of the available landslide and susceptibility information, minimizing the limitations inherent in the inventory and the susceptibility maps. For the established susceptibility classes, regulations to link terrain domains to appropriate land

  13. USGS Topo Base Map Service from The National Map

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — USGS Topo is a topographic tile cache base map that combines the most current data (Boundaries, Names, Transportation, Elevation, Hydrography, Land Cover, and other...

  14. USGS NAIPPlus Overlay Map Service from The National Map

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — The USGS NAIP Plus service from The National Map consists of National Agriculture Imagery Program (NAIP) and high resolution orthoimagery (HRO) that combine the...

  15. Combined Fat Imaging/Look Locker for mapping of lipid spin-lattice (T1) relaxation time

    Science.gov (United States)

    Jihyun Park, Annie; Yung, Andrew; Kozlowski, Piotr; Reinsberg, Stefan

    2012-10-01

    Tumor hypoxia is a main problem arising in the treatment of cancer due to its resistance to cytotoxic therapy such as radiation and chemotherapy, and selection for more aggressive tumor phenotypes. Attempts to improve and quantify tumor oxygenation are in development and tools to assess the success of such schemes are required. Monitoring oxygen level with MRI using T1 based method (where oxygen acts as T1 shortening agent) is a dynamic and noninvasive way to study tumor characteristics. The method's sensitivity to oxygen is higher in lipids than in water due to higher oxygen solubility in lipid. Our study aims to develop a time-efficient method to spatially map T1 of fat inside the tumor. We are combining two techniques: Fat/Water imaging and Look Locker (a rapid T1 measurement technique). Fat/Water Imaging is done with either Dixon or Direct Phase Encoding (DPE) method. The combination of these techniques poses new challenges that are tackled using spin dynamics simulations as well as experiments in vitro and in vivo.

  16. Landslide susceptibility mapping by combining the three methods Fuzzy Logic, Frequency Ratio and Analytical Hierarchy Process in Dozain basin

    Directory of Open Access Journals (Sweden)

    E. Tazik

    2014-10-01

    Full Text Available Landslides are among the most important natural hazards that lead to modification of the environment. Therefore, studying of this phenomenon is so important in many areas. Because of the climate conditions, geologic, and geomorphologic characteristics of the region, the purpose of this study was landslide hazard assessment using Fuzzy Logic, frequency ratio and Analytical Hierarchy Process method in Dozein basin, Iran. At first, landslides occurred in Dozein basin were identified using aerial photos and field studies. The influenced landslide parameters that were used in this study including slope, aspect, elevation, lithology, precipitation, land cover, distance from fault, distance from road and distance from river were obtained from different sources and maps. Using these factors and the identified landslide, the fuzzy membership values were calculated by frequency ratio. Then to account for the importance of each of the factors in the landslide susceptibility, weights of each factor were determined based on questionnaire and AHP method. Finally, fuzzy map of each factor was multiplied to its weight that obtained using AHP method. At the end, for computing prediction accuracy, the produced map was verified by comparing to existing landslide locations. These results indicate that the combining the three methods Fuzzy Logic, Frequency Ratio and Analytical Hierarchy Process method are relatively good estimators of landslide susceptibility in the study area. According to landslide susceptibility map about 51% of the occurred landslide fall into the high and very high susceptibility zones of the landslide susceptibility map, but approximately 26 % of them indeed located in the low and very low susceptibility zones.

  17. Nanometer-scale, quantitative composition mappings of InGaN layers from a combination of scanning transmission electron microscopy and energy dispersive x-ray spectroscopy

    International Nuclear Information System (INIS)

    Pantzas, K; Voss, P L; Ougazzaden, A; Patriarche, G; Largeau, L; Mauguin, O; Troadec, D; Gautier, S; Moudakir, T; Suresh, S

    2012-01-01

    Using elastic scattering theory we show that a small set of energy dispersive x-ray spectroscopy (EDX) measurements is sufficient to experimentally evaluate the scattering function of electrons in high-angle annular dark field scanning transmission microscopy (HAADF-STEM). We then demonstrate how to use this function to transform qualitative HAADF-STEM images of InGaN layers into precise, quantitative chemical maps of the indium composition. The maps obtained in this way combine the resolution of HAADF-STEM and the chemical precision of EDX. We illustrate the potential of such chemical maps by using them to investigate nanometer-scale fluctuations in the indium composition and their impact on the growth of epitaxial InGaN layers. (paper)

  18. USGS Imagery Topo Base Map Service from The National Map

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — USGS Imagery Topo is a topographic tile cache base map with orthoimagery as a backdrop, and combines the most current data (Boundaries, Names, Transportation,...

  19. HectoMAPping the Universe. Karl Schwarzschild Award Lecture 2014

    Science.gov (United States)

    Geller, Margaret J.; Hwang, Ho Seong

    2015-06-01

    During the last three decades progress in mapping the Universe from an age of 400 000 years to the present has been stunning. Instrument/telescope combinations have naturally determined the sampling of various redshift ranges. Here we outline the impact of the Hectospec on the MMT on exploration of the Universe in the redshift range 0.2 ⪉ z ⪉ 0.8. We focus on dense redshift surveys, SHELS and HectoMAP. SHELS is a complete magnitude limited survey covering 8 square degrees. The HectoMAP survey combines a red-selected dense redshift survey and a weak lensing map covering 50 square degrees. Combining the dense redshift survey with a Subaru HyperSuprimeCam (HSC) weak lensing map will provide a powerful probe of the way galaxies trace the distribution of dark matter on a wide range of physical scales.

  20. Combining Kohonen maps with Arima time series models to forecast traffic flow

    NARCIS (Netherlands)

    van der Voort, Mascha C.; Dougherty, Mark; Dougherty, M.S.; Watson, Susan

    1996-01-01

    A hybrid method of short-term traffic forecasting is introduced; the KARIMA method. The technique uses a Kohonen self-organizing map as an initial classifier; each class has an individually tuned ARIMA model associated with it. Using a Kohonen map which is hexagonal in layout eases the problem of

  1. USGS NAIP Imagery Overlay Map Service from The National Map

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — The USGS NAIP Imagery service from The National Map (TNM) consists of high resolution images that combine the visual attributes of an aerial photograph with the...

  2. Constraints on Cosmological Parameters from the Angular Power Spectrum of a Combined 2500 deg$^2$ SPT-SZ and Planck Gravitational Lensing Map

    Energy Technology Data Exchange (ETDEWEB)

    Simard, G.; et al.

    2017-12-20

    We report constraints on cosmological parameters from the angular power spectrum of a cosmic microwave background (CMB) gravitational lensing potential map created using temperature data from 2500 deg$^2$ of South Pole Telescope (SPT) data supplemented with data from Planck in the same sky region, with the statistical power in the combined map primarily from the SPT data. We fit the corresponding lensing angular power spectrum to a model including cold dark matter and a cosmological constant ($\\Lambda$CDM), and to models with single-parameter extensions to $\\Lambda$CDM. We find constraints that are comparable to and consistent with constraints found using the full-sky Planck CMB lensing data. Specifically, we find $\\sigma_8 \\Omega_{\\rm m}^{0.25}=0.598 \\pm 0.024$ from the lensing data alone with relatively weak priors placed on the other $\\Lambda$CDM parameters. In combination with primary CMB data from Planck, we explore single-parameter extensions to the $\\Lambda$CDM model. We find $\\Omega_k = -0.012^{+0.021}_{-0.023}$ or $M_{\

  3. Dynamics of Open Systems with Affine Maps

    International Nuclear Information System (INIS)

    Zhang Da-Jian; Liu Chong-Long; Tong Dian-Min

    2015-01-01

    Many quantum systems of interest are initially correlated with their environments and the reduced dynamics of open systems are an interesting while challenging topic. Affine maps, as an extension of completely positive maps, are a useful tool to describe the reduced dynamics of open systems with initial correlations. However, it is unclear what kind of initial state shares an affine map. In this study, we give a sufficient condition of initial states, in which the reduced dynamics can always be described by an affine map. Our result shows that if the initial states of the combined system constitute a convex set, and if the correspondence between the initial states of the open system and those of the combined system, defined by taking the partial trace, is a bijection, then the reduced dynamics of the open system can be described by an affine map. (paper)

  4. USING OF THERMAL STRUCTURE MAPS FOR VEGETATION MAPPING (CASE OF ALTACHEYSKY WILDLIFE AREA

    Directory of Open Access Journals (Sweden)

    L. A. Abramova

    2014-01-01

    Full Text Available Thermal infrared imagery contains considerable amount of qualitative information about ground objects and landscapes. In spite of it, this type of data is often used to derive quantitative information such as land or sea surface temperatures. This paper describes the examination of Altacheysky wildlife area situated in the southern part of Buryatia Republic, Mukhorshibirsky district based on Landsat imagery and ground observations. Ground observations were led to study the vegetation cover of the area. Landsat imagery were used to make multitemporal thermal infrared image combined of 7 ETM+ scenes and to make multispectral image combined of different zones of a OLI scene. Both images were classified. The multitemporal thermal infrared classification result was used to compose thermal structure map of the wildlife area. Comparison of the map, multispectral image classification result and ground observations data reveals that thermal structure map describes better the particularities of Altacheysky wildlife area vegetation cover.

  5. Detailed spatiotemporal brain mapping of chromatic vision combining high-resolution VEP with fMRI and retinotopy.

    Science.gov (United States)

    Pitzalis, Sabrina; Strappini, Francesca; Bultrini, Alessandro; Di Russo, Francesco

    2018-03-13

    Neuroimaging studies have identified so far, several color-sensitive visual areas in the human brain, and the temporal dynamics of these activities have been separately investigated using the visual-evoked potentials (VEPs). In the present study, we combined electrophysiological and neuroimaging methods to determine a detailed spatiotemporal profile of chromatic VEP and to localize its neural generators. The accuracy of the present co-registration study was obtained by combining standard fMRI data with retinotopic and motion mapping data at the individual level. We found a sequence of occipito activities more complex than that typically reported for chromatic VEPs, including feed-forward and reentrant feedback. Results showed that chromatic human perception arises by the combined activity of at the least five parieto-occipital areas including V1, LOC, V8/VO, and the motion-sensitive dorsal region MT+. However, the contribution of V1 and V8/VO seems dominant because the re-entrant activity in these areas was present more than once (twice in V8/VO and thrice in V1). This feedforward and feedback chromatic processing appears delayed compared with the luminance processing. Associating VEPs and neuroimaging measures, we showed for the first time a complex spatiotemporal pattern of activity, confirming that chromatic stimuli produce intricate interactions of many different brain dorsal and ventral areas. © 2018 Wiley Periodicals, Inc.

  6. Mapping Urban Social Divisions

    Directory of Open Access Journals (Sweden)

    Susan Ball

    2010-05-01

    Full Text Available Against the background of increased levels of interest in space and images beyond the field of geography, this article (re- introduces earlier work on the semiotics of maps undertaken by geographers in the 1960s. The data limitations, purpose and cultural context in which a user interprets a map's codes and conventions are highlighted in this work, which remains relevant to the interpretation of maps—new and old—forty years later. By means of drawing on geography's contribution to the semiotics of maps, the article goes on to examine the concept of urban social divisions as represented in map images. Using a small number of map images, including two of the most widely known maps of urban social division in Europe and North America, the roles of context, data and purpose in the production and interpretation of maps are discussed. By presenting the examples chronologically the article shows that although advances in data collection and manipulation have allowed researchers to combine different social variables in maps of social division, and to interact with map images, work by geographers on the semiotics of maps is no less relevant today than when it was first proposed forty years ago. URN: urn:nbn:de:0114-fqs1002372

  7. Automated Box-Cox Transformations for Improved Visual Encoding.

    Science.gov (United States)

    Maciejewski, Ross; Pattath, Avin; Ko, Sungahn; Hafen, Ryan; Cleveland, William S; Ebert, David S

    2013-01-01

    The concept of preconditioning data (utilizing a power transformation as an initial step) for analysis and visualization is well established within the statistical community and is employed as part of statistical modeling and analysis. Such transformations condition the data to various inherent assumptions of statistical inference procedures, as well as making the data more symmetric and easier to visualize and interpret. In this paper, we explore the use of the Box-Cox family of power transformations to semiautomatically adjust visual parameters. We focus on time-series scaling, axis transformations, and color binning for choropleth maps. We illustrate the usage of this transformation through various examples, and discuss the value and some issues in semiautomatically using these transformations for more effective data visualization.

  8. Combining hyperspectral imagery and legacy measured soil profiles to map subsurface soil properties in a Mediterranean area (Cap-Bon, Tunisia)

    Science.gov (United States)

    Lagacherie, Philippe; Sneep, Anne-Ruth; Gomez, Cécile

    2013-04-01

    Previous studies have demonstrated that Visible Near InfraRed (Vis-NIR) Hyperspectral imagery is a cost-efficient way for mapping soil properties at fine resolutions (~5m) over large areas. However, such mapping is only feasible for soil surface since the effective penetration depths of optical sensors do not exceed several millimetres. This study aimed to extend the use of Vis-NIR hyperspectral imagery to the mapping of subsurface properties at three intervals of depth (15-30 cm, 30-60 cm and 60-100 cm) as specified by the GlobalSoilMap project. To avoid additional data collection, our basic idea was to develop an original Digital Soil Mapping approach that combines the digital maps of surface soil properties obtained from Vis-NIR hyperspectral imagery with legacy soil profiles of the region and with easily available images of DEM-derived parameters. The study was conducted in a pedologically-contrasted 300km² cultivated area located in the Cap Bon region (Northern Tunisia). AISA-Dual Vis-NIR hyperspectral airborne data were acquired over the studied area with a fine spatial resolution (5 m) and fine spectral resolution (260 spectral bands from 450 to 2500nm). Vegetated surfaces were masked to conserve only bare soil surface which represented around 50% of the study area. Three soil surface properties (clay and sand contents, Cation Exchange Capacity) were successfully mapped over the bare soils, from these data using Partial Least Square Regression models (R2 > 0.7). We used as additional data a set of images of landscape covariates derived from a 30 meter DEM and a local database of 152 legacy soil profiles from which soil properties values at the required intervals of depths were computed using an equal-area-spline algorithm. Our Digital Soil Mapping approach followed two steps: i) the development of surface-subsurface functions - linear models and random forests - that estimates subsurface property values from surface ones and landscape covariates and that

  9. IceMap250—Automatic 250 m Sea Ice Extent Mapping Using MODIS Data

    Directory of Open Access Journals (Sweden)

    Charles Gignac

    2017-01-01

    Full Text Available The sea ice cover in the North evolves at a rapid rate. To adequately monitor this evolution, tools with high temporal and spatial resolution are needed. This paper presents IceMap250, an automatic sea ice extent mapping algorithm using MODIS reflective/emissive bands. Hybrid cloud-masking using both the MOD35 mask and a visibility mask, combined with downscaling of Bands 3–7 to 250 m, are utilized to delineate sea ice extent using a decision tree approach. IceMap250 was tested on scenes from the freeze-up, stable cover, and melt seasons in the Hudson Bay complex, in Northeastern Canada. IceMap250 first product is a daily composite sea ice presence map at 250 m. Validation based on comparisons with photo-interpreted ground-truth show the ability of the algorithm to achieve high classification accuracy, with kappa values systematically over 90%. IceMap250 second product is a weekly clear sky map that provides a synthesis of 7 days of daily composite maps. This map, produced using a majority filter, makes the sea ice presence map even more accurate by filtering out the effects of isolated classification errors. The synthesis maps show spatial consistency through time when compared to passive microwave and national ice services maps.

  10. Augmented paper maps: Exploring the design space of a mixed reality system

    Science.gov (United States)

    Paelke, Volker; Sester, Monika

    Paper maps and mobile electronic devices have complementary strengths and shortcomings in outdoor use. In many scenarios, like small craft sailing or cross-country trekking, a complete replacement of maps is neither useful nor desirable. Paper maps are fail-safe, relatively cheap, offer superior resolution and provide large scale overview. In uses like open-water sailing it is therefore mandatory to carry adequate maps/charts. GPS based mobile devices, on the other hand, offer useful features like automatic positioning and plotting, real-time information update and dynamic adaptation to user requirements. While paper maps are now commonly used in combination with mobile GPS devices, there is no meaningful integration between the two, and the combined use leads to a number of interaction problems and potential safety issues. In this paper we explore the design space of augmented paper maps in which maps are augmented with additional functionality through a mobile device to achieve a meaningful integration between device and map that combines their respective strengths.

  11. Research on the Application of Rapid Surveying and Mapping for Large Scare Topographic Map by Uav Aerial Photography System

    Science.gov (United States)

    Gao, Z.; Song, Y.; Li, C.; Zeng, F.; Wang, F.

    2017-08-01

    Rapid acquisition and processing method of large scale topographic map data, which relies on the Unmanned Aerial Vehicle (UAV) low-altitude aerial photogrammetry system, is studied in this paper, elaborating the main work flow. Key technologies of UAV photograph mapping is also studied, developing a rapid mapping system based on electronic plate mapping system, thus changing the traditional mapping mode and greatly improving the efficiency of the mapping. Production test and achievement precision evaluation of Digital Orth photo Map (DOM), Digital Line Graphic (DLG) and other digital production were carried out combined with the city basic topographic map update project, which provides a new techniques for large scale rapid surveying and has obvious technical advantage and good application prospect.

  12. Mapping ionospheric observations using combined techniques for Europe region

    Science.gov (United States)

    Tomasik, Lukasz; Gulyaeva, Tamara; Stanislawska, Iwona; Swiatek, Anna; Pozoga, Mariusz; Dziak-Jankowska, Beata

    An k nearest neighbours algorithm (KNN) was used for filling the gaps of the missing F2-layer critical frequency is proposed and applied. This method uses TEC data calculated from EGNOS Vertical Delay Estimate (VDE ≈0.78 TECU) and several GNSS stations and its spatial correlation whit data from selected ionosondes. For mapping purposes two-dimensional similarity function in KNN method was proposed.

  13. Snow Cover Mapping at the Continental to Global Scale Using Combined Visible and Passive Microwave Satellite Data

    Science.gov (United States)

    Armstrong, R. L.; Brodzik, M.; Savoie, M. H.

    2007-12-01

    Over the past several decades both visible and passive microwave satellite data have been utilized for snow mapping at the continental to global scale. Snow mapping using visible data has been based primarily on the magnitude of the surface reflectance, and in more recent cases on specific spectral signatures, while microwave data can be used to identify snow cover because the microwave energy emitted by the underlying soil is scattered by the snow grains resulting in a sharp decrease in brightness temperature and a characteristic negative spectral gradient. Both passive microwave and visible data sets indicate a similar pattern of inter-annual variability, although the maximum snow extents derived from the microwave data are consistently less than those provided by the visible satellite data and the visible data typically show higher monthly variability. We describe the respective problems as well as the advantages and disadvantages of these two types of satellite data for snow cover mapping and demonstrate how a multi-sensor approach is optimal. For the period 1978 to present we combine data from the NOAA weekly snow charts with snow cover derived from the SMMR and SSM/I brightness temperature data. For the period since 2002 we blend NASA EOS MODIS and AMSR-E data sets. Our current product incorporates MODIS data from the Climate Modelers Grid (CMG) at approximately 5 km (0.05 deg.) with microwave-derived snow water equivalent (SWE) at 25 km, resulting in a blended product that includes percent snow cover in the larger grid cell whenever the microwave SWE signal is absent. Validation of AMSR-E at the brightness temperature level is provided through the comparison with data from the well-calibrated heritage SSM/I sensor over large homogeneous snow-covered surfaces (e.g. Dome C region, Antarctica). We also describe how the application of the higher frequency microwave channels (85 and 89 GHz)enhances accurate mapping of shallow and intermittent snow cover.

  14. Fractional equations of kicked systems and discrete maps

    International Nuclear Information System (INIS)

    Tarasov, Vasily E; Zaslavsky, George M

    2008-01-01

    Starting from kicked equations of motion with derivatives of non-integer orders, we obtain 'fractional' discrete maps. These maps are generalizations of well-known universal, standard, dissipative, kicked damped rotator maps. The main property of the suggested fractional maps is a long-term memory. The memory effects in the fractional discrete maps mean that their present state evolution depends on all past states with special forms of weights. These forms are represented by combinations of power-law functions

  15. Participatory mapping new data, new cartography

    CERN Document Server

    Plantin, Jean-Christophe

    2014-01-01

    This book is intended for applications of online digital mapping, called mashups (or composite application), and to analyze the mapping practices in online socio-technical controversies. The hypothesis put forward is that the ability to create an online map accompanies the formation of online audience and provides support for a position in a debate on the Web.The first part provides a study of the map: - a combination of map and statistical reason- crosses between map theories and CIS theories- recent developments in scanning the map, from Geographic Information Systems (GIS) to Web map.The second part is based on a corpus of twenty "mashup" maps, and offers a techno-semiotic analysis highlighting the "thickness of the mediation" they are in a process of communication on the Web. Map as a device to "make do" is thus replaced through these stages of creation, ranging from digital data in their viewing, before describing the construction of the map as a tool for visual evidence in public debates, and ending wit...

  16. Convergence of Hybrid Space Mapping Algorithms

    DEFF Research Database (Denmark)

    Madsen, Kaj; Søndergaard, Jacob

    2004-01-01

    may be poor, or the method may even fail to converge to a stationary point. We consider a convex combination of the space mapping technique with a classical optimization technique. The function to be optimized has the form \\$H \\$\\backslash\\$circ f\\$ where \\$H: \\$\\backslash\\$dR\\^m \\$\\backslash......\\$mapsto \\$\\backslash\\$dR\\$ is convex and \\$f: \\$\\backslash\\$dR\\^n \\$\\backslash\\$mapsto \\$\\backslash\\$dR\\^m\\$ is smooth. Experience indicates that the combined method maintains the initial efficiency of the space mapping technique. We prove that the global convergence property of the classical technique is also...

  17. The visual attention saliency map for movie retrospection

    Science.gov (United States)

    Rogalska, Anna; Napieralski, Piotr

    2018-04-01

    The visual saliency map is becoming important and challenging for many scientific disciplines (robotic systems, psychophysics, cognitive neuroscience and computer science). Map created by the model indicates possible salient regions by taking into consideration face presence and motion which is essential in motion pictures. By combining we can obtain credible saliency map with a low computational cost.

  18. Mapping Mixed Methods Research: Methods, Measures, and Meaning

    Science.gov (United States)

    Wheeldon, J.

    2010-01-01

    This article explores how concept maps and mind maps can be used as data collection tools in mixed methods research to combine the clarity of quantitative counts with the nuance of qualitative reflections. Based on more traditional mixed methods approaches, this article details how the use of pre/post concept maps can be used to design qualitative…

  19. Combining Techniques to Refine Item to Skills Q-Matrices with a Partition Tree

    Science.gov (United States)

    Desmarais, Michel C.; Xu, Peng; Beheshti, Behzad

    2015-01-01

    The problem of mapping items to skills is gaining interest with the emergence of recent techniques that can use data for both defining this mapping, and for refining mappings given by experts. We investigate the problem of refining mapping from an expert by combining the output of different techniques. The combination is based on a partition tree…

  20. Landslide susceptibility map: from research to application

    Science.gov (United States)

    Fiorucci, Federica; Reichenbach, Paola; Ardizzone, Francesca; Rossi, Mauro; Felicioni, Giulia; Antonini, Guendalina

    2014-05-01

    qualitatively classifying the territory according to slope classes. For the Perugia Municipality the susceptibility map was obtained combining results of statistical multivariate models and landslide density map. In particular, in the first phase a susceptibility zonation was prepared using different single and combined probability statistical multivariate techniques. The zonation was then combined and compared with the landslide density map in order to reclassify the false negative (portion of the territory classified by the model as stable affected by slope failures). The semi-quantitative resulting map was classified in five susceptibility classes. For each class a set of technical regulation was established to manage the territory.

  1. Methodology developed to make the Quebec indoor radon potential map

    International Nuclear Information System (INIS)

    Drolet, Jean-Philippe; Martel, Richard; Poulin, Patrick; Dessau, Jean-Claude

    2014-01-01

    This paper presents a relevant approach to predict the indoor radon potential based on the combination of the radiogeochemical data and the indoor radon measurements in the Quebec province territory (Canada). The Quebec ministry of health asked for such a map to identify the radon-prone areas to manage the risk for the population related to indoor radon exposure. Three radiogeochemical criteria including (1) equivalent uranium (eU) concentration from airborne surface gamma-ray surveys, (2) uranium concentration measurements in sediments, (3) bedrock and surficial geology were combined with 3082 basement radon concentration measurements to identify the radon-prone areas. It was shown that it is possible to determine thresholds for the three criteria that implied statistically significant different levels of radon potential using Kruskal–Wallis one way analyses of variance by ranks. The three discretized radiogeochemical datasets were combined into a total predicted radon potential that sampled 98% of the studied area. The combination process was also based on Kruskal–Wallis one way ANOVA. Four statistically significant different predicted radon potential levels were created: low, medium, high and very high. Respectively 10 and 13% of the dwellings exceed the Canadian radon guideline of 200 Bq/m 3 in low and medium predicted radon potentials. These proportions rise up to 22 and 45% respectively for high and very high predicted radon potentials. This predictive map of indoor radon potential based on the radiogeochemical data was validated using a map of confirmed radon exposure in homes based on the basement radon measurements. It was shown that the map of predicted radon potential based on the radiogeochemical data was reliable to identify radon-prone areas even in zones where no indoor radon measurement exists. - Highlights: • 5 radiogeochemical datasets were used to map the geogenic indoor radon potential. • An indoor radon potential was determined for each

  2. The visual attention saliency map for movie retrospection

    Directory of Open Access Journals (Sweden)

    Rogalska Anna

    2018-04-01

    Full Text Available The visual saliency map is becoming important and challenging for many scientific disciplines (robotic systems, psychophysics, cognitive neuroscience and computer science. Map created by the model indicates possible salient regions by taking into consideration face presence and motion which is essential in motion pictures. By combining we can obtain credible saliency map with a low computational cost.

  3. An Efficient Strategy Combining SSR Markers- and Advanced QTL-seq-driven QTL Mapping Unravels Candidate Genes Regulating Grain Weight in Rice.

    Science.gov (United States)

    Daware, Anurag; Das, Sweta; Srivastava, Rishi; Badoni, Saurabh; Singh, Ashok K; Agarwal, Pinky; Parida, Swarup K; Tyagi, Akhilesh K

    2016-01-01

    Development and use of genome-wide informative simple sequence repeat (SSR) markers and novel integrated genomic strategies are vital to drive genomics-assisted breeding applications and for efficient dissection of quantitative trait loci (QTLs) underlying complex traits in rice. The present study developed 6244 genome-wide informative SSR markers exhibiting in silico fragment length polymorphism based on repeat-unit variations among genomic sequences of 11 indica, japonica, aus , and wild rice accessions. These markers were mapped on diverse coding and non-coding sequence components of known cloned/candidate genes annotated from 12 chromosomes and revealed a much higher amplification (97%) and polymorphic potential (88%) along with wider genetic/functional diversity level (16-74% with a mean 53%) especially among accessions belonging to indica cultivar group, suggesting their utility in large-scale genomics-assisted breeding applications in rice. A high-density 3791 SSR markers-anchored genetic linkage map (IR 64 × Sonasal) spanning 2060 cM total map-length with an average inter-marker distance of 0.54 cM was generated. This reference genetic map identified six major genomic regions harboring robust QTLs (31% combined phenotypic variation explained with a 5.7-8.7 LOD) governing grain weight on six rice chromosomes. One strong grain weight major QTL region ( OsqGW5.1 ) was narrowed-down by integrating traditional QTL mapping with high-resolution QTL region-specific integrated SSR and single nucleotide polymorphism markers-based QTL-seq analysis and differential expression profiling. This led us to delineate two natural allelic variants in two known cis -regulatory elements (RAV1AAT and CARGCW8GAT) of glycosyl hydrolase and serine carboxypeptidase genes exhibiting pronounced seed-specific differential regulation in low (Sonasal) and high (IR 64) grain weight mapping parental accessions. Our genome-wide SSR marker resource (polymorphic within/between diverse

  4. Mapping post-fire forest regeneration and vegetation recovery using a combination of very high spatial resolution and hyperspectral satellite imagery

    Science.gov (United States)

    Mitri, George H.; Gitas, Ioannis Z.

    2013-02-01

    Careful evaluation of forest regeneration and vegetation recovery after a fire event provides vital information useful in land management. The use of remotely sensed data is considered to be especially suitable for monitoring ecosystem dynamics after fire. The aim of this work was to map post-fire forest regeneration and vegetation recovery on the Mediterranean island of Thasos by using a combination of very high spatial (VHS) resolution (QuickBird) and hyperspectral (EO-1 Hyperion) imagery and by employing object-based image analysis. More specifically, the work focused on (1) the separation and mapping of three major post-fire classes (forest regeneration, other vegetation recovery, unburned vegetation) existing within the fire perimeter, and (2) the differentiation and mapping of the two main forest regeneration classes, namely, Pinus brutia regeneration, and Pinus nigra regeneration. The data used in this study consisted of satellite images and field observations of homogeneous regenerated and revegetated areas. The methodology followed two main steps: a three-level image segmentation, and, a classification of the segmented images. The process resulted in the separation of classes related to the aforementioned objectives. The overall accuracy assessment revealed very promising results (approximately 83.7% overall accuracy, with a Kappa Index of Agreement of 0.79). The achieved accuracy was 8% higher when compared to the results reported in a previous work in which only the EO-1 Hyperion image was employed in order to map the same classes. Some classification confusions involving the classes of P. brutia regeneration and P. nigra regeneration were observed. This could be attributed to the absence of large and dense homogeneous areas of regenerated pine trees in the study area.

  5. Combining 3D structure of real video and synthetic objects

    Science.gov (United States)

    Kim, Man-Bae; Song, Mun-Sup; Kim, Do-Kyoon

    1998-04-01

    This paper presents a new approach of combining real video and synthetic objects. The purpose of this work is to use the proposed technology in the fields of advanced animation, virtual reality, games, and so forth. Computer graphics has been used in the fields previously mentioned. Recently, some applications have added real video to graphic scenes for the purpose of augmenting the realism that the computer graphics lacks in. This approach called augmented or mixed reality can produce more realistic environment that the entire use of computer graphics. Our approach differs from the virtual reality and augmented reality in the manner that computer- generated graphic objects are combined to 3D structure extracted from monocular image sequences. The extraction of the 3D structure requires the estimation of 3D depth followed by the construction of a height map. Graphic objects are then combined to the height map. The realization of our proposed approach is carried out in the following steps: (1) We derive 3D structure from test image sequences. The extraction of the 3D structure requires the estimation of depth and the construction of a height map. Due to the contents of the test sequence, the height map represents the 3D structure. (2) The height map is modeled by Delaunay triangulation or Bezier surface and each planar surface is texture-mapped. (3) Finally, graphic objects are combined to the height map. Because 3D structure of the height map is already known, Step (3) is easily manipulated. Following this procedure, we produced an animation video demonstrating the combination of the 3D structure and graphic models. Users can navigate the realistic 3D world whose associated image is rendered on the display monitor.

  6. Distribution characteristics of Shihongtan uranium deposits calcareous sandstone and discussion on their genesis

    International Nuclear Information System (INIS)

    Zhu Huanqiao; Jia Heng; Xu Gaozhong; Li Zhanyou

    2007-12-01

    It is considered that the calcareous sandstone appear at layer along of a bunch of pear lens on and off, localled near up and down surface of sandbody or washed surface, has sandstone of more macro-grain and more gradation through statistics and analysis of calcareous sandstone in goal layer in Shihongtan uranium deposits. The calcareous sandstone accumulation thickness chorogram demonstrated that the calcareous sandstone centralized distribution in the ore body growth area, thus it can be seen, in the oxidation reduction intermediate belt the calcareous sandstone forms with the uranium mine has the certain origin relation. Choropleth map of summed thickness of calcareous sandstone deserves that it mainly appear in area of uranium body and related cause of formation of ore body of interlayer deacidizing--oxidation belt. (authors)

  7. [Spatial analysis of autumn-winter type scrub typhus in Shandong province, 2006-2014].

    Science.gov (United States)

    Yang, H; Bi, Z W; Kou, Z Q; Zheng, L; Zhao, Z T

    2016-05-01

    To discuss the spatial-temporal distribution and epidemic trends of autumn-winter type scrub typhus in Shandong province, and provide scientific evidence for further study for the prevention and control of the disease. The scrub typhus surveillance data during 2006-2014 were collected from Shandong Disease Reporting Information System. The data was analyzed by using software ArcGIS 9.3(ESRI Inc., Redlands, CA, USA), GeoDa 0.9.5-i and SatScan 9.1.1. The Moran' s I, log-likelihood ratio(LLR), relative risk(RR)were calculated and the incidence choropleth maps, local indicators of spatial autocorrelation cluster maps and space scaning cluster maps were drawn. A total of 4 453 scrub typhus cases were reported during 2006-2014, and the annual incidence increased with year. Among the 17 prefectures(municipality)in Shandong, 13 were affected by scrub typhus. The global Moran's I index was 0.501 5(Pscrub typhus in Shandong. Since 2006, the epidemic area of the disease has expanded and the number of high-risk areas has increased. Moreover, the eastward moving and periodically expanding trends of high-risk clusters were detected.

  8. Sea-Ice Feature Mapping using JERS-1 Imagery

    Science.gov (United States)

    Maslanik, James; Heinrichs, John

    1994-01-01

    JERS-1 SAR and OPS imagery are examined in combination with other data sets to investigate the utility of the JERS-1 sensors for mapping fine-scale sea ice conditions. Combining ERS-1 C band and JERS-1 L band SAR aids in discriminating multiyear and first-year ice. Analysis of OPS imagery for a field site in the Canadian Archipelago highlights the advantages of OPS's high spatial and spectral resolution for mapping ice structure, melt pond distribution, and surface albedo.

  9. On the downscaling of actual evapotranspiration maps based on combination of MODIS and landsat-based actual evapotranspiration estimates

    Science.gov (United States)

    Singh, Ramesh K.; Senay, Gabriel B.; Velpuri, Naga Manohar; Bohms, Stefanie; Verdin, James P.

    2014-01-01

     Downscaling is one of the important ways of utilizing the combined benefits of the high temporal resolution of Moderate Resolution Imaging Spectroradiometer (MODIS) images and fine spatial resolution of Landsat images. We have evaluated the output regression with intercept method and developed the Linear with Zero Intercept (LinZI) method for downscaling MODIS-based monthly actual evapotranspiration (AET) maps to the Landsat-scale monthly AET maps for the Colorado River Basin for 2010. We used the 8-day MODIS land surface temperature product (MOD11A2) and 328 cloud-free Landsat images for computing AET maps and downscaling. The regression with intercept method does have limitations in downscaling if the slope and intercept are computed over a large area. A good agreement was obtained between downscaled monthly AET using the LinZI method and the eddy covariance measurements from seven flux sites within the Colorado River Basin. The mean bias ranged from −16 mm (underestimation) to 22 mm (overestimation) per month, and the coefficient of determination varied from 0.52 to 0.88. Some discrepancies between measured and downscaled monthly AET at two flux sites were found to be due to the prevailing flux footprint. A reasonable comparison was also obtained between downscaled monthly AET using LinZI method and the gridded FLUXNET dataset. The downscaled monthly AET nicely captured the temporal variation in sampled land cover classes. The proposed LinZI method can be used at finer temporal resolution (such as 8 days) with further evaluation. The proposed downscaling method will be very useful in advancing the application of remotely sensed images in water resources planning and management.

  10. Influence of contact force on voltage mapping: A combined magnetic resonance imaging and electroanatomic mapping study in patients with tetralogy of Fallot.

    Science.gov (United States)

    Teijeira-Fernandez, Elvis; Cochet, Hubert; Bourier, Felix; Takigawa, Masateru; Cheniti, Ghassen; Thompson, Nathaniel; Frontera, Antonio; Camaioni, Claudia; Massouille, Gregoire; Jalal, Zakaria; Derval, Nicolas; Iriart, Xavier; Denis, Arnaud; Hocini, Meleze; Haissaguerre, Michel; Jais, Pierre; Thambo, Jean-Benoit; Sacher, Frederic

    2018-03-20

    Voltage criteria for ventricular mapping have been obtained from small series of patients and prioritizing high specificity. The purpose of this study was to analyse the potential influence of contact force (CF) on voltage mapping and to define voltage cutoff values for right ventricular (RV) scar using the tetralogy of Fallot as a model of transmural RV scar and magnetic resonance imaging (MRI) as reference. Fourteen patients (age 32.6 ± 14.3 years; 5 female) with repaired tetralogy of Fallot underwent high-resolution cardiac MRI (1.25 × 1.25 × 2.5 mm). Scar, defined as pixels with intensity >50% maximum, was mapped over the RV geometry and merged within the CARTO system to RV endocardial voltage maps acquired using a 3.5-mm ablation catheter with CF technology (SmartTouch, Biosense Webster). In total, 2446 points were analyzed, 915 within scars and 1531 in healthy tissue according to MRI. CF correlated to unipolar (ρ = 0.186; P voltage in healthy tissue (ρ = 0.245; P voltage cutoffs of 5.19 mV for unipolar voltage and 1.76 mV for bipolar voltage, yielding sensitivity/specificity of 0.89/0.85 and 0.9/0.9, respectively. CF is an important factor to be taken into account for voltage mapping. If good CF is applied, unipolar and bipolar voltage cutoffs of 5.19 mV and 1.76 mV are optimal for identifying RV scar on endocardial mapping with the SmartTouch catheter. Data on the diagnostic accuracy of different voltage cutoff values are provided. Copyright © 2018 Heart Rhythm Society. Published by Elsevier Inc. All rights reserved.

  11. Attenuated total reflection-Fourier transform infrared imaging of large areas using inverted prism crystals and combining imaging and mapping.

    Science.gov (United States)

    Chan, K L Andrew; Kazarian, Sergei G

    2008-10-01

    Attenuated total reflection-Fourier transform infrared (ATR-FT-IR) imaging is a very useful tool for capturing chemical images of various materials due to the simple sample preparation and the ability to measure wet samples or samples in an aqueous environment. However, the size of the array detector used for image acquisition is often limited and there is usually a trade off between spatial resolution and the field of view (FOV). The combination of mapping and imaging can be used to acquire images with a larger FOV without sacrificing spatial resolution. Previous attempts have demonstrated this using an infrared microscope and a Germanium hemispherical ATR crystal to achieve images of up to 2.5 mm x 2.5 mm but with varying spatial resolution and depth of penetration across the imaged area. In this paper, we demonstrate a combination of mapping and imaging with a different approach using an external optics housing for large ATR accessories and inverted ATR prisms to achieve ATR-FT-IR images with a large FOV and reasonable spatial resolution. The results have shown that a FOV of 10 mm x 14 mm can be obtained with a spatial resolution of approximately 40-60 microm when using an accessory that gives no magnification. A FOV of 1.3 mm x 1.3 mm can be obtained with spatial resolution of approximately 15-20 microm when using a diamond ATR imaging accessory with 4x magnification. No significant change in image quality such as spatial resolution or depth of penetration has been observed across the whole FOV with this method and the measurement time was approximately 15 minutes for an image consisting of 16 image tiles.

  12. Case studies combined with or without concept maps improve critical thinking in hospital-based nurses: a randomized-controlled trial.

    Science.gov (United States)

    Huang, Yu-Chuan; Chen, Hsing-Hsia; Yeh, Mei-Ling; Chung, Yu-Chu

    2012-06-01

    Critical thinking (CT) is essential to the exercise of professional judgment. As nurses face increasingly complex health-care situations, critical thinking can promote appropriate clinical decision-making and improve the quality of nursing care. This study aimed to evaluate the effects of a program of case studies, alone (CS) or combined with concept maps (CSCM), on improving CT in clinical nurses. The study was a randomized controlled trial. The experimental group participated in a 16-week CSCM program, whereas the control group participated in a CS program of equal duration. A randomized-controlled trial with a multistage randomization process was used to select and to assign participants, ultimately resulting in 67 nurses in each group. Data were collected before and after the program using the California Critical Thinking Skill Test (CCTST) and the California Critical Thinking Disposition Inventory (CCTDI). After the programs, there were significant differences between the two groups in the critical thinking skills of analysis, evaluation, inference, deduction, and induction. There was also an overall significant difference, and a significant difference in the specific disposition of open-mindedness. This study supports the application of case studies combined with concept maps as a hospital-based teaching strategy to promote development of critical thinking skills and encourage dispositions for nurses. The CSCM resulted in greater improvements in all critical thinking skills of as well as the overall and open-minded affective dispositions toward critical thinking, compared with the case studies alone. An obvious improvement in the CSCM participants was the analytic skill and disposition. Further longitudinal studies and data collection from multisite evaluations in a range of geographic locales are warranted. Copyright © 2012 Elsevier Ltd. All rights reserved.

  13. Combining pixel and object based image analysis of ultra-high resolution multibeam bathymetry and backscatter for habitat mapping in shallow marine waters

    Science.gov (United States)

    Ierodiaconou, Daniel; Schimel, Alexandre C. G.; Kennedy, David; Monk, Jacquomo; Gaylard, Grace; Young, Mary; Diesing, Markus; Rattray, Alex

    2018-06-01

    Habitat mapping data are increasingly being recognised for their importance in underpinning marine spatial planning. The ability to collect ultra-high resolution (cm) multibeam echosounder (MBES) data in shallow waters has facilitated understanding of the fine-scale distribution of benthic habitats in these areas that are often prone to human disturbance. Developing quantitative and objective approaches to integrate MBES data with ground observations for predictive modelling is essential for ensuring repeatability and providing confidence measures for habitat mapping products. Whilst supervised classification approaches are becoming more common, users are often faced with a decision whether to implement a pixel based (PB) or an object based (OB) image analysis approach, with often limited understanding of the potential influence of that decision on final map products and relative importance of data inputs to patterns observed. In this study, we apply an ensemble learning approach capable of integrating PB and OB Image Analysis from ultra-high resolution MBES bathymetry and backscatter data for mapping benthic habitats in Refuge Cove, a temperate coastal embayment in south-east Australia. We demonstrate the relative importance of PB and OB seafloor derivatives for the five broad benthic habitats that dominate the site. We found that OB and PB approaches performed well with differences in classification accuracy but not discernible statistically. However, a model incorporating elements of both approaches proved to be significantly more accurate than OB or PB methods alone and demonstrate the benefits of using MBES bathymetry and backscatter combined for class discrimination.

  14. Single-edition quadrangle maps

    Science.gov (United States)

    ,

    1998-01-01

    In August 1993, the U.S. Geological Survey's (USGS) National Mapping Division and the U.S. Department of Agriculture's Forest Service signed an Interagency Agreement to begin a single-edition joint mapping program. This agreement established the coordination for producing and maintaining single-edition primary series topographic maps for quadrangles containing National Forest System lands. The joint mapping program saves money by eliminating duplication of effort by the agencies and results in a more frequent revision cycle for quadrangles containing national forests. Maps are revised on the basis of jointly developed standards and contain normal features mapped by the USGS, as well as additional features required for efficient management of National Forest System lands. Single-edition maps look slightly different but meet the content, accuracy, and quality criteria of other USGS products. The Forest Service is responsible for the land management of more than 191 million acres of land throughout the continental United States, Alaska, and Puerto Rico, including 155 national forests and 20 national grasslands. These areas make up the National Forest System lands and comprise more than 10,600 of the 56,000 primary series 7.5-minute quadrangle maps (15-minute in Alaska) covering the United States. The Forest Service has assumed responsibility for maintaining these maps, and the USGS remains responsible for printing and distributing them. Before the agreement, both agencies published similar maps of the same areas. The maps were used for different purposes, but had comparable types of features that were revised at different times. Now, the two products have been combined into one so that the revision cycle is stabilized and only one agency revises the maps, thus increasing the number of current maps available for National Forest System lands. This agreement has improved service to the public by requiring that the agencies share the same maps and that the maps meet a

  15. Exome Sequencing Identifies a Novel MAP3K14 Mutation in Recessive Atypical Combined Immunodeficiency

    Directory of Open Access Journals (Sweden)

    Nikola Schlechter

    2017-11-01

    Full Text Available Primary immunodeficiency disorders (PIDs render patients vulnerable to infection with a wide range of microorganisms and thus provide good in vivo models for the assessment of immune responses during infectious challenges. Priming of the immune system, especially in infancy, depends on different environmental exposures and medical practices. This may determine the timing and phenotype of clinical appearance of immune deficits as exemplified with early exposure to Bacillus Calmette-Guérin (BCG vaccination and dissemination in combined immunodeficiencies. Varied phenotype expression poses a challenge to identification of the putative immune deficit. Without the availability of genomic diagnosis and data analysis resources and with limited capacity for functional definition of immune pathways, it is difficult to establish a definitive diagnosis and to decide on appropriate treatment. This study describes the use of exome sequencing to identify a homozygous recessive variant in MAP3K14, NIKVal345Met, in a patient with combined immunodeficiency, disseminated BCG-osis, and paradoxically elevated lymphocytes. Laboratory testing confirmed hypogammaglobulinemia with normal CD19, but failed to confirm a definitive diagnosis for targeted treatment decisions. NIKVal345Met is predicted to be deleterious and pathogenic by two in silico prediction tools and is situated in a gene crucial for effective functioning of the non-canonical nuclear factor-kappa B signaling pathway. Functional analysis of NIKVal345Met- versus NIKWT-transfected human embryonic kidney-293T cells showed that this mutation significantly affects the kinase activity of NIK leading to decreased levels of phosphorylated IkappaB kinase-alpha (IKKα, the target of NIK. BCG-stimulated RAW264.7 cells transfected with NIKVal345Met also presented with reduced levels of phosphorylated IKKα, significantly increased p100 levels and significantly decreased p52 levels compared to cells transfected

  16. Arterial mapping of lower limbs

    International Nuclear Information System (INIS)

    Acuna Allen, Rafael

    2011-01-01

    A bibliographic review is realized in the arterial mapping of lower limbs by ultrasonographic. The physical properties of the Doppler effect applied to diagnostic ultrasound are described. The anatomical characteristics of the general arterial system and specifically of the lower limbs arterial system are mentioned. Pathologies of the ischemic arterial disease of lower limbs are explained. The study characteristics of lower limbs arterial mapping are documented to determine its importance as appropriate method for the assessment of lower limb ischemia. An adequate arterial mapping of lower limbs is recognized in atherosclerotic ischemic disease as a reliable initial method alternative to arteriography. Arteriography is considered as reference pattern for therapeutic decision making in patients with critical ischemia of the lower limbs. Non-invasive methods to assess the arterial system of lower limbs has evidenced the advantages of the arterial mapping with Doppler, according to the consulted literature. The combination morphological and hemodynamic information has been possible and a map of the explored zone is made. The arterial mapping by ultrasonography has offered similar reliability to angiography [es

  17. QTL mapping for combining ability in different population-based ...

    Indian Academy of Sciences (India)

    2013-12-13

    Dec 13, 2013 ... ability and for geneticists to research the genetic basis of combining ability. [Li L., Sun C., ... population-based NCII designs by a simulation study. J. Genet. ... combining ability could also be applied to other population- based NCII ... was to estimate how different base populations, sample sizes, heritability ...

  18. Passive mapping and intermittent exploration for mobile robots

    Science.gov (United States)

    Engleson, Sean P.

    1994-01-01

    An adaptive state space architecture is combined with diktiometric representation to provide the framework for designing a robot mapping system with flexible navigation planning tasks. This involves indexing waypoints described as expectations, geometric indexing, and perceptual indexing. Matching and updating the robot's projected position and sensory inputs with indexing waypoints involves matchers, dynamic priorities, transients, and waypoint restructuring. The robot's map learning can be opganized around the principles of passive mapping.

  19. Hybrid Message-Embedded Cipher Using Logistic Map

    OpenAIRE

    Mishra, Mina; Mankar, V. H.

    2012-01-01

    The proposed hybrid message embedded scheme consists of hill cipher combined with message embedded chaotic scheme. Message-embedded scheme using non-linear feedback shift register as non-linear function and 1-D logistic map as chaotic map is modified, analyzed and tested for avalanche property and strength against known plaintext attack and brute-force attack. Parameter of logistic map acts as a secret key. As we know that the minimum key space to resist brute-force attack is 2100, and it is ...

  20. A consensus linkage map of the chicken genome

    NARCIS (Netherlands)

    Groenen, M.A.M.; Cheng, H.H.; Bumstead, N.; Benkel, B.; Briles, E.; Burt, D.W.; Burke, T.; Dodgson, J.; Hillel, J.; Lamont, S.; Ponce, de F.A.; Soller, M.

    2000-01-01

    A consensus linkage map has been developed in the chicken that combines all of the genotyping data from the three available chicken mapping populations. Genotyping data were contributed by the laboratories that have been using the East Lansing and Compton reference populations and from the Animal

  1. Saturation of an intra-gene pool linkage map: towards a unified consensus linkage map for fine mapping and synteny analysis in common bean.

    Science.gov (United States)

    Galeano, Carlos H; Fernandez, Andrea C; Franco-Herrera, Natalia; Cichy, Karen A; McClean, Phillip E; Vanderleyden, Jos; Blair, Matthew W

    2011-01-01

    Map-based cloning and fine mapping to find genes of interest and marker assisted selection (MAS) requires good genetic maps with reproducible markers. In this study, we saturated the linkage map of the intra-gene pool population of common bean DOR364 × BAT477 (DB) by evaluating 2,706 molecular markers including SSR, SNP, and gene-based markers. On average the polymorphism rate was 7.7% due to the narrow genetic base between the parents. The DB linkage map consisted of 291 markers with a total map length of 1,788 cM. A consensus map was built using the core mapping populations derived from inter-gene pool crosses: DOR364 × G19833 (DG) and BAT93 × JALO EEP558 (BJ). The consensus map consisted of a total of 1,010 markers mapped, with a total map length of 2,041 cM across 11 linkage groups. On average, each linkage group on the consensus map contained 91 markers of which 83% were single copy markers. Finally, a synteny analysis was carried out using our highly saturated consensus maps compared with the soybean pseudo-chromosome assembly. A total of 772 marker sequences were compared with the soybean genome. A total of 44 syntenic blocks were identified. The linkage group Pv6 presented the most diverse pattern of synteny with seven syntenic blocks, and Pv9 showed the most consistent relations with soybean with just two syntenic blocks. Additionally, a co-linear analysis using common bean transcript map information against soybean coding sequences (CDS) revealed the relationship with 787 soybean genes. The common bean consensus map has allowed us to map a larger number of markers, to obtain a more complete coverage of the common bean genome. Our results, combined with synteny relationships provide tools to increase marker density in selected genomic regions to identify closely linked polymorphic markers for indirect selection, fine mapping or for positional cloning.

  2. The National Map - Orthoimagery

    Science.gov (United States)

    Mauck, James; Brown, Kim; Carswell, William J.

    2009-01-01

    Orthorectified digital aerial photographs and satellite images of 1-meter (m) pixel resolution or finer make up the orthoimagery component of The National Map. The process of orthorectification removes feature displacements and scale variations caused by terrain relief and sensor geometry. The result is a combination of the image characteristics of an aerial photograph or satellite image and the geometric qualities of a map. These attributes allow users to: *Measure distance *Calculate areas *Determine shapes of features *Calculate directions *Determine accurate coordinates *Determine land cover and use *Perform change detection *Update maps The standard digital orthoimage is a 1-m or finer resolution, natural color or color infra-red product. Most are now produced as GeoTIFFs and accompanied by a Federal Geographic Data Committee (FGDC)-compliant metadata file. The primary source for 1-m data is the National Agriculture Imagery Program (NAIP) leaf-on imagery. The U.S. Geological Survey (USGS) utilizes NAIP imagery as the image layer on its 'Digital- Map' - a new generation of USGS topographic maps (http://nationalmap.gov/digital_map). However, many Federal, State, and local governments and organizations require finer resolutions to meet a myriad of needs. Most of these images are leaf-off, natural-color products at resolutions of 1-foot (ft) or finer.

  3. Preliminary genetic linkage map of Miscanthus sinensis with RAPD markers

    NARCIS (Netherlands)

    Atienza, S.G.; Satovic, Z.; Petersen, K.K.; Dolstra, O.; Martin, A.

    2002-01-01

    We have used an "offspring cross" mapping strategy in combination with the random amplified polymorphic DNA (RAPD) assay to construct the first genetic map of the species Miscanthus sinensis (2n = 2x = 38). This map is based on an outbred population of 89 individuals resulting from the cross between

  4. Methodology developed to make the Quebec indoor radon potential map

    Energy Technology Data Exchange (ETDEWEB)

    Drolet, Jean-Philippe, E-mail: jean-philippe.drolet@ete.inrs.ca [Institut national de la recherche scientifique, Eau Terre Environnement Research Centre (ETE-INRS), 490 de la Couronne, G1K 9A9 Quebec (Canada); Martel, Richard [Institut national de la recherche scientifique, Eau Terre Environnement Research Centre (ETE-INRS), 490 de la Couronne, G1K 9A9 Quebec (Canada); Poulin, Patrick [Institut national de santé publique du Québec (INSPQ), 945 avenue Wolfe, G1V 5B3 Quebec (Canada); Dessau, Jean-Claude [Agence de la santé et des services sociaux des Laurentides, 1000 rue Labelle, J7Z 5 N6 Saint-Jérome (Canada)

    2014-03-01

    This paper presents a relevant approach to predict the indoor radon potential based on the combination of the radiogeochemical data and the indoor radon measurements in the Quebec province territory (Canada). The Quebec ministry of health asked for such a map to identify the radon-prone areas to manage the risk for the population related to indoor radon exposure. Three radiogeochemical criteria including (1) equivalent uranium (eU) concentration from airborne surface gamma-ray surveys, (2) uranium concentration measurements in sediments, (3) bedrock and surficial geology were combined with 3082 basement radon concentration measurements to identify the radon-prone areas. It was shown that it is possible to determine thresholds for the three criteria that implied statistically significant different levels of radon potential using Kruskal–Wallis one way analyses of variance by ranks. The three discretized radiogeochemical datasets were combined into a total predicted radon potential that sampled 98% of the studied area. The combination process was also based on Kruskal–Wallis one way ANOVA. Four statistically significant different predicted radon potential levels were created: low, medium, high and very high. Respectively 10 and 13% of the dwellings exceed the Canadian radon guideline of 200 Bq/m{sup 3} in low and medium predicted radon potentials. These proportions rise up to 22 and 45% respectively for high and very high predicted radon potentials. This predictive map of indoor radon potential based on the radiogeochemical data was validated using a map of confirmed radon exposure in homes based on the basement radon measurements. It was shown that the map of predicted radon potential based on the radiogeochemical data was reliable to identify radon-prone areas even in zones where no indoor radon measurement exists. - Highlights: • 5 radiogeochemical datasets were used to map the geogenic indoor radon potential. • An indoor radon potential was determined for

  5. A scalable hybrid multi-robot SLAM method for highly detailed maps

    NARCIS (Netherlands)

    Pfingsthorn, M.; Slamet, B.; Visser, A.

    2008-01-01

    Recent successful SLAM methods employ hybrid map representations combining the strengths of topological maps and occupancy grids. Such representations often facilitate multi-agent mapping. In this paper, a successful SLAM method is presented, which is inspired by the manifold data structure by

  6. Northeast Puerto Rico and Culebra Island - Benthic Habitat Map 2015

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — This benthic habitat map was created from a semi-automated habitat mapping process, using a combination of bathymetry, satellite imagery, aerial imagery and...

  7. An Alternative Approach to Mapping Thermophysical Units from Martian Thermal Inertia and Albedo Data Using a Combination of Unsupervised Classification Techniques

    Directory of Open Access Journals (Sweden)

    Eriita Jones

    2014-06-01

    Full Text Available Thermal inertia and albedo provide information on the distribution of surface materials on Mars. These parameters have been mapped globally on Mars by the Thermal Emission Spectrometer (TES onboard the Mars Global Surveyor. Two-dimensional clusters of thermal inertia and albedo reflect the thermophysical attributes of the dominant materials on the surface. In this paper three automated, non-deterministic, algorithmic classification methods are employed for defining thermophysical units: Expectation Maximisation of a Gaussian Mixture Model; Iterative Self-Organizing Data Analysis Technique (ISODATA; and Maximum Likelihood. We analyse the behaviour of the thermophysical classes resulting from the three classifiers, operating on the 2007 TES thermal inertia and albedo datasets. Producing a rigorous mapping of thermophysical classes at ~3 km/pixel resolution remains important for constraining the geologic processes that have shaped the Martian surface on a regional scale, and for choosing appropriate landing sites. The results from applying these algorithms are compared to geologic maps, surface data from lander missions, features derived from imaging, and previous classifications of thermophysical units which utilized manual (and potentially more time consuming classification methods. These comparisons comprise data suitable for validation of our classifications. Our work shows that a combination of the algorithms—ISODATA and Maximum Likelihood—optimises the sensitivity to the underlying dataspace, and that new information on Martian surface materials can be obtained by using these methods. We demonstrate that the algorithms used here can be applied to define a finer partitioning of albedo and thermal inertia for a more detailed mapping of surface materials, grain sizes and thermal behaviour of the Martian surface and shallow subsurface, at the ~3 km scale.

  8. Engineering Applications Using Probabilistic Aftershock Hazard Analyses: Aftershock Hazard Map and Load Combination of Aftershocks and Tsunamis

    Directory of Open Access Journals (Sweden)

    Byunghyun Choi

    2017-12-01

    Full Text Available After the Tohoku earthquake in 2011, we observed that aftershocks tended to occur in a wide region after such a large earthquake. These aftershocks resulted in secondary damage or delayed rescue and recovery activities. In addition, it has been reported that there are regions where the intensity of the vibrations owing to the aftershocks was much stronger than those associated with the main shock. Therefore, it is necessary to consider the seismic risk associated with aftershocks. We used the data regarding aftershocks that was obtained from the Tohoku earthquake and various other historically large earthquakes. We investigated the spatial and temporal distribution of the aftershocks using the Gutenberg–Richter law and the modified Omori law. Subsequently, we previously proposed a probabilistic aftershock occurrence model that is expected to be useful to develop plans for recovery activities after future large earthquakes. In this study, the probabilistic aftershock hazard analysis is used to create aftershock hazard maps. We propose a hazard map focusing on the probability of aftershocks on the scale of the main shock for use with a recovery activity plan. Following the lessons learned from the 2011 Tohoku earthquake, we focus on the simultaneous occurrence of tsunamis and aftershocks just after a great subduction earthquake. The probabilistic aftershock hazard analysis is used to derive load combination equations of the load and resistance factor design. This design is intended to simultaneously consider tsunamis and aftershocks for tsunami-resistant designs of tsunami evacuation buildings.

  9. Graphene Conductance Uniformity Mapping

    DEFF Research Database (Denmark)

    Buron, Jonas Christian Due; Petersen, Dirch Hjorth; Bøggild, Peter

    2012-01-01

    We demonstrate a combination of micro four-point probe (M4PP) and non-contact terahertz time-domain spectroscopy (THz-TDS) measurements for centimeter scale quantitative mapping of the sheet conductance of large area chemical vapor deposited graphene films. Dual configuration M4PP measurements......, demonstrated on graphene for the first time, provide valuable statistical insight into the influence of microscale defects on the conductance, while THz-TDS has potential as a fast, non-contact metrology method for mapping of the spatially averaged nanoscopic conductance on wafer-scale graphene with scan times......, dominating the microscale conductance of the investigated graphene film....

  10. A time-delayed method for controlling chaotic maps

    International Nuclear Information System (INIS)

    Chen Maoyin; Zhou Donghua; Shang Yun

    2005-01-01

    Combining the repetitive learning strategy and the optimality principle, this Letter proposes a time-delayed method to control chaotic maps. This method can effectively stabilize unstable periodic orbits within chaotic attractors in the sense of least mean square. Numerical simulations of some chaotic maps verify the effectiveness of this method

  11. Improving maps of ice-sheet surface elevation change using combined laser altimeter and stereoscopic elevation model data

    DEFF Research Database (Denmark)

    Fredenslund Levinsen, Joanna; Howat, I. M.; Tscherning, C. C.

    2013-01-01

    We combine the complementary characteristics of laser altimeter data and stereoscopic digital elevation models (DEMs) to construct high-resolution (_100 m) maps of surface elevations and elevation changes over rapidly changing outlet glaciers in Greenland. Measurements from spaceborne and airborne...... laser altimeters have relatively low errors but are spatially limited to the ground tracks, while DEMs have larger errors but provide spatially continuous surfaces. The principle of our method is to fit the DEM surface to the altimeter point clouds in time and space to minimize the DEM errors and use...... that surface to extrapolate elevations away from altimeter flight lines. This reduces the DEM registration errors and fills the gap between the altimeter paths. We use data from ICESat and ATM as well as SPOT 5 DEMs from 2007 and 2008 and apply them to the outlet glaciers Jakobshavn Isbræ (JI...

  12. Linkage analysis by genotyping of sibling populations: a genetic map for the potato cyst nematode constructed using a "pseudo-F2" mapping strategy.

    Science.gov (United States)

    Rouppe van der Voort, J N; van Eck, H J; van Zandvoort, P M; Overmars, H; Helder, J; Bakker, J

    1999-07-01

    A mapping strategy is described for the construction of a linkage map of a non-inbred species in which individual offspring genotypes are not amenable to marker analysis. After one extra generation of random mating, the segregating progeny was propagated, and bulked populations of offspring were analyzed. Although the resulting population structure is different from that of commonly used mapping populations, we show that the maximum likelihood formula for a normal F2 is applicable for the estimation of recombination. This "pseudo-F2" mapping strategy, in combination with the development of an AFLP assay for single cysts, facilitated the construction of a linkage map for the potato cyst nematode Globodera rostochiensis. Using 12 pre-selected AFLP primer combinations, a total of 66 segregating markers were identified, 62 of which were mapped to nine linkage groups. These 62 AFLP markers are randomly distributed and cover about 65% of the genome. An estimate of the physical size of the Globodera genome was obtained from comparisons of the number of AFLP fragments obtained with the values for Caenorhabditis elegans. The methodology presented here resulted in the first genomic map for a cyst nematode. The low value of the kilobase/centimorgan (kb/cM) ratio for the Globodera genome will facilitate map-based cloning of genes that mediate the interaction between the nematode and its host plant.

  13. Geological Mapping of Sabah, Malaysia, Using Airborne Gravity Survey

    DEFF Research Database (Denmark)

    Fauzi Nordin, Ahmad; Jamil, Hassan; Noor Isa, Mohd

    2016-01-01

    Airborne gravimetry is an effective tool for mapping local gravity fields using a combination of airborne sensors, aircraft and positioning systems. It is suitable for gravity surveys over difficult terrains and areas mixed with land and ocean. This paper describes the geological mapping of Sabah...... using airborne gravity surveys. Airborne gravity data over land areas of Sabah has been combined with the marine airborne gravity data to provide a seamless land-to-sea gravity field coverage in order to produce the geological mapping. Free-air and Bouguer anomaly maps (density 2.67 g/cm3) have been...... derived from the airborne data both as simple ad-hoc plots (at aircraft altitude), and as final plots from the downward continued airborne data, processed as part of the geoids determination. Data are gridded at 0.025 degree spacing which is about 2.7 km and the data resolution of the filtered airborne...

  14. Mapping the backbone of science.

    Energy Technology Data Exchange (ETDEWEB)

    Klavans, Richard (Indiana University, Bloomington, IN); BÞorner, Katy (Strategies for Science & Technology, Incorporation, Berwyn, PA); Boyack, Kevin W.

    2004-11-01

    This paper presents a new map representing the structure of all of science, based on journal articles, including both the natural and social sciences. Similar to cartographic maps of our world, the map of science provides a bird's eye view of today's scientific landscape. It can be used to visually identify major areas of science, their size, similarity, and interconnectedness. In order to be useful, the map needs to be accurate on a local and on a global scale. While our recent work has focused on the former aspect, this paper summarizes results on how to achieve structural accuracy. Eight alternative measures of journal similarity were applied to a data set of 7,121 journals covering over 1 million documents in the combined Science Citation and Social Science Citation Indexes. For each journal similarity measure we generated two-dimensional spatial layouts using the force-directed graph layout tool, VxOrd. Next, mutual information values were calculated for each graph at different clustering levels to give a measure of structural accuracy for each map. The best co-citation and inter-citation maps according to local and structural accuracy were selected and are presented and characterized. These two maps are compared to establish robustness. The inter-citation map is then used to examine linkages between disciplines. Biochemistry appears as the most interdisciplinary discipline in science.

  15. Thematic mapping from satellite imagery

    CERN Document Server

    Denègre, J

    2013-01-01

    Thematic Mapping from Satellite Imagery: A Guidebook discusses methods in producing maps using satellite images. The book is comprised of five chapters; each chapter covers one stage of the process. Chapter 1 tackles the satellite remote sensing imaging and its cartographic significance. Chapter 2 discusses the production processes for extracting information from satellite data. The next chapter covers the methods for combining satellite-derived information with that obtained from conventional sources. Chapter 4 deals with design and semiology for cartographic representation, and Chapter 5 pre

  16. Fostering clinical reasoning in physiotherapy: comparing the effects of concept map study and concept map completion after example study in novice and advanced learners.

    Science.gov (United States)

    Montpetit-Tourangeau, Katherine; Dyer, Joseph-Omer; Hudon, Anne; Windsor, Monica; Charlin, Bernard; Mamede, Sílvia; van Gog, Tamara

    2017-12-01

    Health profession learners can foster clinical reasoning by studying worked examples presenting fully worked out solutions to a clinical problem. It is possible to improve the learning effect of these worked examples by combining them with other learning activities based on concept maps. This study investigated which combinaison of activities, worked examples study with concept map completion or worked examples study with concept map study, fosters more meaningful learning of intervention knowledge in physiotherapy students. Moreover, this study compared the learning effects of these learning activity combinations between novice and advanced learners. Sixty-one second-year physiotherapy students participated in the study which included a pre-test phase, a 130-min guided-learning phase and a four-week self-study phase. During the guided and self-study learning sessions, participants had to study three written worked examples presenting the clinical reasoning for selecting electrotherapeutic currents to treat patients with motor deficits. After each example, participants engaged in either concept map completion or concept map study depending on which learning condition they were randomly allocated to. Students participated in an immediate post-test at the end of the guided-learning phase and a delayed post-test at the end of the self-study phase. Post-tests assessed the understanding of principles governing the domain of knowledge to be learned (conceptual knowledge) and the ability to solve new problems that have similar (i.e., near transfer) or different (i.e., far transfer) solution rationales as problems previously studied in the examples. Learners engaged in concept map completion outperformed those engaged in concept map study on near transfer (p = .010) and far transfer (p concept map completion led to greater transfer performance than worked examples study combined with concept map study for both novice and advanced learners. Concept map completion

  17. Mapping of multi-floor buildings: A barometric approach

    DEFF Research Database (Denmark)

    Özkil, Ali Gürcan; Fan, Zhun; Xiao, Jizhong

    2011-01-01

    This paper presents a new method for mapping multi5floor buildings. The method combines laser range sensor for metric mapping and barometric pressure sensor for detecting floor transitions and map segmentation. We exploit the fact that the barometric pressure is a function of the elevation......, and it varies between different floors. The method is tested with a real robot in a typical indoor environment, and the results show that physically consistent multi5floor representations are achievable....

  18. Surface mineral maps of Afghanistan derived from HyMap imaging spectrometer data, version 2

    Science.gov (United States)

    Kokaly, Raymond F.; King, Trude V.V.; Hoefen, Todd M.

    2013-01-01

    This report presents a new version of surface mineral maps derived from HyMap imaging spectrometer data collected over Afghanistan in the fall of 2007. This report also describes the processing steps applied to the imaging spectrometer data. The 218 individual flight lines composing the Afghanistan dataset, covering more than 438,000 square kilometers, were georeferenced to a mosaic of orthorectified Landsat images. The HyMap data were converted from radiance to reflectance using a radiative transfer program in combination with ground-calibration sites and a network of cross-cutting calibration flight lines. The U.S. Geological Survey Material Identification and Characterization Algorithm (MICA) was used to generate two thematic maps of surface minerals: a map of iron-bearing minerals and other materials, which have their primary absorption features at the shorter wavelengths of the reflected solar wavelength range, and a map of carbonates, phyllosilicates, sulfates, altered minerals, and other materials, which have their primary absorption features at the longer wavelengths of the reflected solar wavelength range. In contrast to the original version, version 2 of these maps is provided at full resolution of 23-meter pixel size. The thematic maps, MICA summary images, and the material fit and depth images are distributed in digital files linked to this report, in a format readable by remote sensing software and Geographic Information Systems (GIS). The digital files can be downloaded from http://pubs.usgs.gov/ds/787/downloads/.

  19. Cowpea–Soybean Synteny Clarified through an Improved Genetic Map

    Directory of Open Access Journals (Sweden)

    Mitchell R. Lucas

    2011-11-01

    Full Text Available Linkage mapping is relevant to modern plant biology and provides a framework for downstream analyses including quantitative trait loci identification, map-based cloning, assessment of diversity, association mapping, and molecular breeding. Here, we report a consensus genetic map of cowpea [ (L. Walp.] and synteny to other legumes based on expressed sequence tag (EST-derived single nucleotide polymorphisms (SNPs. In total, 1293 individuals representing 13 mapping populations were genotyped using an Illumina 1536 GoldenGate Assay. A consensus map containing 1107 EST-derived SNP markers (856 bins on 11 linkage groups (680 cM was constructed from 13 population-specific maps. This effort combined six new population-specific maps and seven revised population-specific maps to construct an improved consensus map with 33% more bins, 19% more markers, and improved marker order when compared to the previous cowpea SNP consensus map. Comparative and whole genome visualizations are presented as a framework for discussing map quality and synteny with soybean [ (L. Merr.].

  20. A Cognitive Support Framework for Ontology Mapping

    Science.gov (United States)

    Falconer, Sean M.; Storey, Margaret-Anne

    Ontology mapping is the key to data interoperability in the semantic web. This problem has received a lot of research attention, however, the research emphasis has been mostly devoted to automating the mapping process, even though the creation of mappings often involve the user. As industry interest in semantic web technologies grows and the number of widely adopted semantic web applications increases, we must begin to support the user. In this paper, we combine data gathered from background literature, theories of cognitive support and decision making, and an observational case study to propose a theoretical framework for cognitive support in ontology mapping tools. We also describe a tool called CogZ that is based on this framework.

  1. Inferring the most probable maps of underground utilities using Bayesian mapping model

    Science.gov (United States)

    Bilal, Muhammad; Khan, Wasiq; Muggleton, Jennifer; Rustighi, Emiliano; Jenks, Hugo; Pennock, Steve R.; Atkins, Phil R.; Cohn, Anthony

    2018-03-01

    Mapping the Underworld (MTU), a major initiative in the UK, is focused on addressing social, environmental and economic consequences raised from the inability to locate buried underground utilities (such as pipes and cables) by developing a multi-sensor mobile device. The aim of MTU device is to locate different types of buried assets in real time with the use of automated data processing techniques and statutory records. The statutory records, even though typically being inaccurate and incomplete, provide useful prior information on what is buried under the ground and where. However, the integration of information from multiple sensors (raw data) with these qualitative maps and their visualization is challenging and requires the implementation of robust machine learning/data fusion approaches. An approach for automated creation of revised maps was developed as a Bayesian Mapping model in this paper by integrating the knowledge extracted from sensors raw data and available statutory records. The combination of statutory records with the hypotheses from sensors was for initial estimation of what might be found underground and roughly where. The maps were (re)constructed using automated image segmentation techniques for hypotheses extraction and Bayesian classification techniques for segment-manhole connections. The model consisting of image segmentation algorithm and various Bayesian classification techniques (segment recognition and expectation maximization (EM) algorithm) provided robust performance on various simulated as well as real sites in terms of predicting linear/non-linear segments and constructing refined 2D/3D maps.

  2. [Functional mapping using subdural electrodes combined with monitoring during awake craniotomy enabled preservation of function and extensive resection of a glioma adjacent to the parietal lobe language sites: a case report].

    Science.gov (United States)

    Takebayashi, Kento; Saito, Taiichi; Nitta, Masayuki; Tamura, Manabu; Maruyama, Takashi; Muragaki, Yoshihiro; Okada, Yoshikazu

    2015-01-01

    Surgical resection of gliomas located in the dominant parietal lobe is difficult because this lesion is surrounded by multiple functional areas. Although functional mapping during awake craniotomy is very useful for resection of gliomas adjacent to eloquent areas, the limited time available makes it difficult to sufficiently evaluate multiple functions, such as language, calculative ability, distinction of right and left sides, and finger recognition. Here, we report a case of anaplastic oligodendroglioma, which was successfully treated with a combination of functional mapping using subdural electrodes and monitoring under awake craniotomy for glioma. A 32-year-old man presented with generalized seizure. Magnetic resonance imaging revealed a non-enhanced tumor in the left angular and supramarginal gyri. In addition, the tumor showed high accumulation on 11C-methionine positron emission tomography(PET)(tumor/normal brain tissue ratio=3.20). Preparatory mapping using subdural electrodes showed absence of brain function on the tumor lesion. Surgical removal was performed using cortical mapping during awake craniotomy with an updated navigation system using intraoperative magnetic resonance imaging(MRI). The tumor was resected until aphasia was detected by functional monitoring, and the extent of tumor resection was 93%. The patient showed transient transcortical aphasia and Gerstmann's syndrome after surgery but eventually recovered. The pathological diagnosis was anaplastic oligodendroglioma, and the patient was administered chemo-radiotherapy. The patient has been progression free for more than 2 years. The combination of subdural electrode mapping and monitoring during awake craniotomy is useful in order to achieve preservation of function and extensive resection for gliomas in the dominant parietal lobe.

  3. Flood Risk and Flood hazard maps - Visualisation of hydrological risks

    International Nuclear Information System (INIS)

    Spachinger, Karl; Dorner, Wolfgang; Metzka, Rudolf; Serrhini, Kamal; Fuchs, Sven

    2008-01-01

    Hydrological models are an important basis of flood forecasting and early warning systems. They provide significant data on hydrological risks. In combination with other modelling techniques, such as hydrodynamic models, they can be used to assess the extent and impact of hydrological events. The new European Flood Directive forces all member states to evaluate flood risk on a catchment scale, to compile maps of flood hazard and flood risk for prone areas, and to inform on a local level about these risks. Flood hazard and flood risk maps are important tools to communicate flood risk to different target groups. They provide compiled information to relevant public bodies such as water management authorities, municipalities, or civil protection agencies, but also to the broader public. For almost each section of a river basin, run-off and water levels can be defined based on the likelihood of annual recurrence, using a combination of hydrological and hydrodynamic models, supplemented by an analysis of historical records and mappings. In combination with data related to the vulnerability of a region risk maps can be derived. The project RISKCATCH addressed these issues of hydrological risk and vulnerability assessment focusing on the flood risk management process. Flood hazard maps and flood risk maps were compiled for Austrian and German test sites taking into account existing national and international guidelines. These maps were evaluated by eye-tracking using experimental graphic semiology. Sets of small-scale as well as large-scale risk maps were presented to test persons in order to (1) study reading behaviour as well as understanding and (2) deduce the most attractive components that are essential for target-oriented risk communication. A cognitive survey asking for negative and positive aspects and complexity of each single map complemented the experimental graphic semiology. The results indicate how risk maps can be improved to fit the needs of different user

  4. Groundwater vulnerability maps for pesticides for Flanders

    Science.gov (United States)

    Dams, Jef; Joris, Ingeborg; Bronders, Jan; Van Looy, Stijn; Vanden Boer, Dirk; Heuvelmans, Griet; Seuntjens, Piet

    2017-04-01

    Pesticides are increasingly being detected in shallow groundwater and and are one of the main causes of the poor chemical status of phreatic groundwater bodies in Flanders. There is a need for groundwater vulnerability maps in order to design monitoring strategies and land-use strategies for sensitive areas such as drinking water capture zones. This research focuses on the development of generic vulnerability maps for pesticides for Flanders and a tool to calculate substance-specific vulnerability maps at the scale of Flanders and at the local scale. (1) The generic vulnerability maps are constructed using an index based method in which maps of the main contributing factors in soil and saturated zone to high concentrations of pesticides in groundwater are classified and overlain. Different weights are assigned to the contributing factors according to the type of pesticide (low/high mobility, low/high persistence). Factors that are taken into account are the organic matter content and texture of soil, depth of the unsaturated zone, organic carbon and redox potential of the phreatic groundwater and thickness and conductivity of the phreatic layer. (2) Secondly a tool is developed that calculates substance-specific vulnerability maps for Flanders using a hybrid approach where a process-based leaching model GeoPEARL is combined with vulnerability indices that account for dilution in the phreatic layer. The GeoPEARL model is parameterized for Flanders in 1434 unique combinations of soil properties, climate and groundwater depth. Leaching is calculated for a 20 year period for each 50 x 50 m gridcell in Flanders. (3) At the local scale finally, a fully process-based approach is applied combining GeoPEARL leaching calculations and flowline calculations of pesticide transport in the saturated zone to define critical zones in the capture zone of a receptor such as a drinking water well or a river segment. The three approaches are explained more in detail and illustrated

  5. Distributed Monocular SLAM for Indoor Map Building

    Directory of Open Access Journals (Sweden)

    Ruwan Egodagamage

    2017-01-01

    Full Text Available Utilization and generation of indoor maps are critical elements in accurate indoor tracking. Simultaneous Localization and Mapping (SLAM is one of the main techniques for such map generation. In SLAM an agent generates a map of an unknown environment while estimating its location in it. Ubiquitous cameras lead to monocular visual SLAM, where a camera is the only sensing device for the SLAM process. In modern applications, multiple mobile agents may be involved in the generation of such maps, thus requiring a distributed computational framework. Each agent can generate its own local map, which can then be combined into a map covering a larger area. By doing so, they can cover a given environment faster than a single agent. Furthermore, they can interact with each other in the same environment, making this framework more practical, especially for collaborative applications such as augmented reality. One of the main challenges of distributed SLAM is identifying overlapping maps, especially when relative starting positions of agents are unknown. In this paper, we are proposing a system having multiple monocular agents, with unknown relative starting positions, which generates a semidense global map of the environment.

  6. Analytic transfer maps for Lie algebraic design codes

    International Nuclear Information System (INIS)

    van Zeijts, J.; Neri, F.; Dragt, A.J.

    1990-01-01

    Lie algebraic methods provide a powerful tool for modeling particle transport through Hamiltonian systems. Briefly summarized, Lie algebraic design codes work as follows: first the time t flow generated by a Hamiltonian system is represented by a Lie algebraic map acting on the initial conditions. Maps are generated for each element in the lattice or beamline under study. Next all these maps are concatenated into a one-turn or one-pass map that represents the complete dynamics of the system. Finally, the resulting map is analyzed and design decisions are made based on the linear and nonlinear entries in the map. The authors give a short description of how to find Lie algebraic transfer maps in analytic form, for inclusion in accelerator design codes. As an example they find the transfer map, through third order, for the combined-function quadrupole magnet, and use such magnets to correct detrimental third-order aberrations in a spot forming system

  7. Teachers' Perceptions of Esri Story Maps as Effective Teaching Tools

    Science.gov (United States)

    Strachan, Caitlin; Mitchell, Jerry

    2014-01-01

    The current study explores teachers' perceptions of Esri Story Maps as effective teaching tools. Story Maps are a relatively new web application created using Esri's cloud-based GIS platform, ArcGIS Online. They combine digitized, dynamic web maps with other story elements to help the creator effectively convey a message. The relative ease…

  8. Producing Distribution Maps for a Spatially-Explicit Ecosystem Model Using Large Monitoring and Environmental Databases and a Combination of Interpolation and Extrapolation

    Directory of Open Access Journals (Sweden)

    Arnaud Grüss

    2018-01-01

    Full Text Available To be able to simulate spatial patterns of predator-prey interactions, many spatially-explicit ecosystem modeling platforms, including Atlantis, need to be provided with distribution maps defining the annual or seasonal spatial distributions of functional groups and life stages. We developed a methodology combining extrapolation and interpolation of the predictions made by statistical habitat models to produce distribution maps for the fish and invertebrates represented in the Atlantis model of the Gulf of Mexico (GOM Large Marine Ecosystem (LME (“Atlantis-GOM”. This methodology consists of: (1 compiling a large monitoring database, gathering all the fisheries-independent and fisheries-dependent data collected in the northern (U.S. GOM since 2000; (2 compiling a large environmental database, storing all the environmental parameters known to influence the spatial distribution patterns of fish and invertebrates of the GOM; (3 fitting binomial generalized additive models (GAMs to the large monitoring and environmental databases, and geostatistical binomial generalized linear mixed models (GLMMs to the large monitoring database; and (4 employing GAM predictions to infer spatial distributions in the southern GOM, and GLMM predictions to infer spatial distributions in the U.S. GOM. Thus, our methodology allows for reasonable extrapolation in the southern GOM based on a large amount of monitoring and environmental data, and for interpolation in the U.S. GOM accurately reflecting the probability of encountering fish and invertebrates in that region. We used an iterative cross-validation procedure to validate GAMs. When a GAM did not pass the validation test, we employed a GAM for a related functional group/life stage to generate distribution maps for the southern GOM. In addition, no geostatistical GLMMs were fit for the functional groups and life stages whose depth, longitudinal and latitudinal ranges within the U.S. GOM are not entirely covered by

  9. Integration of linkage maps for the Amphidiploid Brassica napus and comparative mapping with Arabidopsis and Brassica rapa

    Directory of Open Access Journals (Sweden)

    Delourme Régine

    2011-02-01

    Full Text Available Abstract Background The large number of genetic linkage maps representing Brassica chromosomes constitute a potential platform for studying crop traits and genome evolution within Brassicaceae. However, the alignment of existing maps remains a major challenge. The integration of these genetic maps will enhance genetic resolution, and provide a means to navigate between sequence-tagged loci, and with contiguous genome sequences as these become available. Results We report the first genome-wide integration of Brassica maps based on an automated pipeline which involved collation of genome-wide genotype data for sequence-tagged markers scored on three extensively used amphidiploid Brassica napus (2n = 38 populations. Representative markers were selected from consolidated maps for each population, and skeleton bin maps were generated. The skeleton maps for the three populations were then combined to generate an integrated map for each LG, comparing two different approaches, one encapsulated in JoinMap and the other in MergeMap. The BnaWAIT_01_2010a integrated genetic map was generated using JoinMap, and includes 5,162 genetic markers mapped onto 2,196 loci, with a total genetic length of 1,792 cM. The map density of one locus every 0.82 cM, corresponding to 515 Kbp, increases by at least three-fold the locus and marker density within the original maps. Within the B. napus integrated map we identified 103 conserved collinearity blocks relative to Arabidopsis, including five previously unreported blocks. The BnaWAIT_01_2010a map was used to investigate the integrity and conservation of order proposed for genome sequence scaffolds generated from the constituent A genome of Brassica rapa. Conclusions Our results provide a comprehensive genetic integration of the B. napus genome from a range of sources, which we anticipate will provide valuable information for rapeseed and Canola research.

  10. Developing an ionospheric map for South Africa

    Directory of Open Access Journals (Sweden)

    D. I. Okoh

    2010-07-01

    Full Text Available The development of a map of the ionosphere over South Africa is presented in this paper. The International Reference Ionosphere (IRI model, South African Bottomside Ionospheric Model (SABIM, and measurements from ionosondes in the South African Ionosonde Network, were combined within their own limitations to develop an accurate representation of the South African ionosphere. The map is essentially in the form of a computer program that shows spatial and temporal representations of the South African ionosphere for a given set of geophysical parameters. A validation of the map is attempted using a comparison of Total Electron Content (TEC values derived from the map, from the IRI model, and from Global Positioning System (GPS measurements. It is foreseen that the final South African ionospheric map will be implemented as a Space Weather product of the African Space Weather Regional Warning Centre.

  11. An optimal strategy for functional mapping of dynamic trait loci.

    Science.gov (United States)

    Jin, Tianbo; Li, Jiahan; Guo, Ying; Zhou, Xiaojing; Yang, Runqing; Wu, Rongling

    2010-02-01

    As an emerging powerful approach for mapping quantitative trait loci (QTLs) responsible for dynamic traits, functional mapping models the time-dependent mean vector with biologically meaningful equations and are likely to generate biologically relevant and interpretable results. Given the autocorrelation nature of a dynamic trait, functional mapping needs the implementation of the models for the structure of the covariance matrix. In this article, we have provided a comprehensive set of approaches for modelling the covariance structure and incorporated each of these approaches into the framework of functional mapping. The Bayesian information criterion (BIC) values are used as a model selection criterion to choose the optimal combination of the submodels for the mean vector and covariance structure. In an example for leaf age growth from a rice molecular genetic project, the best submodel combination was found between the Gaussian model for the correlation structure, power equation of order 1 for the variance and the power curve for the mean vector. Under this combination, several significant QTLs for leaf age growth trajectories were detected on different chromosomes. Our model can be well used to study the genetic architecture of dynamic traits of agricultural values.

  12. In core system mapping reactor power distribution

    International Nuclear Information System (INIS)

    Yoriyaz, H.; Moreira, J.M.L.

    1989-01-01

    Based on the signals of SPND'S (Self Powered Neutron Detectors) distributed inside of a core, the spatial power distribution is obtained using the MAP program, developed in this work. The methodology applied in MAP program uses a least mean square technique to calculate expansion coefficients that depend on the SPND'S signals. The final power or neutron flux distribution is obtained by a combination of certains functions or expansion modes that are provided from diffusion calculation with the CITATION code. The MAP program is written in PASCAL language and will be used in IEA-R1 reactor for assisting its operation. (author) [pt

  13. Concept Mapping Using Cmap Tools to Enhance Meaningful Learning

    Science.gov (United States)

    Cañas, Alberto J.; Novak, Joseph D.

    Concept maps are graphical tools that have been used in all facets of education and training for organizing and representing knowledge. When learners build concept maps, meaningful learning is facilitated. Computer-based concept mapping software such as CmapTools have further extended the use of concept mapping and greatly enhanced the potential of the tool, facilitating the implementation of a concept map-centered learning environment. In this chapter, we briefly present concept mapping and its theoretical foundation, and illustrate how it can lead to an improved learning environment when it is combined with CmapTools and the Internet. We present the nationwide “Proyecto Conéctate al Conocimiento” in Panama as an example of how concept mapping, together with technology, can be adopted by hundreds of schools as a means to enhance meaningful learning.

  14. Identification of discrete chaotic maps with singular points

    Directory of Open Access Journals (Sweden)

    P. G. Akishin

    2001-01-01

    Full Text Available We investigate the ability of artificial neural networks to reconstruct discrete chaotic maps with singular points. We use as a simple test model the Cusp map. We compare the traditional Multilayer Perceptron, the Chebyshev Neural Network and the Wavelet Neural Network. The numerical scheme for the accurate determination of a singular point is also developed. We show that combining a neural network with the numerical algorithm for the determination of the singular point we are able to accurately approximate discrete chaotic maps with singularities.

  15. Mapping out Map Libraries

    Directory of Open Access Journals (Sweden)

    Ferjan Ormeling

    2008-09-01

    Full Text Available Discussing the requirements for map data quality, map users and their library/archives environment, the paper focuses on the metadata the user would need for a correct and efficient interpretation of the map data. For such a correct interpretation, knowledge of the rules and guidelines according to which the topographers/cartographers work (such as the kind of data categories to be collected, and the degree to which these rules and guidelines were indeed followed are essential. This is not only valid for the old maps stored in our libraries and archives, but perhaps even more so for the new digital files as the format in which we now have to access our geospatial data. As this would be too much to ask from map librarians/curators, some sort of web 2.0 environment is sought where comments about data quality, completeness and up-to-dateness from knowledgeable map users regarding the specific maps or map series studied can be collected and tagged to scanned versions of these maps on the web. In order not to be subject to the same disadvantages as Wikipedia, where the ‘communis opinio’ rather than scholarship, seems to be decisive, some checking by map curators of this tagged map use information would still be needed. Cooperation between map curators and the International Cartographic Association ( ICA map and spatial data use commission to this end is suggested.

  16. mapKITE: A NEW PARADIGM FOR SIMULTANEOUS AERIAL AND TERRESTRIAL GEODATA ACQUISITION AND MAPPING

    Directory of Open Access Journals (Sweden)

    P. Molina

    2016-06-01

    Full Text Available We introduce a new mobile, simultaneous terrestrial and aerial, geodata collection and post-processing method: mapKITE. By combining two mapping technologies such as terrestrial mobile mapping and unmanned aircraft aerial mapping, geodata are simultaneously acquired from air and ground. More in detail, a mapKITE geodata acquisition system consists on an unmanned aircraft and a terrestrial vehicle, which hosts the ground control station. By means of a real-time navigation system on the terrestrial vehicle, real-time waypoints are sent to the aircraft from the ground. By doing so, the aircraft is linked to the terrestrial vehicle through a “virtual tether,” acting as a “mapping kite.” In the article, we entail the concept of mapKITE as well as the various technologies and techniques involved, from aircraft guidance and navigation based on IMU and GNSS, optical cameras for mapping and tracking, sensor orientation and calibration, etc. Moreover, we report of a new measurement introduced in mapKITE, that is, point-and-scale photogrammetric measurements [of image coordinates and scale] for optical targets of known size installed on the ground vehicle roof. By means of accurate posteriori trajectory determination of the terrestrial vehicle, mapKITE benefits then from kinematic ground control points which are photogrametrically observed by point-and-scale measures. Initial results for simulated configurations show that these measurements added to the usual Integrated Sensor Orientation ones reduce or even eliminate the need of conventional ground control points –therefore, lowering mission costs– and enable selfcalibration of the unmanned aircraft interior orientation parameters in corridor configurations, in contrast to the situation of traditional corridor configurations. Finally, we report about current developments of the first mapKITE prototype, developed under the European Union Research and Innovation programme Horizon 2020. The first

  17. Arsenic-Safe Aquifers in Coastal Bangladesh: AN Investigation with Ordinary Kriging Estimation

    Science.gov (United States)

    Hassan, M. M.; Ahamed, R.

    2017-10-01

    Spatial point pattern is one of the most suitable methods for analysing groundwater arsenic concentrations. Groundwater arsenic poisoning in Bangladesh has been one of the biggest environmental health disasters in recent times. About 85 million people are exposed to arsenic more than 50 μg/L in drinking water. The paper seeks to identify the existing suitable aquifers for arsenic-safe drinking water along with "spatial arsenic discontinuity" using GIS-based spatial geostatistical analysis in a small study site (12.69 km2) in the coastal belt of southwest Bangladesh (Dhopakhali union of Bagerhat district). The relevant spatial data were collected with Geographical Positioning Systems (GPS), arsenic data with field testing kits, tubewell attributes with observation and questionnaire survey. Geostatistics with kriging methods can design water quality monitoring in different aquifers with hydrochemical evaluation by spatial mapping. The paper presents the interpolation of the regional estimates of arsenic data for spatial discontinuity mapping with Ordinary Kriging (OK) method that overcomes the areal bias problem for administrative boundary. This paper also demonstrates the suitability of isopleth maps that is easier to read than choropleth maps. The OK method investigated that around 80 percent of the study site are contaminated following the Bangladesh Drinking Water Standards (BDWS) of 50 μg/L. The study identified a very few scattered "pockets" of arsenic-safe zone at the shallow aquifer.

  18. Integrating satellite imagery with simulation modeling to improve burn severity mapping

    Science.gov (United States)

    Eva C. Karau; Pamela G. Sikkink; Robert E. Keane; Gregory K. Dillon

    2014-01-01

    Both satellite imagery and spatial fire effects models are valuable tools for generating burn severity maps that are useful to fire scientists and resource managers. The purpose of this study was to test a new mapping approach that integrates imagery and modeling to create more accurate burn severity maps. We developed and assessed a statistical model that combines the...

  19. A strong open mapping theorem for surjections from cones onto Banach spaces

    NARCIS (Netherlands)

    Jeu, de M.F.E.; Messerschmidt, H.J.M.

    2014-01-01

    We show that a continuous additive positively homogeneous map from a closed not necessarily proper cone in a Banach space onto a Banach space is an open map precisely when it is surjective. This generalization of the usual Open Mapping Theorem for Banach spaces is then combined with Michael's

  20. Graphical function mapping as a new way to explore cause-and-effect chains

    Science.gov (United States)

    Evans, Mary Anne

    2016-01-01

    Graphical function mapping provides a simple method for improving communication within interdisciplinary research teams and between scientists and nonscientists. This article introduces graphical function mapping using two examples and discusses its usefulness. Function mapping projects the outcome of one function into another to show the combined effect. Using this mathematical property in a simpler, even cartoon-like, graphical way allows the rapid combination of multiple information sources (models, empirical data, expert judgment, and guesses) in an intuitive visual to promote further discussion, scenario development, and clear communication.

  1. Spatial distribution of West Nile virus in humans and mosquitoes in Israel, 2000-2014.

    Science.gov (United States)

    Lustig, Yaniv; Kaufman, Zalman; Mendelson, Ella; Orshan, Laor; Anis, Emilia; Glazer, Yael; Cohen, Daniel; Shohat, Tamy; Bassal, Ravit

    2017-11-01

    Israel has a long history of West Nile virus (WNV) morbidity, and the rate of detection of WNV in mosquitoes has been high since 2000. The aim of this study was to integrate several WNV datasets in order to gain an insight into the geographical distribution of WNV in Israel. Three choropleth maps were generated showing WNV human morbidity, WNV prevalence in mosquitoes, and the results of a nationwide serological survey, based on the division of Israel into 15 sub-districts. The maps show a high endemicity of WNV in Israel. In respect to the morbidity map, the population residing in the central part of the country and in Arava Region is at higher risk of developing the disease than the population of the rest of Israel. Interestingly, high prevalence rates of both WNV serology and WNV-infected mosquitoes were detected in Arava Region, but lower prevalence rates were detected in most areas of the coastal region, suggesting that other factors might also be important in the development of symptomatic WNV infections. These results underline the high prevalence of WNV in Israel and point to specific risk areas for WNV infections across the country. Copyright © 2017 The Author(s). Published by Elsevier Ltd.. All rights reserved.

  2. Supporting Problem-Solving Performance Through the Construction of Knowledge Maps

    Science.gov (United States)

    Lee, Youngmin; Baylor, Amy L.; Nelson, David W.

    2005-01-01

    The purpose of this article is to provide five empirically-derived guidelines for knowledge map construction tools that facilitate problem solving. First, the combinational representation principle proposes that conceptual and corresponding procedural knowledge should be represented together (rather than separately) within the knowledge map.…

  3. Nielsen number of a covering map

    Directory of Open Access Journals (Sweden)

    Jezierski Jerzy

    2006-01-01

    Full Text Available We consider a finite regular covering over a compact polyhedron and a map admitting a lift . We show some formulae expressing the Nielsen number as a linear combination of the Nielsen numbers of its lifts.

  4. Direct identification of antibiotic resistance genes on single plasmid molecules using CRISPR/Cas9 in combination with optical DNA mapping

    Science.gov (United States)

    Müller, Vilhelm; Rajer, Fredrika; Frykholm, Karolin; Nyberg, Lena K.; Quaderi, Saair; Fritzsche, Joachim; Kristiansson, Erik; Ambjörnsson, Tobias; Sandegren, Linus; Westerlund, Fredrik

    2016-12-01

    Bacterial plasmids are extensively involved in the rapid global spread of antibiotic resistance. We here present an assay, based on optical DNA mapping of single plasmids in nanofluidic channels, which provides detailed information about the plasmids present in a bacterial isolate. In a single experiment, we obtain the number of different plasmids in the sample, the size of each plasmid, an optical barcode that can be used to identify and trace the plasmid of interest and information about which plasmid that carries a specific resistance gene. Gene identification is done using CRISPR/Cas9 loaded with a guide-RNA (gRNA) complementary to the gene of interest that linearizes the circular plasmids at a specific location that is identified using the optical DNA maps. We demonstrate the principle on clinically relevant extended spectrum beta-lactamase (ESBL) producing isolates. We discuss how the gRNA sequence can be varied to obtain the desired information. The gRNA can either be very specific to identify a homogeneous group of genes or general to detect several groups of genes at the same time. Finally, we demonstrate an example where we use a combination of two gRNA sequences to identify carbapenemase-encoding genes in two previously not characterized clinical bacterial samples.

  5. Spatial distribution maps for benthic communities

    DEFF Research Database (Denmark)

    Sørensen, Per S.

    1999-01-01

    ecosystems, were selected. These species are supposed to be good indicators of marine ecosystem health. The hydroacoustic measurements comprise preprocessed echo sounder recordings and side-scan sonar data forming a large and unique collection of datasets based on 4 field campaigns in Øresund...... of the distribution maps and to be combined with biogeochemical models describing spatiotemporal population dynamics. Finally, the use of side-scan sonar data is illustrated in a data fusion exercise combining side-scan sonar data with the results based on echo sounder measurements. The feasible use of side......-scan sonar for mapping of benthic communities remains an open task to be studied in the future. The data processing methodology developed is a contribution to the emerging field of hydroacoustic marine biology. The method of penalised maximum pseudo-likelihood for estimation of the Ising model under a huge...

  6. The BridgeDb framework: standardized access to gene, protein and metabolite identifier mapping services

    Directory of Open Access Journals (Sweden)

    Hanspers Kristina

    2010-01-01

    Full Text Available Abstract Background Many complementary solutions are available for the identifier mapping problem. This creates an opportunity for bioinformatics tool developers. Tools can be made to flexibly support multiple mapping services or mapping services could be combined to get broader coverage. This approach requires an interface layer between tools and mapping services. Results Here we present BridgeDb, a software framework for gene, protein and metabolite identifier mapping. This framework provides a standardized interface layer through which bioinformatics tools can be connected to different identifier mapping services. This approach makes it easier for tool developers to support identifier mapping. Mapping services can be combined or merged to support multi-omics experiments or to integrate custom microarray annotations. BridgeDb provides its own ready-to-go mapping services, both in webservice and local database forms. However, the framework is intended for customization and adaptation to any identifier mapping service. BridgeDb has already been integrated into several bioinformatics applications. Conclusion By uncoupling bioinformatics tools from mapping services, BridgeDb improves capability and flexibility of those tools. All described software is open source and available at http://www.bridgedb.org.

  7. An operational map of the Polish Coastal Front 1970

    DEFF Research Database (Denmark)

    Nielsen, Thomas Theis; Svenningsen, Stig Roar; Tinning, Morten

    2016-01-01

    The map of the Operational Plan for the Coastal Front, from Poland 1970 forms the basis for this paper. The map portraits the blueprint of the combined operational war plans for the Polish military in the late 1960’s and 70’s. It details the offensive against NATO countries and their forces...

  8. Construction of a genetic linkage map in Lilium using a RIL mapping population based on SRAP marker

    Directory of Open Access Journals (Sweden)

    Chen Li-Jing

    2015-01-01

    Full Text Available A genetic linkage map of lily was constructed using RILs (recombinant inbred lines population of 180 individuals. This mapping population was developed by crossing Raizan No.1 (Formolongo and Gelria (Longiflomm cultivars through single-seed descent (SSD. SRAPs were generated by using restriction enzymes EcoRI in combination with either MseI. The resulting products were separated by electrophoresis on 6% denaturing polyacrylamide gel and visualized by silver staining. The segregation of each marker and linkage analysis was done using the program Mapmaker3.0. With 50 primer pairs, a total of 189 parental polymorphic bands were detected and 78 were used for mapping. The total map length was 2,135.5 cM consisted of 16 linkage groups. The number of markers in the linkage groups varied from 1 to 12. The length of linkage groups was range from 11.2 cM to 425.9 cM and mean marker interval distance range from 9.4 cM to 345.4 cM individually. The mean marker interval distance between markers was 27.4 cM. The map developed in the present study was the first sequence-related amplified polymorphism markers map of lily constructed with recombinant inbred lines, it could be used for genetic mapping and molecular marker assisted breeding and quantitative trait locus mapping of Lilium.

  9. Combined Use of Landsat-8 and Sentinel-2A Images for Winter Crop Mapping and Winter Wheat Yield Assessment at Regional Scale

    Science.gov (United States)

    Skakun, Sergii; Vermote, Eric; Roger, Jean-Claude; Franch, Belen

    2017-01-01

    Timely and accurate information on crop yield and production is critical to many applications within agriculture monitoring. Thanks to its coverage and temporal resolution, coarse spatial resolution satellite imagery has always been a source of valuable information for yield forecasting and assessment at national and regional scales. With availability of free images acquired by Landsat-8 and Sentinel-2 remote sensing satellites, it becomes possible to provide temporal resolution of an image every 3-5 days, and therefore, to develop next generation agriculture products at higher spatial resolution (10-30 m). This paper explores the combined use of Landsat-8 and Sentinel-2A for winter crop mapping and winter wheat yield assessment at regional scale. For the former, we adapt a previously developed approach for the Moderate Resolution Imaging Spectroradiometer (MODIS) instrument at 250 m resolution that allows automatic mapping of winter crops taking into account a priori knowledge on crop calendar. For the latter, we use a generalized winter wheat yield forecasting model that is based on estimation of the peak Normalized Difference Vegetation Index (NDVI) from MODIS image time-series, and further downscaled to be applicable at 30 m resolution. We show that integration of Landsat-8 and Sentinel-2A improves both winter crop mapping and winter wheat yield assessment. In particular, the error of winter wheat yield estimates can be reduced up to 1.8 times compared to using a single satellite.

  10. Combined Use of Landsat-8 and Sentinel-2A Images for Winter Crop Mapping and Winter Wheat Yield Assessment at Regional Scale

    Directory of Open Access Journals (Sweden)

    Sergii Skakun

    2017-05-01

    Full Text Available Timely and accurate information on crop yield and production is critical to many applications within agriculture monitoring. Thanks to its coverage and temporal resolution, coarse spatial resolution satellite imagery has always been a source of valuable information for yield forecasting and assessment at national and regional scales. With availability of free images acquired by Landsat-8 and Sentinel-2 remote sensing satellites, it becomes possible to provide temporal resolution of 3–5 days, and therefore, to develop next generation agriculture products at higher spatial resolution (10–30 m. This paper explores the combined use of Landsat-8 and Sentinel-2A for winter crop mapping and winter wheat yield assessment at regional scale. For the former, we adapt a previously developed approach for the Moderate Resolution Imaging Spectroradiometer (MODIS instrument at 250 m resolution that allows automatic mapping of winter crops taking into account a priori knowledge on crop calendar. For the latter, we use a generalized winter wheat yield forecasting model that is based on estimation of the peak Normalized Difference Vegetation Index (NDVI from MODIS image time-series, and further downscaled to be applicable at 30 m resolution. We show that integration of Landsat-8 and Sentinel-2A improves both winter crop mapping and winter wheat yield assessment. In particular, the error of winter wheat yield estimates can be reduced up to 1.8 times compared to using a single satellite.

  11. Combining powers of linkage and association mapping for precise dissection of QTL controlling resistance to gray leaf spot disease in maize (Zea mays L.).

    Science.gov (United States)

    Mammadov, Jafar; Sun, Xiaochun; Gao, Yanxin; Ochsenfeld, Cherie; Bakker, Erica; Ren, Ruihua; Flora, Jonathan; Wang, Xiujuan; Kumpatla, Siva; Meyer, David; Thompson, Steve

    2015-11-10

    Gray Leaf Spot (GLS causal agents Cercospora zeae-maydis and Cercospora zeina) is one of the most important foliar diseases of maize in all areas where the crop is being cultivated. Although in the USA the situation with GLS severity is not as critical as in sub-Saharan Africa or Brazil, the evidence of climate change, increasing corn monoculture as well as the narrow genetic base of North American resistant germplasm can turn the disease into a serious threat to US corn production. The development of GLS resistant cultivars is one way to control the disease. In this study we combined the high QTL detection power of genetic linkage mapping with the high resolution power of genome-wide association study (GWAS) to precisely dissect QTL controlling GLS resistance and identify closely linked molecular markers for robust marker-assisted selection and trait introgression. Using genetic linkage analysis with a small bi-parental mapping population, we identified four GLS resistance QTL on chromosomes 1, 6, 7, and 8, which were validated by GWAS. GWAS enabled us to dramatically increase the resolution within the confidence intervals of the above-mentioned QTL. Particularly, GWAS revealed that QTLGLSchr8, detected by genetic linkage mapping as a locus with major effect, was likely represented by two QTL with smaller effects. Conducted in parallel, GWAS of days-to-silking demonstrated the co-localization of flowering time QTL with GLS resistance QTL on chromosome 7 indicating that either QTLGLSchr7 is a flowering time QTL or it is a GLS resistance QTL that co-segregates with the latter. As a result, this genetic linkage - GWAS hybrid mapping system enabled us to identify one novel GLS resistance QTL (QTLGLSchr8a) and confirm with more refined positions four more previously mapped QTL (QTLGLSchr1, QTLGLSchr6, QTLGLSchr7, and QTLGLSchr8b). Through the novel Single Donor vs. Elite Panel method we were able to identify within QTL confidence intervals SNP markers that would be

  12. Development and evaluation of a specialized task taxonomy for spatial planning - A map literacy experiment with topographic maps

    Science.gov (United States)

    Rautenbach, Victoria; Coetzee, Serena; Çöltekin, Arzu

    2017-05-01

    Topographic maps are among the most commonly used map types, however, their complex and information-rich designs depicting natural, human-made and cultural features make them difficult to read. Regardless of their complexity, spatial planners make extensive use of topographic maps in their work. On the other hand, various studies suggest that map literacy among the development planning professionals in South Africa is not very high. The widespread use of topographic maps combined with the low levels of map literacy presents challenges for effective development planning. In this paper we address some of these challenges by developing a specialized task taxonomy based on systematically assessed map literacy levels; and conducting an empirical experiment with topographic maps to evaluate our task taxonomy. In such empirical studies if non-realistic tasks are used, the results of map literacy tests may be skewed. Furthermore, experience and familiarity with the studied map type play a role in map literacy. There is thus a need to develop map literacy tests aimed at planners specifically. We developed a taxonomy of realistic map reading tasks typically executed during the planning process. The taxonomy defines six levels tasks of increasing difficulty and complexity, ranging from recognising symbols to extracting knowledge. We hypothesized that competence in the first four levels indicates functional map literacy. In this paper, we present results from an empirical experiment with 49 map literate participants solving a subset of tasks from the first four levels of the taxonomy with a topographic map. Our findings suggest that the proposed taxonomy is a good reference for evaluating topographic map literacy. Participants solved the tasks on all four levels as expected and we therefore conclude that the experiment based on the first four levels of the taxonomy successfully determined the functional map literacy of the participants. We plan to continue the study for the

  13. Crowdsourced Mapping - Letting Amateurs Into the Temple?

    Science.gov (United States)

    McCullagh, M.; Jackson, M.

    2013-05-01

    The rise of crowdsourced mapping data is well documented and attempts to integrate such information within existing or potential NSDIs [National Spatial Data Infrastructures] are increasingly being examined. The results of these experiments, however, have been mixed and have left many researchers uncertain and unclear of the benefits of integration and of solutions to problems of use for such combined and potentially synergistic mapping tools. This paper reviews the development of the crowdsource mapping movement and discusses the applications that have been developed and some of the successes achieved thus far. It also describes the problems of integration and ways of estimating success, based partly on a number of on-going studies at the University of Nottingham that look at different aspects of the integration problem: iterative improvement of crowdsource data quality, comparison between crowdsourced data and prior knowledge and models, development of trust in such data, and the alignment of variant ontologies. Questions of quality arise, particularly when crowdsource data are combined with pre-existing NSDI data. The latter is usually stable, meets international standards and often provides national coverage for use at a variety of scales. The former is often partial, without defined quality standards, patchy in coverage, but frequently addresses themes very important to some grass roots group and often to society as a whole. This group might be of regional, national, or international importance that needs a mapping facility to express its views, and therefore should combine with local NSDI initiatives to provide valid mapping. Will both groups use ISO (International Organisation for Standardisation) and OGC (Open Geospatial Consortium) standards? Or might some extension or relaxation be required to accommodate the mostly less rigorous crowdsourced data? So, can crowdsourced data ever be safely and successfully merged into an NSDI? Should it be simply a

  14. Hybrid PET/MR imaging: an algorithm to reduce metal artifacts from dental implants in Dixon-based attenuation map generation using a multiacquisition variable-resonance image combination sequence.

    Science.gov (United States)

    Burger, Irene A; Wurnig, Moritz C; Becker, Anton S; Kenkel, David; Delso, Gaspar; Veit-Haibach, Patrick; Boss, Andreas

    2015-01-01

    It was the aim of this study to implement an algorithm modifying Dixon-based MR imaging datasets for attenuation correction in hybrid PET/MR imaging with a multiacquisition variable resonance image combination (MAVRIC) sequence to reduce metal artifacts. After ethics approval, in 8 oncologic patients with dental implants data were acquired in a trimodality setup with PET/CT and MR imaging. The protocol included a whole-body 3-dimensional dual gradient-echo sequence (Dixon) used for MR imaging-based PET attenuation correction and a high-resolution MAVRIC sequence, applied in the oral area compromised by dental implants. An algorithm was implemented correcting the Dixon-based μ maps using the MAVRIC in areas of Dixon signal voids. The artifact size of the corrected μ maps was compared with the uncorrected MR imaging μ maps. The algorithm was robust in all patients. There was a significant reduction in mean artifact size of 70.5% between uncorrected and corrected μ maps from 697 ± 589 mm(2) to 202 ± 119 mm(2) (P = 0.016). The proposed algorithm could improve MR imaging-based attenuation correction in critical areas, when standard attenuation correction is hampered by metal artifacts, using a MAVRIC. © 2015 by the Society of Nuclear Medicine and Molecular Imaging, Inc.

  15. Multitracer CMB delensing maps from Planck and WISE data

    Science.gov (United States)

    Yu, Byeonghee; Hill, J. Colin; Sherwin, Blake D.

    2017-12-01

    Delensing, the removal of the limiting lensing B -mode background, is crucial for the success of future cosmic microwave background (CMB) surveys in constraining inflationary gravitational waves (IGWs). In recent work, delensing with large-scale structure tracers has emerged as a promising method both for improving constraints on IGWs and for testing delensing methods for future use. However, the delensing fractions (i.e., the fraction of the lensing-B mode power removed) achieved by recent efforts have been only 20%-30%. In this work, we provide a detailed characterization of a full-sky, dust-cleaned cosmic infrared background (CIB) map for delensing and construct a further-improved delensing template by adding additional tracers to increase delensing performance. In particular, we build a multitracer delensing template by combining the dust-cleaned Planck CIB map with a reconstructed CMB lensing map from Planck and a galaxy number density map from the Wide-field Infrared Survey Explorer (WISE) satellite. For this combination, we calculate the relevant weightings by fitting smooth templates to measurements of all the cross-spectra and autospectra of these maps. On a large fraction of the sky (fsky=0.43 ), we demonstrate that our maps are capable of providing a delensing factor of 43 ±1 % ; using a more restrictive mask (fsky=0.11 ), the delensing factor reaches 48 ±1 % . For low-noise surveys, our delensing maps, which cover much of the sky, can thus improve constraints on the tensor-to-scalar ratio (r ) by nearly a factor of 2. The delensing tracer maps are made publicly available, and we encourage their use in ongoing and upcoming B -mode surveys.

  16. Mapping Priorities to Focus Cropland Mapping Activities: Fitness Assessment of Existing Global, Regional and National Cropland Maps

    Directory of Open Access Journals (Sweden)

    François Waldner

    2015-06-01

    Full Text Available Timely and accurate information on the global cropland extent is critical for applications in the fields of food security, agricultural monitoring, water management, land-use change modeling and Earth system modeling. On the one hand, it gives detailed location information on where to analyze satellite image time series to assess crop condition. On the other hand, it isolates the agriculture component to focus food security monitoring on agriculture and to assess the potential impacts of climate change on agricultural lands. The cropland class is often poorly captured in global land cover products due to its dynamic nature and the large variety of agro-systems. The overall objective was to evaluate the current availability of cropland datasets in order to propose a strategic planning and effort distribution for future cropland mapping activities and, therefore, to maximize their impact. Following a very comprehensive identification and collection of national to global land cover maps, a multi-criteria analysis was designed at the country level to identify the priority areas for cropland mapping. As a result, the analysis highlighted priority regions, such as Western Africa, Ethiopia, Madagascar and Southeast Asia, for the remote sensing community to focus its efforts. A Unified Cropland Layer at 250 m for the year 2014 was produced combining the fittest products. It was assessed using global validation datasets and yields an overall accuracy ranging from 82%–94%. Masking cropland areas with a global forest map reduced the commission errors from 46% down to 26%. Compared to the GLC-Share and the International Institute for Applied Systems Analysis-International Food Policy Research Institute (IIASA-IFPRI cropland maps, significant spatial disagreements were found, which might be attributed to discrepancies in the cropland definition. This advocates for a shared definition of cropland, as well as global validation datasets relevant for the

  17. a Laser-Slam Algorithm for Indoor Mobile Mapping

    Science.gov (United States)

    Zhang, Wenjun; Zhang, Qiao; Sun, Kai; Guo, Sheng

    2016-06-01

    A novel Laser-SLAM algorithm is presented for real indoor environment mobile mapping. SLAM algorithm can be divided into two classes, Bayes filter-based and graph optimization-based. The former is often difficult to guarantee consistency and accuracy in largescale environment mapping because of the accumulative error during incremental mapping. Graph optimization-based SLAM method often assume predetermined landmarks, which is difficult to be got in unknown environment mapping. And there most likely has large difference between the optimize result and the real data, because the constraints are too few. This paper designed a kind of sub-map method, which could map more accurately without predetermined landmarks and avoid the already-drawn map impact on agent's location. The tree structure of sub-map can be indexed quickly and reduce the amount of memory consuming when mapping. The algorithm combined Bayes-based and graph optimization-based SLAM algorithm. It created virtual landmarks automatically by associating data of sub-maps for graph optimization. Then graph optimization guaranteed consistency and accuracy in large-scale environment mapping and improved the reasonability and reliability of the optimize results. Experimental results are presented with a laser sensor (UTM 30LX) in official buildings and shopping centres, which prove that the proposed algorithm can obtain 2D maps within 10cm precision in indoor environment range from several hundreds to 12000 square meter.

  18. National Seabed Mapping Programmes Collaborate to Advance Marine Geomorphological Mapping in Adjoining European Seas

    Science.gov (United States)

    Monteys, X.; Guinan, J.; Green, S.; Gafeira, J.; Dove, D.; Baeten, N. J.; Thorsnes, T.

    2017-12-01

    Marine geomorphological mapping is an effective means of characterising and understanding the seabed and its features with direct relevance to; offshore infrastructure placement, benthic habitat mapping, conservation & policy, marine spatial planning, fisheries management and pure research. Advancements in acoustic survey techniques and data processing methods resulting in the availability of high-resolution marine datasets e.g. multibeam echosounder bathymetry and shallow seismic mean that geological interpretations can be greatly improved by combining with geomorphological maps. Since December 2015, representatives from the national seabed mapping programmes of Norway (MAREANO), Ireland (INFOMAR) and the United Kingdom (MAREMAP) have collaborated and established the MIM geomorphology working group) with the common aim of advancing best practice for geological mapping in their adjoining sea areas in north-west Europe. A recently developed two-part classification system for Seabed Geomorphology (`Morphology' and Geomorphology') has been established as a result of an initiative led by the British Geological Survey (BGS) with contributions from the MIM group (Dove et al. 2016). To support the scheme, existing BGS GIS tools (SIGMA) have been adapted to apply this two-part classification system and here we present on the tools effectiveness in mapping geomorphological features, along with progress in harmonising the classification and feature nomenclature. Recognising that manual mapping of seabed features can be time-consuming and subjective, semi-automated approaches for mapping seabed features and improving mapping efficiency is being developed using Arc-GIS based tools. These methods recognise, spatially delineate and morphologically describe seabed features such as pockmarks (Gafeira et al., 2012) and cold-water coral mounds. Such tools utilise multibeam echosounder data or any other bathymetric dataset (e.g. 3D seismic, Geldof et al., 2014) that can produce a

  19. Into a Mapping of Copenhagen Street Lighting 2014

    DEFF Research Database (Denmark)

    Bülow, Katja; Asp, Claus; Kongshaug, Jesper

    LED lighting is a new lighting component in urban Spaces. How does LED lighting change the visual experience of a street, how did it use to be and how will it become? The book presents a mapping method in which an overview map of light sources in the Copenhagen streets is combined with a video...... recording and a series of photos from a route, whick goes through different city parts and types of streets. The mapping is done in the crucial changing fase, in which the street lighting in Copenhagen is a mix of previously used light sources and LED....

  20. Mapping Urban Environmental Noise Using Smartphones

    Directory of Open Access Journals (Sweden)

    Jinbo Zuo

    2016-10-01

    Full Text Available Noise mapping is an effective method of visualizing and accessing noise pollution. In this paper, a noise-mapping method based on smartphones to effectively and easily measure environmental noise is proposed. By using this method, a noise map of an entire area can be created using limited measurement data. To achieve the measurement with certain precision, a set of methods was designed to calibrate the smartphones. Measuring noise with mobile phones is different from the traditional static observations. The users may be moving at any time. Therefore, a method of attaching an additional microphone with a windscreen is proposed to reduce the wind effect. However, covering an entire area is impossible. Therefore, an interpolation method is needed to achieve full coverage of the area. To reduce the influence of spatial heterogeneity and improve the precision of noise mapping, a region-based noise-mapping method is proposed in this paper, which is based on the distribution of noise in different region types tagged by volunteers, to interpolate and combine them to create a noise map. To validate the effect of the method, a comparison of the interpolation results was made to analyse our method and the ordinary Kriging method. The result shows that our method is more accurate in reflecting the local distribution of noise and has better interpolation precision. We believe that the proposed noise-mapping method is a feasible and low-cost noise-mapping solution.

  1. Exploiting High Resolution Multi-Seasonal Textural Measures and Spectral Information for Reedbed Mapping

    Directory of Open Access Journals (Sweden)

    Alex Okiemute Onojeghuo

    2016-02-01

    Full Text Available Reedbeds across the UK are amongst the most important habitats for rare and endangered birds, wildlife and organisms. However, over the past century, this valued wetland habitat has experienced a drastic reduction in quality and spatial coverage due to pressures from human related activities. To this end, conservation organisations across the UK have been charged with the task of conserving and expanding this threatened habitat. With this backdrop, the study aimed to develop a methodology for accurate reedbed mapping through the combined use of multi-seasonal texture measures and spectral information contained in high resolution QuickBird satellite imagery. The key objectives were to determine the most effective single-date (autumn or summer and multi-seasonal QuickBird imagery suitable for reedbed mapping over the study area; to evaluate the effectiveness of combining multi-seasonal texture measures and spectral information for reedbed mapping using a variety of combinations; and to evaluate the most suitable classification technique for reedbed mapping from three selected classification techniques, namely maximum likelihood classifier, spectral angular mapper and artificial neural network. Using two selected grey-level co-occurrence textural measures (entropy and angular second moment, a series of experiments were conducted using varied combinations of single-date and multi-seasonal QuickBird imagery. Overall, the results indicate the multi-seasonal pansharpened multispectral bands (eight layers combined with all eight grey level co-occurrence matrix texture measures (entropy and angular second moment computed using windows 3 × 3 and 7 × 7 produced the optimal reedbed (76.5% and overall classification (78.1% accuracies using the maximum likelihood classifier technique. Using the optimal 16 layer multi-seasonal pansharpened multispectral and texture combined image dataset, a total reedbed area of 9.8 hectares was successfully mapped over the

  2. Digital mapping in extreme and remote environments

    Science.gov (United States)

    Andersson, Joel; Bauer, Tobias; Sarlus, Zimer; Zainy, Maher; Brethes, Anais

    2017-04-01

    During the last few years, Luleå University of Technology has performed a series of research projects in remote areas with extreme climatic conditions using digital mapping technologies. The majority of past and ongoing research projects focus on the arctic regions of the Fennoscandian Shield and Greenland but also on the Zagros fold-and-thrust belt in northern Iraq. Currently, we use the Midland Valley application FieldMove on iPad mini devices with ruggedized casings. As all projects have a strong focus on geological field work, harsh climatic conditions are a challenge not only for the geologists but also for the digital mapping hardware. In the arctic regions especially cold temperatures affect battery lifetime and performance of the screens. But also high temperatures are restricting digital mapping. From experience, a typical temperature range where digital mapping, using iPad tablets, is possible lies between -20 and +40 degrees. Furthermore, the remote character of field areas complicates access but also availability of electricity. By a combination of robust solar chargers and ruggedized batteries we are able to work entirely autarkical. Additionally, we are currently installing a drone system that allows us to map outcrops normally inaccessible because of safety reasons or time deficiency. The produced data will subsequently be taken into our Virtual Reality studio for interpretation and processing. There we will be able to work also with high resolution DEM data from Lidar scanning allowing us to interpret structural features such as post-glacial faults in areas that are otherwise only accessible by helicopter. By combining digital field mapping with drone technique and a Virtual Reality studio we are able to work in hardly accessible areas, improve safety during field work and increase efficiency substantially.

  3. Distributed autonomous mapping of indoor environments

    Science.gov (United States)

    Rogers, J.; Paluri, M.; Cunningham, A.; Christensen, H. I.; Michael, N.; Kumar, V.; Ma, J.; Matthies, L.

    2011-06-01

    This paper describes the results of a Joint Experiment performed on behalf of the MAST CTA. The system developed for the Joint Experiment makes use of three robots which work together to explore and map an unknown environment. Each of the robots used in this experiment is equipped with a laser scanner for measuring walls and a camera for locating doorways. Information from both of these types of structures is concurrently incorporated into each robot's local map using a graph based SLAM technique. A Distributed-Data-Fusion algorithm is used to efficiently combine local maps from each robot into a shared global map. Each robot computes a compressed local feature map and transmits it to neighboring robots, which allows each robot to merge its map with the maps of its neighbors. Each robot caches the compressed maps from its neighbors, allowing it to maintain a coherent map with a common frame of reference. The robots utilize an exploration strategy to efficiently cover the unknown environment which allows collaboration on an unreliable communications channel. As each new branching point is discovered by a robot, it broadcasts the information about where this point is along with the robot's path from a known landmark to the other robots. When the next robot reaches a dead-end, new branching points are allocated by auction. In the event of communication interruption, the robot which observed the branching point will eventually explore it; therefore, the exploration is complete in the face of communication failure.

  4. Testing Metadata Existence of Web Map Services

    Directory of Open Access Journals (Sweden)

    Jan Růžička

    2011-05-01

    Full Text Available For a general user is quite common to use data sources available on WWW. Almost all GIS software allow to use data sources available via Web Map Service (ISO/OGC standard interface. The opportunity to use different sources and combine them brings a lot of problems that were discussed many times on conferences or journal papers. One of the problem is based on non existence of metadata for published sources. The question was: were the discussions effective? The article is partly based on comparison of situation for metadata between years 2007 and 2010. Second part of the article is focused only on 2010 year situation. The paper is created in a context of research of intelligent map systems, that can be used for an automatic or a semi-automatic map creation or a map evaluation.

  5. High-resolution three-dimensional mapping of semiconductor dopant potentials

    DEFF Research Database (Denmark)

    Twitchett, AC; Yates, TJV; Newcomb, SB

    2007-01-01

    Semiconductor device structures are becoming increasingly three-dimensional at the nanometer scale. A key issue that must be addressed to enable future device development is the three-dimensional mapping of dopant distributions, ideally under "working conditions". Here we demonstrate how a combin......Semiconductor device structures are becoming increasingly three-dimensional at the nanometer scale. A key issue that must be addressed to enable future device development is the three-dimensional mapping of dopant distributions, ideally under "working conditions". Here we demonstrate how...... a combination of electron holography and electron tomography can be used to determine quantitatively the three-dimensional electrostatic potential in an electrically biased semiconductor device with nanometer spatial resolution....

  6. Automated lesion detection on MRI scans using combined unsupervised and supervised methods

    International Nuclear Information System (INIS)

    Guo, Dazhou; Fridriksson, Julius; Fillmore, Paul; Rorden, Christopher; Yu, Hongkai; Zheng, Kang; Wang, Song

    2015-01-01

    Accurate and precise detection of brain lesions on MR images (MRI) is paramount for accurately relating lesion location to impaired behavior. In this paper, we present a novel method to automatically detect brain lesions from a T1-weighted 3D MRI. The proposed method combines the advantages of both unsupervised and supervised methods. First, unsupervised methods perform a unified segmentation normalization to warp images from the native space into a standard space and to generate probability maps for different tissue types, e.g., gray matter, white matter and fluid. This allows us to construct an initial lesion probability map by comparing the normalized MRI to healthy control subjects. Then, we perform non-rigid and reversible atlas-based registration to refine the probability maps of gray matter, white matter, external CSF, ventricle, and lesions. These probability maps are combined with the normalized MRI to construct three types of features, with which we use supervised methods to train three support vector machine (SVM) classifiers for a combined classifier. Finally, the combined classifier is used to accomplish lesion detection. We tested this method using T1-weighted MRIs from 60 in-house stroke patients. Using leave-one-out cross validation, the proposed method can achieve an average Dice coefficient of 73.1 % when compared to lesion maps hand-delineated by trained neurologists. Furthermore, we tested the proposed method on the T1-weighted MRIs in the MICCAI BRATS 2012 dataset. The proposed method can achieve an average Dice coefficient of 66.5 % in comparison to the expert annotated tumor maps provided in MICCAI BRATS 2012 dataset. In addition, on these two test datasets, the proposed method shows competitive performance to three state-of-the-art methods, including Stamatakis et al., Seghier et al., and Sanjuan et al. In this paper, we introduced a novel automated procedure for lesion detection from T1-weighted MRIs by combining both an unsupervised and a

  7. Geologic mapping of the Amirani-Gish Bar region of Io: Implications for the global geologic mapping of Io

    Science.gov (United States)

    Williams, D.A.; Keszthelyi, L.P.; Crown, D.A.; Jaeger, W.L.; Schenk, P.M.

    2007-01-01

    We produced the first geologic map of the Amirani-Gish Bar region of Io, the last of four regional maps generated from Galileo mission data. The Amirani-Gish Bar region has five primary types of geologic materials: plains, mountains, patera floors, flows, and diffuse deposits. The flows and patera floors are thought to be compositionally similar, but are subdivided based on interpretations regarding their emplacement environments and mechanisms. Our mapping shows that volcanic activity in the Amirani-Gish Bar region is dominated by the Amirani Eruptive Center (AEC), now recognized to be part of an extensive, combined Amirani-Maui flow field. A mappable flow connects Amirani and Maui, suggesting that Maui is fed from Amirani, such that the post-Voyager designation "Maui Eruptive Center" should be revised. Amirani contains at least four hot spots detected by Galileo, and is the source of widespread bright (sulfur?) flows and active dark (silicate?) flows being emplaced in the Promethean style (slowly emplaced, compound flow fields). The floor of Gish Bar Patera has been partially resurfaced by dark lava flows, although other parts of its floor are bright and appeared unchanged during the Galileo mission. This suggests that the floor did not undergo complete resurfacing as a lava lake as proposed for other ionian paterae. There are several other hot spots in the region that are the sources of both active dark flows (confined within paterae), and SO2- and S2-rich diffuse deposits. Mapped diffuse deposits around fractures on mountains and in the plains appear to serve as the source for gas venting without the release of magma, an association previously unrecognized in this region. The six mountains mapped in this region exhibit various states of degradation. In addition to gaining insight into this region of Io, all four maps are studied to assess the best methodology to use to produce a new global geologic map of Io based on the newly released, combined Galileo

  8. Design of Intelligent Transportation Inquiry System Based on MapX in the Environment of VC++

    Directory of Open Access Journals (Sweden)

    Cheng Juan

    2016-01-01

    Full Text Available This paper applied MapInfo, the professional soft ware tool of GIS, integrated secondary exploiture combining with elctronic maps, and made use of the exploiture flat roof Visual C++ as the tool of visualize development, transferred MapX, a control of MapInfo, integrated them. The paper designed the Inquiry System in Intelligent Transportation, which including query system of road information, query system of bus information, query system of district information. It can be carried out space analysis and query function based on GIS. Adopted SQL Server manage attribute data, by data binding, attribute data in SQL Server and victor picture data were combined.

  9. The Future of Web Maps in Next Generation Textbooks

    Science.gov (United States)

    DiBiase, D.; Prasad, S.

    2014-12-01

    The reformation of the "Object Formerly Known as Textbook" (coined by the Chronicle of Higher Education) toward a digital future is underway. Emerging nextgen texts look less like electronic books ("ebooks") and more like online courseware. In addition to text and illustrations, nextgen textbooks for STEM subjects are likely to combine quizzes, grade management tools, support for social learning, and interactive media including web maps. Web maps are interactive, multi-scale, online maps that enable teachers and learners to explore, interrogate, and mash up the wide variety of map layers available in the cloud. This presentation will show how web maps coupled with interactive quizzes enable students' purposeful explorations and interpretations of spatial patterns related to humankind's interactions with the earth. Attendees will also learn about Esri's offer to donate ArcGIS Online web mapping subscriptions to every U.S. school as part of the President Obama's ConnectED initiative.

  10. New methods to enhance cerebral flow maps made by the stable xenon/CT technique

    International Nuclear Information System (INIS)

    Wist, A.O.; Fatouros, P.P.; Kishore, P.R.S.; Weiss, J.; Cothran, S.J.

    1987-01-01

    The authors developed several new techniques to extract the important information of the high-resolution flow maps as they are being generated by our improved stable Xe/CT technique. First, they adapted a new morphologic filtering technique to separate white, white/gray and gray matter. Second, they generated iso-flow lines using the same filtering technique for easier reading of the values in the flow map. Third, by combining the information in both maps, the authors constructed a new map which shows the areas of high, normal, and low blood flow for the whole brain. When combined with anatomic information, the information in the map can indicate the probable pathologic areas. Fourth, they were able to reduce the calculation time of the flow by almost a factor of 10 by developing a new, faster algorithm for calculating the flow

  11. Mixed Map Labeling

    Directory of Open Access Journals (Sweden)

    Maarten Löffler

    2016-12-01

    Full Text Available Point feature map labeling is a geometric visualization problem, in which a set of input points must be labeled with a set of disjoint rectangles (the bounding boxes of the label texts. It is predominantly motivated by label placement in maps but it also has other visualization applications. Typically, labeling models either use internal labels, which must touch their feature point, or external (boundary labels, which are placed outside the input image and which are connected to their feature points by crossing-free leader lines. In this paper we study polynomial-time algorithms for maximizing the number of internal labels in a mixed labeling model that combines internal and external labels. The model requires that all leaders are parallel to a given orientation θ ∈ [0, 2π, the value of which influences the geometric properties and hence the running times of our algorithms.

  12. Management of Combined Natural Risks - A New Approach: Keynote Address

    Science.gov (United States)

    Hanisch, Jörg

    A new attempt is made to illustrate and to quantify the relationships of individual natural hazards, their combinations and the human vulnerability to natural hazards. During many catastrophic events, combinations of different natural events aggravate their occurrence substantially. Earthquakes are frequently associated with heavy landsliding (El Salvador 2001) and heavy rainstorms are able to trigger fast running debris flows and not only floods (like during the Mitch disaster in Central America in 1998). That signifies that natural hazard maps should show the combinations of different hazards and their genetic relationships. To put into effect this, first, the individual hazards have to be assessed and presented in hazard zones (0 to 3). Then these hazards zones will be overlain using GIS techniques. In this way, e.g., an earthquake-prone area which coincides with an area susceptible to landslides (ranking 0 to 3 as well) can show hazard concentrations of up to a value of 6, simply adding the individual hazard zones. To get the result of the corresponding risk zones, the vulnerability maps of human settlements and infra-structure have to be overlain on the maps of these combinations of natural hazards.

  13. a Man-Portable Imu-Free Mobile Mapping System

    Science.gov (United States)

    Nüchter, A.; Borrmann, D.; Koch, P.; Kühn, M.; May, S.

    2015-08-01

    Mobile mapping systems are commonly mounted on cars, ships and robots. The data is directly geo-referenced using GPS data and expensive IMU (inertial measurement systems). Driven by the need for flexible, indoor mapping systems we present an inexpensive mobile mapping solution that can be mounted on a backpack. It combines a horizontally mounted 2D profiler with a constantly spinning 3D laser scanner. The initial system featuring a low-cost MEMS IMU was revealed and demonstrated at MoLaS: Technology Workshop Mobile Laser Scanning at Fraunhofer IPM in Freiburg in November 2014. In this paper, we present an IMU-free solution.

  14. Topic Map for Authentic Travel

    OpenAIRE

    Wandsvik, Atle; Zare, Mehdi

    2007-01-01

    E-business is a new trend in Internet use. Authentic travel is an approach to travel and travel business which helps the traveler experience what is authentic in the travel destination. But how can the traveler find those small authentic spots and organize them together to compose a vacation? E-business techniques, combined withTopic Maps, can help.

  15. Mapping the deep sea floor

    DEFF Research Database (Denmark)

    Nielsen, Kristian Hvidtfelt

    's attempt to "wave the Danish flag". The expedition was the first scientific expedition to have on board a separate press section communicating its scientific results as well as Danish nationality to the wider public. In this poster, the Galathea maps of the Philippine Trench are placed within this context...... of combined national "flag-waving", publicity, and scientific exploration....

  16. Spatiotemporal analysis of tropical disease research combining Europe PMC and affiliation mapping web services.

    Science.gov (United States)

    Palmblad, Magnus; Torvik, Vetle I

    2017-01-01

    Tropical medicine appeared as a distinct sub-discipline in the late nineteenth century, during a period of rapid European colonial expansion in Africa and Asia. After a dramatic drop after World War II, research on tropical diseases have received more attention and research funding in the twenty-first century. We used Apache Taverna to integrate Europe PMC and MapAffil web services, containing the spatiotemporal analysis workflow from a list of PubMed queries to a list of publication years and author affiliations geoparsed to latitudes and longitudes. The results could then be visualized in the Quantum Geographic Information System (QGIS). Our workflows automatically matched 253,277 affiliations to geographical coordinates for the first authors of 379,728 papers on tropical diseases in a single execution. The bibliometric analyses show how research output in tropical diseases follow major historical shifts in the twentieth century and renewed interest in and funding for tropical disease research in the twenty-first century. They show the effects of disease outbreaks, WHO eradication programs, vaccine developments, wars, refugee migrations, and peace treaties. Literature search and geoparsing web services can be combined in scientific workflows performing a complete spatiotemporal bibliometric analyses of research in tropical medicine. The workflows and datasets are freely available and can be used to reproduce or refine the analyses and test specific hypotheses or look into particular diseases or geographic regions. This work exceeds all previously published bibliometric analyses on tropical diseases in both scale and spatiotemporal range.

  17. High-resolution spatiotemporal mapping of PM2.5 concentrations at Mainland China using a combined BME-GWR technique

    Science.gov (United States)

    Xiao, Lu; Lang, Yichao; Christakos, George

    2018-01-01

    With rapid economic development, industrialization and urbanization, the ambient air PM2.5 has become a major pollutant linked to respiratory, heart and lung diseases. In China, PM2.5 pollution constitutes an extreme environmental and social problem of widespread public concern. In this work we estimate ground-level PM2.5 from satellite-derived aerosol optical depth (AOD), topography data, meteorological data, and pollutant emission using an integrative technique. In particular, Geographically Weighted Regression (GWR) analysis was combined with Bayesian Maximum Entropy (BME) theory to assess the spatiotemporal characteristics of PM2.5 exposure in a large region of China and generate informative PM2.5 space-time predictions (estimates). It was found that, due to its integrative character, the combined BME-GWR method offers certain improvements in the space-time prediction of PM2.5 concentrations over China compared to previous techniques. The combined BME-GWR technique generated realistic maps of space-time PM2.5 distribution, and its performance was superior to that of seven previous studies of satellite-derived PM2.5 concentrations in China in terms of prediction accuracy. The purely spatial GWR model can only be used at a fixed time, whereas the integrative BME-GWR approach accounts for cross space-time dependencies and can predict PM2.5 concentrations in the composite space-time domain. The 10-fold results of BME-GWR modeling (R2 = 0.883, RMSE = 11.39 μg /m3) demonstrated a high level of space-time PM2.5 prediction (estimation) accuracy over China, revealing a definite trend of severe PM2.5 levels from the northern coast toward inland China (Nov 2015-Feb 2016). Future work should focus on the addition of higher resolution AOD data, developing better satellite-based prediction models, and related air pollutants for space-time PM2.5 prediction purposes.

  18. Developing a mapping tool for tablets

    Science.gov (United States)

    Vaughan, Alan; Collins, Nathan; Krus, Mike

    2014-05-01

    Digital field mapping offers significant benefits when compared with traditional paper mapping techniques in that it provides closer integration with downstream geological modelling and analysis. It also provides the mapper with the ability to rapidly integrate new data with existing databases without the potential degradation caused by repeated manual transcription of numeric, graphical and meta-data. In order to achieve these benefits, a number of PC-based digital mapping tools are available which have been developed for specific communities, eg the BGS•SIGMA project, Midland Valley's FieldMove®, and a range of solutions based on ArcGIS® software, which can be combined with either traditional or digital orientation and data collection tools. However, with the now widespread availability of inexpensive tablets and smart phones, a user led demand for a fully integrated tablet mapping tool has arisen. This poster describes the development of a tablet-based mapping environment specifically designed for geologists. The challenge was to deliver a system that would feel sufficiently close to the flexibility of paper-based geological mapping while being implemented on a consumer communication and entertainment device. The first release of a tablet-based geological mapping system from this project is illustrated and will be shown as implemented on an iPad during the poster session. Midland Valley is pioneering tablet-based mapping and, along with its industrial and academic partners, will be using the application in field based projects throughout this year and will be integrating feedback in further developments of this technology.

  19. Combining norms to prove termination

    DEFF Research Database (Denmark)

    Genaim, S.; Codish, M.; Gallagher, John Patrick

    2002-01-01

    Automatic termination analysers typically measure the size of terms applying norms which are mappings from terms to the natural numbers. This paper illustrates howt o enable the use of size functions defined as tuples of these simpler norm functions. This approach enables us to simplify the probl...... of the recursive data-types in the program, is often a suitable choice. We first demonstrate the power of combining norm functions and then the adequacy of combining norms based on regular types....

  20. Single-molecule optical genome mapping of a human HapMap and a colorectal cancer cell line.

    Science.gov (United States)

    Teo, Audrey S M; Verzotto, Davide; Yao, Fei; Nagarajan, Niranjan; Hillmer, Axel M

    2015-01-01

    Next-generation sequencing (NGS) technologies have changed our understanding of the variability of the human genome. However, the identification of genome structural variations based on NGS approaches with read lengths of 35-300 bases remains a challenge. Single-molecule optical mapping technologies allow the analysis of DNA molecules of up to 2 Mb and as such are suitable for the identification of large-scale genome structural variations, and for de novo genome assemblies when combined with short-read NGS data. Here we present optical mapping data for two human genomes: the HapMap cell line GM12878 and the colorectal cancer cell line HCT116. High molecular weight DNA was obtained by embedding GM12878 and HCT116 cells, respectively, in agarose plugs, followed by DNA extraction under mild conditions. Genomic DNA was digested with KpnI and 310,000 and 296,000 DNA molecules (≥ 150 kb and 10 restriction fragments), respectively, were analyzed per cell line using the Argus optical mapping system. Maps were aligned to the human reference by OPTIMA, a new glocal alignment method. Genome coverage of 6.8× and 5.7× was obtained, respectively; 2.9× and 1.7× more than the coverage obtained with previously available software. Optical mapping allows the resolution of large-scale structural variations of the genome, and the scaffold extension of NGS-based de novo assemblies. OPTIMA is an efficient new alignment method; our optical mapping data provide a resource for genome structure analyses of the human HapMap reference cell line GM12878, and the colorectal cancer cell line HCT116.

  1. Logistic chaotic maps for binary numbers generations

    International Nuclear Information System (INIS)

    Kanso, Ali; Smaoui, Nejib

    2009-01-01

    Two pseudorandom binary sequence generators, based on logistic chaotic maps intended for stream cipher applications, are proposed. The first is based on a single one-dimensional logistic map which exhibits random, noise-like properties at given certain parameter values, and the second is based on a combination of two logistic maps. The encryption step proposed in both algorithms consists of a simple bitwise XOR operation of the plaintext binary sequence with the keystream binary sequence to produce the ciphertext binary sequence. A threshold function is applied to convert the floating-point iterates into binary form. Experimental results show that the produced sequences possess high linear complexity and very good statistical properties. The systems are put forward for security evaluation by the cryptographic committees.

  2. 3D Mapping for Urban and Regional Planning

    DEFF Research Database (Denmark)

    Bodum, Lars

    2002-01-01

    The process of mapping in 3D for urban and regional planning purposes is not an uncomplicated matter. It involves both the construction of a new data-model and new routines for the geometric modeling of the physical objects. This is due to the fact that most of the documentation until now has been...... registered and georeferenced to the 2D plan. This paper will outline a new method for 3D mapping where new LIDAR (laser-scanning) technology and additional 2D maps with attributes will be combined to create a 3D map of an urban area. The 3D map will afterwards be used in a real-time simulation system (also...... known as Virtual Reality system) for urban and regional planning purposes. This initiative will be implemented in a specific geographic region (North Jutland County in Denmark) by a new research centre at Aalborg University called Centre for 3D GeoInformation. The key question for this research team...

  3. Planck 2015 results. X. Diffuse component separation: Foreground maps

    CERN Document Server

    Adam, R.; Aghanim, N.; Alves, M.I.R.; Arnaud, M.; Ashdown, M.; Aumont, J.; Baccigalupi, C.; Banday, A.J.; Barreiro, R.B.; Bartlett, J.G.; Bartolo, N.; Battaner, E.; Benabed, K.; Benoît, A.; Benoit-Lévy, A.; Bernard, J.-P.; Bersanelli, M.; Bielewicz, P.; Bock, J.J.; Bonaldi, A.; Bonavera, L.; Bond, J.R.; Borrill, J.; Bouchet, F.R.; Boulanger, F.; Bucher, M.; Burigana, C.; Butler, R.C.; Calabrese, E.; Cardoso, J.-F.; Catalano, A.; Challinor, A.; Chamballu, A.; Chary, R.-R.; Chiang, H.C.; Christensen, P.R.; Clements, D.L.; Colombi, S.; Colombo, L.P.L.; Combet, C.; Couchot, F.; Coulais, A.; Crill, B.P.; Curto, A.; Cuttaia, F.; Danese, L.; Davies, R.D.; Davis, R.J.; de Bernardis, P.; de Rosa, A.; de Zotti, G.; Delabrouille, J.; Désert, F.-X.; Dickinson, C.; Diego, J.M.; Dole, H.; Donzelli, S.; Doré, O.; Douspis, M.; Ducout, A.; Dupac, X.; Efstathiou, G.; Elsner, F.; Enßlin, T.A.; Eriksen, H.K.; Falgarone, E.; Fergusson, J.; Finelli, F.; Forni, O.; Frailis, M.; Fraisse, A.A.; Franceschi, E.; Frejsel, A.; Galeotta, S.; Galli, S.; Ganga, K.; Ghosh, T.; Giard, M.; Giraud-Héraud, Y.; Gjerløw, E.; González-Nuevo, J.; Górski, K.M.; Gratton, S.; Gregorio, A.; Gruppuso, A.; Gudmundsson, J.E.; Hansen, F.K.; Hanson, D.; Harrison, D.L.; Helou, G.; Henrot-Versillé, S.; Hernández-Monteagudo, C.; Herranz, D.; Hildebrandt, S.R.; Hivon, E.; Hobson, M.; Holmes, W.A.; Hornstrup, A.; Hovest, W.; Huffenberger, K.M.; Hurier, G.; Jaffe, A.H.; Jaffe, T.R.; Jones, W.C.; Juvela, M.; Keihänen, E.; Keskitalo, R.; Kisner, T.S.; Kneissl, R.; Knoche, J.; Kunz, M.; Kurki-Suonio, H.; Lagache, G.; Lähteenmäki, A.; Lamarre, J.-M.; Lasenby, A.; Lattanzi, M.; Lawrence, C.R.; Le Jeune, M.; Leahy, J.P.; Leonardi, R.; Lesgourgues, J.; Levrier, F.; Liguori, M.; Lilje, P.B.; Linden-Vørnle, M.; López-Caniego, M.; Lubin, P.M.; Macías-Pérez, J.F.; Maggio, G.; Maino, D.; Mandolesi, N.; Mangilli, A.; Maris, M.; Marshall, D.J.; Martin, P.G.; Martínez-González, E.; Masi, S.; Matarrese, S.; Mazzotta, P.; McGehee, P.; Meinhold, P.R.; Melchiorri, A.; Mendes, L.; Mennella, A.; Migliaccio, M.; Mitra, S.; Miville-Deschênes, M.-A.; Moneti, A.; Montier, L.; Morgante, G.; Mortlock, D.; Moss, A.; Munshi, D.; Murphy, J.A.; Naselsky, P.; Nati, F.; Natoli, P.; Netterfield, C.B.; Nørgaard-Nielsen, H.U.; Noviello, F.; Novikov, D.; Novikov, I.; Orlando, E.; Oxborrow, C.A.; Paci, F.; Pagano, L.; Pajot, F.; Paladini, R.; Paoletti, D.; Partridge, B.; Pasian, F.; Patanchon, G.; Pearson, T.J.; Perdereau, O.; Perotto, L.; Perrotta, F.; Pettorino, V.; Piacentini, F.; Piat, M.; Pierpaoli, E.; Pietrobon, D.; Plaszczynski, S.; Pointecouteau, E.; Polenta, G.; Pratt, G.W.; Prézeau, G.; Prunet, S.; Puget, J.-L.; Rachen, J.P.; Reach, W.T.; Rebolo, R.; Reinecke, M.; Remazeilles, M.; Renault, C.; Renzi, A.; Ristorcelli, I.; Rocha, G.; Rosset, C.; Rossetti, M.; Roudier, G.; Rubiño-Martín, J.A.; Rusholme, B.; Sandri, M.; Santos, D.; Savelainen, M.; Savini, G.; Scott, D.; Seiffert, M.D.; Shellard, E.P.S.; Spencer, L.D.; Stolyarov, V.; Stompor, R.; Strong, A.W.; Sudiwala, R.; Sunyaev, R.; Sutton, D.; Suur-Uski, A.-S.; Sygnet, J.-F.; Tauber, J.A.; Terenzi, L.; Toffolatti, L.; Tomasi, M.; Tristram, M.; Tucci, M.; Tuovinen, J.; Umana, G.; Valenziano, L.; Valiviita, J.; Van Tent, B.; Vielva, P.; Villa, F.; Wade, L.A.; Wandelt, B.D.; Wehus, I.K.; Wilkinson, A.; Yvon, D.; Zacchei, A.

    2016-01-01

    Planck has mapped the microwave sky in nine frequency bands between 30 and 857 GHz in temperature and seven bands between 30 and 353 GHz in polarization. In this paper we consider the problem of diffuse astrophysical component separation, and process these maps within a Bayesian framework to derive a consistent set of full-sky astrophysical component maps. For the temperature analysis, we combine the Planck observations with the 9-year WMAP sky maps and the Haslam et al. 408 MHz map to derive a joint model of CMB, synchrotron, free-free, spinning dust, CO, line emission in the 94 and 100 GHz channels, and thermal dust emission. Full-sky maps are provided with angular resolutions varying between 7.5 arcmin and 1 deg. Global parameters (monopoles, dipoles, relative calibration, and bandpass errors) are fitted jointly with the sky model, and best-fit values are tabulated. For polarization, the model includes CMB, synchrotron, and thermal dust emission. These models provide excellent fits to the observed data, wi...

  4. Preliminary geologic map of the Lathrop Wells volcanic center

    International Nuclear Information System (INIS)

    Crowe, B.; Harrington, C.; McFadden, L.; Perry, F.; Wells, S.; Turrin, B.; Champion, D.

    1988-12-01

    A preliminary geologic map has been compiled for the bedrock geology of the Lathrop Wells volcanic center. The map was completed through use of a combination of stereo photographic interpretation and field mapping on color aerial photographs. These photographs (scale 1:4000) were obtained from American Aerial Surveys, Inc. They were flown on August 18, 1987, at the request of the Yucca Mountain Project (then Nevada Nuclear Waste Storage Investigations). The photographs are the Lathrop Wells VC-Area 25 series, numbers 1--32. The original negatives for these photographs are on file with American Aerial Surveys, Inc. Copies of the negatives have been archived at the Los Alamos National Laboratory, Group N-5. The preliminary geologic map is a bedrock geologic map. It does not show alluvial deposits, eolian sands, or scoria fall deposits from the youngest eruptive events. The units will be compiled on separate maps when the geomorphic and soils studies are more advanced

  5. Methods for geographical mapping of agricultural activities and the related environmental impact

    DEFF Research Database (Denmark)

    Dalgaard, Tommy; Jensen, Jørgen Dejgaard

    2011-01-01

    This study presents a three-step methodology to generate, map and simulate indicators of agricultural activity for use in landscape-scale analyses. Step one is the farm data set up combining digital agricultural registers and national statistics. Step two is the geographical mapping based discrete...

  6. National Fire Risk Map for Continental USA: Creation and Validation

    International Nuclear Information System (INIS)

    Zhang, Q; Wollersheim, M; Griffiths, S; Maddox, I

    2014-01-01

    A nation-wide fire risk map for the continental USA has been created based on a hybrid fire risk model, incorporating a combination of static risk indicators which change very slowly over time, and dynamic risk indicators that may vary significantly from week-to-week. Static risk indicators include: terrain elevation, terrain slope, terrain aspect, and distance from roads and settlements. Each of the static risk indicators are derived from Intermap's high-accuracy NEXTMap ® USA database. The dynamic risk indicators are derived from satellite-based multi-spectral imagery and provide a snapshot of the fuel-moisture conditions during fire seasons. Each of these risk indicators are combined to produce a map provided at 5m posting and normalized to the range of 0 (very low risk) and 255 (very high risk). The map has been validated in two selected areas using historical fire information

  7. A combined approach based on MAF analysis and AHP method to fault detection mapping: A case study from a gas field, southwest of Iran

    Science.gov (United States)

    Shakiba, Sima; Asghari, Omid; Khah, Nasser Keshavarz Faraj

    2018-01-01

    A combined geostatitical methodology based on Min/Max Auto-correlation Factor (MAF) analysis and Analytical Hierarchy Process (AHP) is presented to generate a suitable Fault Detection Map (FDM) through seismic attributes. Five seismic attributes derived from a 2D time slice obtained from data related to a gas field located in southwest of Iran are used including instantaneous amplitude, similarity, energy, frequency, and Fault Enhancement Filter (FEF). The MAF analysis is implemented to reduce dimension of input variables, and then AHP method is applied on three obtained de-correlated MAF factors as evidential layer. Three Decision Makers (DMs) are used to construct PCMs for determining weights of selected evidential layer. Finally, weights obtained by AHP were multiplied in normalized valued of each alternative (MAF layers) and the concluded weighted layers were integrated in order to prepare final FDM. Results proved that applying algorithm proposed in this study generate a map more acceptable than the each individual attribute and sharpen the non-surface discontinuities as well as enhancing continuity of detected faults.

  8. Topography of the complete corticopontine projection: From experiments to principal maps

    Directory of Open Access Journals (Sweden)

    Trygve B Leergaard

    2007-10-01

    Full Text Available The mammalian brain is characterized by orderly spatial distribution of its cellular components, commonly referred to as topographical organization. The topography of cortical and subcortical maps is thought to represent functional or computational properties. In the present investigation, we have studied map transformations and organizing principles in the projections from the cerebral cortex to the pontine nuclei, with emphasis on the mapping of the cortex as a whole onto the pontine nuclei. Following single or multiple axonal tracer injections into different cortical regions, three-dimensional (3-D distributions of anterogradely labeled axons in the pontine nuclei were mapped. All 3-D reconstructed data sets were normalized to a standardized local coordinate system for the pontine nuclei and uploaded in a database application (FACCS, Functional Anatomy of the Cerebro-Cerebellar System, available via The Rodent Brain Workbench, http://www.rbwb.org. The database application allowed flexible use of the data in novel combinations, and use of a previously published data sets. Visualization of different combinations of data was used to explore alternative principles of organization. As a result of these analyses, a principal map of the topography of corticopontine projections was developed. This map followed the organization of early spatiotemporal gradients present in the cerebral cortex and the pontine nuclei. With the principal map for corticopontine projections, a fairly accurate prediction of pontine target area can be made for any site of origin in the cerebral cortex. The map and the underlying shared data sets represent a basis for modeling of topographical organization and structure-function relationships in this system.

  9. A New Perceptual Mapping Model Using Lifting Wavelet Transform

    OpenAIRE

    Taha TahaBasheer; Ehkan Phaklen; Ngadiran Ruzelita

    2017-01-01

    Perceptual mappingapproaches have been widely used in visual information processing in multimedia and internet of things (IOT) applications. Accumulative Lifting Difference (ALD) is proposed in this paper as texture mapping model based on low-complexity lifting wavelet transform, and combined with luminance masking for creating an efficient perceptual mapping model to estimate Just Noticeable Distortion (JND) in digital images. In addition to low complexity operations, experiments results sho...

  10. a Model Study of Small-Scale World Map Generalization

    Science.gov (United States)

    Cheng, Y.; Yin, Y.; Li, C. M.; Wu, W.; Guo, P. P.; Ma, X. L.; Hu, F. M.

    2018-04-01

    With the globalization and rapid development every filed is taking an increasing interest in physical geography and human economics. There is a surging demand for small scale world map in large formats all over the world. Further study of automated mapping technology, especially the realization of small scale production on a large scale global map, is the key of the cartographic field need to solve. In light of this, this paper adopts the improved model (with the map and data separated) in the field of the mapmaking generalization, which can separate geographic data from mapping data from maps, mainly including cross-platform symbols and automatic map-making knowledge engine. With respect to the cross-platform symbol library, the symbol and the physical symbol in the geographic information are configured at all scale levels. With respect to automatic map-making knowledge engine consists 97 types, 1086 subtypes, 21845 basic algorithm and over 2500 relevant functional modules.In order to evaluate the accuracy and visual effect of our model towards topographic maps and thematic maps, we take the world map generalization in small scale as an example. After mapping generalization process, combining and simplifying the scattered islands make the map more explicit at 1 : 2.1 billion scale, and the map features more complete and accurate. Not only it enhance the map generalization of various scales significantly, but achieve the integration among map-makings of various scales, suggesting that this model provide a reference in cartographic generalization for various scales.

  11. Chromosome mapping by FISH to metaphase and interphase nuclei. Final report

    Energy Technology Data Exchange (ETDEWEB)

    Trask, B.

    1997-08-01

    The overall specific aims of this project were: (1) to determine the large-scale structure of interphase and metaphase chromosomes, in order to establish new capabilities for genome mapping by fluorescence in situ hybridization (FISH); (2) to detect chromosome abnormalities associated with genetic disease and map DNA sequences relative to them in order to facilitate the identification of new genes with disease-causing mutations; (3) to establish medium resolution physical maps of selected chromosomal regions using a combined metaphase and interphase mapping strategy and to corroborate physical and genetic maps and integrate these maps with the cytogenetic map; (4) to analyze the polymorphism and sequence evolution of subtelomeric regions of human chromosomes; (5) to establish a state-of-the-art FISH and image processing facility in the Department of Molecular Biotechnology, University of Washington, in order to map DNA sequences rapidly and accurately to benefit the Human Genome Project.

  12. Combined analysis of neutron and photon flux measurements for the Jules Horowitz reactor core mapping

    Energy Technology Data Exchange (ETDEWEB)

    Fourmentel, D.; Villard, J. F.; Lyoussi, A. [DEN Reactor Studies Dept., French Nuclear Energy and Alternative Energies Commission, CEA Cadarache, 13108 Saint Paul-Lez-Durance (France); Reynard-Carette, C. [Laboratoire Chimie Provence LCP UMR 6264, Univ. of Provence, Centre St. Jerome, 13397 Marseille Cedex 20 (France); Bignan, G.; Chauvin, J. P.; Gonnier, C.; Guimbal, P.; Malo, J. Y. [DEN Reactor Studies Dept., French Nuclear Energy and Alternative Energies Commission, CEA Cadarache, 13108 Saint Paul-Lez-Durance (France); Carette, M.; Janulyte, A.; Merroun, O.; Brun, J.; Zerega, Y.; Andre, J. [Laboratoire Chimie Provence LCP UMR 6264, Univ. of Provence, Centre St. Jerome, 13397 Marseille Cedex 20 (France)

    2011-07-01

    We study the combined analysis of nuclear measurements to improve the knowledge of the irradiation conditions in the experimental locations of the future Jules Horowitz Reactor (JHR). The goal of the present work is to measure more accurately neutron flux, photon flux and nuclear heating in the reactor. In a Material Testing Reactor (MTR), nuclear heating is a crucial parameter to design the experimental devices to be irradiated in harsh nuclear conditions. This parameter drives the temperature of the devices and of the samples. The numerical codes can predict this parameter but in-situ measurements are necessary to reach the expected accuracy. For this reason, one objective of the IN-CORE program [1] is to study the combined measurements of neutron and photon flux and their cross advanced interpretation. It should be reminded that both neutron and photon sensors are not totally selective as their signals are due to neutron and photon interactions. We intend to measure the neutron flux by three different kinds of sensors (Uranium Fission chamber, Plutonium Fission chamber and Self Powered Neutron Detector), the photon flux by two different sensors (Ionization chamber and Self Powered Gamma Detector) and the nuclear heating by two different ones (Differential calorimeter and Gamma Thermometer). For the same parameter, we expect that the use of different kinds of sensors will allow a better estimation of the aimed parameter by mixing different spectrum responses and different neutron and gamma contributions. An experimental test called CARMEN-1 is scheduled in OSIRIS reactor (CEA Saclay - France) at the end of 2011, with the goal to map irradiation locations in the reactor reflector to get a first validation of the analysis model. This article focuses on the sensor selection for CARMEN-1 experiment and to the way to link neutron and photon flux measurements in view to reduce their uncertainties but also to better assess the neutron and photon contributions to nuclear

  13. Combined analysis of neutron and photon flux measurements for the Jules Horowitz reactor core mapping

    International Nuclear Information System (INIS)

    Fourmentel, D.; Villard, J. F.; Lyoussi, A.; Reynard-Carette, C.; Bignan, G.; Chauvin, J. P.; Gonnier, C.; Guimbal, P.; Malo, J. Y.; Carette, M.; Janulyte, A.; Merroun, O.; Brun, J.; Zerega, Y.; Andre, J.

    2011-01-01

    We study the combined analysis of nuclear measurements to improve the knowledge of the irradiation conditions in the experimental locations of the future Jules Horowitz Reactor (JHR). The goal of the present work is to measure more accurately neutron flux, photon flux and nuclear heating in the reactor. In a Material Testing Reactor (MTR), nuclear heating is a crucial parameter to design the experimental devices to be irradiated in harsh nuclear conditions. This parameter drives the temperature of the devices and of the samples. The numerical codes can predict this parameter but in-situ measurements are necessary to reach the expected accuracy. For this reason, one objective of the IN-CORE program [1] is to study the combined measurements of neutron and photon flux and their cross advanced interpretation. It should be reminded that both neutron and photon sensors are not totally selective as their signals are due to neutron and photon interactions. We intend to measure the neutron flux by three different kinds of sensors (Uranium Fission chamber, Plutonium Fission chamber and Self Powered Neutron Detector), the photon flux by two different sensors (Ionization chamber and Self Powered Gamma Detector) and the nuclear heating by two different ones (Differential calorimeter and Gamma Thermometer). For the same parameter, we expect that the use of different kinds of sensors will allow a better estimation of the aimed parameter by mixing different spectrum responses and different neutron and gamma contributions. An experimental test called CARMEN-1 is scheduled in OSIRIS reactor (CEA Saclay - France) at the end of 2011, with the goal to map irradiation locations in the reactor reflector to get a first validation of the analysis model. This article focuses on the sensor selection for CARMEN-1 experiment and to the way to link neutron and photon flux measurements in view to reduce their uncertainties but also to better assess the neutron and photon contributions to nuclear

  14. A System of Generalized Variational Inclusions Involving a New Monotone Mapping in Banach Spaces

    Directory of Open Access Journals (Sweden)

    Jinlin Guan

    2013-01-01

    Full Text Available We introduce a new monotone mapping in Banach spaces, which is an extension of the -monotone mapping studied by Nazemi (2012, and we generalize the variational inclusion involving the -monotone mapping. Based on the new monotone mapping, we propose a new proximal mapping which combines the proximal mapping studied by Nazemi (2012 with the mapping studied by Lan et al. (2011 and show its Lipschitz continuity. Based on the new proximal mapping, we give an iterative algorithm. Furthermore, we prove the convergence of iterative sequences generated by the algorithm under some appropriate conditions. Our results improve and extend corresponding ones announced by many others.

  15. Dynamic Analysis of the Carotid-Kundalini Map

    Science.gov (United States)

    Wang, Xingyuan; Liang, Qingyong; Meng, Juan

    The nature of the fixed points of the Carotid-Kundalini (C-K) map was studied and the boundary equation of the first bifurcation of the C-K map in the parameter plane is presented. Using the quantitative criterion and rule of chaotic system, the paper reveals the general features of the C-K Map transforming from regularity to chaos. The following conclusions are obtained: (i) chaotic patterns of the C-K map may emerge out of double-periodic bifurcation; (ii) the chaotic crisis phenomena are found. At the same time, the authors analyzed the orbit of critical point of the complex C-K Map and put forward the definition of Mandelbrot-Julia set of the complex C-K Map. The authors generalized the Welstead and Cromer's periodic scanning technique and using this technology constructed a series of the Mandelbrot-Julia sets of the complex C-K Map. Based on the experimental mathematics method of combining the theory of analytic function of one complex variable with computer aided drawing, we investigated the symmetry of the Mandelbrot-Julia set and studied the topological inflexibility of distribution of the periodic region in the Mandelbrot set, and found that the Mandelbrot set contains abundant information of the structure of Julia sets by finding the whole portray of Julia sets based on Mandelbrot set qualitatively.

  16. Combined spatial prediction of schistosomiasis and soil-transmitted helminthiasis in Sierra Leone: a tool for integrated disease control.

    Directory of Open Access Journals (Sweden)

    Mary H Hodges

    Full Text Available BACKGROUND: A national mapping of Schistosoma haematobium was conducted in Sierra Leone before the mass drug administration (MDA with praziquantel. Together with the separate mapping of S. mansoni and soil-transmitted helminths, the national control programme was able to plan the MDA strategies according to the World Health Organization guidelines for preventive chemotherapy for these diseases. METHODOLOGY/PRINCIPAL FINDINGS: A total of 52 sites/schools were selected according to prior knowledge of S. haematobium endemicity taking into account a good spatial coverage within each district, and a total of 2293 children aged 9-14 years were examined. Spatial analysis showed that S. haematobium is heterogeneously distributed in the country with significant spatial clustering in the central and eastern regions of the country, most prevalent in Bo (24.6% and 8.79 eggs/10 ml, Koinadugu (20.4% and 3.53 eggs/10 ml and Kono (25.3% and 7.91 eggs/10 ml districts. By combining this map with the previously reported maps on intestinal schistosomiasis using a simple probabilistic model, the combined schistosomiasis prevalence map highlights the presence of high-risk communities in an extensive area in the northeastern half of the country. By further combining the hookworm prevalence map, the at-risk population of school-age children requiring integrated schistosomiasis/soil-transmitted helminth treatment regimens according to the coendemicity was estimated. CONCLUSIONS/SIGNIFICANCE: The first comprehensive national mapping of urogenital schistosomiasis in Sierra Leone was conducted. Using a new method for calculating the combined prevalence of schistosomiasis using estimates from two separate surveys, we provided a robust coendemicity mapping for overall urogenital and intestinal schistosomiasis. We also produced a coendemicity map of schistosomiasis and hookworm. These coendemicity maps can be used to guide the decision making for MDA strategies in combination

  17. Combined spatial prediction of schistosomiasis and soil-transmitted helminthiasis in Sierra Leone: a tool for integrated disease control.

    Science.gov (United States)

    Hodges, Mary H; Soares Magalhães, Ricardo J; Paye, Jusufu; Koroma, Joseph B; Sonnie, Mustapha; Clements, Archie; Zhang, Yaobi

    2012-01-01

    A national mapping of Schistosoma haematobium was conducted in Sierra Leone before the mass drug administration (MDA) with praziquantel. Together with the separate mapping of S. mansoni and soil-transmitted helminths, the national control programme was able to plan the MDA strategies according to the World Health Organization guidelines for preventive chemotherapy for these diseases. A total of 52 sites/schools were selected according to prior knowledge of S. haematobium endemicity taking into account a good spatial coverage within each district, and a total of 2293 children aged 9-14 years were examined. Spatial analysis showed that S. haematobium is heterogeneously distributed in the country with significant spatial clustering in the central and eastern regions of the country, most prevalent in Bo (24.6% and 8.79 eggs/10 ml), Koinadugu (20.4% and 3.53 eggs/10 ml) and Kono (25.3% and 7.91 eggs/10 ml) districts. By combining this map with the previously reported maps on intestinal schistosomiasis using a simple probabilistic model, the combined schistosomiasis prevalence map highlights the presence of high-risk communities in an extensive area in the northeastern half of the country. By further combining the hookworm prevalence map, the at-risk population of school-age children requiring integrated schistosomiasis/soil-transmitted helminth treatment regimens according to the coendemicity was estimated. The first comprehensive national mapping of urogenital schistosomiasis in Sierra Leone was conducted. Using a new method for calculating the combined prevalence of schistosomiasis using estimates from two separate surveys, we provided a robust coendemicity mapping for overall urogenital and intestinal schistosomiasis. We also produced a coendemicity map of schistosomiasis and hookworm. These coendemicity maps can be used to guide the decision making for MDA strategies in combination with the local knowledge and programme needs.

  18. GEOMETRIC CONTEXT AND ORIENTATION MAP COMBINATION FOR INDOOR CORRIDOR MODELING USING A SINGLE IMAGE

    Directory of Open Access Journals (Sweden)

    A. B. Jahromi

    2016-06-01

    Full Text Available Since people spend most of their time indoors, their indoor activities and related issues in health, security and energy consumption have to be understood. Hence, gathering and representing spatial information of indoor spaces in form of 3D models become very important. Considering the available data gathering techniques with respect to the sensors cost and data processing time, single images proved to be one of the reliable sources. Many of the current single image based indoor space modeling methods are defining the scene as a single box primitive. This domain-specific knowledge is usually not applicable in various cases where multiple corridors are joined at one scene. Here, we addressed this issue by hypothesizing-verifying multiple box primitives which represents the indoor corridor layout. Middle-level perceptual organization is the foundation of the proposed method, which relies on finding corridor layout boundaries using both detected line segments and virtual rays created by orthogonal vanishing points. Due to the presence of objects, shadows and occlusions, a comprehensive interpretation of the edge relations is often concealed. This necessitates the utilization of virtual rays to create a physically valid layout hypothesis. Many of the former methods used Orientation Map or Geometric Context to evaluate their proposed layout hypotheses. Orientation map is a map that reveals the local belief of region orientations computed from line segments, and in a segmented image geometric context uses color, texture, edge, and vanishing point cues to estimate the likelihood of each possible label for all super-pixels. Here, the created layout hypotheses are evaluated by an objective function which considers the fusion of orientation map and geometric context with respect to the horizontal viewing angle at each image pixel. Finally, the best indoor corridor layout hypothesis which gets the highest score from the scoring function will be selected

  19. Integrating pipeline data management application and Google maps dataset on web based GIS application unsing open source technology Sharp Map and Open Layers

    Energy Technology Data Exchange (ETDEWEB)

    Wisianto, Arie; Sania, Hidayatus [PT PERTAMINA GAS, Bontang (Indonesia); Gumilar, Oki [PT PERTAMINA GAS, Jakarta (Indonesia)

    2010-07-01

    PT Pertamina Gas operates 3 pipe segments carrying natural gas from producers to PT Pupuk Kaltim in the Kalimantan area. The company wants to build a pipeline data management system consisting of pipeline facilities, inspections and risk assessments which would run on Geographic Information Systems (GIS) platforms. The aim of this paper is to present the integration of the pipeline data management system with GIS. A web based GIS application is developed using the combination of Google maps datasets with local spatial datasets. In addition, Open Layers is used to integrate pipeline data model and Google Map dataset into a single map display on Sharp Map. The GIS based pipeline data management system developed herein constitutes a low cost, powerful and efficient web based GIS solution.

  20. Radarsat Antarctic Mapping Project Digital Elevation Model, Version 2

    Data.gov (United States)

    National Aeronautics and Space Administration — The high-resolution Radarsat Antarctic Mapping Project (RAMP) Digital Elevation Model (DEM) combines topographic data from a variety of sources to provide consistent...

  1. Forest Biomass Mapping From Lidar and Radar Synergies

    Science.gov (United States)

    Sun, Guoqing; Ranson, K. Jon; Guo, Z.; Zhang, Z.; Montesano, P.; Kimes, D.

    2011-01-01

    The use of lidar and radar instruments to measure forest structure attributes such as height and biomass at global scales is being considered for a future Earth Observation satellite mission, DESDynI (Deformation, Ecosystem Structure, and Dynamics of Ice). Large footprint lidar makes a direct measurement of the heights of scatterers in the illuminated footprint and can yield accurate information about the vertical profile of the canopy within lidar footprint samples. Synthetic Aperture Radar (SAR) is known to sense the canopy volume, especially at longer wavelengths and provides image data. Methods for biomass mapping by a combination of lidar sampling and radar mapping need to be developed. In this study, several issues in this respect were investigated using aircraft borne lidar and SAR data in Howland, Maine, USA. The stepwise regression selected the height indices rh50 and rh75 of the Laser Vegetation Imaging Sensor (LVIS) data for predicting field measured biomass with a R(exp 2) of 0.71 and RMSE of 31.33 Mg/ha. The above-ground biomass map generated from this regression model was considered to represent the true biomass of the area and used as a reference map since no better biomass map exists for the area. Random samples were taken from the biomass map and the correlation between the sampled biomass and co-located SAR signature was studied. The best models were used to extend the biomass from lidar samples into all forested areas in the study area, which mimics a procedure that could be used for the future DESDYnI Mission. It was found that depending on the data types used (quad-pol or dual-pol) the SAR data can predict the lidar biomass samples with R2 of 0.63-0.71, RMSE of 32.0-28.2 Mg/ha up to biomass levels of 200-250 Mg/ha. The mean biomass of the study area calculated from the biomass maps generated by lidar- SAR synergy 63 was within 10% of the reference biomass map derived from LVIS data. The results from this study are preliminary, but do show the

  2. Combining Human and Machine Learning to Map Cropland in the 21st Century's Major Agricultural Frontier

    Science.gov (United States)

    Estes, L. D.; Debats, S. R.; Caylor, K. K.; Evans, T. P.; Gower, D.; McRitchie, D.; Searchinger, T.; Thompson, D. R.; Wood, E. F.; Zeng, L.

    2016-12-01

    In the coming decades, large areas of new cropland will be created to meet the world's rapidly growing food demands. Much of this new cropland will be in sub-Saharan Africa, where food needs will increase most and the area of remaining potential farmland is greatest. If we are to understand the impacts of global change, it is critical to accurately identify Africa's existing croplands and how they are changing. Yet the continent's smallholder-dominated agricultural systems are unusually challenging for remote sensing analyses, making accurate area estimates difficult to obtain, let alone important details related to field size and geometry. Fortunately, the rapidly growing archives of moderate to high-resolution satellite imagery hosted on open servers now offer an unprecedented opportunity to improve landcover maps. We present a system that integrates two critical components needed to capitalize on this opportunity: 1) human image interpretation and 2) machine learning (ML). Human judgment is needed to accurately delineate training sites within noisy imagery and a highly variable cover type, while ML provides the ability to scale and to interpret large feature spaces that defy human comprehension. Because large amounts of training data are needed (a major impediment for analysts), we use a crowdsourcing platform that connects amazon.com's Mechanical Turk service to satellite imagery hosted on open image servers. Workers map visible fields at pre-assigned sites, and are paid according to their mapping accuracy. Initial tests show overall high map accuracy and mapping rates >1800 km2/hour. The ML classifier uses random forests and randomized quasi-exhaustive feature selection, and is highly effective in classifying diverse agricultural types in southern Africa (AUC > 0.9). We connect the ML and crowdsourcing components to make an interactive learning framework. The ML algorithm performs an initial classification using a first batch of crowd-sourced maps, using

  3. Content Layer progressive Coding of Digital Maps

    DEFF Research Database (Denmark)

    Forchhammer, Søren; Jensen, Ole Riis

    2002-01-01

    A new lossless context based method is presented for content progressive coding of limited bits/pixel images, such as maps, company logos, etc., common on the World Wide Web. Progressive encoding is achieved by encoding the image in content layers based on color level or other predefined...... information. Information from already coded layers are used when coding subsequent layers. This approach is combined with efficient template based context bilevel coding, context collapsing methods for multilevel images and arithmetic coding. Relative pixel patterns are used to collapse contexts. Expressions...... for calculating the resulting number of contexts are given. The new methods outperform existing schemes coding digital maps and in addition provide progressive coding. Compared to the state-of-the-art PWC coder, the compressed size is reduced to 50-70% on our layered map test images....

  4. A fast image encryption algorithm based on chaotic map

    Science.gov (United States)

    Liu, Wenhao; Sun, Kehui; Zhu, Congxu

    2016-09-01

    Derived from Sine map and iterative chaotic map with infinite collapse (ICMIC), a new two-dimensional Sine ICMIC modulation map (2D-SIMM) is proposed based on a close-loop modulation coupling (CMC) model, and its chaotic performance is analyzed by means of phase diagram, Lyapunov exponent spectrum and complexity. It shows that this map has good ergodicity, hyperchaotic behavior, large maximum Lyapunov exponent and high complexity. Based on this map, a fast image encryption algorithm is proposed. In this algorithm, the confusion and diffusion processes are combined for one stage. Chaotic shift transform (CST) is proposed to efficiently change the image pixel positions, and the row and column substitutions are applied to scramble the pixel values simultaneously. The simulation and analysis results show that this algorithm has high security, low time complexity, and the abilities of resisting statistical analysis, differential, brute-force, known-plaintext and chosen-plaintext attacks.

  5. Putting Portugal on the Map

    Directory of Open Access Journals (Sweden)

    João Ferrão

    2010-01-01

    Full Text Available This paper argues the need to “put Portugal on the map” in a double sense: in a prospective way, in order to place the country on the required map(s, something which entails strategic vision and capacity for action; and in an analytical way – to enable us to understand Portugal from the map(s it is part of, which presupposes a capacity to analyse and understand the current state of affairs. By drawing inspiration from the polymorphic vision on the spatialities of contemporary societies and economies defended by Jessop, Brenner and Jones (2008, we propose the creation of a unifying reference framework to “put Portugal on the map”, using a combination of five elements: territory as a geographic location; territory as a unit of reference of the nation-state; places; geographic scales; and networks. The polymorphic nature of the spatialities that characterize, or should characterize, Portugal’s place in the world reflects several, and even contradictory, ethical values, interests, preferences, and options. Accordingly, the supported polymorphic spatialities ought to stir up controversy based on knowledge and arguments that are solid from a theoretical and empirical stance, and should make explicit the objectives and values they are based on.

  6. Cowichan Valley energy mapping and modelling. Report 5 - Energy density mapping projections. Final report. [Vancouver Island, Canada

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    2012-06-15

    The driving force behind the Integrated Energy Mapping and Analysis project was the identification and analysis of a suite of pathways that the Cowichan Valley Regional District (CVRD) can utilise to increase its energy resilience, as well as reduce energy consumption and GHG emissions, with a primary focus on the residential sector. Mapping and analysis undertaken will support provincial energy and GHG reduction targets, and the suite of pathways outlined will address a CVRD internal target that calls for 75% of the region's energy within the residential sector to come from locally sourced renewables by 2050. The target has been developed as a mechanism to meet resilience and climate action target. The maps and findings produced are to be integrated as part of a regional policy framework currently under development. Task 5 focused on energy projection mapping to estimate and visualise the energy consumption density and GHG emissions under different scenarios. The scenarios from task 4 were built around the energy consumption density of the residential sector under future land use patterns and rely on different energy source combinations (the suite of pathways). In task 5 the energy usage under the different scenarios were fed back into GIS, thereby giving a visual representation of forecasted residential energy consumption per unit area. The methodology is identical to that used in task 2 where current usage was mapped, whereas the mapping in this task is for future forecasts. These results are documented in this report. In addition, GHG mapping under the various scenarios was also undertaken. (LN)

  7. Classifying the Diversity of Bus Mapping Systems

    Science.gov (United States)

    Said, Mohd Shahmy Mohd; Forrest, David

    2018-05-01

    This study represents the first stage of an investigation into understanding the nature of different approaches to mapping bus routes and bus network, and how they may best be applied in different public transport situations. In many cities, bus services represent an important facet of easing traffic congestion and reducing pollution. However, with the entrenched car culture in many countries, persuading people to change their mode of transport is a major challenge. To promote this modal shift, people need to know what services are available and where (and when) they go. Bus service maps provide an invaluable element of providing suitable public transport information, but are often overlooked by transport planners, and are under-researched by cartographers. The method here consists of the creation of a map evaluation form and performing assessment of published bus networks maps. The analyses were completed by a combination of quantitative and qualitative data analysis of various aspects of cartographic design and classification. This paper focuses on the resulting classification, which is illustrated by a series of examples. This classification will facilitate more in depth investigations into the details of cartographic design for such maps and help direct areas for user evaluation.

  8. A case study for the integration of predictive mineral potential maps

    Science.gov (United States)

    Lee, Saro; Oh, Hyun-Joo; Heo, Chul-Ho; Park, Inhye

    2014-09-01

    This study aims to elaborate on the mineral potential maps using various models and verify the accuracy for the epithermal gold (Au) — silver (Ag) deposits in a Geographic Information System (GIS) environment assuming that all deposits shared a common genesis. The maps of potential Au and Ag deposits were produced by geological data in Taebaeksan mineralized area, Korea. The methodological framework consists of three main steps: 1) identification of spatial relationships 2) quantification of such relationships and 3) combination of multiple quantified relationships. A spatial database containing 46 Au-Ag deposits was constructed using GIS. The spatial association between training deposits and 26 related factors were identified and quantified by probabilistic and statistical modelling. The mineral potential maps were generated by integrating all factors using the overlay method and recombined afterwards using the likelihood ratio model. They were verified by comparison with test mineral deposit locations. The verification revealed that the combined mineral potential map had the greatest accuracy (83.97%), whereas it was 72.24%, 65.85%, 72.23% and 71.02% for the likelihood ratio, weight of evidence, logistic regression and artificial neural network models, respectively. The mineral potential map can provide useful information for the mineral resource development.

  9. MPEG-4 AVC saliency map computation

    Science.gov (United States)

    Ammar, M.; Mitrea, M.; Hasnaoui, M.

    2014-02-01

    A saliency map provides information about the regions inside some visual content (image, video, ...) at which a human observer will spontaneously look at. For saliency maps computation, current research studies consider the uncompressed (pixel) representation of the visual content and extract various types of information (intensity, color, orientation, motion energy) which are then fusioned. This paper goes one step further and computes the saliency map directly from the MPEG-4 AVC stream syntax elements with minimal decoding operations. In this respect, an a-priori in-depth study on the MPEG-4 AVC syntax elements is first carried out so as to identify the entities appealing the visual attention. Secondly, the MPEG-4 AVC reference software is completed with software tools allowing the parsing of these elements and their subsequent usage in objective benchmarking experiments. This way, it is demonstrated that an MPEG-4 saliency map can be given by a combination of static saliency and motion maps. This saliency map is experimentally validated under a robust watermarking framework. When included in an m-QIM (multiple symbols Quantization Index Modulation) insertion method, PSNR average gains of 2.43 dB, 2.15dB, and 2.37 dB are obtained for data payload of 10, 20 and 30 watermarked blocks per I frame, i.e. about 30, 60, and 90 bits/second, respectively. These quantitative results are obtained out of processing 2 hours of heterogeneous video content.

  10. Mapping brain structure and function: cellular resolution, global perspective.

    Science.gov (United States)

    Zupanc, Günther K H

    2017-04-01

    A comprehensive understanding of the brain requires analysis, although from a global perspective, with cellular, and even subcellular, resolution. An important step towards this goal involves the establishment of three-dimensional high-resolution brain maps, incorporating brain-wide information about the cells and their connections, as well as the chemical architecture. The progress made in such anatomical brain mapping in recent years has been paralleled by the development of physiological techniques that enable investigators to generate global neural activity maps, also with cellular resolution, while simultaneously recording the organism's behavioral activity. Combination of the high-resolution anatomical and physiological maps, followed by theoretical systems analysis of the deduced network, will offer unprecedented opportunities for a better understanding of how the brain, as a whole, processes sensory information and generates behavior.

  11. Geologic map of metallic and nonmetallic mineral deposits, Badakhshan Province, Afghanistan, modified from the 1967 original map compilation of G.G. Semenov and others

    Science.gov (United States)

    Peters, Stephen G.; Stettner, Will R.; Mathieux, Donald P.; Masonic, Linda M.; Moran, Thomas W.

    2014-01-01

    This geologic map of central Badakhshan Province, Afghanistan, is a combined, redrafted, and modified version of the Geological map of central Badakhshan, scale 1:200,000 (sheet 217), and Map of minerals of central Badakhshan, scale 1:200,000 (also sheet 217) from Semenov and others (1967) (Soviet report no. R0815). That unpublished Soviet report contains the original maps and cross sections, which were prepared in cooperation with the Ministry of Mines and Industries of the Republic of Afghanistan in 1967 under contract no. 1378 (Technoexport, USSR). This USGS publication also includes the gold metallogeny summarized in Abdullah and others (1977) and Peters and others (2007, 2011), and additional compilations from Guguev and others (1967).

  12. Global mapping of transposon location.

    Directory of Open Access Journals (Sweden)

    Abram Gabriel

    2006-12-01

    Full Text Available Transposable genetic elements are ubiquitous, yet their presence or absence at any given position within a genome can vary between individual cells, tissues, or strains. Transposable elements have profound impacts on host genomes by altering gene expression, assisting in genomic rearrangements, causing insertional mutations, and serving as sources of phenotypic variation. Characterizing a genome's full complement of transposons requires whole genome sequencing, precluding simple studies of the impact of transposition on interindividual variation. Here, we describe a global mapping approach for identifying transposon locations in any genome, using a combination of transposon-specific DNA extraction and microarray-based comparative hybridization analysis. We use this approach to map the repertoire of endogenous transposons in different laboratory strains of Saccharomyces cerevisiae and demonstrate that transposons are a source of extensive genomic variation. We also apply this method to mapping bacterial transposon insertion sites in a yeast genomic library. This unique whole genome view of transposon location will facilitate our exploration of transposon dynamics, as well as defining bases for individual differences and adaptive potential.

  13. Salient Region Detection via Feature Combination and Discriminative Classifier

    Directory of Open Access Journals (Sweden)

    Deming Kong

    2015-01-01

    Full Text Available We introduce a novel approach to detect salient regions of an image via feature combination and discriminative classifier. Our method, which is based on hierarchical image abstraction, uses the logistic regression approach to map the regional feature vector to a saliency score. Four saliency cues are used in our approach, including color contrast in a global context, center-boundary priors, spatially compact color distribution, and objectness, which is as an atomic feature of segmented region in the image. By mapping a four-dimensional regional feature to fifteen-dimensional feature vector, we can linearly separate the salient regions from the clustered background by finding an optimal linear combination of feature coefficients in the fifteen-dimensional feature space and finally fuse the saliency maps across multiple levels. Furthermore, we introduce the weighted salient image center into our saliency analysis task. Extensive experiments on two large benchmark datasets show that the proposed approach achieves the best performance over several state-of-the-art approaches.

  14. The correlation of the results of capacitance mapping and of sheet resistance mapping in semi-insulating 6H-SiC

    International Nuclear Information System (INIS)

    Lin Shenghuang; Chen Zhiming; Liang Peng; Jiang Dong; Xie Huajie; Yang Ying

    2010-01-01

    A combination of complex surface capacitance mapping and sheet resistance mapping is applied to establish the origin of resistance variations on semi-insulating (SI) 6H-SiC substrates. The direct correlation between the capacitance quadrature and the sheet resistance is found in vanadium-doped SI samples. Regions with low capacitance quadrature show high sheet resistance. This indicates, associated with the nonhomogeneity of sheet resistance on the substrate, that the quality of crystallization is not good enough, which also leads to resistivity nonhomogeneity when comparing with different types of deep defects. According to the capacitance mapping, the region with bad crystallization quality has a high radio absorption coefficient. Another correlation is established between the capacitance in-phase and sheet resistance for the vanadium-doped sample. In this sample, the capacitance in-phase map shows not only the surface topography, but also the same distribution trend as the sheet resistance, namely, regions of high capacitance in-phase reveal high sheet resistance.

  15. Japanese Mapping of Asia-Pacific Areas, 1873-1945: An Overview

    Directory of Open Access Journals (Sweden)

    Shigeru Kobayashi

    2012-03-01

    Full Text Available Japanese mapping in the Asia-Pacific region up to 1945 calls for scrutiny, because its development was a multifaceted process with military, administrative, political, and cultural dimensions. This article traces the changes in Japanese mapping of overseas areas to the end of World War II and assesses the significance of the resulting maps, called gaihōzu, as sources for East Asian history. As implements of military operation and colonial administration, the gaihōzu were produced during a protracted period by various means under changing circumstances. Expanding military activity also promoted differentiation among the gaihōzu by increasing the use of maps originally produced in foreign countries. In conclusion, the need for detailed cataloging, in combination with chronologically arranged index mapping, is emphasized for the systematic use of the gaihōzu.

  16. BAC-HAPPY mapping (BAP mapping: a new and efficient protocol for physical mapping.

    Directory of Open Access Journals (Sweden)

    Giang T H Vu

    2010-02-01

    Full Text Available Physical and linkage mapping underpin efforts to sequence and characterize the genomes of eukaryotic organisms by providing a skeleton framework for whole genome assembly. Hitherto, linkage and physical "contig" maps were generated independently prior to merging. Here, we develop a new and easy method, BAC HAPPY MAPPING (BAP mapping, that utilizes BAC library pools as a HAPPY mapping panel together with an Mbp-sized DNA panel to integrate the linkage and physical mapping efforts into one pipeline. Using Arabidopsis thaliana as an exemplar, a set of 40 Sequence Tagged Site (STS markers spanning approximately 10% of chromosome 4 were simultaneously assembled onto a BAP map compiled using both a series of BAC pools each comprising 0.7x genome coverage and dilute (0.7x genome samples of sheared genomic DNA. The resultant BAP map overcomes the need for polymorphic loci to separate genetic loci by recombination and allows physical mapping in segments of suppressed recombination that are difficult to analyze using traditional mapping techniques. Even virtual "BAC-HAPPY-mapping" to convert BAC landing data into BAC linkage contigs is possible.

  17. Developing scholarly thinking using mind maps in graduate nursing education.

    Science.gov (United States)

    Kotcherlakota, Suhasini; Zimmerman, Lani; Berger, Ann M

    2013-01-01

    Two broad issues that beginning graduate nursing students face are identifying a research focus and learning how to organize complex information. Developing a mind map is 1 strategy to help students clarify their thinking and lay the foundation for in-depth expertise related to their research focus, review of the literature, and conceptual framework. The authors discuss their use of mind mapping combined with feedback using a fishbowl technique.

  18. Identification of p38α MAP kinase inhibitors by pharmacophore based virtual screening

    DEFF Research Database (Denmark)

    Gangwal, Rahul P; Das, Nihar R; Thanki, Kaushik

    2014-01-01

    The p38α mitogen-activated protein (MAP) kinase plays a vital role in treating many inflammatory diseases. In the present study, a combined ligand and structure based pharmacophore model was developed to identify potential DFG-in selective p38 MAP kinase inhibitors. Conformations of co...

  19. A fruit quality gene map of Prunus

    Directory of Open Access Journals (Sweden)

    Bliss Fredrick A

    2009-12-01

    Full Text Available Abstract Background Prunus fruit development, growth, ripening, and senescence includes major biochemical and sensory changes in texture, color, and flavor. The genetic dissection of these complex processes has important applications in crop improvement, to facilitate maximizing and maintaining stone fruit quality from production and processing through to marketing and consumption. Here we present an integrated fruit quality gene map of Prunus containing 133 genes putatively involved in the determination of fruit texture, pigmentation, flavor, and chilling injury resistance. Results A genetic linkage map of 211 markers was constructed for an intraspecific peach (Prunus persica progeny population, Pop-DG, derived from a canning peach cultivar 'Dr. Davis' and a fresh market cultivar 'Georgia Belle'. The Pop-DG map covered 818 cM of the peach genome and included three morphological markers, 11 ripening candidate genes, 13 cold-responsive genes, 21 novel EST-SSRs from the ChillPeach database, 58 previously reported SSRs, 40 RAFs, 23 SRAPs, 14 IMAs, and 28 accessory markers from candidate gene amplification. The Pop-DG map was co-linear with the Prunus reference T × E map, with 39 SSR markers in common to align the maps. A further 158 markers were bin-mapped to the reference map: 59 ripening candidate genes, 50 cold-responsive genes, and 50 novel EST-SSRs from ChillPeach, with deduced locations in Pop-DG via comparative mapping. Several candidate genes and EST-SSRs co-located with previously reported major trait loci and quantitative trait loci for chilling injury symptoms in Pop-DG. Conclusion The candidate gene approach combined with bin-mapping and availability of a community-recognized reference genetic map provides an efficient means of locating genes of interest in a target genome. We highlight the co-localization of fruit quality candidate genes with previously reported fruit quality QTLs. The fruit quality gene map developed here is a

  20. Projection Mapping User Interface for Disabled People.

    Science.gov (United States)

    Gelšvartas, Julius; Simutis, Rimvydas; Maskeliūnas, Rytis

    2018-01-01

    Difficulty in communicating is one of the key challenges for people suffering from severe motor and speech disabilities. Often such person can communicate and interact with the environment only using assistive technologies. This paper presents a multifunctional user interface designed to improve communication efficiency and person independence. The main component of this interface is a projection mapping technique used to highlight objects in the environment. Projection mapping makes it possible to create a natural augmented reality information presentation method. The user interface combines a depth sensor and a projector to create camera-projector system. We provide a detailed description of camera-projector system calibration procedure. The described system performs tabletop object detection and automatic projection mapping. Multiple user input modalities have been integrated into the multifunctional user interface. Such system can be adapted to the needs of people with various disabilities.

  1. Projection Mapping User Interface for Disabled People

    Science.gov (United States)

    Simutis, Rimvydas; Maskeliūnas, Rytis

    2018-01-01

    Difficulty in communicating is one of the key challenges for people suffering from severe motor and speech disabilities. Often such person can communicate and interact with the environment only using assistive technologies. This paper presents a multifunctional user interface designed to improve communication efficiency and person independence. The main component of this interface is a projection mapping technique used to highlight objects in the environment. Projection mapping makes it possible to create a natural augmented reality information presentation method. The user interface combines a depth sensor and a projector to create camera-projector system. We provide a detailed description of camera-projector system calibration procedure. The described system performs tabletop object detection and automatic projection mapping. Multiple user input modalities have been integrated into the multifunctional user interface. Such system can be adapted to the needs of people with various disabilities. PMID:29686827

  2. Digital Subtraction Angiography (DSA) "Road Map": An Angiographic Tool

    Science.gov (United States)

    Turski, P. A.; Stieghorst, M. F.; Strother, C. M.; Crummy, A. B.; Lieberman, R. P.; Mistretta, C. A.

    1982-12-01

    Continuous Digital subtraction combined with intraarterial injections of contrast medium permits the display of arterial structures during real time fluoroscopy. This DSA "road map" facilitates selective catheterization and has proved useful in interventional procedures.

  3. Diffusion parameter mapping with the combined intravoxel incoherent motion and kurtosis model using artificial neural networks at 3 T.

    Science.gov (United States)

    Bertleff, Marco; Domsch, Sebastian; Weingärtner, Sebastian; Zapp, Jascha; O'Brien, Kieran; Barth, Markus; Schad, Lothar R

    2017-12-01

    Artificial neural networks (ANNs) were used for voxel-wise parameter estimation with the combined intravoxel incoherent motion (IVIM) and kurtosis model facilitating robust diffusion parameter mapping in the human brain. The proposed ANN approach was compared with conventional least-squares regression (LSR) and state-of-the-art multi-step fitting (LSR-MS) in Monte-Carlo simulations and in vivo in terms of estimation accuracy and precision, number of outliers and sensitivity in the distinction between grey (GM) and white (WM) matter. Both the proposed ANN approach and LSR-MS yielded visually increased parameter map quality. Estimations of all parameters (perfusion fraction f, diffusion coefficient D, pseudo-diffusion coefficient D*, kurtosis K) were in good agreement with the literature using ANN, whereas LSR-MS resulted in D* overestimation and LSR yielded increased values for f and D*, as well as decreased values for K. Using ANN, outliers were reduced for the parameters f (ANN, 1%; LSR-MS, 19%; LSR, 8%), D* (ANN, 21%; LSR-MS, 25%; LSR, 23%) and K (ANN, 0%; LSR-MS, 0%; LSR, 15%). Moreover, ANN enabled significant distinction between GM and WM based on all parameters, whereas LSR facilitated this distinction only based on D and LSR-MS on f, D and K. Overall, the proposed ANN approach was found to be superior to conventional LSR, posing a powerful alternative to the state-of-the-art method LSR-MS with several advantages in the estimation of IVIM-kurtosis parameters, which might facilitate increased applicability of enhanced diffusion models at clinical scan times. Copyright © 2017 John Wiley & Sons, Ltd.

  4. Genome-wide mapping of DNA strand breaks.

    Directory of Open Access Journals (Sweden)

    Frédéric Leduc

    Full Text Available Determination of cellular DNA damage has so far been limited to global assessment of genome integrity whereas nucleotide-level mapping has been restricted to specific loci by the use of specific primers. Therefore, only limited DNA sequences can be studied and novel regions of genomic instability can hardly be discovered. Using a well-characterized yeast model, we describe a straightforward strategy to map genome-wide DNA strand breaks without compromising nucleotide-level resolution. This technique, termed "damaged DNA immunoprecipitation" (dDIP, uses immunoprecipitation and the terminal deoxynucleotidyl transferase-mediated dUTP-biotin end-labeling (TUNEL to capture DNA at break sites. When used in combination with microarray or next-generation sequencing technologies, dDIP will allow researchers to map genome-wide DNA strand breaks as well as other types of DNA damage and to establish a clear profiling of altered genes and/or intergenic sequences in various experimental conditions. This mapping technique could find several applications for instance in the study of aging, genotoxic drug screening, cancer, meiosis, radiation and oxidative DNA damage.

  5. Solar resources and power potential mapping in Vietnam using satellite-derived and GIS-based information

    International Nuclear Information System (INIS)

    Polo, J.; Bernardos, A.; Navarro, A.A.; Fernandez-Peruchena, C.M.; Ramírez, L.; Guisado, María V.; Martínez, S.

    2015-01-01

    Highlights: • Satellite-based, reanalysis data and measurements are combined for solar mapping. • Plant output modeling for PV and CSP results in simple expressions of solar potential. • Solar resource, solar potential are used in a GIS for determine technical solar potential. • Solar resource and potential maps of Vietnam are presented. - Abstract: The present paper presents maps of the solar resources in Vietnam and of the solar potential for concentrating solar power (CSP) and for grid-connected photovoltaic (PV) technology. The mapping of solar radiation components has been calculated from satellite-derived data combined with solar radiation derived from sunshine duration and other additional sources of information based on reanalysis for several atmospheric and meteorological parameters involved. Two scenarios have been selected for the study of the solar potential: CSP Parabolic Trough of 50 MWe and grid-connected Flat Plate PV plant of around 1 MWe. For each selected scenario plant performance simulations have been computed for developing simple expressions that allow the estimation of the solar potential from the annual solar irradiation and the latitude of every site in Vietnam. Finally, Geographic Information Systems (GIS) have been used for combining the solar potential with the land availability according each scenario to deliver the technical solar potential maps of Vietnam

  6. Three-dimensional mapping of the local interstellar medium with composite data

    Science.gov (United States)

    Capitanio, L.; Lallement, R.; Vergely, J. L.; Elyajouri, M.; Monreal-Ibero, A.

    2017-10-01

    Context. Three-dimensional maps of the Galactic interstellar medium are general astrophysical tools. Reddening maps may be based on the inversion of color excess measurements for individual target stars or on statistical methods using stellar surveys. Three-dimensional maps based on diffuse interstellar bands (DIBs) have also been produced. All methods benefit from the advent of massive surveys and may benefit from Gaia data. Aims: All of the various methods and databases have their own advantages and limitations. Here we present a first attempt to combine different datasets and methods to improve the local maps. Methods: We first updated our previous local dust maps based on a regularized Bayesian inversion of individual color excess data by replacing Hipparcos or photometric distances with Gaia Data Release 1 values when available. Secondly, we complemented this database with a series of ≃5000 color excess values estimated from the strength of the λ15273 DIB toward stars possessing a Gaia parallax. The DIB strengths were extracted from SDSS/APOGEE spectra. Third, we computed a low-resolution map based on a grid of Pan-STARRS reddening measurements by means of a new hierarchical technique and used this map as the prior distribution during the inversion of the two other datasets. Results: The use of Gaia parallaxes introduces significant changes in some areas and globally increases the compactness of the structures. Additional DIB-based data make it possible to assign distances to clouds located behind closer opaque structures and do not introduce contradictory information for the close structures. A more realistic prior distribution instead of a plane-parallel homogeneous distribution helps better define the structures. We validated the results through comparisons with other maps and with soft X-ray data. Conclusions: Our study demonstrates that the combination of various tracers is a potential tool for more accurate maps. An online tool makes it possible to

  7. Mapping biomass for a northern forest ecosystem using multi-frequency SAR data

    Science.gov (United States)

    Ranson, K. J.; Sun, Guoqing

    1992-01-01

    Image processing methods for mapping standing biomass for a forest in Maine, using NASA/JPL airborne synthetic aperture radar (AIRSAR) polarimeter data, are presented. By examining the dependence of backscattering on standing biomass, it is determined that the ratio of HV backscattering from a longer wavelength (P- or L-band) to a shorter wavelength (C) is a good combination for mapping total biomass. This ratio enhances the correlation of the image signature to the standing biomass and compensates for a major part of the variations in backscattering attributed to radar incidence angle. The image processing methods used include image calibration, ratioing, filtering, and segmentation. The image segmentation algorithm uses both means and variances of the image, and it is combined with the image filtering process. Preliminary assessment of the resultant biomass maps suggests that this is a promising method.

  8. Lidar-revised geologic map of the Poverty Bay 7.5' quadrangle, King and Pierce Counties, Washington

    Science.gov (United States)

    Tabor, Rowland W.; Booth, Derek B.; Troost, Kathy Goetz

    2014-01-01

    For this map, we interpreted a 6-ft-resolution lidar digital elevation model combined with the geology depicted on the Geologic Map of the Poverty Bay 7.5' Quadrangle, King and Pierce Counties, Washington (Booth and others, 2004b). The authors of the 2004 map described, interpreted, and located the geology on the 1:24,000-scale topographic map of the Poverty Bay 7.5' quadrangle.

  9. Stochastic thermodynamics of quantum maps with and without equilibrium.

    Science.gov (United States)

    Barra, Felipe; Lledó, Cristóbal

    2017-11-01

    We study stochastic thermodynamics for a quantum system of interest whose dynamics is described by a completely positive trace-preserving (CPTP) map as a result of its interaction with a thermal bath. We define CPTP maps with equilibrium as CPTP maps with an invariant state such that the entropy production due to the action of the map on the invariant state vanishes. Thermal maps are a subgroup of CPTP maps with equilibrium. In general, for CPTP maps, the thermodynamic quantities, such as the entropy production or work performed on the system, depend on the combined state of the system plus its environment. We show that these quantities can be written in terms of system properties for maps with equilibrium. The relations that we obtain are valid for arbitrary coupling strengths between the system and the thermal bath. The fluctuations of thermodynamic quantities are considered in the framework of a two-point measurement scheme. We derive the entropy production fluctuation theorem for general maps and a fluctuation relation for the stochastic work on a system that starts in the Gibbs state. Some simplifications for the probability distributions in the case of maps with equilibrium are presented. We illustrate our results by considering spin 1/2 systems under thermal maps, nonthermal maps with equilibrium, maps with nonequilibrium steady states, and concatenations of them. Finally, and as an important application, we consider a particular limit in which the concatenation of maps generates a continuous time evolution in Lindblad form for the system of interest, and we show that the concept of maps with and without equilibrium translates into Lindblad equations with and without quantum detailed balance, respectively. The consequences for the thermodynamic quantities in this limit are discussed.

  10. Combining information from linkage and association mapping for next-generation sequencing longitudinal family data.

    Science.gov (United States)

    Balliu, Brunilda; Uh, Hae-Won; Tsonaka, Roula; Boehringer, Stefan; Helmer, Quinta; Houwing-Duistermaat, Jeanine J

    2014-01-01

    In this analysis, we investigate the contributions that linkage-based methods, such as identical-by-descent mapping, can make to association mapping to identify rare variants in next-generation sequencing data. First, we identify regions in which cases share more segments identical-by-descent around a putative causal variant than do controls. Second, we use a two-stage mixed-effect model approach to summarize the single-nucleotide polymorphism data within each region and include them as covariates in the model for the phenotype. We assess the impact of linkage disequilibrium in determining identical-by-descent states between individuals by using markers with and without linkage disequilibrium for the first part and the impact of imputation in testing for association by using imputed genome-wide association studies or raw sequence markers for the second part. We apply the method to next-generation sequencing longitudinal family data from Genetic Association Workshop 18 and identify a significant region at chromosome 3: 40249244-41025167 (p-value = 2.3 × 10(-3)).

  11. Mapping of medicine data with k-means and apriori combinations based on patient diagnosis

    Science.gov (United States)

    Dharshinni, N. P.; Mawengkang, H.; Nasution, M. K. M.

    2018-03-01

    Medicine is one of the items needed by sick society, the high influence of medicine on service and the economy in hospitals, requires mapping and planning the optimal need for medicines according to the conditions, because 50% -60% of hospital income is sourced from medicine sales. The purpose of this study was to find patterns of doctor’s prescription medicine association with sales data using an apriori algorithm based on data grouping using a k-means algorithm. The results of the experiments show that medicine prescription data with medicine sales have significant differences so that the data can not be used as materials for medicine planning, this is due to some indication of one of the unavailability of medicine caused by mapping inaccuracy so that the planning of medicine requirements is not optimal. The results of this analysis can be used as input materials in decision making, so the planning needs of medicines can be in accordance with the development of patient disease patterns.

  12. Measuring the Uncertainty of Probabilistic Maps Representing Human Motion for Indoor Navigation

    Directory of Open Access Journals (Sweden)

    Susanna Kaiser

    2016-01-01

    Full Text Available Indoor navigation and mapping have recently become an important field of interest for researchers because global navigation satellite systems (GNSS are very often unavailable inside buildings. FootSLAM, a SLAM (Simultaneous Localization and Mapping algorithm for pedestrians based on step measurements, addresses the indoor mapping and positioning problem and can provide accurate positioning in many structured indoor environments. In this paper, we investigate how to compare FootSLAM maps via two entropy metrics. Since collaborative FootSLAM requires the alignment and combination of several individual FootSLAM maps, we also investigate measures that help to align maps that partially overlap. We distinguish between the map entropy conditioned on the sequence of pedestrian’s poses, which is a measure of the uncertainty of the estimated map, and the entropy rate of the pedestrian’s steps conditioned on the history of poses and conditioned on the estimated map. Because FootSLAM maps are built on a hexagon grid, the entropy and relative entropy metrics are derived for the special case of hexagonal transition maps. The entropy gives us a new insight on the performance of FootSLAM’s map estimation process.

  13. Maps & minds : mapping through the ages

    Science.gov (United States)

    ,

    1984-01-01

    Throughout time, maps have expressed our understanding of our world. Human affairs have been influenced strongly by the quality of maps available to us at the major turning points in our history. "Maps & Minds" traces the ebb and flow of a few central ideas in the mainstream of mapping. Our expanding knowledge of our cosmic neighborhood stems largely from a small number of simple but grand ideas, vigorously pursued.

  14. Customized Body Mapping to Facilitate the Ergonomic Design of Sportswear.

    Science.gov (United States)

    Cao, Mingliang; Li, Yi; Guo, Yueping; Yao, Lei; Pan, Zhigeng

    2016-01-01

    A successful high-performance sportswear design that considers human factors should result in a significant increase in thermal comfort and reduce energy loss. The authors describe a body-mapping approach that facilitates the effective ergonomic design of sportswear. Their general framework can be customized based on the functional requirements of various sports and sportswear, the desired combination and selection of mapping areas for the human body, and customized quantitative data distribution of target physiological indicators.

  15. Combining forest inventory, satellite remote sensing, and geospatial data for mapping forest attributes of the conterminous United States

    Science.gov (United States)

    Mark Nelson; Greg Liknes; Charles H. Perry

    2009-01-01

    Analysis and display of forest composition, structure, and pattern provides information for a variety of assessments and management decision support. The objective of this study was to produce geospatial datasets and maps of conterminous United States forest land ownership, forest site productivity, timberland, and reserved forest land. Satellite image-based maps of...

  16. Contour Detection for UAV-Based Cadastral Mapping

    Directory of Open Access Journals (Sweden)

    Sophie Crommelinck

    2017-02-01

    Full Text Available Unmanned aerial vehicles (UAVs provide a flexible and low-cost solution for the acquisition of high-resolution data. The potential of high-resolution UAV imagery to create and update cadastral maps is being increasingly investigated. Existing procedures generally involve substantial fieldwork and many manual processes. Arguably, multiple parts of UAV-based cadastral mapping workflows could be automated. Specifically, as many cadastral boundaries coincide with visible boundaries, they could be extracted automatically using image analysis methods. This study investigates the transferability of gPb contour detection, a state-of-the-art computer vision method, to remotely sensed UAV images and UAV-based cadastral mapping. Results show that the approach is transferable to UAV data and automated cadastral mapping: object contours are comprehensively detected at completeness and correctness rates of up to 80%. The detection quality is optimal when the entire scene is covered with one orthoimage, due to the global optimization of gPb contour detection. However, a balance between high completeness and correctness is hard to achieve, so a combination with area-based segmentation and further object knowledge is proposed. The localization quality exhibits the usual dependency on ground resolution. The approach has the potential to accelerate the process of general boundary delineation during the creation and updating of cadastral maps.

  17. Simultaneous comparison and assessment of eight remotely sensed maps of Philippine forests

    Science.gov (United States)

    Estoque, Ronald C.; Pontius, Robert G.; Murayama, Yuji; Hou, Hao; Thapa, Rajesh B.; Lasco, Rodel D.; Villar, Merlito A.

    2018-05-01

    This article compares and assesses eight remotely sensed maps of Philippine forest cover in the year 2010. We examined eight Forest versus Non-Forest maps reclassified from eight land cover products: the Philippine Land Cover, the Climate Change Initiative (CCI) Land Cover, the Landsat Vegetation Continuous Fields (VCF), the MODIS VCF, the MODIS Land Cover Type product (MCD12Q1), the Global Tree Canopy Cover, the ALOS-PALSAR Forest/Non-Forest Map, and the GlobeLand30. The reference data consisted of 9852 randomly distributed sample points interpreted from Google Earth. We created methods to assess the maps and their combinations. Results show that the percentage of the Philippines covered by forest ranges among the maps from a low of 23% for the Philippine Land Cover to a high of 67% for GlobeLand30. Landsat VCF estimates 36% forest cover, which is closest to the 37% estimate based on the reference data. The eight maps plus the reference data agree unanimously on 30% of the sample points, of which 11% are attributable to forest and 19% to non-forest. The overall disagreement between the reference data and Philippine Land Cover is 21%, which is the least among the eight Forest versus Non-Forest maps. About half of the 9852 points have a nested structure such that the forest in a given dataset is a subset of the forest in the datasets that have more forest than the given dataset. The variation among the maps regarding forest quantity and allocation relates to the combined effects of the various definitions of forest and classification errors. Scientists and policy makers must consider these insights when producing future forest cover maps and when establishing benchmarks for forest cover monitoring.

  18. Inland excess water mapping using hyperspectral imagery

    Directory of Open Access Journals (Sweden)

    Csendes Bálint

    2016-01-01

    Full Text Available Hyperspectral imaging combined with the potentials of airborne scanning is a powerful tool to monitor environmental processes. The aim of this research was to use high resolution remotely sensed data to map the spatial extent of inland excess water patches in a Hungarian study area that is known for its oil and gas production facilities. Periodic floodings show high spatial and temporal variability, nevertheless, former studies have proven that the affected soil surfaces can be accurately identified. Besides separability measurements, we performed spectral angle classification, which gave a result of 85% overall accuracy and we also compared the generated land cover map with LIDAR elevation data.

  19. Differential maps, difference maps, interpolated maps, and long term prediction

    International Nuclear Information System (INIS)

    Talman, R.

    1988-06-01

    Mapping techniques may be thought to be attractive for the long term prediction of motion in accelerators, especially because a simple map can approximately represent an arbitrarily complicated lattice. The intention of this paper is to develop prejudices as to the validity of such methods by applying them to a simple, exactly solveable, example. It is shown that a numerical interpolation map, such as can be generated in the accelerator tracking program TEAPOT, predicts the evolution more accurately than an analytically derived differential map of the same order. Even so, in the presence of ''appreciable'' nonlinearity, it is shown to be impractical to achieve ''accurate'' prediction beyond some hundreds of cycles of oscillation. This suggests that the value of nonlinear maps is restricted to the parameterization of only the ''leading'' deviation from linearity. 41 refs., 6 figs

  20. Using Ripple Effect Mapping to Evaluate Program Impact: Choosing or Combining the Methods That Work Best for You

    Science.gov (United States)

    Emery, Mary; Higgins, Lorie; Chazdon, Scott; Hansen, Debra

    2015-01-01

    A mind mapping approach to evaluation called Ripple Effects Mapping (REM) has been developed and used by a number of Extension faculty across the country recently. This article describes three approaches to REM, as well as key differences and similarities. The authors, each from different land-grant institutions, believe REM is an effective way to…

  1. Communication: Quantitative multi-site frequency maps for amide I vibrational spectroscopy

    Energy Technology Data Exchange (ETDEWEB)

    Reppert, Mike [Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139 (United States); Department of Chemistry, University of Chicago, Chicago, Illinois 60637 (United States); Tokmakoff, Andrei, E-mail: tokmakoff@uchicago.edu [Department of Chemistry, University of Chicago, Chicago, Illinois 60637 (United States)

    2015-08-14

    An accurate method for predicting the amide I vibrational spectrum of a given protein structure has been sought for many years. Significant progress has been made recently by sampling structures from molecular dynamics simulations and mapping local electrostatic variables onto the frequencies of individual amide bonds. Agreement with experiment, however, has remained largely qualitative. Previously, we used dipeptide fragments and isotope-labeled constructs of the protein G mimic NuG2b as experimental standards for developing and testing amide I frequency maps. Here, we combine these datasets to test different frequency-map models and develop a novel method to produce an optimized four-site potential (4P) map based on the CHARMM27 force field. Together with a charge correction for glycine residues, the optimized map accurately describes both experimental datasets, with average frequency errors of 2–3 cm{sup −1}. This 4P map is shown to be convertible to a three-site field map which provides equivalent performance, highlighting the viability of both field- and potential-based maps for amide I spectral modeling. The use of multiple sampling points for local electrostatics is found to be essential for accurate map performance.

  2. Mineral mapping in the western Kunlun Mountains using Tiangong-1 hyperspectral imagery

    Science.gov (United States)

    Ge, W.; Cheng, Q.; Jing, L.; Chen, Y.; Guo, X.; Ding, H.; Liu, Q.

    2016-04-01

    The unmanned Chinese space module Tiangong-1 was launched in September 2011 with a hyperspectral sensor on board. The sensor combines high spatial and spectral resolution suitable for mineral mapping. In this study, Tiangong-1 hyperspectral data were employed for mineral mapping in the western Kunlun Mountains, an important metallogenic belt in China. A Spectral Hourglass Wizard method was applied to detect common minerals from the Tiangong- 1 shortwave infrared data with reference to a set of spectral libraries. Spectral information on minerals, such as zoisite, mica, quartz, sodalite, dolomite, and actinolite, was extracted from the data. The resulting mineral interpretation maps were highly correlated with the reference geological maps and information from ASTER satellite imagery, suggesting that the hyperspectral data are suitable for mineral mapping.

  3. Projection Mapping User Interface for Disabled People

    Directory of Open Access Journals (Sweden)

    Julius Gelšvartas

    2018-01-01

    Full Text Available Difficulty in communicating is one of the key challenges for people suffering from severe motor and speech disabilities. Often such person can communicate and interact with the environment only using assistive technologies. This paper presents a multifunctional user interface designed to improve communication efficiency and person independence. The main component of this interface is a projection mapping technique used to highlight objects in the environment. Projection mapping makes it possible to create a natural augmented reality information presentation method. The user interface combines a depth sensor and a projector to create camera-projector system. We provide a detailed description of camera-projector system calibration procedure. The described system performs tabletop object detection and automatic projection mapping. Multiple user input modalities have been integrated into the multifunctional user interface. Such system can be adapted to the needs of people with various disabilities.

  4. Preliminary genetic linkage map of the abalone Haliotis diversicolor Reeve

    Science.gov (United States)

    Shi, Yaohua; Guo, Ximing; Gu, Zhifeng; Wang, Aimin; Wang, Yan

    2010-05-01

    Haliotis diversicolor Reeve is one of the most important mollusks cultured in South China. Preliminary genetic linkage maps were constructed with amplified fragment length polymorphism (AFLP) markers. A total of 2 596 AFLP markers were obtained from 28 primer combinations in two parents and 78 offsprings. Among them, 412 markers (15.9%) were polymorphic and segregated in the mapping family. Chi-square tests showed that 151 (84.4%) markers segregated according to the expected 1:1 Mendelian ratio ( P<0.05) in the female parent, and 200 (85.8%) in the male parent. For the female map, 179 markers were used for linkage analysis and 90 markers were assigned to 17 linkage groups with an average interval length of 25.7 cm. For the male map, 233 markers were used and 94 were mapped into 18 linkage groups, with an average interval of 25.0 cm. The estimated genome length was 2 773.0 cm for the female and 2 817.1 cm for the male map. The observed length of the linkage map was 1 875.2 cm and 1 896.5 cm for the female and male maps, respectively. When doublets were considered, the map length increased to 2 152.8 cm for the female and 2 032.7 cm for the male map, corresponding to genome coverage of 77.6% and 72.2%, respectively.

  5. Pseudo natural colour aerial imagery for urban and suburban mapping

    DEFF Research Database (Denmark)

    Knudsen, Thomas

    2005-01-01

    Due to their near-infrared data channel, digital airborne four-channel imagers provide a potentially good discrimination between vegetation and human-made materials, which is very useful in automated mapping. Due to their red, green and blue data channels, they also provide natural colour images......, which are very useful in traditional (manual) mapping. In this paper, an algorithm is described which provides an approximation to the spectral capabilities of the four-channel imagers by using a colour-infrared aerial photo as input. The algorithm is tailored to urban/suburban surroundings, where...... the quality of the generated (pseudo) natural colour images are fully acceptable for manual mapping. This brings the combined availability of near-infrared and (pseudo) natural colours within reach for mapping projects based on traditional photogrammetry, which is valuable since traditional analytical cameras...

  6. Robot Mapping With Real-Time Incremental Localization Using Expectation Maximization

    National Research Council Canada - National Science Library

    Owens, Kevin L

    2005-01-01

    This research effort explores and develops a real-time sonar-based robot mapping and localization algorithm that provides pose correction within the context of a singe room, to be combined with pre...

  7. The Random-Map Technique: Enhancing Mind-Mapping with a Conceptual Combination Technique to Foster Creative Potential

    Science.gov (United States)

    Malycha, Charlotte P.; Maier, Günter W.

    2017-01-01

    Although creativity techniques are highly recommended in working environments, their effects have been scarcely investigated. Two cognitive processes are often considered to foster creative potential and are, therefore, taken as a basis for creativity techniques: knowledge activation and conceptual combination. In this study, both processes were…

  8. Comparing the performance of various digital soil mapping approaches to map physical soil properties

    Science.gov (United States)

    Laborczi, Annamária; Takács, Katalin; Pásztor, László

    2015-04-01

    digital soil mapping methods and sets of ancillary variables for producing the most accurate spatial prediction of texture classes in a given area of interest. Both legacy and recently collected data on PSD were used as reference information. The predictor variable data set consisted of digital elevation model and its derivatives, lithology, land use maps as well as various bands and indices of satellite images. Two conceptionally different approaches can be applied in the mapping process. Textural classification can be realized after particle size data were spatially extended by proper geostatistical method. Alternatively, the textural classification is carried out first, followed by the spatial extension through suitable data mining method. According to the first approach, maps of sand, silt and clay percentage have been computed through regression kriging (RK). Since the three maps are compositional (their sum must be 100%), we applied Additive Log-Ratio (alr) transformation, instead of kriging them independently. Finally, the texture class map has been compiled according to the USDA categories from the three maps. Different combinations of reference and training soil data and auxiliary covariables resulted several different maps. On the basis of the other way, the PSD were classified firstly into the USDA categories, then the texture class maps were compiled directly by data mining methods (classification trees and random forests). The various results were compared to each other as well as to the RK maps. The performance of the different methods and data sets has been examined by testing the accuracy of the geostatistically computed and the directly classified results to assess the most predictive and accurate method. Acknowledgement: Our work was supported by the Hungarian National Scientific Research Foundation (OTKA, Grant No. K105167).

  9. A New Perceptual Mapping Model Using Lifting Wavelet Transform

    Directory of Open Access Journals (Sweden)

    Taha TahaBasheer

    2017-01-01

    Full Text Available Perceptual mappingapproaches have been widely used in visual information processing in multimedia and internet of things (IOT applications. Accumulative Lifting Difference (ALD is proposed in this paper as texture mapping model based on low-complexity lifting wavelet transform, and combined with luminance masking for creating an efficient perceptual mapping model to estimate Just Noticeable Distortion (JND in digital images. In addition to low complexity operations, experiments results show that the proposed modelcan tolerate much more JND noise than models proposed before

  10. [The primary research and development of software oversampling mapping system for electrocardiogram].

    Science.gov (United States)

    Zhou, Yu; Ren, Jie

    2011-04-01

    We put forward a new concept of software oversampling mapping system for electrocardiogram (ECG) to assist the research of the ECG inverse problem to improve the generality of mapping system and the quality of mapping signals. We then developed a conceptual system based on the traditional ECG detecting circuit, Labview and DAQ card produced by National Instruments, and at the same time combined the newly-developed oversampling method into the system. The results indicated that the system could map ECG signals accurately and the quality of the signals was good. The improvement of hardware and enhancement of software made the system suitable for mapping in different situations. So the primary development of the software for oversampling mapping system was successful and further research and development can make the system a powerful tool for researching ECG inverse problem.

  11. Participatory Sensing Marine Debris: Current Trends and Future Opportunities

    Science.gov (United States)

    Jambeck, J.; Johnsen, K.

    2016-02-01

    The monitoring of litter and debris is challenging at the global scale because of spatial and temporal variability, disconnected local organizations and the use of paper and pen for documentation. The Marine Debris Tracker mobile app and citizen science program allows for the collection of global standardized data at a scale, speed and efficiency that was not previously possible. The app itself also serves as an outreach and education tool, creating an engaged participatory sensing instrument. This instrument is characterized by several aspects including range and frequency, accuracy and precision, accessibility, measurement dimensions, participant performance, and statistical analysis. Also, important to Marine Debris Tracker is open data and transparency. A web portal provides data that users have logged allowing immediate feedback to users and additional education opportunities. The engagement of users through a top tracker competition and social media keeps participants interested in the Marine Debris Tracker community. Over half a million items have been tracked globally, and maps provide both global and local distribution of data. The Marine Debris Tracker community and dataset continues to grow daily. We will present current usage and engagement, participatory sensing data distributions, choropleth maps of areas of active tracking, and discuss future technologies and platforms to expand data collection and conduct statistical analysis.

  12. Combining literature review, acoustic mapping and in situ observations: an overview of coralligenous assemblages in Liguria (NW Mediterranean Sea

    Directory of Open Access Journals (Sweden)

    Almudena Cánovas Molina

    2016-03-01

    Full Text Available A review and update of the existing knowledge on the coralligenous assemblages of Liguria (NW Italy was conducted as an essential step towards management measures for their conservation according to the EU Marine Strategy Framework Directive. By combining a literature review, acoustic mapping and in situ observations on a geographic information systems platform, we were able to assess the distribution and heterogeneity of coralligenous assemblages and the main pressures affecting them. The reliability of the literature was previously estimated using a dependability index. The coralligenous assemblages cover an area of 130.9 ha and range from 10 to 113 m depth. Twelve different biological facies (five of them not included in the EUNIS list were identified and four main geomorphotypes (plungingcliffs, paleocliffs, rockfalls and shoals were recognized. Incident light values influenced the distribution of four facies in Portofino promontory. Pressures were found on 33% of the coralligenous assemblages investigated, mainly due to fishing activities, mass mortality events, invasive species and occasional mucilaginous events. Our results showed a high spatial, geomorphological and biological heterogeneity of coralligenous assemblages in Liguria.

  13. PRECISE ORTHO IMAGERY AS THE SOURCE FOR AUTHORITATIVE AIRPORT MAPPING

    Directory of Open Access Journals (Sweden)

    H. Howard

    2016-06-01

    Full Text Available As the aviation industry moves from paper maps and charts to the digital cockpit and electronic flight bag, producers of these products need current and accurate data to ensure flight safety. FAA (Federal Aviation Administration and ICAO (International Civil Aviation Organization require certified suppliers to follow a defined protocol to produce authoritative map data for the aerodrome. Typical airport maps have been produced to meet 5 m accuracy requirements. The new digital aviation world is moving to 1 m accuracy maps to provide better situational awareness on the aerodrome. The commercial availability of 0.5 m satellite imagery combined with accurate ground control is enabling the production of avionics certified .85 m orthophotos of airports around the globe. CompassData maintains an archive of over 400+ airports as source data to support producers of 1 m certified Aerodrome Mapping Database (AMDB critical to flight safety and automated situational awareness. CompassData is a DO200A certified supplier of authoritative orthoimagery and attendees will learn how to utilize current airport imagery to build digital aviation mapping products.

  14. Precise Ortho Imagery as the Source for Authoritative Airport Mapping

    Science.gov (United States)

    Howard, H.; Hummel, P.

    2016-06-01

    As the aviation industry moves from paper maps and charts to the digital cockpit and electronic flight bag, producers of these products need current and accurate data to ensure flight safety. FAA (Federal Aviation Administration) and ICAO (International Civil Aviation Organization) require certified suppliers to follow a defined protocol to produce authoritative map data for the aerodrome. Typical airport maps have been produced to meet 5 m accuracy requirements. The new digital aviation world is moving to 1 m accuracy maps to provide better situational awareness on the aerodrome. The commercial availability of 0.5 m satellite imagery combined with accurate ground control is enabling the production of avionics certified .85 m orthophotos of airports around the globe. CompassData maintains an archive of over 400+ airports as source data to support producers of 1 m certified Aerodrome Mapping Database (AMDB) critical to flight safety and automated situational awareness. CompassData is a DO200A certified supplier of authoritative orthoimagery and attendees will learn how to utilize current airport imagery to build digital aviation mapping products.

  15. Stochastic perturbations in open chaotic systems: random versus noisy maps.

    Science.gov (United States)

    Bódai, Tamás; Altmann, Eduardo G; Endler, Antonio

    2013-04-01

    We investigate the effects of random perturbations on fully chaotic open systems. Perturbations can be applied to each trajectory independently (white noise) or simultaneously to all trajectories (random map). We compare these two scenarios by generalizing the theory of open chaotic systems and introducing a time-dependent conditionally-map-invariant measure. For the same perturbation strength we show that the escape rate of the random map is always larger than that of the noisy map. In random maps we show that the escape rate κ and dimensions D of the relevant fractal sets often depend nonmonotonically on the intensity of the random perturbation. We discuss the accuracy (bias) and precision (variance) of finite-size estimators of κ and D, and show that the improvement of the precision of the estimations with the number of trajectories N is extremely slow ([proportionality]1/lnN). We also argue that the finite-size D estimators are typically biased. General theoretical results are combined with analytical calculations and numerical simulations in area-preserving baker maps.

  16. Combining QTL mapping and transcriptome profiling of bulked RILs for identification of functional polymorphism for salt tolerance genes in rice (Oryza sativa L.).

    Science.gov (United States)

    Pandit, Awadhesh; Rai, Vandna; Bal, Subhashis; Sinha, Shikha; Kumar, Vinod; Chauhan, Mahesh; Gautam, Raj K; Singh, Rakesh; Sharma, Prakash C; Singh, Ashok K; Gaikwad, Kishor; Sharma, Tilak R; Mohapatra, Trilochan; Singh, Nagendra K

    2010-08-01

    Identification of genes for quantitative traits is difficult using any single approach due to complex inheritance of the traits and limited resolving power of the individual techniques. Here a combination of genetic mapping and bulked transcriptome profiling was used to narrow down the number of differentially expressed salt-responsive genes in rice in order to identify functional polymorphism of genes underlying the quantitative trait loci (QTL). A population of recombinant inbred lines (RILs) derived from cross between salt-tolerant variety CSR 27 and salt-sensitive variety MI 48 was used to map QTL for salt ion concentrations in different tissues and salt stress susceptibility index (SSI) for spikelet fertility, grain weight, and grain yield. Eight significant QTL intervals were mapped on chromosomes 1, 8, and 12 for the salt ion concentrations and a QTL controlling SSI for spikelet fertility was co-located in one of these intervals on chromosome 8. However, there were total 2,681 genes in these QTL intervals, making it difficult to pinpoint the genes responsible for the functional differences for the traits. Similarly, transcriptome profiling of the seedlings of tolerant and sensitive parents grown under control and salt-stress conditions showed 798 and 2,407 differentially expressed gene probes, respectively. By analyzing pools of RNA extracted from ten each of extremely tolerant and extremely sensitive RILs to normalize the background noise, the number of differentially expressed genes under salt stress was drastically reduced to 30 only. Two of these genes, an integral transmembrane protein DUF6 and a cation chloride cotransporter, were not only co-located in the QTL intervals but also showed the expected distortion of allele frequencies in the extreme tolerant and sensitive RILs, and therefore are suitable for future validation studies and development of functional markers for salt tolerance in rice to facilitate marker-assisted breeding.

  17. Mapping debris flow susceptibility using analytical network process ...

    Indian Academy of Sciences (India)

    Evangelin Ramani Sujatha

    2017-11-23

    Nov 23, 2017 ... methods known as the analytical network process (ANP) is used to map the ..... ciated in any prospective way, through feedbacks ..... slide susceptibility by means of multivariate statistical .... and bivariate statistics: A case study in southern Italy;. Nat. ... combination applied to Tevankarai Stream Watershed,.

  18. Spatial and Global Sensory Suppression Mapping Encompassing the Central 10° Field in Anisometropic Amblyopia.

    Science.gov (United States)

    Li, Jingjing; Li, Jinrong; Chen, Zidong; Liu, Jing; Yuan, Junpeng; Cai, Xiaoxiao; Deng, Daming; Yu, Minbin

    2017-01-01

    We investigate the efficacy of a novel dichoptic mapping paradigm in evaluating visual function of anisometropic amblyopes. Using standard clinical measures of visual function (visual acuity, stereo acuity, Bagolini lenses, and neutral density filters) and a novel quantitative mapping technique, 26 patients with anisometropic amblyopia (mean age = 19.15 ± 4.42 years) were assessed. Two additional psychophysical interocular suppression measurements were tested with dichoptic global motion coherence and binocular phase combination tasks. Luminance reduction was achieved by placing neutral density filters in front of the normal eye. Our study revealed that suppression changes across the central 10° visual field by mean luminance modulation in amblyopes as well as normal controls. Using simulation and an elimination of interocular suppression, we identified a novel method to effectively reflect the distribution of suppression in anisometropic amblyopia. Additionally, the new quantitative mapping technique was in good agreement with conventional clinical measures, such as interocular acuity difference (P suppression with dichoptic mapping paradigm and the results of the other two psychophysical methods (suppression mapping versus binocular phase combination, P suppression mapping versus global motion coherence, P = 0.005). The dichoptic suppression mapping technique is an effective method to represent impaired visual function in patients with anisometropic amblyopia. It offers a potential in "micro-"antisuppression mapping tests and therapies for amblyopia.

  19. A new mapping acquisition and processing system for simultaneous PIXE-RBS analysis with external beam

    International Nuclear Information System (INIS)

    Pichon, L.; Beck, L.; Walter, Ph.; Moignard, B.; Guillou, T.

    2010-01-01

    The combination of ion beam analysis techniques is particularly fruitful for the study of cultural heritage objects. For several years, the AGLAE facility of the Louvre laboratory has been implementing these techniques with an external beam. The recent set-up permits to carry out PIXE, PIGE and RBS simultaneously on the same analyzed spot with a particle beam of approximately 20 μm diameter. A new mapping system has been developed in order to provide elemental concentration maps from the PIXE and RBS spectra. This system combines the Genie2000 spectroscopy software with a homemade software that creates maps by handling acquisition with the object position. Each pixel of each PIXE and RBS maps contains the spectrum normalised by the dose. After analysing each pixel of the PIXE maps (low and high energy X-ray spectra) with the Gupixwin peak-fitting software, quantitative elemental concentrations are obtained for the major and trace elements. This paper presents the quantitative elemental maps extracted from the PIXE spectra and the development of RBS data processing for light element distribution and thin layer characterization. Examples on rock painting and lustrous ceramics will be presented.

  20. St. John Benthic Habitat Mapping - Moderate Depth Ground Validation Sites

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Benthic habitats of the moderate-depth marine environment in and around the Virgin Islands Coral Reef National Monument were mapped using a combination of...

  1. An integrated pan-tropical biomass map using multiple reference datasets

    OpenAIRE

    Avitabile, V.; Herold, M.; Heuvelink, G. B. M.; Lewis, S. L.; Phillips, O. L.; Asner, G. P.; Armston, J.; Ashton, P. S.; Banin, L.; Bayol, N.; Berry, N. J.; Boeckx, P.; de Jong, B. H. J.; DeVries, B.; Girardin, C. A. J.

    2016-01-01

    We combined two existing datasets of vegetation aboveground biomass (AGB) (Proceedings of the National Academy of Sciences of the United States of America, 108, 2011, 9899; Nature Climate Change, 2, 2012, 182) into a pan-tropical AGB map at 1-km resolution using an independent reference dataset of field observations and locally calibrated high-resolution biomass maps, harmonized and upscaled to 14 477 1-km AGB estimates. Our data fusion approach uses bias removal and weighted linear averaging...

  2. Clickstream data yields high-resolution maps of science

    Energy Technology Data Exchange (ETDEWEB)

    Bollen, Johan [Los Alamos National Laboratory; Van De Sompel, Herbert [Los Alamos National Laboratory; Hagberg, Aric [Los Alamos National Laboratory; Bettencourt, Luis [Los Alamos National Laboratory; Chute, Ryan [Los Alamos National Laboratory; Rodriguez, Marko A [Los Alamos National Laboratory; Balakireva, Lyudmila [Los Alamos National Laboratory

    2009-01-01

    Intricate maps of science have been created from citation data to visualize the structure of scientific activity. However, most scientific publications are now accessed online. Scholarly web portals record detailed log data at a scale that exceeds the number of all existing citations combined. Such log data is recorded immediately upon publication and keeps track of the sequences of user requests (clickstreams) that are issued by a variety of users across many different domains. Given these advantagees of log datasets over citation data, we investigate whether they can produce high-resolution, more current maps of science.

  3. Meso(topoclimatic maps and mapping

    Directory of Open Access Journals (Sweden)

    Ladislav Plánka

    2007-06-01

    Full Text Available The atmospheric characteristics can be studied from many points of view, most often we talk about time and spatial standpoint. Application of time standpoint leads either to different kinds of the synoptic and prognostic maps production, which presents actual state of atmosphere in short time section in the past or in the near future or to the climatic maps production which presents longterm weather regime. Spatial standpoint then differs map works according to natural phenomenon proportions, whereas the scale of their graphic presentation can be different. It depends on production purpose of each work.In the paper there are analysed methods of mapping and climatic maps production, which display longterm regime of chosen atmospheric features. These athmosphere features are formed in interaction with land surface and also have direct influence on people and their activities throughout the country. At the same time they’re influenced by anthropogenic intervention to the landscape.

  4. High-Resolution Reciprocal Space Mapping for Characterizing Deformation Structures

    DEFF Research Database (Denmark)

    Pantleon, Wolfgang; Wejdemann, Christian; Jakobsen, Bo

    2014-01-01

    With high-angular resolution three-dimensional X-ray diffraction (3DXRD), quantitative information is gained about dislocation structures in individual grains in the bulk of a macroscopic specimen by acquiring reciprocal space maps. In high-resolution 3D reciprocal space maps of tensile......-deformed copper, individual, almost dislocation-free subgrains are identified from high-intensity peaks and distinguished by their unique combination of orientation and elastic strain; dislocation walls manifest themselves as a smooth cloud of lower intensity. The elastic strain shows only minor variations within...... dynamics is followed in situ during varying loading conditions by reciprocal space mapping: during uninterrupted tensile deformation, formation of subgrains is observed concurrently with broadening of Bragg reflections shortly after the onset of plastic deformation. When the traction is terminated, stress...

  5. First Results of a Tandem Terrestrial-Unmanned Aerial mapKITE System with Kinematic Ground Control Points for Corridor Mapping

    Directory of Open Access Journals (Sweden)

    Pere Molina

    2017-01-01

    Full Text Available In this article, we report about the first results of the mapKITE system, a tandem terrestrial-aerial concept for geodata acquisition and processing, obtained in corridor mapping missions. The system combines an Unmanned Aerial System (UAS and a Terrestrial Mobile Mapping System (TMMS operated in a singular way: real-time waypoints are computed from the TMMS platform and sent to the UAS in a follow-me scheme. This approach leads to a simultaneous acquisition of aerial-plus-ground geodata and, moreover, opens the door to an advanced post-processing approach for sensor orientation. The current contribution focuses on analysing the impact of the new, dynamic Kinematic Ground Control Points (KGCPs, which arise inherently from the mapKITE paradigm, as an alternative to conventional, costly Ground Control Points (GCPs. In the frame of a mapKITE campaign carried out in June 2016, we present results entailing sensor orientation and calibration accuracy assessment through ground check points, and precision and correlation analysis of self-calibration parameters’ estimation. Conclusions indicate that the mapKITE concept eliminates the need for GCPs when using only KGCPs plus a couple of GCPs at each corridor end, achieving check point horizontal accuracy of μ E , N ≈ 1.7 px (3.4 cm and μ h ≈ 4.3 px (8.6 cm. Since obtained from a simplified version of the system, these preliminary results are encouraging from a future perspective.

  6. Risk predicting of macropore flow using pedotransfer functions, textural maps and modeling

    DEFF Research Database (Denmark)

    Iversen, Bo Vangsø; Børgesen, Christen Duus; Lægdsmand, Mette

    2011-01-01

    of this study were first to develop pedotransfer functions (PTFs) predicting near-saturated [k(−1)] and saturated (Ks) hydraulic conductivity using simple soil parameters as predictors and second to use this information and a newly developed rasterbased soil property map of Denmark to identify risk areas...... modeling were used to construct a new map dividing Denmark into risk categories for macropore flow. This map can be combined with other tools to identify areas where there is a high risk of contaminants leaching out of the root zone....

  7. Environmental external gamma radiation isodose map of Kinta and Batang Padang Districts, Perak

    International Nuclear Information System (INIS)

    Ismail, B.; Monawarah, N.M.Y.; Hng, P.W.; Sharifah Mastura, S.A

    2005-01-01

    The background radiation levels of any area, including those related to having deposit of NORM is important to be mapped out before being developed in order to assess their for potential radiological risk. A study was carried out map the environmental external gammas radiation dose rates in Kinta and Batang Padang Districts, Perak. The interpolation method in GIS was used to produce an isodose map based on prediction made from 13 different geological structure soil type combinations. Actual field measurements were carried using Sodium Iodine detectors. A predicted isodose map was plotted based on 5 dose rate classes, ranging from 0.16-0.57 Sv hr -1 . The area dose rates was increased to 5.00 Sv hr -1 once the dose rates contributed artificially by among plants to the study area was considered. Results also showed that the geosoil combination of steep land and acid intrusive rock areas radiates the highest dose rate levels (90.31 %) and most of these areas are in areas covered by hilly mountain. (Author)

  8. PepMapper: a collaborative web tool for mapping epitopes from affinity-selected peptides.

    Directory of Open Access Journals (Sweden)

    Wenhan Chen

    Full Text Available Epitope mapping from affinity-selected peptides has become popular in epitope prediction, and correspondingly many Web-based tools have been developed in recent years. However, the performance of these tools varies in different circumstances. To address this problem, we employed an ensemble approach to incorporate two popular Web tools, MimoPro and Pep-3D-Search, together for taking advantages offered by both methods so as to give users more options for their specific purposes of epitope-peptide mapping. The combined operation of Union finds as many associated peptides as possible from both methods, which increases sensitivity in finding potential epitopic regions on a given antigen surface. The combined operation of Intersection achieves to some extent the mutual verification by the two methods and hence increases the likelihood of locating the genuine epitopic region on a given antigen in relation to the interacting peptides. The Consistency between Intersection and Union is an indirect sufficient condition to assess the likelihood of successful peptide-epitope mapping. On average from 27 tests, the combined operations of PepMapper outperformed either MimoPro or Pep-3D-Search alone. Therefore, PepMapper is another multipurpose mapping tool for epitope prediction from affinity-selected peptides. The Web server can be freely accessed at: http://informatics.nenu.edu.cn/PepMapper/

  9. Geodesy- and geology-based slip-rate models for the Western United States (excluding California) national seismic hazard maps

    Science.gov (United States)

    Petersen, Mark D.; Zeng, Yuehua; Haller, Kathleen M.; McCaffrey, Robert; Hammond, William C.; Bird, Peter; Moschetti, Morgan; Shen, Zhengkang; Bormann, Jayne; Thatcher, Wayne

    2014-01-01

    The 2014 National Seismic Hazard Maps for the conterminous United States incorporate additional uncertainty in fault slip-rate parameter that controls the earthquake-activity rates than was applied in previous versions of the hazard maps. This additional uncertainty is accounted for by new geodesy- and geology-based slip-rate models for the Western United States. Models that were considered include an updated geologic model based on expert opinion and four combined inversion models informed by both geologic and geodetic input. The two block models considered indicate significantly higher slip rates than the expert opinion and the two fault-based combined inversion models. For the hazard maps, we apply 20 percent weight with equal weighting for the two fault-based models. Off-fault geodetic-based models were not considered in this version of the maps. Resulting changes to the hazard maps are generally less than 0.05 g (acceleration of gravity). Future research will improve the maps and interpret differences between the new models.

  10. Probabilistic Flood Mapping using Volunteered Geographical Information

    Science.gov (United States)

    Rivera, S. J.; Girons Lopez, M.; Seibert, J.; Minsker, B. S.

    2016-12-01

    Flood extent maps are widely used by decision makers and first responders to provide critical information that prevents economic impacts and the loss of human lives. These maps are usually obtained from sensory data and/or hydrologic models, which often have limited coverage in space and time. Recent developments in social media and communication technology have created a wealth of near-real-time, user-generated content during flood events in many urban areas, such as flooded locations, pictures of flooding extent and height, etc. These data could improve decision-making and response operations as events unfold. However, the integration of these data sources has been limited due to the need for methods that can extract and translate the data into useful information for decision-making. This study presents an approach that uses volunteer geographic information (VGI) and non-traditional data sources (i.e., Twitter, Flicker, YouTube, and 911 and 311 calls) to generate/update the flood extent maps in areas where no models and/or gauge data are operational. The approach combines Web-crawling and computer vision techniques to gather information about the location, extent, and water height of the flood from unstructured textual data, images, and videos. These estimates are then used to provide an updated flood extent map for areas surrounding the geo-coordinate of the VGI through the application of a Hydro Growing Region Algorithm (HGRA). HGRA combines hydrologic and image segmentation concepts to estimate a probabilistic flooding extent along the corresponding creeks. Results obtained for a case study in Austin, TX (i.e., 2015 Memorial Day flood) were comparable to those obtained by a calibrated hydrologic model and had good spatial correlation with flooding extents estimated by the Federal Emergency Management Agency (FEMA).

  11. Late emergence of the vibrissa direction selectivity map in the rat barrel cortex.

    Science.gov (United States)

    Kremer, Yves; Léger, Jean-François; Goodman, Dan; Brette, Romain; Bourdieu, Laurent

    2011-07-20

    In the neocortex, neuronal selectivities for multiple sensorimotor modalities are often distributed in topographical maps thought to emerge during a restricted period in early postnatal development. Rodent barrel cortex contains a somatotopic map for vibrissa identity, but the existence of maps representing other tactile features has not been clearly demonstrated. We addressed the issue of the existence in the rat cortex of an intrabarrel map for vibrissa movement direction using in vivo two-photon imaging. We discovered that the emergence of a direction map in rat barrel cortex occurs long after all known critical periods in the somatosensory system. This map is remarkably specific, taking a pinwheel-like form centered near the barrel center and aligned to the barrel cortex somatotopy. We suggest that this map may arise from intracortical mechanisms and demonstrate by simulation that the combination of spike-timing-dependent plasticity at synapses between layer 4 and layer 2/3 and realistic pad stimulation is sufficient to produce such a map. Its late emergence long after other classical maps suggests that experience-dependent map formation and refinement continue throughout adult life.

  12. Environmental sensibility maps of pipelines rows; Mapas de sensibilidade ambiental para faixas de dutos terrestres

    Energy Technology Data Exchange (ETDEWEB)

    Oliveira, Wilson J. de [PETROBRAS Engenharia, Rio de Janeiro, RJ (Brazil). Engenharia de Avaliacao Ambiental IEGEN/EGE/EAMB; Ferreira Filho, Aluisio Teles; Ferreira, Vanderlei Cardoso [TRANSPETRO - PETROBRAS Transporte S.A., Rio de Janeiro, RJ (Brazil). SMS - Seguranca, Meio Ambiente e Saude; Braun, Oscar P.G.; Pereira, Junior, Edson Rodrigues [Geodatum, Rio de Janeiro, RJ (Brazil)

    2003-07-01

    To subsidize its contingency plans for oil leaks, TRANSPETRO, subsidiary of PETROBRAS, set up an internal program with a big extension to obtain Environmental Sensibility Maps over a strip of twenty kilometers of width along more than five thousand kilometers of pipelines. Due to the pioneer characteristic of these natural survey (thematic cartography) it was opted a first approach for integration of this information in 1:50.000 scale. Based on a Geographical Information System (GIS), it was opted the supervised geo processing resources, compiling, firstly, the elevation, soil and geological maps for generation of the physical environment vulnerability units. Using a combination by weight average, ten vulnerability units were generated and were improved through aggregation in five units to decrease the complexity of the representation in map. These classes represent the combinations of variables of the physical environment that can be recognized by theirs corresponding landscapes. Based on interpretation of orbital LANDSAT TM images, aided by verifications in aerial photograph and a systematic survey of notable points of environmental observation (PVAs) along the pipelines, it was elaborated a general map of soil use and vegetable coverage. The classes of this theme were combined with the classes of physical vulnerability environment to generate five classes of Environmental Sensibility (Environmental Sensibility Maps). Over this theme, were attributed the representations of the main types of vegetable coverage and occupation of the soil, as well as the fauna and the other social-economics aspects, obtaining therefore a map with all the essential controller information of the environmental protection measures. (author)

  13. NaviCell: a web-based environment for navigation, curation and maintenance of large molecular interaction maps.

    Science.gov (United States)

    Kuperstein, Inna; Cohen, David P A; Pook, Stuart; Viara, Eric; Calzone, Laurence; Barillot, Emmanuel; Zinovyev, Andrei

    2013-10-07

    Molecular biology knowledge can be formalized and systematically represented in a computer-readable form as a comprehensive map of molecular interactions. There exist an increasing number of maps of molecular interactions containing detailed and step-wise description of various cell mechanisms. It is difficult to explore these large maps, to organize discussion of their content and to maintain them. Several efforts were recently made to combine these capabilities together in one environment, and NaviCell is one of them. NaviCell is a web-based environment for exploiting large maps of molecular interactions, created in CellDesigner, allowing their easy exploration, curation and maintenance. It is characterized by a combination of three essential features: (1) efficient map browsing based on Google Maps; (2) semantic zooming for viewing different levels of details or of abstraction of the map and (3) integrated web-based blog for collecting community feedback. NaviCell can be easily used by experts in the field of molecular biology for studying molecular entities of interest in the context of signaling pathways and crosstalk between pathways within a global signaling network. NaviCell allows both exploration of detailed molecular mechanisms represented on the map and a more abstract view of the map up to a top-level modular representation. NaviCell greatly facilitates curation, maintenance and updating the comprehensive maps of molecular interactions in an interactive and user-friendly fashion due to an imbedded blogging system. NaviCell provides user-friendly exploration of large-scale maps of molecular interactions, thanks to Google Maps and WordPress interfaces, with which many users are already familiar. Semantic zooming which is used for navigating geographical maps is adopted for molecular maps in NaviCell, making any level of visualization readable. In addition, NaviCell provides a framework for community-based curation of maps.

  14. Rational mapping (RAM) of in-core data

    International Nuclear Information System (INIS)

    Bonalumi, R.A.; Kherani, N.P.

    1985-01-01

    A unique processing of in-core flux detector data is described and demonstrated, such that the detailed in-core power distribution can be derived with great accuracy by combining a speciall ''smoothed-out'' set of in-core data with neutron diffusion theory. Rational Mapping (RAM) is designed in such a way that erratic detector signals are recognized very efficiently and can be eliminated from the experimental data set: This is achieved by modal expansion of the difference between theoretical fluxes and experimental fluxes at the detector sites. Sensitivity studies have shown that RAM is quite stable, does not absorb the ''wild'' detector error in the mapping procedure, and results in mapped fluxes with errors about three times smaller than would be obtained by direct interpolation of detector readings. A new method is described to infer corrections to theoretical core parameters based on the difference between the RAM fluxes and the theoretical fluxes

  15. Mapping the gendered city

    DEFF Research Database (Denmark)

    Almahmood, Mohammed Abdulrahman M; Scharnhorst, Eric; Carstensen, Trine Agervig

    2017-01-01

    opportunities for gender interaction. However, streets are socially conceived as men’s walkscapes, which limits women’s presence, especially at certain times of the day. This paper reveals how walking experience, tempo-rhythm, sense of place and range of walkscapes are not only determined by ‘universal’ spatial...... Peninsula, where socio-cultural values and restrictions regulate men and women’s use and access to public spaces. The methodology used is a combination of movement tracking data using GPS technology and map-based workshops where participants can reflect on their walking behaviour and spatial preferences...

  16. Analysis of multiplex gene expression maps obtained by voxelation

    Directory of Open Access Journals (Sweden)

    Smith Desmond J

    2009-04-01

    Full Text Available Abstract Background Gene expression signatures in the mammalian brain hold the key to understanding neural development and neurological disease. Researchers have previously used voxelation in combination with microarrays for acquisition of genome-wide atlases of expression patterns in the mouse brain. On the other hand, some work has been performed on studying gene functions, without taking into account the location information of a gene's expression in a mouse brain. In this paper, we present an approach for identifying the relation between gene expression maps obtained by voxelation and gene functions. Results To analyze the dataset, we chose typical genes as queries and aimed at discovering similar gene groups. Gene similarity was determined by using the wavelet features extracted from the left and right hemispheres averaged gene expression maps, and by the Euclidean distance between each pair of feature vectors. We also performed a multiple clustering approach on the gene expression maps, combined with hierarchical clustering. Among each group of similar genes and clusters, the gene function similarity was measured by calculating the average gene function distances in the gene ontology structure. By applying our methodology to find similar genes to certain target genes we were able to improve our understanding of gene expression patterns and gene functions. By applying the clustering analysis method, we obtained significant clusters, which have both very similar gene expression maps and very similar gene functions respectively to their corresponding gene ontologies. The cellular component ontology resulted in prominent clusters expressed in cortex and corpus callosum. The molecular function ontology gave prominent clusters in cortex, corpus callosum and hypothalamus. The biological process ontology resulted in clusters in cortex, hypothalamus and choroid plexus. Clusters from all three ontologies combined were most prominently expressed in

  17. Analysis of multiplex gene expression maps obtained by voxelation.

    Science.gov (United States)

    An, Li; Xie, Hongbo; Chin, Mark H; Obradovic, Zoran; Smith, Desmond J; Megalooikonomou, Vasileios

    2009-04-29

    Gene expression signatures in the mammalian brain hold the key to understanding neural development and neurological disease. Researchers have previously used voxelation in combination with microarrays for acquisition of genome-wide atlases of expression patterns in the mouse brain. On the other hand, some work has been performed on studying gene functions, without taking into account the location information of a gene's expression in a mouse brain. In this paper, we present an approach for identifying the relation between gene expression maps obtained by voxelation and gene functions. To analyze the dataset, we chose typical genes as queries and aimed at discovering similar gene groups. Gene similarity was determined by using the wavelet features extracted from the left and right hemispheres averaged gene expression maps, and by the Euclidean distance between each pair of feature vectors. We also performed a multiple clustering approach on the gene expression maps, combined with hierarchical clustering. Among each group of similar genes and clusters, the gene function similarity was measured by calculating the average gene function distances in the gene ontology structure. By applying our methodology to find similar genes to certain target genes we were able to improve our understanding of gene expression patterns and gene functions. By applying the clustering analysis method, we obtained significant clusters, which have both very similar gene expression maps and very similar gene functions respectively to their corresponding gene ontologies. The cellular component ontology resulted in prominent clusters expressed in cortex and corpus callosum. The molecular function ontology gave prominent clusters in cortex, corpus callosum and hypothalamus. The biological process ontology resulted in clusters in cortex, hypothalamus and choroid plexus. Clusters from all three ontologies combined were most prominently expressed in cortex and corpus callosum. The experimental

  18. A Comparison of Spectral Angle Mapper and Artificial Neural Network Classifiers Combined with Landsat TM Imagery Analysis for Obtaining Burnt Area Mapping

    Directory of Open Access Journals (Sweden)

    Marko Scholze

    2010-03-01

    Full Text Available Satellite remote sensing, with its unique synoptic coverage capabilities, can provide accurate and immediately valuable information on fire analysis and post-fire assessment, including estimation of burnt areas. In this study the potential for burnt area mapping of the combined use of Artificial Neural Network (ANN and Spectral Angle Mapper (SAM classifiers with Landsat TM satellite imagery was evaluated in a Mediterranean setting. As a case study one of the most catastrophic forest fires, which occurred near the capital of Greece during the summer of 2007, was used. The accuracy of the two algorithms in delineating the burnt area from the Landsat TM imagery, acquired shortly after the fire suppression, was determined by the classification accuracy results of the produced thematic maps. In addition, the derived burnt area estimates from the two classifiers were compared with independent estimates available for the study region, obtained from the analysis of higher spatial resolution satellite data. In terms of the overall classification accuracy, ANN outperformed (overall accuracy 90.29%, Kappa coefficient 0.878 the SAM classifier (overall accuracy 83.82%, Kappa coefficient 0.795. Total burnt area estimates from the two classifiers were found also to be in close agreement with the other available estimates for the study region, with a mean absolute percentage difference of ~1% for ANN and ~6.5% for SAM. The study demonstrates the potential of the examined here algorithms in detecting burnt areas in a typical Mediterranean setting.

  19. YouGenMap: a web platform for dynamic multi-comparative mapping and visualization of genetic maps

    Science.gov (United States)

    Keith Batesole; Kokulapalan Wimalanathan; Lin Liu; Fan Zhang; Craig S. Echt; Chun Liang

    2014-01-01

    Comparative genetic maps are used in examination of genome organization, detection of conserved gene order, and exploration of marker order variations. YouGenMap is an open-source web tool that offers dynamic comparative mapping capability of users' own genetic mapping between 2 or more map sets. Users' genetic map data and optional gene annotations are...

  20. Topological schemas of cognitive maps and spatial learning

    Directory of Open Access Journals (Sweden)

    Andrey eBabichev

    2016-03-01

    Full Text Available Spatial navigation in mammals is based on building a mental representation of their environment---a cognitive map. However, both the nature of this cognitive map and its underpinning in neural structures and activity remains vague. A key difficulty is that these maps are collective, emergent phenomena that cannot be reduced to a simple combination of inputs provided by individual neurons. In this paper we suggest computational frameworks for integrating the spiking signals of individual cells into a spatial map, which we call schemas. We provide examples of four schemas defined by different types of topological relations that may be neurophysiologically encoded in the brain and demonstrate that each schema provides its own large-scale characteristics of the environment---the schema integrals. Moreover, we find that, in all cases, these integrals are learned at a rate which is faster than the rate of complete training of neural networks. Thus, the proposed schema framework differentiates between the cognitive aspect of spatial learning and the physiological aspect at the neural network level.

  1. Topological Schemas of Cognitive Maps and Spatial Learning.

    Science.gov (United States)

    Babichev, Andrey; Cheng, Sen; Dabaghian, Yuri A

    2016-01-01

    Spatial navigation in mammals is based on building a mental representation of their environment-a cognitive map. However, both the nature of this cognitive map and its underpinning in neural structures and activity remains vague. A key difficulty is that these maps are collective, emergent phenomena that cannot be reduced to a simple combination of inputs provided by individual neurons. In this paper we suggest computational frameworks for integrating the spiking signals of individual cells into a spatial map, which we call schemas. We provide examples of four schemas defined by different types of topological relations that may be neurophysiologically encoded in the brain and demonstrate that each schema provides its own large-scale characteristics of the environment-the schema integrals. Moreover, we find that, in all cases, these integrals are learned at a rate which is faster than the rate of complete training of neural networks. Thus, the proposed schema framework differentiates between the cognitive aspect of spatial learning and the physiological aspect at the neural network level.

  2. Entropic Phase Maps in Discrete Quantum Gravity

    Directory of Open Access Journals (Sweden)

    Benjamin F. Dribus

    2017-06-01

    Full Text Available Path summation offers a flexible general approach to quantum theory, including quantum gravity. In the latter setting, summation is performed over a space of evolutionary pathways in a history configuration space. Discrete causal histories called acyclic directed sets offer certain advantages over similar models appearing in the literature, such as causal sets. Path summation defined in terms of these histories enables derivation of discrete Schrödinger-type equations describing quantum spacetime dynamics for any suitable choice of algebraic quantities associated with each evolutionary pathway. These quantities, called phases, collectively define a phase map from the space of evolutionary pathways to a target object, such as the unit circle S 1 ⊂ C , or an analogue such as S 3 or S 7 . This paper explores the problem of identifying suitable phase maps for discrete quantum gravity, focusing on a class of S 1 -valued maps defined in terms of “structural increments” of histories, called terminal states. Invariants such as state automorphism groups determine multiplicities of states, and induce families of natural entropy functions. A phase map defined in terms of such a function is called an entropic phase map. The associated dynamical law may be viewed as an abstract combination of Schrödinger’s equation and the second law of thermodynamics.

  3. Automated Plantation Mapping in Indonesia Using Remote Sensing Data

    Science.gov (United States)

    Karpatne, A.; Jia, X.; Khandelwal, A.; Kumar, V.

    2017-12-01

    Plantation mapping is critical for understanding and addressing deforestation, a key driver of climate change and ecosystem degradation. Unfortunately, most plantation maps are limited to small areas for specific years because they rely on visual inspection of imagery. In this work, we propose a data-driven approach which automatically generates yearly plantation maps for large regions using MODIS multi-spectral data. While traditional machine learning algorithms face manifold challenges in this task, e.g. imperfect training labels, spatio-temporal data heterogeneity, noisy and high-dimensional data, lack of evaluation data, etc., we introduce a novel deep learning-based framework that combines existing imperfect plantation products as training labels and models the spatio-temporal relationships of land covers. We also explores the post-processing steps based on Hidden Markov Model that further improve the detection accuracy. Then we conduct extensive evaluation of the generated plantation maps. Specifically, by randomly sampling and comparing with high-resolution Digital Globe imagery, we demonstrate that the generated plantation maps achieve both high precision and high recall. When compared with existing plantation mapping products, our detection can avoid both false positives and false negatives. Finally, we utilize the generated plantation maps in analyzing the relationship between forest fires and growth of plantations, which assists in better understanding the cause of deforestation in Indonesia.

  4. Interactive Mapping on Virtual Terrain Models Using RIMS (Real-time, Interactive Mapping System)

    Science.gov (United States)

    Bernardin, T.; Cowgill, E.; Gold, R. D.; Hamann, B.; Kreylos, O.; Schmitt, A.

    2006-12-01

    geophysicists, and planetary scientists. The strength of our system is that it combines interactive rendering with interactive mapping and measurement of features observed in topographic and texture data. Comparison with commercially available software indicates that our system improves mapping accuracy and efficiency. More importantly, it enables Earth scientists to rapidly achieve a deeper level of understanding of remotely sensed data, as observations can be made that are not possible with existing systems.

  5. Cross-terminology mapping challenges: A demonstration using medication terminological systems

    Science.gov (United States)

    Saitwal, Himali; Qing, David; Jones, Stephen; Bernstam, Elmer; Chute, Christopher G.; Johnson, Todd R.

    2015-01-01

    Standardized terminological systems for biomedical information have provided considerable benefits to biomedical applications and research. However, practical use of this information often requires mapping across terminological systems—a complex and time-consuming process. This paper demonstrates the complexity and challenges of mapping across terminological systems in the context of medication information. It provides a review of medication terminological systems and their linkages, then describes a case study in which we mapped proprietary medication codes from an electronic health record to SNOMED-CT and the UMLS Metathesaurus. The goal was to create a polyhierarchical classification system for querying an i2b2 clinical data warehouse. We found that three methods were required to accurately map the majority of actively prescribed medications. Only 62.5% of source medication codes could be mapped automatically. The remaining codes were mapped using a combination of semi-automated string comparison with expert selection, and a completely manual approach. Compound drugs were especially difficult to map: only 7.5% could be mapped using the automatic method. General challenges to mapping across terminological systems include (1) the availability of up-to-date information to assess the suitability of a given terminological system for a particular use case, and to assess the quality and completeness of cross-terminology links; (2) the difficulty of correctly using complex, rapidly evolving, modern terminologies; (3) the time and effort required to complete and evaluate the mapping; (4) the need to address differences in granularity between the source and target terminologies; and (5) the need to continuously update the mapping as terminological systems evolve. PMID:22750536

  6. Combining Google Earth and GIS mapping technologies in a dengue surveillance system for developing countries

    Directory of Open Access Journals (Sweden)

    Sobieszczyk Magdalena E

    2009-07-01

    Full Text Available Abstract Background Dengue fever is a mosquito-borne illness that places significant burden on tropical developing countries with unplanned urbanization. A surveillance system using Google Earth and GIS mapping technologies was developed in Nicaragua as a management tool. Methods and Results Satellite imagery of the town of Bluefields, Nicaragua captured from Google Earth was used to create a base-map in ArcGIS 9. Indices of larval infestation, locations of tire dumps, cemeteries, large areas of standing water, etc. that may act as larval development sites, and locations of the homes of dengue cases collected during routine epidemiologic surveying were overlaid onto this map. Visual imagery of the location of dengue cases, larval infestation, and locations of potential larval development sites were used by dengue control specialists to prioritize specific neighborhoods for targeted control interventions. Conclusion This dengue surveillance program allows public health workers in resource-limited settings to accurately identify areas with high indices of mosquito infestation and interpret the spatial relationship of these areas with potential larval development sites such as garbage piles and large pools of standing water. As a result, it is possible to prioritize control strategies and to target interventions to highest risk areas in order to eliminate the likely origin of the mosquito vector. This program is well-suited for resource-limited settings since it utilizes readily available technologies that do not rely on Internet access for daily use and can easily be implemented in many developing countries for very little cost.

  7. On Coding Non-Contiguous Letter Combinations

    Directory of Open Access Journals (Sweden)

    Frédéric eDandurand

    2011-06-01

    Full Text Available Starting from the hypothesis that printed word identification initially involves the parallel mapping of visual features onto location-specific letter identities, we analyze the type of information that would be involved in optimally mapping this location-specific orthographic code onto a location-invariant lexical code. We assume that some intermediate level of coding exists between individual letters and whole words, and that this involves the representation of letter combinations. We then investigate the nature of this intermediate level of coding given the constraints of optimality. This intermediate level of coding is expected to compress data while retaining as much information as possible about word identity. Information conveyed by letters is a function of how much they constrain word identity and how visible they are. Optimization of this coding is a combination of minimizing resources (using the most compact representations and maximizing information. We show that in a large proportion of cases, non-contiguous letter sequences contain more information than contiguous sequences, while at the same time requiring less precise coding. Moreover, we found that the best predictor of human performance in orthographic priming experiments was within-word ranking of conditional probabilities, rather than average conditional probabilities. We conclude that from an optimality perspective, readers learn to select certain contiguous and non-contiguous letter combinations as information that provides the best cue to word identity.

  8. Mapping visual cortex in monkeys and humans using surface-based atlases

    Science.gov (United States)

    Van Essen, D. C.; Lewis, J. W.; Drury, H. A.; Hadjikhani, N.; Tootell, R. B.; Bakircioglu, M.; Miller, M. I.

    2001-01-01

    We have used surface-based atlases of the cerebral cortex to analyze the functional organization of visual cortex in humans and macaque monkeys. The macaque atlas contains multiple partitioning schemes for visual cortex, including a probabilistic atlas of visual areas derived from a recent architectonic study, plus summary schemes that reflect a combination of physiological and anatomical evidence. The human atlas includes a probabilistic map of eight topographically organized visual areas recently mapped using functional MRI. To facilitate comparisons between species, we used surface-based warping to bring functional and geographic landmarks on the macaque map into register with corresponding landmarks on the human map. The results suggest that extrastriate visual cortex outside the known topographically organized areas is dramatically expanded in human compared to macaque cortex, particularly in the parietal lobe.

  9. Facilitating participation in formative evaluation supported by effect map

    DEFF Research Database (Denmark)

    Granlien, Maren Sander

    2009-01-01

    It has been suggested that formative evaluation should be an integrated part of system implementation in order to improve the outcome of system use. In a design project an approach combining participatory design (PD) and formative evaluation has shown a great potential for improving the design of...... map is applied in an action research study in the Danish health care sector aiming at improving the medication process and the use of the electronic medication record supporting the medication process. ...... designed effect map. The purpose of the effect map is twofold: a) To encourage user participation in the early activities of formative evaluation b) The effects specified can be used as formative evaluation measures and guidance in the process of improving the system. The evaluation approach and the effect...

  10. Direct and accelerated parameter mapping using the unscented Kalman filter.

    Science.gov (United States)

    Zhao, Li; Feng, Xue; Meyer, Craig H

    2016-05-01

    To accelerate parameter mapping using a new paradigm that combines image reconstruction and model regression as a parameter state-tracking problem. In T2 mapping, the T2 map is first encoded in parameter space by multi-TE measurements and then encoded by Fourier transformation with readout/phase encoding gradients. Using a state transition function and a measurement function, the unscented Kalman filter can describe T2 mapping as a dynamic system and directly estimate the T2 map from the k-space data. The proposed method was validated with a numerical brain phantom and volunteer experiments with a multiple-contrast spin echo sequence. Its performance was compared with a conjugate-gradient nonlinear inversion method at undersampling factors of 2 to 8. An accelerated pulse sequence was developed based on this method to achieve prospective undersampling. Compared with the nonlinear inversion reconstruction, the proposed method had higher precision, improved structural similarity and reduced normalized root mean squared error, with acceleration factors up to 8 in numerical phantom and volunteer studies. This work describes a new perspective on parameter mapping by state tracking. The unscented Kalman filter provides a highly accelerated and efficient paradigm for T2 mapping. © 2015 Wiley Periodicals, Inc.

  11. Nasugbu Malunggay Information And Mapping System

    Directory of Open Access Journals (Sweden)

    RENZ MERVIN A. SALAC

    2014-02-01

    Full Text Available “First Impression, Last” all web based systems are judged by that quote. In modern age technology, people are interested in an eye-catching website, information system, mapping system, etc. It gives more meaning to people when it comes to technology. An information system basically handles the flows and maintenance of information that supports a business or some other operation. It contains information about significant people, places and things within the organisation or in the environment surrounding it. It is any combination of information technology people’s activities that support operations, management and decision making. Moringa or Malunggay, also known as the Miracle Tree, is a multipurpose plant, as the leaves, pods, fruits, flowers, roots and barks of the tree can be utilized. These humble leaves ate a powerhouse of nutritional value. Moringa have a great contribution to our health it gives may health benefits which human beings need for their daily operations. From the statement, the researchers proposed a web based system entitled that can help moringa lovers and citizens of Nasugbu to map it all over Nasugbu together with its species, address, and the date planted and it is uploaded to the internet. The researchers used Waterfall Model as its development process model. The programming language used in the study was PHP, HTML, CSS and Google Map API for the mapping system and MySQL in managing the database. The study have three users; the admin, viewer, and feeder. The feeder will feed additional moringa information to the map that the admin will confirm and at the same time the admin can be a feeder. After getting the overall understanding of the respondents the Nasugbu Malunggay Information and Mapping System was rated Very Good.

  12. A simple method for the design of tension structures combining topological mapping and nonlinear structural analysis

    Directory of Open Access Journals (Sweden)

    Jurado-Piña, R.

    2014-12-01

    Full Text Available When designing a tension structure the shape is not known at the beginning of the process. Form-finding methods allow the designer to obtain an initial shape from given boundary conditions. Several form-finding methods for tension structures are already available in the technical literature; all of them posses certain limitations and drawbacks and no single method is optimal for all problems. The engineer may select the proper combination of methods best suited to the designer’s needs. In this paper it is proposed a combined method to achieve satisfactory equilibrium configurations for fabric tension structures. The force density method (FDM implemented with topological mapping (TM is used as a search engine for the preliminary design, and a procedure that employs nonlinear structural analysis is proposed for final refinement of the initial equilibrium configuration hence allowing the use of the same analysis tool for both refinement of the solution and analysis under loading.Al diseñar una estructura tensada la forma inicial es normalmente desconocida. Los métodos de búsqueda de forma permiten al ingeniero obtener una geometría inicial dadas unas condiciones de contorno. Existen diferentes métodos de búsqueda de formas de equilibrio, pero todos tienen limitaciones y no existe uno único óptimo para cualquier tipo de problema. El ingeniero debe elegir la combinación de métodos que mejor se adapte a sus necesidades. En este artículo se propone un método combinado para generar configuraciones de equilibrio satisfactorias en estructuras tensadas. Como motor de búsqueda para el diseño preliminar se emplea el método de las densidades de fuerza (FDM implementado con mallado en topología (TM, y se propone un procedimiento basado en análisis no lineal de estructuras para el refinamiento de la configuración inicial de equilibrio, permitiéndose así el empleo de las mismas herramientas tanto para el refinamiento de la solución inicial

  13. A Multidisciplinary Phenotyping and Genotyping Analysis of a Mapping Population Enables Quality to Be Combined with Yield in Rice

    Directory of Open Access Journals (Sweden)

    Mariafe Calingacion

    2017-05-01

    Full Text Available In this study a mapping population (F8 of ca 200 progeny from a cross between the commercial rice varieties Apo and IR64 has been both genotyped and phenotyped. A genotyping-by-sequencing approach was first used to identify 2,681 polymorphic SNP markers which gave dense coverage of the genome with a good distribution across all 12 chromosomes. The coefficient of parentage was also low, at 0.13, confirming that the parents are genetically distant from each other. The progeny, together with both parents, were grown under irrigated and water restricted conditions in a randomised block design. All grain was harvested to determine variation in yield across the population. The grains were then polished following standard procedures prior to performing the phenotyping analyses. A Gas Chromatography—Mass Spectrometry approach was used to determine the volatile biochemical profiles of each line and after data curation and processing, discriminatory metabolites were putatively identified based on in-house and commercial spectral libraries. These data were used to predict the potential role of these metabolites in determining differences in aroma between genotypes. A number of QTLs for yield and for individual metabolites have been identified. Following these combined multi-disciplinary analyses, it proved possible to identify a number of lines which appeared to combine the favourable aroma attributes of IR64 with the favourable (higher yield potential of Apo. As such, these lines are excellent candidates to assess further as potential genotypes to work up into a new variety of rice which has both good yield and good quality, thus meeting the needs of both farmer and consumer alike.

  14. Mapping of

    Directory of Open Access Journals (Sweden)

    Sayed M. Arafat

    2014-06-01

    Full Text Available Land cover map of North Sinai was produced based on the FAO-Land Cover Classification System (LCCS of 2004. The standard FAO classification scheme provides a standardized system of classification that can be used to analyze spatial and temporal land cover variability in the study area. This approach also has the advantage of facilitating the integration of Sinai land cover mapping products to be included with the regional and global land cover datasets. The total study area is covering a total area of 20,310.4 km2 (203,104 hectare. The landscape classification was based on SPOT4 data acquired in 2011 using combined multispectral bands of 20 m spatial resolution. Geographic Information System (GIS was used to manipulate the attributed layers of classification in order to reach the maximum possible accuracy. GIS was also used to include all necessary information. The identified vegetative land cover classes of the study area are irrigated herbaceous crops, irrigated tree crops and rain fed tree crops. The non-vegetated land covers in the study area include bare rock, bare soils (stony, very stony and salt crusts, loose and shifting sands and sand dunes. The water bodies were classified as artificial perennial water bodies (fish ponds and irrigated canals and natural perennial water bodies as lakes (standing. The artificial surfaces include linear and non-linear features.

  15. How Narrative Focus and a Statistical Map Shape Health Policy Support Among State Legislators.

    Science.gov (United States)

    Niederdeppe, Jeff; Roh, Sungjong; Dreisbach, Caitlin

    2016-01-01

    This study attempts to advance theorizing about health policy advocacy with combinations of narrative focus and a statistical map in an attempt to increase state legislators' support for policies to address the issue of obesity by reducing food deserts. Specifically, we examine state legislators' responses to variations in narrative focus (individual vs. community) about causes and solutions for food deserts in U.S. communities, and a statistical map (presence vs. absence) depicting the prevalence of food deserts across the United States. Using a Web-based randomized experiment (N=496), we show that narrative focus and the statistical map interact to produce different patterns of cognitive response and support for policies to reduce the prevalence of food deserts. The presence of a statistical map showing the prevalence of food deserts in the United States appeared to matter only when combined with an individual narrative, offsetting the fact that the individual narrative in isolation produced fewer thoughts consistent with the story's persuasive goal and more counterarguments in opposition to environmental causes and solutions for obesity than other message conditions. The image did not have an impact when combined with a story describing a community at large. Cognitive responses fully mediated message effects on intended persuasive outcomes. We conclude by discussing the study's contributions to communication theory and practice.

  16. Topographic mapping

    Science.gov (United States)

    ,

    2008-01-01

    The U.S. Geological Survey (USGS) produced its first topographic map in 1879, the same year it was established. Today, more than 100 years and millions of map copies later, topographic mapping is still a central activity for the USGS. The topographic map remains an indispensable tool for government, science, industry, and leisure. Much has changed since early topographers traveled the unsettled West and carefully plotted the first USGS maps by hand. Advances in survey techniques, instrumentation, and design and printing technologies, as well as the use of aerial photography and satellite data, have dramatically improved mapping coverage, accuracy, and efficiency. Yet cartography, the art and science of mapping, may never before have undergone change more profound than today.

  17. The Effect of Concept Maps on Undergraduate Nursing Students' Critical Thinking.

    Science.gov (United States)

    Garwood, Janet K; Ahmed, Azza H; McComb, Sara A

    The aim of the study was to evaluate the effect of using concept maps as a teaching and learning strategy on students' critical thinking abilities and examine students' perceptions toward concept maps utilizing the PRISMA (Preferred Reporting Items for Systematic Reviews and Meta-Analyses) guidelines. Researchers have found that almost two thirds of nurse graduates do not have adequate critical thinking skills for a beginner nurse. Critical thinking skills are required for safe practice and mandated by accrediting organizations. Nursing educators should consider teaching and learning strategies that promote the development of critical thinking skills. A literature review was conducted using "concept maps, nursing education, and critical thinking" as the combined search terms. Inclusion criteria were studies that measured the effects of concept mapping on critical thinking in nursing students. Seventeen articles were identified. Concept maps may be useful tools to promote critical thinking in nursing education and for applying theory to practice.

  18. Comprehensive Evaluation and Analysis of China's Mainstream Online Map Service Websites

    Science.gov (United States)

    Zhang, H.; Jiang, J.; Huang, W.; Wang, Q.; Gu, X.

    2012-08-01

    With the flourish development of China's Internet market, all kinds of users for map service demand is rising continually, within it contains tremendous commercial interests. Many internet giants have got involved in the field of online map service, and defined it as an important strategic product of the company. The main purpose of this research is to evaluate these online map service websites comprehensively with a model, and analyse the problems according to the evaluation results. Then some corresponding solving measures are proposed, which provides a theoretical and application guidance for the future development of fiercely competitive online map websites. The research consists of three stages: (a) the mainstream online map service websites in China are introduced and the present situation of them is analysed through visit, investigation, consultant, analysis and research. (b) a whole comprehensive evaluation quota system of online map service websites from the view of functions, layout, interaction design color position and so on, combining with the data indexes such as time efficiency, accuracy, objectivity and authority. (c) a comprehensive evaluation to these online map service websites is proceeded based on the fuzzy evaluation mathematical model, and the difficulty that measure the map websites quantitatively is solved.

  19. Combined lineage mapping and gene expression profiling of embryonic brain patterning using ultrashort pulse microscopy and image registration

    Science.gov (United States)

    Gibbs, Holly C.; Dodson, Colin R.; Bai, Yuqiang; Lekven, Arne C.; Yeh, Alvin T.

    2014-12-01

    During embryogenesis, presumptive brain compartments are patterned by dynamic networks of gene expression. The spatiotemporal dynamics of these networks, however, have not been characterized with sufficient resolution for us to understand the regulatory logic resulting in morphogenetic cellular behaviors that give the brain its shape. We have developed a new, integrated approach using ultrashort pulse microscopy [a high-resolution, two-photon fluorescence (2PF)-optical coherence microscopy (OCM) platform using 10-fs pulses] and image registration to study brain patterning and morphogenesis in zebrafish embryos. As a demonstration, we used time-lapse 2PF to capture midbrain-hindbrain boundary morphogenesis and a wnt1 lineage map from embryos during brain segmentation. We then performed in situ hybridization to deposit NBT/BCIP, where wnt1 remained actively expressed, and reimaged the embryos with combined 2PF-OCM. When we merged these datasets using morphological landmark registration, we found that the mechanism of boundary formation differs along the dorsoventral axis. Dorsally, boundary sharpening is dominated by changes in gene expression, while ventrally, sharpening may be accomplished by lineage sorting. We conclude that the integrated visualization of lineage reporter and gene expression domains simultaneously with brain morphology will be useful for understanding how changes in gene expression give rise to proper brain compartmentalization and structure.

  20. Indoor Positioning System Using Depth Maps and Wireless Networks

    Directory of Open Access Journals (Sweden)

    Jaime Duque Domingo

    2016-01-01

    Full Text Available This work presents a new Indoor Positioning System (IPS based on the combination of WiFi Positioning System (WPS and depth maps, for estimating the location of people. The combination of both technologies improves the efficiency of existing methods, based uniquely on wireless positioning techniques. While other positioning systems force users to wear special devices, the system proposed in this paper just requires the use of smartphones, besides the installation of RGB-D sensors in the sensing area. Furthermore, the system is not intrusive, being not necessary to know people’s identity. The paper exposes the method developed for putting together and exploiting both types of sensory information with positioning purposes: the measurements of the level of the signal received from different access points (APs of the wireless network and the depth maps provided by the RGB-D cameras. The obtained results show a significant improvement in terms of positioning with respect to common WiFi-based systems.

  1. RAtional Mapping (RAM) of in-core data

    International Nuclear Information System (INIS)

    Bonalumi, R.A.; Kherani, N.P.

    1983-01-01

    The paper describes and demonstrates a unique processing of in-core flux detector data, such that the detailed in-core power distribution can be derived with great accuracy by combining a specially 'smoothed-out' set of in-core data with neutron diffusion theory. RAM is designed in such a way that erratic detector signals are recognized very efficiently and can be eliminated from the experimental data set: this is achieved by modal expansion of the difference between theoretical fluxes and experimental fluxes at the detector sites. Sensitivity studies have shown that RAM is quite stable, does not absorb the 'wild' detector errors in the mapping procedure and results in mapped fluxes with errors about three times smaller than would be obtained by direct interpolation of detector readings

  2. Real time curriculum map for internal medicine residency

    Directory of Open Access Journals (Sweden)

    Roberts J Mark

    2007-11-01

    Full Text Available Abstract Background To manage the voluminous formal curriculum content in a limited amount of structured teaching time, we describe the development and evaluation of a curriculum map for academic half days (AHD in a core internal medicine residency program. Methods We created a 3-year cyclical curriculum map (an educational tool combining the content, methodology and timetabling of structured teaching, comprising a matrix of topics under various specialties/themes and corresponding AHD hours. All topics were cross-matched against the ACP-ASIM in-training examination, and all hours were colour coded based on the categories of core competencies. Residents regularly updated the map on a real time basis. Results There were 208 topics covered in 283 AHD hours. All topics represented core competencies with minimal duplication (78% covered once in 3 years. Only 42 hours (15% involved non-didactic teaching, which increased after implementation of the map (18–19 hours/year versus baseline 5 hours/year. Most AHD hours (78% focused on medical expert competencies. Resident satisfaction (90% response was high throughout (range 3.64 ± 0.21, 3.84 ± 0.14 out of 4, which improved after 1 year but returned to baseline after 2 years. Conclusion We developed and implemented an internal medicine curriculum map based on real time resident input, with minimal topic duplication and high resident satisfaction. The map provided an opportunity to balance didactic versus non-didactic teaching, and teaching on medical versus non medical expert topics.

  3. Combining Multiple Types of Intelligence to Generate Probability Maps of Moving Targets

    Science.gov (United States)

    2013-09-01

    normalization coefficient k similar to Demspter-Shafer’s combination rule. d. Mass Mean This rule of combination is the most straightforward one... coefficient , we can state that without normalizing, the updated distribution is: fupdate t   qk k t M 1 qk n k t M        (3.3) 36...Lawrence, KS. Chen, Z. (2003). Bayesian filtering: From Kalman filters to particle filters and beyond. Technical report, McMaster University. Dempster

  4. Differentiation of orbital lymphoma and idiopathic orbital inflammatory pseudotumor: combined diagnostic value of conventional MRI and histogram analysis of ADC maps.

    Science.gov (United States)

    Ren, Jiliang; Yuan, Ying; Wu, Yingwei; Tao, Xiaofeng

    2018-05-02

    The overlap of morphological feature and mean ADC value restricted clinical application of MRI in the differential diagnosis of orbital lymphoma and idiopathic orbital inflammatory pseudotumor (IOIP). In this paper, we aimed to retrospectively evaluate the combined diagnostic value of conventional magnetic resonance imaging (MRI) and whole-tumor histogram analysis of apparent diffusion coefficient (ADC) maps in the differentiation of the two lesions. In total, 18 patients with orbital lymphoma and 22 patients with IOIP were included, who underwent both conventional MRI and diffusion weighted imaging before treatment. Conventional MRI features and histogram parameters derived from ADC maps, including mean ADC (ADC mean ), median ADC (ADC median ), skewness, kurtosis, 10th, 25th, 75th and 90th percentiles of ADC (ADC 10 , ADC 25 , ADC 75 , ADC 90 ) were evaluated and compared between orbital lymphoma and IOIP. Multivariate logistic regression analysis was used to identify the most valuable variables for discriminating. Differential model was built upon the selected variables and receiver operating characteristic (ROC) analysis was also performed to determine the differential ability of the model. Multivariate logistic regression showed ADC 10 (P = 0.023) and involvement of orbit preseptal space (P = 0.029) were the most promising indexes in the discrimination of orbital lymphoma and IOIP. The logistic model defined by ADC 10 and involvement of orbit preseptal space was built, which achieved an AUC of 0.939, with sensitivity of 77.30% and specificity of 94.40%. Conventional MRI feature of involvement of orbit preseptal space and ADC histogram parameter of ADC 10 are valuable in differential diagnosis of orbital lymphoma and IOIP.

  5. MRSA: a density-equalizing mapping analysis of the global research architecture.

    Science.gov (United States)

    Addicks, Johann P; Uibel, Stefanie; Jensen, Anna-Maria; Bundschuh, Matthias; Klingelhoefer, Doris; Groneberg, David A

    2014-09-30

    Methicillin-resistant Staphylococcus aureus (MRSA) has evolved as an alarming public health thread due to its global spread as hospital and community pathogen. Despite this role, a scientometric analysis has not been performed yet. Therefore, the NewQIS platform was used to conduct a combined density-equalizing mapping and scientometric study. As database, the Web of Science was used, and all entries between 1961 and 2007 were analyzed. In total, 7671 entries were identified. Density equalizing mapping demonstrated a distortion of the world map for the benefit of the USA as leading country with a total output of 2374 publications, followed by the UK (1030) and Japan (862). Citation rate analysis revealed Portugal as leading country with a rate of 35.47 citations per article, followed by New Zealand and Denmark. Country cooperation network analyses showed 743 collaborations with US-UK being most frequent. Network citation analyses indicated the publications that arose from the cooperation of USA and France as well as USA and Japan as the most cited (75.36 and 74.55 citations per collaboration article, respectively). The present study provides the first combined density-equalizing mapping and scientometric analysis of MRSA research. It illustrates the global MRSA research architecture. It can be assumed that this highly relevant topic for public health will achieve even greater dimensions in the future.

  6. MAP user's manual copyright

    International Nuclear Information System (INIS)

    Pillsbury, R.D. Jr.

    1991-12-01

    The program MITMAP represents a set of general purpose, two- dimensional, finite element programs for the calculation of magnetic fields. It consists of the program MAP and MAP2DJ. The two programs are used to solve different electromagnetic problems, but they have a common set of subrountines for pre- and postprocessing. Originally separate programs, they have been combined to make modification easier. The manuals, however, will remain separate. The program MAP is described in this manual. MAP is applicable to the class of problems with two-dimensional-planar or axisymmetric - geometries, in which the current density and the magnetic vector potential have only a single nonvanishing component. The single component is associated with the direction that is perpendicular to the plane of the problem and is invariant with respect to that direction. Maxwell's equations can be reduced to a solver diffusion equation in terms of the single, nonvanishing component of the magnetic vector potential for planar problems and to a single component of a vector potential for planar problems and to a single component of a vector diffusion equation for axisymmetric problems. The magnetic permeability appears in the governing equation. The permeability may be a function of the magnetic flux density. In addition, any electrically conducting material present will have eddy currents induced by a time varying magnetic field. These eddy currents must be included in the solution process. This manual provides a description of the structure of the input data and output for the program. There are several example problems presented that illustrate the major program features. Appendices are included that contain a derivation of the governing equations and the application of the finite element method to the solution of the equations

  7. Big data; sensor networks and remotely-sensed data for mapping; feature extraction from lidar

    Science.gov (United States)

    Tlhabano, Lorato

    2018-05-01

    Unmanned aerial vehicles (UAVs) can be used for mapping in the close range domain, combining aerial and terrestrial photogrammetry and now the emergence of affordable platforms to carry these technologies has opened up new opportunities for mapping and modeling cadastral boundaries. At the current state mainly low cost UAVs fitted with sensors are used in mapping projects with low budgets, the amount of data produced by the UAVs can be enormous hence the need for big data techniques' and concepts. The past couple of years have witnessed the dramatic rise of low-cost UAVs fitted with high tech Lidar sensors and as such the UAVS have now reached a level of practical reliability and professionalism which allow the use of these systems as mapping platforms. UAV based mapping provides not only the required accuracy with respect to cadastral laws and policies as well as requirements for feature extraction from the data sets and maps produced, UAVs are also competitive to other measurement technologies in terms of economic aspects. In the following an overview on how the various technologies of UAVs, big data concepts and lidar sensor technologies can work together to revolutionize cadastral mapping particularly in Africa and as a test case Botswana in particular will be used to investigate these technologies. These technologies can be combined to efficiently provide cadastral mapping in difficult to reach areas and over large areas of land similar to the Land Administration Procedures, Capacity and Systems (LAPCAS) exercise which was recently undertaken by the Botswana government, we will show how the uses of UAVS fitted with lidar sensor and utilizing big data concepts could have reduced not only costs and time for our government but also how UAVS could have provided more detailed cadastral maps.

  8. Conformal geometry and quasiregular mappings

    CERN Document Server

    Vuorinen, Matti

    1988-01-01

    This book is an introduction to the theory of spatial quasiregular mappings intended for the uninitiated reader. At the same time the book also addresses specialists in classical analysis and, in particular, geometric function theory. The text leads the reader to the frontier of current research and covers some most recent developments in the subject, previously scatterd through the literature. A major role in this monograph is played by certain conformal invariants which are solutions of extremal problems related to extremal lengths of curve families. These invariants are then applied to prove sharp distortion theorems for quasiregular mappings. One of these extremal problems of conformal geometry generalizes a classical two-dimensional problem of O. Teichmüller. The novel feature of the exposition is the way in which conformal invariants are applied and the sharp results obtained should be of considerable interest even in the two-dimensional particular case. This book combines the features of a textbook an...

  9. Maps of the Auditory Cortex.

    Science.gov (United States)

    Brewer, Alyssa A; Barton, Brian

    2016-07-08

    One of the fundamental properties of the mammalian brain is that sensory regions of cortex are formed of multiple, functionally specialized cortical field maps (CFMs). Each CFM comprises two orthogonal topographical representations, reflecting two essential aspects of sensory space. In auditory cortex, auditory field maps (AFMs) are defined by the combination of tonotopic gradients, representing the spectral aspects of sound (i.e., tones), with orthogonal periodotopic gradients, representing the temporal aspects of sound (i.e., period or temporal envelope). Converging evidence from cytoarchitectural and neuroimaging measurements underlies the definition of 11 AFMs across core and belt regions of human auditory cortex, with likely homology to those of macaque. On a macrostructural level, AFMs are grouped into cloverleaf clusters, an organizational structure also seen in visual cortex. Future research can now use these AFMs to investigate specific stages of auditory processing, key for understanding behaviors such as speech perception and multimodal sensory integration.

  10. REGIONAL GEOLGICAL MAPPING IN TROPICAL ENVIRONMENTS USING LANDSAT TM AND SRTM REMOTE SENSING DATA

    Directory of Open Access Journals (Sweden)

    A. Beiranvand Pour

    2015-10-01

    Full Text Available Landsat Thematic Mapper (TM and Shuttle Radar Topography Mission (SRTM data were used to produce geological maps in tropical environments. Lineament, lithology and landform maps were produced for all states in peninsular Malaysia in this study. Kedah, Perak and Terengganu states have been selected as case studies to demonstrate the results of the data and techniques used. Directional filtering technique was applied to Landsat TM bands 4, 5 and 3 for lineament mapping. The lithology map was produced using Landsat TM bands combination consist of bands 4, 3 and 2. Digital elevation model and landform map were produced using SRTM data in 3 Dimension (3D and 2 Dimension (2D perspective views, respectively. The produced geological maps and the remote sensing data and methods applied in this study are mostly appropriate for hazard risk mapping applications and mineral exploration projects in the peninsular Malaysia and tropical environments.

  11. Biomass energy inventory and mapping system

    Energy Technology Data Exchange (ETDEWEB)

    Kasile, J.D. [Ohio State Univ., Columbus, OH (United States)

    1993-12-31

    A four-stage biomass energy inventory and mapping system was conducted for the entire State of Ohio. The product is a set of maps and an inventory of the State of Ohio. The set of amps and an inventory of the State`s energy biomass resource are to a one kilometer grid square basis on the Universal Transverse Mercator (UTM) system. Each square kilometer is identified and mapped showing total British Thermal Unit (BTU) energy availability. Land cover percentages and BTU values are provided for each of nine biomass strata types for each one kilometer grid square. LANDSAT satellite data was used as the primary stratifier. The second stage sampling was the photointerpretation of randomly selected one kilometer grid squares that exactly corresponded to the LANDSAT one kilometer grid square classification orientation. Field sampling comprised the third stage of the energy biomass inventory system and was combined with the fourth stage sample of laboratory biomass energy analysis using a Bomb calorimeter and was then used to assign BTU values to the photointerpretation and to adjust the LANDSAT classification. The sampling error for the whole system was 3.91%.

  12. A Remote-operated System to Map Radiation Dose in the Fukushima Daiichi Primary Containment Vessel

    Science.gov (United States)

    Nancekievill, M.; Jones, A. R.; Joyce, M. J.; Lennox, B.; Watson, S.; Katakura, J.; Okumura, K.; Kamada, S.; Katoh, M.; Nishimura, K.

    2018-01-01

    This paper describes the development of a submersible system based on a remote-operated vehicle coupled with radiation detectors to map the interior of the reactors at the Fukushima Daiichi nuclear power station. It has the aim oflocating fuel debris. The AVEXIS submersible vehicle used in this study has been designed as a low-cost, potentially disposable, inspection platform that is the smallest of its class and is capable of being deployed through a 150 mm diameter access pipe. To map the gamma-ray environment, a cerium bromide scintillator detector with a small form factor has been incorporated into the AVEXIS to identify radioactive isotopes via gamma-ray spectroscopy. This provides the combined system with the potential to map gamma-ray spectra and particle locations throughout submerged, contaminated facilities, such as Units 1, 2 and 3 of the Fukushima Daiichi nuclear power plant. The hypothesis of this research is to determine the sensitivity of the combined system in a submerged environment that replicates the combination of gamma radiation and water submersion but at lower dose rates.

  13. Quantification of elemental segregation to lath and grain boundaries in low-alloy steel by STEM X-ray mapping combined with the zeta-factor method

    CERN Document Server

    Watanabe, M

    2003-01-01

    Elemental segregation to two types of boundaries in a low-alloy steel were studied by X-ray mapping using scanning transmission electron microscopy (STEM). To quantify the acquired X-ray maps, the zeta-factor method was applied, and then the compositional maps and the thickness map were obtained. Based on these quantified maps, further information about the analytical sensitivity of solute-element detection and the spatial resolution of segregation analysis were extracted. Furthermore, maps of the number of excess atoms on the boundary were also calculated from the compositional and thickness maps. It was concluded that Cr, Ni and Mo are co-segregated on the prior-austenite grain boundary and only Ni was segregated on the lath boundary. (orig.)

  14. Large-Scale Mapping of Carbon Stocks in Riparian Forests with Self-Organizing Maps and the k-Nearest-Neighbor Algorithm

    Directory of Open Access Journals (Sweden)

    Leonhard Suchenwirth

    2014-07-01

    Full Text Available Among the machine learning tools being used in recent years for environmental applications such as forestry, self-organizing maps (SOM and the k-nearest neighbor (kNN algorithm have been used successfully. We applied both methods for the mapping of organic carbon (Corg in riparian forests due to their considerably high carbon storage capacity. Despite the importance of floodplains for carbon sequestration, a sufficient scientific foundation for creating large-scale maps showing the spatial Corg distribution is still missing. We estimated organic carbon in a test site in the Danube Floodplain based on RapidEye remote sensing data and additional geodata. Accordingly, carbon distribution maps of vegetation, soil, and total Corg stocks were derived. Results were compared and statistically evaluated with terrestrial survey data for outcomes with pure remote sensing data and for the combination with additional geodata using bias and the Root Mean Square Error (RMSE. Results show that SOM and kNN approaches enable us to reproduce spatial patterns of riparian forest Corg stocks. While vegetation Corg has very high RMSEs, outcomes for soil and total Corg stocks are less biased with a lower RMSE, especially when remote sensing and additional geodata are conjointly applied. SOMs show similar percentages of RMSE to kNN estimations.

  15. Machine learning-based dual-energy CT parametric mapping.

    Science.gov (United States)

    Su, Kuan-Hao; Kuo, Jung-Wen; Jordan, David W; Van Hedent, Steven; Klahr, Paul; Wei, Zhouping; Al Helo, Rose; Liang, Fan; Qian, Pengjiang; Pereira, Gisele C; Rassouli, Negin; Gilkeson, Robert C; Traughber, Bryan J; Cheng, Chee-Wai; Muzic, Raymond F

    2018-05-22

    The aim is to develop and evaluate machine learning methods for generating quantitative parametric maps of effective atomic number (Zeff), relative electron density (ρe), mean excitation energy (Ix), and relative stopping power (RSP) from clinical dual-energy CT data. The maps could be used for material identification and radiation dose calculation. Machine learning methods of historical centroid (HC), random forest (RF), and artificial neural networks (ANN) were used to learn the relationship between dual-energy CT input data and ideal output parametric maps calculated for phantoms from the known compositions of 13 tissue substitutes. After training and model selection steps, the machine learning predictors were used to generate parametric maps from independent phantom and patient input data. Precision and accuracy were evaluated using the ideal maps. This process was repeated for a range of exposure doses, and performance was compared to that of the clinically-used dual-energy, physics-based method which served as the reference. The machine learning methods generated more accurate and precise parametric maps than those obtained using the reference method. Their performance advantage was particularly evident when using data from the lowest exposure, one-fifth of a typical clinical abdomen CT acquisition. The RF method achieved the greatest accuracy. In comparison, the ANN method was only 1% less accurate but had much better computational efficiency than RF, being able to produce parametric maps in 15 seconds. Machine learning methods outperformed the reference method in terms of accuracy and noise tolerance when generating parametric maps, encouraging further exploration of the techniques. Among the methods we evaluated, ANN is the most suitable for clinical use due to its combination of accuracy, excellent low-noise performance, and computational efficiency. . © 2018 Institute of Physics and Engineering in

  16. Integrated hard and soft bottom seafloor substrate map of Ofu-Olosega, American Samoa, combining NOAA Pacific Island Fisheries Science Center Coral Reef Ecosystem Division hard-soft substrate map with NOAA Center for Coastal Monitoring and Assessment Biogeography Program shallow-water benthic habitat map of American Samoa.

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Hard and soft seafloor substrate map, derived from integrating two existing map products: hard and soft seafloor substrate map derived from an unsupervised...

  17. USGS Map Indices Overlay Map Service from The National Map

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — The USGS Map Indices service from The National Map (TNM) consists of 1x1 Degree, 30x60 Minute (100K), 15 Minute (63K), 7.5 Minute (24K), and 3.75 Minute grid...

  18. Fostering clinical reasoning in physiotherapy : Comparing the effects of concept map study and concept map completion after example study in novice and advanced learners

    NARCIS (Netherlands)

    Montpetit-tourangeau, Katherine; Dyer, Joseph-omer; Hudon, Anne; Windsor, Monica; Charlin, Bernard; Mamede, Sílvia; Van Gog, Tamara

    2017-01-01

    Background: Health profession learners can foster clinical reasoning by studying worked examples presenting fully worked out solutions to a clinical problem. It is possible to improve the learning effect of these worked examples by combining them with other learning activities based on concept maps.

  19. Evaluating the new soil erosion map of Hungary

    Science.gov (United States)

    Waltner, István; Centeri, Csaba; Takács, Katalin; Pirkó, Béla; Koós, Sándor; László, Péter; Pásztor, László

    2017-04-01

    With growing concerns on the effects of climate change and land use practices on our soil resources, soil erosion by water is becoming a significant issue internationally. Since the 1964 publication of the first soil erosion map of Hungary, there have been several attempts to provide a countrywide assessment of erosion susceptibility. However, there has been no up-to-date map produced in the last decade. In 2016, a new, 1:100 000 scale soil erosion map was published, based on available soil, elevation, land use and meteorological data for the extremely wet year of 2010. The map utilized combined outputs for two spatially explicit methods: the widely used empirical Universal Soil Loss Equation (USLE) and the process-based Pan-European Soil Erosion Risk Assessment (PESERA) models. The present study aims to provide a detailed analysis of the model results. In lieu of available national monitoring data, information from other sources were used. The Soil Degradation Subsystem (TDR) of the National Environmental Information System (OKIR) is a digital database based on a soil survey and farm dairy data collected from representative farms in Hungary. During the survey all kind of degradation forms - including soil erosion - were considered. Agricultural and demographic data was obtained from the Hungarian Central Statistical Office (KSH). Data from an interview-based survey was also used in an attempt to assess public awareness of soil erosion risks. Point-based evaluation of the model results was complemented with cross-regional assessment of soil erosion estimates. This, combined with available demographic information provides us with an opportunity to address soil erosion on a community level, with the identification of regions with the highest risk of being affected by soil erosion.

  20. Integrated hard and soft bottom seafloor substrate map of Rose Atoll, American Samoa combining NOAA Pacific Island Fisheries Science Center Coral Reef Ecosystem Division hard-soft substrate maps with NOAA Center for Coastal Monitoring and Assessment Biogeography Program shallow-water benthic habitat map of American Samoa.

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Hard and soft seafloor substrate map, derived from integrating two existing map products: hard and soft substrate maps derived from an unsupervised classification of...

  1. Four-dimensional maps of the human somatosensory system.

    Science.gov (United States)

    Avanzini, Pietro; Abdollahi, Rouhollah O; Sartori, Ivana; Caruana, Fausto; Pelliccia, Veronica; Casaceli, Giuseppe; Mai, Roberto; Lo Russo, Giorgio; Rizzolatti, Giacomo; Orban, Guy A

    2016-03-29

    A fine-grained description of the spatiotemporal dynamics of human brain activity is a major goal of neuroscientific research. Limitations in spatial and temporal resolution of available noninvasive recording and imaging techniques have hindered so far the acquisition of precise, comprehensive four-dimensional maps of human neural activity. The present study combines anatomical and functional data from intracerebral recordings of nearly 100 patients, to generate highly resolved four-dimensional maps of human cortical processing of nonpainful somatosensory stimuli. These maps indicate that the human somatosensory system devoted to the hand encompasses a widespread network covering more than 10% of the cortical surface of both hemispheres. This network includes phasic components, centered on primary somatosensory cortex and neighboring motor, premotor, and inferior parietal regions, and tonic components, centered on opercular and insular areas, and involving human parietal rostroventral area and ventral medial-superior-temporal area. The technique described opens new avenues for investigating the neural basis of all levels of cortical processing in humans.

  2. Influência da distância entre passadas de colhedora equipada com monitor de colheita na precisão dos mapas de produtividade na cultura do milho Influence of distance between combines equipped with yield monitors on the precision of yield maps for corn crops

    Directory of Open Access Journals (Sweden)

    Cláudio L. Bazzi

    2008-06-01

    Full Text Available Um dos entraves para a maior expansão da agricultura de precisão está, principalmente, no elevado custo dos equipamentos a serem utilizados. A geração de mapas de produtividade é a fase de mais fácil execução na agricultura de precisão. Entretanto, quando várias colhedoras operam simultaneamente em uma determinada área, nem sempre é possível dispor de monitores de colheita em todas as máquinas. Assim, neste trabalho, foi avaliado o decréscimo da precisão em mapas de produtividade obtidos a partir de áreas onde se utilizaram colhedoras não-equipadas com monitor de colheita associadas a colhedoras monitoradas. Também foram comparados os métodos de interpolação "inverso da distância ao quadrado" e "krigagem". Inicialmente, a interpolação do mapa com todos os pontos de amostragem (original foi gerada e, a partir dessa, foi feita a eliminação de passadas de modo a obter os mapas simulados. Na comparação entre os mapas simulados e o original, foi utilizado o coeficiente de desvio relativo - CDR, e o índice kappa. O número de passadas eliminadas diminuiu a precisão dos mapas em ambos os métodos de interpolação. Sendo assim, a quantidade mínima necessária de monitores em um conjunto de colhedoras depende da precisão desejada. Portanto, as máquinas devem ser intercaladas de maneira que as amostras sejam coletadas uniformemente por toda a área a ser colhida.One of the main obstacles to the larger expansion of precision agriculture is the high cost of the equipments to be used. The generation of yield maps is the easiest step in the sequence of the precision agriculture process. Nevertheless, the availability of yield monitors for all the machines is not always possible when several combines are concomitantly harvesting in a given area. Within this context, this research was carried out aiming to evaluate the decrease of precision of yield maps obtained from data collected in areas where combines not equipped with

  3. Interactive Maps on War and Peace: A WebGIS Application for Civic Education

    Science.gov (United States)

    Wirkus, Lars; Strunck, Alexander

    2013-04-01

    the map. Data tables are offered if the copyright of datasets allows such use. All data of all thematic modules is presented in country profiles in a consolidated manner. The portal has been created with Open Source Software. PostgreSQL and PostGIS, MapServer, OpenLayers, MapProxy and cmsmadesimple are combined to manipulate and transform global data sets into interactive thematic maps. A purpose-programmed layer selection menu enables users to select single layers or to combine up to three matching layers from all possible pre-set layer combinations. This applies both to fields of topics within a module and across various modules. Due to the complexity of the structure and visualization constraints, no more than three layers can be combined. The WebGIS-based information portal on war and peace is an excellent example of how GIS technologies can be used for education and outreach. Not only can they play a crucial role in supporting the educational mandate and mission of certain institutions. They can also directly support various target groups in obtaining the knowledge needed by providing a collection of straight forward designed, ready-to-use data, info graphics and maps.

  4. Hazard Map of the Poás Volcano

    Directory of Open Access Journals (Sweden)

    Gustavo Barrantes Castillo

    2015-07-01

    Full Text Available The Poás volcano presents a series of hazards to the lives and activities of the communities in its surroundings; these hazards include ash fall, volcanic gases, ballistic projection, pyroclastic flows, lahars and lava flows. In the study described in this article, risks were zoned and integrated to form combined hazard maps for later use in territorial planning processes. With respect to methodology, the study was based on a heuristic approximation, which was supported with cartographic, geomorphological, and historical impact criteria to achieve a suitable product in terms of scale and ease of interpretation. These maps present greater detail and integration than other works and cartographies of volcanic hazards in Costa Rica.

  5. MAP Training My Brain™: Meditation Plus Aerobic Exercise Lessens Trauma of Sexual Violence More Than Either Activity Alone

    Directory of Open Access Journals (Sweden)

    Tracey J. Shors

    2018-04-01

    Full Text Available Sexual violence against women often leads to post-traumatic stress disorder (PTSD, a mental illness characterized by intrusive thoughts and memories about the traumatic event (Shors and Millon, 2016. These mental processes are obviously generated by the brain but often felt in the body. MAP Training My Brain™ is a novel clinical intervention that combines mental training of the brain with physical training of the body (Curlik and Shors, 2013; Shors et al., 2014. Each training session begins with 20-min of sitting meditation, followed by 10-min of slow-walking meditation, and ending with 30-min of aerobic exercise at 60–80% of the maximum heart rate (see maptrainmybrain.com. In previous studies, the combination of mental and physical (MAP training together significantly reduced symptoms of depression and ruminative thoughts, while reducing anxiety (Shors et al., 2014, 2017; Alderman et al., 2016. We also documented positive changes in brain activity during cognitive control and whole-body oxygen consumption in various populations. In the present pilot study, we asked whether the combination of meditation and aerobic exercise during MAP Training would reduce trauma-related thoughts, ruminations, and memories in women and if so, whether the combination would be more effective than either activity alone. To test this hypothesis, interventions were provided to a group of women (n = 105, many of whom had a history of sexual violence (n = 32. Groups were trained with (1 MAP Training, (2 meditation alone, (3 aerobic exercise alone, or (4 not trained. Individuals in training groups completed two sessions a week for at least 6 weeks. MAP Training My Brain™ significantly reduced post-traumatic cognitions and ruminative thoughts in women with a history of sexual violence, whereas meditation alone, and exercise alone did not. MAP Training significantly enhanced a measure of self-worth, whereas meditation and exercise alone did not. Similar positive

  6. MAP Training My Brain™: Meditation Plus Aerobic Exercise Lessens Trauma of Sexual Violence More Than Either Activity Alone.

    Science.gov (United States)

    Shors, Tracey J; Chang, Han Y M; Millon, Emma M

    2018-01-01

    Sexual violence against women often leads to post-traumatic stress disorder (PTSD), a mental illness characterized by intrusive thoughts and memories about the traumatic event (Shors and Millon, 2016). These mental processes are obviously generated by the brain but often felt in the body. MAP Training My Brain ™ is a novel clinical intervention that combines mental training of the brain with physical training of the body (Curlik and Shors, 2013; Shors et al., 2014). Each training session begins with 20-min of sitting meditation, followed by 10-min of slow-walking meditation, and ending with 30-min of aerobic exercise at 60-80% of the maximum heart rate (see maptrainmybrain.com). In previous studies, the combination of mental and physical (MAP) training together significantly reduced symptoms of depression and ruminative thoughts, while reducing anxiety (Shors et al., 2014, 2017; Alderman et al., 2016). We also documented positive changes in brain activity during cognitive control and whole-body oxygen consumption in various populations. In the present pilot study, we asked whether the combination of meditation and aerobic exercise during MAP Training would reduce trauma-related thoughts, ruminations, and memories in women and if so, whether the combination would be more effective than either activity alone. To test this hypothesis, interventions were provided to a group of women ( n = 105), many of whom had a history of sexual violence ( n = 32). Groups were trained with (1) MAP Training, (2) meditation alone, (3) aerobic exercise alone, or (4) not trained. Individuals in training groups completed two sessions a week for at least 6 weeks. MAP Training My Brain ™ significantly reduced post-traumatic cognitions and ruminative thoughts in women with a history of sexual violence, whereas meditation alone, and exercise alone did not. MAP Training significantly enhanced a measure of self-worth, whereas meditation and exercise alone did not. Similar positive effects

  7. Deriving soil function maps to assess related ecosystem services using imaging spectroscopy in the Lyss agricultural area, Switzerland

    Science.gov (United States)

    Diek, Sanne; de Jong, Rogier; Braun, Daniela; Böhler, Jonas; Schaepman, Michael

    2014-05-01

    Soils play an important role in the benefits offered by ecosystems services. In densely populated Switzerland soils are a scarce resource, with high pressure on services ranging from urban expansion to over-utilization. Key change drivers include erosion, soil degradation, land management change and (chemical) pollution, which should be taken into consideration. Therefore there is an emerging need for an integrated, sustainable and efficient system assessing the management of soil and land as a resource. The use of remote sensing can offer spatio-temporal and quantitative information of extended areas. In particular imaging spectroscopy has shown to perfectly complement existing sampling schemes as secondary information for digital soil mapping. Although only the upper-most layer of soil interacts with light when using reflectance spectroscopy, it still can offer valuable information that can be utilized by farmers and decision makers. Fully processed airborne imaging spectrometer data from APEX as well as land cover classification for the agricultural area in Lyss were available. Based on several spectral analysis methods we derived multiple soil properties, including soil organic matter, soil texture, and mineralogy; complemented by vegetation parameters, including leaf area index, chlorophyll content, pigment distribution, and water content. The surface variables were retrieved using a combination of index-based and physically-based retrievals. Soil properties in partly to fully vegetated areas were interpolated using regression kriging based methods. This allowed the continuous assessment of potential soil functions as well as non-contiguous maps of abundances of combined soil and vegetation parameters. Based on a simple regression model we could make a rough estimate of ecosystem services. This provided the opportunity to look at the differences between the interpolated soil function maps and the non-contiguous (but combined) vegetation and soil function maps

  8. Combining ambiguous chemical shift mapping with structure-based backbone and NOE assignment from 15N-NOESY

    KAUST Repository

    Jang, Richard; Gao, Xin; Li, Ming

    2011-01-01

    to these difficulties, the mapping is typically done manually or semi-automatically. However, automated methods are necessary for high-throughput drug screening. We present PeakWalker, a novel peak walking algorithm for fast-exchange systems that models the errors

  9. Story Maps as an Effective Social Medium for Data Synthesis, Communication, and Dissemination

    Science.gov (United States)

    Wright, D. J.; Verrill, A.; Artz, M.; Deming, R.

    2014-12-01

    The story map is a new medium for sharing not only data, but also photos, videos, sounds, and maps, as a way to tell a specific and compelling story by way of that content. It is emerging as a popular and effective social media too. The user may employ some fairly sophisticated cartographic functionality without advanced training in cartography or GIS. Story maps are essentially web map applications built from web maps, which in turn are built from web-accessible data (including OGC WMS, WFS). This paper will emphasize the approaches and technologies of web-based GIS to tell "stories" about important connections among scientists, resource managers, and policy makers focused on oceans and coasts within the US; and how combining the new medium of "intelligent Web maps" with text, multimedia content, and intuitive user experiences has a great potential to synthesize the data, and it primary interpretative message in order to inform, educate, and inspire about a wide variety of ocean science and policy issues.

  10. Irradiation in combined treatments and food safety

    International Nuclear Information System (INIS)

    Lacroix Monique; Dussault Dominic; Turgis Melanie; Salmieri Stephane; Perlette Takala; Vu Dang Khanh; Ayari Samia

    2013-01-01

    Irradiation combined with other processes can contribute to insuring food safety to consumers and controlling severe losses during transportation and commercialisation. We have demonstrated that using in synergy with other treatments; a lower dose could be used to eliminate pathogenic bacteria and permit a better protection of the sensorial quality and to prolong the shelf life of foods. Results indicated that some bacteria are more sensitive to irradiation under modified atmosphere (MAP) and the presence of active compound can increase the bacterial radiosensitivity by more than 4 times under air and by more than 10 times under MAP. Mild heat treatment or addition of natural antimicrobial compounds before irradiation treatment has also permitted an increase of Bacillus cereus radiosensitization. An increase of the bacterial radiosensitization of 1.5 and 1.56 was respectively observed. The effectiveness of the use of edible coating containing natural antimicrobial compounds, modified atmosphere packaging (MAP) or mild treatment before irradiation treatment was demonstrated in order to inactivate Listeria monocytogenes, Salmonella typhimurium, Escherichia coli and Bacillus cereus growth or B. cereus spore germination, to increase the bacterial sensitivity to irradiation, to reduce the water loss and to extend the shelf life of the food when stored at 4 deg C. Also, the use of edible coating previously crosslinked by irradiation have permitted a better control of the active compounds release. Studies of combined treatments were used in ready to eat vegetables, fruits and meat products. (author)

  11. Mapping of nitrogen risks

    DEFF Research Database (Denmark)

    Blicher-Mathiesen, Gitte; Andersen, Hans Estrup; Carstensen, Jacob

    2014-01-01

    risk mapping part of the tool, we combined a modelled root zone N leaching with a catchment-specific N reduction factor which in combination determines the N load to the marine recipient. N leaching was calculated using detailed information of agricultural management from national databases as well...... will be more effective if they are implemented in N loss hot spots or risk areas. Additionally, the highly variable N reduction in groundwater and surface waters needs to be taken into account as this strongly influences the resulting effect of mitigation measures. The objectives of this study were to develop...... and apply an N risk tool to the entire agricultural land area in Denmark. The purpose of the tool is to identify high risk areas, i.e. areas which contribute disproportionately much to diffuse N losses to the marine recipient, and to suggest cost-effective measures to reduce losses from risk areas. In the N...

  12. An integrated pan-tropical biomass map using multiple reference datasets.

    Science.gov (United States)

    Avitabile, Valerio; Herold, Martin; Heuvelink, Gerard B M; Lewis, Simon L; Phillips, Oliver L; Asner, Gregory P; Armston, John; Ashton, Peter S; Banin, Lindsay; Bayol, Nicolas; Berry, Nicholas J; Boeckx, Pascal; de Jong, Bernardus H J; DeVries, Ben; Girardin, Cecile A J; Kearsley, Elizabeth; Lindsell, Jeremy A; Lopez-Gonzalez, Gabriela; Lucas, Richard; Malhi, Yadvinder; Morel, Alexandra; Mitchard, Edward T A; Nagy, Laszlo; Qie, Lan; Quinones, Marcela J; Ryan, Casey M; Ferry, Slik J W; Sunderland, Terry; Laurin, Gaia Vaglio; Gatti, Roberto Cazzolla; Valentini, Riccardo; Verbeeck, Hans; Wijaya, Arief; Willcock, Simon

    2016-04-01

    We combined two existing datasets of vegetation aboveground biomass (AGB) (Proceedings of the National Academy of Sciences of the United States of America, 108, 2011, 9899; Nature Climate Change, 2, 2012, 182) into a pan-tropical AGB map at 1-km resolution using an independent reference dataset of field observations and locally calibrated high-resolution biomass maps, harmonized and upscaled to 14 477 1-km AGB estimates. Our data fusion approach uses bias removal and weighted linear averaging that incorporates and spatializes the biomass patterns indicated by the reference data. The method was applied independently in areas (strata) with homogeneous error patterns of the input (Saatchi and Baccini) maps, which were estimated from the reference data and additional covariates. Based on the fused map, we estimated AGB stock for the tropics (23.4 N-23.4 S) of 375 Pg dry mass, 9-18% lower than the Saatchi and Baccini estimates. The fused map also showed differing spatial patterns of AGB over large areas, with higher AGB density in the dense forest areas in the Congo basin, Eastern Amazon and South-East Asia, and lower values in Central America and in most dry vegetation areas of Africa than either of the input maps. The validation exercise, based on 2118 estimates from the reference dataset not used in the fusion process, showed that the fused map had a RMSE 15-21% lower than that of the input maps and, most importantly, nearly unbiased estimates (mean bias 5 Mg dry mass ha(-1) vs. 21 and 28 Mg ha(-1) for the input maps). The fusion method can be applied at any scale including the policy-relevant national level, where it can provide improved biomass estimates by integrating existing regional biomass maps as input maps and additional, country-specific reference datasets. © 2015 John Wiley & Sons Ltd.

  13. Designing and Testing a UAV Mapping System for Agricultural Field Surveying

    Directory of Open Access Journals (Sweden)

    Martin Peter Christiansen

    2017-11-01

    Full Text Available A Light Detection and Ranging (LiDAR sensor mounted on an Unmanned Aerial Vehicle (UAV can map the overflown environment in point clouds. Mapped canopy heights allow for the estimation of crop biomass in agriculture. The work presented in this paper contributes to sensory UAV setup design for mapping and textual analysis of agricultural fields. LiDAR data are combined with data from Global Navigation Satellite System (GNSS and Inertial Measurement Unit (IMU sensors to conduct environment mapping for point clouds. The proposed method facilitates LiDAR recordings in an experimental winter wheat field. Crop height estimates ranging from 0.35–0.58 m are correlated to the applied nitrogen treatments of 0–300 kg N ha . The LiDAR point clouds are recorded, mapped, and analysed using the functionalities of the Robot Operating System (ROS and the Point Cloud Library (PCL. Crop volume estimation is based on a voxel grid with a spatial resolution of 0.04 × 0.04 × 0.001 m. Two different flight patterns are evaluated at an altitude of 6 m to determine the impacts of the mapped LiDAR measurements on crop volume estimations.

  14. Designing and Testing a UAV Mapping System for Agricultural Field Surveying.

    Science.gov (United States)

    Christiansen, Martin Peter; Laursen, Morten Stigaard; Jørgensen, Rasmus Nyholm; Skovsen, Søren; Gislum, René

    2017-11-23

    A Light Detection and Ranging (LiDAR) sensor mounted on an Unmanned Aerial Vehicle (UAV) can map the overflown environment in point clouds. Mapped canopy heights allow for the estimation of crop biomass in agriculture. The work presented in this paper contributes to sensory UAV setup design for mapping and textual analysis of agricultural fields. LiDAR data are combined with data from Global Navigation Satellite System (GNSS) and Inertial Measurement Unit (IMU) sensors to conduct environment mapping for point clouds. The proposed method facilitates LiDAR recordings in an experimental winter wheat field. Crop height estimates ranging from 0.35-0.58 m are correlated to the applied nitrogen treatments of 0-300 kg N ha . The LiDAR point clouds are recorded, mapped, and analysed using the functionalities of the Robot Operating System (ROS) and the Point Cloud Library (PCL). Crop volume estimation is based on a voxel grid with a spatial resolution of 0.04 × 0.04 × 0.001 m. Two different flight patterns are evaluated at an altitude of 6 m to determine the impacts of the mapped LiDAR measurements on crop volume estimations.

  15. St. John Benthic Habitat Mapping - Moderate Depth Ground Validation Sites (Mean Locations)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Benthic habitats of the moderate-depth marine environment in and around the Virgin Islands Coral Reef National Monument were mapped using a combination of...

  16. Content layer progressive coding of digital maps

    DEFF Research Database (Denmark)

    Forchhammer, Søren; Jensen, Ole Riis

    2000-01-01

    A new lossless context based method is presented for content progressive coding of limited bits/pixel images, such as maps, company logos, etc., common on the WWW. Progressive encoding is achieved by separating the image into content layers based on other predefined information. Information from...... already coded layers are used when coding subsequent layers. This approach is combined with efficient template based context bi-level coding, context collapsing methods for multi-level images and arithmetic coding. Relative pixel patterns are used to collapse contexts. The number of contexts are analyzed....... The new methods outperform existing coding schemes coding digital maps and in addition provide progressive coding. Compared to the state-of-the-art PWC coder, the compressed size is reduced to 60-70% on our layered test images....

  17. The role of causal maps in intellectual capital measurement and management

    DEFF Research Database (Denmark)

    Montemari, Marco; Nielsen, Christian

    2013-01-01

    Purpose – The purpose of this paper is to investigate the measurement and the management of the dynamic aspects of intellectual capital through the use of causal mapping. Design/methodology/approach – The study details the methods utilized in a single in-depth case study of a network-based business...... of the lag and the persistence of the effects of managerial actions. In addition, it can signal when and how to refine and update the causal map. The combination of these factors supports the dynamic measurement and management of intellectual capital. Research limitations/implications – The paper presented...... the causal mapping approach into practice. Practical implications – The paper highlights the need to build causal maps to enhance the measurement and management of intellectual capital, which is dynamic of nature. As a consequence, this tool can be useful for companies to monitor their intangibles...

  18. Risk-targeted maps for Romania

    Science.gov (United States)

    Vacareanu, Radu; Pavel, Florin; Craciun, Ionut; Coliba, Veronica; Arion, Cristian; Aldea, Alexandru; Neagu, Cristian

    2018-03-01

    Romania has one of the highest seismic hazard levels in Europe. The seismic hazard is due to a combination of local crustal seismic sources, situated mainly in the western part of the country and the Vrancea intermediate-depth seismic source, which can be found at the bend of the Carpathian Mountains. Recent seismic hazard studies have shown that there are consistent differences between the slopes of the seismic hazard curves for sites situated in the fore-arc and back-arc of the Carpathian Mountains. Consequently, in this study we extend this finding to the evaluation of the probability of collapse of buildings and finally to the development of uniform risk-targeted maps. The main advantage of uniform risk approach is that the target probability of collapse will be uniform throughout the country. Finally, the results obtained are discussed in the light of a recent study with the same focus performed at European level using the hazard data from SHARE project. The analyses performed in this study have pointed out to a dominant influence of the quantile of peak ground acceleration used for anchoring the fragility function. This parameter basically alters the shape of the risk-targeted maps shifting the areas which have higher collapse probabilities from eastern Romania to western Romania, as its exceedance probability increases. Consequently, a uniform procedure for deriving risk-targeted maps appears as more than necessary.

  19. Time-efficient, high-resolution, whole brain three-dimensional macromolecular proton fraction mapping.

    Science.gov (United States)

    Yarnykh, Vasily L

    2016-05-01

    Macromolecular proton fraction (MPF) mapping is a quantitative MRI method that reconstructs parametric maps of a relative amount of macromolecular protons causing the magnetization transfer (MT) effect and provides a biomarker of myelination in neural tissues. This study aimed to develop a high-resolution whole brain MPF mapping technique using a minimal number of source images for scan time reduction. The described technique was based on replacement of an actually acquired reference image without MT saturation by a synthetic one reconstructed from R1 and proton density maps, thus requiring only three source images. This approach enabled whole brain three-dimensional MPF mapping with isotropic 1.25 × 1.25 × 1.25 mm(3) voxel size and a scan time of 20 min. The synthetic reference method was validated against standard MPF mapping with acquired reference images based on data from eight healthy subjects. Mean MPF values in segmented white and gray matter appeared in close agreement with no significant bias and small within-subject coefficients of variation (maps demonstrated sharp white-gray matter contrast and clear visualization of anatomical details, including gray matter structures with high iron content. The proposed synthetic reference method improves resolution of MPF mapping and combines accurate MPF measurements with unique neuroanatomical contrast features. © 2015 Wiley Periodicals, Inc.

  20. COMPREHENSIVE EVALUATION AND ANALYSIS OF CHINA’S MAINSTREAM ONLINE MAP SERVICE WEBSITES

    Directory of Open Access Journals (Sweden)

    H. Zhang

    2012-08-01

    Full Text Available With the flourish development of China's Internet market, all kinds of users for map service demand is rising continually, within it contains tremendous commercial interests. Many internet giants have got involved in the field of online map service, and defined it as an important strategic product of the company. The main purpose of this research is to evaluate these online map service websites comprehensively with a model, and analyse the problems according to the evaluation results. Then some corresponding solving measures are proposed, which provides a theoretical and application guidance for the future development of fiercely competitive online map websites. The research consists of three stages: (a the mainstream online map service websites in China are introduced and the present situation of them is analysed through visit, investigation, consultant, analysis and research. (b a whole comprehensive evaluation quota system of online map service websites from the view of functions, layout, interaction design color position and so on, combining with the data indexes such as time efficiency, accuracy, objectivity and authority. (c a comprehensive evaluation to these online map service websites is proceeded based on the fuzzy evaluation mathematical model, and the difficulty that measure the map websites quantitatively is solved.

  1. From the second gradient operator and second class of integral theorems to Gaussian or spherical mapping invariants

    Institute of Scientific and Technical Information of China (English)

    YIN Ya-jun; WU Ji-ye; HUANG Ke-zhi; FAN Qin-shan

    2008-01-01

    By combining of the second gradient operator, the second class of integral theorems, the Gaussian-curvature-based integral theorems and the Gaussian (or spherical) mapping, a series of invariants or geometric conservation quantities under Gaussian (or spherical) mapping are revealed. From these mapping invariants important transformations between original curved surface and the spherical surface are derived. The potential applications of these invariants and transformations to geometry are discussed.

  2. Development of optimized segmentation map in dual energy computed tomography

    Science.gov (United States)

    Yamakawa, Keisuke; Ueki, Hironori

    2012-03-01

    Dual energy computed tomography (DECT) has been widely used in clinical practice and has been particularly effective for tissue diagnosis. In DECT the difference of two attenuation coefficients acquired by two kinds of X-ray energy enables tissue segmentation. One problem in conventional DECT is that the segmentation deteriorates in some cases, such as bone removal. This is due to two reasons. Firstly, the segmentation map is optimized without considering the Xray condition (tube voltage and current). If we consider the tube voltage, it is possible to create an optimized map, but unfortunately we cannot consider the tube current. Secondly, the X-ray condition is not optimized. The condition can be set empirically, but this means that the optimized condition is not used correctly. To solve these problems, we have developed methods for optimizing the map (Method-1) and the condition (Method-2). In Method-1, the map is optimized to minimize segmentation errors. The distribution of the attenuation coefficient is modeled by considering the tube current. In Method-2, the optimized condition is decided to minimize segmentation errors depending on tube voltagecurrent combinations while keeping the total exposure constant. We evaluated the effectiveness of Method-1 by performing a phantom experiment under the fixed condition and of Method-2 by performing a phantom experiment under different combinations calculated from the total exposure constant. When Method-1 was followed with Method-2, the segmentation error was reduced from 37.8 to 13.5 %. These results demonstrate that our developed methods can achieve highly accurate segmentation while keeping the total exposure constant.

  3. Fine-mapping of qGW4.05, a major QTL for kernel weight and size in maize.

    Science.gov (United States)

    Chen, Lin; Li, Yong-xiang; Li, Chunhui; Wu, Xun; Qin, Weiwei; Li, Xin; Jiao, Fuchao; Zhang, Xiaojing; Zhang, Dengfeng; Shi, Yunsu; Song, Yanchun; Li, Yu; Wang, Tianyu

    2016-04-12

    Kernel weight and size are important components of grain yield in cereals. Although some information is available concerning the map positions of quantitative trait loci (QTL) for kernel weight and size in maize, little is known about the molecular mechanisms of these QTLs. qGW4.05 is a major QTL that is associated with kernel weight and size in maize. We combined linkage analysis and association mapping to fine-map and identify candidate gene(s) at qGW4.05. QTL qGW4.05 was fine-mapped to a 279.6-kb interval in a segregating population derived from a cross of Huangzaosi with LV28. By combining the results of regional association mapping and linkage analysis, we identified GRMZM2G039934 as a candidate gene responsible for qGW4.05. Candidate gene-based association mapping was conducted using a panel of 184 inbred lines with variable kernel weights and kernel sizes. Six polymorphic sites in the gene GRMZM2G039934 were significantly associated with kernel weight and kernel size. The results of linkage analysis and association mapping revealed that GRMZM2G039934 is the most likely candidate gene for qGW4.05. These results will improve our understanding of the genetic architecture and molecular mechanisms underlying kernel development in maize.

  4. Generating Clustered Journal Maps : An Automated System for Hierarchical Classification

    NARCIS (Netherlands)

    Leydesdorff, L.; Bornmann, L.; Wagner, C.S.

    2017-01-01

    Journal maps and classifications for 11,359 journals listed in the combined Journal Citation Reports 2015 of the Science and Social Sciences Citation Indexes are provided at https://leydesdorff.github.io/journals/ and http://www.leydesdorff.net/jcr15. A routine using VOSviewer for integrating the

  5. An Atlas of ShakeMaps and population exposure catalog for earthquake loss modeling

    Science.gov (United States)

    Allen, T.I.; Wald, D.J.; Earle, P.S.; Marano, K.D.; Hotovec, A.J.; Lin, K.; Hearne, M.G.

    2009-01-01

    We present an Atlas of ShakeMaps and a catalog of human population exposures to moderate-to-strong ground shaking (EXPO-CAT) for recent historical earthquakes (1973-2007). The common purpose of the Atlas and exposure catalog is to calibrate earthquake loss models to be used in the US Geological Survey's Prompt Assessment of Global Earthquakes for Response (PAGER). The full ShakeMap Atlas currently comprises over 5,600 earthquakes from January 1973 through December 2007, with almost 500 of these maps constrained-to varying degrees-by instrumental ground motions, macroseismic intensity data, community internet intensity observations, and published earthquake rupture models. The catalog of human exposures is derived using current PAGER methodologies. Exposure to discrete levels of shaking intensity is obtained by correlating Atlas ShakeMaps with a global population database. Combining this population exposure dataset with historical earthquake loss data, such as PAGER-CAT, provides a useful resource for calibrating loss methodologies against a systematically-derived set of ShakeMap hazard outputs. We illustrate two example uses for EXPO-CAT; (1) simple objective ranking of country vulnerability to earthquakes, and; (2) the influence of time-of-day on earthquake mortality. In general, we observe that countries in similar geographic regions with similar construction practices tend to cluster spatially in terms of relative vulnerability. We also find little quantitative evidence to suggest that time-of-day is a significant factor in earthquake mortality. Moreover, earthquake mortality appears to be more systematically linked to the population exposed to severe ground shaking (Modified Mercalli Intensity VIII+). Finally, equipped with the full Atlas of ShakeMaps, we merge each of these maps and find the maximum estimated peak ground acceleration at any grid point in the world for the past 35 years. We subsequently compare this "composite ShakeMap" with existing global

  6. Preliminary Evaluation of MapReduce for High-Performance Climate Data Analysis

    Science.gov (United States)

    Duffy, Daniel Q.; Schnase, John L.; Thompson, John H.; Freeman, Shawn M.; Clune, Thomas L.

    2012-01-01

    MapReduce is an approach to high-performance analytics that may be useful to data intensive problems in climate research. It offers an analysis paradigm that uses clusters of computers and combines distributed storage of large data sets with parallel computation. We are particularly interested in the potential of MapReduce to speed up basic operations common to a wide range of analyses. In order to evaluate this potential, we are prototyping a series of canonical MapReduce operations over a test suite of observational and climate simulation datasets. Our initial focus has been on averaging operations over arbitrary spatial and temporal extents within Modern Era Retrospective- Analysis for Research and Applications (MERRA) data. Preliminary results suggest this approach can improve efficiencies within data intensive analytic workflows.

  7. Corrosion mapping in pipelines

    International Nuclear Information System (INIS)

    Zscherpel, U.; Alekseychuk, O.; Bellon, C.; Ewert, U.; Rost, P.; Schmid, M.

    2002-01-01

    In a joint research project, BASF AG and BAM analyzed the state of the art of tangential radiography of pipes and developed more efficient methods of evaluation. Various PC applications were developed and tested: 1. A program for routine evaluation of digital radiographic images. 2. 3D simulation of the tangential projection of pipes for common radiation sources and various different detectors. 3. Preliminary work on combined evaluation of digital projections and wall thickness changes in radiation direction resulted in a new manner of image display, i.e. the so-called 'corrosion mapping', in which the wall thickness is displayed as a 2D picture above the pipe surface [de

  8. Comparison of Fourier transform and continuous wavelet transform to study echo-planar imaging flow maps

    Energy Technology Data Exchange (ETDEWEB)

    Rodriguez G, A.; Bowtell, R.; Mansfield, P. [Area de Procesamiento Digital de Senales e Imagenes Biomedicas. Universidad Autonoma Metropolitana Iztapalapa. Mexico D.F. 09340 Mexico (Mexico)

    1998-12-31

    Velocity maps were studied combining Doyle and Mansfield method (1986) with each of the following transforms: Fourier, window Fourier and wavelet (Mexican hat). Continuous wavelet transform was compared against the two Fourier transform to determine which technique is best suited to study blood maps generated by Half Fourier Echo-Planar Imaging. Coefficient images were calculated and plots of the pixel intensity variation are presented. Finally, contour maps are shown to visualize the behavior of the blood flow in the cardiac chambers for the wavelet technique. (Author)

  9. Comparison of Fourier transform and continuous wavelet transform to study echo-planar imaging flow maps

    International Nuclear Information System (INIS)

    Rodriguez G, A.; Bowtell, R.; Mansfield, P.

    1998-01-01

    Velocity maps were studied combining Doyle and Mansfield method (1986) with each of the following transforms: Fourier, window Fourier and wavelet (Mexican hat). Continuous wavelet transform was compared against the two Fourier transform to determine which technique is best suited to study blood maps generated by Half Fourier Echo-Planar Imaging. Coefficient images were calculated and plots of the pixel intensity variation are presented. Finally, contour maps are shown to visualize the behavior of the blood flow in the cardiac chambers for the wavelet technique. (Author)

  10. The effects of 137Cs irradiation and MAP on the survival and growth of salmonella Spp in pork

    International Nuclear Information System (INIS)

    Gao Meixu

    2000-01-01

    The effects of 137 Cs irradiation (0 to 2 kGy) and MAP combination treatment on the survival and growth of Salmonella Spp are studied in sterile pork in the absence of competing microflora. A central composite response-surface design is used to test the response of the pathogen to the treatments in a single experiment. Predictive equations are developed from the analyses of variances of the resulting data. The results show that the survival of Salmonella is significant decrease with the increasing of irradiation dose, but there are no evident effects on the survival of salmonella due to the MAP. Five kinds of MAP do not show the difference on the growth of Salmonella. 50% CO 2 treatment shows the irradiation protection of Salmonella compared with air. The results indicate that the treatment combined irradiation with MAP is not more effective for controlling the survival and growth of Salmonella Spp

  11. Vascular map combined with CT colonography for evaluating candidates for laparoscopic colorectal surgery

    International Nuclear Information System (INIS)

    Flor, Nicola; Ceretti, Andrea Pisani; Maroni, Nirvana; Opocher, Enrico; Cornalba, Gianpaolo; Campari, Alessandro; Ravelli, Anna; Lombardi, Maria Antonietta

    2015-01-01

    Contrast-enhanced computed tomography colonography (CE-CTC) is a useful guide for the laparoscopic surgeon to avoid incorrectly removing the colonic segment and the failure to diagnose of synchronous colonic and extra-colonic lesions. Lymph node dissection and vessel ligation under a laparoscopic approach can be time-consuming and can damage vessels and organs. Moreover, mesenteric vessels have extreme variations in terms of their courses and numbers. We describe the benefit of using an abdominal vascular map created by CE-CTC in laparoscopic colorectal surgery candidates. We describe patients with different diseases (colorectal cancer, diverticular disease, and inflammatory bowel disease) who underwent CE-CTC just prior to laparoscopic surgery

  12. Vascular map combined with CT colonography for evaluating candidates for laparoscopic colorectal surgery

    Energy Technology Data Exchange (ETDEWEB)

    Flor, Nicola; Ceretti, Andrea Pisani; Maroni, Nirvana; Opocher, Enrico; Cornalba, Gianpaolo [Azienda Ospedaliera San Paolo, Milan (Italy); Campari, Alessandro; Ravelli, Anna; Lombardi, Maria Antonietta [University degli Studi di Milano, Milan (Italy)

    2015-08-15

    Contrast-enhanced computed tomography colonography (CE-CTC) is a useful guide for the laparoscopic surgeon to avoid incorrectly removing the colonic segment and the failure to diagnose of synchronous colonic and extra-colonic lesions. Lymph node dissection and vessel ligation under a laparoscopic approach can be time-consuming and can damage vessels and organs. Moreover, mesenteric vessels have extreme variations in terms of their courses and numbers. We describe the benefit of using an abdominal vascular map created by CE-CTC in laparoscopic colorectal surgery candidates. We describe patients with different diseases (colorectal cancer, diverticular disease, and inflammatory bowel disease) who underwent CE-CTC just prior to laparoscopic surgery.

  13. Visualization of Disciplinary Profiles: Enhanced Science Overlay Maps

    Directory of Open Access Journals (Sweden)

    Stephen Carley

    2017-08-01

    Full Text Available Purpose: The purpose of this study is to modernize previous work on science overlay maps by updating the underlying citation matrix, generating new clusters of scientific disciplines, enhancing visualizations, and providing more accessible means for analysts to generate their own maps. Design/methodology/approach: We use the combined set of 2015 Journal Citation Reports for the Science Citation Index (n of journals = 8,778 and the Social Sciences Citation Index (n = 3,212 for a total of 11,365 journals. The set of Web of Science Categories in the Science Citation Index and the Social Sciences Citation Index increased from 224 in 2010 to 227 in 2015. Using dedicated software, a matrix of 227 × 227 cells is generated on the basis of whole-number citation counting. We normalize this matrix using the cosine function. We first develop the citing-side, cosine-normalized map using 2015 data and VOSviewer visualization with default parameter values. A routine for making overlays on the basis of the map (“wc15.exe” is available at http://www.leydesdorff.net/wc15/index.htm. Findings: Findings appear in the form of visuals throughout the manuscript. In Figures 1–9 we provide basemaps of science and science overlay maps for a number of companies, universities, and technologies. Research limitations: As Web of Science Categories change and/or are updated so is the need to update the routine we provide. Also, to apply the routine we provide users need access to the Web of Science. Practical implications: Visualization of science overlay maps is now more accurate and true to the 2015 Journal Citation Reports than was the case with the previous version of the routine advanced in our paper. Originality/value: The routine we advance allows users to visualize science overlay maps in VOSviewer using data from more recent Journal Citation Reports.

  14. Nielsen number of a covering map

    Directory of Open Access Journals (Sweden)

    Jerzy Jezierski

    2006-02-01

    Full Text Available We consider a finite regular covering pH:X˜H→X over a compact polyhedron and a map f:X→X admitting a lift f˜:X˜H→X˜H. We show some formulae expressing the Nielsen number N(f as a linear combination of the Nielsen numbers of its lifts.

  15. Introduction: Hazard mapping

    Science.gov (United States)

    Baum, Rex L.; Miyagi, Toyohiko; Lee, Saro; Trofymchuk, Oleksandr M

    2014-01-01

    Twenty papers were accepted into the session on landslide hazard mapping for oral presentation. The papers presented susceptibility and hazard analysis based on approaches ranging from field-based assessments to statistically based models to assessments that combined hydromechanical and probabilistic components. Many of the studies have taken advantage of increasing availability of remotely sensed data and nearly all relied on Geographic Information Systems to organize and analyze spatial data. The studies used a range of methods for assessing performance and validating hazard and susceptibility models. A few of the studies presented in this session also included some element of landslide risk assessment. This collection of papers clearly demonstrates that a wide range of approaches can lead to useful assessments of landslide susceptibility and hazard.

  16. Publishing Platform for Aerial Orthophoto Maps, the Complete Stack

    Science.gov (United States)

    Čepický, J.; Čapek, L.

    2016-06-01

    When creating set of orthophoto maps from mosaic compositions, using airborne systems, such as popular drones, we need to publish results of the work to users. Several steps need to be performed in order get large scale raster data published. As first step, data have to be shared as service (OGC WMS as view service, OGC WCS as download service). But for some applications, OGC WMTS is handy as well, for faster view of the data. Finally the data have to become a part of web mapping application, so that they can be used and evaluated by non-technical users. In this talk, we would like to present automated line of those steps, where user puts in orthophoto image and as a result, OGC Open Web Services are published as well as web mapping application with the data. The web mapping application can be used as standard presentation platform for such type of big raster data to generic user. The publishing platform - Geosense online map information system - can be also used for combination of data from various resources and for creating of unique map compositions and as input for better interpretations of photographed phenomenons. The whole process is successfully tested with eBee drone with raster data resolution 1.5-4 cm/px on many areas and result is also used for creation of derived datasets, usually suited for property management - the records of roads, pavements, traffic signs, public lighting, sewage system, grave locations, and others.

  17. Mapping of Natural Radionuclides using Noise Adjusted Singular Value Decomposition, NASVD

    DEFF Research Database (Denmark)

    Aage, Helle Karina

    2006-01-01

    Mapping of natural radionuclides from airborne gamma spectrometry suffer from random ”noise” in the spectra due to short measurement times. This is partly compensated for by using large volume detectors to improve the counting statistics. One method of further improving the quality of the measured...... spectra is to remove from the spectra a large fraction of this random noise using a special variant of Singular Value Decomposition: Noise Adjusted Singular Value Decomposition. In 1997-1999 the natural radionuclides on the Danish Island of Bornholm were mapped using a combination of the standard 3...

  18. Mapping mesoscale variability of the Azores Current using TOPEX/POSEIDON and ERS 1 altimetry, together with hydrographic and Lagrangian measurements

    Science.gov (United States)

    Hernandez, Fabrice; Le Traon, Pierre-Yves; Morrow, Rosemary

    1995-12-01

    The SEMAPHORE mesoscale air/sea experiment was conducted in the Azores-Madeira region from July to November 1993. TOPEX/POSEIDON (T/P) and ERS 1 were flying simultaneously at that time. The main purposes of this paper are to evaluate the estimation of the oceanic mesoscale circulation from the two different sets of altimetric data (T/P and ERS 1) and to compare the results with in situ measurements provided by the SEMAPHORE hydrographic surveys and surface drifters (three expendable bathytermograph conductivity-temperature-depth surveys in a 500-km2 box and a set of 47 Lagrangian surface drifters drogued at 150 m). Comparisons are carried out through the maps obtained by objective analysis from the four data sets. The mapping accuracy of T/P, ERS 1, T/P and ERS 1 combined, and in situ data is investigated, as well as the sensitivity of the mapping to the correlation functions used. There is a good qualitative agreement between altimetric maps and corresponding drifter and hydrographic maps for the three hydrographic surveys. Correlations are about 0.8, and the regression fit is about 0.6-0.7; the lower values are due to the smooth climatology used to reference the altimetric maps. The correlation for time differences is better, with regression lines not significantly different from 1, especially when ERS 1 and T/P are combined. T/P mapping is almost as good as ERS 1 mapping, which was rather unexpected since the ERS 1 space-time sampling is better suited for the mesoscale. This may reflect the fact that the signal mapped by the hydrography and drifters does not contain the high frequency/wavenumber components. T/P and ERS 1 combined provide better results, although the improvement is not as large as expected, probably for the same reason.

  19. Combining disparate data sources for improved poverty prediction and mapping.

    Science.gov (United States)

    Pokhriyal, Neeti; Jacques, Damien Christophe

    2017-11-14

    More than 330 million people are still living in extreme poverty in Africa. Timely, accurate, and spatially fine-grained baseline data are essential to determining policy in favor of reducing poverty. The potential of "Big Data" to estimate socioeconomic factors in Africa has been proven. However, most current studies are limited to using a single data source. We propose a computational framework to accurately predict the Global Multidimensional Poverty Index (MPI) at a finest spatial granularity and coverage of 552 communes in Senegal using environmental data (related to food security, economic activity, and accessibility to facilities) and call data records (capturing individualistic, spatial, and temporal aspects of people). Our framework is based on Gaussian Process regression, a Bayesian learning technique, providing uncertainty associated with predictions. We perform model selection using elastic net regularization to prevent overfitting. Our results empirically prove the superior accuracy when using disparate data (Pearson correlation of 0.91). Our approach is used to accurately predict important dimensions of poverty: health, education, and standard of living (Pearson correlation of 0.84-0.86). All predictions are validated using deprivations calculated from census. Our approach can be used to generate poverty maps frequently, and its diagnostic nature is, likely, to assist policy makers in designing better interventions for poverty eradication. Copyright © 2017 the Author(s). Published by PNAS.

  20. IDAS, software support for mathematical models and map-based graphics

    International Nuclear Information System (INIS)

    Birnbaum, M.D.; Wecker, D.B.

    1984-01-01

    IDAS (Intermediate Dose Assessment System) was developed for the U.S. Nuclear Regulatory Commission as a hardware/software host for radiological models and display of map-based plume graphics at the Operations Center (HQ), regional incident response centers, and site emergency facilities. IDAS design goals acknowledged the likelihood of future changes in the suite of models and the composition of map features for analysis and graphical display. IDAS provides a generalized software support environment to programmers and users of modeling programs. A database manager process provides multi-user access control to all input and output data for modeling programs. A programmer-created data description file (schema) specifies data field names, data types, legal and recommended ranges, default values, preferred units of measurement, and ''help'' text. Subroutine calls to IDAS from a model program invoke a consistent user interface which can show any of the schema contents, convert units of measurement, and route data to multiple logical devices, including the database. A stand-alone data editor allows the user to read and write model data records without execution of a model. IDAS stores digitized map features in a 4-level naming hierarchy. A user can select the map icon, color, and whether to show a stored name tag, for each map feature. The user also selects image scale (zoom) within limits set by map digitization. The resulting image combines static map information, computed analytic modeling results, and the user's feature selections for display to decision-makers

  1. Cowichan Valley energy mapping and modelling. Report 2 - Energy consumption and density mapping. Final report. [Vancouver Island, Canada

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    2012-06-15

    The driving force behind the Integrated Energy Mapping and Analysis project was the identification and analysis of a suite of pathways that the Cowichan Valley Regional District (CVRD) can utilise to increase its energy resilience, as well as reduce energy consumption and GHG emissions, with a primary focus on the residential sector. Mapping and analysis undertaken will support provincial energy and GHG reduction targets, and the suite of pathways outlined will address a CVRD internal target that calls for 75% of the region's energy within the residential sector to come from locally sourced renewables by 2050. The target has been developed as a mechanism to meet resilience and climate action target. The maps and findings produced are to be integrated as part of a regional policy framework currently under development. The second task in the overall project was the mapping of regional energy consumption density. Combined with the findings from task one, this enables comparison of energy consumption density per area unit with the renewable energy resource availability. In addition, it provides an energy baseline against which future energy planning activities can be evaluated. The mapping of the energy consumption density was divided into categories to correspond with local British Columbia Assessment Authority (BCAA) reporting. The residential sub-categories were comprised of single family detached dwellings, single family attached dwellings, apartments, and moveable dwellings. For commercial and industrial end-users the 14 sub-categories are also in line with BCAA as well as the on-going provincial TaNDM project of which the CVRD is a partner. The results of task two are documented in this report. (LN)

  2. Combining neural networks for protein secondary structure prediction

    DEFF Research Database (Denmark)

    Riis, Søren Kamaric

    1995-01-01

    In this paper structured neural networks are applied to the problem of predicting the secondary structure of proteins. A hierarchical approach is used where specialized neural networks are designed for each structural class and then combined using another neural network. The submodels are designed...... by using a priori knowledge of the mapping between protein building blocks and the secondary structure and by using weight sharing. Since none of the individual networks have more than 600 adjustable weights over-fitting is avoided. When ensembles of specialized experts are combined the performance...

  3. Mapping sediment–landform assemblages to constrain lacustrine sedimentation in a glacier-fed lake catchment in northwest Spitsbergen

    OpenAIRE

    Bilt, Willem van der; Balascio, Nicholas L.; Bakke, Jostein

    2015-01-01

    Changes in the deposition of fine-grained rock-flour in glacier-fed lakes reflect glacier variability. This meltwater-driven signal is, however, often overprinted by other processes. To constrain the signature of lacustrine sedimentation, we mapped the catchment of glacier-fed Lake Hajeren in northwest Spitsbergen, identifying sediment sources and linking them to surface processes. To this end, we employed a combined approach of aerial image interpretation and field mapping. Our map comprises...

  4. Global Geological Map of Venus

    Science.gov (United States)

    Ivanov, M. A.

    2008-09-01

    bias [35], appear to affect the statistics of the smaller craters on Venus. For the larger craters, these factors appear to be less important and craters >8 km were used to estimate the crater density on mapped units. The shape and size of occurrences of units may also affect the crater statistics on Venus where the total number of craters is small. To minimize influence of this factor the crater density on large and contiguous units that have quasiequidimensional occurrences was estimated. Sometimes, the small total number of craters on Venus impels to combine some units into one in order to increase the crater statistics. The generally similar nature of the heavily tectonized units (t, pdl, pr, gb) and their consistent relationships with the vast plains units permit to combine them into one, the tectonized terrains unit. Both units of regional plains were also combined. Thus, craters were counted on five units: tt (tectonized terrains: t+pdl+pr+gb), psh, rp (rp1+rp2), pl, and rt that make up ~95.8% of the map area. The mean densities (craters per 106km2) of craters on these units are as follow: tt 1.70 (±0.27, two σ); psh: 1.62 (±0.28); rp: 1.63 (±0.18); pl: 0.84 (±0.29); rt: 0.98 (±0.40). The mean density of craters (>8 km) in the map area (all units) is 1.56. If the mean crater density corresponds to the mean surface age, T [19], then the ages of the above units as fractions of T are: tt: 1.09 (±0.17, two σ) T, psh: 1.04 (±0.18) T, rp: 1.05 (±0.12) T, pl: 0.54 (±0.19) T, rt: 0.63 (±0.26) T. These results are consistent with the observed stratigraphic relationships and suggest that the visible stratigraphic record consists of two periods: Fortunian, which includes units from tessera to regional plains (densely clustered around 1.06 T) and Atlian, during which smooth and lobate plains and rift zones were emplaced. These units formed during significantly longer time interval from ~1 T and perhaps to the present. The exposed (minimal) area of the Fortunian

  5. Combination of Landsat and Sentinel-2 MSI data for initial assessing of burn severity

    Science.gov (United States)

    Quintano, C.; Fernández-Manso, A.; Fernández-Manso, O.

    2018-02-01

    Nowadays Earth observation satellites, in particular Landsat, provide a valuable help to forest managers in post-fire operations; being the base of post-fire damage maps that enable to analyze fire impacts and to develop vegetation recovery plans. Sentinel-2A MultiSpectral Instrument (MSI) records data in similar spectral wavelengths that Landsat 8 Operational Land Imager (OLI), and has higher spatial and temporal resolutions. This work compares two types of satellite-based maps for evaluating fire damage in a large wildfire (around 8000 ha) located in Sierra de Gata (central-western Spain) on 6-11 August 2015. 1) burn severity maps based exclusively on Landsat data; specifically, on differenced Normalized Burn Ratio (dNBR) and on its relative versions (Relative dNBR, RdNBR, and Relativized Burn Ratio, RBR) and 2) burn severity maps based on the same indexes but combining pre-fire data from Landsat 8 OLI with post-fire data from Sentinel-2A MSI data. Combination of both Landsat and Sentinel-2 data might reduce the time elapsed since forest fire to the availability of an initial fire damage map. Interpretation of ortho-photograph Pléiades 1 B data (1:10,000) provided us the ground reference data to measure the accuracy of both burn severity maps. Results showed that Landsat based burn severity maps presented an adequate assessment of the damage grade (κ statistic = 0.80) and its spatial distribution in wildfire emergency response. Further using both Landsat and Sentinel-2 MSI data the accuracy of burn severity maps, though slightly lower (κ statistic = 0.70) showed an adequate level for be used by forest managers.

  6. An integrated pan-tropical biomass map using multiple reference datasets

    NARCIS (Netherlands)

    Avitabile, V.; Herold, M.; Heuvelink, G.B.M.; Lewis, S.L.; Phillips, O.L.; Asner, G.P.; Armston, J.; Asthon, P.; Banin, L.F.; Bayol, N.; Berry, N.; Boeckx, P.; Jong, De B.; Devries, B.; Girardin, C.; Kearsley, E.; Lindsell, J.A.; Lopez-gonzalez, G.; Lucas, R.; Malhi, Y.; Morel, A.; Mitchard, E.; Nagy, L.; Qie, L.; Quinones, M.; Ryan, C.M.; Slik, F.; Sunderland, T.; Vaglio Laurin, G.; Valentini, R.; Verbeeck, H.; Wijaya, A.; Willcock, S.

    2016-01-01

    We combined two existing datasets of vegetation aboveground biomass (AGB) (Proceedings of the National Academy of Sciences of the United States of America, 108, 2011, 9899; Nature Climate Change, 2, 2012, 182) into a pan-tropical AGB map at 1-km resolution using an independent reference dataset of

  7. High resolution digital soil mapping as a future instrument for developing sustainable landuse strategies

    Science.gov (United States)

    Gries, Philipp; Funke, Lisa-Marie; Baumann, Frank; Schmidt, Karsten; Behrens, Thorsten; Scholten, Thomas

    2016-04-01

    Climate change, increase in population and intensification of land use pose a great challenge for sustainable handling of soils. Intelligent landuse systems are able to minimize and/or avoid soil erosion and loss of soil fertility. A successful application of such systems requires area-wide soil information with high resolution. Containing three consecutive steps, the project INE-2-H („innovative sustainable landuse") at the University of Tuebingen is about creating high-resolution soil information using Digital Soil Mapping (DSM) techniques to develop sustainable landuse strategies. Input data includes soil data from fieldwork (texture and carbon content), the official digital soil and geological map (1:50.000) as well as a wide selection of local, complex and combined terrain parameters. First, soil maps have been created using the DSM approach and Random Forest (RF). Due to high resolution (10x10 m pixels), those maps show a more detailed spatial variability of soil information compared to the official maps used. Root mean square errors (RMSE) of the modelled maps vary from 2.11 % to 6.87 % and the coefficients of determination (R²) go from 0.42 to 0.68. Second, soil erosion potentials have been estimated according to the Universal Soil Loss Equation (USLE). Long-term average annual soil loss ranges from 0.56 to 24.23 [t/ha/a]. Third, combining high-resolution erosion potentials with expert-knowledge of local farmers will result in a landuse system adapted to local conditions. This system will include sustainable strategies reducing soil erosion and conserving soil fertility.

  8. Construction of Improved Maps of Mercury's Crustal Magnetic Field at Northern Midlatitudes

    Science.gov (United States)

    Hood, L. L.; Oliveira, J. S.

    2017-12-01

    We report progress toward the construction of a refined version of the northern midlatitude crustal magnetic field map of Hood [GRL, 2016], extended to cover latitudes from 35N to 80N and all longitudes. The main improvements include: (1) Combining MESSENGER magnetometer data from August and September of 2014 with that from February, March, and April of 2015 to provide the best overall input data set for mapping and the largest possible area of coverage; (2) improving the elimination of external and core field contamination by using a model for Mercury's core field and a more conservative high-pass filter length; and (3) improving the equivalent source dipole (ESD) mapping technique using an equidistant equivalent source dipole array and varying the depth, orientation, and resolution of the array to minimize the overall root mean square misfit. Combining data from the two time intervals allows the total latitude range of the final map to be increased by at least 5 degrees to 35N - 80N. Also, previous mapping has concentrated on the hemisphere from 90E to 270E; inclusion of all available data will allow the final maps to be extended to all longitudes, more than doubling the coverage reported by Hood [2016]. Previous work has demonstrated a concentration of relatively strong magnetic anomalies near and within the Caloris impact basin. A secondary concentration near Sobkou Planitia, which contains an older impact basin, was also found. The existence of anomalies within the Caloris rim implies that a steady magnetizing field, i.e., a core dynamo, was present when this basin formed. A major application of the improved map will be to investigate whether anomalies are concentrated near and within other impact basins. If some basins are found not to have concentrations of magnetic anomalies, this could imply a role of impactor composition (e.g., iron content) in producing the crustal materials that are most strongly magnetized, as has previously been proposed to be the

  9. Prediction of Poly(A Sites by Poly(A Read Mapping.

    Directory of Open Access Journals (Sweden)

    Thomas Bonfert

    Full Text Available RNA-seq reads containing part of the poly(A tail of transcripts (denoted as poly(A reads provide the most direct evidence for the position of poly(A sites in the genome. However, due to reduced coverage of poly(A tails by reads, poly(A reads are not routinely identified during RNA-seq mapping. Nevertheless, recent studies for several herpesviruses successfully employed mapping of poly(A reads to identify herpesvirus poly(A sites using different strategies and customized programs. To more easily allow such analyses without requiring additional programs, we integrated poly(A read mapping and prediction of poly(A sites into our RNA-seq mapping program ContextMap 2. The implemented approach essentially generalizes previously used poly(A read mapping approaches and combines them with the context-based approach of ContextMap 2 to take into account information provided by other reads aligned to the same location. Poly(A read mapping using ContextMap 2 was evaluated on real-life data from the ENCODE project and compared against a competing approach based on transcriptome assembly (KLEAT. This showed high positive predictive value for our approach, evidenced also by the presence of poly(A signals, and considerably lower runtime than KLEAT. Although sensitivity is low for both methods, we show that this is in part due to a high extent of spurious results in the gold standard set derived from RNA-PET data. Sensitivity improves for poly(A sites of known transcripts or determined with a more specific poly(A sequencing protocol and increases with read coverage on transcript ends. Finally, we illustrate the usefulness of the approach in a high read coverage scenario by a re-analysis of published data for herpes simplex virus 1. Thus, with current trends towards increasing sequencing depth and read length, poly(A read mapping will prove to be increasingly useful and can now be performed automatically during RNA-seq mapping with ContextMap 2.

  10. Expanding Thurston maps

    CERN Document Server

    Bonk, Mario

    2017-01-01

    This monograph is devoted to the study of the dynamics of expanding Thurston maps under iteration. A Thurston map is a branched covering map on a two-dimensional topological sphere such that each critical point of the map has a finite orbit under iteration. It is called expanding if, roughly speaking, preimages of a fine open cover of the underlying sphere under iterates of the map become finer and finer as the order of the iterate increases. Every expanding Thurston map gives rise to a fractal space, called its visual sphere. Many dynamical properties of the map are encoded in the geometry of this visual sphere. For example, an expanding Thurston map is topologically conjugate to a rational map if and only if its visual sphere is quasisymmetrically equivalent to the Riemann sphere. This relation between dynamics and fractal geometry is the main focus for the investigations in this work.

  11. Reading the maps: Organization and function of chromatin types in Drosophila

    NARCIS (Netherlands)

    Braunschweig, U.

    2010-01-01

    The work presented in this thesis shows that the Drosophila genome is organized in chromatin domains with many implications for gene regulation, nuclear organization, and evolution. Furthermore it provides examples of how maps of chromatin protein binding, combined with computational approaches, can

  12. METABOLIC MAPPING BY ENZYME HISTOCHEMISTRY IN LIVING ANIMALS, TISSUES AND CELLS

    NARCIS (Netherlands)

    van Noorden, C. J. F.

    2009-01-01

    Imaging of reporter molecules such as fluorescent proteins in intact animals, tissue and cells has become an indispensable tool in cell biology Imaging activity of enzymes, which is called metabolic mapping, provides information on subcellular localisation in combination with function of the enzymes

  13. On palaeogeographic map

    Directory of Open Access Journals (Sweden)

    Zeng-Zhao Feng

    2016-01-01

    Full Text Available The palaeogeographic map is a graphic representation of physical geographical characteristics in geological history periods and human history periods. It is the most important result of palaeogeographic study. The author, as the Editor-in-Chief of Journal of Palaeogeography, Chinese Edition and English Edition, aimed at the problems of the articles submitted to and published in the Journal of Palaeogeography in recent years and the relevant papers and books of others, and integrated with his practice of palaeogeographic study and mapping, wrote this paper. The content mainly includes the data of palaeogeographic mapping, the problems of palaeogeographic mapping method, the “Single factor analysis and multifactor comprehensive mapping method —— Methodology of quantitative lithofacies palaeogeography”, i.e., the “4 steps mapping method”, the nomenclature of each palaeogeographic unit in palaeogeographic map, the explanation of each palaeogeographic unit in palaeogeographic map, the explanation of significance of palaeogeographic map and palaeogeographic article, the evaluative standards of palaeogeographic map and palaeogeographic article, and the self-evaluation. Criticisms and corrections are welcome.

  14. NeatMap--non-clustering heat map alternatives in R.

    Science.gov (United States)

    Rajaram, Satwik; Oono, Yoshi

    2010-01-22

    The clustered heat map is the most popular means of visualizing genomic data. It compactly displays a large amount of data in an intuitive format that facilitates the detection of hidden structures and relations in the data. However, it is hampered by its use of cluster analysis which does not always respect the intrinsic relations in the data, often requiring non-standardized reordering of rows/columns to be performed post-clustering. This sometimes leads to uninformative and/or misleading conclusions. Often it is more informative to use dimension-reduction algorithms (such as Principal Component Analysis and Multi-Dimensional Scaling) which respect the topology inherent in the data. Yet, despite their proven utility in the analysis of biological data, they are not as widely used. This is at least partially due to the lack of user-friendly visualization methods with the visceral impact of the heat map. NeatMap is an R package designed to meet this need. NeatMap offers a variety of novel plots (in 2 and 3 dimensions) to be used in conjunction with these dimension-reduction techniques. Like the heat map, but unlike traditional displays of such results, it allows the entire dataset to be displayed while visualizing relations between elements. It also allows superimposition of cluster analysis results for mutual validation. NeatMap is shown to be more informative than the traditional heat map with the help of two well-known microarray datasets. NeatMap thus preserves many of the strengths of the clustered heat map while addressing some of its deficiencies. It is hoped that NeatMap will spur the adoption of non-clustering dimension-reduction algorithms.

  15. Human Mind Maps

    Science.gov (United States)

    Glass, Tom

    2016-01-01

    When students generate mind maps, or concept maps, the maps are usually on paper, computer screens, or a blackboard. Human Mind Maps require few resources and little preparation. The main requirements are space where students can move around and a little creativity and imagination. Mind maps can be used for a variety of purposes, and Human Mind…

  16. Mapping of Cu and Pb Contaminations in Soil Using Combined Geochemistry, Topography, and Remote Sensing: A Case Study in the Le’an River Floodplain, China

    Directory of Open Access Journals (Sweden)

    Yin Gao

    2012-05-01

    Full Text Available Heavy metal pollution in soil is becoming a widely concerning environmental problem in China. The aim of this study is to integrate multiple sources of data, namely total Cu and Pb contents, digital elevation model (DEM data, remote sensing image and interpreted land-use data, for mapping the spatial distribution of total Cu and Pb contamination in top soil along the Le’an River and its branches. Combined with geographical analyses and watershed delineation, the source and transportation route of pollutants are identified. Regions at high risk of Cu or Pb pollution are suggested. Results reveal that topography is the major factor that controls the spatial distribution of Cu and Pb. Watershed delineation shows evidence that the streamflow resulting from rainfall is the major carrier of metal pollutants.

  17. CrowdMapping: A Crowdsourcing-Based Terminology Mapping Method for Medical Data Standardization.

    Science.gov (United States)

    Mao, Huajian; Chi, Chenyang; Huang, Boyu; Meng, Haibin; Yu, Jinghui; Zhao, Dongsheng

    2017-01-01

    Standardized terminology is the prerequisite of data exchange in analysis of clinical processes. However, data from different electronic health record systems are based on idiosyncratic terminology systems, especially when the data is from different hospitals and healthcare organizations. Terminology standardization is necessary for the medical data analysis. We propose a crowdsourcing-based terminology mapping method, CrowdMapping, to standardize the terminology in medical data. CrowdMapping uses a confidential model to determine how terminologies are mapped to a standard system, like ICD-10. The model uses mappings from different health care organizations and evaluates the diversity of the mapping to determine a more sophisticated mapping rule. Further, the CrowdMapping model enables users to rate the mapping result and interact with the model evaluation. CrowdMapping is a work-in-progress system, we present initial results mapping terminologies.

  18. Areas activated during naturalistic reading comprehension overlap topological visual, auditory, and somatotomotor maps.

    Science.gov (United States)

    Sood, Mariam R; Sereno, Martin I

    2016-08-01

    Cortical mapping techniques using fMRI have been instrumental in identifying the boundaries of topological (neighbor-preserving) maps in early sensory areas. The presence of topological maps beyond early sensory areas raises the possibility that they might play a significant role in other cognitive systems, and that topological mapping might help to delineate areas involved in higher cognitive processes. In this study, we combine surface-based visual, auditory, and somatomotor mapping methods with a naturalistic reading comprehension task in the same group of subjects to provide a qualitative and quantitative assessment of the cortical overlap between sensory-motor maps in all major sensory modalities, and reading processing regions. Our results suggest that cortical activation during naturalistic reading comprehension overlaps more extensively with topological sensory-motor maps than has been heretofore appreciated. Reading activation in regions adjacent to occipital lobe and inferior parietal lobe almost completely overlaps visual maps, whereas a significant portion of frontal activation for reading in dorsolateral and ventral prefrontal cortex overlaps both visual and auditory maps. Even classical language regions in superior temporal cortex are partially overlapped by topological visual and auditory maps. By contrast, the main overlap with somatomotor maps is restricted to a small region on the anterior bank of the central sulcus near the border between the face and hand representations of M-I. Hum Brain Mapp 37:2784-2810, 2016. © 2016 The Authors Human Brain Mapping Published by Wiley Periodicals, Inc. © 2016 The Authors Human Brain Mapping Published by Wiley Periodicals, Inc.

  19. First Paleomagnetic Map of the Easternmost Mediterranean Derived from Combined Geophysical-Geological Analysis

    Science.gov (United States)

    Eppelbaum, Lev; Katz, Youri

    2014-05-01

    magnetization (Ben-Avraham et al., 2002). The results of 3D magnetic field modeling (advanced GSFC program was applied) along three profiles, enabled to detect a boundary between continental and oceanic crust. A reconstruction of the position of a reverse magnetized block of Earth crust enabled to obtain a magnetization zone with a S - N orientation and width reaching 70 km and length - about 200 km. Such a large, thick (about 10 km) zone of inverse magnetization must correspond to the significant and prolonged effect of inverse polarity in the Earth's magnetic field history. We suggest that this is the Kiama zone of inverse polarity that was first detected in the Late Carboniferous and Permian in Australia (Irving, 1966). Subsequent investigations (e.g., Khramov et al., 1974) have shown that the Kiama hyperzone underlies and is covered by zones of alternating polarity; i.e., Donetzk and Illawarra, respectively. According to zircon chronology the Kiama hyperzone extends over a period of 312-265 Ma (Khramov and Iosifidi, 2012), and according to K-Ar, 40Ar/39Ar and various historical planetology methods this period extends of 293-242 Ma (Lapkin and Katz, 1990). Delineation and mapping of the Kiama reverse paleomagnetic zone on the basis of 3D combined modeling of magnetic and gravity fields creates a necessity for attraction of wide spectrum of other geophysical-geological data for substantiation of space-tectonic position of this zone. Practically this is a first real evidence of delineation such an ancient oceanic crust of the Late Paleozoic. On the basis of investigation of Mediterranean ophiolites of the Alpine belt, the most ancient crust of the eastern Mediterranean corresponds to Late Triassic - Jurassic (Robertson et al., 1991). According to the latest paleogeodynamic reconstructions (Stampfli et al., 2013), the Alpine belt is a complex structure and includes structures associated with Neotethys and Paleotethys oceans and with more ancient oceans. It is considered that

  20. Functional materials discovery using energy-structure-function maps.

    Science.gov (United States)

    Pulido, Angeles; Chen, Linjiang; Kaczorowski, Tomasz; Holden, Daniel; Little, Marc A; Chong, Samantha Y; Slater, Benjamin J; McMahon, David P; Bonillo, Baltasar; Stackhouse, Chloe J; Stephenson, Andrew; Kane, Christopher M; Clowes, Rob; Hasell, Tom; Cooper, Andrew I; Day, Graeme M

    2017-03-30

    Molecular crystals cannot be designed in the same manner as macroscopic objects, because they do not assemble according to simple, intuitive rules. Their structures result from the balance of many weak interactions, rather than from the strong and predictable bonding patterns found in metal-organic frameworks and covalent organic frameworks. Hence, design strategies that assume a topology or other structural blueprint will often fail. Here we combine computational crystal structure prediction and property prediction to build energy-structure-function maps that describe the possible structures and properties that are available to a candidate molecule. Using these maps, we identify a highly porous solid, which has the lowest density reported for a molecular crystal so far. Both the structure of the crystal and its physical properties, such as methane storage capacity and guest-molecule selectivity, are predicted using the molecular structure as the only input. More generally, energy-structure-function maps could be used to guide the experimental discovery of materials with any target function that can be calculated from predicted crystal structures, such as electronic structure or mechanical properties.

  1. Programs for visualization, handling and quantification of PIXE maps at the AGLAE facility

    Energy Technology Data Exchange (ETDEWEB)

    Pichon, L., E-mail: laurent.pichon@culture.fr [Centre de recherche et de restauration des musées de France, C2RMF, Palais du Louvre – Porte des Lions, 14 Quai François Mitterrand, 75001 Paris (France); Fédération de recherche NewAGLAE, FR3506 CNRS, Ministère de la Culture et de la Communication, Chimie ParisTech, Palais du Louvre, 75001 Paris (France); Calligaro, T. [Centre de recherche et de restauration des musées de France, C2RMF, Palais du Louvre – Porte des Lions, 14 Quai François Mitterrand, 75001 Paris (France); Fédération de recherche NewAGLAE, FR3506 CNRS, Ministère de la Culture et de la Communication, Chimie ParisTech, Palais du Louvre, 75001 Paris (France); PSL Research University, Chimie ParisTech-CNRS, Institut de Recherche Chimie Paris, UMR8247, 75005 Paris (France); Lemasson, Q.; Moignard, B.; Pacheco, C. [Centre de recherche et de restauration des musées de France, C2RMF, Palais du Louvre – Porte des Lions, 14 Quai François Mitterrand, 75001 Paris (France); Fédération de recherche NewAGLAE, FR3506 CNRS, Ministère de la Culture et de la Communication, Chimie ParisTech, Palais du Louvre, 75001 Paris (France)

    2015-11-15

    The external beam setup of the AGLAE facility has been developed in order to combine PIXE with PIGE, EBS and recently IBIL for the analysis of cultural heritage artefacts. The upgraded external beam end-station integrates five large solid angle X-ray detectors either to reduce the risk of damage on sensitive artworks by decreasing the beam intensity or to routinely acquire elemental maps at various scales. While many programs are available to process PIXE maps acquired with nuclear microprobes, a software to process the major and trace elements PIXE maps point by point using GUPIX is not available. The present paper describes three programs developed for the AGLAE facility to process numerous maps obtained with multiple detectors. AGLAEMAP allows to handle maps and pixel groups within maps, TRAUPIXE to process quantitatively PIXE spectra of all pixels and DATAIMAGING to display the resulting quantitative elemental maps. The benefits of this software suite are demonstrated by processing a dataset acquired on a pellet of geostandard reference material and on a terre mêlée pottery shard sample created by the famous ceramist Bernard Palissy (1510–1589), highlighting chemical elements present in this polychrome ceramic.

  2. Programs for visualization, handling and quantification of PIXE maps at the AGLAE facility

    International Nuclear Information System (INIS)

    Pichon, L.; Calligaro, T.; Lemasson, Q.; Moignard, B.; Pacheco, C.

    2015-01-01

    The external beam setup of the AGLAE facility has been developed in order to combine PIXE with PIGE, EBS and recently IBIL for the analysis of cultural heritage artefacts. The upgraded external beam end-station integrates five large solid angle X-ray detectors either to reduce the risk of damage on sensitive artworks by decreasing the beam intensity or to routinely acquire elemental maps at various scales. While many programs are available to process PIXE maps acquired with nuclear microprobes, a software to process the major and trace elements PIXE maps point by point using GUPIX is not available. The present paper describes three programs developed for the AGLAE facility to process numerous maps obtained with multiple detectors. AGLAEMAP allows to handle maps and pixel groups within maps, TRAUPIXE to process quantitatively PIXE spectra of all pixels and DATAIMAGING to display the resulting quantitative elemental maps. The benefits of this software suite are demonstrated by processing a dataset acquired on a pellet of geostandard reference material and on a terre mêlée pottery shard sample created by the famous ceramist Bernard Palissy (1510–1589), highlighting chemical elements present in this polychrome ceramic.

  3. Wada-test, functional magnetic resonance imaging and direct electrical stimulation - brain mapping methods

    International Nuclear Information System (INIS)

    Minkin, K.; Tanova, R.; Busarski, A.; Penkov, M.; Penev, L.; Hadjidekov, V.

    2009-01-01

    Modern neurosurgery requires accurate preoperative and intraoperative localization of brain pathologies but also of brain functions. The presence of individual variations in healthy subjects and the shift of brain functions in brain diseases provoke the introduction of various methods for brain mapping. The aim of this paper was to analyze the most widespread methods for brain mapping: Wada-test, functional magnetic resonance imaging (fMRI) and intraoperative direct electrical stimulation (DES). This study included 4 patients with preoperative brain mapping using Wada-test and fMRI. Intraoperative mapping with DES during awake craniotomy was performed in one case. The histopathological diagnosis was low-grade glioma in 2 cases, cortical dysplasia (1 patient) and arteriovenous malformation (1 patient). The brain mapping permits total lesion resection in three of four patients. There was no new postoperative deficit despite surgery near or within functional brain areas. Brain plasticity provoking shift of eloquent areas from their usual locations was observed in two cases. The brain mapping methods allow surgery in eloquent brain areas recognized in the past as 'forbidden areas'. Each method has advantages and disadvantages. The precise location of brain functions and pathologies frequently requires combination of different brain mapping methods. (authors)

  4. Land subsidence susceptibility and hazard mapping: the case of Amyntaio Basin, Greece

    Science.gov (United States)

    Tzampoglou, P.; Loupasakis, C.

    2017-09-01

    Landslide susceptibility and hazard mapping has been applying for more than 20 years succeeding the assessment of the landslide risk and the mitigation the phenomena. On the contrary, equivalent maps aiming to study and mitigate land subsidence phenomena caused by the overexploitation of the aquifers are absent from the international literature. The current study focuses at the Amyntaio basin, located in West Macedonia at Florina prefecture. As proved by numerous studies the wider area has been severely affected by the overexploitation of the aquifers, caused by the mining and the agricultural activities. The intensive ground water level drop has triggered extensive land subsidence phenomena, especially at the perimeter of the open pit coal mine operating at the site, causing damages to settlements and infrastructure. The land subsidence susceptibility and risk maps were produced by applying the semi-quantitative WLC (Weighted Linear Combination) method, especially calibrated for this particular catastrophic event. The results were evaluated by using detailed field mapping data referring to the spatial distribution of the surface ruptures caused by the subsidence. The high correlation between the produced maps and the field mapping data, have proved the great value of the maps and of the applied technique on the management and the mitigation of the phenomena. Obviously, these maps can be safely used by decision-making authorities for the future urban safety development.

  5. Quantum image encryption based on generalized affine transform and logistic map

    Science.gov (United States)

    Liang, Hao-Ran; Tao, Xiang-Yang; Zhou, Nan-Run

    2016-07-01

    Quantum circuits of the generalized affine transform are devised based on the novel enhanced quantum representation of digital images. A novel quantum image encryption algorithm combining the generalized affine transform with logistic map is suggested. The gray-level information of the quantum image is encrypted by the XOR operation with a key generator controlled by the logistic map, while the position information of the quantum image is encoded by the generalized affine transform. The encryption keys include the independent control parameters used in the generalized affine transform and the logistic map. Thus, the key space is large enough to frustrate the possible brute-force attack. Numerical simulations and analyses indicate that the proposed algorithm is realizable, robust and has a better performance than its classical counterpart in terms of computational complexity.

  6. Automatic mapping of monitoring data

    DEFF Research Database (Denmark)

    Lophaven, Søren; Nielsen, Hans Bruun; Søndergaard, Jacob

    2005-01-01

    of identifying a release of radioactivity provided that the number of sampling locations is sufficiently high. Consequently, we believe that a combination of applying the presented mapping approach and the physical knowledge of the transport processes of radioactivity should be used to predict the extreme values.......). In the second dataset an accidental release of radioactivity in the environment was simulated in the South-Western corner of the monitored area. The approach has a tendency to smooth the actual data values, and therefore it underestimates extreme values, as seen in the second dataset. However, it is capable...

  7. NeuroMap: A spline-based interactive open-source software for spatiotemporal mapping of 2D and 3D MEA data

    Directory of Open Access Journals (Sweden)

    Oussama eAbdoun

    2011-01-01

    Full Text Available A major characteristic of neural networks is the complexity of their organization at various spatial scales, from microscopic local circuits to macroscopic brain-scale areas. Understanding how neural information is processed thus entails the ability to study them at multiple scales simultaneously. This is made possible using microelectrodes array (MEA technology. Indeed, high-density MEAs provide large-scale covering (several mm² of whole neural structures combined with microscopic resolution (about 50µm of unit activity. Yet, current options for spatiotemporal representation of MEA-collected data remain limited. Here we present NeuroMap, a new interactive Matlab-based software for spatiotemporal mapping of MEA data. NeuroMap uses thin plate spline interpolation, which provides several assets with respect to conventional mapping methods used currently. First, any MEA design can be considered, including 2D or 3D, regular or irregular, arrangements of electrodes. Second, spline interpolation allows the estimation of activity across the tissue with local extrema not necessarily at recording sites. Finally, this interpolation approach provides a straightforward analytical estimation of the spatial Laplacian for better current sources localization. In this software, coregistration of 2D MEA data on the anatomy of the neural tissue is made possible by fine matching of anatomical data with electrode positions using rigid deformation based correction of anatomical pictures. Overall, NeuroMap provides substantial material for detailed spatiotemporal analysis of MEA data. The package is distributed under GNU General Public License (GPL and available at http://sites.google.com/site/neuromapsoftware.

  8. NeuroMap: A Spline-Based Interactive Open-Source Software for Spatiotemporal Mapping of 2D and 3D MEA Data.

    Science.gov (United States)

    Abdoun, Oussama; Joucla, Sébastien; Mazzocco, Claire; Yvert, Blaise

    2011-01-01

    A major characteristic of neural networks is the complexity of their organization at various spatial scales, from microscopic local circuits to macroscopic brain-scale areas. Understanding how neural information is processed thus entails the ability to study them at multiple scales simultaneously. This is made possible using microelectrodes array (MEA) technology. Indeed, high-density MEAs provide large-scale coverage (several square millimeters) of whole neural structures combined with microscopic resolution (about 50 μm) of unit activity. Yet, current options for spatiotemporal representation of MEA-collected data remain limited. Here we present NeuroMap, a new interactive Matlab-based software for spatiotemporal mapping of MEA data. NeuroMap uses thin plate spline interpolation, which provides several assets with respect to conventional mapping methods used currently. First, any MEA design can be considered, including 2D or 3D, regular or irregular, arrangements of electrodes. Second, spline interpolation allows the estimation of activity across the tissue with local extrema not necessarily at recording sites. Finally, this interpolation approach provides a straightforward analytical estimation of the spatial Laplacian for better current sources localization. In this software, coregistration of 2D MEA data on the anatomy of the neural tissue is made possible by fine matching of anatomical data with electrode positions using rigid-deformation-based correction of anatomical pictures. Overall, NeuroMap provides substantial material for detailed spatiotemporal analysis of MEA data. The package is distributed under GNU General Public License and available at http://sites.google.com/site/neuromapsoftware.

  9. Participatory Maps

    DEFF Research Database (Denmark)

    Salovaara-Moring, Inka

    2016-01-01

    practice. In particular, mapping environmental damage, endangered species, and human-made disasters has become one focal point for environmental knowledge production. This type of digital map has been highlighted as a processual turn in critical cartography, whereas in related computational journalism...... of a geo-visualization within information mapping that enhances embodiment in the experience of the information. InfoAmazonia is defined as a digitally created map-space within which journalistic practice can be seen as dynamic, performative interactions between journalists, ecosystems, space, and species...

  10. Digitised Maps in the Danish Map Collection

    OpenAIRE

    Annie Lenschau-Teglers; Vivi Gade Rønsberg

    2005-01-01

    As in the rest of the library world, The Royal Library in Copenhagen is in the process of digitising its collections. At the moment we are mainly working on the handwritten manual catalogue - but digitising the material is also a major working assignment. The Map Collection at The Royal Library has today divided the effort in digitising its materials into 3 groups: 1. Digitised maps as a vital addition to the records in our bibliographic database REX 2. Digitised maps presented as a Digital F...

  11. Smart "geomorphological" map browsing - a tale about geomorphological maps and the internet

    Science.gov (United States)

    Geilhausen, M.; Otto, J.-C.

    2012-04-01

    With the digital production of geomorphological maps, the dissemination of research outputs now extends beyond simple paper products. Internet technologies can contribute to both, the dissemination of geomorphological maps and access to geomorphologic data and help to make geomorphological knowledge available to a greater public. Indeed, many national geological surveys employ end-to-end digital workflows from data capture in the field to final map production and dissemination. This paper deals with the potential of web mapping applications and interactive, portable georeferenced PDF maps for the distribution of geomorphological information. Web mapping applications such as Google Maps have become very popular and widespread and increased the interest and access to mapping. They link the Internet with GIS technology and are a common way of presenting dynamic maps online. The GIS processing is performed online and maps are visualised in interactive web viewers characterised by different capabilities such as zooming, panning or adding further thematic layers, with the map refreshed after each task. Depending on the system architecture and the components used, advanced symbology, map overlays from different applications and sources and their integration into a Desktop GIS are possible. This interoperability is achieved through the use of international open standards that include mechanisms for the integration and visualisation of information from multiple sources. The portable document format (PDF) is commonly used for printing and is a standard format that can be processed by many graphic software and printers without loss of information. A GeoPDF enables the sharing of geospatial maps and data in PDF documents. Multiple, independent map frames with individual spatial reference systems are possible within a GeoPDF, for example, for map overlays or insets. Geospatial functionality of a GeoPDF includes scalable map display, layer visibility control, access to attribute

  12. Combination of statistical and physically based methods to assess shallow slide susceptibility at the basin scale

    Science.gov (United States)

    Oliveira, Sérgio C.; Zêzere, José L.; Lajas, Sara; Melo, Raquel

    2017-07-01

    Approaches used to assess shallow slide susceptibility at the basin scale are conceptually different depending on the use of statistical or physically based methods. The former are based on the assumption that the same causes are more likely to produce the same effects, whereas the latter are based on the comparison between forces which tend to promote movement along the slope and the counteracting forces that are resistant to motion. Within this general framework, this work tests two hypotheses: (i) although conceptually and methodologically distinct, the statistical and deterministic methods generate similar shallow slide susceptibility results regarding the model's predictive capacity and spatial agreement; and (ii) the combination of shallow slide susceptibility maps obtained with statistical and physically based methods, for the same study area, generate a more reliable susceptibility model for shallow slide occurrence. These hypotheses were tested at a small test site (13.9 km2) located north of Lisbon (Portugal), using a statistical method (the information value method, IV) and a physically based method (the infinite slope method, IS). The landslide susceptibility maps produced with the statistical and deterministic methods were combined into a new landslide susceptibility map. The latter was based on a set of integration rules defined by the cross tabulation of the susceptibility classes of both maps and analysis of the corresponding contingency tables. The results demonstrate a higher predictive capacity of the new shallow slide susceptibility map, which combines the independent results obtained with statistical and physically based models. Moreover, the combination of the two models allowed the identification of areas where the results of the information value and the infinite slope methods are contradictory. Thus, these areas were classified as uncertain and deserve additional investigation at a more detailed scale.

  13. Evaluation of Story Maps to Enhance Public Engagement and Communication at Legacy Management Sites – 17334

    Energy Technology Data Exchange (ETDEWEB)

    Castillo, Darina [U.S. Department of Energy, Office of Legacy Management; Carpenter, Cliff [U.S. Department of Energy, Office of Legacy Management; Linard, Joshua [U.S. Department of Energy, Office of Legacy Management; Picel, Mary [Argonne National Lab. (ANL), Argonne, IL (United States)

    2017-03-05

    Story Maps are being used in both public and private sectors to convey information to stakeholders, create enterprise platforms, and assist in decision making. Story Maps are web applications that combine maps, narrative text, images, and multimedia content to provide information. These applications provide a user-friendly platform to share the remarkable history of our sites, the complexity of their contamination and remediation, successes we achieve in our LTS&M activities, and even the challenges we face as we aim to fulfill our mission.

  14. Boundary maps for $C^*$-crossed products with R with an application to the quantum Hall effect

    OpenAIRE

    Kellendonk, Johannes; Schulz-Baldes, Hermann

    2004-01-01

    The boundary map in K-theory arising from the Wiener-Hopf extension of a crossed product algebra with R is the Connes-Thom isomorphism. In this article the Wiener Hopf extension is combined with the Heisenberg group algebra to provide an elementary construction of a corresponding map on higher traces (and cyclic cohomology). It then follows directly from a non-commutative Stokes theorem that this map is dual w.r.t.Connes' pairing of cyclic cohomology with K-theory. As an application, we prove...

  15. An interdisciplinary approach to mapping through scientific cartography, design and artistic expression

    Science.gov (United States)

    Gardener, Joanna; Cartwright, William; Duxbury, Lesley

    2018-05-01

    This paper reports on the initial findings of an interdisciplinary study exploring perceptions of space and place through alternate ways of mapping. The research project aims to bring depth and meaning to places by utilising a combination of diverse influences and responses, including emotional, sensory, memory and imaginary. It investigates mapping from a designer's perspective, with further narration from both the cartographic science and fine art perspectives. It examines the role of design and artistic expression in the cartographic process, and its capacity to effect and transform the appearance, reading and meaning of the final cartographic outcome (Robinson 2010). The crossover between the cartographic sciences and the work of artists who explore space and place enables an interrogation of where these fields collide or alternatively merge, in order to challenge the definition of a map. By exploring cartography through the overlapping of the distinct fields of science and art, this study challenges and questions the tipping point of when a map ceases to be a map and becomes art.

  16. Map Archive Mining: Visual-Analytical Approaches to Explore Large Historical Map Collections

    Directory of Open Access Journals (Sweden)

    Johannes H. Uhl

    2018-04-01

    Full Text Available Historical maps are unique sources of retrospective geographical information. Recently, several map archives containing map series covering large spatial and temporal extents have been systematically scanned and made available to the public. The geographical information contained in such data archives makes it possible to extend geospatial analysis retrospectively beyond the era of digital cartography. However, given the large data volumes of such archives (e.g., more than 200,000 map sheets in the United States Geological Survey topographic map archive and the low graphical quality of older, manually-produced map sheets, the process to extract geographical information from these map archives needs to be automated to the highest degree possible. To understand the potential challenges (e.g., salient map characteristics and data quality variations in automating large-scale information extraction tasks for map archives, it is useful to efficiently assess spatio-temporal coverage, approximate map content, and spatial accuracy of georeferenced map sheets at different map scales. Such preliminary analytical steps are often neglected or ignored in the map processing literature but represent critical phases that lay the foundation for any subsequent computational processes including recognition. Exemplified for the United States Geological Survey topographic map and the Sanborn fire insurance map archives, we demonstrate how such preliminary analyses can be systematically conducted using traditional analytical and cartographic techniques, as well as visual-analytical data mining tools originating from machine learning and data science.

  17. ActionMap: A web-based software that automates loci assignments to framework maps.

    Science.gov (United States)

    Albini, Guillaume; Falque, Matthieu; Joets, Johann

    2003-07-01

    Genetic linkage computation may be a repetitive and time consuming task, especially when numerous loci are assigned to a framework map. We thus developed ActionMap, a web-based software that automates genetic mapping on a fixed framework map without adding the new markers to the map. Using this tool, hundreds of loci may be automatically assigned to the framework in a single process. ActionMap was initially developed to map numerous ESTs with a small plant mapping population and is limited to inbred lines and backcrosses. ActionMap is highly configurable and consists of Perl and PHP scripts that automate command steps for the MapMaker program. A set of web forms were designed for data import and mapping settings. Results of automatic mapping can be displayed as tables or drawings of maps and may be exported. The user may create personal access-restricted projects to store raw data, settings and mapping results. All data may be edited, updated or deleted. ActionMap may be used either online or downloaded for free (http://moulon.inra.fr/~bioinfo/).

  18. Voltage gradient mapping and electrophysiologically guided cryoablation in children with AVNRT.

    Science.gov (United States)

    Drago, Fabrizio; Battipaglia, Irma; Russo, Mario Salvatore; Remoli, Romolo; Pazzano, Vincenzo; Grifoni, Gino; Allegretti, Greta; Silvetti, Massimo Stefano

    2018-04-01

    Recently, voltage gradient mapping of Koch's triangle to find low-voltage connections, or 'voltage bridges', corresponding to the anatomic position of the slow pathway, has been introduced as a method to ablate atrioventricular nodal reentry tachycardia (AVNRT) in children. Thus, we aimed to assess the effectiveness of voltage mapping of Koch's triangle, combined with the search for the slow potential signal in 'low-voltage bridges', to guide cryoablation of AVNRT in children. From June 2015 to May 2016, 35 consecutive paediatric patients (mean age 12.1 ± 4.5 years) underwent 3D-guided cryoablation of AVNRT at our Institution. Fifteen children were enrolled as control group (mean age 14 ± 4 years). A voltage gradient mapping of Koch's triangle was obtained in all patients, showing low-voltage connections in all children with AVNRT but not in controls. Prior to performing cryoablation, we looked for the typical 'hump and spike' electrogram, generally considered to be representative of slow pathway potential within a low-voltage bridge. In all patients the 'hump and spike' electrogram was found inside bridges of low voltage. Focal or high-density linear lesions, extended or not, were delivered guided by low-voltage bridge visualization. Acute success rate was 100%, and no recurrence was reported at a mean follow-up of 8 ± 3 months. Voltage gradient mapping of Koch's triangle, combined with the search for the slow potential signal in low-voltage bridges, is effective in guiding cryoablation of AVNRT in paediatric patients, with a complete acute success rate and no AVNRT recurrences at mid-term follow-up.

  19. Initial study on in vivo conductivity mapping of breast cancer using MRI.

    Science.gov (United States)

    Shin, Jaewook; Kim, Min Jung; Lee, Joonsung; Nam, Yoonho; Kim, Min-Oh; Choi, Narae; Kim, Sooyeon; Kim, Dong-Hyun

    2015-08-01

    To develop and apply a method to measure in vivo electrical conductivity values using magnetic resonance imaging (MRI) in subjects with breast cancer. A recently developed technique named MREPT (MR electrical properties tomography) together with a novel coil combination process was used to quantify the conductivity values. The overall technique was validated using a phantom study. In addition, 90 subjects were imaged (50 subjects with previously biopsy-confirmed breast tumor and 40 normal subjects), which was approved by our institutional review board (IRB). A routine clinical protocol, specifically a T2 -weighted FSE (fast spin echo) imaging data, was used for reconstruction of conductivity. By employing the coil combination, the relative error in the conductivity map was reduced from ~70% to 10%. The average conductivity values in breast cancers regions (0.89 ± 0.33S/m) was higher compared to parenchymal tissue (0.43 S/m, P conductivity compared to benign cases (0.56 S/m, n = 5) (P conductivity compared to in situ cancers (0.57 S/m) (P conductivity mapping of breast cancers is feasible using a noninvasive in vivo MREPT technique combined with a coil combination process. The method may provide a tool in the MR diagnosis of breast cancer. © 2014 Wiley Periodicals, Inc.

  20. Design of a High Resolution Open Access Global Snow Cover Web Map Service Using Ground and Satellite Observations

    Science.gov (United States)

    Kadlec, J.; Ames, D. P.

    2014-12-01

    The aim of the presented work is creating a freely accessible, dynamic and re-usable snow cover map of the world by combining snow extent and snow depth datasets from multiple sources. The examined data sources are: remote sensing datasets (MODIS, CryoLand), weather forecasting model outputs (OpenWeatherMap, forecast.io), ground observation networks (CUAHSI HIS, GSOD, GHCN, and selected national networks), and user-contributed snow reports on social networks (cross-country and backcountry skiing trip reports). For adding each type of dataset, an interface and an adapter is created. Each adapter supports queries by area, time range, or combination of area and time range. The combined dataset is published as an online snow cover mapping service. This web service lowers the learning curve that is required to view, access, and analyze snow depth maps and snow time-series. All data published by this service are licensed as open data; encouraging the re-use of the data in customized applications in climatology, hydrology, sports and other disciplines. The initial version of the interactive snow map is on the website snow.hydrodata.org. This website supports the view by time and view by site. In view by time, the spatial distribution of snow for a selected area and time period is shown. In view by site, the time-series charts of snow depth at a selected location is displayed. All snow extent and snow depth map layers and time series are accessible and discoverable through internationally approved protocols including WMS, WFS, WCS, WaterOneFlow and WaterML. Therefore they can also be easily added to GIS software or 3rd-party web map applications. The central hypothesis driving this research is that the integration of user contributed data and/or social-network derived snow data together with other open access data sources will result in more accurate and higher resolution - and hence more useful snow cover maps than satellite data or government agency produced data by

  1. Crop Biometric Maps: The Key to Prediction

    Directory of Open Access Journals (Sweden)

    Francisco Rovira-Más

    2013-09-01

    Full Text Available The sustainability of agricultural production in the twenty-first century, both in industrialized and developing countries, benefits from the integration of farm management with information technology such that individual plants, rows, or subfields may be endowed with a singular “identity.” This approach approximates the nature of agricultural processes to the engineering of industrial processes. In order to cope with the vast variability of nature and the uncertainties of agricultural production, the concept of crop biometrics is defined as the scientific analysis of agricultural observations confined to spaces of reduced dimensions and known position with the purpose of building prediction models. This article develops the idea of crop biometrics by setting its principles, discussing the selection and quantization of biometric traits, and analyzing the mathematical relationships among measured and predicted traits. Crop biometric maps were applied to the case of a wine-production vineyard, in which vegetation amount, relative altitude in the field, soil compaction, berry size, grape yield, juice pH, and grape sugar content were selected as biometric traits. The enological potential of grapes was assessed with a quality-index map defined as a combination of titratable acidity, sugar content, and must pH. Prediction models for yield and quality were developed for high and low resolution maps, showing the great potential of crop biometric maps as a strategic tool for vineyard growers as well as for crop managers in general, due to the wide versatility of the methodology proposed.

  2. Crop biometric maps: the key to prediction.

    Science.gov (United States)

    Rovira-Más, Francisco; Sáiz-Rubio, Verónica

    2013-09-23

    The sustainability of agricultural production in the twenty-first century, both in industrialized and developing countries, benefits from the integration of farm management with information technology such that individual plants, rows, or subfields may be endowed with a singular "identity." This approach approximates the nature of agricultural processes to the engineering of industrial processes. In order to cope with the vast variability of nature and the uncertainties of agricultural production, the concept of crop biometrics is defined as the scientific analysis of agricultural observations confined to spaces of reduced dimensions and known position with the purpose of building prediction models. This article develops the idea of crop biometrics by setting its principles, discussing the selection and quantization of biometric traits, and analyzing the mathematical relationships among measured and predicted traits. Crop biometric maps were applied to the case of a wine-production vineyard, in which vegetation amount, relative altitude in the field, soil compaction, berry size, grape yield, juice pH, and grape sugar content were selected as biometric traits. The enological potential of grapes was assessed with a quality-index map defined as a combination of titratable acidity, sugar content, and must pH. Prediction models for yield and quality were developed for high and low resolution maps, showing the great potential of crop biometric maps as a strategic tool for vineyard growers as well as for crop managers in general, due to the wide versatility of the methodology proposed.

  3. Mapping with Drupal

    CERN Document Server

    Palazzolo, Alan

    2011-01-01

    Build beautiful interactive maps on your Drupal website, and tell engaging visual stories with your data. This concise guide shows you how to create custom geographical maps from top to bottom, using Drupal 7 tools and out-of-the-box modules. You'll learn how mapping works in Drupal, with examples on how to use intuitive interfaces to map local events, businesses, groups, and other custom data. Although building maps with Drupal can be tricky, this book helps you navigate the system's complexities for creating sophisticated maps that match your site design. Get the knowledge and tools you ne

  4. A unified theoretical framework for mapping models for the multi-state Hamiltonian.

    Science.gov (United States)

    Liu, Jian

    2016-11-28

    We propose a new unified theoretical framework to construct equivalent representations of the multi-state Hamiltonian operator and present several approaches for the mapping onto the Cartesian phase space. After mapping an F-dimensional Hamiltonian onto an F+1 dimensional space, creation and annihilation operators are defined such that the F+1 dimensional space is complete for any combined excitation. Commutation and anti-commutation relations are then naturally derived, which show that the underlying degrees of freedom are neither bosons nor fermions. This sets the scene for developing equivalent expressions of the Hamiltonian operator in quantum mechanics and their classical/semiclassical counterparts. Six mapping models are presented as examples. The framework also offers a novel way to derive such as the well-known Meyer-Miller model.

  5. Enhancing Learning Outcomes through New E-Textbooks: A Desirable Combination of Presentation Methods and Concept Maps

    Science.gov (United States)

    Huang, Kuo-Liang; Chen, Kuo-Hsiang; Ho, Chun-Heng

    2014-01-01

    It is possible that e-textbook readers and tablet PC's will become mainstream reading devices in the future. However, knowledge about instructional design in this field of learning sciences is inadequate. This study aimed to analyse how two factors, that is, presentation methods and concept maps, interact with cognitive load and learning…

  6. Extended substitution-diffusion based image cipher using chaotic standard map

    Science.gov (United States)

    Kumar, Anil; Ghose, M. K.

    2011-01-01

    This paper proposes an extended substitution-diffusion based image cipher using chaotic standard map [1] and linear feedback shift register to overcome the weakness of previous technique by adding nonlinearity. The first stage consists of row and column rotation and permutation which is controlled by the pseudo-random sequences which is generated by standard chaotic map and linear feedback shift register, second stage further diffusion and confusion is obtained in the horizontal and vertical pixels by mixing the properties of the horizontally and vertically adjacent pixels, respectively, with the help of chaotic standard map. The number of rounds in both stage are controlled by combination of pseudo-random sequence and original image. The performance is evaluated from various types of analysis such as entropy analysis, difference analysis, statistical analysis, key sensitivity analysis, key space analysis and speed analysis. The experimental results illustrate that performance of this is highly secured and fast.

  7. Ethanol induces MAP2 changes in organotypic hippocampal slice cultures

    DEFF Research Database (Denmark)

    Noraberg, J; Zimmer, J

    1998-01-01

    loss of CA3 pyramidal cells and moderate loss of dentate granule cells, as seen in vivo. The results indicate that brain slice cultures combined with immunostaining for cytoskeleton and neuronal markers can be used for studies of ethanol and organic solvent neurotoxicity.......Microtubule-associated protein 2 (MAP2) and neuron-specific protein (NeuN) immunostains were used to demonstrate neurotoxic effects in mature hippocampal slice cultures exposed to ethanol (50, 100, 200 mM) for 4 weeks. At the low dose the density of MAP2 immunostaining in the dentate molecular...... layer was 118% of the control cultures, with no detectable changes in CA1 and CA3. At 100 mM no changes were detected, while 200 mM ethanol significantly reduced the MAP2 density in both dentate (19%) and hippocampal dendritic fields (CA3, 52%; CA1, 55%). At this dose NeuN staining showed considerable...

  8. Use of ocean color scanner data in water quality mapping

    Science.gov (United States)

    Khorram, S.

    1981-01-01

    Remotely sensed data, in combination with in situ data, are used in assessing water quality parameters within the San Francisco Bay-Delta. The parameters include suspended solids, chlorophyll, and turbidity. Regression models are developed between each of the water quality parameter measurements and the Ocean Color Scanner (OCS) data. The models are then extended to the entire study area for mapping water quality parameters. The results include a series of color-coded maps, each pertaining to one of the water quality parameters, and the statistical analysis of the OCS data and regression models. It is found that concurrently collected OCS data and surface truth measurements are highly useful in mapping the selected water quality parameters and locating areas having relatively high biological activity. In addition, it is found to be virtually impossible, at least within this test site, to locate such areas on U-2 color and color-infrared photography.

  9. Mapping daily evapotranspiration at field scales over rainfed and irrigated agricultural areas using remote sensing data fusion

    Science.gov (United States)

    A continuous monitoring of daily evapotranspiration (ET) at field scale can be achieved by combining thermal infrared remote sensing data information from multiple satellite platforms. Here, an integrated approach to field scale ET mapping is described, combining multi-scale surface energy balance e...

  10. Topoclimatic map of the littoral zone in Slovenian Istria

    Directory of Open Access Journals (Sweden)

    Darko Ogrin

    2011-12-01

    Full Text Available The paper presents the basic topoclimatic features of the littoral zone in Slovenian Istria which result from general climate features and specific local conditions. The most widely spatially spread topoclimatic units arise from differences in insolation and the combination of local landforms and land use. They are presented on the map at a scale of 1 : 50,000.

  11. Stimulus-response mappings shape inhibition processes: a combined EEG-fMRI study of contextual stopping.

    Directory of Open Access Journals (Sweden)

    Christina F Lavallee

    Full Text Available Humans are rarely faced with one simple task, but are typically confronted with complex stimulus constellations and varying stimulus-relevance in a given situation. Through modifying the prototypical stop-signal task and by combined recording and analysis of electroencephalography (EEG and functional magnetic resonance imaging (fMRI, we studied the effects of stimulus relevance for the generation of a response or its inhibition. Stimulus response mappings were modified by contextual cues, indicating which of two different stimuli following a go stimulus was relevant for stopping. Overall, response inhibition, that is comparing successful stopping to a stop-signal against go-signal related processes, was associated with increased activity in right inferior and left midfrontal regions, as well as increased EEG delta and theta power; however, stimulus-response conditions in which the most infrequent stop-signal was relevant for inhibition, were associated with decreased activity in regions typically involved in response inhibition, as well as decreased activity in the delta and theta bands as compared to conditions wherein the relevant stop-signal frequency was higher. Behaviorally, this (aforementioned condition, which demanded inhibition only from the most infrequent stimulus, was also associated with reduced reaction times and lower error rates. This pattern of results does not align with typical stimulus frequency-driven findings and suggests interplay between task relevance and stimulus frequency of the stop-signal. Moreover, with a multimodal EEG-fMRI analysis, we demonstrated significant parameterization for response inhibition with delta, theta and beta time-frequency values, which may be interpreted as reflecting conflict monitoring, evaluative and/or motor processes as suggested by previous work (Huster et al., 2013; Aron, 2011. Further multimodal results suggest a possible neurophysiological and behavioral benefit under conditions

  12. Physical Mapping of Bread Wheat Chromosome 5A: An Integrated Approach

    Directory of Open Access Journals (Sweden)

    Delfina Barabaschi

    2015-11-01

    Full Text Available The huge size, redundancy, and highly repetitive nature of the bread wheat [ (L.] genome, makes it among the most difficult species to be sequenced. To overcome these limitations, a strategy based on the separation of individual chromosomes or chromosome arms and the subsequent production of physical maps was established within the frame of the International Wheat Genome Sequence Consortium (IWGSC. A total of 95,812 bacterial artificial chromosome (BAC clones of short-arm chromosome 5A (5AS and long-arm chromosome 5A (5AL arm-specific BAC libraries were fingerprinted and assembled into contigs by complementary analytical approaches based on the FingerPrinted Contig (FPC and Linear Topological Contig (LTC tools. Combined anchoring approaches based on polymerase chain reaction (PCR marker screening, microarray, and sequence homology searches applied to several genomic tools (i.e., genetic maps, deletion bin map, neighbor maps, BAC end sequences (BESs, genome zipper, and chromosome survey sequences allowed the development of a high-quality physical map with an anchored physical coverage of 75% for 5AS and 53% for 5AL with high portions (64 and 48%, respectively of contigs ordered along the chromosome. In the genome of grasses, [ (L. Beauv.], rice ( L., and sorghum [ (L. Moench] homologs of genes on wheat chromosome 5A were separated into syntenic blocks on different chromosomes as a result of translocations and inversions during evolution. The physical map presented represents an essential resource for fine genetic mapping and map-based cloning of agronomically relevant traits and a reference for the 5A sequencing projects.

  13. Marine habitat mapping of the Milford Haven Waterway, Wales, UK: Comparison of facies mapping and EUNIS classification for monitoring sediment habitats in an industrialized estuary

    Science.gov (United States)

    Carey, Drew A.; Hayn, Melanie; Germano, Joseph D.; Little, David I.; Bullimore, Blaise

    2015-06-01

    mapping. Cross-walk was conducted by assigning each facies (or group of facies) to a EUNIS habitat (Levels 3 or 5) and compiling maps comparing facies distribution with EUNIS habitat distribution. The facies approach provides critical information on landscape-scale habitats including relative location and inferred sediment transport processes. The SPI/PV approach cannot consistently identify key species contained within the EUNIS Level 5 Habitats. For regional planning and monitoring efforts, a combination of EUNIS classification and facies description provides the greatest flexibility for management of dynamic soft-bottom habitats in coastal estuaries. The combined approach can be used to generate and test hypotheses of linkages between biological characteristics (EUNIS) and physical characteristics (facies). This approach is practical if a robust cross-walk methodology is developed to utilize both classification approaches. SPI/PV technology can be an effective rapid ground truth method for refining marine habitat maps based on predictive models.

  14. A comparative map viewer integrating genetic maps for Brassica and Arabidopsis

    Directory of Open Access Journals (Sweden)

    Erwin Timothy A

    2007-07-01

    Full Text Available Abstract Background Molecular genetic maps provide a means to link heritable traits with underlying genome sequence variation. Several genetic maps have been constructed for Brassica species, yet to date, there has been no simple means to compare this information or to associate mapped traits with the genome sequence of the related model plant, Arabidopsis. Description We have developed a comparative genetic map database for the viewing, comparison and analysis of Brassica and Arabidopsis genetic, physical and trait map information. This web-based tool allows users to view and compare genetic and physical maps, search for traits and markers, and compare genetic linkage groups within and between the amphidiploid and diploid Brassica genomes. The inclusion of Arabidopsis data enables comparison between Brassica maps that share no common markers. Analysis of conserved syntenic blocks between Arabidopsis and collated Brassica genetic maps validates the application of this system. This tool is freely available over the internet on http://bioinformatics.pbcbasc.latrobe.edu.au/cmap. Conclusion This database enables users to interrogate the relationship between Brassica genetic maps and the sequenced genome of A. thaliana, permitting the comparison of genetic linkage groups and mapped traits and the rapid identification of candidate genes.

  15. Geologic Mapping of the Olympus Mons Volcano, Mars

    Science.gov (United States)

    Bleacher, J. E.; Williams, D. A.; Shean, D.; Greeley, R.

    2012-01-01

    We are in the third year of a three-year Mars Data Analysis Program project to map the morphology of the Olympus Mons volcano, Mars, using ArcGIS by ESRI. The final product of this project is to be a 1:1,000,000-scale geologic map. The scientific questions upon which this mapping project is based include understanding the volcanic development and modification by structural, aeolian, and possibly glacial processes. The project s scientific objectives are based upon preliminary mapping by Bleacher et al. [1] along a approx.80-km-wide north-south swath of the volcano corresponding to High Resolution Stereo Camera (HRSC) image h0037. The preliminary project, which covered approx.20% of the volcano s surface, resulted in several significant findings, including: 1) channel-fed lava flow surfaces are areally more abundant than tube-fed surfaces by a ratio of 5:1, 2) channel-fed flows consistently embay tube-fed flows, 3) lava fans appear to be linked to tube-fed flows, 4) no volcanic vents were identified within the map region, and 5) a Hummocky unit surrounds the summit and is likely a combination of non-channelized flows, dust, ash, and/or frozen volatiles. These results led to the suggestion that the volcano had experienced a transition from long-lived tube-forming eruptions to more sporadic and shorter-lived, channel-forming eruptions, as seen at Hawaiian volcanoes between the tholeiitic shield building phase (Kilauea to Mauna Loa) and alkalic capping phase (Hualalai and Mauna Kea).

  16. Combining Fuzzy AHP with GIS and Decision Rules for Industrial Site Selection

    Directory of Open Access Journals (Sweden)

    Aissa Taibi

    2017-12-01

    Full Text Available This study combines Fuzzy Analytic Hierarchy Process (FAHP, Geographic Information System (GIS and Decision rules to provide decision makers with a ranking model for industrial sites in Algeria. A ranking of the suitable industrial areas is a crucial multi-criteria decision problem based on socio-economical and technical criteria as on environmental considerations. Fuzzy AHP is used for assessment of the candidate industrial sites by combining fuzzy set theory and analytic hierarchy process (AHP. The decision rule base serves as a filter that performs criteria pre-treatment involving a reduction of their numbers. GIS is used to overlay, generate criteria maps and for visualizing ranked zones on the map. The rank of a zone so obtained is an index that guides decision-makers to the best utilization of the zone in future.

  17. Combining Shape-Changing Interfaces and Spatial Augmented Reality Enables Extended Object Appearance

    DEFF Research Database (Denmark)

    Lindlbauer, David; Grønbæk, Jens Emil; Birk, Morten

    2016-01-01

    We propose combining shape-changing interfaces and spatial augmented reality for extending the space of appearances and interactions of actuated interfaces. While shape-changing interfaces can dynamically alter the physical appearance of objects, the integration of spatial augmented reality...... for increasing the realism of 3D objects such as bump mapping. This extensible framework helps us identify challenges of the two techniques and benefits of their combination. We utilize our prototype shape-changing device enriched with spatial augmented reality through projection mapping to demonstrate...... the concept. We present a novel mechanical distance-fields algorithm for real-time fitting of mechanically constrained shape-changing devices to arbitrary 3D graphics. Furthermore, we present a technique for increasing effective screen real estate for spatial augmented reality through view-dependent shape...

  18. Transport maps and dimension reduction for Bayesian computation

    KAUST Repository

    Marzouk, Youssef

    2015-01-01

    We introduce a new framework for efficient sampling from complex probability distributions, using a combination of optimal transport maps and the Metropolis-Hastings rule. The core idea is to use continuous transportation to transform typical Metropolis proposal mechanisms (e.g., random walks, Langevin methods) into non-Gaussian proposal distributions that can more effectively explore the target density. Our approach adaptively constructs a lower triangular transport map—an approximation of the Knothe-Rosenblatt rearrangement—using information from previous MCMC states, via the solution of an optimization problem. This optimization problem is convex regardless of the form of the target distribution. It is solved efficiently using a Newton method that requires no gradient information from the target probability distribution; the target distribution is instead represented via samples. Sequential updates enable efficient and parallelizable adaptation of the map even for large numbers of samples. We show that this approach uses inexact or truncated maps to produce an adaptive MCMC algorithm that is ergodic for the exact target distribution. Numerical demonstrations on a range of parameter inference problems show order-of-magnitude speedups over standard MCMC techniques, measured by the number of effectively independent samples produced per target density evaluation and per unit of wallclock time. We will also discuss adaptive methods for the construction of transport maps in high dimensions, where use of a non-adapted basis (e.g., a total order polynomial expansion) can become computationally prohibitive. If only samples of the target distribution, rather than density evaluations, are available, then we can construct high-dimensional transformations by composing sparsely parameterized transport maps with rotations of the parameter space. If evaluations of the target density and its gradients are available, then one can exploit the structure of the variational

  19. Transport maps and dimension reduction for Bayesian computation

    KAUST Repository

    Marzouk, Youssef

    2015-01-07

    We introduce a new framework for efficient sampling from complex probability distributions, using a combination of optimal transport maps and the Metropolis-Hastings rule. The core idea is to use continuous transportation to transform typical Metropolis proposal mechanisms (e.g., random walks, Langevin methods) into non-Gaussian proposal distributions that can more effectively explore the target density. Our approach adaptively constructs a lower triangular transport map—an approximation of the Knothe-Rosenblatt rearrangement—using information from previous MCMC states, via the solution of an optimization problem. This optimization problem is convex regardless of the form of the target distribution. It is solved efficiently using a Newton method that requires no gradient information from the target probability distribution; the target distribution is instead represented via samples. Sequential updates enable efficient and parallelizable adaptation of the map even for large numbers of samples. We show that this approach uses inexact or truncated maps to produce an adaptive MCMC algorithm that is ergodic for the exact target distribution. Numerical demonstrations on a range of parameter inference problems show order-of-magnitude speedups over standard MCMC techniques, measured by the number of effectively independent samples produced per target density evaluation and per unit of wallclock time. We will also discuss adaptive methods for the construction of transport maps in high dimensions, where use of a non-adapted basis (e.g., a total order polynomial expansion) can become computationally prohibitive. If only samples of the target distribution, rather than density evaluations, are available, then we can construct high-dimensional transformations by composing sparsely parameterized transport maps with rotations of the parameter space. If evaluations of the target density and its gradients are available, then one can exploit the structure of the variational

  20. Mapping social values of ecosystem services: What is behind the map?

    Directory of Open Access Journals (Sweden)

    Laura Nahuelhual

    2016-09-01

    Full Text Available A growing interest in mapping the social value of ecosystem services (ES is not yet methodologically aligned with what is actually being mapped. We critically examine aspects of the social value mapping process that might influence map outcomes and limit their practical use in decision making. We rely on an empirical case of participatory mapping, for a single ES (recreation opportunities, which involves diverse stakeholders such as planners, researchers, and community representatives. Value elicitation relied on an individual open-ended interview and a mapping exercise. Interpretation of the narratives and GIS calculations of proximity, centrality, and dispersion helped in exploring the factors driving participants' answers. Narratives reveal diverse value types. Whereas planners highlighted utilitarian and aesthetic values, the answers from researchers revealed naturalistic values as well. In turn community representatives acknowledged symbolic values. When remitted to the map, these values were constrained to statements toward a much narrower set of features of the physical (e.g., volcanoes and built landscape (e.g., roads. The results suggest that mapping, as an instrumental approach toward social valuation, may capture only a subset of relevant assigned values. This outcome is the interplay between participants' characteristics, including their acquaintance with the territory and their ability with maps, and the mapping procedure itself, including the proxies used to represent the ES and the value typology chosen, the elicitation question, the cartographic features displayed on the base map, and the spatial scale.

  1. Integrating Volcanic Hazard Data in a Systematic Approach to Develop Volcanic Hazard Maps in the Lesser Antilles

    Directory of Open Access Journals (Sweden)

    Jan M. Lindsay

    2018-04-01

    Full Text Available We report on the process of generating the first suite of integrated volcanic hazard zonation maps for the islands of Dominica, Grenada (including Kick ‘em Jenny and Ronde/Caille, Nevis, Saba, St. Eustatius, St. Kitts, Saint Lucia, and St Vincent in the Lesser Antilles. We developed a systematic approach that accommodated the range in prior knowledge of the volcanoes in the region. A first-order hazard assessment for each island was used to develop one or more scenario(s of likely future activity, for which scenario-based hazard maps were generated. For the most-likely scenario on each island we also produced a poster-sized integrated volcanic hazard zonation map, which combined the individual hazardous phenomena depicted in the scenario-based hazard maps into integrated hazard zones. We document the philosophy behind the generation of this suite of maps, and the method by which hazard information was combined to create integrated hazard zonation maps, and illustrate our approach through a case study of St. Vincent. We also outline some of the challenges we faced using this approach, and the lessons we have learned by observing how stakeholders have interacted with the maps over the past ~10 years. Based on our experience, we recommend that future map makers involve stakeholders in the entire map generation process, especially when making design choices such as type of base map, use of colour and gradational boundaries, and indeed what to depict on the map. We also recommend careful consideration of how to evaluate and depict offshore hazard of island volcanoes, and recommend computer-assisted modelling of all phenomena to generate more realistic hazard footprints. Finally, although our systematic approach to integrating individual hazard data into zones generally worked well, we suggest that a better approach might be to treat the integration of hazards on a case-by-case basis to ensure the final product meets map users' needs. We hope that

  2. A review of monopolar motor mapping and a comprehensive guide to continuous dynamic motor mapping for resection of motor eloquent brain tumors.

    Science.gov (United States)

    Schucht, P; Seidel, K; Jilch, A; Beck, J; Raabe, A

    2017-06-01

    Monopolar mapping of motor function differs from the most commonly used method of intraoperative mapping, i.e. bipolar direct electrical stimulation at 50-60Hz (Penfield technique mapping). Most importantly, the monopolar probe emits a radial, homogenous electrical field different to the more focused inter-tip bipolar electrical field. Most users combine monopolar stimulation with the short train technique, also called high frequency stimulation, or train-of-five techniques. It consists of trains of four to nine monopolar rectangular electrical pulses of 200-500μs pulse length with an inter stimulus interval of 2-4msec. High frequency short train stimulation triggers a time-locked motor-evoked potential response, which has a defined latency and an easily quantifiable amplitude. In this way, motor thresholds might be used to evaluate a current-to-distance relation. The homogeneous electrical field and the current-to-distance approximation provide the surgeon with an estimate of the remaining distance to the corticospinal tract, enabling the surgeon to adjust the speed of resection as the corticospinal tract is approached. Furthermore, this stimulation paradigm is associated with a lower incidence of intraoperative seizures, allowing continuous stimulation. Hence, monopolar mapping is increasingly used as part of a strategy of continuous dynamic mapping: ergonomically integrated into the surgeon's tools, the monopolar probe reliably provides continuous/uninterrupted feedback on motor function. As part of this strategy, motor mapping is not any longer a time consuming interruption of resection but rather a radar-like, real-time information system on the spatial relationship of the current resection site to eloquent motor structures. Copyright © 2017. Published by Elsevier Masson SAS.

  3. Complete genome sequence and integrated protein localization and interaction map for alfalfa dwarf virus, which combines properties of both cytoplasmic and nuclear plant rhabdoviruses

    Energy Technology Data Exchange (ETDEWEB)

    Bejerman, Nicolás, E-mail: n.bejerman@uq.edu.au [Instituto de Patología Vegetal (IPAVE), Centro de Investigaciones Agropecuarias (CIAP), Instituto Nacional de Tecnología Agropecuaria INTA, Camino a 60 Cuadras k 5,5, Córdoba X5020ICA (Argentina); Queensland Alliance for Agriculture and Food Innovation, The University of Queensland, St Lucia, QLD 4072 (Australia); Giolitti, Fabián; Breuil, Soledad de; Trucco, Verónica; Nome, Claudia; Lenardon, Sergio [Instituto de Patología Vegetal (IPAVE), Centro de Investigaciones Agropecuarias (CIAP), Instituto Nacional de Tecnología Agropecuaria INTA, Camino a 60 Cuadras k 5,5, Córdoba X5020ICA (Argentina); Dietzgen, Ralf G. [Queensland Alliance for Agriculture and Food Innovation, The University of Queensland, St Lucia, QLD 4072 (Australia)

    2015-09-15

    Summary: We have determined the full-length 14,491-nucleotide genome sequence of a new plant rhabdovirus, alfalfa dwarf virus (ADV). Seven open reading frames (ORFs) were identified in the antigenomic orientation of the negative-sense, single-stranded viral RNA, in the order 3′-N-P-P3-M-G-P6-L-5′. The ORFs are separated by conserved intergenic regions and the genome coding region is flanked by complementary 3′ leader and 5′ trailer sequences. Phylogenetic analysis of the nucleoprotein amino acid sequence indicated that this alfalfa-infecting rhabdovirus is related to viruses in the genus Cytorhabdovirus. When transiently expressed as GFP fusions in Nicotiana benthamiana leaves, most ADV proteins accumulated in the cell periphery, but unexpectedly P protein was localized exclusively in the nucleus. ADV P protein was shown to have a homotypic, and heterotypic nuclear interactions with N, P3 and M proteins by bimolecular fluorescence complementation. ADV appears unique in that it combines properties of both cytoplasmic and nuclear plant rhabdoviruses. - Highlights: • The complete genome of alfalfa dwarf virus is obtained. • An integrated localization and interaction map for ADV is determined. • ADV has a genome sequence similarity and evolutionary links with cytorhabdoviruses. • ADV protein localization and interaction data show an association with the nucleus. • ADV combines properties of both cytoplasmic and nuclear plant rhabdoviruses.

  4. Complete genome sequence and integrated protein localization and interaction map for alfalfa dwarf virus, which combines properties of both cytoplasmic and nuclear plant rhabdoviruses

    International Nuclear Information System (INIS)

    Bejerman, Nicolás; Giolitti, Fabián; Breuil, Soledad de; Trucco, Verónica; Nome, Claudia; Lenardon, Sergio; Dietzgen, Ralf G.

    2015-01-01

    Summary: We have determined the full-length 14,491-nucleotide genome sequence of a new plant rhabdovirus, alfalfa dwarf virus (ADV). Seven open reading frames (ORFs) were identified in the antigenomic orientation of the negative-sense, single-stranded viral RNA, in the order 3′-N-P-P3-M-G-P6-L-5′. The ORFs are separated by conserved intergenic regions and the genome coding region is flanked by complementary 3′ leader and 5′ trailer sequences. Phylogenetic analysis of the nucleoprotein amino acid sequence indicated that this alfalfa-infecting rhabdovirus is related to viruses in the genus Cytorhabdovirus. When transiently expressed as GFP fusions in Nicotiana benthamiana leaves, most ADV proteins accumulated in the cell periphery, but unexpectedly P protein was localized exclusively in the nucleus. ADV P protein was shown to have a homotypic, and heterotypic nuclear interactions with N, P3 and M proteins by bimolecular fluorescence complementation. ADV appears unique in that it combines properties of both cytoplasmic and nuclear plant rhabdoviruses. - Highlights: • The complete genome of alfalfa dwarf virus is obtained. • An integrated localization and interaction map for ADV is determined. • ADV has a genome sequence similarity and evolutionary links with cytorhabdoviruses. • ADV protein localization and interaction data show an association with the nucleus. • ADV combines properties of both cytoplasmic and nuclear plant rhabdoviruses

  5. Google Maps offers a new way to evaluate claudication.

    Science.gov (United States)

    Khambati, Husain; Boles, Kim; Jetty, Prasad

    2017-05-01

    Accurate determination of walking capacity is important for the clinical diagnosis and management plan for patients with peripheral arterial disease. The current "gold standard" of measurement is walking distance on a treadmill. However, treadmill testing is not always reflective of the patient's natural walking conditions, and it may not be fully accessible in every vascular clinic. The objective of this study was to determine whether Google Maps, the readily available GPS-based mapping tool, offers an accurate and accessible method of evaluating walking distances in vascular claudication patients. Patients presenting to the outpatient vascular surgery clinic between November 2013 and April 2014 at the Ottawa Hospital with vasculogenic calf, buttock, and thigh claudication symptoms were identified and prospectively enrolled in our study. Onset of claudication symptoms and maximal walking distance (MWD) were evaluated using four tools: history; Walking Impairment Questionnaire (WIQ), a validated claudication survey; Google Maps distance calculator (patients were asked to report their daily walking routes on the Google Maps-based tool runningmap.com, and walking distances were calculated accordingly); and treadmill testing for onset of symptoms and MWD, recorded in a double-blinded fashion. Fifteen patients were recruited for the study. Determination of walking distances using Google Maps proved to be more accurate than by both clinical history and WIQ, correlating highly with the gold standard of treadmill testing for both claudication onset (r = .805; P Google Maps tool was also efficient, with reporting times averaging below 4 minutes. For vascular claudicants with no other walking limitations, Google Maps is a promising new tool that combines the objective strengths of the treadmill test and incorporates real-world walking environments. It offers an accurate, efficient, inexpensive, and readily accessible way to assess walking distances in patients with

  6. Combinations of complex dynamical systems

    CERN Document Server

    Pilgrim, Kevin M

    2003-01-01

    This work is a research-level monograph whose goal is to develop a general combination, decomposition, and structure theory for branched coverings of the two-sphere to itself, regarded as the combinatorial and topological objects which arise in the classification of certain holomorphic dynamical systems on the Riemann sphere. It is intended for researchers interested in the classification of those complex one-dimensional dynamical systems which are in some loose sense tame. The program is motivated by the dictionary between the theories of iterated rational maps and Kleinian groups.

  7. Mapping wetlands in Nova Scotia with multi-beam RADARSAT-2 Polarimetric SAR, optical satellite imagery, and Lidar data

    Science.gov (United States)

    Jahncke, Raymond; Leblon, Brigitte; Bush, Peter; LaRocque, Armand

    2018-06-01

    Wetland maps currently in use by the Province of Nova Scotia, namely the Department of Natural Resources (DNR) wetland inventory map and the swamp wetland classes of the DNR forest map, need to be updated. In this study, wetlands were mapped in an area southwest of Halifax, Nova Scotia by classifying a combination of multi-date and multi-beam RADARSAT-2 C-band polarimetric SAR (polSAR) images with spring Lidar, and fall QuickBird optical data using the Random Forests (RF) classifier. The resulting map has five wetland classes (open-water/marsh complex, open bog, open fen, shrub/treed fen/bog, swamp), plus lakes and various upland classes. Its accuracy was assessed using data from 156 GPS wetland sites collected in 2012 and compared to the one obtained with the current wetland map of Nova Scotia. The best overall classification was obtained using a combination of Lidar, RADARSAT-2 HH, HV, VH, VV intensity with polarimetric variables, and QuickBird multispectral (89.2%). The classified image was compared to GPS validation sites to assess the mapping accuracy of the wetlands. It was first done considering a group consisting of all wetland classes including lakes. This showed that only 69.9% of the wetland sites were correctly identified when only the QuickBird classified image was used in the classification. With the addition of variables derived from lidar, the number of correctly identified wetlands increased to 88.5%. The accuracy remained the same with the addition of RADARSAT-2 (88.5%). When we tested the accuracy for identifying wetland classes (e.g. marsh complex vs. open bog) instead of grouped wetlands, the resulting wetland map performed best with either QuickBird and Lidar, or QuickBird, Lidar, and RADARSAT-2 (66%). The Province of Nova Scotia's current wetland inventory and its associated wetland classes (aerial-photo interpreted) were also assessed against the GPS wetland sites. This provincial inventory correctly identified 62.2% of the grouped wetlands

  8. High-Performance Signal Detection for Adverse Drug Events using MapReduce Paradigm.

    Science.gov (United States)

    Fan, Kai; Sun, Xingzhi; Tao, Ying; Xu, Linhao; Wang, Chen; Mao, Xianling; Peng, Bo; Pan, Yue

    2010-11-13

    Post-marketing pharmacovigilance is important for public health, as many Adverse Drug Events (ADEs) are unknown when those drugs were approved for marketing. However, due to the large number of reported drugs and drug combinations, detecting ADE signals by mining these reports is becoming a challenging task in terms of computational complexity. Recently, a parallel programming model, MapReduce has been introduced by Google to support large-scale data intensive applications. In this study, we proposed a MapReduce-based algorithm, for common ADE detection approach, Proportional Reporting Ratio (PRR), and tested it in mining spontaneous ADE reports from FDA. The purpose is to investigate the possibility of using MapReduce principle to speed up biomedical data mining tasks using this pharmacovigilance case as one specific example. The results demonstrated that MapReduce programming model could improve the performance of common signal detection algorithm for pharmacovigilance in a distributed computation environment at approximately liner speedup rates.

  9. Ray calibration and phase mapping for structured-light-field 3D reconstruction.

    Science.gov (United States)

    Cai, Zewei; Liu, Xiaoli; Peng, Xiang; Gao, Bruce Z

    2018-03-19

    In previous work, we presented a structured light field (SLF) method combining light field imaging with structured illumination to perform multi-view depth measurement. However, the previous work just accomplishes depth rather than 3D reconstruction. In this paper, we propose a novel active method involving ray calibration and phase mapping, to achieve SLF 3D reconstruction. We performed the ray calibration for the first time to determine each light field ray with metric spatio-angular parameters, making the SLF realize multi-view 3D reconstruction. Based on the ray parametric equation, we further derived the phase mapping in the SLF that spatial coordinates can be directly mapped from phase. A flexible calibration strategy was correspondently designed to determine mapping coefficients for each light field ray, achieving high-efficiency SLF 3D reconstruction. Experimental results demonstrated that the proposed method was suitable for high-efficiency multi-view 3D reconstruction in the SLF.

  10. Method of Automatic Ontology Mapping through Machine Learning and Logic Mining

    Institute of Scientific and Technical Information of China (English)

    王英林

    2004-01-01

    Ontology mapping is the bottleneck of handling conflicts among heterogeneous ontologies and of implementing reconfiguration or interoperability of legacy systems. We proposed an ontology mapping method by using machine learning, type constraints and logic mining techniques. This method is able to find concept correspondences through instances and the result is optimized by using an error function; it is able to find attribute correspondence between two equivalent concepts and the mapping accuracy is enhanced by combining together instances learning, type constraints and the logic relations that are imbedded in instances; moreover, it solves the most common kind of categorization conflicts. We then proposed a merging algorithm to generate the shared ontology and proposed a reconfigurable architecture for interoperation based on multi agents. The legacy systems are encapsulated as information agents to participate in the integration system. Finally we give a simplified case study.

  11. OPERATIONAL SAR DATA PROCESSING IN GIS ENVIRONMENTS FOR RAPID DISASTER MAPPING

    Directory of Open Access Journals (Sweden)

    A. Meroni

    2013-05-01

    Full Text Available Having access to SAR data can be highly important and critical especially for disaster mapping. Updating a GIS with contemporary information from SAR data allows to deliver a reliable set of geospatial information to advance civilian operations, e.g. search and rescue missions. Therefore, we present in this paper the operational processing of SAR data within a GIS environment for rapid disaster mapping. This is exemplified by the November 2010 flash flood in the Veneto region, Italy. A series of COSMO-SkyMed acquisitions was processed in ArcGIS® using a single-sensor, multi-mode, multi-temporal approach. The relevant processing steps were combined using the ArcGIS ModelBuilder to create a new model for rapid disaster mapping in ArcGIS, which can be accessed both via a desktop and a server environment.

  12. Effects of hydrogen peroxide, modified atmosphere and their combination on quality of minimally processed cluster beans.

    Science.gov (United States)

    Waghmare, Roji B; Annapure, Uday S

    2017-10-01

    The aim of this study was to determine the potential of hydrogen peroxide (H 2 O 2 ) and modified atmosphere packaging (MAP) on quality of fresh-cut cluster beans. Fresh-cut cluster beans were dipped in a solution of 2% H 2 O 2 for 2 min, packed in an atmosphere of (5% O 2 , 10% CO 2 , 85% N 2 ) and stored in polypropylene bags at 5 °C for 35 days. Passive MAP was created by consuming O 2 and producing CO 2 by fresh-cut cluster beans. The combined effect of H 2 O 2 and MAP on physico-chemical analysis (Headspace gas, weight loss, chlorophyll, hardness and color), microbial quality (mesophilic aerobics and yeasts and molds) and sensory analysis were studied. Chemical treatment and MAP both are equally effective in extending the shelf life at 5 °C for 28 days. Hence, MAP can be an alternative for chemical treatment to achieve a shelf life of 28 days for fresh-cut cluster beans. Control samples, without chemical treatment and modified atmosphere, stored at 5 °C were spoiled after 14 days. Chemical treatment followed by MAP underwent minimum changes in weight, chlorophyll, hardness and color of fresh-cut cluster beans. Combination treatment gives a storage life of 35 days.

  13. Validation and application of Acoustic Mapping Velocimetry

    Science.gov (United States)

    Baranya, Sandor; Muste, Marian

    2016-04-01

    The goal of this paper is to introduce a novel methodology to estimate bedload transport in rivers based on an improved bedform tracking procedure. The measurement technique combines components and processing protocols from two contemporary nonintrusive instruments: acoustic and image-based. The bedform mapping is conducted with acoustic surveys while the estimation of the velocity of the bedforms is obtained with processing techniques pertaining to image-based velocimetry. The technique is therefore called Acoustic Mapping Velocimetry (AMV). The implementation of this technique produces a whole-field velocity map associated with the multi-directional bedform movement. Based on the calculated two-dimensional bedform migration velocity field, the bedload transport estimation is done using the Exner equation. A proof-of-concept experiment was performed to validate the AMV based bedload estimation in a laboratory flume at IIHR-Hydroscience & Engineering (IIHR). The bedform migration was analysed at three different flow discharges. Repeated bed geometry mapping, using a multiple transducer array (MTA), provided acoustic maps, which were post-processed with a particle image velocimetry (PIV) method. Bedload transport rates were calculated along longitudinal sections using the streamwise components of the bedform velocity vectors and the measured bedform heights. The bulk transport rates were compared with the results from concurrent direct physical samplings and acceptable agreement was found. As a first field implementation of the AMV an attempt was made to estimate bedload transport for a section of the Ohio river in the United States, where bed geometry maps, resulted by repeated multibeam echo sounder (MBES) surveys, served as input data. Cross-sectional distributions of bedload transport rates from the AMV based method were compared with the ones obtained from another non-intrusive technique (due to the lack of direct samplings), ISSDOTv2, developed by the US Army

  14. Identification and mapping the high nature value farmland by the comparison of a combined and species approaches in Tuscany, Italy

    Directory of Open Access Journals (Sweden)

    Giulio Lazzerini

    2015-09-01

    Full Text Available Low-intensity farming systems play a crucial role in nature conservation by preserving 50% of habitats, flora and fauna occurring in Europe. For this reason the identification, classification and mapping of high nature value farmlands (HNVfs is becoming an overriding concern. In this study, two different approaches, namely combined approach and species-based approach, were used to spatially identify HNVfs (type 1, 2 and 3 across Tuscany region (Italy. The first approach calculated different indicators (extensive practices indicator, crop diversity indicator, landscape element indicator at 1×1 km grid cell spatial resolution using pre-existent spatial datasets integrated within a global information system environment. Whilst, the speciesbased approach relied on a pre-existent regional naturalistic inventory. All indicators and the resulting HNVfs derived from the two approaches were aggregated at municipality level. Despite some difference, the two adopted approaches intercepted spatially the same HNVfs areas, accounting for 35% of the total utilised agricultural area of the region. Just 16% of HNVfs resulted located inside protected areas, thus under current conservation and protection management actions. Finally, HNVfs of the Tuscany region were spatially aggregated in four relevant agro-ecosystems by taking into consideration the cropping systems and the landscape elements’ characteristics peculiar in the region.

  15. [Construction of genetic linkage map and localization of NBS-LRR like resistance gene analogues in cauliflower (Brassica oleracea var. botrytis)].

    Science.gov (United States)

    Gu, Yu; Zhao, Qian-Cheng; Sun, De-Ling; Song, Wen-Qin

    2007-06-01

    Nucleotide binding site (NBS) profiling, a new method was used to map resistance gene analogues (RGAs) in cauliflower (Brassica oleracea var. botrytis). This method allows amplification and the mapping of genetic markers anchored in the conserved NBS encoding domain of plant disease resistance genes. AFLP was also performed to construct the cauliflower intervarietal genetic map. The aim of constructing genetic map was to identify potential molecular markers linked to important agronomic traits that would be particularly useful for development and improving the species. Using 17 AFLP primer combinations and two degeneration primer/enzyme combinations, a total of 234 AFLP markers and 21 NBS markers were mapped in the F2 population derived from self-pollinating a single F1 plant of the cross AD White Flower x C-8. The markers were mapped in 9 of major linkage groups spanning 668.4 cM, with an average distance of 2.9 cM between adjacent mapped markers. The AFLP markers were well distributed throughout the linkage groups. The linkage groups contained from 12 to 47 loci each and the distance between two consecutive loci ranged from 0 to 14.9 cM. NBS markers were mapped on 8 of the 9 linkage groups of the genetic map. Most of these markers were organized in clusters. This result demonstrates the feasibility of the NBS-profiling method for generating NBS markers for resistance loci in cauliflower. The clustering of the markers mapped in this study adds to the evidence that most of them could be real RGAs.

  16. Development of a competency mapping tool for undergraduate professional degree programmes, using mechanical engineering as a case study

    Science.gov (United States)

    Holmes, David W.; Sheehan, Madoc; Birks, Melanie; Smithson, John

    2018-01-01

    Mapping the curriculum of a professional degree to the associated competency standard ensures graduates have the competence to perform as professionals. Existing approaches to competence mapping vary greatly in depth, complexity, and effectiveness, and a standardised approach remains elusive. This paper describes a new mapping software tool that streamlines and standardises the competency mapping process. The available analytics facilitate ongoing programme review, management, and accreditation. The complete mapping and analysis of an Australian mechanical engineering degree programme is described as a case study. Each subject is mapped by evaluating the amount and depth of competence development present. Combining subject results then enables highly detailed programme level analysis. The mapping process is designed to be administratively light, with aspects of professional development embedded in the software. The effective competence mapping described in this paper enables quantification of learning within a professional degree programme, and provides a mechanism for holistic programme improvement.

  17. Mapping the Indonesian territory, based on pollution, social demography and geographical data, using self organizing feature map

    Science.gov (United States)

    Hernawati, Kuswari; Insani, Nur; Bambang S. H., M.; Nur Hadi, W.; Sahid

    2017-08-01

    This research aims to mapping the 33 (thirty-three) provinces in Indonesia, based on the data on air, water and soil pollution, as well as social demography and geography data, into a clustered model. The method used in this study was unsupervised method that combines the basic concept of Kohonen or Self-Organizing Feature Maps (SOFM). The method is done by providing the design parameters for the model based on data related directly/ indirectly to pollution, which are the demographic and social data, pollution levels of air, water and soil, as well as the geographical situation of each province. The parameters used consists of 19 features/characteristics, including the human development index, the number of vehicles, the availability of the plant's water absorption and flood prevention, as well as geographic and demographic situation. The data used were secondary data from the Central Statistics Agency (BPS), Indonesia. The data are mapped into SOFM from a high-dimensional vector space into two-dimensional vector space according to the closeness of location in term of Euclidean distance. The resulting outputs are represented in clustered grouping. Thirty-three provinces are grouped into five clusters, where each cluster has different features/characteristics and level of pollution. The result can used to help the efforts on prevention and resolution of pollution problems on each cluster in an effective and efficient way.

  18. Modelling Multi Hazard Mapping in Semarang City Using GIS-Fuzzy Method

    Science.gov (United States)

    Nugraha, A. L.; Awaluddin, M.; Sasmito, B.

    2018-02-01

    One important aspect of disaster mitigation planning is hazard mapping. Hazard mapping can provide spatial information on the distribution of locations that are threatened by disaster. Semarang City as the capital of Central Java Province is one of the cities with high natural disaster intensity. Frequent natural disasters Semarang city is tidal flood, floods, landslides, and droughts. Therefore, Semarang City needs spatial information by doing multi hazard mapping to support disaster mitigation planning in Semarang City. Multi Hazards map modelling can be derived from parameters such as slope maps, rainfall, land use, and soil types. This modelling is done by using GIS method with scoring and overlay technique. However, the accuracy of modelling would be better if the GIS method is combined with Fuzzy Logic techniques to provide a good classification in determining disaster threats. The Fuzzy-GIS method will build a multi hazards map of Semarang city can deliver results with good accuracy and with appropriate threat class spread so as to provide disaster information for disaster mitigation planning of Semarang city. from the multi-hazard modelling using GIS-Fuzzy can be known type of membership that has a good accuracy is the type of membership Gauss with RMSE of 0.404 the smallest of the other membership and VAF value of 72.909% of the largest of the other membership.

  19. Urban local climate zone mapping and apply in urban environment study

    Science.gov (United States)

    He, Shan; Zhang, Yunwei; Zhang, Jili

    2018-02-01

    The city’s local climate zone (LCZ) was considered to be a powerful tool for urban climate mapping. But for cities in different countries and regions, the LCZ division methods and results were different, thus targeted researches should be performed. In the current work, a LCZ mapping method was proposed, which is convenient in operation and city planning oriented. In this proposed method, the local climate zoning types were adjusted firstly, according to the characteristics of Chinese city, that more tall buildings and high density. Then the classification method proposed by WUDAPT based on remote sensing data was performed on Xi’an city, as an example, for LCZ mapping. Combined with the city road network, a reasonable expression of the dividing results was provided, to adapt to the characteristics in city planning that land parcels are usually recognized as the basic unit. The proposed method was validated against the actual land use and construction data that surveyed in Xi’an, with results indicating the feasibility of the proposed method for urban LCZ mapping in China.

  20. Ningaloo Reef: Shallow Marine Habitats Mapped Using a Hyperspectral Sensor

    Science.gov (United States)

    Kobryn, Halina T.; Wouters, Kristin; Beckley, Lynnath E.; Heege, Thomas

    2013-01-01

    Research, monitoring and management of large marine protected areas require detailed and up-to-date habitat maps. Ningaloo Marine Park (including the Muiron Islands) in north-western Australia (stretching across three degrees of latitude) was mapped to 20 m depth using HyMap airborne hyperspectral imagery (125 bands) at 3.5 m resolution across the 762 km2 of reef environment between the shoreline and reef slope. The imagery was corrected for atmospheric, air-water interface and water column influences to retrieve bottom reflectance and bathymetry using the physics-based Modular Inversion and Processing System. Using field-validated, image-derived spectra from a representative range of cover types, the classification combined a semi-automated, pixel-based approach with fuzzy logic and derivative techniques. Five thematic classification levels for benthic cover (with probability maps) were generated with varying degrees of detail, ranging from a basic one with three classes (biotic, abiotic and mixed) to the most detailed with 46 classes. The latter consisted of all abiotic and biotic seabed components and hard coral growth forms in dominant or mixed states. The overall accuracy of mapping for the most detailed maps was 70% for the highest classification level. Macro-algal communities formed most of the benthic cover, while hard and soft corals represented only about 7% of the mapped area (58.6 km2). Dense tabulate coral was the largest coral mosaic type (37% of all corals) and the rest of the corals were a mix of tabulate, digitate, massive and soft corals. Our results show that for this shallow, fringing reef environment situated in the arid tropics, hyperspectral remote sensing techniques can offer an efficient and cost-effective approach to mapping and monitoring reef habitats over large, remote and inaccessible areas. PMID:23922921

  1. Facial nerve mapping and monitoring in lymphatic malformation surgery.

    Science.gov (United States)

    Chiara, Jospeh; Kinney, Greg; Slimp, Jefferson; Lee, Gi Soo; Oliaei, Sepehr; Perkins, Jonathan A

    2009-10-01

    Establish the efficacy of preoperative facial nerve mapping and continuous intraoperative EMG monitoring in protecting the facial nerve during resection of cervicofacial lymphatic malformations. Retrospective study in which patients were clinically followed for at least 6 months postoperatively, and long-term outcome was evaluated. Patient demographics, lesion characteristics (i.e., size, stage, location) were recorded. Operative notes revealed surgical techniques, findings, and complications. Preoperative, short-/long-term postoperative facial nerve function was standardized using the House-Brackmann Classification. Mapping was done prior to incision by percutaneously stimulating the facial nerve and its branches and recording the motor responses. Intraoperative monitoring and mapping were accomplished using a four-channel, free-running EMG. Neurophysiologists continuously monitored EMG responses and blindly analyzed intraoperative findings and final EMG interpretations for abnormalities. Seven patients collectively underwent 8 lymphatic malformation surgeries. Median age was 30 months (2-105 months). Lymphatic malformation diagnosis was recorded in 6/8 surgeries. Facial nerve function was House-Brackmann grade I in 8/8 cases preoperatively. Facial nerve was abnormally elongated in 1/8 cases. EMG monitoring recorded abnormal activity in 4/8 cases--two suggesting facial nerve irritation, and two with possible facial nerve damage. Transient or long-term facial nerve paresis occurred in 1/8 cases (House-Brackmann grade II). Preoperative facial nerve mapping combined with continuous intraoperative EMG and mapping is a successful method of identifying the facial nerve course and protecting it from injury during resection of cervicofacial lymphatic malformations involving the facial nerve.

  2. A Fast Approximate Algorithm for Mapping Long Reads to Large Reference Databases.

    Science.gov (United States)

    Jain, Chirag; Dilthey, Alexander; Koren, Sergey; Aluru, Srinivas; Phillippy, Adam M

    2018-04-30

    Emerging single-molecule sequencing technologies from Pacific Biosciences and Oxford Nanopore have revived interest in long-read mapping algorithms. Alignment-based seed-and-extend methods demonstrate good accuracy, but face limited scalability, while faster alignment-free methods typically trade decreased precision for efficiency. In this article, we combine a fast approximate read mapping algorithm based on minimizers with a novel MinHash identity estimation technique to achieve both scalability and precision. In contrast to prior methods, we develop a mathematical framework that defines the types of mapping targets we uncover, establish probabilistic estimates of p-value and sensitivity, and demonstrate tolerance for alignment error rates up to 20%. With this framework, our algorithm automatically adapts to different minimum length and identity requirements and provides both positional and identity estimates for each mapping reported. For mapping human PacBio reads to the hg38 reference, our method is 290 × faster than Burrows-Wheeler Aligner-MEM with a lower memory footprint and recall rate of 96%. We further demonstrate the scalability of our method by mapping noisy PacBio reads (each ≥5 kbp in length) to the complete NCBI RefSeq database containing 838 Gbp of sequence and >60,000 genomes.

  3. Improved failure prediction in forming simulations through pre-strain mapping

    Science.gov (United States)

    Upadhya, Siddharth; Staupendahl, Daniel; Heuse, Martin; Tekkaya, A. Erman

    2018-05-01

    The sensitivity of sheared edges of advanced high strength steel (AHSS) sheets to cracking during subsequent forming operations and the difficulty to predict this failure with any degree of accuracy using conventionally used FLC based failure criteria is a major problem plaguing the manufacturing industry. A possible method that allows for an accurate prediction of edge cracks is the simulation of the shearing operation and carryover of this model into a subsequent forming simulation. But even with an efficient combination of a solid element shearing operation and a shell element forming simulation, the need for a fine mesh, and the resulting high computation time makes this approach not viable from an industry point of view. The crack sensitivity of sheared edges is due to work hardening in the shear-affected zone (SAZ). A method to predict plastic strains induced by the shearing process is to measure the hardness after shearing and calculate the ultimate tensile strength as well as the flow stress. In combination with the flow curve, the relevant strain data can be obtained. To eliminate the time-intensive shearing simulation necessary to obtain the strain data in the SAZ, a new pre-strain mapping approach is proposed. The pre-strains to be mapped are, hereby, determined from hardness values obtained in the proximity of the sheared edge. To investigate the performance of this approach the ISO/TS 16630 hole expansion test was simulated with shell elements for different materials, whereby the pre-strains were mapped onto the edge of the hole. The hole expansion ratios obtained from such pre-strain mapped simulations are in close agreement with the experimental results. Furthermore, the simulations can be carried out with no increase in computation time, making this an interesting and viable solution for predicting edge failure due to shearing.

  4. Mapping Irrigation Potential in the Upper East Region of Ghana

    Science.gov (United States)

    Akomeah, E.; Odai, S. N.; Annor, F. O.; Adjei, K. A.; Barry, B.

    2009-04-01

    The Upper East Region together with the other two regions in Northern Ghana (Upper West and Northern Region) is seen as the locus of perennial food deficit (GPRS, 2003). Despite, the provision of over 200 small scale dams and various mechanisms aimed at poverty alleviation, the region is still plagued with poverty and yearly food shortages. To achieve food security and alleviate poverty in the region however, modernization of agriculture through irrigation is deemed inevitable. While it is true that considerable potential still exists for future expansion of irrigation, it cannot be refuted that water is becoming scarcer in the regions where the need for irrigation is most important, hence mapping the irrigation potential of the region will be the first step toward ensuring sound planning and sustainability of the irrigation developments. In this study, an attempt has been made to map out the irrigation potential of the Upper East Region. The river basin approach was used in assessing the irrigation potential. The catchments drained by The White Volta river, Red volta river, River Sissili and River Kulpawn were considered in the assessment. The irrigation potential for the sub basins was computed by combining information on gross irrigation water requirements for the selected cash crops, area of soil suitable for irrigation and available water resources. The capacity of 80%, 70%, 60% and 50% time of exceedance flow of the available surface water resources in the respective sub basins was estimated. The area that can be irrigated with this flow was computed with selected cropping pattern. Combining the results of the potential irrigable areas and the land use map of the respective sub basins, an irrigation potential map has been generated showing potential sites in the upper east region that can be brought under irrigation. Keywords: Irrigation potential, irrigation water requirement, land evaluation, dependable flow

  5. Effect of Misalignment between Successive Corneal Videokeratography Maps on the Repeatability of Topography Data

    Science.gov (United States)

    Bao, FangJun; Wang, JunJie; Huang, JinHai; Yu, Ye; Deng, ManLi; Li, LinNa; Yu, AYong; Wang, QinMei; Davey, Pinakin Gunvant; Elsheikh, Ahmed

    2015-01-01

    Purpose To improve the reliability of corneal topographic data through the development of a method to estimate the magnitude of misalignment between successive corneal videokeratography (VK) maps and eliminate the effect of misalignment on the repeatability of topography data. Methods Anterior and posterior topography maps were recorded twice for 124 healthy eyes of 124 participants using a Pentacam, and the repeatability of measurements was assessed by calculating the differences in elevation between each two sets of data. The repeatability of measurements was re-assessed following the determination of the magnitude of misalignment components (translational displacements: x0, y0 and z0, and rotational displacements: α, β and γ) between each two data sets and using them to modify the second data set within each pair based on an Iterative Closest Point (ICP) algorithm. The method simultaneously considered the anterior and posterior maps taken for the same eye since they were assumed to have the same set of misalignment components. A new parameter, named Combined Misalignment parameter (CM), has been developed to combine the effect of all six misalignment components on topography data and so enable study of the association between misalignment and the data repeatability test results. Results The repeatability tests resulted in average root mean square (RMS) differences in elevation data of 8.46±2.75 μm before ICP map matching when simultaneously considering anterior and posterior surfaces. With map matching and misalignment correction, the differences decreased to 7.28±2.58 μm (P = 0.00). When applied to only the anterior maps, misalignment correction led to a more pronounced reduction in elevation data differences from 4.58±1.84 μm to 2.97±1.29 μm (P = 0.00). CM was found to be associated with the repeatability error (P = 0.00), with posterior maps being responsible for most of the error due to their relatively lower accuracy compared to anterior maps

  6. Habitat Mapping and Change Assessment of Coastal Environments: An Examination of WorldView-2, QuickBird, and IKONOS Satellite Imagery and Airborne LiDAR for Mapping Barrier Island Habitats

    Directory of Open Access Journals (Sweden)

    Matthew J. McCarthy

    2014-03-01

    Full Text Available Habitat mapping can be accomplished using many techniques and types of data. There are pros and cons for each technique and dataset, therefore, the goal of this project was to investigate the capabilities of new satellite sensor technology and to assess map accuracy for a variety of image classification techniques based on hundreds of field-work sites. The study area was Masonboro Island, an undeveloped area in coastal North Carolina, USA. Using the best map results, a habitat change assessment was conducted between 2002 and 2010. WorldView-2, QuickBird, and IKONOS satellite sensors were tested using unsupervised and supervised methods using a variety of spectral band combinations. Light Detection and Ranging (LiDAR elevation and texture data pan-sharpening, and spatial filtering were also tested. In total, 200 maps were generated and results indicated that WorldView-2 was consistently more accurate than QuickBird and IKONOS. Supervised maps were more accurate than unsupervised in 80% of the maps. Pan-sharpening the images did not consistently improve map accuracy but using a majority filter generally increased map accuracy. During the relatively short eight-year period, 20% of the coastal study area changed with intertidal marsh experiencing the most change. Smaller habitat classes changed substantially as well. For example, 84% of upland scrub-shrub experienced change. These results document the dynamic nature of coastal habitats, validate the use of the relatively new Worldview-2 sensor, and may be used to guide future coastal habitat mapping.

  7. From representing to modelling knowledge: Proposing a two-step training for excellence in concept mapping

    Directory of Open Access Journals (Sweden)

    Joana G. Aguiar

    2017-09-01

    Full Text Available Training users in the concept mapping technique is critical for ensuring a high-quality concept map in terms of graphical structure and content accuracy. However, assessing excellence in concept mapping through structural and content features is a complex task. This paper proposes a two-step sequential training in concept mapping. The first step requires the fulfilment of low-order cognitive objectives (remember, understand and apply to facilitate novices’ development into good Cmappers by honing their knowledge representation skills. The second step requires the fulfilment of high-order cognitive objectives (analyse, evaluate and create to grow good Cmappers into excellent ones through the development of knowledge modelling skills. Based on Bloom’s revised taxonomy and cognitive load theory, this paper presents theoretical accounts to (1 identify the criteria distinguishing good and excellent concept maps, (2 inform instructional tasks for concept map elaboration and (3 propose a prototype for training users on concept mapping combining online and face-to-face activities. The proposed training application and the institutional certification are the next steps for the mature use of concept maps for educational as well as business purposes.

  8. Lunar Map Catalog

    Data.gov (United States)

    National Aeronautics and Space Administration — The Lunar Map Catalog includes various maps of the moon's surface, including Apollo landing sites; earthside, farside, and polar charts; photography index maps; zone...

  9. MapFactory - Towards a mapping design pattern for big geospatial data

    Science.gov (United States)

    Rautenbach, Victoria; Coetzee, Serena

    2018-05-01

    With big geospatial data emerging, cartographers and geographic information scientists have to find new ways of dealing with the volume, variety, velocity, and veracity (4Vs) of the data. This requires the development of tools that allow processing, filtering, analysing, and visualising of big data through multidisciplinary collaboration. In this paper, we present the MapFactory design pattern that will be used for the creation of different maps according to the (input) design specification for big geospatial data. The design specification is based on elements from ISO19115-1:2014 Geographic information - Metadata - Part 1: Fundamentals that would guide the design and development of the map or set of maps to be produced. The results of the exploratory research suggest that the MapFactory design pattern will help with software reuse and communication. The MapFactory design pattern will aid software developers to build the tools that are required to automate map making with big geospatial data. The resulting maps would assist cartographers and others to make sense of big geospatial data.

  10. GenMapDB: a database of mapped human BAC clones

    OpenAIRE

    Morley, Michael; Arcaro, Melissa; Burdick, Joshua; Yonescu, Raluca; Reid, Thomas; Kirsch, Ilan R.; Cheung, Vivian G.

    2001-01-01

    GenMapDB (http://genomics.med.upenn.edu/genmapdb) is a repository of human bacterial artificial chromosome (BAC) clones mapped by our laboratory to sequence-tagged site markers. Currently, GenMapDB contains over 3000 mapped clones that span 19 chromosomes, chromosomes 2, 4, 5, 9–22, X and Y. This database provides positional information about human BAC clones from the RPCI-11 human male BAC library. It also contains restriction fragment analysis data and end sequen...

  11. Mapping the Heart

    Science.gov (United States)

    Hulse, Grace

    2012-01-01

    In this article, the author describes how her fourth graders made ceramic heart maps. The impetus for this project came from reading "My Map Book" by Sara Fanelli. This book is a collection of quirky, hand-drawn and collaged maps that diagram a child's world. There are maps of her stomach, her day, her family, and her heart, among others. The…

  12. Evaluation of algorithms used to order markers on genetic maps.

    Science.gov (United States)

    Mollinari, M; Margarido, G R A; Vencovsky, R; Garcia, A A F

    2009-12-01

    When building genetic maps, it is necessary to choose from several marker ordering algorithms and criteria, and the choice is not always simple. In this study, we evaluate the efficiency of algorithms try (TRY), seriation (SER), rapid chain delineation (RCD), recombination counting and ordering (RECORD) and unidirectional growth (UG), as well as the criteria PARF (product of adjacent recombination fractions), SARF (sum of adjacent recombination fractions), SALOD (sum of adjacent LOD scores) and LHMC (likelihood through hidden Markov chains), used with the RIPPLE algorithm for error verification, in the construction of genetic linkage maps. A linkage map of a hypothetical diploid and monoecious plant species was simulated containing one linkage group and 21 markers with fixed distance of 3 cM between them. In all, 700 F(2) populations were randomly simulated with 100 and 400 individuals with different combinations of dominant and co-dominant markers, as well as 10 and 20% of missing data. The simulations showed that, in the presence of co-dominant markers only, any combination of algorithm and criteria may be used, even for a reduced population size. In the case of a smaller proportion of dominant markers, any of the algorithms and criteria (except SALOD) investigated may be used. In the presence of high proportions of dominant markers and smaller samples (around 100), the probability of repulsion linkage increases between them and, in this case, use of the algorithms TRY and SER associated to RIPPLE with criterion LHMC would provide better results.

  13. Combined effects of 1-methyl cyclopropene (1-MCP) and modified ...

    African Journals Online (AJOL)

    1-MCP-treated fruits delayed two different harvest maturity, persimmon fruits flesh firmness, and combination of 1-MCP with MAPA and MAPB reduced the ethylene production rate during storage. Treatment of 1-MCP improved storability of persimmon fruits more effectively than MAP storage. However, the results indicated ...

  14. Disaggregating and mapping crop statistics using hypertemporal remote sensing

    Science.gov (United States)

    Khan, M. R.; de Bie, C. A. J. M.; van Keulen, H.; Smaling, E. M. A.; Real, R.

    2010-02-01

    Governments compile their agricultural statistics in tabular form by administrative area, which gives no clue to the exact locations where specific crops are actually grown. Such data are poorly suited for early warning and assessment of crop production. 10-Daily satellite image time series of Andalucia, Spain, acquired since 1998 by the SPOT Vegetation Instrument in combination with reported crop area statistics were used to produce the required crop maps. Firstly, the 10-daily (1998-2006) 1-km resolution SPOT-Vegetation NDVI-images were used to stratify the study area in 45 map units through an iterative unsupervised classification process. Each unit represents an NDVI-profile showing changes in vegetation greenness over time which is assumed to relate to the types of land cover and land use present. Secondly, the areas of NDVI-units and the reported cropped areas by municipality were used to disaggregate the crop statistics. Adjusted R-squares were 98.8% for rainfed wheat, 97.5% for rainfed sunflower, and 76.5% for barley. Relating statistical data on areas cropped by municipality with the NDVI-based unit map showed that the selected crops were significantly related to specific NDVI-based map units. Other NDVI-profiles did not relate to the studied crops and represented other types of land use or land cover. The results were validated by using primary field data. These data were collected by the Spanish government from 2001 to 2005 through grid sampling within agricultural areas; each grid (block) contains three 700 m × 700 m segments. The validation showed 68%, 31% and 23% variability explained (adjusted R-squares) between the three produced maps and the thousands of segment data. Mainly variability within the delineated NDVI-units caused relatively low values; the units are internally heterogeneous. Variability between units is properly captured. The maps must accordingly be considered "small scale maps". These maps can be used to monitor crop performance of

  15. 7. Annex II: Maps

    OpenAIRE

    Aeberli, Annina

    2012-01-01

    Map 1: States of South Sudan UN OCHA (2012) Republic of South Sudan – States, as of 15 July 2012, Reliefweb http://reliefweb.int/map/south-sudan-republic/republic-south-sudan-states-15-july-2012-reference-map, accessed 31 July 2012. Map 2: Counties of South Sudan UN OCHA (2012) Republic of South Sudan – Counties, as of 16 July 2012, Reliefweb http://reliefweb.int/map/south-sudan-republic/republic-south-sudan-counties-16-july-2012-reference-map, accessed 31 July 2012. Map 3: Eastern Equato...

  16. Localization and Mapping Using a Non-Central Catadioptric Camera System

    Science.gov (United States)

    Khurana, M.; Armenakis, C.

    2018-05-01

    This work details the development of an indoor navigation and mapping system using a non-central catadioptric omnidirectional camera and its implementation for mobile applications. Omnidirectional catadioptric cameras find their use in navigation and mapping of robotic platforms, owing to their wide field of view. Having a wider field of view, or rather a potential 360° field of view, allows the system to "see and move" more freely in the navigation space. A catadioptric camera system is a low cost system which consists of a mirror and a camera. Any perspective camera can be used. A platform was constructed in order to combine the mirror and a camera to build a catadioptric system. A calibration method was developed in order to obtain the relative position and orientation between the two components so that they can be considered as one monolithic system. The mathematical model for localizing the system was determined using conditions based on the reflective properties of the mirror. The obtained platform positions were then used to map the environment using epipolar geometry. Experiments were performed to test the mathematical models and the achieved location and mapping accuracies of the system. An iterative process of positioning and mapping was applied to determine object coordinates of an indoor environment while navigating the mobile platform. Camera localization and 3D coordinates of object points obtained decimetre level accuracies.

  17. Accelerated whole-brain multi-parameter mapping using blind compressed sensing.

    Science.gov (United States)

    Bhave, Sampada; Lingala, Sajan Goud; Johnson, Casey P; Magnotta, Vincent A; Jacob, Mathews

    2016-03-01

    To introduce a blind compressed sensing (BCS) framework to accelerate multi-parameter MR mapping, and demonstrate its feasibility in high-resolution, whole-brain T1ρ and T2 mapping. BCS models the evolution of magnetization at every pixel as a sparse linear combination of bases in a dictionary. Unlike compressed sensing, the dictionary and the sparse coefficients are jointly estimated from undersampled data. Large number of non-orthogonal bases in BCS accounts for more complex signals than low rank representations. The low degree of freedom of BCS, attributed to sparse coefficients, translates to fewer artifacts at high acceleration factors (R). From 2D retrospective undersampling experiments, the mean square errors in T1ρ and T2 maps were observed to be within 0.1% up to R = 10. BCS was observed to be more robust to patient-specific motion as compared to other compressed sensing schemes and resulted in minimal degradation of parameter maps in the presence of motion. Our results suggested that BCS can provide an acceleration factor of 8 in prospective 3D imaging with reasonable reconstructions. BCS considerably reduces scan time for multiparameter mapping of the whole brain with minimal artifacts, and is more robust to motion-induced signal changes compared to current compressed sensing and principal component analysis-based techniques. © 2015 Wiley Periodicals, Inc.

  18. Open Land-Use Map: A Regional Land-Use Mapping Strategy for Incorporating OpenStreetMap with Earth Observations

    Science.gov (United States)

    Yang, D.; Fu, C. S.; Binford, M. W.

    2017-12-01

    The southeastern United States has high landscape heterogeneity, withheavily managed forestlands, highly developed agriculture lands, and multiple metropolitan areas. Human activities are transforming and altering land patterns and structures in both negative and positive manners. A land-use map for at the greater scale is a heavy computation task but is critical to most landowners, researchers, and decision makers, enabling them to make informed decisions for varying objectives. There are two major difficulties in generating the classification maps at the regional scale: the necessity of large training point sets and the expensive computation cost-in terms of both money and time-in classifier modeling. Volunteered Geographic Information (VGI) opens a new era in mapping and visualizing our world, where the platform is open for collecting valuable georeferenced information by volunteer citizens, and the data is freely available to the public. As one of the most well-known VGI initiatives, OpenStreetMap (OSM) contributes not only road network distribution, but also the potential for using this data to justify land cover and land use classifications. Google Earth Engine (GEE) is a platform designed for cloud-based mapping with a robust and fast computing power. Most large scale and national mapping approaches confuse "land cover" and "land-use", or build up the land-use database based on modeled land cover datasets. Unlike most other large-scale approaches, we distinguish and differentiate land-use from land cover. By focusing our prime objective of mapping land-use and management practices, a robust regional land-use mapping approach is developed by incorporating the OpenstreepMap dataset into Earth observation remote sensing imageries instead of the often-used land cover base maps.

  19. Determination of the attenuation map in emission tomography

    CERN Document Server

    Zaidi, H

    2002-01-01

    Reliable attenuation correction methods for quantitative emission computed tomography (ECT) require accurate delineation of the body contour and often necessitate knowledge of internal anatomical structure. Two broad classes of methods have been used to calculate the attenuation map referred to as "transmissionless" and transmission-based attenuation correction techniques. While calculated attenuation correction belonging to the first class of methods is appropriate for brain studies, more adequate methods must be performed in clinical applications where the attenuation coefficient distribution is not known a priori, and for areas of inhomogeneous attenuation such as the chest. Measured attenuation correction overcomes this problem and utilizes different approaches to determine this map including transmission scanning, segmented magnetic resonance images or appropriately scaled X-ray CT scans acquired either independently on separate or simultaneously on multimodality imaging systems. Combination of data acqu...

  20. A New Fuzzy Cognitive Map Learning Algorithm for Speech Emotion Recognition

    Directory of Open Access Journals (Sweden)

    Wei Zhang

    2017-01-01

    Full Text Available Selecting an appropriate recognition method is crucial in speech emotion recognition applications. However, the current methods do not consider the relationship between emotions. Thus, in this study, a speech emotion recognition system based on the fuzzy cognitive map (FCM approach is constructed. Moreover, a new FCM learning algorithm for speech emotion recognition is proposed. This algorithm includes the use of the pleasure-arousal-dominance emotion scale to calculate the weights between emotions and certain mathematical derivations to determine the network structure. The proposed algorithm can handle a large number of concepts, whereas a typical FCM can handle only relatively simple networks (maps. Different acoustic features, including fundamental speech features and a new spectral feature, are extracted to evaluate the performance of the proposed method. Three experiments are conducted in this paper, namely, single feature experiment, feature combination experiment, and comparison between the proposed algorithm and typical networks. All experiments are performed on TYUT2.0 and EMO-DB databases. Results of the feature combination experiments show that the recognition rates of the combination features are 10%–20% better than those of single features. The proposed FCM learning algorithm generates 5%–20% performance improvement compared with traditional classification networks.