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Sample records for cobas taqscreen mpx

  1. Evaluation of clinical sensitivity and specificity of hepatitis B virus (HBV), hepatitis C virus, and human immunodeficiency Virus-1 by cobas MPX: Detection of occult HBV infection in an HBV-endemic area.

    Science.gov (United States)

    Ha, Jihye; Park, Younhee; Kim, Hyon-Suk

    2017-11-01

    Transfusion-transmitted infectious diseases remain a major concern for blood safety, particularly with hepatitis B virus (HBV), hepatitis C virus (HCV), and human immunodeficiency virus (HIV). Nucleic acid testing (NAT) in donor screening shortens the serologically negative window period and reduces virus transmission. The cobas MPX (Roche Molecular Systems, Inc., Branchburg, New Jersey) is a recently developed multiplex qualitative PCR system that enables the simultaneous detection of HBV, HCV, and HIV with improved sensitivity and throughput using cobas 6800 and 8800 instruments. The aim of this study was to conduct an evaluation of the clinical sensitivity and specificity of cobas MPX detection of HBV, HCV, and HIV in clinical specimens. Among samples referred for HBV, HCV, and HIV-1 quantification at Severance Hospital, Yonsei University College of Medicine, positive samples were selected to evaluate sensitivity. A total of 843 samples was tested using both cobas MPX and COBAS AmpliPrep/COBAS TaqMan Tests for HBV, HCV, and HIV-1 using the cobas 8800 system and a COBAS TaqMan 96 analyzer, respectively. Samples that showed discrepancies were confirmed by nested PCR. The cobas MPX achieved excellent sensitivity and specificity for the detection of HBV, HCV, and HIV-1 in clinical samples. We found that the lower limit of detection (LOD) of blood screening by NAT actually improves clinical sensitivity, and occult HBV infection prevalence among healthy employees of the hospital was rather high. Copyright © 2017 Elsevier B.V. All rights reserved.

  2. MPX detectors as LHC luminosity monitor

    Energy Technology Data Exchange (ETDEWEB)

    Sopczak, Andre; Ali, Babar; Bergmann, Benedikt; Caforio, Davide; Heijne, Erik; Pospisil, Stanislav; Seifert, Frank; Solc, Jaroslav; Suk, Michal; Turecek, Daniel [IEAP CTU in Prague (Czech Republic); Ashba, Nedaa; Leroy, Claude; Soueid, Paul [University of Montreal (Canada); Bekhouche, Khaled [Biskra University (Algeria); Campbell, Michael; Nessi, Marzio [CERN (Switzerland); Lipniacka, Anna [Bergen University (Norway)

    2016-07-01

    A network of 16 Medipix-2 (MPX) silicon pixel devices was installed in the ATLAS detector cavern at CERN. It was designed to measure the composition and spectral characteristics of the radiation field in the ATLAS experiment and its surroundings. This study demonstrates that the MPX network can also be used as a self-sufficient luminosity monitoring system. The MPX detectors collect data independently of the ATLAS data-recording chain, and thus they provide independent measurements of the bunch-integrated ATLAS/LHC luminosity. In particular, the MPX detectors located close enough to the primary interaction point are used to perform van der Meer calibration scans with high precision. Results from the luminosity monitoring are presented for 2012 data taken at √(s) =8 TeV proton-proton collisions. The characteristics of the LHC luminosity reduction rate are studied and the effects of beam-beam (burn-off) and beam-gas (single bunch) interactions are evaluated. The systematic variations observed in the MPX luminosity measurements are below 0.3% for one minute intervals.

  3. MPX Detectors as LHC Luminosity Monitor

    CERN Document Server

    Sopczak, Andre; Asbah, Nedaa; Bergmann, Benedikt; Bekhouche, Khaled; Caforio, Davide; Campbell, Michael; Heijne, Erik; Leroy, Claude; Lipniacka, Anna; Nessi, Marzio; Pospisil, Stanislav; Seifert, Frank; Solc, Jaroslav; Soueid, Paul; Suk, Michal; Turecek, Daniel; Vykydal, Zdenek

    2015-01-01

    A network of 16 Medipix-2 (MPX) silicon pixel devices was installed in the ATLAS detector cavern at CERN. It was designed to measure the composition and spectral characteristics of the radiation field in the ATLAS experiment and its surroundings. This study demonstrates that the MPX network can also be used as a self-sufficient luminosity monitoring system. The MPX detectors collect data independently of the ATLAS data-recording chain, and thus they provide independent measurements of the bunch-integrated ATLAS/LHC luminosity. In particular, the MPX detectors located close enough to the primary interaction point are used to perform van der Meer calibration scans with high precision. Results from the luminosity monitoring are presented for 2012 data taken at sqrt(s) = 8 TeV proton-proton collisions. The characteristics of the LHC luminosity reduction rate are studied and the effects of beam-beam (burn-off) and beam-gas (single bunch) interactions are evaluated. The systematic variations observed in the MPX lum...

  4. Luminosity Monitoring in ATLAS with MPX Detectors

    CERN Document Server

    AUTHOR|(CDS)2086061

    2013-01-01

    The ATLAS-MPX detectors are based on the Medipix2 silicon devices designed by CERN for the detection of multiple types of radiation. Sixteen such detectors were successfully operated in the ATLAS detector at the LHC and collected data independently of the ATLAS data-recording chain from 2008 to 2013. Each ATLAS-MPX detector provides separate measurements of the bunch-integrated LHC luminosity. An internal consistency for luminosity monitoring of about 2% was demonstrated. In addition, the MPX devices close to the beam are sensitive enough to provide relative-luminosity measurements during van der Meer calibration scans, in a low-luminosity regime that lies below the sensitivity of the ATLAS calorimeter-based bunch-integrating luminometers. Preliminary results from these luminosity studies are presented for 2012 data taken at $\\sqrt{s}=8$ TeV proton-proton collisions.

  5. Detection and identification of occult HBV in blood donors in Taiwan using a commercial, multiplex, multi-dye nucleic acid amplification technology screening test.

    Science.gov (United States)

    Lin, K T; Chang, C L; Tsai, M H; Lin, K S; Saldanha, J; Hung, C M

    2014-02-01

    The ability of a new generation commercial, multiplex, multi-dye test from Roche, the cobas TaqScreen MPX test, version 2.0, to detect and identify occult HBV infections was evaluated using routine donor samples from Kaohsiung Blood Bank, Taiwan. A total of 5973 samples were tested by nucleic acid amplification technology (NAT); 5898 in pools of six, 66 in pools of less than six and nine samples individually. NAT-reactive samples were retested with alternative NAT tests, and follow-up samples from the donors were tested individually by NAT and for all the HBV serological markers. Eight NAT-only-reactive donors were identified, and follow-up samples were obtained from six of the donors. The results indicated that all eight donors had an occult HBV infection with viral loads <12 IU/ml. The cobas(®) TaqScreen MPX test, version 2.0, has an advantage over the current Roche blood screening test, the cobas TaqScreen MPX test, for screening donations in countries with a high prevalence of occult HBV infections since the uncertainty associated with identifying samples with very low viremia is removed by the ability of the test to identify the viral target in samples that are reactive with the cobas TaqScreen MPX test, version 2.0. © 2013 International Society of Blood Transfusion.

  6. Precision of MPX detectors as LHC luminosity monitor

    Energy Technology Data Exchange (ETDEWEB)

    Sopczak, Andre; Ali, Babar; Benes, Petr; Bergmann, Benedikt; Biskup, Bartolomej; Caforio, Davide; Heijne, Erik; Pospisil, Stanislav; Seifert, Frank; Solc, Jaroslav; Suk, Michal; Turecek, Daniel; Vykydal, Zdenek [IEAP CTU in Prague (Czech Republic); Asbah, Nedaa; Leroy, Claude; Soueid, Paul [University of Montreal (Canada); Campbell, Michael; Nessi, Marzio [CERN (Switzerland); Kladiva, Edward [IEP SAS Kosice (Slovakia)

    2015-07-01

    A network consisting of MPX detectors based on Medipix2 silicon pixel devices were originally adapted for measuring the composition and spectral characteristics of the radiation field in the ATLAS experiment and its surroundings. We demonstrate that the MPX network, which consists of 16 MPX detectors, is a self-contained luminosity monitor system. As the MPX detectors are collecting data independently of the ATLAS data-recording chain, they provide independent measurements of the bunch-integrated ATLAS/LHC luminosity. In particular, the MPX detectors close enough to the primary interaction point are used to perform van der Meer calibration scans with good precision. Results from the luminosity monitoring are presented for 2012 data taken at √(s)=8 TeV proton-proton collisions. The characteristics of the LHC luminosity reduction are studied and the effects of beam-beam (burn-off) and beam-gas (single bunch) interactions are evaluated. The variations of the MPX luminosity measurements around the fitted curve lead to a relative uncertainty on the luminosity measurement below 0.3% for one minute time intervals.

  7. Remote control of ATLAS-MPX Network and Data Visualization

    International Nuclear Information System (INIS)

    Turecek, D.; Holy, T.; Pospisil, S.; Vykydal, Z.

    2011-01-01

    The ATLAS-MPX Network is a network of 15 Medipix2-based detector devices, installed in various positions in the ATLAS detector at CERN, Geneva. The aim of the network is to perform a real-time measurement of the spectral characteristics and the composition of radiation inside the ATLAS detector during its operation. The remote control system of ATLAS-MPX controls and configures all the devices from one place, via a web interface, accessible from different operating systems. The Data Visualization application, also with a web interface, has been developed in order to present measured data to the scientific community. It allows to browse through recorded frames from all devices and to search for specific frames by date and time. Charts containing the number of different types of tracks in each frame as a function of time may be rendered from the database.

  8. Performance evaluation of cobas HBV real-time PCR assay on Roche cobas 4800 System in comparison with COBAS AmpliPrep/COBAS TaqMan HBV Test.

    Science.gov (United States)

    Kim, Hanah; Hur, Mina; Bae, Eunsin; Lee, Kyung-A; Lee, Woo-In

    2018-02-19

    Hepatitis B virus (HBV) nucleic acid amplification testing (NAAT) is important for the diagnosis and management of HBV infection. We evaluated the analytical performance of the cobas HBV NAAT (Roche Diagnostics GmbH, Mannheim, Germany) on the cobas 4800 System in comparison with COBAS AmpliPrep/COBAS TaqMan HBV Test (CAP/CTM HBV). Precision was evaluated using three levels of cobas HBV/HCV/HIV-1 Control Kit, and linearity was evaluated across the anticipated measuring range (10.0-1.0×109 IU/mL) at seven levels using clinical samples. Detection capability, including limit of blank (LOB), limit of detection (LOD) and limit of quantitation (LOQ), was verified using the 4th WHO International Standard for HBV DNA for NAT (NIBSC code: 10/266). Correlation between the two systems was compared using 205 clinical samples (102 sera and 103 EDTA plasma). Repeatability and total imprecision (coefficient of variation) ranged from 0.5% to 3.8% and from 0.5% to 3.5%, respectively. Linearity (coefficient of determination, R2) was 0.999. LOB, LOD and LOQ were all acceptable within the observed proportion rate (85%). Correlation was very high between the two systems in both serum and plasma samples (correlation coefficient [r]=0.995). The new cobas HBV real-time PCR assay on the cobas 4800 System showed reliable analytical performances.

  9. Estimate of the neutron fields in ATLAS based on ATLAS-MPX detectors data

    Energy Technology Data Exchange (ETDEWEB)

    Bouchami, J; Dallaire, F; Gutierrez, A; Idarraga, J; Leroy, C; Picard, S; Scallon, O [Universite de Montreal, Montreal, Quebec H3C 3J7 (Canada); Kral, V; PospIsil, S; Solc, J; Suk, M; Turecek, D; Vykydal, Z; Zemlieka, J, E-mail: scallon@lps.umontreal.ca [Institute of Experimental and Applied Physics of the CTU in Prague, Horska 3a/22, CZ-12800 Praha2 - Albertov (Czech Republic)

    2011-01-15

    The ATLAS-MPX detectors are based on Medipix2 silicon devices designed by CERN for the detection of different types of radiation. These detectors are covered with converting layers of {sup 6}LiF and polyethylene (PE) to increase their sensitivity to thermal and fast neutrons, respectively. These devices allow the measurement of the composition and spectroscopic characteristics of the radiation field in ATLAS, particularly of neutrons. These detectors can operate in low or high preset energy threshold mode. The signature of particles interacting in a ATLAS-MPX detector at low threshold are clusters of adjacent pixels with different size and form depending on their type, energy and incidence angle. The classification of particles into different categories can be done using the geometrical parameters of these clusters. The Medipix analysis framework (MAFalda) - based on the ROOT application - allows the recognition of particle tracks left in ATLAS-MPX devices located at various positions in the ATLAS detector and cavern. The pattern recognition obtained from the application of MAFalda was configured to distinguish the response of neutrons from other radiation. The neutron response at low threshold is characterized by clusters of adjoining pixels (heavy tracks and heavy blobs) left by protons and heavy ions resulting from neutron interactions in the converting layers of the ATLAS-MPX devices. The neutron detection efficiency of ATLAS-MPX devices has been determined by the exposure of two detectors of reference to radionuclide sources of neutrons ({sup 252}Cf and {sup 241}AmBe). With these results, an estimate of the neutrons fields produced at the devices locations during ATLAS operation was done.

  10. Estimate of the neutron fields in ATLAS based on ATLAS-MPX detectors data

    International Nuclear Information System (INIS)

    Bouchami, J; Dallaire, F; Gutierrez, A; Idarraga, J; Leroy, C; Picard, S; Scallon, O; Kral, V; PospIsil, S; Solc, J; Suk, M; Turecek, D; Vykydal, Z; Zemlieka, J

    2011-01-01

    The ATLAS-MPX detectors are based on Medipix2 silicon devices designed by CERN for the detection of different types of radiation. These detectors are covered with converting layers of 6 LiF and polyethylene (PE) to increase their sensitivity to thermal and fast neutrons, respectively. These devices allow the measurement of the composition and spectroscopic characteristics of the radiation field in ATLAS, particularly of neutrons. These detectors can operate in low or high preset energy threshold mode. The signature of particles interacting in a ATLAS-MPX detector at low threshold are clusters of adjacent pixels with different size and form depending on their type, energy and incidence angle. The classification of particles into different categories can be done using the geometrical parameters of these clusters. The Medipix analysis framework (MAFalda) - based on the ROOT application - allows the recognition of particle tracks left in ATLAS-MPX devices located at various positions in the ATLAS detector and cavern. The pattern recognition obtained from the application of MAFalda was configured to distinguish the response of neutrons from other radiation. The neutron response at low threshold is characterized by clusters of adjoining pixels (heavy tracks and heavy blobs) left by protons and heavy ions resulting from neutron interactions in the converting layers of the ATLAS-MPX devices. The neutron detection efficiency of ATLAS-MPX devices has been determined by the exposure of two detectors of reference to radionuclide sources of neutrons ( 252 Cf and 241 AmBe). With these results, an estimate of the neutrons fields produced at the devices locations during ATLAS operation was done.

  11. Estimate of the neutron fields in ATLAS based on ATLAS-MPX detectors data

    Science.gov (United States)

    Bouchami, J.; Dallaire, F.; Gutiérrez, A.; Idarraga, J.; Král, V.; Leroy, C.; Picard, S.; Pospíšil, S.; Scallon, O.; Solc, J.; Suk, M.; Turecek, D.; Vykydal, Z.; Žemlièka, J.

    2011-01-01

    The ATLAS-MPX detectors are based on Medipix2 silicon devices designed by CERN for the detection of different types of radiation. These detectors are covered with converting layers of 6LiF and polyethylene (PE) to increase their sensitivity to thermal and fast neutrons, respectively. These devices allow the measurement of the composition and spectroscopic characteristics of the radiation field in ATLAS, particularly of neutrons. These detectors can operate in low or high preset energy threshold mode. The signature of particles interacting in a ATLAS-MPX detector at low threshold are clusters of adjacent pixels with different size and form depending on their type, energy and incidence angle. The classification of particles into different categories can be done using the geometrical parameters of these clusters. The Medipix analysis framework (MAFalda) — based on the ROOT application — allows the recognition of particle tracks left in ATLAS-MPX devices located at various positions in the ATLAS detector and cavern. The pattern recognition obtained from the application of MAFalda was configured to distinguish the response of neutrons from other radiation. The neutron response at low threshold is characterized by clusters of adjoining pixels (heavy tracks and heavy blobs) left by protons and heavy ions resulting from neutron interactions in the converting layers of the ATLAS-MPX devices. The neutron detection efficiency of ATLAS-MPX devices has been determined by the exposure of two detectors of reference to radionuclide sources of neutrons (252Cf and 241AmBe). With these results, an estimate of the neutrons fields produced at the devices locations during ATLAS operation was done.

  12. Dismantling of Irradiation Facility Selfshielded of Investigation Model MPX- γ-25M

    International Nuclear Information System (INIS)

    Soguero, D.; Rapado, M.; Prieto, E.; Desdin, L.; Guerra, M.; Castillo, J.

    2011-01-01

    In this paper is described the dismantling a category I selfshielded gamma irradiation facility model MPX - γ - 25M. The following specific objectives were established: a) identify aspects of the insurance contract, human and technical resources b) assess the radiological situation of the process and c) analyze potential radiological extraordinary events in each step of the process, ensuring appropriate responses, based on an evaluation of process safety. The assessment of radiological events can serve as a reference for addressing the process of dismantling other similar irradiators. (Author)

  13. Decommissioning of an Irradiator MPX-γ - 25M and a neutron Irradiator

    International Nuclear Information System (INIS)

    Soguero, Dania; Guerra, Mercedes; Prieto, Enrique; Desdin, Luis

    2013-01-01

    In this paper a technology is developed with its procedures in radiation protection to ensure the safety of the process of decommissioning of two irradiators. Both processes are described, the process of decommissioning of a neutron Irradiator 4. 44·10 11 Bq, employed in the vegetal radio mutagenesis, and disassembling of an installation of gamma irradiation of 3.33 * 10 12 Bq, self-shielded of category I, model MPX - γ - 25 M. The specific objectives are: a) identify aspects of the contractual assurance, of human and technical resources, b) to evaluate the radiological situation of the process and c) analyze the potential radiological extraordinary events in each of the steps of the process, ensuring the right answers. Evaluation of radiological successful events described can be considered as reference to address the process of disassembling of other similar irradiators

  14. Impact of the COBAS AmpliPrep/COBAS AMPLICOR HIV-1 MONITOR Test, Version 1.5, on Clinical Laboratory Operations▿

    Science.gov (United States)

    Germer, Jeffrey J.; Bendel, Jordan L.; Dolenc, Craig A.; Nelson, Sarah R.; Masters, Amanda L.; Gerads, Tara M.; Mandrekar, Jayawant N.; Mitchell, P. Shawn; Yao, Joseph D. C.

    2007-01-01

    The COBAS AmpliPrep/COBAS AMPLICOR HIV-1 MONITOR Test, version 1.5 (CAP/CA), and the COBAS AMPLICOR HIV-1 MONITOR Test, version 1.5, were compared. CAP/CA reduced and consolidated labor while modestly increasing assay throughput without increased failure rates or direct costs, regardless of batch size and assay format. PMID:17634308

  15. Routine screening of blood donations at Qingdao central blood bank, China, for hepatitis B virus (HBV) DNA with a real-time, multiplex nucleic acid test for HBV, hepatitis C virus, and human immunodeficiency virus Types 1 and 2.

    Science.gov (United States)

    Yang, Zhongsi; Xu, Lei; Liu, Li; Feng, Qiuxia; Zhang, Longmu; Ma, Weijuan; Saldanha, John; Wang, Mingmin; Zhao, Lin

    2013-10-01

    The Roche cobas TaqScreen MPX test was used to evaluate the rate of hepatitis B surface antigen (HBsAg)-negative donations that were hepatitis B virus (HBV) DNA reactive from June 2010 to January 2011 in Qingdao, China. HBsAg-negative samples from 65,800 voluntary blood donors were tested with the cobas TaqScreen MPX test in pools of 6 on the Roche cobas s 201 blood screening platform. Samples positive for HBV DNA and negative for HBsAg were quantitated with the Roche COBAS AmpliPrep/COBAS TaqMan HBV test. In addition, serologic tests for HBsAg, hepatitis B surface antibody, anti-hepatitis B core antigen (anti-HBc), anti-hepatitis B e antigen (anti-HBe), and hepatitis B e antigen (HBe) were done using the Roche electrochemiluminescence immunoassay. A total of 80 nucleic acid amplification technology (NAT) test-reactive pools were identified and 59 pools (74%) resolved to a reactive sample. All samples were HBV DNA reactive and the viral load in each sample was quantitated. The viral loads of the samples ranged from less than 20 to 34,600 IU/mL; 13 samples (22%) had viral loads of more than 20 IU/mL, 27 samples (45.8%) had viral loads of less than 20 IU/mL, and 19 samples (32.2%) had undetectable viral loads. Of the 59 NAT-reactive samples, 40 (67.8%) were anti-HBc positive. Fifteen of the 59 samples could not be confirmed as NAT reactive either by an alternative NAT test or by serology. The HBV NAT yield in blood donors in Qingdao is 0.06% (38/65,800). This study confirmed the value of NAT for interdicting HBV-positive donations and preventing transfusion-transmitted HBV infections. © 2013 American Association of Blood Banks.

  16. Evaluation of NGAL TestTM on Cobas 6000

    DEFF Research Database (Denmark)

    Hansen, Young B L; Damgaard, Anette; Poulsen, Jørgen H

    2014-01-01

    BACKGROUND: Neutrophil Gelatinase-Associated Lipocalin (NGAL) is a promising biomarker for acute kidney injury (AKI). Our objectives were to evaluate the NGAL Test(TM) from Bioporto for both urine NGAL and plasma NGAL on the Cobas 6000 c501 (Roche Diagnostics, Rotkreuz, Switzerland) with matched...... measurements run on Hitachi 917, the method's linearity on the Cobas 6000 in urine, EDTA and Lithium-Heparin (Li-Hep), the influence of using EDTA or Li-Hep tubes and, finally, the impact of freezing and thawing on the sample. METHODS: Forty matched samples of Li-Hep and EDTA plasma and 40 urine samples were...

  17. Performance evaluation of the new Roche cobas AmpliPrep/cobas TaqMan HCV test, version 2.0, for detection and quantification of hepatitis C virus RNA

    NARCIS (Netherlands)

    S.D. Pas (Suzan); R. Molenkamp (Richard); J. Schinkel (Janke); S. Rebers; C. Copra (Cederick); S. Seven-Deniz; D. Thamke (Diana); R.J. de Knegt (Robert); B.L. Haagmans (Bart); M. Schutten (Martin)

    2013-01-01

    textabstractTo evaluate the analytical performance and explore the clinical applicability of the new Roche cobas AmpliPrep/cobas TaqMan HCV test, v2.0 (CAP/CTM v2.0), a platform comparison was performed on panels and diagnostic samples with the Roche cobas AmpliPrep/cobas TaqMan HCV test (CAP/CTM

  18. Performance of the cobas Hepatitis B virus (HBV) test using the cobas 4800 system and comparison of HBV DNA quantification ability between the COBAS AmpliPrep/COBAS TaqMan HBV test version 2.0 and cobas HBV test.

    Science.gov (United States)

    Shin, Kyung-Hwa; Lee, Hyun-Ji; Chang, Chulhun L; Kim, Hyung-Hoi

    2018-04-01

    Hepatitis B virus (HBV) DNA levels are used to predict the response to therapy, determine therapy initiation, monitor resistance to therapy, and establish treatment success. To verify the performance of the cobas HBV test using the cobas 4800 system for HBV DNA quantification and to compare the HBV DNA quantification ability between the cobas HBV test and COBAS AmpliPrep/COBAS TaqMan HBV version 2.0 (CAP/CTM v2.0). The precision, linearity, and limit of detection of the cobas HBV test were evaluated using the 4th World Health Organization International Standard material and plasma samples. Clinical samples that yielded quantitative results using the CAP/CTM v2.0 and cobas HBV tests were subjected to correlational analysis. Three hundred forty-nine samples were subjected to correlational analysis, among which 114 samples showed results above the lower limit of quantification. Comparable results were obtained ([cobas HBV test] = 1.038 × [CAP/CTM v2.0]-0.173, r = 0.914) in 114 samples, which yielded values above the lower limit of quantification. The results for 86.8% of the samples obtained using the cobas HBV test were within 0.5 log 10 IU/mL of the CAP/CTM v2.0 results. The total precision values against the low and high positive controls were 1.4% (mean level: 2.25 log 10 IU/mL) and 3.2% (mean level: 6.23 log 10 IU/mL), respectively. The cobas HBV test demonstrated linearity (1.15-6.75 log 10 IU/mL, y = 0.95 × 6 + 0.17, r 2  = 0.994). The cobas HBV test showed good correlation with CAP/CTM v2.0, and had good precision and an acceptable limit of detection. The cobas HBV test using the cobas 4800 is a reliable method for quantifying HBV DNA levels in the clinical setting. Copyright © 2018. Published by Elsevier B.V.

  19. Mesure des champs de radiation dans le detecteur ATLAS et sa caverne avec les detecteurs au silicium a pixels ATLAS-MPX

    Science.gov (United States)

    Bouchami, Jihene

    The LHC proton-proton collisions create a hard radiation environment in the ATLAS detector. In order to quantify the effects of this environment on the detector performance and human safety, several Monte Carlo simulations have been performed. However, direct measurement is indispensable to monitor radiation levels in ATLAS and also to verify the simulation predictions. For this purpose, sixteen ATLAS-MPX devices have been installed at various positions in the ATLAS experimental and technical areas. They are composed of a pixelated silicon detector called MPX whose active surface is partially covered with converter layers for the detection of thermal, slow and fast neutrons. The ATLAS-MPX devices perform real-time measurement of radiation fields by recording the detected particle tracks as raster images. The analysis of the acquired images allows the identification of the detected particle types by the shapes of their tracks. For this aim, a pattern recognition software called MAFalda has been conceived. Since the tracks of strongly ionizing particles are influenced by charge sharing between adjacent pixels, a semi-empirical model describing this effect has been developed. Using this model, the energy of strongly ionizing particles can be estimated from the size of their tracks. The converter layers covering each ATLAS-MPX device form six different regions. The efficiency of each region to detect thermal, slow and fast neutrons has been determined by calibration measurements with known sources. The study of the ATLAS-MPX devices response to the radiation produced by proton-proton collisions at a center of mass energy of 7 TeV has demonstrated that the number of recorded tracks is proportional to the LHC luminosity. This result allows the ATLAS-MPX devices to be employed as luminosity monitors. To perform an absolute luminosity measurement and calibration with these devices, the van der Meer method based on the LHC beam parameters has been proposed. Since the ATLAS-MPX

  20. Decommissioning of an Irradiator MPX-{gamma} - 25M and a neutron Irradiator; Desmantelamiento de un irradiador tipo MPX-{gamma}-25M y de un irradiador de neutrones

    Energy Technology Data Exchange (ETDEWEB)

    Soguero, Dania; Guerra, Mercedes; Prieto, Enrique; Desdin, Luis, E-mail: sdania@ceaden.edu.cu [Centro de Aplicaciones Tecnologica y Desarrollo Nuclear (CEADEN), La Habana (Cuba)

    2013-07-01

    In this paper a technology is developed with its procedures in radiation protection to ensure the safety of the process of decommissioning of two irradiators. Both processes are described, the process of decommissioning of a neutron Irradiator 4. 44{center_dot}10{sup 11}Bq, employed in the vegetal radio mutagenesis, and disassembling of an installation of gamma irradiation of 3.33 * 10{sup 12} Bq, self-shielded of category I, model MPX - {gamma} - 25 M. The specific objectives are: a) identify aspects of the contractual assurance, of human and technical resources, b) to evaluate the radiological situation of the process and c) analyze the potential radiological extraordinary events in each of the steps of the process, ensuring the right answers. Evaluation of radiological successful events described can be considered as reference to address the process of disassembling of other similar irradiators.

  1. Body fluid matrix evaluation on a Roche cobas 8000 system.

    Science.gov (United States)

    Owen, William E; Thatcher, Mindy L; Crabtree, Karolyn J; Greer, Ryan W; Strathmann, Frederick G; Straseski, Joely A; Genzen, Jonathan R

    2015-09-01

    Chemical analysis of body fluids is commonly requested by physicians. Because most commercial FDA-cleared clinical laboratory assays are not validated by diagnostic manufacturers for "non-serum" and "non-plasma" specimens, laboratories may need to complete additional validation studies to comply with regulatory requirements regarding body fluid testing. The objective of this report is to perform recovery studies to evaluate potential body fluid matrix interferences for commonly requested chemistry analytes. Using an IRB-approved protocol, previously collected clinical body fluid specimens (biliary/hepatic, cerebrospinal, dialysate, drain, pancreatic, pericardial, peritoneal, pleural, synovial, and vitreous) were de-identified and frozen (-20°C) until experiments were performed. Recovery studies (spiking with high concentration serum, control, and/or calibrator) were conducted using 10% spiking solution by volume; n=5 specimens per analyte/body fluid investigated. Specimens were tested on a Roche cobas 8000 system (c502, c702, e602, and ISE modules). In all 80 analyte/body fluid combinations investigated (including amylase, total bilirubin, urea nitrogen, carbohydrate antigen 19-9, carcinoembryonic antigen, cholesterol, chloride, creatinine, glucose, potassium, lactate dehydrogenase, lipase, rheumatoid factor, sodium, total protein, triglycerides, and uric acid), the average percent recovery was within predefined acceptable limits (less than ±10% from the calculated ideal recovery). The present study provides evidence against the presence of any systematic matrix interference in the analyte/body fluid combinations investigated on the Roche cobas 8000 system. Such findings support the utility of ongoing body fluid validation initiatives conducted to maintain compliance with regulatory requirements. Copyright © 2015 The Canadian Society of Clinical Chemists. Published by Elsevier Inc. All rights reserved.

  2. Results of the Abbott RealTime HIV-1 Assay for Specimens Yielding “Target Not Detected” Results by the Cobas AmpliPrep/Cobas TaqMan HIV-1 Test▿

    OpenAIRE

    Babady, N. Esther; Germer, Jeffrey J.; Yao, Joseph D. C.

    2009-01-01

    No significantly discordant results were observed between the Abbott RealTime HIV-1 assay and the COBAS AmpliPrep/COBAS TaqMan HIV-1 Test (CTM) among 1,190 unique clinical plasma specimens obtained from laboratories located in 40 states representing all nine U.S. geographic regions and previously yielding “target not detected” results by CTM.

  3. Results of the Abbott RealTime HIV-1 assay for specimens yielding "target not detected" results by the Cobas AmpliPrep/Cobas TaqMan HIV-1 Test.

    Science.gov (United States)

    Babady, N Esther; Germer, Jeffrey J; Yao, Joseph D C

    2010-03-01

    No significantly discordant results were observed between the Abbott RealTime HIV-1 assay and the COBAS AmpliPrep/COBAS TaqMan HIV-1 Test (CTM) among 1,190 unique clinical plasma specimens obtained from laboratories located in 40 states representing all nine U.S. geographic regions and previously yielding "target not detected" results by CTM.

  4. NT-proBNP on Cobas h 232 in point-of-care testing

    DEFF Research Database (Denmark)

    Gils, Charlotte; Ramanathan, R.; Breindahl, T.

    2015-01-01

    Background. NT-proBNP may be useful for ruling out heart failure in primary health care. In this study we examined the analytical quality of NT-proBNP in primary health care on the Cobas h 232 point-of-care instrument compared with measurements performed in a hospital laboratory. Materials...... and methods. Blood samples requested for NT-proBNP were collected in primary health care (n = 95) and in a hospital laboratory (n = 107). NT-proBNP was measured on-site on Cobas h 232 instruments both in primary health care centres and at the hospital laboratory and all samples were also analyzed...... with a comparison method at the hospital. Precision, trueness, accuracy, and lot-variation were determined at different concentration levels and evaluated according to acceptance criteria. Furthermore user-friendliness was assessed by questionnaires. Results. For Cobas h 232 repeatability CV was 8...

  5. Lab-in-a-tube: Real-time molecular point-of-care diagnostics for influenza A and B using the cobas(R) Liat(R) system

    NARCIS (Netherlands)

    Melchers, W.J.G.; Kuijpers, J; Sickler, J.J.; Rahamat-Langendoen, J.C.

    2017-01-01

    Rapid diagnosis of influenza A and B is important for direct treatment decisions in patient care and for the reduction of in-hospital transmissions. The new real-time PCR based molecular point-of-care (POC) assay, the cobas(R) Influenza A/B test on the cobas(R) Liat(R) System (cobas(R) Liat(R)

  6. Analytical performances of the Diazyme ADA assay on the Cobas® 6000 system.

    Science.gov (United States)

    Delacour, Hervé; Sauvanet, Christophe; Ceppa, Franck; Burnat, Pascal

    2010-12-01

    To evaluate the analytical performance of the Diazyme ADA assay on the Cobas® 6000 system for pleural fluid samples analysis. Imprecision, linearity, calibration curve stability, interference, and correlation studies were completed. The Diazyme ADA assay demonstrated excellent precision (CVADA assay correlated well with the Giusti method (r(2)=0.93) but exhibited a negative bias (~ -30%). The Diazyme ADA assay on the Cobas® 6000 system represents a rapid, accurate, precise and reliable method for determination of ADA activity in pleural fluid samples. Copyright © 2010 The Canadian Society of Clinical Chemists. Published by Elsevier Inc. All rights reserved.

  7. Comparison of the cobas Human Papillomavirus (HPV) Test with the Hybrid Capture 2 and Linear Array HPV DNA Tests

    Science.gov (United States)

    Sadorra, Mark; LaMere, Brandon J.; Kail, Randi; Aldrich, Carrie; Kinney, Walter; Fetterman, Barbara; Lorey, Thomas; Schiffman, Mark; Castle, Philip E.

    2012-01-01

    The cobas human papillomavirus (HPV) test (cobas) was recently approved by the U.S. Food and Drug Administration (FDA) and identifies HPV16 and HPV18 separately as well as detecting a pool of 11 HR-HPV genotypes (HPV31, -33, -35, -39, -45, -51, -52, -56, -58, -59, -68) and also HPV66. We compared cobas, Linear Array (LA), and Hybrid Capture 2 (HC2) assays for detection of carcinogenic HPV DNA, and cobas and LA for detection of HPV16 and HPV18 DNA, among the first 1,852 women enrolled in the HPV Persistence and Progression Cohort (PaP Cohort) study. Specimens were tested by all 3 assays 1 year after an HC2-positive result. In 1,824 specimens with cobas results, cobas had an 85.9% agreement with HC2 and 91.0% agreement with LA for carcinogenic HPV detection. When results between cobas and HC2 disagreed, cobas tended to call more women HPV positive (P < 0.01). Categorizing cobas and LA results hierarchically according to cancer risk (HPV16, HPV18, other carcinogenic HPV genotypes, or carcinogen negative), there was a 90% agreement for all categories of HPV (n = 1,824). We found good agreement between the two U.S. FDA-approved HPV tests, with discrepancies between the two assays due to specific characteristics of the individual assays. Additional studies are needed to compare HC2 and cobas for detecting and predicting CIN3 to understand the clinical implications of the discrepant test results between the two tests. PMID:22075592

  8. Usefulness of nucleic acid testing to reduce risk of hepatitis B virus transfusion-transmitted infection in Argentina: high rate of recent infections.

    Science.gov (United States)

    Blanco, Sebastián; Balangero, Marcos César; Valle, Mildre Cledy; Montini, Oscar Luis; Carrizo, Luis Horacio; Gallego, Sandra Verónica

    2017-03-01

    Results from 10-year experience using nucleic acid test (NAT) screening in a blood bank of Córdoba are presented, showing the first data on prevalence of recent hepatitis B virus (HBV) infections and occult HBV infections (OBIs) in Argentina. Molecular screening was performed by COBAS AmpliScreen human immunodeficiency virus Type 1 (HIV-1) test Version 1.5 and COBAS AmpliScreen hepatitis C virus (HCV) test Version 2.0 and COBAS TaqScreen MPX and MPX Version 2.0 test (Roche Molecular Systems). To characterize OBI, additional molecular and serologic assays were performed. As results of NAT, 0.075% of the donors (155/205,388) tested positive for HIV, 0.05% (106/205,388) for HCV, and 0.045% (76/168,215) for HBV. Donors who tested positive for HIV or HCV by NAT were also positive by serology. There was one of 33,643 donors recently infected with HBV. At time of donation, six of 76 (7.9%) donors with confirmed HBV infection presented virologic and serologic profiles consistent with OBI. By additional studies three were OBI, two were window period infections, and one remained unclassified. NAT contributed significantly to the reduction of the potential risk of HBV transmission with a frequency of one in 56,072, detecting three in 168,215 donors without serologic evidence of infection. NAT also detected three in 168,215 OBIs. The finding of high frequency of recent infections (1/33,643), unexpected for this country, highlights the need of promoting unified effective regulations that enforce the use of NAT in all blood banks in Argentina and points out the importance of assessing the risk of HBV transmission in blood banks of other countries considered to be low-endemic. © 2016 AABB.

  9. Hybrid Capture 2 and cobas human papillomavirus assays perform similarly on SurePath samples from women with abnormalities

    DEFF Research Database (Denmark)

    Fornari, D; Rebolj, M; Bjerregaard, B

    2016-01-01

    OBJECTIVE: In two laboratories (Departments of Pathology, Copenhagen University Hospitals of Herlev and Hvidovre), we compared cobas and Hybrid Capture 2 (HC2) human papillomavirus (HPV) assays using SurePath® samples from women with atypical squamous cells of undetermined significance (ASCUS......) at ≥30 years and women after treatment of cervical intraepithelial neoplasia (CIN). METHODS: Samples from 566 women with ASCUS and 411 women after treatment were routinely tested with HC2 and, thereafter, with cobas. Histological outcomes were retrieved from the Danish Pathology Data Base. We calculated...... the overall agreement between the assays, and compared their sensitivity and specificity for ≥CIN2. RESULTS: In women with ASCUS, HC2 and cobas testing results were similar in the two laboratories. The overall agreement was 91% (95% CI, 88-93). After CIN treatment, the overall agreement was 87% (95% CI, 82...

  10. Human papillomavirus detection with genotyping by the cobas and Aptima assays: Significant differences in HPV 16 detection?

    Science.gov (United States)

    Chorny, Joseph A; Frye, Teresa C; Fisher, Beth L; Remmers, Carol L

    2018-03-23

    The primary high-risk human papillomavirus (hrHPV) assays in the United States are the cobas (Roche) and the Aptima (Hologic). The cobas assay detects hrHPV by DNA analysis while the Aptima detects messenger RNA (mRNA) oncogenic transcripts. As the Aptima assay identifies oncogenic expression, it should have a lower rate of hrHPV and genotype detection. The Kaiser Permanente Regional Reference Laboratory in Denver, Colorado changed its hrHPV assay from the cobas to the Aptima assay. The rates of hrHPV detection and genotyping were compared over successive six-month periods. The overall hrHPV detection rates by the two platforms were similar (9.5% versus 9.1%) and not statistically different. For genotyping, the HPV 16 rate by the cobas was 1.6% and by the Aptima it was 1.1%. These differences were statistically different with the Aptima detecting nearly one-third less HPV 16 infections. With the HPV 18 and HPV 18/45, there was a slightly higher detection rate of HPV 18/45 by the Aptima platform (0.5% versus 0.9%) and this was statistically significant. While HPV 16 represents a low percentage of hrHPV infections, it was detected significantly less by the Aptima assay compared to the cobas assay. This has been previously reported, although not highlighted. Given the test methodologies, one would expect the Aptima to detect less HPV 16. This difference appears to be mainly due to a significantly increased number of non-oncogenic HPV 16 infections detected by the cobas test as there were no differences in HPV 16 detection rates in the high-grade squamous intraepithelial lesions indicating that the two tests have similar sensitivities for oncogenic HPV 16. © 2018 Wiley Periodicals, Inc.

  11. Performance evaluation of the Cobas TaqMan MTB assay on respiratory specimens according to clinical application

    Directory of Open Access Journals (Sweden)

    Jong Eun Park

    2017-11-01

    Full Text Available Objective: To evaluate the performance of the Cobas TaqMan MTB assay (Cobas assay with respect to its clinical application. Methods: This was a retrospective analysis of 1154 results from 1034 patients for whom mycobacterial cultures and the Cobas assay were performed simultaneously. Based on the patient medical records, two categories of clinical application were defined: (1 the diagnosis of patients with a high probability of pulmonary tuberculosis according to clinical and radiological features (n = 128, and (2 the exclusion of tuberculosis in clinically indeterminate patients (n = 1026. Standard culture was used as the reference method. Results: The sensitivity of the Cobas assay for the detection of Mycobacterium tuberculosis was 70.4% (95% confidence interval (CI 49.7–85.5% for category 1, but only 25.0% (95% CI 4.5–64.4% for category 2. The specificity was ≥95.0% for both categories. The positive predictive value was 79.2% (95% CI 57.3–92.1% for category 1 and 33.3% (95% CI 6.0–75.9% for category 2, while the negative predictive value was 92.3% (95% CI 85.0–96.4% for category 1 and 99.4% (95% CI 98.7–99.8% for category 2. Conclusions: The results of this study indicate that Cobas assay results must be interpreted carefully according to the clinical purpose of the assay. Keywords: Mycobacterium tuberculosis, Pulmonary tuberculosis, Cobas TaqMan MTB assay, Korea

  12. The cobas® 6800/8800 System: a new era of automation in molecular diagnostics.

    Science.gov (United States)

    Cobb, Bryan; Simon, Christian O; Stramer, Susan L; Body, Barbara; Mitchell, P Shawn; Reisch, Natasa; Stevens, Wendy; Carmona, Sergio; Katz, Louis; Will, Stephen; Liesenfeld, Oliver

    2017-02-01

    Molecular diagnostics is a key component of laboratory medicine. Here, the authors review key triggers of ever-increasing automation in nucleic acid amplification testing (NAAT) with a focus on specific automated Polymerase Chain Reaction (PCR) testing and platforms such as the recently launched cobas® 6800 and cobas® 8800 Systems. The benefits of such automation for different stakeholders including patients, clinicians, laboratory personnel, hospital administrators, payers, and manufacturers are described. Areas Covered: The authors describe how molecular diagnostics has achieved total laboratory automation over time, rivaling clinical chemistry to significantly improve testing efficiency. Finally, the authors discuss how advances in automation decrease the development time for new tests enabling clinicians to more readily provide test results. Expert Commentary: The advancements described enable complete diagnostic solutions whereby specific test results can be combined with relevant patient data sets to allow healthcare providers to deliver comprehensive clinical recommendations in multiple fields ranging from infectious disease to outbreak management and blood safety solutions.

  13. Cross-reactivity profiles of hybrid capture II, cobas, and APTIMA human papillomavirus assays

    DEFF Research Database (Denmark)

    Preisler, Sarah Nørgaard; Rebolj, Matejka; Ejegod, Ditte Møller

    2016-01-01

    evaluated to what extent these can be explained by cross-reactivity, i.e. positive test results without evidence of high-risk HPV genotypes. The patterns of cross-reactivity have been thoroughly studied for hybrid capture II (HC2) but not yet for newer HPV assays although the manufacturers claimed...... no or limited frequency of cross-reactivity. In this independent study we evaluated the frequency of cross-reactivity for HC2, cobas, and APTIMA assays. Methods Consecutive routine cervical screening samples from 5022 Danish women, including 2859 from women attending primary screening, were tested...... with normal cytology and positive high-risk HPV test results were invited for repeated testing in 18 months. Results Cross-reactivity to low-risk genotypes was detected in 109 (2.2 %) out of 5022 samples on HC2, 62 (1.2 %) on cobas, and 35 (0.7 %) on APTIMA with only 10 of the samples cross-reacting on all 3...

  14. Validation of Method Performance of pH, PCO2, PO2, Na(+), K(+) of Cobas b121 ABG Analyser.

    Science.gov (United States)

    Nanda, Sunil Kumar; Ray, Lopamudra; Dinakaran, Asha

    2014-06-01

    The introduction of a new method or new analyser is a common occurrence in clinical biochemistry laboratory. Blood gas measurements and electrolytes are often performed in Point-of-Care (POC) settings. When a new POC analyser is obtained, the performance of the analyser should be evaluated by comparison to the measurements with the reference analyser in the laboratory. Evaluation of method performance of pH, PCO2, PO2, Na(+), K(+) of cobas b121 ABG analyser. The evaluation of method performance of pH, PO2, PCO2, Na(+), K(+) of cobas b121 ABG analyser was done by comparing the results of 50 patient samples run on cobas b121 with the results obtained from Rapid lab values (reference analyser). Correlation coefficient was calculated from the results obtained from both the analysers. Precision was calculated by running biorad ABG control samples. The correlation coefficient values obtained for parameters were close to 1.0 indicating good correlation. The CV obtained for all the parameters were less than 5 indicating good precision. The new ABG analyser, Cobas b121 correlated well with the reference ABG analyser (Rapid Lab) and could be used to run on patient samples.

  15. Analytic and clinical performance of cobas HPV testing in anal specimens from HIV-positive men who have sex with men.

    Science.gov (United States)

    Wentzensen, Nicolas; Follansbee, Stephen; Borgonovo, Sylvia; Tokugawa, Diane; Sahasrabuddhe, Vikrant V; Chen, Jie; Lorey, Thomas S; Gage, Julia C; Fetterman, Barbara; Boyle, Sean; Sadorra, Mark; Tang, Scott Dahai; Darragh, Teresa M; Castle, Philip E

    2014-08-01

    Anal human papillomavirus (HPV) infections are common, and the incidence of anal cancer is high in HIV-infected men who have sex with men (MSM). To evaluate the performance of HPV assays in anal samples, we compared the cobas HPV test (cobas) to the Roche Linear Array HPV genotyping assay (LA) and cytology in HIV-infected MSM. Cytology and cobas and LA HPV testing were conducted for 342 subjects. We calculated agreement between the HPV assays and the clinical performance of HPV testing and HPV genotyping alone and in combination with anal cytology. We observed high agreement between cobas and LA, with cobas more likely than LA to show positive results for HPV16, HPV18, and other carcinogenic types. Specimens testing positive in cobas but not in LA were more likely to be positive for other markers of HPV-related disease compared to those testing negative in both assays, suggesting that at least some of these were true positives for HPV. cobas and LA showed high sensitivities but low specificities for the detection of anal intraepithelial neoplasia grade 2/3 (AIN2/3) in this population (100% sensitivity and 26% specificity for cobas versus 98.4% sensitivity and 28.9% specificity for LA). A combination of anal cytology and HPV genotyping provided the highest accuracy for detecting anal precancer. A higher HPV load was associated with a higher risk of AIN2/3 with HPV16 (P(trend) < 0.001), HPV18 (P(trend) = 0.07), and other carcinogenic types (P(trend) < 0.001). We demonstrate that cobas can be used for HPV detection in anal cytology specimens. Additional tests are necessary to identify men at the highest risk of anal cancer among those infected with high-risk HPV. Copyright © 2014, American Society for Microbiology. All Rights Reserved.

  16. Comparison of cobas HCV GT against Versant HCV Genotype 2.0 (LiPA) with confirmation by Sanger sequencing.

    Science.gov (United States)

    Yusrina, Falah; Chua, Cui Wen; Lee, Chun Kiat; Chiu, Lily; Png, Tracy Si-Yu; Khoo, Mui Joo; Yan, Gabriel; Lee, Guan Huei; Yan, Benedict; Lee, Hong Kai

    2018-05-01

    Correct identification of infecting hepatitis C virus (HCV) genotype is helpful for targeted antiviral therapy. Here, we compared the HCV genotyping performance of the cobas HCV GT assay against the Versant HCV Genotype 2.0 (LiPA) assay, using 97 archived serum samples. In the event of discrepant or indeterminate results produced by either assay, the core and NS5B regions were sequenced. Of the 97 samples tested by the cobas, 25 (26%) were deemed indeterminate. Sequencing analyses confirmed 21 (84%) of the 25 samples as genotype 6 viruses with either subtype 6m, 6n, 6v, 6xa, or unknown subtype. Of the 97 samples tested by the LiPA, thirteen (13%) were deemed indeterminate. Seven (7%) were assigned with genotype 1, with unavailable/inconclusive results from the core region of the LiPA. Notably, the 7 samples were later found to be either genotype 3 or 6 by sequencing analyses. Moreover, 1 sample by the LiPA was assigned as genotypes 4 (cobas: indeterminate) but were later found to be genotype 3 by sequencing analyses, highlighting its limitation in assigning the correct genotype. The cobas showed similar or slightly higher accuracy (100%; 95% CI 94-100%) compared to the LiPA (99%; 95% CI 92-100%). Twenty-six percent of the 97 samples tested by the cobas had indeterminate results, mainly due to its limitation in identifying genotype 6 other than subtypes 6a and 6b. This presents a significant assay limitation in Southeast Asia, where genotype 6 infection is highly prevalent. Copyright © 2018 Elsevier B.V. All rights reserved.

  17. Doubling immunochemistry laboratory testing efficiency with the cobas e 801 module while maintaining consistency in analytical performance.

    Science.gov (United States)

    Findeisen, P; Zahn, I; Fiedler, G M; Leichtle, A B; Wang, S; Soria, G; Johnson, P; Henzell, J; Hegel, J K; Bendavid, C; Collet, N; McGovern, M; Klopprogge, K

    2018-06-04

    The new immunochemistry cobas e 801 module (Roche Diagnostics) was developed to meet increasing demands on routine laboratories to further improve testing efficiency, while maintaining high quality and reliable data. During a non-interventional multicenter evaluation study, the overall performance, functionality and reliability of the new module was investigated under routine-like conditions. It was tested as a dedicated immunochemistry system at four sites and as a consolidator combined with clinical chemistry at three sites. We report on testing efficiency and analytical performance of the new module. Evaluation of sample workloads with site-specific routine request patterns demonstrated increased speed and almost doubled throughput (maximal 300 tests per h), thus revealing that one cobas e 801 module can replace two cobas e 602 modules while saving up to 44% floor space. Result stability was demonstrated by QC analysis per assay throughout the study. Precision testing over 21 days yielded excellent results within and between labs, and, method comparison performed versus the cobas e 602 module routine results showed high consistency of results for all assays under study. In a practicability assessment related to performance and handling, 99% of graded features met (44%) or even exceeded (55%) laboratory expectations, with enhanced reagent management and loading during operation being highlighted. By nearly doubling immunochemistry testing efficiency on the same footprint as a cobas e 602 module, the new module has a great potential to further consolidate and enhance laboratory testing while maintaining high quality analytical performance with Roche platforms. Copyright © 2018 The Canadian Society of Clinical Chemists. Published by Elsevier Inc. All rights reserved.

  18. Comparison of the Roche COBAS AmpliPrep/COBAS TaqMan HIV-1 test v1.0 with v2.0 in HIV-1 viral load quantification

    Directory of Open Access Journals (Sweden)

    Yi-Ching Tung

    2015-04-01

    Full Text Available Roche modified the COBAS AmpliPrep/COBAS TaqMan human immunodeficiency virus type 1 (HIV-1 test version 1.0 (CAP/CTM v1.0, resulting in the COBAS AmpliPrep/COBAS TaqMan HIV-1 test version 2.0 (CAP/CTM v2.0. The aim of this study was to evaluate the performance of the CAP/CTM v2.0 and to compare this performance with that of the CAP/CTM v1.0. The study was conducted in a small local study group in Kaohsiung Medical University Hospital, Kaohsiung, Taiwan. A total of 86 plasma samples from HIV-1-seropositive patients were tested using the two assays. The correlation and concordance of results between the two assays were calculated. The CAP/CTM v2.0 generated higher values than did the CAP/CTM v1.0, and five samples (5.8% yielded a difference of > 1 log10 copies/mL. In addition, our data show that CAP/CTM v1.0 and CAP/CTM v2.0 yielded relatively consistent values for 23 samples with low viral loads (< 200 copies/mL. Furthermore, when viral loads were in a medium range (2–5 log10 copies/mL, the results of the two assays were more compatible. This study shows a good correlation between CAP/CTM v1.0 and v2.0 in HIV-1 viral load measurement. Further attention must be paid to those cases in which measured viral loads present larger differences between the two assays.

  19. Transference of CALIPER pediatric reference intervals to biochemical assays on the Roche cobas 6000 and the Roche Modular P.

    Science.gov (United States)

    Higgins, Victoria; Chan, Man Khun; Nieuwesteeg, Michelle; Hoffman, Barry R; Bromberg, Irvin L; Gornall, Doug; Randell, Edward; Adeli, Khosrow

    2016-01-01

    The Canadian Laboratory Initiative on Pediatric Reference Intervals (CALIPER) has recently established pediatric age- and sex-specific reference intervals for over 85 biochemical markers on the Abbott Architect system. Previously, CALIPER reference intervals for several biochemical markers were successfully transferred from Abbott assays to Roche, Beckman, Ortho, and Siemens assays. This study further broadens the CALIPER database by performing transference and verification for 52 biochemical assays on the Roche cobas 6000 and the Roche Modular P. Using CLSI C28-A3 and EP9-A2 guidelines, transference of the CALIPER reference intervals was attempted for 16 assays on the Roche cobas 6000 and 36 on the Modular P. Calculated reference intervals were further verified using 100 healthy CALIPER samples. Most assays showed strong correlation between assay systems and were transferable from Abbott to the Roche cobas 6000 (81%) and the Modular P (86%). Bicarbonate and magnesium were not transferable on either system and calcium and prealbumin were not transferable to the Modular P. Of the transferable analytes, 62% and 61% were verified on the cobas 6000 and the Modular P, respectively. This study extends the utility of the CALIPER database to two additional analytical systems, which facilitates the broad application of CALIPER reference intervals at pediatric centers utilizing Roche biochemical assays. Transference studies across different analytical platforms can later be collectively analyzed in an attempt to develop common reference intervals across all clinical chemistry instruments to harmonize laboratory test interpretation in diagnosis and monitoring of pediatric disease. Copyright © 2015 The Canadian Society of Clinical Chemists. Published by Elsevier Inc. All rights reserved.

  20. Meticulous plasma isolation is essential to avoid false low-level viraemia in Roche Cobas HIV-1 viral load assays.

    Science.gov (United States)

    Mortier, Virginie; Vancoillie, Leen; Dauwe, Kenny; Staelens, Delfien; Demecheleer, Els; Schauvliege, Marlies; Dinakis, Sylvie; Van Maerken, Tom; Dessilly, Géraldine; Ruelle, Jean; Verhofstede, Chris

    2017-10-24

    Pre-analytical sample processing is often overlooked as a potential cause of inaccurate assay results. Here we demonstrate how plasma, extracted from standard EDTA-containing blood collection tubes, may contain traces of blood cells consequently resulting in a false low-level HIV-1 viral load when using Roche Cobas HIV-1 assays. The presence of human DNA in Roche Cobas 4800 RNA extracts and in RNA extracts from the Abbott HIV-1 RealTime assay was assessed by quantifying the human albumin gene by means of quantitative PCR. RNA was extracted from plasma samples before and after an additional centrifugation and tested for viral load and DNA contamination. The relation between total DNA content and viral load was defined. Elevated concentrations of genomic DNA were detected in 28 out of 100 Cobas 4800 extracts and were significantly more frequent in samples processed outside of the AIDS Reference Laboratory. An association between genomic DNA presence and spurious low-level viraemia results was demonstrated. Supplementary centrifugation of plasma before RNA extraction eliminated the contamination and the false viraemia. Plasma isolated from standard EDTA-containing blood collection tubes may contain traces of HIV DNA leading to false viral load results above the clinical cutoff. Supplementary centrifugation of plasma before viral load analysis may eliminate the occurrence of this spurious low-level viraemia.

  1. The cobas p 630 instrument: a dedicated pre-analytic solution to optimize COBAS® AmpliPrep/COBAS® TaqMan® system workflow and turn-around-time.

    Science.gov (United States)

    Vallefuoco, L; Sorrentino, R; Spalletti Cernia, D; Colucci, G; Portella, G

    2012-12-01

    The cobas p 630, a fully automated pre-analytical instrument for primary tube handling recently introduced to complete the Cobas(®) TaqMan systems portfolio, was evaluated in conjunction with: the COBAS(®) AmpliPrep/COBAS(®) TaqMan HBV Test, v2.0, COBAS(®) AmpliPrep/COBAS(®) TaqMan HCV Test, v1.0 and COBAS(®) AmpliPrep/COBAS(®) TaqMan HIV Test, v2.0. The instrument performance in transferring samples from primary to secondary tubes, its impact in improving COBAS(®) AmpliPrep/COBAS(®) TaqMan workflow and hands-on reduction and the risk of possible cross-contamination were assessed. Samples from 42 HBsAg positive, 42 HCV and 42 HIV antibody (Ab) positive patients as well as 21 healthy blood donors were processed with or without automated primary tubes. HIV, HCV and HBsAg positive samples showed a correlation index of 0.999, 0.987 and of 0.994, respectively. To assess for cross-contamination, high titer HBV DNA positive samples, HCV RNA and HIV RNA positive samples were distributed in the cobas p 630 in alternate tube positions, adjacent to negative control samples within the same rack. None of the healthy donor samples showed any reactivity. Based on these results, the cobas p 630 can improve workflow and sample tracing in laboratories performing molecular tests, and reduce turnaround time, errors, and risks. Copyright © 2012 Elsevier B.V. All rights reserved.

  2. Measurement Differences Between Two Immunoassay Systems for LH and FSH: A Comparison of Roche Cobas e601 vs. Abbott Architect i2000sr.

    Science.gov (United States)

    Yin, Lianli; Tang, Yinghua; Chen, Xiang; Sun, Yifan

    2018-03-01

    Follicle-stimulating hormone (FSH) and luteinizing hormone (LH) regulate the growth and reproductive activity of gonadal tissue and determine the concentration of LH is essential for the prediction of ovulation. Collectively, FSH and LH are important measurements to ascertain the causes of infertility as well as diagnosing disorders such as polycystic ovary syndrome and pituitary and gonadal dysfunction. This study compares the correlation between LH and FSH measurements during examination with two different systems, Architect i2000sr (Abbott Laboratories; Lake Bluff, IL, USA) and Cobas e601 (Roche; Geneva, Switzerland), and assesses the differences between these systems. Serum analysis was performed for 95 patients using both the Cobas e601 and Architect i2000sr systems. The method used to compare the systems was Passing-Bablok regression analysis with a Bland-Altman agreement plot. Inter-rater agreement was analyzed using a concordance correlation coefficient. Architect i2000sr and Cobas e601 have strong correlations in their LH and FSH results. However, the Bland-Altman plot shows that LH and FSH measurements in Cobas e601 are about 1.31 times and 1.26 times higher than those in Architect i2000sr, respectively. Passing-Bablok regression analysis also shows significant proportional deviation between them. The difference between the test results for LH and FSH in Cobas e601 and Architect i2000sr indicate that the results from one system cannot be directly used to evaluate the other system.

  3. An Evaluation of the Cobas4800 HPV Test on Cervico-Vaginal Specimens in Liquid versus Solid Transport Media.

    Directory of Open Access Journals (Sweden)

    Hongxue Luo

    Full Text Available Determine the ability of the Cobas 4800 assay to detect high-risk human papillomavirus (HrHPV and high-grade cervical lesions when using cervico-vaginal samples applied to liquid medium and solid media cards compared to a direct cervical sample.Two cervico-vaginal specimens (pseudo self-collected were obtained from 319 women. One was applied to an iFTA Card (FTA then the brush placed in liquid-based medium (LSELF; the other was applied to a new solid media: POI card (POI. The clinical performance of Cobas4800 assay using the three aforementioned specimens was compared to direct collected endocervical specimens in liquid media (LDOC.The overall agreements of HrHPV detection were 84.2% (LSELF vs. LDOC, 81.0% (FTA vs. LDOC, and 82.3% (POI vs. LDOC. LSELF, FTA and POI identified 98.0%, 79.6%, and 97.5% positive cases of LDOC. Sensitivity to identify CIN2+ were 98.4% (LSELF, 73.8% (FTA, 95.1% (POI, and 93.4% (LDOC respectively. FTA had 78.1% and 90.4% agreement with the LSELF samples for all HrHPV and HPV16/18 detection respectively, while POI had 91.6% for both.Cobas4800 HPV test combined with cervico-vaginal specimens applied to both liquid media and POI solid card are accurate to detect HrHPV infection and high-grade cervical lesions as compared with direct endocervical samples in liquid media.

  4. An Evaluation of the Cobas4800 HPV Test on Cervico-Vaginal Specimens in Liquid versus Solid Transport Media.

    Science.gov (United States)

    Luo, Hongxue; Du, Hui; Maurer, Kathryn; Belinson, Jerome L; Wang, Guixiang; Liu, Zhihong; Zhang, Lijie; Zhou, Yanqiu; Wang, Chun; Tang, Jinlong; Qu, Xinfeng; Wu, Ruifang

    2016-01-01

    Determine the ability of the Cobas 4800 assay to detect high-risk human papillomavirus (HrHPV) and high-grade cervical lesions when using cervico-vaginal samples applied to liquid medium and solid media cards compared to a direct cervical sample. Two cervico-vaginal specimens (pseudo self-collected) were obtained from 319 women. One was applied to an iFTA Card (FTA) then the brush placed in liquid-based medium (LSELF); the other was applied to a new solid media: POI card (POI). The clinical performance of Cobas4800 assay using the three aforementioned specimens was compared to direct collected endocervical specimens in liquid media (LDOC). The overall agreements of HrHPV detection were 84.2% (LSELF vs. LDOC), 81.0% (FTA vs. LDOC), and 82.3% (POI vs. LDOC). LSELF, FTA and POI identified 98.0%, 79.6%, and 97.5% positive cases of LDOC. Sensitivity to identify CIN2+ were 98.4% (LSELF), 73.8% (FTA), 95.1% (POI), and 93.4% (LDOC) respectively. FTA had 78.1% and 90.4% agreement with the LSELF samples for all HrHPV and HPV16/18 detection respectively, while POI had 91.6% for both. Cobas4800 HPV test combined with cervico-vaginal specimens applied to both liquid media and POI solid card are accurate to detect HrHPV infection and high-grade cervical lesions as compared with direct endocervical samples in liquid media.

  5. High-Throughput Testing of Urogenital and Extragenital Specimens for Detection of Chlamydia Trachomatis and Neisseria Gonorrhoeae with Cobas® CT/NG.

    Science.gov (United States)

    Marlowe, Elizabeth M; Hardy, David; Krevolin, Mark; Gohl, Peter; Bertram, Alexander; Arcenas, Rodney; Seiverth, Britta; Schneider, Tanja; Liesenfeld, Oliver

    2017-09-01

    We compared the analytical and clinical performance of cobas ® CT/NG for use on the Cobas ® 6800/8800 Systems with the Cobas ® 4800 CT/NG Test from urogenital and extragenital specimens in over 12,000 specimens from both male and female subjects in Germany and the United States. The analytical sensitivity was ≤40 EB/ml for Chlamydia trachomatis (CT) and ≤1 CFU/ml for Neisseria gonorrhoeae (NG). Using clinical specimens, the overall percent agreement with the Cobas ® 4800 CT/NG Test was >98.5%. Across urogenital specimens, there were 93 discrepant specimens; 76 (93.8%) of 81 CT discrepant specimens were 6800+/4800- and 10 (83.3%) of 12 NG discrepant specimens were 6800+/4800-. Sequencing verified CT results for 45 (61.6%) of 73 samples positive by 6800 and 1 (20%) of 5 positive by 4800. Similarly, 7 (70.0%) of 10 NG samples positive by 6800 and 1 of 2 positive by 4800 were confirmed by sequencing. Among discrepant extragenital specimens (all 6800+/4800-), 7 (50%) of 14 oropharyngeal and 23 (76.7%) of 30 anorectal CT discordant samples were confirmed as CT positive by sequencing; all 8 anorectal and 20 (90.9%) of 22 oropharyngeal NG discordant results were also confirmed as NG positive. In conclusion, Cobas ® CT/NG for use on the Cobas ® 6800/8800 Systems provides high-throughput automated solutions for sexually transmitted infection (STI) screening programs.

  6. Improving clinical laboratory efficiency: a time-motion evaluation of the Abbott m2000 RealTime and Roche COBAS AmpliPrep/COBAS TaqMan PCR systems for the simultaneous quantitation of HIV-1 RNA and HCV RNA.

    Science.gov (United States)

    Amendola, Alessandra; Coen, Sabrina; Belladonna, Stefano; Pulvirenti, F Renato; Clemens, John M; Capobianchi, M Rosaria

    2011-08-01

    Diagnostic laboratories need automation that facilitates efficient processing and workflow management to meet today's challenges for expanding services and reducing cost, yet maintaining the highest levels of quality. Processing efficiency of two commercially available automated systems for quantifying HIV-1 and HCV RNA, Abbott m2000 system and Roche COBAS Ampliprep/COBAS TaqMan 96 (docked) systems (CAP/CTM), was evaluated in a mid/high throughput workflow laboratory using a representative daily workload of 24 HCV and 72 HIV samples. Three test scenarios were evaluated: A) one run with four batches on the CAP/CTM system, B) two runs on the Abbott m2000 and C) one run using the Abbott m2000 maxCycle feature (maxCycle) for co-processing these assays. Cycle times for processing, throughput and hands-on time were evaluated. Overall processing cycle time was 10.3, 9.1 and 7.6 h for Scenarios A), B) and C), respectively. Total hands-on time for each scenario was, in order, 100.0 (A), 90.3 (B) and 61.4 min (C). The interface of an automated analyzer to the laboratory workflow, notably system set up for samples and reagents and clean up functions, are as important as the automation capability of the analyzer for the overall impact to processing efficiency and operator hands-on time.

  7. Verwerking en rapportage van meetgegevens verkregen met een Cobas-Bio centrifugaal-analysator m.b.v. de RIVM-computer

    NARCIS (Netherlands)

    Steentjes; G.M.; Koedam; J.C.

    1985-01-01

    Voor de verwerking van grote hoeveelheden meetgegevens is o.a. voor de Cobas-Bio centrifugaal analysator m.b.v. de RIVM computer een systeem ontwikkeld dat zowel monster (patient) identificatie, als rapportage van alle analyseresultaten verzorgt, zodat door het automatisch uitvoeren van een

  8. Comparison of COBAS AMPLICOR Neissefia gonorrhoeae PCR, including confirmation with N-gonorrhoeae-specific 16S rRNA PCR, with traditional culture

    NARCIS (Netherlands)

    Luijt, DS; Bos, PAJ; van Zwet, AA; Vader, PCV; Schirm, J

    A total of 3,023 clinical specimens were tested for Neisseria gonorrhoeae by using COBAS AMPLICOR (CA) PCR and confirmation of positives by N. gonorrhoeae-specific 16S rRNA PCR. The sensitivity of CA plus 16S rRNA PCR was 98.8%, compared to 68.2% for culture. Confirmation of CA positives increased

  9. Detection of BRAF V600 mutations in melanoma: evaluation of concordance between the Cobas® 4800 BRAF V600 mutation test and the methods used in French National Cancer Institute (INCa) platforms in a real-life setting.

    Science.gov (United States)

    Mourah, Samia; Denis, Marc G; Narducci, Fabienne Escande; Solassol, Jérôme; Merlin, Jean-Louis; Sabourin, Jean-Christophe; Scoazec, Jean-Yves; Ouafik, L'Houcine; Emile, Jean-François; Heller, Remy; Souvignet, Claude; Bergougnoux, Loïc; Merlio, Jean-Philippe

    2015-01-01

    Vemurafenib is approved for the treatment of metastatic melanoma in patients with BRAF V600 mutation. In pivotal clinical trials, BRAF testing has always been done with the approved cobas 4800 BRAF test. In routine practice, several methods are available and are used according to the laboratories usual procedures. A national, multicenter, non-interventional study was conducted with prospective and consecutive collection of tumor samples. A parallel evaluation was performed in routine practice between the cobas 4800 BRAF V600 mutation test and home brew methods (HBMs) of 12 national laboratories, labelled and funded by the French National Cancer Institute (INCa). For 420 melanoma samples tested, the cobas method versus HBM showed a high concordance (93.3%; kappa = 0.86) in BRAF V600 genotyping with similar mutation rates (34.0% versus 35.7%, respectively). Overall, 97.4% and 98.6% of samples gave valid results using the cobas and HBM, respectively. Of the 185 samples strictly fulfilling the cobas guidelines, the concordance rate was even higher (95.7%; kappa = 0.91; 95%CI [0.85; 0.97]). Out of the 420 samples tested, 28 (6.7%) showed discordance between HBM and cobas. This prospective study shows a high concordance rate between the cobas 4800 BRAF V600 test and home brew methods in the routine detection of BRAF V600E mutations.

  10. Detection of BRAF V600 Mutations in Melanoma: Evaluation of Concordance between the Cobas® 4800 BRAF V600 Mutation Test and the Methods Used in French National Cancer Institute (INCa) Platforms in a Real-Life Setting

    Science.gov (United States)

    Mourah, Samia; Denis, Marc G.; Narducci, Fabienne Escande; Solassol, Jérôme; Merlin, Jean-Louis; Sabourin, Jean-Christophe; Scoazec, Jean-Yves; Ouafik, L’Houcine; Emile, Jean-François; Heller, Remy; Souvignet, Claude; Bergougnoux, Loïc; Merlio, Jean-Philippe

    2015-01-01

    Vemurafenib is approved for the treatment of metastatic melanoma in patients with BRAF V600 mutation. In pivotal clinical trials, BRAF testing has always been done with the approved cobas 4800 BRAF test. In routine practice, several methods are available and are used according to the laboratories usual procedures. A national, multicenter, non-interventional study was conducted with prospective and consecutive collection of tumor samples. A parallel evaluation was performed in routine practice between the cobas 4800 BRAF V600 mutation test and home brew methods (HBMs) of 12 national laboratories, labelled and funded by the French National Cancer Institute (INCa). For 420 melanoma samples tested, the cobas method versus HBM showed a high concordance (93.3%; kappa = 0.86) in BRAF V600 genotyping with similar mutation rates (34.0% versus 35.7%, respectively). Overall, 97.4% and 98.6% of samples gave valid results using the cobas and HBM, respectively. Of the 185 samples strictly fulfilling the cobas guidelines, the concordance rate was even higher (95.7%; kappa = 0.91; 95%CI [0.85; 0.97]). Out of the 420 samples tested, 28 (6.7%) showed discordance between HBM and cobas. This prospective study shows a high concordance rate between the cobas 4800 BRAF V600 test and home brew methods in the routine detection of BRAF V600E mutations. PMID:25789737

  11. Detection of BRAF V600 mutations in melanoma: evaluation of concordance between the Cobas® 4800 BRAF V600 mutation test and the methods used in French National Cancer Institute (INCa platforms in a real-life setting.

    Directory of Open Access Journals (Sweden)

    Samia Mourah

    Full Text Available Vemurafenib is approved for the treatment of metastatic melanoma in patients with BRAF V600 mutation. In pivotal clinical trials, BRAF testing has always been done with the approved cobas 4800 BRAF test. In routine practice, several methods are available and are used according to the laboratories usual procedures. A national, multicenter, non-interventional study was conducted with prospective and consecutive collection of tumor samples. A parallel evaluation was performed in routine practice between the cobas 4800 BRAF V600 mutation test and home brew methods (HBMs of 12 national laboratories, labelled and funded by the French National Cancer Institute (INCa. For 420 melanoma samples tested, the cobas method versus HBM showed a high concordance (93.3%; kappa = 0.86 in BRAF V600 genotyping with similar mutation rates (34.0% versus 35.7%, respectively. Overall, 97.4% and 98.6% of samples gave valid results using the cobas and HBM, respectively. Of the 185 samples strictly fulfilling the cobas guidelines, the concordance rate was even higher (95.7%; kappa = 0.91; 95%CI [0.85; 0.97]. Out of the 420 samples tested, 28 (6.7% showed discordance between HBM and cobas. This prospective study shows a high concordance rate between the cobas 4800 BRAF V600 test and home brew methods in the routine detection of BRAF V600E mutations.

  12. Establishing diagnostic cut-off criteria for the COBAS AmpliPrep/COBAS TaqMan HIV-1 Qualitative test through validation against the Amplicor DNA test v1.5 for infant diagnosis using dried blood spots.

    Science.gov (United States)

    Maritz, Jean; Preiser, Wolfgang; van Zyl, Gert U

    2012-02-01

    As antibody testing cannot confirm HIV-1 infection in children less than 18 months of age, diagnosis in these children depends on nucleic acid testing. The COBAS(®) AmpliPrep/COBAS(®) TaqMan(®) (CAP/CTM, Roche(®) Molecular Systems, Inc., Branchburg, NJ) HIV-1 Qualitative test is a total nucleic acid real-time PCR assay utilising whole EDTA blood or dried blood spots (DBS), which recently replaced the Roche(®) AMPLICOR(®) DNA test v1.5 (Amplicor) as the diagnostic HIV PCR assay in many South African laboratories. For the Amplicor assay, stringent diagnostic criteria were previously formulated for the local population, and a comparison reported the CAP/CTM's sensitivity at 99.7% and specificity at 100% for both sample types compared to these Amplicor criteria. To validate the assay prior to introduction in our laboratory and to define stringent diagnostic cut-off criteria. Whole EDTA blood samples from patients younger than 18 months sent for routine HIV-1 diagnosis were tested by Amplicor, and positive results were confirmed from DBS. CAP/CTM assays were subsequently performed from DBS. The CAP/CTM had a sensitivity of 98.8% and a specificity of 97.1%, but a positive predictive value (PPV) of only 78.7% compared to the Amplicor assay. Samples positive by CAP/CTM but negative by Amplicor displayed poor amplification curves compared to concordant positive samples. Upon re-testing those with sufficient material available by CAP/CTM, all showed negative results. The decreased PPV may either be due to false positive CAP/CTM results, or increased sensitivity compared to the Amplicor assay. Criteria were formulated for defining presumed false-positive results. Copyright © 2011 Elsevier B.V. All rights reserved.

  13. Evaluation of a third party enzymatic ammonia method for use on the Roche Cobas 6000 (c501) automated platform.

    Science.gov (United States)

    Seiden-Long, Isolde; Schnabl, Kareena; Skoropadyk, Wendy; Lennon, Nola; McKeage, Arlayne

    2014-08-01

    Adaptation of the Randox Enzymatic Manual UV Ammonia method to be used on the Roche Cobas 6000 (c501) automated analyzer platform. The Randox ammonia reagent was evaluated for precision, linearity, accuracy and interference from hemolysis, icterus and lipemia on the Roche c501 analyzer. Comparison studies were conducted for the Randox reagent between Roche c501, Siemens Vista, Ortho Vitros 250, and Beckman DxC methods. The Randox reagent demonstrates acceptable within-run (L1=65 μmol/L, CV 3.4% L2=168 μmol/L, CV 1.9%) and between-run precision (L1=29 μmol/L, CV 7.3% L2=102 μmol/L, CV 3.0%), Analytical Measurement Range (7-940 μmol/L), and accuracy. The method interference profile is superior for the Randox method (hemolysis index up to 600, icteric index up to 60, lipemic index up to 100) as compared to the Roche method (hemolysis index up to 200, icteric index up to 10, lipemic index up to 50). Comparison was very good between the Randox reagent and two other wet chemistry platforms. The Randox Enzymatic Manual UV Ammonia reagent is an available alternative to the Roche Cobas c501 reagent. The method is more robust to endogenous interferences and less prone to instrument error flags, thus allowing the majority of clinical specimens to be reported without additional sample handling at our institution. Copyright © 2014 The Canadian Society of Clinical Chemists. Published by Elsevier Inc. All rights reserved.

  14. Characterization and Validation of the LT-SYS Copper Assay on a Roche Cobas 8000 c502 Analyzer.

    Science.gov (United States)

    Kraus, F Bernhard; Mischereit, Marlies; Eller, Christoph; Ludwig-Kraus, Beatrice

    2017-02-01

    Validation of the LT-SYS quantitative in vitro copper assay on a Roche Cobas 8000 c502 analyzer and comparison with a BIOMED assay on a Roche Cobas Mira analyzer. Imprecision and bias were quantified at different concentration levels (serum and plasma) over a 20-day period. Linearity was assessed covering a range from 4.08 µmol/L to 33.8 µmol/L. Limit of blank (LoB) and limit of detection (LoD) were established based on a total of 120 blank and low-level samples. The method comparison was based on 58 plasma samples. Within-run imprecision ranged from 0.7% to 1.2% and within-laboratory imprecision from 1.4% to 3.3%. Relative bias for the 2 serum pools with known target values was less than 2.5%. The assay did not deviate from linearity over the tested measuring range. LoB and LoD were 0.12 µmol/L and 0.23 µmol/L, respectively. The method comparison revealed an average deviation of 11.5% (2.016 µmol/L), and the linear regression fit was y = 1.464 + 0.795x. The LT-SYS copper assay characterized in this study showed a fully acceptable performance with good degrees of imprecision and bias, no deviation from linearity in the relevant measuring rangem, and very low LoB and LoD. © American Society for Clinical Pathology, 2016. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

  15. Automated Extraction of Formalin-Fixed, Paraffin-Embedded Tissue for High-Risk Human Papillomavirus Testing of Head and Neck Squamous Cell Carcinomas Using the Roche Cobas 4800 System.

    Science.gov (United States)

    Kerr, Darcy A; Sweeney, Brenda; Arpin, Ronald N; Ring, Melissa; Pitman, Martha B; Wilbur, David C; Faquin, William C

    2016-08-01

    -Testing for high-risk human papillomavirus (HR-HPV) in head and neck squamous cell carcinomas (HNSCCs) is important for both prognostication and clinical management. Several testing platforms are available for HR-HPV; however, effective alternative automated approaches are needed. -To assess the performance of the automated Roche cobas 4800 HPV real-time polymerase chain reaction-based system on formalin-fixed, paraffin-embedded HNSCC specimens and compare results with standard methods of in situ hybridization (ISH) and p16 immunohistochemistry. -Formalin-fixed, paraffin-embedded samples of HNSCC were collected from archival specimens in the Department of Pathology, Massachusetts General Hospital (Boston), and prepared using the automated system by deparaffinization and dehydration followed by tissue lysis. Samples were integrated into routine cervical cytology testing runs by cobas. Corresponding formalin-fixed, paraffin-embedded samples were evaluated for HR-HPV by ISH and p16 by immunohistochemistry. Discrepant cases were adjudicated by polymerase chain reaction. -Sixty-two HNSCC samples were analyzed using the automated cobas system, ISH, and immunohistochemistry. Fifty-two percent (n = 32 of 62) of formalin-fixed, paraffin-embedded tumors were positive for HR-HPV by cobas. Eighty-eight percent (n = 28 of 32) of cases were the HPV 16 subtype and 12% (n = 4 of 32) were other HR-HPV subtypes. Corresponding testing with ISH was concordant in 92% (n = 57 of 62) of cases. Compared with the adjudication polymerase chain reaction standard, there were 3 false-positive cases by cobas. -Concordance in HNSCC HR-HPV status between cobas and ISH was more than 90%. The cobas demonstrated a sensitivity of 100% and a specificity of 91% for detection of HR-HPV. Advantages favoring cobas include its automation, cost efficiency, objective results, and ease of performance.

  16. Fluorimetric methods for the measurement of intermediate metabolites (lactate, pyruvate, alanine, β-hydroxybutyrate, glycerol) using a COBAS FARA centrifugal analyser

    OpenAIRE

    Monti, L. D.; Sandoli, P. E.; Costa, S.; Phan, V. C.; Piatti, P. M.

    1993-01-01

    Intermediate products of the metabolism of glucose, fat and amino-acid are important in the evaluation of such metabolic disorders as diabetes mellitus, liver disease and metabolic acidosis. In the present study, methods for the measurement of intermediate metabolites (lactate, pyruvate, alanine, β-hydroxybutyrate and glycerol) have been adapted to a fast centrifugal analyzer: the COBAS FARA. Correlation coeffcients rangedfrom 0.90 to 0.99, compared to established manual spectrophotometric me...

  17. Utility of the Roche Cobas 4800 for detection of high-risk human papillomavirus in formalin-fixed paraffin-embedded oropharyngeal squamous cell carcinoma.

    Science.gov (United States)

    Pettus, Jason R; Wilson, Terri L; Steinmetz, Heather B; Lefferts, Joel A; Tafe, Laura J

    2017-02-01

    Clinical laboratories are expected to reliably identify human papilloma virus (HPV) associated oropharyngeal squamous cell carcinoma (OPSCC) for prognostic and potential therapeutic applications. In addition to surrogate p16 immunohistochemistry (IHC) testing, DNA-based HPV-specific testing strategies are widely utilized. Recognizing the efficiency of the Roche Cobas 4800 platform for testing gynecological cytology specimens for high-risk HPV, we elected to evaluate the potential utility of this platform for testing formalin-fixed paraffin-embedded (FFPE) OPSCC tissue. Using the Roche Linear Array assay for comparison, we tested twenty-eight samples (16 primary OPSCC, 2 lymph node metastases from primary OPSCC, 1 oral tongue carcinoma, 3 benign squamous papillomas, and 3 non-oropharyngeal carcinoma tissues). Excluding two invalid results, the Roche Cobas 4800 testing resulted in excellent inter-assay concordance (25/26, 96.2%) and 100% concordance for HPV-16/HPV-18 positive samples. This data suggests that the Roche Cobas 4800 platform may be a cost-effective method for testing OPSCC FFPE tissues in a clinical molecular pathology laboratory setting. Copyright © 2016 Elsevier Inc. All rights reserved.

  18. The Roche Immunoturbidimetric Albumin Method on Cobas c 501 Gives Higher Values Than the Abbott and Roche BCP Methods When Analyzing Patient Plasma Samples.

    Science.gov (United States)

    Helmersson-Karlqvist, Johanna; Flodin, Mats; Havelka, Aleksandra Mandic; Xu, Xiao Yan; Larsson, Anders

    2016-09-01

    Serum/plasma albumin is an important and widely used laboratory marker and it is important that we measure albumin correctly without bias. We had indications that the immunoturbidimetric method on Cobas c 501 and the bromocresol purple (BCP) method on Architect 16000 differed, so we decided to study these methods more closely. A total of 1,951 patient requests with albumin measured with both the Architect BCP and Cobas immunoturbidimetric methods were extracted from the laboratory system. A comparison with fresh plasma samples was also performed that included immunoturbidimetric and BCP methods on Cobas c 501 and analysis of the international protein calibrator ERM-DA470k/IFCC. The median difference between the Abbott BCP and Roche immunoturbidimetric methods was 3.3 g/l and the Roche method overestimated ERM-DA470k/IFCC by 2.2 g/l. The Roche immunoturbidimetric method gave higher values than the Roche BCP method: y = 1.111x - 0.739, R² = 0.971. The Roche immunoturbidimetric albumin method gives clearly higher values than the Abbott and Roche BCP methods when analyzing fresh patient samples. The differences between the two methods were similar at normal and low albumin levels. © 2016 Wiley Periodicals, Inc.

  19. Quantification of Parvovirus B19 DNA Using COBAS AmpliPrep Automated Sample Preparation and LightCycler Real-Time PCR

    Science.gov (United States)

    Schorling, Stefan; Schalasta, Gunnar; Enders, Gisela; Zauke, Michael

    2004-01-01

    The COBAS AmpliPrep instrument (Roche Diagnostics GmbH, D-68305 Mannheim, Germany) automates the entire sample preparation process of nucleic acid isolation from serum or plasma for polymerase chain reaction analysis. We report the analytical performance of the LightCycler Parvovirus B19 Quantification Kit (Roche Diagnostics) using nucleic acids isolated with the COBAS AmpliPrep instrument. Nucleic acids were extracted using the Total Nucleic Acid Isolation Kit (Roche Diagnostics) and amplified with the LightCycler Parvovirus B19 Quantification Kit. The kit combination processes 72 samples per 8-hour shift. The lower detection limit is 234 IU/ml at a 95% hit-rate, linear range approximately 104-1010 IU/ml, and overall precision 16 to 40%. Relative sensitivity and specificity in routine samples from pregnant women are 100% and 93%, respectively. Identification of a persistent parvovirus B19-infected individual by the polymerase chain reaction among 51 anti-parvovirus B19 IgM-negative samples underlines the importance of additional nucleic acid testing in pregnancy and its superiority to serology in identifying the risk of parvovirus B19 transmission via blood or blood products. Combination of the Total Nucleic Acid Isolation Kit on the COBAS AmpliPrep instrument with the LightCycler Parvovirus B19 Quantification Kit provides a reliable and time-saving tool for sensitive and accurate detection of parvovirus B19 DNA. PMID:14736825

  20. Evaluation of the performance of Abbott m2000 and Roche COBAS Ampliprep/COBAS Taqman assays for HIV-1 viral load determination using dried blood spots and dried plasma spots in Kenya.

    Science.gov (United States)

    Zeh, Clement; Ndiege, Kenneth; Inzaule, Seth; Achieng, Rebecca; Williamson, John; Chih-Wei Chang, Joy; Ellenberger, Dennis; Nkengasong, John

    2017-01-01

    Routine HIV viral load testing is not widely accessible in most resource-limited settings, including Kenya. To increase access to viral load testing, alternative sample types like dried blood spots (DBS), which overcome the logistic barriers associated with plasma separation and cold chain shipment need to be considered and evaluated. The current study evaluated matched dried blood spots (DBS) and dried plasma spots (DPS) against plasma using the Abbott M 2000 (Abbott) and Roche Cobas Ampliprep/Cobas TaqMan (CAP/CTM) quantitative viral load assays in western Kenya. Matched plasma DBS and DPS were obtained from 200 HIV-1 infected antiretroviral treatment (ART)-experienced patients attending patient support centers in Western Kenya. Standard quantitative assay performance parameters with accompanying 95% confidence intervals (CI) were assessed at the assays lower detection limit (400cps/ml for CAP/CTM and 550cps/ml for Abbott) using SAS version 9.2. Receiver operating curves (ROC) were further used to assess viral-load thresholds with best assay performance (reference assay CAP/CTM plasma). Using the Abbott test, the sensitivity and specificity, respectively, for DPS were (97.3%, [95%CI: 93.2-99.2] and 98.1% [95%CI: 89.7-100]) and those for DBS (93.9% [95%CI: 88.8-97.2] and 88.0% [95%CI: 82.2-92.4]). The correlation and agreement using paired plasma and DPS/DBS were strong, with r2 = 90.5 and rc = 68.1. The Bland-Altman relative percent change was 95.3 for DPS, (95%CI: 90.4-97.7) and 73.6 (95%CI: 51.6-86.5) for DBS. Using the CAP/CTM assay, the sensitivity for DBS was significantly higher compared to DPS (100.0% [95% CI: 97.6-100.0] vs. 94.7% [95%CI: 89.8-97.7]), while the specificity for DBS was lower: 4%, [95% CI: 0.4-13.7] compared to DPS: 94.0%, [95% CI: 83.5-98.7]. When compared under different clinical relevant thresholds, the accuracy for the Abbott assay was 95% at the 1000cps/ml cut-off with a sensitivity and specificity of 96.6% [95% CI 91.8-98.7] and 90

  1. Laboratory blood analysis in Strigiformes-Part II: plasma biochemistry reference intervals and agreement between the Abaxis Vetscan V2 and the Roche Cobas c501.

    Science.gov (United States)

    Ammersbach, Mélanie; Beaufrère, Hugues; Gionet Rollick, Annick; Tully, Thomas

    2015-03-01

    Limited plasma biochemical information is available in Strigiformes. Only one study investigated the agreement between a point-of-care with a reference laboratory analyzer for biochemistry variables in birds. The objective was to report reference intervals (RI) for plasma biochemistry variables in Strigiformes, and to assess agreement between the Abaxis Vetscan V2 and Roche Cobas c501. A prospective study was designed to assess plasma biochemistry RI for concentration of calcium, phosphorus, total protein, albumin, globulin, glucose, bilirubin, uric acid, bile acids, sodium, potassium, and chloride, and activities of AST, GGT, CK, amylase, lipase, LDH, and GLDH. In addition, the agreement between the Vetscan and the Cobas in owl species was assessed. A total of 190 individuals were sampled belonging to 12 Strigiformes species including Barn Owls, Barred Owls, Great Horned Owls, Eurasian Eagle Owls, Spectacled Owls, Eastern Screech Owls, Long-Eared Owls, Short-Eared Owls, Great Gray Owls, Snowy Owls, Northern Saw-Whet Owls, and Northern Hawk-Owls. Order-, species-, and method-specific RI were determined on both analyzers. Although Vetscan data were not equivalent to the Cobas, 4 analytes (glucose, AST, CK, and total protein, with correction for bias) were within acceptable agreement, 3 analytes (uric acid, calcium, and phosphorus) were within close agreement, and the remaining analytes were in strong disagreement. Species-specific differences were observed notably for the concentration of glucose in Barn Owls and electrolytes in Northern Saw-Whet Owls. Overall, this study suggests that the Vetscan has acceptable clinical performance in Strigiformes for some analytes and highlights discrepancies for several analytes. © 2015 American Society for Veterinary Clinical Pathology.

  2. Prevalence of human papillomavirus in 5,072 consecutive cervical SurePath samples evaluated with the Roche cobas HPV real-time PCR assay

    DEFF Research Database (Denmark)

    Preisler, Sarah; Rebolj, Matejka; Untermann, Anette

    2013-01-01

    of the present study, Horizon, was to assess the prevalence of high-risk HPV infections in an area with a high background risk of cervical cancer, where women aged 23-65 years are targeted for cervical screening. We collected 6,258 consecutive cervical samples from the largest cervical screening laboratory......-29 years and 10% in women aged 60-65 years. HC2 assay was positive in 20% of samples, and cytology was abnormal (≥ atypical squamous cells of undetermined significance) for 7% samples. When only samples without recent abnormalities were taken into account, 24% tested positive on cobas, 19% on HC2, and 5...

  3. Tipo de respuesta según el genotipado del virus del papiloma humano según cobas 4800 en las lesiones asc-us HPV positivas

    OpenAIRE

    Kanjou Augé, Nadwa

    2016-01-01

    Objetivos: Evaluar el riesgo de patología subyacente en las pacientes ASC-US HPV positivas de nuestra área de influencia analizadas por el método COBAS 4800. Se estudió el riesgo de CIN2+ en el momento del diagnóstico de las mujeres ASC-US HPV positivas según el genotipo del virus del papiloma: HPV16, HPV18 ( ambos incluyendo coinfecciones) u otros HPV de alto riesgo (HR-HPV). El objetivo es detectar aquellas mujeres con citologías ASC-US HPV positivo con un mayor riesgo de progresión y por l...

  4. Fluorimetric methods for the measurement of intermediate metabolites (lactate, pyruvate, alanine, beta-hydroxybutyrate, glycerol) using a COBAS FARA centrifugal analyser.

    Science.gov (United States)

    Monti, L D; Sandoli, P E; Costa, S; Phan, V C; Piatti, P M

    1993-01-01

    Intermediate products of the metabolism of glucose, fat and amino-acid are important in the evaluation of such metabolic disorders as diabetes mellitus, liver disease and metabolic acidosis. In the present study, methods for the measurement of intermediate metabolites (lactate, pyruvate, alanine, beta-hydroxybutyrate and glycerol) have been adapted to a fast centrifugal analyzer: the COBAS FARA. Correlation coeffcients rangedfrom 0.90 to 0.99, compared to established manual spectrophotometric methods. Within-run coeffcients of variation (CVs) ranged between 2.9 and 8.8% at low levels, between 1.5 and 5.7% at medium levels and between 1.2 and 5.6% at high levels. Between-run CVs were between 4.0 and 15.0% at low levels, between 1.7 and 7.0% at medium levels and between 1.3 and 2.7% at high levels. These fluorimetric assays for the determination of intermediate metabolites on COBAS FARA (Roche) have a good sensitivity and precision, are less costly than manual methods and can be used on a routine basis.

  5. Transfusion transmittable infections - Seroprevalence among blood donors in a tertiary care hospital of Delhi

    Directory of Open Access Journals (Sweden)

    Sangeeta Pathak

    2013-01-01

    Full Text Available Context: Transfusion transmittable infections (TTI continue to be a major threat to safe transfusion practices. Blood is one of the major sources of transmission of infectious diseases viz. human immunodeficiency virus (HIV, hepatitis B virus (HBV, hepatitis C virus (HCV, syphilis, malaria, and many other infections in India. Screening assays for the infectious diseases with excellent sensitivity and specificity helps to enhance the safety of the blood transfusions reducing the diagnostic window period as much as possible. Aims: The present study was designed to determine the seroprevalence of TTIs viz., HIV, HCV, and HBV, among the blood donors in Max Super Specialty Hospital, New Delhi, India based on dual testing strategy using high sensitive screening assays such as enhanced chemiluminescence assay and nucleic acid testing (NAT. Materials and Methods: A total of 41207 blood units collected from the donors (both voluntary and replacement donors were screened for the TTI s, viz., anti HIV 1 and 2 antibody, anti HCV antibody, anti HBcore antibody, and HBsAg by enhanced chemiluminescence assay on VITROS ® ECiQ immunodiagnostics system. NAT was performed using Roche Cobas ® TaqScreen MPX assay, which can detect simultaneously HIV 1 (groups M and O, HIV-2, HCV, and HBV on Roche Cobas ® s201 system. Results: The seroprevalence of HIV, HBsAg, anti HBcore antibody, and HCV based on enhanced chemiluminescence assay was found to be 0.25, 0.2, 7.06, and 0.7%, respectively. A total number of 6587 samples from July 2010 to December 2010 were tested on NAT, of which 3 samples were reactive for HBV in NAT; this was missed by enhanced chemiluminescence assay. Conclusions: Based on the seroprevalence study of infectious diseases viz., HIV, HBV, and HCV, we conclude that screening of blood and blood components by dual testing strategy using high sensitivity serological assay like enhanced chemiluminescence technology and NAT helps in detecting the

  6. [Evolution of residual risk for HIV, HCV and HBV, from 1999 to 2010, in blood donations of the Centro Hospitalar S. João, EPE, Porto, Portugal].

    Science.gov (United States)

    Koch, Carmo; Araújo, Fernando

    2013-01-01

    Monitoring the residual risk of transfusion-transmitted viral infections is important to evaluate the improvement achieved in the blood donation safety and to adopt policies to reduce risks. The present study calculates the incidence of the key infectious diseases, human immunodeficiency virus (HIV), hepatitis B virus (HBV) and hepatitis C virus (HCV) as well as the residual risk of transfusion-transmitted viral infections, during twelve years, 1999 through 2010. Data were analyzed over 3 periods of 4 years (1999-2002, 2003-2006 and 2007-2010). The risk estimates were compared to those previously obtained for blood donations occurred between 1991 and 1998. The study included 209 640 blood donations, from 42 634 regular, volunteers and unpaid donors. The residual risk of transfusion-transmitted infection per million donations was calculated, for each virus, through mathematical model "Incidence rate/window period", described by Schreiber et al. All donations were screened according to Portuguese legislation. In January 2001, the nucleic acid testing in minipool was implemented on all blood donations, for screening simultaneously HIV-1 and HCV ribonucleic acid (RNA) (Cobas Amplicor Ampliscreen-Roche©). This test was replaced, in January 2007, by the simultaneous screening of HBV deoxyribonucleic acid, HCV RNA and HIV-1/HIV-2 RNA, in minipool (Cobas Taqscreen MPX Test-Roche©). The residual risk of transmitting viral infections during the transfusion of blood components is very small and has declined over the years. After the implementation of the nucleic acid testing in minipool for the three viruses, the risk of giving blood during an infectious window period was estimated as follows: for human immunodeficiency virus, 1 in 1.67 million, for hepatitis C virus 1 in 3.33 million and for hepatitis B virus 1 in 526 000. During the 12 years under study, we found a decrease in residual risk for the three viruses, by a factor around five for human immunodeficiency virus

  7. Analytical characteristics and comparative evaluation of Aptima HCV quant Dx assay with the Abbott RealTime HCV assay and Roche COBAS AmpliPrep/COBAS TaqMan HCV quantitative test v2.0.

    Science.gov (United States)

    Worlock, A; Blair, D; Hunsicker, M; Le-Nguyen, T; Motta, C; Nguyen, C; Papachristou, E; Pham, J; Williams, A; Vi, M; Vinluan, B; Hatzakis, A

    2017-04-04

    The Aptima HCV Quant Dx assay (Aptima assay) is a fully automated quantitative assay on the Panther® system. This assay is intended for confirmation of diagnosis and monitoring of HCV RNA in plasma and serum specimens. The purpose of the testing described in this paper was to evaluate the performance of the Aptima assay. The analytical sensitivity, analytical specificity, precision, and linearity of the Aptima assay were assessed. The performance of the Aptima assay was compared to two commercially available HCV assays; the Abbott RealTime HCV assay (Abbott assay, Abbott Labs Illinois, USA) and the Roche COBAS Ampliprep/COBAS Taqman HCV Quantitative Test v2.0 (Roche Assay, Roche Molecular Systems, Pleasanton CA, USA). The 95% Lower Limit of Detection (LoD) of the assay was determined from dilutions of the 2nd HCV WHO International Standard (NIBSC 96/798 genotype 1) and HCV positive clinical specimens in HCV negative human plasma and serum. Probit analysis was performed to generate the 95% predicted detection limits. The Lower Limit of Quantitation (LLoQ) was established for each genotype by diluting clinical specimens and the 2nd HCV WHO International Standard (NIBSC 96/798 genotype 1) in HCV negative human plasma and serum. Specificity was determined using 200 fresh and 536 frozen HCV RNA negative clinical specimens including 370 plasma specimens and 366 serum specimens. Linearity for genotypes 1 to 6 was established by diluting armored RNA or HCV positive clinical specimens in HCV negative serum or plasma from 8.08 log IU/mL to below 1 log IU/mL. Precision was tested using a 10 member panel made by diluting HCV positive clinical specimens or spiking armored RNA into HCV negative plasma and serum. A method comparison was conducted against the Abbott assay using 1058 clinical specimens and against the Roche assay using 608 clinical specimens from HCV infected patients. In addition, agreement between the Roche assay and the Aptima assay using specimens with low

  8. Precision, accuracy, cross reactivity and comparability of serum indices measurement on Abbott Architect c8000, Beckman Coulter AU5800 and Roche Cobas 6000 c501 clinical chemistry analyzers.

    Science.gov (United States)

    Nikolac Gabaj, Nora; Miler, Marijana; Vrtarić, Alen; Hemar, Marina; Filipi, Petra; Kocijančić, Marija; Šupak Smolčić, Vesna; Ćelap, Ivana; Šimundić, Ana-Maria

    2018-04-25

    The aim of our study was to perform verification of serum indices on three clinical chemistry platforms. This study was done on three analyzers: Abbott Architect c8000, Beckman Coulter AU5800 (BC) and Roche Cobas 6000 c501. The following analytical specifications were verified: precision (two patient samples), accuracy (sample with the highest concentration of interferent was serially diluted and measured values compared to theoretical values), comparability (120 patients samples) and cross reactivity (samples with increasing concentrations of interferent were divided in two aliquots and remaining interferents were added in each aliquot. Measurements were done before and after adding interferents). Best results for precision were obtained for the H index (0.72%-2.08%). Accuracy for the H index was acceptable for Cobas and BC, while on Architect, deviations in the high concentration range were observed (y=0.02 [0.01-0.07]+1.07 [1.06-1.08]x). All three analyzers showed acceptable results in evaluating accuracy of L index and unacceptable results for I index. The H index was comparable between BC and both, Architect (Cohen's κ [95% CI]=0.795 [0.692-0.898]) and Roche (Cohen's κ [95% CI]=0.825 [0.729-0.922]), while Roche and Architect were not comparable. The I index was not comparable between all analyzer combinations, while the L index was only comparable between Abbott and BC. Cross reactivity analysis mostly showed that serum indices measurement is affected when a combination of interferences is present. There is heterogeneity between analyzers in the hemolysis, icteria, lipemia (HIL) quality performance. Verification of serum indices in routine work is necessary to establish analytical specifications.

  9. SurePath Specimens Versus ThinPrep Specimen Types on the COBAS 4800 Platform: High-Risk HPV Status and Cytology Correlation in an Ethnically Diverse Bronx Population.

    Science.gov (United States)

    Naeem, R C; Goldstein, D Y; Einstein, Mark H; Ramos Rivera, G; Schlesinger, K; Khader, S N; Suhrland, M; Fox, A S

    2017-08-01

    To compare the cytologic preparations of 130 cervical specimens (from women of various ethnicities at high risk for human papillomavirus [HPV] infection) using the SurePath (SP) collection system with specimens gathered using the ThinPrep (TP) system, as processed on the Cobas 4800 analyzer, to determine which collection method more accurately identifies HPV infection. In our prospective study, specimens were collected from 130 women of various ethnicities residing in or near Bronx County, NY. The SP-collected specimen was first processed for cytologic findings; if clinical HPV testing was requested on that specimen, it was tested using Hybrid Capture II (HC2) methodology. We tested the remnant SP-collected cell concentrate using the Cobas analyzer. Then, the TP-collected and SP-collected specimens were tested in the same run on that analyzer, and the results were compared. We also compared the results with the concurrent cytologic findings. The results were concordant for overall HR-HPV status in 93.8% of cases. Also, a statistically significant lower cycle threshold value was observed with Cobas testing of specimen concentrates tested via the BD SurePath Pap Test (P = .001), suggesting higher sensitivity compared with specimens tested via the ThinPrep Pap Test. Cobas 4800 HPV testing of SP-collected specimen concentrates yields comparable results to TP-collected specimen concentrates. Based on the limited data that we derived, SP collection may be a more favorable methodology than TP collection for HPV testing of individuals at high risk in our ethnically diverse, urban patient population. © American Society for Clinical Pathology, 2017. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com

  10. An evaluation of clinical performance of FTA cards for HPV 16/18 detection using cobas 4800 HPV Test compared to dry swab and liquid medium.

    Science.gov (United States)

    Dong, Li; Lin, Chunqing; Li, Li; Wang, Margaret; Cui, Jianfeng; Feng, Ruimei; Liu, Bin; Wu, Zeni; Lian, Jia; Liao, Guangdong; Chen, Wen; Qiao, Youlin

    2017-09-01

    Effective dry storage and transport media as an alternative to conventional liquid-based medium would facilitate the accessibility of women in the low-resource settings to human papillomavirus (HPV)- based cervical cancer screening. To evaluate analytical and clinical performance of indicating FTA™ Elute Cartridge (FTA card) for the detection of HPV16/18 and cervical precancerous lesions and cancer compared to dry swab and liquid medium. Ninety patients with abnormal cytology and/or HPV infection were included for analysis. Three specimens of cervical exfoliated cells from each woman were randomly collected by FTA card, dry swab or liquid-based medium prior to colposcopy examination. The subsequent HPV DNA tests were performed on cobas 4800 HPV platform. High-risk HPV (hrHPV) positivity rate was 63.3%, 62.2% and 65.6% for samples collected by FTA card, dry swab and liquid medium, respectively. The overall agreements and kappa values for the detection of hrHPV, HPV 16 and HPV 18 between FTA card and liquid-based medium were 88.9% (κ=0.76), 97.8% (κ=0.94) and 100% (κ=1.0),respectively; between FTA card and dry swab were 92.1% (κ=0.83), 94.5% (κ=0.87) and 100% (κ=1.0), respectively. The performances of hrHPV tested by FTA card, dry swab, and liquid-based medium for detecting CIN2+ were comparable in terms of the sensitivity and specificity. The specificity of detection of CIN2+ by HPV16/18 increased by approximately 40% compared to hrHPV for any medium albeit at cost of a moderate loss of sensitivity. Dry medium might offer an alternative to conventional liquid-based medium in the HPV-based cervical cancer screening program especially in low-resource settings but still needs further evaluation. Copyright © 2017. Published by Elsevier B.V.

  11. Comparison of the Abbott RealTime High Risk HPV test and the Roche cobas 4800 HPV test using urine samples.

    Science.gov (United States)

    Lim, Myong Cheol; Lee, Do-Hoon; Hwang, Sang-Hyun; Hwang, Na Rae; Lee, Bomyee; Shin, Hye Young; Jun, Jae Kwan; Yoo, Chong Woo; Lee, Dong Ock; Seo, Sang-Soo; Park, Sang-Yoon; Joo, Jungnam

    2017-05-01

    Human papillomavirus (HPV) testing based on cervical samples is important for use in cervical cancer screening. However, cervical sampling is invasive. Therefore, non-invasive methods for detecting HPV, such as urine samples, are needed. For HPV detection in urine samples, two real-time PCR (RQ-PCR) tests, Roche cobas 4800 test (Roche_HPV; Roche Molecular Diagnostics) and Abbott RealTime High Risk HPV test (Abbott_HPV; Abbott Laboratories) were compared to standard cervical samples. The performance of Roche_HPV and Abbott_HPV for HPV detection was evaluated at the National Cancer Center using 100 paired cervical and urine samples. The tests were also compared using urine samples stored at various temperatures and for a range of durations. The overall agreement between the Roche_HPV and Abbott_HPV tests using urine samples for any hrHPV type was substantial (86.0% with a kappa value of 0.7173), and that for HPV 16/18 was nearly perfect (99.0% with a kappa value of 0.9668). The relative sensitivities (based on cervical samples) for HPV 16/18 detection using Roche_HPV and Abbott_HPV with urine samples were 79.2% (95% CI; 57.9-92.9%) and 81.8% (95% CI; 59.7-94.8%), respectively. When the cut-off C T value for Abbott_HPV was extended to 40 for urine samples, the relative sensitivity of Abbott_HPV increased to 91.7% from 81.8% for HPV16/18 detection and to 87.0% from 68.5% for other hrHPV detection. The specificity was not affected by the change in the C T threshold. Roche_HPV and Abbott_HPV showed high concordance. However, HPV DNA detection using urine samples was inferior to HPV DNA detection using cervical samples. Interestingly, when the cut-off C T value was set to 40, Abbott_HPV using urine samples showed high sensitivity and specificity, comparable to those obtained using cervical samples. Fully automated DNA extraction and detection systems, such as Roche_HPV and Abbott_HPV, could reduce the variability in HPV detection and accelerate the standardization of HPV

  12. High-risk Human Papillomavirus Determination in Formalin-fixed, Paraffin-embedded Cervical Tissue Using the Roche Cobas 4800 System: A Comparative Study With Liquid-based Cytology.

    Science.gov (United States)

    Tardío, Juan C; Cambero, Olivia; Sánchez-Estévez, Carolina; Sánchez-García, Ana B; Angulo, Fernando; Moreno, Amalia

    2017-11-14

    Roche cobas 4800 human papillomavirus (HPV) test is an automated real-time polymerase chain reaction-based system that allows the simultaneous detection of 14 human papillomavirus high-risk (HR-HPV) genotypes. This test is Food and Drug Administration approved since 2011 for HPV determination in liquid-based cytologic samples, but a clinically validated technique for formalin-fixed, paraffin-embedded (FFPE) tissue specimens is presently not commercially available. In our laboratory, we have developed an HPV detection procedure in FFPE tissue by cobas 4800 HPV test. In order to validate our method, we retrospectively studied 165 FFPE cervical biopsy and conization specimens with varied diagnoses from our files. In 50 of them, we contrasted the results with those obtained from simultaneous liquid-based cytologies from the same patients. Finally, seeking the possible complementary clinical usefulness of the procedure, we compared the HPV genotypes detected in cervical intraepithelial neoplasia grade 1 (CIN1)-diagnosed biopsies from 20 patients with a subsequent high-grade CIN (CIN2+) diagnosis with those from another group of 20 patients without a posterior CIN2+ diagnosis. Eighty-seven percent of the assays provided informative results. HR-HPV was detected in 28 of 32 (88%) invasive cervical squamous carcinomas. Coincidental HR-HPV genotypes were obtained in 32 of 50 (64%) cases with simultaneous cervical biopsy and liquid-based cytologic samples. A significant higher risk of progression to CIN2+ was found when HPV16 (P=0.022) or any HR-HPV genotype (P=0.037) was detected in CIN1 biopsies. The reported procedure provides an automated, technically time-saving, easy to integrate into laboratory routine, and reliable method of HR-HPV determination in FFPE specimens.

  13. Sensitivity and specificity of a new automated system for the detection of hepatitis B virus, hepatitis C virus, and human immunodeficiency virus nucleic acid in blood and plasma donations.

    Science.gov (United States)

    Galel, Susan A; Simon, Toby L; Williamson, Phillip C; AuBuchon, James P; Waxman, Dan A; Erickson, Yasuko; Bertuzis, Rasa; Duncan, John R; Malhotra, Khushbeer; Vaks, Jeffrey; Huynh, Nancy; Pate, Lisa Lee

    2018-03-01

    Use of nucleic acid testing (NAT) in donor infectious disease screening improves transfusion safety. Advances in NAT technology include improvements in assay sensitivity and system automation, and real-time viral target discrimination in multiplex assays. This article describes the sensitivity and specificity of cobas MPX, a multiplex assay for detection of human immunodeficiency virus (HIV)-1 Group M, HIV-2 and HIV-1 Group O RNA, HCV RNA, and HBV DNA, for use on the cobas 6800/8800 Systems. The specificity of cobas MPX was evaluated in samples from donors of blood and source plasma in the United States. Analytic sensitivity was determined with reference standards. Infectious window periods (WPs) before NAT detectability were calculated for current donor screening assays. The specificity of cobas MPX was 99.946% (99.883%-99.980%) in 11,203 blood donor samples tested individually (IDT), 100% (99.994%-100%) in 63,012 donor samples tested in pools of 6, and 99.994% (99.988%-99.998%) in 108,306 source plasma donations tested in pools of 96. Seven HCV NAT-yield donations and one seronegative occult HBV infection were detected. Ninety-five percent and 50% detection limits in plasma (IU/mL) were 25.7 and 3.8 for HIV-1M, 7.0 and 1.3 for HCV, and 1.4 and 0.3 for HBV. The HBV WP was 1 to 4 days shorter than other donor screening assays by IDT. cobas MPX demonstrated high specificity in blood and source plasma donations tested individually and in pools. High sensitivity, in particular for HBV, shortens the WP and may enhance detection of occult HBV. © 2017 The Authors Transfusion published by Wiley Periodicals, Inc. on behalf of AABB.

  14. Evaluation of the Aptima HBV Quant assay vs. the COBAS TaqMan HBV test using the high pure system for the quantitation of HBV DNA in plasma and serum samples.

    Science.gov (United States)

    Schalasta, Gunnar; Börner, Anna; Speicher, Andrea; Enders, Martin

    2018-03-28

    Proper management of patients with chronic hepatitis B virus (HBV) infection requires monitoring of plasma or serum HBV DNA levels using a highly sensitive nucleic acid amplification test. Because commercially available assays differ in performance, we compared herein the performance of the Hologic Aptima HBV Quant assay (Aptima) to that of the Roche Cobas TaqMan HBV test for use with the high pure system (HPS/CTM). Assay performance was assessed using HBV reference panels as well as plasma and serum samples from chronically HBV-infected patients. Method correlation, analytical sensitivity, precision/reproducibility, linearity, bias and influence of genotype were evaluated. Data analysis was performed using linear regression, Deming correlation analysis and Bland-Altman analysis. Agreement between the assays for the two reference panels was good, with a difference in assay values vs. target 0.98). The two assays had similar bias and precision across the different genotypes tested at low viral loads (25-1000 IU/mL). Aptima has a performance comparable with that of HPS/CTM, making it suitable for use for HBV infection monitoring. Aptima runs on a fully automated platform (the Panther system) and therefore offers a significantly improved workflow compared with HPS/CTM.

  15. [Detection of RAS genes mutation using the Cobas® method in a private laboratory of pathology: Medical and economical study in comparison to a public platform of molecular biology of cancer].

    Science.gov (United States)

    Albertini, Anne-Flore; Raoux, Delphine; Neumann, Frédéric; Rossat, Stéphane; Tabet, Farid; Pedeutour, Florence; Duranton-Tanneur, Valérie; Kubiniek, Valérie; Vire, Olivier; Weinbreck, Nicolas

    In France, determination of the mutation status of RAS genes for predictive response to anti-EGFR targeted treatments is carried out by public platforms of molecular biology of cancer created by the French National Cancer Institute. This study aims to demonstrate the feasibility of these analyses by a private pathology laboratory (MEDIPATH) as per the requirements of accreditation. We retrospectively studied the mutation status of KRAS and NRAS genes in 163 cases of colorectal metastatic cancer using the Cobas ® technique. We compared our results to those prospectively obtained through pyrosequencing and allelic discrimination by the genetic laboratory of solid tumors at the Nice University Hospital (PACA-EST regional platform). The results of both series were identical: 98.7% positive correlation; negative correlation of 93.1%; overall correlation of 95.7% (Kappa=0.92). This study demonstrates the feasibility of molecular analysis in a private pathology laboratory. As this practice requires a high level of guarantee, its accreditation, according to the NF-EN-ISO15189 quality compliance French standard, is essential. Conducting molecular analysis in this context avoids the steps of routing the sample and the result between the pathology laboratory and the platform, which reduces the overall time of rendering the result. In conclusion, the transfer of some analysis from these platforms to private pathology laboratories would allow the platforms to be discharged from a part of routine testing and therefore concentrate their efforts to the development of new analyses constantly required to access personalized medicine. Copyright © 2017. Published by Elsevier Masson SAS.

  16. Screening tests for Chlamydia trachomatis or Neisseria gonorrhoeae using the cobas 4800 PCR system do not require a second test to confirm: an audit of patients issued with equivocal results at a sexual health clinic in the Northwest of England, U.K.

    Science.gov (United States)

    Hopkins, Mark J; Smith, Godfrey; Hart, Ian J; Alloba, Fath

    2012-11-01

    To assess the clinical utility of supplementary PCRs following a positive cobas 4800 CT/NG PCR screening test result. Laboratory reports, for Chlamydia trachomatis or Neisseria gonorrhoeae, issued to genitourinary medicine patients between April 2010 and April 2011 were reviewed retrospectively. Positive reports were routinely confirmed by supplementary PCRs and N gonorrhoeae culture. Clinical records of patients with unconfirmed positive (equivocal) reports were retrieved to determine if the infection was confirmed by a second sample obtained at patient recall and the impact of this process on antibiotic management. Over 15 000 patients were tested during the study period. The prevalence of chlamydia and gonorrhoea was 972 (5.75%) and 76 (0.50%), respectively. A further 78 chlamydia and 2 gonorrhoea equivocal reports were issued. Only 56 (72%) patients with an equivocal chlamydia report returned to the clinic, and of these, only 41 (73%) gave a second sample to retest. Positive predictive value (PPV) of the PCR screening test was calculated at 98.0% and 97.5% for detection of chlamydia infection from urine and rectal swabs, respectively. Most patients accepted antibiotic treatment before their infection status had been confirmed. Prevalence of gonorrhoea infection was low but the PPV of the screening PCR in urine specimens remained high (98.75%). Equivocal reports introduce delays to patient management, while the risk of unnecessary antibiotic therapy appears acceptable to most patients. The cobas 4800 CT/NG PCR screening assay can achieve UK testing standards (PPV >90%) for chlamydia, and low prevalence gonorrhoea in urine without supplementary tests. A patient-led confirmation algorithm is proposed.

  17. Performance Evaluation of the Bioneer AccuPower® HIV-1 Quantitative RT-PCR kit: Comparison with the Roche COBAS® AmpliPrep/COBAS TaqMan® HIV-1 Test Ver.2.0 for Quantification of HIV-1 Viral Load in Indonesia.

    Science.gov (United States)

    Kosasih, Agus Susanto; Sugiarto, Christine; Hayuanta, Hubertus Hosti; Juhaendi, Runingsih; Setiawan, Lyana

    2017-08-08

    Measurement of viral load in human immunodeficiency virus type 1 (HIV-1) infected patients is essential for the establishment of a therapeutic strategy. Several assays based on qPCR are available for the measurement of viral load; they differ in sample volume, technology applied, target gene, sensitivity and dynamic range. The Bioneer AccuPower® HIV-1 Quantitative RT-PCR is a novel commercial kit that has not been evaluated for its performance. This study aimed to evaluate the performance of the Bioneer AccuPower® HIV-1 Quantitative RT-PCR kit. In total, 288 EDTA plasma samples from the Dharmais Cancer Hospital were analyzed with the Bioneer AccuPower® HIV-1 Quantitative RT-PCR kit and the Roche COBAS? AmpliPrep/COBAS® TaqMan® HIV-1 version 2.0 (CAP/CTM v2.0). The performance of the Bioneer assay was then evaluated against the Roche CAP/CTM v2.0. Overall, there was good agreement between the two assays. The Bioneer assay showed significant linear correlation with CAP/CTM v2.0 (R2=0.963, plaboratories.

  18. One window-period donation in two years of individual donor-nucleic acid test screening for hepatitis B, hepatitis C and human immunodeficiency virus

    Directory of Open Access Journals (Sweden)

    Jose Eduardo Levi

    2013-06-01

    Full Text Available Objective: To describe general data on nucleic acid/serology testing and report the first hepatitis B-nucleic acid testing yield case of an immunized donor in Brazil. Methods: A total of 24,441 donations collected in 2010 and 2011 were submitted to individual nucleic acid testing for hepatitis B, hepatitis C and human immunodeficiency virus using the TaqMan® MPX kit (Roche on the Cobas s201 platform, in addition to routine screening for serological markers. Nucleic acid testing-reactive donations were further evaluated by real-time polymerase chain reaction using Cobas AmpliPrep/Cobas TaqMan hepatitis B virus, hepatitis C virus and human immunodeficiency virus tests. Results: Thirty-two donations were reactive by nucleic acid testing, 31 were also serologically reactive and one first-time donor was identified as having hepatitis B in the window period. Follow-up samples showed increasing titers of anti-HBs rising from 19 UI/mL in the index donation to 109 IU/mL seven months later attributable to his vaccination history. Curiously, this donor was never reactive for HbsAg nor for anti-HBc. In the yield donation, he was concomitantly reactive for syphilis (enzyme immunoassay and fluorescent treponemal antibody-absorption; venereal disease research laboratory non-reactive. Overall, six donors (0.02% were characterized as occult hepatitis B. A total of 35% of the confirmed (recombinant immunoblot assay positive hepatitis C donations were nucleic acid testing non-reactive and no human immunodeficiency virus "elite controller" was identified. Conclusion: The yield rate (1:24,441; 95% confidence interval: 1:9,537 - 1:89,717 contrasts to the North American rate (1:410,540 donations and strongly advocates the adoption of nucleic acid testing for hepatitis B in Brazil despite the increasing rate of anti-HBs reactive subjects due to the successful immunization program.

  19. On Coba and Cocok: youth-led drug-experimentation in Eastern Indonesia.

    Science.gov (United States)

    Hardon, Anita; Idrus, Nurul Ilmi

    2014-01-01

    The everyday lives of contemporary youths are awash with drugs to boost pleasure, moods, sexual performance, vitality, appearance and health. This paper examines pervasive practices of chemical 'self-maximization' from the perspectives of youths themselves. The research for this paper was conducted among male, female and transgender (male to female, so-called waria) sex workers in Makassar, Indonesia. It presents the authors' ethnographic findings on how these youths experiment with drugs to achieve their desired mental and bodily states: with the painkiller Somadril to feel happy, confident and less reluctant to engage in sex with clients, and contraceptive pills and injectable hormones to feminize their male bodies and to attract customers. Youths are extremely creative in adjusting dosages and mixing substances, with knowledge of the (mostly positive) 'lived effects' of drugs spreading through collective experimentation and word of mouth. The paper outlines how these experimental practices differ from those that have become the gold standard in biomedicine.

  20. UJI COBA PENANGKAPAN MENGGUNAKAN AYUNAN DENGAN BENTUK YANG BERBEDA ((EXPERIMENTAL FISHING USING AYUNAN WITH DIFFERENT FORMS

    Directory of Open Access Journals (Sweden)

    Irhamsyah Irhamsyah

    2017-02-01

    Bamboo and rattan as materials to make the ayunan has a weakness because odor (smell is not good (bangai and therefore contributes to the catch. To overcome this weakness it is advisable to replace the wire with the basic material.

  1. UJI COBA PERANGKAP UDANG DENGAN BENTUK YANG BERBEDA (EXPERIMENTAL FISHING WITH TRAP PRAWN DIFFERENT FORM

    Directory of Open Access Journals (Sweden)

    Irhamsyah Irhamsyah

    2016-06-01

    Full Text Available Penelitian ini bertujuan untuk  mengetahui perbedaan hasil tangkapan udang dari tamba dan ayunan modifikasi dan hasil tangkapan selain udang.  Dari hasil penelitian diperoleh perlakuan A (tamba diperoleh hasil tangkapan udang sebanyak 52 ekor, dengan berat total 2.210 gram.  Perlakuan B (ayunan modifikasi lantai bambu, diperoleh hasil tangkapan udang sebanyak 29 ekor, dengan berat total  180 gram.  Total hasil tangkapan udang dengan menggunakan tamba dan ayunan modifikasi lantai bambu selama 16 hari pengamatan adalah 81 ekor dengan berat total 2.390 gram.  Jenis hasil tangkapan utama yaitu Udang Galah (Macrobrachium rosenbergii de Man dengan hasil tangkapan sampingan adalah ikan Lundu (Mystus gulio dan  ikan Sapu-Sapu (Hypostomus plecostomus. This study aims to (1 know the difference between the catch of prawns from tamba and ayunan, and (2 to determine the catch other than prawn. The results, treatment A (tamba gained as much as 52 prawns, with a total weight of 2,210 grams. Treatment B (ayunan modifications bamboo flooring, gained as much as 29 prawns, with a total weight of 180 grams. Total catch of prawns using swing modifications and addi bamboo flooring for 16 days of observation was 81 prawns with a total weight of 2,390 grams. Main types of catches fresh water prawn (Macrobrachium rosenbergii de Man with a side of the catch is Lundu (Mystus Gulio and Sapu-sapu (Hypostomus plecostomus.

  2. UJI COBA PEMULIHAN GIZI BURUK CARA KLINIK GIZI PUSLITBANG GIZI DI POSYANDU

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    Djoko Kartono

    2012-11-01

    Full Text Available Trial The Management of Severe Malnourished Children of Nutrition Clinic Method, The Nutrition Research and Development Centre at Village Level.Background: Managerrent of severe malnutrition recommended by WHO should be in hospital. For family with severe malnourished child, generally poor, hospitalization means spend a lot of money. The alternative method is the out patient management developed by Nutrition Clinic of the Nutrition Research ard Development Centre.Objectives: To study the effectiveneess of management for severe malnourished of Nutrition Clinic method in village level (posyandu by village cadre.Methods: The study was carried out at 4 sub-districts in Bogor and Sukabumi, West Java. Sixty under-five children for group 1 and 60 for group 2 were selected. Three to five posyandu's cadres were selected in each village. Visit schedule to posyandu for group 1 was similar to that Nutrition Clinic while group 2 was every 1 week. Nutrition package for group 1 and 2 was same. Data collection included body measurements, morbiddity and food consumption. Observation to the cadres performance include ownership and he use of guidance book.Results: Seven percent of children aged 6-11 months, 20% aged 12-17 months, 60% aged 18-35 months and 13% aged > 36 months. Around 30% of children had been grven fruit and porridge on the age 1-4 months old. Nutritional status improved variously depended on the nutritional indices. Energy consumption was low but protein consumption had reached the recommended allowance. Compliance to come to posyandu and nutrition package was high.Conclusions: Around 10% of cchildren had changed from under-weight to well-nourished, but most of severe malnourished children remained severe in 3 months. Stunted was over 75% and remained stunted in 3 months. Wasted was 50% and began to decline in 3 months. The average of weight increment in 3 months was 0,6 kg. Cadre could give simple education to mothers using the available guidance book.Recommendations: To use wasted as an indicator in the evaluation of management of severe malnutrition. Active role of health Centre is needed to have maximum effect of the implementation of Nutrition Clinic method at village level.Key words: management, severe malnutrition, nutrition clinic, out-patient, village cadre.

  3. Studi dan Uji Coba Teknologi Bluetooth sebagai Alternatif Komunikasi Data Nirkabel

    OpenAIRE

    Yulia, Yulia; Santoso, Leo Willyanto

    2004-01-01

    In Bahasa Indonesia : Bluetooth adalah suatu teknologi baru yang mulai dikenal dan digunakan. Teknologi ini memberikan Perubahan yang signifikan terhadap peralatan elektronik yang kita gunakan. Jika kita melihat sekeliling kita dimana keyboard dihubungkan pada komputer. Demikian juga halnya dengan printer, mouse, monitor dan lain sebagainya. Semua peralatan itu dihubungkan dengan menggunakan kabel. Akibatnya terjadi masalah banyak kabel yang dibutuhkan di kantor, rumah atau tempat-tempat...

  4. On Coba and Cocok: youth-led drug-experimentation in Eastern Indonesia

    NARCIS (Netherlands)

    Hardon, A.; Idrus, N.I.

    2014-01-01

    The everyday lives of contemporary youths are awash with drugs to boost pleasure, moods, sexual performance, vitality, appearance and health. This paper examines pervasive practices of chemical ‘self-maximization’ from the perspectives of youths themselves. The research for this paper was conducted

  5. STUDI DAN UJI COBA TEKNOLOGI BLUETOOTH SEBAGAI ALTERNATIF KOMUNIKASI DATA NIRKABEL

    Directory of Open Access Journals (Sweden)

    Yulia Yulia

    2004-01-01

    Full Text Available Bluetooth is a new emerging technology. This technology gives significant changes for electronic devices that we are using. If we look around, a keyboard is connected to a computer. So does a printer, a mouse, a monitor and so on. This condition creates a problem of so many scattered wires installed in the offices, houses and other places. Another problem is how to inspect the damaging or boken wires. In this paper, we will have a discussion on specific applications of bluetooth such as services provided by the bluetooth technology; bluetooth method - how bluetooth devices make connections in a piconet; as well as investigation on bluetooth protocol stack. Bluetooth has succesfully built easy connection among devices from many vendor without using cables, with less power dan money. By using bluetooth, we can build small network or Piconet, consisting of several devices without cables. Abstract in Bahasa Indonesia : Bluetooth adalah suatu teknologi baru yang mulai dikenal dan digunakan. Teknologi ini memberikan perubahan yang signifikan terhadap peralatan elektronik yang kita gunakan. Jika kita melihat sekeliling kita dimana keyboard dihubungkan pada komputer. Demikian juga halnya dengan printer, mouse, monitor dan lain sebagainya. Semua peralatan itu dihubungkan dengan menggunakan kabel. Akibatnya terjadi masalah banyak kabel yang dibutuhkan di kantor, rumah atau tempat-tempat lainnya. Masalah lain yang ditemui adalah bagaimana menelusuri kabel-kabel yang terpasang jika ada suatu kesalahan atau kerusakan. Bluetooth memperbaiki penggunaan teknologi kabel yang cenderung menyulitkan ini dengan cara menghubungkan beberapa peralatan tanpa menggunakan kabel. Pada karya tulis ini, dibahas aplikasi spesifik bluetooth, antara lain servis-servis apa saja yang disediakan oleh teknologi bluetooth; cara kerja bluetooth yaitu bagaimana bluetooth device melakukan koneksi di dalam sebuah piconet serta bluetooth protocol stack. Bluetooth telah berhasil memudahkan koneksi antar beberapa alat dari berbagai vendor tanpa kabel dengan tenaga yang kecil serta biaya yang ringan. Dengan bluetooth dapat dibentuk sebuah jaringan kecil atau Piconet yang terdiri dari beberapa peralatan dan sekali lagi, tanpa memerlukan kabel. Kata kunci: Bluetooth, Bluetooth Protocol Stack, Piconet, Komunikasi data, Nirkabel.

  6. Analytical performance of the Hologic Aptima HBV Quant Assay and the COBAS Ampliprep/COBAS TaqMan HBV test v2.0 for the quantification of HBV DNA in plasma samples

    DEFF Research Database (Denmark)

    Schønning, Kristian; Johansen, Kim; Nielsen, Lone Gilmor

    2018-01-01

    than in CAPCTMv2. Only minor differences were observed between genotype A (N = 4; average difference -0.01 Log IU/mL), B (N = 8; -0.13 Log IU/mL), C (N = 8; -0.31 Log IU/mL), D (N = 25; -0.22 Log IU/mL), and E (N = 7; -0.03 Log IU/mL). Deming regression showed that the two tests were excellently...

  7. Comparison of the Hologic Aptima HIV-1 Quant Dx Assay to the Roche COBAS Ampliprep/COBAS TaqMan HIV-1 Test v2.0 for the quantification of HIV-1 RNA in plasma samples

    DEFF Research Database (Denmark)

    Schønning, Kristian; Johansen, Kim; Landt, Bodil

    2017-01-01

    load compared to the CAPCTMv2 was observed in Bland-Altman analysis, by Deming regression (Slope 1.13) and in dilution series of clinical samples. Precision evaluated using the Acrometrix Positive Controls was similar for the High Control (CV: 1.2% vs. 1.3%; Aptima assay vs. CAPCTMv2 test, respectively...

  8. UJI COBA PENYEMPROTAN ULV (ULV SPRAYING INSEKTISIDA BENDIOCARB 20 % (FICAM ULV TERHADAP VEKTOR DEMAM BERDARAH DENGUE Aedes aegypti

    Directory of Open Access Journals (Sweden)

    Hadi Suwasono

    2012-09-01

    Full Text Available A trial was conducted using ULV spraying of Bendiocarb 20% (Ficam ULV in Salatiga municipality at a dosage of 45 ml/ha and 75 ml/ha. The trial was conducted in the morning. Two cycles were implemented at an interval of 7 days, using a vehicle-mounted ULV generator. Results revealed no significant changes in mosquito population densitities, in any of the parameters observed.

  9. UJI COBA LARVISIDA SPHERIFIX (Bacillus sphaericus VCRC B 42 TERHADAP LARVA Anopheles sundaicus Di GERUMBUL KLACES, UJUNG ALANG - KABUPATEN CILACAP

    Directory of Open Access Journals (Sweden)

    Umi Widyastuti

    2012-09-01

    Full Text Available A biological larvicide spherifix containing Bacillus sphaericus VCRC B 42 was investigated against Anopheles sundaicus in Klaces hamlet, Cilacap regency. This study was conducted to determine the effectivity of spherifix on An. sundaicus larvae at a dosage of 2.5 kg/Ha. Observations were conducted one day before application of the larvicide, 24, 36, 48 hours, day 4, 7, and 14 after application. The larval reduction rates were calculated using the formula of Mulia et al, 1971, and a reduction of the results were 16.69 % after 24 hours, 20.95 % after 36 hours, 34.07 % after 48 hours, 65.08 % after 4 days, 85.98 % after 7 days, and 90.81 % after 14 days. B. sphaericus has capabilities to function as a biological larvicide.

  10. Uji Coba Alat Penghasil Asap Cair Skala Laboratorium dengan Bahan Pengasap Serbuk Gergaji Kayu Jati Sabrang atau Sungkai (Peronema canescens

    Directory of Open Access Journals (Sweden)

    Rodiah Nurbaya Sari

    2014-05-01

    energi yang dilepas dari pembentukan asap menjadi asap cair (- 476,45 kJ/kg asap, energi yang diserap air kondensor sebesar 2,1 kJ/kg air sehingga jumlah air bersuhu 30,4oC yang dibutuhkan untuk mengembunkan 1 kg asap menjadi asap cair dengan suhu pirolisis 316,7oC adalah sebanyak 226,88 liter. Kinerja alat adalah 6,98 g/(jam. m. Komponen dominan dalam asap cair yang dihasilkan adalah senyawa 1,2-benzenedicarboxylic acid, diethyl ester (C12H14O4 sebanyak 23,61%.

  11. Rekayasa Alat Penghasil Asap Cair untuk Produksi Ikan Asap 1. Uji Coba Alat Penghasil Asap Cair Skala Laboratorium

    Directory of Open Access Journals (Sweden)

    Rodiah Nurbaya Sari

    2006-04-01

    penelitian menunjukkan bahwa pada suhu pembakaran 200-250o C, tempurung kelapa dengan kadar air 11,40% menghasilkan asap cair sebanyak 48,10%, sisa pembakaran berupa arang sebanyak 31,33%, jumlah komponen yang hilang sebanyak 20,56% dengan kinerja alat sebesar 250,52 g/jam.m kondensor. Komponen terbanyak asap cair yang dihasilkan adalah senyawa 9-octadecenoic acid (Z-, tetradecyl ester (C32H62O2 sebanyak 71,68%. Pada suhu pembakaran 300–450oC asap cair yang dihasilkan sebanyak 48,66%, sisa pembakaran berupa arangsebanyak 26,30%, komponen asap yang hilang sebanyak 25,04% dengan kinerja alat 253,44 g/jam.m kondensor. Pada suhu tersebut komponen terbanyak asap cair adalah senyawa 2-lauro-1,3-didecoinyaitu 37,53%.

  12. Enhancing case definitions for surveillance of human monkeypox in the Democratic Republic of Congo.

    Directory of Open Access Journals (Sweden)

    Lynda Osadebe

    2017-09-01

    Full Text Available Human monkeypox (MPX occurs at appreciable rates in the Democratic Republic of Congo (DRC. Infection with varicella zoster virus (VZV has a similar presentation to that of MPX, and in areas where MPX is endemic these two illnesses are commonly mistaken. This study evaluated the diagnostic utility of two surveillance case definitions for MPX and specific clinical characteristics associated with laboratory-confirmed MPX cases.Data from a cohort of suspect MPX cases (identified by surveillance over the course of a 42 month period during 2009-2014 from DRC were used; real-time PCR diagnostic test results were used to establish MPX and VZV diagnoses. A total of 333 laboratory-confirmed MPX cases, 383 laboratory-confirmed VZV cases, and 36 cases that were determined to not be either MPX or VZV were included in the analyses. Significant (p<0.05 differences between laboratory-confirmed MPX and VZV cases were noted for several signs/symptoms including key rash characteristics. Both surveillance case definitions had high sensitivity and low specificities for individuals that had suspected MPX virus infections. Using 12 signs/symptoms with high sensitivity and/or specificity values, a receiver operator characteristic analysis showed that models for MPX cases that had the presence of 'fever before rash' plus at least 7 or 8 of the 12 signs/symptoms demonstrated a more balanced performance between sensitivity and specificity.Laboratory-confirmed MPX and VZV cases presented with many of the same signs and symptoms, and the analysis here emphasized the utility of including 12 specific signs/symptoms when investigating MPX cases. In order to document and detect endemic human MPX cases, a surveillance case definition with more specificity is needed for accurate case detection. In the absence of a more specific case definition, continued emphasis on confirmatory laboratory-based diagnostics is warranted.

  13. Potensi Kapsul Bee Pollen Plus sebagai Food Supplement Inovatif Peningkat Stamina dalam Rangka Pencegahan Penggunaan Doping pada Atlet Makassar : Uji Coba pada Mahasiswa UKM Sepak Bola

    OpenAIRE

    Utomo, Emilia; Saidah, Lia Nurmilatun; Utami, Iin Fadhilah; Sartini, Sartini

    2017-01-01

    Doping used for stamina enhancement and athletes' performance is actually a medicine that has negative effects on health and potentially causes an addiction. Therefore, it is necessary supplements that can increase the stamina and endurance of an athlete and at the same time could minimize the possibility of doping USAge. Bee pollen is one of the products of bees which is rich nutrients. The nutrients content of Bee pollen such as carbohydrates, proteins, lipids, minerals, vitamins, and polyp...

  14. UJI COBA TEKNOLOGI BIOFILM KONSORSIUM BAKTERI PADA REAKTOR SEMIANAEROB-AEROB UNTUK PENGOLAHAN AIR LIMBAH DI INDUSTRI PENCELUPAN TEKSTIL SKALA RUMAH TANGGA

    Directory of Open Access Journals (Sweden)

    Dewa Ketut Sastrawidana

    2013-04-01

    Full Text Available Penelitian ini bertujuan untuk menganalisis efektifitas teknologi biofilm konsorsium bakteri pada  reaktor semianaerob-aerob ntuk mengolah air limbah pencelupan tekstil. Bakteri pada reaktor semianaerob terdiri dari  Aeromonas sp. Pseudomonas sp, dan Flavobacterium sp. sedangkan pada reaktor aerob terdiri dari Vibrio sp. Plesiomonas sp. dan Enterobacter sp. Perombakan proses pertumbuhan terlekat diawali dengan menumbuhkan konsorsium bakteri pada masing-masing reaktor selama 10  hari menggunakan pada batu vulkanik merah sebagai media pelekatan bakteri. Setelah terbentuk biofilm,selanjutnya digunakan untuk merombak limbah denagn waktu tinggal limbah 2 hari. Hasil penelitian menunjukkan teknologi biofilm cukup efektif diaplikasikan pada skala lapang menghasilkan efisiensi perombakan TSS, BOD dan COD secara berturut-turut sebesar 84,7%; 80,56% dan 90,40%. Uji toksisitas air limbah tekstil menggunakan ikan nila dengan waktu paparan 3 hari menunjukkan bahwa air limbah tekstil sebelum diolah berkatagori toksik ringan dengan nilai EC50 adalah 88,80% sedangkan setelah diolah dalam reaktor biofilm konsorsium bakteri sistem anaerob-aerob selama 2 hari menjadi katagori tidak toksik dengan nilai EC50 sebesar 101,64%. Dengan demikian, pengolahan limbah tektil dengan sistem kombinasi anaerob-aerob menghasilkan kualitas limbah dengan kriteria sudah memenuhi baku mutu untuk dibuang ke lingkungan.

  15. Analytical performance evaluation of the Elecsys® Cyclosporine and Elecsys® Tacrolimus assays on the cobas e411 analyzer

    Directory of Open Access Journals (Sweden)

    Maki Sasano

    2017-08-01

    Full Text Available Background: Cyclosporine (CsA and tacrolimus (TAC are immunosuppressant drugs that are often used to treat autoimmune diseases and as transplantation therapy; therefore, their concentrations need to be monitored carefully. We herein evaluated the analytical performance of the Elecsys® Cyclosporine and Elecsys® Tacrolimus assay kits, which have been newly developed to measure CsA and TAC concentrations in the whole blood. Methods: We used residual whole blood samples from autoimmune disease and transplantation patients who were being treated with CsA or TAC. CsA concentrations were measured using an affinity chrome-mediated immunoassay (ACMIA and an electrochemiluminescence immunoassay (ECLIA. TAC concentrations were measured using a chemiluminescence immunoassay (CLIA and ECLIA. We investigated assay precision, linearity, lower limit of quantitation (LOQ, stability of calibration, influence of interference substances and the hematocrit, correlation of ACMIA with ECLIA, and correlation of CLIA with ECLIA. Results: Within-assay coefficients of variation were 1.8−3.6% (CsA: 94−1238 ng/mL and 2.9−3.9% (TAC: 2.1−17.8 ng/mL, whereas day-to-day coefficients of variation ranged between 3.0−4.1% (CsA and 2.8−3.9% (TAC. The limits of quantitation were defined as the concentration at which the CV was approximately 10%. Each lower LOQ obtained was 16 ng/mL (CsA, and 0.95 ng/mL (TAC. CsA and TAC calibrations were stable for at least 21 days. Neither the presence of conjugated bilirubin, unconjugated bilirubin, chyle, and rheumatoid factor nor the hematocrit affected these assays. A method comparison using a standardized major axis regression analysis of ACMIA and ECLIA was r=0.995, y=0.924x −1.175, n=200 (CsA, while that of CLIA and ECLIA was r=0.994, y=1.080x −0.197, n=200 (TAC. Conclusions: The analytical performances of the Elecsys® Cyclosporine and Elecsys®Tacrolimus assays were acceptable. Furthermore, CyA and TAC concentrations may be simultaneously measured using a single pretreatment which is of benefit if patients have to undertake conversion between these two drugs. Additionally, it benefits the workflow in the clinical laboratory. Thus, the Elecsys® Cyclosporine and Elecsys® Tacrolimus assays may be suitable for routine therapeutic drug monitoring.

  16. Does the Cognitive Architecture of Simplex and Multiplex ASD Families Differ?

    Science.gov (United States)

    Oerlemans, Anoek M.; Hartman, Catharina A.; Franke, Barbara; Buitelaar, Jan K.; Rommelse, Nanda N. J.

    2016-01-01

    Children with an autism spectrum disorder (ASD) and their unaffected siblings from 54 simplex (SPX, one individual in the family affected) and 59 multiplex (MPX, two or more individuals affected) families, and 124 controls were assessed on intelligence, social cognition and executive functions. SPX and MPX ASD probands displayed similar cognitive…

  17. Cognitive Impairments Are Different in Single-Incidence and Multi-Incidence ADHD Families

    Science.gov (United States)

    Oerlemans, Anoek M.; Hartman, Catharina A.; Bruijn, Yvette G. E.; Franke, Barbara; Buitelaar, Jan K.; Rommelse, Nanda N. J.

    2015-01-01

    Background: We may improve our understanding of the role of common versus unique risk factors in attention-deficit/hyperactivity disorder (ADHD) by examining ADHD-related cognitive deficits in single- (SPX), and multi-incidence (MPX) families. Given that individuals from multiplex (MPX) families are likely to share genetic vulnerability for the…

  18. PENGUKUR TEKANAN DARAH OTOMATIS BERBASIS ANDROID

    Directory of Open Access Journals (Sweden)

    Ellisya Elviyana

    2016-02-01

    Full Text Available ABSTRAK. Telah dibuat alat pengukur tekanan darah otomatis berbasis Android yang dapat menampilkan nilai tekanan sistolik dan diastolik pada LCD maupun smartphone Android. Alat yang dibuat terdiri dari motor DC, solenoid valve, relay, sensor tekanan MPX2100GP, pulse sensor, penguat instrumentasi, modul Arduino Uno, 1Sheeld dan smartphone Android. Pulse sensor berfungsi sebagai indikator denyut nadi, dan MPX2100GP sebagai pengukur tekanan darah.    Tekanan sistolik yang terukur oleh MPX2100GP tampil pada saat sinyal pulsa tertinggi pertama nadi terbaca oleh indikator pulse sensor. Tekanan diastolik kemudian tampil dua detik setelah tekanan sistolik dan selanjutnya nilai tekanan sistolik dan diastolik dikirim melalui modul Bluetooth 1Sheeld untuk ditampilkan    pada smartphone Android. Berdasarkan hasil pengujian, akurasi pembacaan sistolik dan diastolik rata-rata 99,98 % dan 99,97%.   Kata Kunci : tekanan darah, sensor tekanan mpx2100gp, pulse sensor, modul arduino uno, modul 1sheeld

  19. Increased Sensory Processing Atypicalities in Parents of Multiplex ASD Families Versus Typically Developing and Simplex ASD Families

    OpenAIRE

    Donaldson, Chelsea K.; Stauder, Johannes E. A.; Donkers, Franc C. L.

    2016-01-01

    Recent studies have suggested that sensory processing atypicalities may share genetic influences with autism spectrum disorder (ASD). To further investigate this, the adolescent/adult sensory profile (AASP) questionnaire was distributed to 85 parents of typically developing children (P-TD), 121 parents from simplex ASD families (SPX), and 54 parents from multiplex ASD families (MPX). After controlling for gender and presence of mental disorders, results showed that MPX parents significantly d...

  20. Evaluation of monkeypox virus infection of prairie dogs (Cynomys ludovicianus) using in vivo bioluminescent imaging

    Science.gov (United States)

    Falendysz, Elizabeth A.; Londoño-Navas, Angela M.; Meteyer, Carol U.; Pussini, Nicola; Lopera, Juan G.; Osorio, Jorge E.; Rocke, Tonie E.

    2014-01-01

    Monkeypox (MPX) is a re-emerging zoonotic disease that is endemic in Central and West Africa, where it can cause a smallpox-like disease in humans. Despite many epidemiologic and field investigations of MPX, no definitive reservoir species has been identified. Using recombinant viruses expressing the firefly luciferase (luc) gene, we previously demonstrated the suitability of in vivo bioluminescent imaging (BLI) to study the pathogenesis of MPX in animal models. Here, we evaluated BLI as a novel approach for tracking MPX virus infection in black-tailed prairie dogs (Cynomys ludovicianus). Prairie dogs were affected during a multistate outbreak of MPX in the US in 2003 and have since been used as an animal model of this disease. Our BLI results were compared with PCR and virus isolation from tissues collected postmortem. Virus was easily detected and quantified in skin and superficial tissues by BLI before and during clinical phases, as well as in subclinical secondary cases, but was not reliably detected in deep tissues such as the lung. Although there are limitations to viral detection in larger wild rodent species, BLI can enhance the use of prairie dogs as an animal model of MPX and can be used for the study of infection, disease progression, and transmission in potential wild rodent reservoirs.

  1. Phenol remediation by peroxidase from an invasive mesquite: Turning an environmental wound into wisdom.

    Science.gov (United States)

    Singh, Savita; Mishra, Ruchi; Sharma, Radhey Shyam; Mishra, Vandana

    2017-07-15

    The present study examines mesquite (Prosopis juliflora), an invasive species, to yield peroxidase that may reduce hazards of phenolics to living organisms. As low as 0.3U of low-purity mesquite peroxidase (MPx) efficiently remove phenol and chlorophenols (90-92%) compared with Horseradish peroxidase (HRP) (40-60%). MPx shows a very high removal efficiency (40-50%) at a wide range of pH (2-9) and temperature (20-80°C), as opposed to HRP (15-20%). At a high-level of the substrate (2.4mM) and without the addition of PEG, MPx maintains a significant phenolic removal (60-≥92%) and residual activity (∼25%). It proves the superiority of MPx over HRP, which showed insignificant removal (10-12%) under similar conditions, and no residual activity even with PEG addition. The root elongation and plant growth bioassays confirm phenolic detoxification by MPx. Readily availability of mesquite across the countries and easy preparation of MPx from leaves make this tree as a sustainable source for a low-technological solution for phenol remediation. This study is the first step towards converting a biological wound of invasive species into wisdom and strength for protecting the environment from phenol pollution. Copyright © 2017 Elsevier B.V. All rights reserved.

  2. Interface and integration of a silicon graphics UNIX computer with the Encore based SCE SONGS 2/3 simulator

    International Nuclear Information System (INIS)

    Olmos, J.; Lio, P.; Chan, K.S.

    1991-01-01

    The SONGS Unit 2/3 simulator was originally implemented in 1983 on a Master/Slave 32/7780 Encore MPX platform by the Singer-Link Company. In 1986, a 32/9780 MPX Encore computer was incorporated into the simulator computer system to provide the additional CPU processing needed to install the PACE plant monitoring system and to enable the upgrade of the NSSS Simulation to the advanced RETACT/STK models. Since the spring of 1990, the SCE SONGS Nuclear Training Division simulator technical staff, in cooperation with Micro Simulation Inc., has undertaken a project to integrate a Silicon Graphics UNIX based computer with the Encore MPX SONGS 2/3 simulation computer system. In this paper the authors review the objectives, advantages to be gained, software and hardware approaches utilized, and the results so far achieved by the authors' project

  3. Pathogen-Host Associations and Predicted Range Shifts of Human Monkeypox in Response to Climate Change in Central Africa

    Science.gov (United States)

    Thomassen, Henri A.; Fuller, Trevon; Asefi-Najafabady, Salvi; Shiplacoff, Julia A. G.; Mulembakani, Prime M.; Blumberg, Seth; Johnston, Sara C.; Kisalu, Neville K.; Kinkela, Timothée L.; Fair, Joseph N.; Wolfe, Nathan D.; Shongo, Robert L.; LeBreton, Matthew; Meyer, Hermann; Wright, Linda L.; Muyembe, Jean-Jacques; Buermann, Wolfgang; Okitolonda, Emile; Hensley, Lisa E.; Lloyd-Smith, James O.; Smith, Thomas B.; Rimoin, Anne W.

    2013-01-01

    Climate change is predicted to result in changes in the geographic ranges and local prevalence of infectious diseases, either through direct effects on the pathogen, or indirectly through range shifts in vector and reservoir species. To better understand the occurrence of monkeypox virus (MPXV), an emerging Orthopoxvirus in humans, under contemporary and future climate conditions, we used ecological niche modeling techniques in conjunction with climate and remote-sensing variables. We first created spatially explicit probability distributions of its candidate reservoir species in Africa's Congo Basin. Reservoir species distributions were subsequently used to model current and projected future distributions of human monkeypox (MPX). Results indicate that forest clearing and climate are significant driving factors of the transmission of MPX from wildlife to humans under current climate conditions. Models under contemporary climate conditions performed well, as indicated by high values for the area under the receiver operator curve (AUC), and tests on spatially randomly and non-randomly omitted test data. Future projections were made on IPCC 4th Assessment climate change scenarios for 2050 and 2080, ranging from more conservative to more aggressive, and representing the potential variation within which range shifts can be expected to occur. Future projections showed range shifts into regions where MPX has not been recorded previously. Increased suitability for MPX was predicted in eastern Democratic Republic of Congo. Models developed here are useful for identifying areas where environmental conditions may become more suitable for human MPX; targeting candidate reservoir species for future screening efforts; and prioritizing regions for future MPX surveillance efforts. PMID:23935820

  4. Multicenter evaluation of the new Abbott RealTime assays for quantitative detection of human immunodeficiency virus type 1 and hepatitis C virus RNA

    NARCIS (Netherlands)

    Schutten, Martin; Peters, D; Back, N K T; Beld, M; Beuselinck, K; Foulongne, V; Geretti, A-M; Pandiani, L; Tiemann, C; Niesters, H G M

    The analytical performances of the new Abbott RealTime hepatitis C virus (HCV) and human immunodeficiency virus type 1 viral load assays were compared at nine laboratories with different competitor assays. These included the Abbott LcX, Bayer Versant bDNA, Roche COBAS Amplicor, and Roche COBAS

  5. Multicenter evaluation of the new Abbott RealTime assays for quantitative detection of human immunodeficiency virus type 1 and hepatitis C virus RNA

    NARCIS (Netherlands)

    Schutten, M.; Peters, D.; Back, N. K. T.; Beld, M.; Beuselinck, K.; Foulongne, V.; Geretti, A.-M.; Pandiani, L.; Tiemann, C.; Niesters, H. G. M.

    2007-01-01

    The analytical performances of the new Abbott RealTime hepatitis C virus (HCV) and human immunodeficiency virus type 1 viral load assays were compared at nine laboratories with different competitor assays. These included the Abbott LcX, Bayer Versant bDNA, Roche COBAS Amplicor, and Roche COBAS

  6. Zika virus RNA polymerase chain reaction on the utility channel of a commercial nucleic acid testing system.

    Science.gov (United States)

    Boujnan, Mohamed; Duits, Ashley J; Koppelman, Marco H G M

    2018-03-01

    Several countries have implemented safety strategies to reduce the risk of Zika virus (ZIKV) transmission through blood transfusion. These strategies have included nucleic acid amplification testing (NAT) of blood donations. In this study, a new real-time polymerase chain reaction (PCR) assay including internal control for the detection of ZIKV on the cobas omni Utility Channel (UC) on the cobas 6800 system is presented. PCR conditions and primer/probe concentrations were optimized on the LightCycler 480 instrument. Optimized conditions were transferred to the cobas omni UC on the cobas 6800 system. Subsequently, the limit of detection (LOD) in plasma and urine, genotype inclusivity, specificity, cross-reactivity, and clinical sensitivity were determined. The 95% LOD of the ZIKV PCR assay on the cobas 6800 system was 23.0 IU/mL (95% confidence interval [CI], 16.5-37.5) in plasma and 24.5 IU/mL (95% CI, 13.4-92.9) in urine. The assay detected African and Asian lineages of ZIKV. The specificity was 100%. The clinical concordance between the newly developed ZIKV PCR assay and the investigational Roche cobas Zika NAT test was 83% (24/29). We developed a sensitive ZIKV PCR assay on the cobas omni UC on the cobas 6800 system. The assay can be used for large-scale screening of blood donations for ZIKV or for testing of blood donors returning from areas with ZIKV to avoid temporal deferral. This study also demonstrates that the cobas omni UC on the cobas 6800 system can be used for in-house-developed PCR assays. © 2018 AABB.

  7. Does the cognitive architecture of simplex and multiplex ASD families differ?

    NARCIS (Netherlands)

    Oerlemans, A.M.; Hartman, C.A.; Franke, B.; Buitelaar, J.K.; Rommelse, N.N.J.

    2016-01-01

    Children with an autism spectrum disorder (ASD) and their unaffected siblings from 54 simplex (SPX, one individual in the family affected) and 59 multiplex (MPX, two or more individuals affected) families, and 124 controls were assessed on intelligence, social cognition and executive functions. SPX

  8. Does the cognitive architecture of simplex and multiplex ASD families differ?

    NARCIS (Netherlands)

    Oerlemans, Anoek M.; Hartman, Catharina A.; Franke, Barbara; Buitelaar, Jan K.; Rommelse, Nanda N. J.

    Children with an autism spectrum disorder (ASD) and their unaffected siblings from 54 simplex (SPX, one individual in the family affected) and 59 multiplex (MPX, two or more individuals affected) families, and 124 controls were assessed on intelligence, social cognition and executive functions. SPX

  9. Simplex and Multiplex Stratification in ASD and ADHD Families: A Promising Approach for Identifying Overlapping and Unique Underpinnings of ASD and ADHD?

    Science.gov (United States)

    Oerlemans, Anoek M.; Hartman, Catharina A.; De Bruijn, Yvette G. E.; Van Steijn, Daphne J.; Franke, Barbara; Buitelaar, Jan K.; Rommelse, Nanda N. J.

    2015-01-01

    Autism spectrum disorders (ASD) and attention-deficit/hyperactivity disorder (ADHD) are highly heterogeneous neuropsychiatric disorders, that frequently co-occur. This study examined whether stratification into single-incidence (SPX) and multi-incidence (MPX) is helpful in (a) parsing heterogeneity and (b) detecting overlapping and unique…

  10. Successive approximation analog to digital conversion system with good differential linearity

    Energy Technology Data Exchange (ETDEWEB)

    Carter, D E; Randers-Pehrson, G [Ohio Univ., Athens (USA). Dept. of Physics

    1982-08-15

    A high speed modified successive approximation 4 input ADC system has been designed and constructed. Throughput rates of 250 kHz at 12 bit conversion gain with good differential linearity is achieved at low cost, using the MPX4 ADC system.

  11. Using a fully convolutional neural network for detecting locations of weeds in images from cereal fields

    DEFF Research Database (Denmark)

    Dyrmann, Mads; Skovsen, Søren; Sørensen, René A.

    2018-01-01

    been evaluated on an Nvidia Titan X, on which it is able to process a 5MPx image in 0.02s, making the method suitable for real-time field operation. For mechanical weed control, this network is sufficient. However, for chemical weed control, we also need to know the weed species in order to choose...

  12. Simplex and Multiplex Stratification in ASD and ADHD Families: A Promising Approach for Identifying Overlapping and Unique Underpinnings of ASD and ADHD?

    NARCIS (Netherlands)

    Oerlemans, A.M.; Hartman, C.A.; Bruijn, Y.G.E. de; Steijn, D.J. Van; Franke, B.; Buitelaar, J.K.; Rommelse, N.N.J.

    2015-01-01

    Autism spectrum disorders (ASD) and attention-deficit/hyperactivity disorder (ADHD) are highly heterogeneous neuropsychiatric disorders, that frequently co-occur. This study examined whether stratification into single-incidence (SPX) and multi-incidence (MPX) is helpful in (a) parsing heterogeneity

  13. Simplex and Multiplex Stratification in ASD and ADHD Families : A Promising Approach for Identifying Overlapping and Unique Underpinnings of ASD and ADHD?

    NARCIS (Netherlands)

    Oerlemans, Anoek M.; Hartman, Catharina A.; De Bruijn, Yvette G. E.; Van Steijn, Daphne J.; Franke, Barbara; Buitelaar, Jan K.; Rommelse, Nanda N. J.

    Autism spectrum disorders (ASD) and attention-deficit/hyperactivity disorder (ADHD) are highly heterogeneous neuropsychiatric disorders, that frequently co-occur. This study examined whether stratification into single-incidence (SPX) and multi-incidence (MPX) is helpful in (a) parsing heterogeneity

  14. Comparison of the RealTime HIV-1, COBAS TaqMan 48 v1.0, Easy Q v1.2, and Versant v3.0 assays for Determination of HIV-1 Viral Loads in a Cohort of Canadian Patients with Diverse HIV Subtype Infections▿

    OpenAIRE

    Church, Deirdre; Gregson, Daniel; Lloyd, Tracie; Klein, Marina; Beckthold, Brenda; Laupland, Kevin; Gill, M. John

    2010-01-01

    HIV clinics in Canada provide care to an increasing number of patients born outside of Canada with HIV-1 non-B subtype infections. Because the Easy Q HIV-1 v1.2 assay (EQ; bioMérieux) failed to detect some non-B subtype infections, a multiassay HIV-1 viral load (VL) study was conducted with patients with diverse HIV subtype infections. Patients were enrolled from the Southern Alberta HIV Clinic (SAC), Calgary, Alberta, Canada (n = 349) and the McGill HIV Clinic (MHC), Montreal, Quebec, Canada...

  15. Performance of the new Bayer VERSANT HCV RNA 3.0 assay for quantitation of hepatitis C virus RNA in plasma and serum: Conversion to international units and comparison with the Roche COBAS amplicor HCV monitor, version 2.0, assay

    NARCIS (Netherlands)

    Beld, Marcel; Sentjens, Roel; Rebers, Sjoerd; Weegink, Christine; Weel, Jan; Sol, Cees; Boom, René

    2002-01-01

    We have evaluated the VERSANT HCV RNA 3.0. Assay (HCV 3.0 bDNA assay) (Bayer Diagnostics, Berkeley, Calif.), which is an improved signal amplification procedure for the HCV 2.0 bDNA assay for the quantitation of hepatitis C virus (HCV) RNA in serum or plasma of HCV-infected individuals. The HCV 3.0

  16. PENGEMBANGAN MODUL SISTEM KEAMANAN JARINGAN BERBASIS SIMULASI CISCO

    Directory of Open Access Journals (Sweden)

    Zulkipli Zulkipli

    2016-03-01

    Tujuan penelitian adalah untuk menghasilkan dan menguji kelayakan modul sistem keamanan jaringan berbasis simulasi Cisco Paket Tracer untuk peserta didik SMK. Model pengembangan yang digunakan adalah model Dick, Carey & Carey dengan sembilan langkah. Pengembangan produk ini divalidasi oleh ahli materi dengan tingkat kevalidan 96%, ahli media dengan tingkat kevalidan 92.8%, ahli desain pembelajaran dengan tingkat kevalidan 83%, uji coba perorangan dengan tingkat kevalidan 92.3%, uji coba kelompok kecil dengan tingkat kevalidan 92% dan uji coba lapangan dengan tingkat kevalidan 89% dengan kualifikasi sangat layak tidak perlu revisi.

  17. PENGEMBANGAN MODEL KOLABORASI JIGSAW ROLE PLAYING SEBAGAI UPAYA PENINGKATAN KEMAMPUAN BEKERJASAMA SISWA KELAS V SD PADA PELAJARAN IPS

    Directory of Open Access Journals (Sweden)

    Ika Ari Pratiwi

    2015-11-01

    Full Text Available Penelitian bertujuan untuk mengembangkan model kolaborasi jigsaw, role playing untuk meningkatkan kemampuan bekerjasama siswa yang valid, efektif dan praktis. Metode penelitian adalah penelitian dan pengembangan (R&D. Tahap uji coba pengembangan terdiri atas uji coba ahli, uji coba skala terbatas dan uji coba skala luas. Keefektifan model kolaborasi jigsaw role playing  diperoleh rata-rata 51,83 dalam kategori baik diterapkan dalam pelajaran IPS, peningkatan kemampuan bekerjasama siswa hasil N-gain = 0,56 dengan kategori sedang, peningkatan hasil belajar IPS N-gain = 0,50 dengan kategori sedang dan hasil ketuntasan klasikal pembelajaran IPS 97,14%.  Hasil respon guru dan siswa terhadap model yang digunakan adalah berkriteria baik. Model final penelitian ini menghasilkan model kolaborasi jigsaw role playing yang dikemas dalam suatu buku pedoman.

  18. IMPLEMENTASI ALGORITMA MONTE CARLO PADA SISTEM INFORMASI PENERIMAAN PESERTA DIDIK BARU (PPDB SECARA ONLINE

    Directory of Open Access Journals (Sweden)

    Muhammad Rizki Irwanto

    2017-08-01

    Full Text Available Tujuan penelitian ini untuk mengimplementasikan algoritma pada sistem in­formasi Penerimaan Peserta Didik Baru (PPDB secara online.Metode penelitian yang digunakan dalam pengembangan sistem informasi ini adalah metode pe­ngem­bang­an Waterfall. Tahap-tahap dalam metode pengembangan Waterfall, ada­lah: (1 de­finisi kebutuhan sistem, (2 desain sistem dan perangkat lunak, (3 im­ple­men­tasi dan pengujian unit, (4 integrasi dan sistem, dan (5 operasi dan pemeliharaan. Hasil uji coba sis­tem informasi oleh ahli rekayasa web dan admin sebesar 100,00%. Data hasil uji coba sistem informasi oleh guru sebesar 84,10%. Sedangkan data hasil uji coba sis­tem informasi oleh siswa sebesar 87,20%. Dari  data hasil uji coba di atas, dapat di­sim­pulkan bahwa sistem informasi ini sudah valid dan siap digunakan di sekolah.

  19. Human Papillomavirus Assays and Cytology in Primary Cervical Screening of Women Aged 30 Years and Above

    DEFF Research Database (Denmark)

    Rebolj, Matejka; Bonde, Jesper; Preisler, Sarah

    2016-01-01

    In women aged ≥30 years, Human Papillomavirus testing will replace cytology for primary cervical screening. We compared Hybrid Capture 2 (HC2), cobas, CLART, and APTIMA HPV assays with cytology on 2869 SurePath samples from women undergoing routine screening at 30-65 years in Copenhagen, Denmark....... Women with cytological abnormalities were managed according to routine recommendations, with 92% completeness. Those with cytology-normal/HPV-positive samples (on any of the four assays) were invited for repeated cytology and HPV testing in 1.5 year, and 58% had additional testing. HPV testing detected...... more ≥CIN3 than cytology (HC2: 35, cobas, CLART: 37, APTIMA: 34, cytology: 31), although statistically the differences were not significant. Cobas and CLART detected significantly more ≥CIN2 than cytology (cobas, CLART: 49, cytology: 39). The proportion of women with false-positive test results...

  20. Performance of the Xpert HPV assay in women attending for cervical screening

    Directory of Open Access Journals (Sweden)

    Jack Cuzick

    2015-12-01

    Full Text Available Objectives: This study evaluated the Xpert HPV Assay in women attending screening in general practice by comparing Xpert with two established HPV tests, cytology and histology. Methods: A prospective study in women aged 20–60 years attending screening in Bristol, Edinburgh and London using residual Preservcyt cytology samples. Sample order was randomised between Roche cobas4800 and Cepheid Xpert assays with Qiagen hc2 third. Results: 3408 cases were included in the primary analysis. Positivity for Xpert was 19.6%, cobas 19.2% and hc2 19.9% with high concordance (kappa=86.8% vs cobas, 81.55 vs hc2. Xpert, cobas and hc2 showed similar sensitivity (98.7%, 97.5%, 98.7% for CIN2+. All pairwise comparisons had high concordance (Kappa ≥0.78 with any abnormal cytology. Xpert and hc2 were positive for all cases of ≥moderate dyskaryosis (N=63, cobas was negative in two. Histology was available for 172 participants. 79 reported CIN2+, 47 CIN3+. All CIN3+ was positive on Xpert and hc2 and one case negative for cobas. One case of CIN2 was negative for all assays. Conclusions: The performance of Xpert HPV Assay in a general screening population is comparable to established HPV tests. It offers simplicity of testing, flexibility with non-batching of individual samples and rapid turnaround time. Keywords: Human papillomavirus, Xpert, Cervical screening, HPV testing

  1. A development of an accelerator board dedicated for multi-precision arithmetic operations and its application to Feynman loop integrals

    International Nuclear Information System (INIS)

    Motoki, S; Ishikawa, T; Yuasa, F; Daisaka, H; Nakasato, N; Fukushige, T; Kawai, A; Makino, J

    2015-01-01

    Higher order corrections in perturbative quantum field theory are required for precise theoretical analysis to investigate new physics beyond the Standard Model. This indicates that we need to evaluate Feynman loop diagrams with multi-loop integrals which may require multi-precision calculation. We developed a dedicated accelerator system for multiprecision calculations (GRAPE9-MPX). We present performance results of our system for the case of Feynman two-loop box and three-loop selfenergy diagrams with multi-precision. (paper)

  2. Identification of genomic differences between Campylobacter jejuni subsp. jejuni and C. jejuni subsp. doylei at the nap locus leads to the development of a C. jejuni subspeciation multiplex PCR method

    Directory of Open Access Journals (Sweden)

    Heath Sekou

    2007-02-01

    Full Text Available Abstract Background The human bacterial pathogen Campylobacter jejuni contains two subspecies: C. jejuni subsp. jejuni (Cjj and C. jejuni subsp. doylei (Cjd. Although Cjd strains are isolated infrequently in many parts of the world, they are obtained primarily from human clinical samples and result in an unusual clinical symptomatology in that, in addition to gastroenteritis, they are associated often with bacteremia. In this study, we describe a novel multiplex PCR method, based on the nitrate reductase (nap locus, that can be used to unambiguously subspeciate C. jejuni isolates. Results Internal and flanking napA and napB primer sets were designed, based on existing C. jejuni and Campylobacter coli genome sequences to create two multiplex PCR primer sets, nap mpx1 and nap mpx2. Genomic DNA from 161 C. jejuni subsp. jejuni (Cjj and 27 C. jejuni subsp. doylei (Cjd strains were amplified with these multiplex primer sets. The Cjd strains could be distinguished clearly from the Cjj strains using either nap mpx1 or mpx2. In addition, combination of either nap multiplex method with an existing lpxA speciation multiplex method resulted in the unambiguous and simultaneous speciation and subspeciation of the thermophilic Campylobacters. The Cjd nap amplicons were also sequenced: all Cjd strains tested contained identical 2761 bp deletions in napA and several Cjd strains contained deletions in napB. Conclusion The nap multiplex PCR primer sets are robust and give a 100% discrimination of C. jejuni subspecies. The ability to rapidly subspeciate C. jejuni as well as speciate thermophilic Campylobacter species, most of which are pathogenic in humans, in a single amplification will be of value to clinical laboratories in strain identification and the determination of the environmental source of campylobacterioses caused by Cjd. Finally, the sequences of the Cjd napA and napB loci suggest that Cjd strains arose from a common ancestor, providing clues as to

  3. Improving the Care and Treatment of Monkeypox Patients in Low-Resource Settings: Applying Evidence from Contemporary Biomedical and Smallpox Biodefense Research

    Directory of Open Access Journals (Sweden)

    Mary G. Reynolds

    2017-12-01

    Full Text Available Monkeypox is a smallpox-like illness that can be accompanied by a range of significant medical complications. To date there are no standard or optimized guidelines for the clinical management of monkeypox (MPX patients, particularly in low-resource settings. Consequently, patients can experience protracted illness and poor outcomes. Improving care necessitates developing a better understanding of the range of clinical manifestations—including complications and sequelae—as well as of features of illness that may be predictive of illness severity and poor outcomes. Experimental and natural infection of non-human primates with monkeypox virus can inform the approach to improving patient care, and may suggest options for pharmaceutical intervention. These studies have traditionally been performed to address the threat of smallpox bioterrorism and were designed with the intent of using MPX as a disease surrogate for smallpox. In many cases this necessitated employing high-dose, inhalational or intravenous challenge to recapitulate the severe manifestations of illness seen with smallpox. Overall, these data—and data from biomedical research involving burns, superficial wounds, herpes, eczema vaccinatum, and so forth—suggest that MPX patients could benefit from clinical support to mitigate the consequences of compromised skin and mucosa. This should include prevention and treatment of secondary bacterial infections (and other complications, ensuring adequate hydration and nutrition, and protecting vulnerable anatomical locations such as the eyes and genitals. A standard of care that considers these factors should be developed and assessed in different settings, using clinical metrics specific for MPX alongside consideration of antiviral therapies.

  4. MASTER-ICATE constraints on the outburst time of OGLE-2012-NOVA-002

    Science.gov (United States)

    Levato, H.; Saffe, C.; Mallamaci, C.; Lopez, C.; Denisenko, F. Podest D.; Gorbovskoy, E.; Lipunov, V.; Balanutsa, P.; Tiurina, N.; Kornilov, V.; Belinski, A.; Shatskiy, N.; Chazov, V.; Kuznetsov, A.; Zimnukhov, D.; Krushinsky, V.; Zalozhnih, I.; Popov, A.; Bourdanov, A.; Punanova, A.; Ivanov, K.; Yazev, S.; Budnev, N.; Konstantinov, E.; Chuvalaev, O.; Poleshchuk, V.; Gress, O.; Parkhomenko, A.; Tlatov, A.; Dormidontov, D.; Senik, V.; Yurkov, V.; Sergienko, Y.; Varda, D.; Sinyakov, E.; Shumkov, V.; Shurpakov, S.; Podvorotny, P.

    2012-10-01

    MASTER-ICATE very wide field camera (72-mm f/1.2 lens + 11 Mpx CCD) located at Observatorio Astronomico Felix Aguilar (OAFA) near San Juan, Argentina, has observed the position of possible Nova OGLE-2012-NOVA-002 reported by L. Wyrzykowski et al. (ATel #4483) several times before 2012 May 20 and then again after 2012 July 03. MASTER-WFC is continuously imaging the areas of sky (24x16 sq. deg. field of view) with 5-sec unfiltered exposures.

  5. Comparison of West African and Congo Basin monkeypox viruses in BALB/c and C57BL/6 mice.

    Directory of Open Access Journals (Sweden)

    Christina L Hutson

    2010-01-01

    Full Text Available Although monkeypox virus (MPXV studies in wild rodents and non-human primates have generated important knowledge regarding MPXV pathogenesis and inferences about disease transmission, it might be easier to dissect the importance of virulence factors and correlates of protection to MPXV in an inbred mouse model. Herein, we compared the two clades of MPXV via two routes of infection in the BALB/c and C57BL/6 inbred mice strains. Our studies show that similar to previous animal studies, the Congo Basin strain of MPXV was more virulent than West African MPXV in both mouse strains as evidenced by clinical signs. Although animals did not develop lesions as seen in human MPX infections, localized signs were apparent with the foot pad route of inoculation, primarily in the form of edema at the site of inoculation; while the Congo Basin intranasal route of infection led to generalized symptoms, primarily weight loss. We have determined that future studies with MPXV and laboratory mice would be very beneficial in understanding the pathogenesis of MPXV, in particular if used in in vivo imaging studies. Although this mouse model may not suffice as a model of human MPX disease, with an appropriate inbred mouse model, we can unravel many unknown aspects of MPX pathogenesis, including virulence factors, disease progression in rodent hosts, and viral shedding from infected animals. In addition, such a model can be utilized to test antivirals and the next generation of orthopoxvirus vaccines for their ability to alter the course of disease.

  6. Usefulness of in-house PCR methods for hepatitis B virus DNA detection.

    Science.gov (United States)

    Portilho, Moyra Machado; Baptista, Marcia Leite; da Silva, Messias; de Sousa, Paulo Sérgio Fonseca; Lewis-Ximenez, Lia Laura; Lampe, Elisabeth; Villar, Livia Melo

    2015-10-01

    The aim of the present study was to evaluate the performance of three in-house PCR techniques for HBV DNA detection and compare it with commercial quantitative methods to evaluate the usefulness of in-house methods for HBV diagnosis. Three panels of HBsAg reactive sera samples were evaluated: (i) 50 samples were examined using three methods for in-house qualitative PCR and the Cobas Amplicor HBV Monitor Assay; (ii) 87 samples were assayed using in-house semi-nested PCR and the Cobas TaqMan HBV test; (iii) 11 serial samples obtained from 2 HBV-infected individuals were assayed using the Cobas Amplicor HBV test and semi-nested PCR. In panel I, HBV DNA was detected in 44 samples using the Cobas Amplicor HBV test, 42 samples using semi-nested PCR (90% concordance with Cobas Amplicor), 22 samples using PCR for the core gene (63.6% concordance) and 29 samples using single-round PCR for the pre-S/S gene (75% concordance). In panel II, HBV DNA was quantified in 78 of the 87 HBsAg reactive samples using Cobas TaqMan but 52 samples using semi-nested PCR (67.8% concordance). HBV DNA was detected in serial samples until the 17th and 26th week after first donation using in-house semi-nested PCR and the Cobas Amplicor HBV test, respectively. In-house semi-nested PCR presented adequate concordance with commercial methods as an alternative method for HBV molecular diagnosis in low-resource settings. Copyright © 2015 Elsevier B.V. All rights reserved.

  7. Comparison of two immunoassay systems for hCGβ and PAPP-A in prenatal screening for trisomy 21, 18, and 13 in the first trimester

    Directory of Open Access Journals (Sweden)

    Anna Elise Engell

    2017-12-01

    Full Text Available Objectives: The biochemical serum markers free β-human chorionic gonadotropin (hCGβ and pregnancy associated plasma protein A (PAPP-A, used in screening for trisomy 21 (T21, trisomy 18 (T18, and trisomy 13 (T13 during the first trimester, can be measured on different laboratory instruments e.g. Kryptor (Brahms and Cobas (Roche. We compared the performance of these two analytical instruments when used for first trimester combined testing. Design and methods: Serum samples from 944 singleton pregnant women attending for first trimester combined testing were routinely assayed for hCGβ and PAPP-A on Kryptor, and re-analyzed on Cobas. In addition, serum samples from 70 pregnant women carrying a fetus affected by T21, T18 or T13, were re-assayed on Cobas. Results: For the screening population, the hCGβ and PAPP-A results in multiples of the median (MoM from Kryptor and Cobas were significantly lower on Cobas when compared to Kryptor. The number of pregnant women with a risk above 1:300 for T21 was 48 for both Cobas and Kryptor, although a few patients only had a high risk with one of the methods. Overall, the screen positive rate was 5.1% for both instruments. In the trisomy groups the calculated risks for T21, T18, and T13 agreed well between Cobas and Kryptor. Conclusions: The screen positive rate for T21 (5.1% did not differ between the two analytical platforms in our screening population, although PAPP-A measurements form Cobas were significantly lower than those from Kryptor. The calculated risks for the pregnancies affected by trisomies using hCGβ MoM and PAPP-A MoM from Kryptor agreed well with those from Cobas. Keywords: Aneuploidy, Combined first trimester screening, First trimester risk assessment, Free β-human chorionic gonadotropin (hCGβ, Pregnancy associated plasma protein-A (PAPP-A, Trisomy screening

  8. Vitamin B12 absorption judged by measurement of holotranscobalamin, active vitamin B12: evaluation of a commercially available EIA kit.

    Science.gov (United States)

    Greibe, Eva; Nexo, Ebba

    2011-11-01

    Active vitamin B12 absorption is followed by an increase in holotranscobalamin (holoTC) upon loading with a high physiological dose of the vitamin (the CobaSorb test). This study evaluates the use of a newly launched EIA kit for measurement of holoTC (active B12) in relation to the CobaSorb test. Intra-assay imprecision and linearity of the EIA kit was examined, employing serum pools of increasing holoTC concentrations. For the CobaSorb test, holoTC was measured before and after loading with 3-times 9 μg of vitamin B12 employing both the in-house ELISA and the EIA kit (n=25). The EIA kit showed an intra-assay CV between 2.2% and 5.8% for holoTC values ranging from 21 to 80 pmol/L. Employing diluted serum samples resulted in spurious high values of holoTC. The EIA kit performed well in relation to the CobaSorb test and classified the patients studied as capable of absorbing vitamin B12 (n=10) or not (n=15), as did the in-house ELISA. The Active B12 (holoTC) EIA kit proved suitable for use with the CobaSorb test, but not for analysis of diluted serum samples.

  9. Development of Fe-based superconducting wires for liquid-hydrogen level sensors

    Science.gov (United States)

    Ishida, S.; Tsuchiya, Y.; Mawatari, Y.; Eisaki, H.; Nakano, A.; Yoshida, Y.

    2017-07-01

    We developed liquid-hydrogen (LH2) level sensors with Ba(Fe1-x Co x )2As2 superconducting wires (Co-Ba122 wires) as their detection elements. We fabricated Co-Ba122 wires with different Co concentrations x by using the powder-in-tube method. The superconducting transition temperatures of the wires were successfully controlled in the range of 20-25 K by changing x from 0.06 to 0.10. The resistance-temperature curves of the wires exhibited sharp superconducting transitions with widths of 0.5-1.0 K. In addition, we performed an operation test of the Co-Ba122 level sensors with LH2. Close correspondence between the output resistance and the actual LH2 level was observed for a sensor equipped with x = 0.09 wire, demonstrating that this sensor can accurately measure LH2 levels.

  10. Automated processing, extraction and detection of herpes simplex virus types 1 and 2: A comparative evaluation of three commercial platforms using clinical specimens.

    Science.gov (United States)

    Binnicker, Matthew J; Espy, Mark J; Duresko, Brian; Irish, Cole; Mandrekar, Jay

    2017-04-01

    Recently, automated platforms have been developed that can perform processing, extraction and testing for herpes simplex virus (HSV) nucleic acid on a single instrument. In this study, we compared three commercially-available systems; Aptima ® /Panther (Hologic, San Diego, CA), ARIES ® (Luminex Corporation, Austin, TX), and cobas ® 4800 (Roche Molecular Systems Inc, Pleasanton, CA) for the qualitative detection of HSV-1/2 in clinical samples. Two-hundred seventy-seven specimens (genital [n=193], dermal [n=84]) were submitted for routine HSV-1/2 real-time PCR by a laboratory developed test. Following routine testing, samples were also tested by the Aptima, ARIES, and cobas HSV-1/2 assays per the manufacturer's recommendations. Results were compared to a "consensus standard" defined as the result obtained from ≥3 of the 4 assays. Following testing of 277 specimens, the cobas and ARIES assays demonstrated a sensitivity of 100% for HSV-1 (61/61) and HSV-2 (55/55). The Aptima assays showed a sensitivity of 91.8% (56/61) for HSV-1 and 90.9% (50/55) for HSV-2. Percent specificities for HSV-1 were 96.2% (202/210) by cobas, 99.5% (209/210) by ARIES and 100% (236/236) by Aptima. For HSV-2, the specificities were 98.1% (211/215) by cobas, 99.5% (215/216) by ARIES and 100% (216/216) by Aptima. The turnaround time for testing 24 samples was 2.5h by the cobas 4800, 3.1h by Aptima/Panther, and 3.9h by ARIES. The three commercial systems can perform all current functions on a single platform, thereby improving workflow and potentially reducing errors associated with manual processing of samples. Copyright © 2017 Elsevier B.V. All rights reserved.

  11. A European multicientre study on the comparison of HIV-1 viral loads between VERIS HIV-1 Assay and Roche COBAS® TAQMAN® HIV-1 test, Abbott RealTime HIV-1 Assay, and Siemens VERSANT HIV-1 Assay.

    Science.gov (United States)

    Braun, Patrick; Delgado, Rafael; Drago, Monica; Fanti, Diana; Fleury, Hervé; Hofmann, Jörg; Izopet, Jacques; Kühn, Sebastian; Lombardi, Alessandra; Mancon, Alessandro; Marcos, Mª Angeles; Mileto, Davide; Sauné, Karine; O'Shea, Siobhan; Pérez-Rivilla, Alfredo; Ramble, John; Trimoulet, Pascale; Vila, Jordi; Whittaker, Duncan; Artus, Alain; Rhodes, Daniel

    2017-07-01

    Viral load monitoring is essential for patients under treatment for HIV. Beckman Coulter has developed the VERIS HIV-1 Assay for use on the novel, automated DxN VERIS Molecular Diagnostics System. ¥ OBJECTIVES: Evaluation of the clinical performance of the new quantitative VERIS HIV-1 Assay at multiple EU laboratories. Method comparison with the VERIS HIV-1 Assay was performed with 415 specimens at 5 sites tested with COBAS ® AmpliPrep/COBAS ® TaqMan ® HIV-1 Test, v2.0, 169 specimens at 3 sites tested with RealTime HIV-1 Assay, and 202 specimens from 2 sites tested with VERSANT HIV-1 Assay. Patient monitoring sample results from 4 sites were also compared. Bland-Altman analysis showed the average bias between VERIS HIV-1 Assay and COBAS HIV-1 Test, RealTime HIV-1 Assay, and VERSANT HIV-1 Assay to be 0.28, 0.39, and 0.61 log 10 cp/mL, respectively. Bias at low end levels below 1000cp/mL showed predicted bias to be <0.3 log 10 cp/mL for VERIS HIV-1 Assay versus COBAS HIV-1 Test and RealTime HIV-1 Assay, and <0.5 log 10 cp/mL versus VERSANT HIV-1 Assay. Analysis on 174 specimens tested with the 0.175mL volume VERIS HIV-1 Assay and COBAS HIV-1 Test showed average bias of 0.39 log 10 cp/mL. Patient monitoring results using VERIS HIV-1 Assay demonstrated similar viral load trends over time to all comparators. The VERIS HIV-1 Assay for use on the DxN VERIS System demonstrated comparable clinical performance to COBAS ® HIV-1 Test, RealTime HIV-1 Assay, and VERSANT HIV-1 Assay. Copyright © 2017 Elsevier B.V. All rights reserved.

  12. Comparison of three human papillomavirus DNA assays and one mRNA assay in women with abnormal cytology

    DEFF Research Database (Denmark)

    Rebolj, Matejka; Lynge, Elsebeth; Ejegod, Ditte

    2014-01-01

    no follow-up, 232 (63%) had cancer. The sensitivity for ≥CIN3 was 95% (95% CI: 88-99) for HC2, 94% (95% CI: 87-98) for cobas, 93% (95% CI: 85-97) for CLART, and 87% (95% CI: 78-93) for APTIMA. In women of age above 30 years......, the sensitivities were 98% (95% CI: 87-100), 93% (95% CI: 80-98), 90% (95% CI: 77-97), and 93% (95% CI: 80-98), respectively. One woman with cervical cancer tested negative on CLART and one on cobas; HC2 and APTIMA were positive in all three cancer cases. The specificity for

  13. PENGEMBANGAN BUKU AJAR BIOLOGI SEL DENGAN PENDEKATAN BIOINFORMATIKA

    Directory of Open Access Journals (Sweden)

    Ardini Pangastuti

    2016-02-01

    Buku ajar merupakan buku panduan pembelajaran yang digunakan oleh siswa guna membantu mencapai tujuan pendidikan nasional. Pengembangan buku ajar merupakan salah satu cara yang dilakukan untuk memfasilitasi tercapainya indikator pembelajaran. Pengembangan buku ajar Biologi Sel dengan pendekatan Bioinformatika menggunakan model pengembangan Dick and Carey. Buku ajar yang dikembangkan divalidasi oleh ahli materi, ahli media pembelajaran, 15 mahasiswa uji coba perorangan, dan 15 mahasiswa uji coba kelompok sedang. Hasil validasi ahli materi menyatakan layak sebesar 84% dengan kategori baik. Hasil validasi ahli media pembelajaran menyatakan layak sebesar 82,4% dengan kategori baik.

  14. BoHV-4-Based Vector Single Heterologous Antigen Delivery Protects STAT1(-/- Mice from Monkeypoxvirus Lethal Challenge.

    Directory of Open Access Journals (Sweden)

    Valentina Franceschi

    2015-06-01

    Full Text Available Monkeypox virus (MPXV is the etiological agent of human (MPX. It is an emerging orthopoxvirus zoonosis in the tropical rain forest of Africa and is endemic in the Congo-basin and sporadic in West Africa; it remains a tropical neglected disease of persons in impoverished rural areas. Interaction of the human population with wildlife increases human infection with MPX virus (MPXV, and infection from human to human is possible. Smallpox vaccination provides good cross-protection against MPX; however, the vaccination campaign ended in Africa in 1980, meaning that a large proportion of the population is currently unprotected against MPXV infection. Disease control hinges on deterring zoonotic exposure to the virus and, barring that, interrupting person-to-person spread. However, there are no FDA-approved therapies against MPX, and current vaccines are limited due to safety concerns. For this reason, new studies on pathogenesis, prophylaxis and therapeutics are still of great interest, not only for the scientific community but also for the governments concerned that MPXV could be used as a bioterror agent. In the present study, a new vaccination strategy approach based on three recombinant bovine herpesvirus 4 (BoHV-4 vectors, each expressing different MPXV glycoproteins, A29L, M1R and B6R were investigated in terms of protection from a lethal MPXV challenge in STAT1 knockout mice. BoHV-4-A-CMV-A29LgD106ΔTK, BoHV-4-A-EF1α-M1RgD106ΔTK and BoHV-4-A-EF1α-B6RgD106ΔTK were successfully constructed by recombineering, and their capacity to express their transgene was demonstrated. A small challenge study was performed, and all three recombinant BoHV-4 appeared safe (no weight-loss or obvious adverse events following intraperitoneal administration. Further, BoHV-4-A-EF1α-M1RgD106ΔTK alone or in combination with BoHV-4-A-CMV-A29LgD106ΔTK and BoHV-4-A-EF1α-B6RgD106ΔTK, was shown to be able to protect, 100% alone and 80% in combination, STAT1(-/- mice

  15. Detection of infectious bursal disease virus in various lymphoid tissues of experimentally infected specific pathogen free chickens by different reverse transcription polymerase chain reaction assays

    DEFF Research Database (Denmark)

    Kabell, Susanne; Handberg, Kurt; Kusk, Mette

    2005-01-01

    Infectious bursal disease (IBD) is a worldwide distributed immunosuppressive viral disease in young chickens, controlled by vaccination. Emergence of several strains of IBD virus (IBDV) has created a demand for strain-specific diagnostic tools. In the present experiment, five different reverse...... included vaccine strain D78, classical strain Faragher 52/70, and the very virulent Danish strain DK01 The presence of the virus infection was confirmed by histopathologic evaluation of bursa lesions. The largest number of positive samples was obtained with a strain-specific two-step multiplex (MPX) RT...

  16. MASTER prediscovery observations of SSS130101:122222-311525

    Science.gov (United States)

    Levato, H.; Saffe, C.; Mallamaci, C.; Lopez, C.; Podest, F.; Denisenko, D.; Lipunov, V.; Gorbovskoy, E.; Balanutsa, P.; Yecheistov, V.; Tiurina, N.; Kornilov, V.; Belinski, A.; Shatskiy, N.; Chazov, V.; Kuznetsov, A.; Zimnukhov, D.; Krushinsky, V.; Zalozhnih, I.; Popov, A.; Bourdanov, A.; Punanova, A.; Ivanov, K.; Yazev, S.; Budnev, N.; Konstantinov, E.; Chuvalaev, O.; Poleshchuk, V.; Gress, O.; Parkhomenko, A.; Tlatov, A.; Dormidontov, D.; Senik, V.; Yurkov, V.; Sergienko, Y.; Varda, D.; Sinyakov, E.; Shumkov, V.; Shurpakov, S.; Podvorotny, P.

    2013-01-01

    Following the announcement of a bright transient SSS130101:122222-311525 detected by CRTS (Drake et al., ATel #4699) we have checked the archival observations of this field by MASTER-ICATE very wide field camera (72-mm f/1.2 lens + 11 Mpx CCD, FOV=24x16 sq. deg.) located at OAFA near San Juan, Argentina. The object is present on two combined images obtained on 2012 Dec. 16.357 UT (total exposure time 122 sec) and 2012 Dec.

  17. PENGEMBANGAN PROTOTIPE EGG BOILER SEBAGAI MEDIA PEMBELAJARAN PRAKARYA DAN KEWIRAUSAHAAN UNTUK MATERI TEKNOLOGI TEPAT GUNA KELAS XI MIA SMA NEGERI 4 SINGARAJA TAHUN AJARAN 2016/2017

    Directory of Open Access Journals (Sweden)

    Indra Kusuma Harta

    2017-07-01

    Full Text Available Penelitian ini bertujuan untuk mengembangkan Prototipe Egg Boiler (Pengkukus Telur Otomatis sebagai media pembelajaran untuk mata pelajaran Prakarya dan Kewirausahaan pada materi Teknologi Tepat Guna di Kelas XI MIA SMA Negeri 4 Singaraja. Penelitian ini dilakukan dengan menggunakan metode Penelitian dan Pengembangan dalam bidang pendidikan. Hasil uji validasi ahli media memperoleh skor sebesar 0,75 dalam kategori tinggi. Uji validasi isi dengan nilai sebesar 0,81 dalam kategori sangat tinggi.  Sedangkan hasil uji coba perorangan dengan nilai sebesar 0.93, uji coba kelompok kecil dengan nilai sebesar 0.71, dan uji coba lapangan dengan nilai sebesar 0.82. Pada uji coba lapangan juga dilakukan dengan menganalisis nilai dari kegiatan praktikum, nilai yang diperoleh 87.4 dikategorikan dengan hasil belajar tinggi. Dari hasil nilai pre-test dan post-test tersebut secara keseluruhan mengalami peningkatan. Sehingga Pototipe Egg Boiler yang telah dikembangkan sangat membantu siswa dalam memahami materi dan praktikum mata pelajaran Prakarya dan Kewirausahaan untuk materi Teknologi Tepat Guna di Kelas XI MIA SMA Negeri 4 Singaraja.

  18. PERANGKAT LUNAK "DIGITAL SIGNAGE MANAGER"

    Directory of Open Access Journals (Sweden)

    Siti Rochimah

    2006-07-01

    Full Text Available Digital signage adalah suatu alat untuk menampilkan konten multimedia kepada umum. Digital signage pada umumnya terdiri dari dua komponen penting, yaitu manager dan player. Digital Signage Manager (DSM adalah suatu perangkat lunak yang mempunyai fungsi mengelola perangkat lunak Digital Signage Player (DSP. Pengelolaan ini menyangkut pengaturan dan pengiriman konten, pengaturan DSP, dan pengaturan konten yang ada di DSP. Pada penelitian ini telah dibangun sebuah perangkat lunak DSM, yang merupakan bentuk pengembangan dari perangkat lunak yang sebelumnya telah ada yaitu BZNP-100, yang tidak lain adalah perangkat lunak untuk mengelola Sony Network Player NSP-100. DSM dibangun dengan tujuan untuk melengkapi kekurangan dan menambah beberapa fitur tambahan yang belum ada pada perangkat lunak sebelumnya, seperti: mendukung material Flash, mengirim Content Delivery Disc (CDD, menjadwalkan playlist, dan mendukung dua layar. BZNP-100 dan Sony Network Player NSP-100 merupakan digital signage yang dibuat oleh perusahaan elektronik Sony Corporation pada tahun 2003.Uji coba perangkat lunak DSM ini dilakukan dengan menjalankan skenario uji coba berdasarkan fungsionalitas masing-masing fitur. Uji coba dilakukan pada masing-masing fitur antara lain: login, konfigurasi, pembuatan material, manajemen DSP, manajemen playlist, memainkan material dan playlist, dan manajemen remote material dan playlist. Hasil uji coba menunjukkan bahwa perangkat lunak DSM telah berfungsi sesuai dengan tujuan yang diharapkan.Kata kunci: Digital signage, Digital Signage Manager (DSM, Digital Signage Player (DSP, Content Delivery Disc (CDD, plasma TV,  LCD.

  19. Comparison of the Abbott RealTime CT new formulation assay with two other commercial assays for detection of wild-type and new variant strains of Chlamydia trachomatis

    DEFF Research Database (Denmark)

    Møller, Jens Kjølseth; Pedersen, Lisbeth Nørum; Persson, Kenneth

    2010-01-01

    In an analytical methods comparison study on clinical samples, the Abbott RealTime CT new formulation assay (m2000 real-time PCR) consisting of a duplex PCR targeting different parts of the cryptic plasmid in Chlamydia trachomatis was compared with version 2 of the Roche COBAS(R) TaqMan(R) CT ass...

  20. Enzymatic assay for methotrexate in erythrocytes

    DEFF Research Database (Denmark)

    Schrøder, H; Heinsvig, E M

    1985-01-01

    Methotrexate (MTX) accumulates in erythrocytes in MTX-treated patients. We present a modified enzymatic assay measuring MTX concentrations between 10 and 60 nmol/l in erythrocytes, adapted for a centrifugal analyser (Cobas Bio). About 40 patient's samples could be analysed within 1 h. The detection...

  1. Influence of biological variations and sample handling on measured microalbuminuria in diabetic patients

    NARCIS (Netherlands)

    Vermes, I.; Spooren, P.F.M.J.

    1992-01-01

    Five immunochemical assays for determining low concentrations of albumin were investigated. These were a radioimmunoassay (RIA); turbidimetric immunoassays (TIA) both according to end-point measuring principle on a Cobas Fara and Hitachi 717 analysers, and according to kinetic measuring principle on

  2. PENGEMBANGAN ASESMEN ALTERNATIF PRAKTIKUM KIMIA DASAR II MELALUI CHEMISTRY FAIR PROJECT (CFP BERBASIS KONSERVASI DENGAN MEMANFAATKAN DAILY CHEMICAL

    Directory of Open Access Journals (Sweden)

    Indah Urwatin Wusqo

    2016-12-01

    Full Text Available Penelitian ini bertujuan untuk (1 Mengembangkan asesmen alternatif pada praktikum kimia dasar II melalui chemistry fair project berbasis konservasi dengan memanfaatkan daily chemical(2 Mengetahui tingkat kevalidan, kepraktisan dan keefektifannya. Penelitian ini merupakan penelitian pengembangan (Development Research Model pengembangan yang diterapkan Dick dan Carey (1985. Subjek uji coba terbatas maupun subjek uji coba lapangan adalah dosen dan mahasiswa Prodi Pendidikan IPA UNNES. Sampel ditentukan secara purposive, yaitu dosen pengampu dan mahasiswa yang menempuh mata kuliah Praktikum Kimia Dasar II. Data yang diperoleh dari uji coba ini adalah: (1 masukan dari pakar, untuk menentukan validitas isi dan konstruk dari fitur asesmen; (2 masukan dari sampel uji coba terbatas, untuk menentukan kepraktisan petunjuk chemistry fair project (CFP berbasis konservasi dengan memanfaatkan daily chemical ; Instrumen pengumpul data berupa angket keterbacaan petunjuk pembuatan chemistry fair project (CFP berbasis konservasi dengan memanfaatkan daily chemical, pedoman penskoran. (3 data hasil belajar siswa untuk mengetahui efektivitas asesmen. Masukan dari pakar angket mahasiswa, dan nilai chemistry fair project (CFP sampel ujicoba terbatas dianalisis secara kualitatif, dan kuantitatif. Asesmen alternative Praktikum Kimia Dasar II yang dikembangkan dikatakan berhasil baik apabila asesmen yang dikembangkan valid, praktis, dan efektif.

  3. Kepatuhan Nahkoda Melakukan Pemeriksaan Boat Berdasarkan Check- List Harian untuk Keselamatan Pelayaran di Perusahaan Pelayaran

    OpenAIRE

    B, Rinto; Shaluhiyah, Zahroh; Kurniawan, Bina

    2012-01-01

    Terdapat penyimpangan prosedur dalam pemeriksaan boat berdasarkan checklist inspeksiyang sudah ada dimana rata-rata nahkoda melakukan pencontrengan checklist tanpamelakukan uji coba alat-alat keselamatan dan mesin di dalam boat. Tujuan penelitian iniadalah untuk mengeksplorasi gambaran tentang perilaku kepatuhan nahkoda di Perusahaanpelayaran ini dalam melakukan pemeriksaan boat berdasarkan checklist. Penelitian inimenggunakan metode penelitian kualitatif dengan melakukan wawancara yang menda...

  4. BRAF mutation testing in solid tumors: a methodological comparison.

    Science.gov (United States)

    Weyant, Grace W; Wisotzkey, Jeffrey D; Benko, Floyd A; Donaldson, Keri J

    2014-09-01

    Solid tumor genotyping has become standard of care for the characterization of proto-oncogene mutational status, which has traditionally been accomplished with Sanger sequencing. However, companion diagnostic assays and comparable laboratory-developed tests are becoming increasingly popular, such as the cobas 4800 BRAF V600 Mutation Test and the INFINITI KRAS-BRAF assay, respectively. This study evaluates and validates the analytical performance of the INFINITI KRAS-BRAF assay and compares concordance of BRAF status with two reference assays, the cobas test and Sanger sequencing. DNA extraction from FFPE tissue specimens was performed followed by multiplex PCR amplification and fluorescent label incorporation using allele-specific primer extension. Hybridization to a microarray, signal detection, and analysis were then performed. The limits of detection were determined by testing dilutions of mutant BRAF alleles within wild-type background DNA, and accuracy was calculated based on these results. The INFINITI KRAS-BRAF assay produced 100% concordance with the cobas test and Sanger sequencing and had sensitivity equivalent to the cobas assay. The INFINITI assay is repeatable with at least 95% accuracy in the detection of mutant and wild-type BRAF alleles. These results confirm that the INFINITI KRAS-BRAF assay is comparable to traditional sequencing and the Food and Drug Administration-approved companion diagnostic assay for the detection of BRAF mutations. Copyright © 2014 American Society for Investigative Pathology and the Association for Molecular Pathology. Published by Elsevier Inc. All rights reserved.

  5. Referral population studies underestimate differences between human papillomavirus assays in primary cervical screening

    DEFF Research Database (Denmark)

    Rebolj, M.; Njor, S.; Lynge, E.

    2017-01-01

    with SurePath® cytology, and Hybrid Capture 2 (HC2), cobas, CLART and APTIMA HPV assays. Women with positive test results were offered a follow-up. For all detected HPV infections and HPV-positive high-grade cervical intraepithelial neoplasia (≥CIN2), we studied the distributions of assay-specific signal...

  6. A daunting challenge

    DEFF Research Database (Denmark)

    Rebolj, Matejka; Bonde, Jesper; Ejegod, Ditte

    2015-01-01

    We compared cytology with Hybrid Capture 2 (HC2), cobas, CLART and APTIMA Human Papillomavirus (HPV) assays in primary cervical screening at age 23-29 years based on data from the Danish Horizon study. SurePath samples were collected from 1278 women undergoing routine cytology-based screening...

  7. Multicenter evaluation of the new Abbott Realtime assays for quantitative detection of human immunodeficiency virus type 1 and hepatitis C virus RNA

    NARCIS (Netherlands)

    M. Schutten (Martin); D. Peters (D.); N. Back (Nicole); A.W. van den Beld (Annewieke); B. Beuselinck (B.); V. Foulongne (V.); A.M. Geretti (Anna Maria); L. Pandiani (L.); M. Tiemann; H.G.M. Niesters (Bert)

    2007-01-01

    textabstractThe analytical performances of the new Abbott RealTime hepatitis C virus (HCV) and human immunodeficiency virus type 1 viral load assays were compared at nine laboratories with different competitor assays. These included the Abbott LcX, Bayer Versant bDNA, Roche COBAS Amplicor, and Roche

  8. PENGEMBANGAN MODEL LATIHAN KARATE KIDS PADA ANAK USIA SEKOLAH DASAR KELAS ATAS

    Directory of Open Access Journals (Sweden)

    Widha Srianto

    2014-09-01

    Full Text Available Penelitian ini bertujuan untuk menghasilkan model latihan karate kids pada anak usia sekolah dasar (SD kelas atas (10-12 tahun. Penelitian pengembangan ini dilakukan dengan mengadaptasi langkah-langkah penelitian sebagai berikut: (1 pengumpulan informasi di lapangan, (2 melakukan analisis terhadap informasi yang telah dikumpulkan, (3 mengembangkan produk awal, (4 validasi ahli dan revisi, (5 uji coba lapangan skala kecil dan revisi,  (6 uji coba lapangan skala besar dan revisi, dan (7 pembuatan produk final. Uji coba skala kecil dilakukan di klub Forki Kota Yogyakarta berjumlah 7 anak. Uji coba skala besar di klub Inkanas DIY berjumlah 16 anak. Instrumen pengumpulan data yang digunakan yaitu: (1 pedoman wawancara, (2 skala nilai, (3 pedoman observasi model, (4 pedoman observasi keefektifan model, dan (5 kuesioner untuk siswa. Teknik analisis data yang dilakukan yaitu analisis deskriptif kuantitatif dan analisis deskriptif kualitatif. Hasil penelitian ini berupa model latihan karate kids pada anak usia SD kelas atas (10-12 tahun yaitu: (1 model latihan maegeri, (2 model latihan gyaku tsuki, (3 model latihan mawashigeri, dan (4 model latihan oi tsuki. Dari hasil analisis data penilaian para ahli materi dan kuesioner anak, dapat ditarik kesimpulan bahwa model latihan karate kids pada anak usia SD kelas atas (10-12 tahun ini dinilai baik dan efektif. Kata kunci: model latihan, karate kids

  9. Assessment of efficacy and tolerability of once-daily extended release metformin in patients with type 2 diabetes mellitus

    Directory of Open Access Journals (Sweden)

    S Yu Vorotnikova

    2012-09-01

    Full Text Available Реферат по статье: Assessment of efficacy and tolerability of once-daily extended release metformin in patients with type 2 diabetes mellitus Juliana Levy, Roberta A Cobas, Marilia B Gomes. Diabetol Metab Syndr. 2010 Mar 18; 2:16.

  10. Nucleic acid amplification technology screening for hepatitis C virus and human immunodeficiency virus for blood donations

    International Nuclear Information System (INIS)

    Bamaga, Mohammad S.; Bokhari, Fawzi F.; Aboud, Abdulrehman M.; Al-Malki, M.; Alenzi, Faris Q.

    2006-01-01

    To investigate the performance of the commercial Roche COBAS AmpliScreen assay, and demonstrate whether the COBAS AmpliScreen human immunodeficiency virus-1 (HIV-1) test, v1.5, and COBAS AmpliScreen hepatitis C virus (HCV) v 2.0 for screening for HIV-1 and HCV RNA in the donated blood units from which plasma mini pools were collected, by nucleic acid amplification technology (NAT), could detect the positive pools and reduce the risk of transmission of infections for those routinely tested by serological assays. The study was performed on 3288 plasma samples collected from blood donors in a period of 13 months, from August 2004 to August 2005, at Al-Hada Armed Forces Hospital, Molecular Pathology Laboratory, Taif, Kingdom of Saudi Arabia. The samples were tested by the reverse transcriptase polymerase chain reaction (RT-PCR) after RNA extraction (this represents the major method in NAT assays), in parallel with the routine serological testing to detect qualitatively for HIV-1 and HCV. The NAT assays that include an automated COBAS AmpliPrep system for RNA extraction and COBAS Amplicor Analyzer using AmpliScreen kits for RT-PCR assays, and the routine serological screening assays for the detection of the HIV-1 and HCV RNA in the plasma samples from the blood donors have shown to be a reliable combination that would meet our requirements. The collected data further confirms the results from the serological assays and enables us to decrease the residual risk of transmission to a minimum with the finding of no seronegative window period donation. The results demonstrate that out of 3288 samples, the percentages of RT-PCR (NAT) negative blood donations that were also confirmed as seronegative were 99% for HCV, and 99.1% for HIV-1. The modified combined systems (automated COBAS AmpliPrep system for RNA extraction and COBAS Amplicor Analyzer using AmpliScreen kits for RT-PCR assays) for NAT screening assays has allowed the release of all blood donations supplied in the

  11. PENGEMBANGAN MEDIA KOMIK PEMBELAJARAN MATEMATIKA MENINGKATKAN MOTIVASI DAN PRESTASI BELAJAR SISWA KELAS V

    Directory of Open Access Journals (Sweden)

    Indaryati Indaryati

    2015-01-01

    Full Text Available Penelitian ini bertujuan menghasilkan produk media berupa komik pembelajaran matematika yang dapat meningkatkan motivasi dan prestasi belajar matematika siswa kelas V SD. Penelitian ini merupakan penelitian pengembangan, yang terdiri dari: (1 penelitian dan pengumpulan data, (2 perencanaan, (3 pengembangan draft produk, (4 uji coba lapangan awal,  (5 revisi hasil uji coba, (6 uji coba lapangan, (7 penyempurnaan produk hasil uji coba lapangan, (8 uji pelaksanaan lapangan, dan (9 penyempurnaan produk akhir. Subjek uji coba adalah siswa kelas V SDN Glagah Yogyakarta. Subjek uji coba satu-satu terdiri atas tiga orang siswa. Subjek uji coba kelompok kecil terdiri atas sembilan orang siswa yang belum terlibat dalam uji coba satu-satu, dan subjek uji lapangan terdiri atas 54 orang siswa dari kelas VB dan kelas VC yang tidak ikut dalam uji coba satu-satu dan uji coba kelompok kecil. Hasil penelitian menunjukkan bahwa media yang dikembangkan ini mendapatkan penilaian dari para ahli dengan kategori “baik”, penilaian guru dan siswa yang menggunakan media komik menyatakan praktis, sehingga media pembelajaran ini layak digunakan. Hasil uji lapangan menunjukkan media komik pembelajaran matematika yang digunakan dapat meningkatkan motivasi belajar siswa sebesar 0,65 tergolong dalam kategori sedang menurut skala gain, sedangkan prestasi belajar siswa sebesar 0,73 tergolong dalam kategori tinggi menurut skala gain. ____________________________________________________________________________________________________________________________________ DEVELOPING COMIC MEDIA FOR THE TEACHING OF MATHEMATICS TO ENCHANCE THE MOTIVATION AND MATHEMATICS LEARNING OUTCOMES GRADE V ABSTRACT This research aims to produce a product in the form of mathematics teaching comics which can improve motivation and learning achievement of students of grade V of SD. This research is research and development study consisting of nine stages, namely: (1 research and data collection, (2

  12. PENGEMBANGAN MULTIMEDIA CERITA RAKYAT SEBAGAI PENUMBUHAN KARAKTER SISWA

    Directory of Open Access Journals (Sweden)

    Kusmayadi Kusmayadi

    2017-07-01

    Full Text Available This study was aimed to test feasibility multimedia appreciation folklore charged character education for student junior grade VII. The approach that was undertaken use qualitative and quantitative reseach. Subject pilot this reseach is one expert learning, one person media expert learning, practitioner, 5 (six student on trial small group, and 30 (thirty student on trial a large group. The trial court implemented in Junior High School 1 Praya Lombok Middle east. The data was undertaken through observation, charging chief, and guide documentation. Analysis quantitative data done by counting the percentage feasibility the product of the people of learning, media experts, practitioner, the results of the small group and results of the test a large group. The results of data qualitative presented in the form of exposure to. The research results show multimedia learning on all the step of experiment try is at the percentage very reasonable to be used as a media learning. Penelitian ini bertujuan untuk menguji kelayakan multimedia apresiasi cerita rakyat bermuatan pendidikan karakter untuk siswa SMP Kelas VII. Pendekatan yang dilakukan menggunakan kualitatif dan kuantitatif. Subjek uji coba penelitian ini adalah satu orang ahli pembelajaran, satu orang ahli media pembelajaran, satu orang praktisi, enam siswa pada uji coba kelompok kecil, dan tiga puluh siswa pada uji coba kelompok besar. Uji coba lapangan dilaksanakan di SMPN 1 Praya Timur Lombok Tengah. Pengambilan data dilakukan melalui observasi, pengisian angket, dan panduan dokumentasi. Analisis data kuantitatif dilakukan dengan menghitung persentase kelayakan produk dari ahli pembelajaran, ahli media, praktisi, hasil uji kelompok kecil dan hasil uji kelompok besar. Hasil data kualitatif disajikan dalam bentuk paparan. Hasil penelitian menunjukkan multimedia pembelajaran pada semua tahap uji coba berada pada persentase sangat layak untuk digunakan sebagai media pembelajaran.

  13. Validation of a Human Papillomavirus (HPV) DNA Cervical Screening Test That Provides Expanded HPV Typing.

    Science.gov (United States)

    Demarco, Maria; Carter-Pokras, Olivia; Hyun, Noorie; Castle, Philip E; He, Xin; Dallal, Cher M; Chen, Jie; Gage, Julia C; Befano, Brian; Fetterman, Barbara; Lorey, Thomas; Poitras, Nancy; Raine-Bennett, Tina R; Wentzensen, Nicolas; Schiffman, Mark

    2018-05-01

    As cervical cancer screening shifts from cytology to human papillomavirus (HPV) testing, a major question is the clinical value of identifying individual HPV types. We aimed to validate Onclarity (Becton Dickinson Diagnostics, Sparks, MD), a nine-channel HPV test recently approved by the FDA, by assessing (i) the association of Onclarity types/channels with precancer/cancer; (ii) HPV type/channel agreement between the results of Onclarity and cobas (Roche Molecular Systems, Pleasanton, CA), another FDA-approved test; and (iii) Onclarity typing for all types/channels compared to typing results from a research assay (linear array [LA]; Roche). We compared Onclarity to histopathology, cobas, and LA. We tested a stratified random sample ( n = 9,701) of discarded routine clinical specimens that had tested positive by Hybrid Capture 2 (HC2; Qiagen, Germantown, MD). A subset had already been tested by cobas and LA ( n = 1,965). Cervical histopathology was ascertained from electronic health records. Hierarchical Onclarity channels showed a significant linear association with histological severity. Onclarity and cobas had excellent agreement on partial typing of HPV16, HPV18, and the other 12 types as a pool (sample-weighted kappa value of 0.83); cobas was slightly more sensitive for HPV18 and slightly less sensitive for the pooled high-risk types. Typing by Onclarity showed excellent agreement with types and groups of types identified by LA (kappa values from 0.80 for HPV39/68/35 to 0.97 for HPV16). Onclarity typing results corresponded well to histopathology and to an already validated HPV DNA test and could provide additional clinical typing if such discrimination is determined to be clinically desirable. This is a work of the U.S. Government and is not subject to copyright protection in the United States. Foreign copyrights may apply.

  14. Detection of cervical precancerous lesions with Aptima HPV assays using SurePath preservative fluid specimens

    Directory of Open Access Journals (Sweden)

    Max Chernesky

    2017-06-01

    Full Text Available SurePath specimens from women referred to colposcopy were treated with Aptima Transfer Solution (ATS before testing in Aptima HPV (AHPV and Aptima HPV 16, 18/45 (AHPV-GT assays. Untreated SurePath specimens were tested with the cobas HPV test. PreservCyt specimens were assessed for cytology and tested with AHPV. High-grade cervical intraepithelial neoplasia lesions served as the reference standard. Excellent agreement (95.5%; k=0.91 was observed for ATS-treated SurePath specimens between Tigris and Panther systems and between the PreservCyt and ATS-treated SurePath specimens (91.1%, k=0.81 with the AHPV assay on Tigris. Agreement between the AHPV and cobas assays with SurePath specimens was substantial (89.9%, k=0.80. AHPV sensitivity for CIN2+(n=147 was 91.2% for SurePath and PreservCyt. Cobas HPV sensitivity was 93.9% for SurePath specimens. AHPV testing of SurePath specimens was more specific (59.4% than cobas (54.7% (p<0.001. Detection and genotyping showed similar absolute and relative risks. ATS-treated SurePath specimens tested with AHPV and AHPV-GT assays showed similar performance with greater specificity than cobas HPV on SurePath specimens. Similar overall results were seen using a CIN3 disease endpoint. Keywords: Human papillomavirus, SurePath, PreservCyt, Cervical intraepithelial neoplasia, CIN2+, Aptima transfer solution (ATS

  15. A Comparative Study for Detection of EGFR Mutations in Plasma Cell-Free DNA in Korean Clinical Diagnostic Laboratories

    Directory of Open Access Journals (Sweden)

    Yoonjung Kim

    2018-01-01

    Full Text Available Liquid biopsies to genotype the epidermal growth factor receptor (EGFR for targeted therapy have been implemented in clinical decision-making in the field of lung cancer, but harmonization of detection methods is still scarce among clinical laboratories. We performed a pilot external quality assurance (EQA scheme to harmonize circulating tumor DNA testing among laboratories. For EQA, we created materials containing different levels of spiked cell-free DNA (cfDNA in normal plasma. The limit of detection (LOD of the cobas® EGFR Mutation Test v2 (Roche Molecular Systems was also evaluated. From November 2016 to June 2017, seven clinical diagnostic laboratories participated in the EQA program. The majority (98.94% of results obtained using the cobas assay and next-generation sequencing (NGS were acceptable. Quantitative results from the cobas assay were positively correlated with allele frequencies derived from digital droplet PCR measurements and showed good reproducibility among laboratories. The LOD of the cobas assay was 5~27 copies/mL for p.E746_A750del (exon 19 deletion, 35~70 copies/mL for p.L858R, 18~36 copies/mL for p.T790M, and 15~31 copies/mL for p.A767_V769dup (exon 20 insertion. Deep sequencing of materials (>100,000X depth of coverage resulted in detection of low-level targets present at frequencies of 0.06~0.13%. Our results indicate that the cobas assay is a reliable and rapid method for detecting EGFR mutations in plasma cfDNA. Careful interpretation is particularly important for p.T790M detection in the setting of relapse. Individual laboratories should optimize NGS performance to maximize clinical utility.

  16. Persistent Oxytetracycline Exposure Induces an Inflammatory Process That Improves Regenerative Capacity in Zebrafish Larvae

    Science.gov (United States)

    Barros-Becker, Francisco; Romero, Jaime; Pulgar, Alvaro; Feijóo, Carmen G.

    2012-01-01

    Background The excessive use of antibiotics in aquaculture can adversely affect not only the environment, but also fish themselves. In this regard, there is evidence that some antibiotics can activate the immune system and reduce their effectiveness. None of those studies consider in detail the adverse inflammatory effect that the antibiotic remaining in the water may cause to the fish. In this work, we use the zebrafish to analyze quantitatively the effects of persistent exposure to oxytetracycline, the most common antibiotic used in fish farming. Methodology We developed a quantitative assay in which we exposed zebrafish larvae to oxytetracycline for a period of 24 to 96 hrs. In order to determinate if the exposure causes any inflammation reaction, we evaluated neutrophils infiltration and quantified their total number analyzing the Tg(mpx:GFP)i114 transgenic line by fluorescence stereoscope, microscope and flow cytometry respectively. On the other hand, we characterized the process at a molecular level by analyzing several immune markers (il-1β, il-10, lysC, mpx, cyp1a) at different time points by qPCR. Finally, we evaluated the influence of the inflammation triggered by oxytetracycline on the regeneration capacity in the lateral line. Conclusions Our results suggest that after 48 hours of exposure, the oxytetracycline triggered a widespread inflammation process that persisted until 96 hours of exposure. Interestingly, larvae that developed an inflammation process showed an improved regeneration capacity in the mechanosensory system lateral line. PMID:22590621

  17. Short Communication: Testosterone Measured with an Automatic Immunoassay Compares Reasonbly Well to Results Obtained by LC-MS/MS

    DEFF Research Database (Denmark)

    Knudsen, Cindy Søndersø; Højskov, Carsten Schriver; Møller, Holger Jon

    2016-01-01

    Background: Previous studies have reported problems measuring testosterone with immunological assays. Here we explore an automatic second generation immunoassay compared to a LC-MS/MS method. Methods: We collected blood samples from 76 women and measured testosterone, progesterone, gender...... hormonebinding globulin (SHBG), and albumin employing Cobas e601/c501. Testosterone, androstenedione (andro), dehydroepiandrosterone sulphate (DHEAS), and 17-hydroxyprogesterone (17-OHP) concentrations were measured employing LC-MS/MS. We evaluated the difference between testosterone measured by the two methods...... and examined the potential interference from the selected steroids and bindings proteins. Results: Testosterone concentrations measured by the two methods yielded: Cobas e601 = 1.240 x (LC-MS/MS) - 0.197, r = 0.84, for testosterone concentrations between 0.22 - 4.9 nmol/L. A positive correlation was observed...

  18. PENGEMBANGAN MEDIA PEMBELAJARAN PENDIDIKAN JASMANI OLAHRAGA DAN KESEHATAN BERBASIS KOMPUTER UNTUK SMA

    Directory of Open Access Journals (Sweden)

    Suci Cahyati

    2014-04-01

    Full Text Available Penelitian ini bertujuan untuk menghasilkan produk berupa CD pembelajaran pendidikan jasmani olahraga dan kesehatan berbasis komputer untuk SMA yang valid dan efektif. Penelitian ini menggunakan metode Research and Development (R&D. Media yang dikembangkan memuat materi tentang HIV/AIDS. Pengembangan media pembelajaran ini menggunakan software Adobe Flash Cs3 Professional. Media yang telah dikembangkan melalui dua tahap penelitiannya itu validasi ahli dan uji coba lapangan. Berdasarkan validasi ahli dan uji coba lapangan hasil penelitian menunjukkan produk termasuk kriteria “Sangat baik” dengan rerata skor 4,25. Hasil tes siswa mengalami peningkatan dari rerata skor pretest 5,53 dan rerata skor posttest 7,56. Berdasarkan hasil tes tersebut dapat disimpulkan bahwa media pembelajaran pendidikan jasmani olahraga dan kesehatan efektif digunakan dalam pembelajaran di SMA. Kata kunci: Pengembangan media, penjasorkes, SMA

  19. Implementasi Algoritma Particle Swarm untuk Menyelesaikan Sistem Persamaan Nonlinear

    Directory of Open Access Journals (Sweden)

    Ardiana Rosita

    2012-09-01

    Full Text Available Penyelesaian sistem persamaan nonlinear merupakan salah satu permasalahan yang sulit pada komputasi numerik dan berbagai aplikasi teknik. Beberapa metode telah dikembangkan untuk menyelesaikan sistem persamaan ini dan metode Newton merupakan metode yang paling sering digunakan. Namun metode ini memerlukan perkiraan solusi awal dan memilih perkiraan solusi awal yang baik untuk sebagian besar sistem persamaan nonlinear tidaklah mudah. Pada makalah ini, algoritma Particle Swarm yang diusulkan oleh Jaberipour dan kawan-kawan[1] diimplementasikan. Algoritma ini merupakan pengembangan dari algoritma Particle Swarm Optimization (PSO. Algoritma ini meyelesaikan sistem persamaan nonlinear yang sebelumnya telah diubah menjadi permasalahan optimasi. Uji coba dilakukan terhadap beberapa fungsi dan sistem persamaan nonlinear untuk menguji kinerja dan efisiensi algoritma. Berdasarkan hasil uji coba, beberapa fungsi dan sistem persamaan nonlinear telah konvergen pada iterasi ke 10 sampai 20 dan terdapat fungsi yang konvergen pada iterasi ke 200. Selain itu, solusi yang dihasilkan algoritma Particle Swarm mendekati solusi eksak.

  20. Detection of EGFR mutations in plasma and biopsies from non-small cell lung cancer patients by allele-specific PCR assays

    DEFF Research Database (Denmark)

    Weber, Britta; Meldgaard, Peter; Hager, Henrik

    2014-01-01

    samples with allele-specific PCR assays. METHODS: Pairs of the diagnostic biopsy and plasma obtained just prior to start of erlotinib treatment were collected from 199 patients with adenocarcinoma of non-small-cell lung cancer. DNA from both sample types was isolated and examined for the presence...... of mutations in exons 18-21 of the EGFR gene, employing the cobas(®) EGFR Tissue Test and cobas(®) EGFR Blood Test (in development, Roche Molecular Systems, Inc., CA, USA). RESULTS: Test results were obtained in all 199 (100%) plasma samples and 196/199 (98%) of the biopsies. EGFR-activating mutations were...... identified in 24/199 (12%) plasma samples and 28/196 (14%) biopsy samples, and 17/196 (9%) matched pairs contained the same mutation. Six EGFR mutations were present only in plasma samples but not in the biopsy samples. The overall concordance of the EGFR gene mutations detected in plasma and biopsy tissue...

  1. Pemanfaatan Augmented Reality Pada Permainan Othello

    Directory of Open Access Journals (Sweden)

    Rendy Layman Aguston

    2016-11-01

    Full Text Available Perkembangan teknologi telah mengubah cara pengerjaan suatu pekerjaan dari cara konvensional menjadi cara yang lebih praktis. Dengan hadirnya teknologi Augmented Reality, cara bermain yang menggunakan pion dan membalikkan pion musuh secara manual menjadi lebih mudah dalam memainkan permainan selain juga dapat berinteraksi langsung. Pembuatan permainan Othello menggunakan program Unity dengan framework Vuforia untuk mewujudkan Augmented Reality pada permainan Othello. Untuk menerapkan Augmented Reality dengan baik, dibutuhkan papan permainan sebagai image target yang sesuai dengan kriteria, jenis kamera yang digunakan, jarak kamera terhadap papan permainan, intensitas cahaya yang ditangkap kamera, serta tingkat sensitivitas tombol virtual. Pada permainan Othello ini tersedia fitur komputer yang menggunakan algoritma Alpha Beta Pruning dengan 3 level kedalaman yang menggunakan perhitungan fungsi evaluasi berupa mobility, potential mobility dan penguasaan corner yang menghasilkan kemenangan mencapai 73,33% dari 15 kali uji coba terhadap aplikasi Othello serupa dan 78,34% dari 37 kali uji coba terhadap user.

  2. Concordance in BRAF V600E status over time in malignant melanoma and corresponding metastases

    DEFF Research Database (Denmark)

    Nielsen, Line Bjerrehave; Dabrosin, Nina; Sloth, Karen

    2017-01-01

    of inter-tumour heterogeneity between the primary tumour and the corresponding metastases, time as a factor was also investigated. METHODS: In total, 227 samples from 224 melanoma patients were analysed using both the Cobas® 4800 BRAF V600 Mutation test and IHC anti-BRAF V600E staining. In 82 primary......AIMS: The present study analysed the usability of an immunohistochemical (IHC) analysis compared to a frequently used mutation detection analysis and examined the extent of intra- and inter-tumour heterogeneity of BRAF V600E in primary tumours and their corresponding metastases. In the development...... tumours and 224 corresponding metastases, the extent of inter- and intra-tumour heterogeneity was investigated using IHC staining. RESULTS: In 15 cases, disagreement between IHC analysis and the Cobas test was seen. In all but one of the examined patients, homogeneity between the primary tumour...

  3. Pengembangan Modul Fisika Pokok Bahasan Hukum Newton bagi Anak Berkebutuhan Khusus (Tunanetra Di Kelas Inklusi SMA/MA Kelas X

    Directory of Open Access Journals (Sweden)

    Fitriany Yudistia R

    2014-04-01

    Full Text Available Siswa tunanetra SMA Muhammadiyah 4 Yogyakarta, MAN Maguwoharjo dan SMAN 1 Sewon belum memiliki sumber belajar mandiri berupa modul Braille khususnya pada materi Hukum Newton. Berdasarkan kenyataan ini maka dibutuhkan sebuah sumber belajar yang didesain khusus bagi siswa tunanetra di kelas Inklusi yakni modul Braille pada pokok bahasan Hukum Newton.Telah dilakukan penelitian yang bertujuan untuk: (1 mengembangkan modul fisika pokok bahasan Hukum Newton untuk siswa tunanetra SMA/MA kelas X sebagai sumber belajar mandiri, (2 mengetahui kualitas modul fisika Braille materi Hukum Newton untuk siswa tunanetra SMA/MA kelas X, (3 mengetahui respon siswa terhadap modul fisika Braille yang telah dikembangkan.Penelitian ini merupakan penelitian R & D dengan model prosedural yang mengadaptasi dari pengembangan perangkat model 4-D, yakni Define, Design, Develop, and Disseminate. Instrumen penelitian berupa angket kualitas modul yaitu menggunakan skala Likert yang dibuat dalam bentuk checklist. Instrumen untuk siswa berupa angket respon siswa yaitu menggunakan skala Guttman yang dibuat dalam bentuk checklist. Modul dinilai kualitasnya oleh 3 ahli materi, 1 ahli media, dan 2 guru fisika SMA/MA. Kelayakan modul berdasarkan respon siswa pada uji coba terbatas sebanyak 2 siswa dan uji coba luas sebanyak 8 siswa.Hasil penelitian berdasarkan penilaian dari ahli materi, ahli media dan guru fisika SMA/MA modul memiliki kategori sangat baik (SB. Persentase keidealan menurut ahli materi adalah 87,88%; persentase keidealan menurut ahli media adalah 90,00% dan persentase keidealan menurut guru Fisika SMA/MA adalah 75,00%. Respon siswa terhadap modul fisika Braille pada uji coba terbatas diperoleh persentase 97,22%; sedangkan pada uji coba luas diperoleh persentase 89,58%. Hasil penelitian ini menunjukkan bahwa modul layak dijadikan sebagai salah satu sumber belajar mandiri bagi siswa tunanetra.

  4. Quantification of intrahepatic total HBV DNA in liver biopsies of HBV-infected patients by a modified version of COBAS® Ampliprep/COBAS®TaqMan HBV test v2.0.

    Science.gov (United States)

    Salpini, Romina; Piermatteo, Lorenzo; Gill, Upkar; Battisti, Arianna; Stazi, Francesca; Guenci, Tania; Giannella, Sara; Serafini, Valentina; Kennedy, Patrick T F; Perno, Carlo Federico; Svicher, Valentina; Ciotti, Marco

    2017-08-01

    Intrahepatic total HBV DNA (it-HBV DNA) level might reflect the size of virus reservoir and correlate with the histological status of the liver. To quantitate it-HBV DNA in a series of 70 liver biopsies obtained from hepatitis B chronic patients, a modified version of the COBAS ® Ampliprep/COBAS ® TaqMan HBV test v2.0 was used for this purpose. The linearity and reproducibility of the modified protocol was tested by quantifying serial dilutions of a full-length HBV containing plasmid and it-HBV DNA from a reference patient. A good linear trend between the expected values and those generated by the assay was observed at different concentrations of both plasmid and reference patient (R 2  = 0.994 and 0.962, respectively). Differences between the values obtained in two independent runs were ≤0.3 log IU for the plasmid and ≤0.6 log IU/mg for the reference patient, showing a high inter-run reproducibility. In the 70 liver biopsies, it-HBV DNA level ranged from 1.4 to 5.4 log IU/mg, with a good linearity and reproducibility between the values obtained in two runs [R 2  = 0.981; median (IQR) difference of it-HBV DNA 0.05 (0.02-0.09) IU/mg]. The modified COBAS ® Ampliprep/COBAS ® TaqMan HBV test v2.0 allows an accurate quantitation of it-HBV DNA. Its determination may have prognostic value and may be a useful tool for the new therapeutic strategies aimed at eradicating the HBV infection.

  5. PENGEMBANGAN INSTRUMEN ASESMEN BERPIKIR KRITIS UNTUK SISWA SMP KELAS VII PADA MATERI INTERAKSI MAKHLUK HIDUP DENGAN LINGKUNGAN

    Directory of Open Access Journals (Sweden)

    Dharmawati Dharmawati

    2016-08-01

    Full Text Available This study aims to generate critical thinking assessment instrument for seven graders within organism interaction in an environment with an appropriate validity and reliability level. The design of this instrument is developed using stages suggested by Borg and Gall. The stages are researching and collecting information, planning, developing a preliminary product, conducting the limited examination, revising product from limited examination, field testing, revising product from field testing, and finalizing product. The result of content and construction validation shows that the level of feasibility is 88,35% and categorized as very feasible. While the degree of readability of assessment items is 93,51% and it is categorized as excellent. The coefficient of inter-rater reliability of assessment items is 0,951 and categorized as excellent. The instrument acquires reliability coefficient 0,792 for multiple choice and 0,753 for essay items. This study shows that the content, construction, and items in assessment are feasible. Penelitian ini bertujuan untuk menghasilkan instrumen asesmen berpikir kritis untuk siswa SMP kelas VII pada materi interaksi makhluk hidup dengan lingkungan dengan tingkat validitas dan reliabilitas yang memadai. Rancangan penelitian menggunakan model pengembangan menurut Borg & Gall, yang meliputi langkah-langkah: penelitian dan pengumpulan informasi, perencanaan, pengembangan produk awal, uji coba terbatas, revisi produk uji coba terbatas, uji coba lapangan, revisi uji coba produk lapangan, dan penyempurnaan produk akhir. Berdasarkan hasil validasi isi dan konstruk diperoleh tingkat kelayakan produk sebesar 88,35% berada pada kriteria sangat layak. Tingkat keterbacaan soal asesmen sebesar 93,51% dengan kategori sangat baik. Koefisien inter-rater reliability pada soal asesmen bentuk penugasan sebesar 0,951 dengan kategori sangat baik. Instrumen tersebut mempunyai koefisien reliabilitas sebesar 0,792 (soal pilihan ganda dan

  6. Evaluation of three methods for hemoglobin measurement in a blood donor setting

    Directory of Open Access Journals (Sweden)

    Jacob Rosenblit

    1999-05-01

    Full Text Available CONTEXT: The hemoglobin (Hb level is the most-used parameter for screening blood donors for the presence of anemia, one of the most-used methods for measuring Hb levels is based on photometric detection of cyanmetahemoglobin, as an alternative to this technology, HemoCue has developed a photometric method based on the determination of azide metahemoglobin. OBJECTIVE: To evaluate the performance of three methods for hemoglobin (Hb determination in a blood bank setting. DESIGN: Prospective study utilizing blood samples to compare methods for Hb determination. SETTING: Hemotherapy Service of the Hospital Israelita Albert Einstein, a private institution in the tertiary health care system. SAMPLE: Serial blood samples were collected from 259 individuals during the period from March to June 1996. MAIN MEASUREMENTS: Test performances and their comparisons were assessed by the analysis of coefficients of variation (CV, linear regression and mean differences. RESULTS: The CV for the three methods were: Coulter 0.68%, Cobas 0.82% and HemoCue 0.69%. There was no difference between the mean Hb determination for the three methods (p>0.05. The Coulter and Cobas methods showed the best agreement and the HemoCue method gave a lower Hb determination when compared to both the Coulter and Cobas methods. However, pairs of methods involving the HemoCue seem to have narrower limits of agreement (± 0.78 and ± 1.02 than the Coulter and Cobas combination (± 1.13. CONCLUSION: The three methods provide good agreement for hemoglobin determination.

  7. Pengembangan Instrumen Evaluasi Budi Pekerti Siswa SMU Negeri di Kabupaten Bantul

    Directory of Open Access Journals (Sweden)

    Esti Setiawati

    2014-07-01

    Full Text Available Penelitian ini bertujuan untuk mengembangkan instrumen evaluasi budi pekerti siswa SMU Negeri. Untuk itu perlu dirumuskan langkah-langkah pengembangan instrumen dan menyelidiki karakteristik instrumen tersebut. Subjek dalam penelitian ini adalah seluruh siswa SMU Negeri di Kabupaten Bantul. Penentuan banyaknya sampel dilakukan dengan teknik Purposive sampling sesuai dengan tujuan pengembangan. Instrumen penelitian ini adalah inventory Data dianalisis dengan analisis faktor. Hasil analisis data uji coba pengembangan Instrumen adalah: 1 Uji coba pertama dengan 85 butir, menunjukkan angka KMO and bartllets test sebesar 0,644 dengan p < 0,05. Setelah butir-butir tersebut dianalisis sejumlah, terdapat 11 butir yang tidak layak analisis yaitu butir 1, 2, 3, 5, 7, 8, 9, 10, 14, 32, dan butir 77 karena angka MSA < 0,5. Hasil pengujian ulang dengan 74 &117 butir menunjukkan angka KMO and Bartllets test sebesar 0,761 dengan p < 0,05, berarti mengalami kenaikan sebesar 0,117. Angka kumulatif muatan faktor sebesar 41,351 % dan nilai reliabilitas instrumen sebesar 0, 9656 2 Uji coba kedua dengan 85 butir hasil perbaikan instrumen uji coba pertama, menunjukkan angka KMO and Bartllets test sebesar 0,874 dengan p < 0,05. Setelah butir-butir tersebut dikenakan sejumlah pengujian, terdapat 1 butir yang tidak layak analisis yaitu butir 11 karena angka MSA < 0,5 hasil pengujian ulang dengan 84 butir menunjukkan angka KMO and Bartllets test sebesar 0,876 dengan P < 0,05, yang berarti mengalami kenaikan sebesar 0,002, sedangkan angka kumulatif muatan faktor sebesar 42,775% dan nilai reliabilitas Instrumen sebesar 0,9634. Hasil analisis data tersebut menunjukkan tingkat reliabilitas instrumen tergolong tinggi, namun validitas konstruk masih rendah. Kata kunci: pengembangan instrument, evaluasi budi pekerti.

  8. Hubungan Antara Persepsi Terhadap Beban Kerja Dengan Cyberloafing Pada Karyawan Biro Administrasi Umum Dan Keuangan Universitas Diponegoro

    OpenAIRE

    Ramadhan, Hafidz Ibnu; Nurtjahjanti, Harlina

    2017-01-01

    Penelitian ini bertujuan untuk mengetahui hubungan antara persepsi terhadap beban kerja dengan cyberloafing pada karyawan biro administrasi umum dan keuangan Universitas Diponegoro. Cyberloafing merupakan perilaku menggunakan berbagai jenis gadget, baik milik instansi ataupun milik pribadi dengan tujuan yang tidak berkaitan dengan pekerjaan yang dilakukan secara sadar oleh karyawan ditempat dan saat jam kerja. Penelitian ini memiliki sampel sebanyak 45 karyawan untuk uji coba skala dan 60 kar...

  9. A European multicientre study on the comparison of HBV viral loads between VERIS HBV assay and Roche COBAS® TAQMAN® HBV test, Abbott RealTime HBV assay, Siemens VERSANT HBV assay, and Qiagen artus HBV RG kit.

    Science.gov (United States)

    Braun, Patrick; Delgado, Rafael; Drago, Monica; Fanti, Diana; Fleury, Hervé; Izopet, Jacques; Lombardi, Alessandra; Marcos, MaAngeles; Sauné, Karine; O'Shea, Siobhan; Pérez-Rivilla, Alfredo; Ramble, John; Trimoulet, Pascale; Vila, Jordi; Whittaker, Duncan; Artus, Alain; Rhodes, Daniel

    2017-10-01

    Hepatitis B viral load testing is essential to treatment and monitoring decisions in patients with chronic Hepatitis B. Beckman Coulter has developed the VERIS HBV Assay (Veris) for use on the fully automated DxN VERIS Molecular Diagnostics System. 1 OBJECTIVES: To evaluate the clinical performance of the Veris HBV Assay at multiple EU laboratories STUDY DESIGN: Method comparison was performed with a total of 344 plasma specimens from HBV infected patients tested with Veris and COBAS ® TaqMan ® HBV Test (Cobas), 207 specimens tested with Veris and RealTime HBV Assay (RealTime), 86 specimens tested with Veris and VERSANT ® HBV Assay (Versant), and 74 specimens tested with Veris and artus ® HBV RG PCR kit (artus). Bland-Altman analysis showed average bias of -0.46 log 10 IU/mL between Veris and Cobas, -0.46 log 10 IU/mL between Veris and RealTime, -0.36 log 10 IU/mL between Veris and Versant, and -0.12 log 10 IU/mL between Veris and artus. Bias was consistent across the assay range. Patient monitoring results using Veris demonstrated similar viral load trends over time to Cobas, RealTime, and artus. The VERIS HBV Assay demonstrated comparable clinical performance, with varying degrees of negative bias, compared to other currently marketed assays for HBV DNA monitoring. This negative bias should be taken into consideration if switching monitoring methods to Veris. Copyright © 2017 Elsevier B.V. All rights reserved.

  10. PENGEMBANGAN MODEL PELATIHAN SOFT-SKILLS PADA SISWA SEKOLAH MENENGAH PERTAMA NEGERI (SMPN) DI KOTA MATARAM

    OpenAIRE

    Anik Darmiany

    2016-01-01

    Abstrak : Penelitian dan pengembangan ini bertujuan menghasilkan model pelatihan soft-skill khususnya keterampilan komunikasi dan kendali emosi siswa sekolah menengah pertama negeri (SMPN) di kota Mataram. Metode penelitian dan pengembangan dilakukan melalui tiga tahap dari sepuluh langkah Borg & Gall yaitu, (1) penelitian awal (analisis kebutuhan), (2) pengembangan model pelatihan, (3) uji coba dan evaluasi model. Hasil penelitian menunjukkan bahwa pengembangan model pelatihan soft-skill men...

  11. Benefit of Hepatitis C Virus Core Antigen Assay in Prediction of Therapeutic Response to Interferon and Ribavirin Combination Therapy

    OpenAIRE

    Takahashi, Masahiko; Saito, Hidetsugu; Higashimoto, Makiko; Atsukawa, Kazuhiro; Ishii, Hiromasa

    2005-01-01

    A highly sensitive second-generation hepatitis C virus (HCV) core antigen assay has recently been developed. We compared viral disappearance and first-phase kinetics between commercially available core antigen (Ag) assays, Lumipulse Ortho HCV Ag (Lumipulse-Ag), and a quantitative HCV RNA PCR assay, Cobas Amplicor HCV Monitor test, version 2 (Amplicor M), to estimate the predictive benefit of a sustained viral response (SVR) and non-SVR in 44 genotype 1b patients treated with interferon (IFN) ...

  12. Usutu virus infections among blood donors, Austria, July and August 2017 - Raising awareness for diagnostic challenges.

    Science.gov (United States)

    Bakonyi, Tamás; Jungbauer, Christof; Aberle, Stephan W; Kolodziejek, Jolanta; Dimmel, Katharina; Stiasny, Karin; Allerberger, Franz; Nowotny, Norbert

    2017-10-01

    Between July and August 2017, seven of 12,047 blood donations from eastern Austria, reacted positive to West Nile virus (WNV) in the cobas test (Roche). Follow-up investigations revealed Usutu virus (USUV) nucleic acid in six of these. Retrospective analyses of four blood donors diagnosed as WNV-infected in 2016 showed one USUV positive. Blood transfusion services and public health authorities in USUV-endemic areas should be aware of a possible increase of human USUV infections.

  13. Optimized methods to measure acetoacetate, 3-hydroxybutyrate, glycerol, alanine, pyruvate, lactate and glucose in human blood using a centrifugal analyser with a fluorimetric attachment

    OpenAIRE

    Stappenbeck, R.; Hodson, A. W.; Skillen, A. W.; Agius, L.; Alberti, K. G. M. M.

    1990-01-01

    Optimized methods are described for the analysis of glucose, lactate, pyruvate, alanine, glycerol, D-3-hydroxybutyrate and acetoacetate in perchloric acid extracts of human blood using the Cobas Bio centrifugal analyser. Glucose and lactate are measured using the photometric mode and other metabolites using the fluorimetric mode. The intra-assay coefficients of variation ranged from 0.7 to 4.1%, except with very low levels of pyruvate and acetoacetate where the coefficients of variation were ...

  14. PENGEMBANGAN MULTIMEDIA PEMBELAJARAN PATISERI UNTUK SISWA TINGKAT XI SMK

    Directory of Open Access Journals (Sweden)

    Tri Sunarmi

    2015-02-01

    Full Text Available Penelitian ini bertujuan untuk: 1 mengembangkan multimedia pembelajaran patiseri pada standar kompetensi mengolah kue pastry kontinental untuk siswa tingkat XI SMK yang layak dari aspek pembelajaran, materi, dan media; 2 mengetahui keefektifan multimedia pembelajaran patiseri yang dikembangan terhadap penguasaan kompetensi belajar mengolah kue pastry kontinental dilihat dari peningkatan skor tes hasil belajar. Jenis penelitian ini adalah penelitian dan pengembangan. Subyek penelitian adalah 36 siswa, untuk uji coba kelompok kecil dan uji coba lapangan. Validasi produk dilakukan oleh ahli materi dan ahli media. Selanjutnya data dianalisis dengan teknik analisis deskriptif.Hasil penilaian ahli materi dan ahli media menunjukkan bahwa kualitas multimedia “baik”. Penilaian siswa pada uji coba lapangan mengenai kualitas multimedia dari aspek pembelajaran,aspek materi dan aspek media “sangat baik“, dengan rerata skor dari ketiga aspek 4,49. Hasil pretes menunjukkan rerata sebesar 63,15 sedangkan rerata pada posttes sebesar 89,07. N-gain sebesar 0,72 termasuk kategori “tinggi”. Kesimpulannya: multimedia pembelajaran patiseri hasil pengembangan layak dignakan untuk media pembelajaran dan efektif untuk meningkatkan hasil belajar siswa.

  15. Droplet digital PCR-based EGFR mutation detection with an internal quality control index to determine the quality of DNA.

    Science.gov (United States)

    Kim, Sung-Su; Choi, Hyun-Jeung; Kim, Jin Ju; Kim, M Sun; Lee, In-Seon; Byun, Bohyun; Jia, Lina; Oh, Myung Ryurl; Moon, Youngho; Park, Sarah; Choi, Joon-Seok; Chae, Seoung Wan; Nam, Byung-Ho; Kim, Jin-Soo; Kim, Jihun; Min, Byung Soh; Lee, Jae Seok; Won, Jae-Kyung; Cho, Soo Youn; Choi, Yoon-La; Shin, Young Kee

    2018-01-11

    In clinical translational research and molecular in vitro diagnostics, a major challenge in the detection of genetic mutations is overcoming artefactual results caused by the low-quality of formalin-fixed paraffin-embedded tissue (FFPET)-derived DNA (FFPET-DNA). Here, we propose the use of an 'internal quality control (iQC) index' as a criterion for judging the minimum quality of DNA for PCR-based analyses. In a pre-clinical study comparing the results from droplet digital PCR-based EGFR mutation test (ddEGFR test) and qPCR-based EGFR mutation test (cobas EGFR test), iQC index ≥ 0.5 (iQC copies ≥ 500, using 3.3 ng of FFPET-DNA [1,000 genome equivalents]) was established, indicating that more than half of the input DNA was amplifiable. Using this criterion, we conducted a retrospective comparative clinical study of the ddEGFR and cobas EGFR tests for the detection of EGFR mutations in non-small cell lung cancer (NSCLC) FFPET-DNA samples. Compared with the cobas EGFR test, the ddEGFR test exhibited superior analytical performance and equivalent or higher clinical performance. Furthermore, iQC index is a reliable indicator of the quality of FFPET-DNA and could be used to prevent incorrect diagnoses arising from low-quality samples.

  16. Pengembangan Program Macromedia Flash 8 untuk Pembelajaran Fisika di SMA

    Directory of Open Access Journals (Sweden)

    Wiji Susilowati

    2007-12-01

    Full Text Available Tujuan penelitian adalah membuat dan mengevaluasi media pembelajaran fisika SMA menggunakan program Macromedia Flash 8. Subjek coba pada penelitian ini berjumlah 40 orang yang terdiri dari 10 siswa untuk uji coba instrumen penelitian, 10 siswa untuk ujicoba kelompok kecdl, dan 20 siswa untuk uji coba lapangan. Pengumpulan data dilakukan dengan mengguna­kan kuesioner dan tes fisika (pre-test dan post-test. Evaluasi terhadap program ditinjau dari aspek pembelajaran dan aspek media. Kritik dan saran digunakan untuk memperbaiki program. Hasil penelitian menunjukkan bahwa program Macromedia Flash 8 untuk pembelajaran fisika di SMA: (1 dirancang sesuai dengan prinsip-prinsip desain pembelajaran, (2 terbukti mampu menaikkan skor rerata tes fisika siswa sebesar 55,42%, (3 memiliki efisiensi waktu yang tinggi, (4 ditinjau dari aspek media Hinilai cukup bagus/menarik (dinilai/dikategorikan sedang oleh siswa, (5 ditinjau dari aspek pembelajaran secara keseluruhan program ini dinilai tinggi/jelas dimengerti oleh siswa, (6 ditinjau dari aspek media dinilai menarik (bagus/kategori tinggi oleh guru fisika, dan (7 ditinjau dari aspek pembelajaran juga dinilai menarik (bagus/kategori tinggi oleh guru fisika. Kata kunci: media pembelajaran fisika diSMA.

  17. Attenuation of monkeypox virus by deletion of genomic regions

    Science.gov (United States)

    Lopera, Juan G.; Falendysz, Elizabeth A.; Rocke, Tonie E.; Osorio, Jorge E.

    2015-01-01

    Monkeypox virus (MPXV) is an emerging pathogen from Africa that causes disease similar to smallpox. Two clades with different geographic distributions and virulence have been described. Here, we utilized bioinformatic tools to identify genomic regions in MPXV containing multiple virulence genes and explored their roles in pathogenicity; two selected regions were then deleted singularly or in combination. In vitro and in vivostudies indicated that these regions play a significant role in MPXV replication, tissue spread, and mortality in mice. Interestingly, while deletion of either region led to decreased virulence in mice, one region had no effect on in vitro replication. Deletion of both regions simultaneously also reduced cell culture replication and significantly increased the attenuation in vivo over either single deletion. Attenuated MPXV with genomic deletions present a safe and efficacious tool in the study of MPX pathogenesis and in the identification of genetic factors associated with virulence.

  18. View of the LHC tunnel with worker.

    CERN Multimedia

    Maximilien Brice

    2006-01-01

    The 616th dipole out of 1232, on its way to its final position in the tunnel of the LHC. Technicians and engineers continue to work day and night carefully installing 20 magnets a week. Each of the dipoles weighs 34 tonnes and is 15 m long. Once they have been lowered down the specially constructed shaft on the Meyrin site, they begin a slow progression to their final destinations in the LHC tunnel, taking about 10 hours to arrive at Point 6, the furthest point on the LHC ring. Upon arrival, each of the dipoles is aligned and interconnected to the magnets that are already installed.Bigger files available (39Mpx)

  19. SIMBIO-SYS for BepiColombo: status and issues.

    Science.gov (United States)

    Flamini, E.; Capaccioni, F.; Cremonese, G.; Palumbo, P.; Formaro, R.; Mugnuolo, R.; Debei, S.; Ficai Veltroni, I.; Dami, M.; Tommasi, L.; SIMBIO-SYS Team

    The SIMBIO-SYS (Spectrometer and Imaging for MPO BepiColombo Integrated Observatory SYStem) is a complex instrument suite part of the scientific payload of the Mercury Planetary Orbiter for the BepiColombo mission, the last of the cornerstone missions of the European Space Agency (ESA) Horizon+ science program. The BepiColombo mission is compose by two scientific satellites on, Mercury Magnetic Orbiter-MMO, realized by the Japanese Space Agency JAXA, devoted to the study of the planet environment and the other, the Mercury Planetary Orbiter realized by ESA, devoted to the detailed study of the Hermean surface and interior. The SIMBIOSYS instrument will provide all the science imaging capability of the Bepicolombo MPO spacecraft. It consists of three channels: the STereo imaging Channel (STC), with broad spectral band in the 400-950 nm range and medium spatial resolution (up to 50 m/px), that will provide Digital Terrain Model of the entire surface of the planet with an accuracy better than 80 m; the High Resolution Imaging Channel HRIC), with broad spectral bands in the 400-900 nm range and high spatial resolution (up to 5 m/px), that will provide high resolution images of about 20% of the surface, and the Visible and near-Infrared Hyperspectral Imaging channel (VIHI), with high spectral resolution (up to 6 nm) in the 400-2000 nm range and spatial resolution up to 100 m/px, it will provide the global covergae at 400 m/px with the spectral information. SIMBIO-SYS will provide unprecedented high-resolution images, the Digital Terrain Model of the entire surface, and the surface composition in wide spectral range, at resolutions and coverage higher than the MESSENGER mission with a full co-alignememt of the three channels. The main scientific objectives can be summarized as follows: Definition of the impact flux in the inner Solar System: based on the impact crater population records Understanding of the accretional model of an end member of the Solar System: based on

  20. Application of QRM approach in a chemical company

    Directory of Open Access Journals (Sweden)

    Carolina Belotti Pedroso

    2017-06-01

    Full Text Available The Quick Response Management (QRM has as its main goal lead time reduction in companies that offer a wide range of products. With the evolution of production paradigms and considering the current context in which organizations operate, the necessity of competition based on time is growing increasingly. Due to this, and in order to minimize them, this research focused on investigating the main causes of these long lead times in a company active in the chemical sector. The research started with a bibliographic review about the subject of QRM; the second part of the study consisted of field research and the use of a computer simulation application (MPX. Results from the research show the effectiveness of applying concepts from QRM for lead time reduction, whereby a reduction of around 50% in lead time was possible. This paper outlines contributions to the theories about the subject and collaborates to disseminate this issue, which is relatively scarce in Brazil, more broadly.

  1. Validation of a new HPV self-sampling device for cervical cancer screening: The Cervical and Self-Sample In Screening (CASSIS) study.

    Science.gov (United States)

    El-Zein, Mariam; Bouten, Sheila; Louvanto, Karolina; Gilbert, Lucy; Gotlieb, Walter; Hemmings, Robert; Behr, Marcel A; Franco, Eduardo L; Liang, Victoria; Martins, Claudia; Duarte, Silvy; Sarban, Natalia; Geddes, Patricia; Massa, Ana; Samios, Kathrin; Aboufadl, Siham; Verdon, Sophie; Pereria, Cynthia; Lacroix, Isabelle

    2018-04-17

    We compared the self-sampling performance of the newly designed HerSwab™ device with a physician-collected cervical sample and another self-sample using the cobas® PCR Female swab for the detection of cervical intraepithelial neoplasia (CIN) and cancer. Women referred for colposcopy at McGill University affiliated hospital clinics collected two consecutive self-samples, one with HerSwab™ and one with cobas® swab, after receiving instructions. The order of sampling was randomized. The colposcopist then collected a cervical sample and conducted a colposcopic examination. Samples were tested for human papillomavirus (HPV) DNA. Sensitivity and specificity to detect CIN2+ and respective 95% confidence intervals (CI) were calculated to compare sampling approaches. The HPV testing agreement between samples was measured using the Kappa statistic. Of 1217 women enrolled, 1076 had complete results for HPV and cytology; 148 (13.8%) had CIN1, 147 (13.7%) had CIN2/3, and 5 (0.5%) had cancer. There was very good agreement between methods for HPV detection (HerSwab™ versus physician: kappa=0.84; cobas® swabs versus physician: kappa=0.81; HerSwab™ versus cobas® swabs: kappa=0.87). The sensitivity of HPV detection for CIN2+ was 87.6% (95%CI: 79.8-93.2) with self-sampling using HerSwab™, 88.6% (95%CI: 80.9-94.0) with self-sampling using the cobas® swab, and 92.4% (95%CI: 85.5-96.7) with physician sampling. Corresponding estimates of specificity were 58.1% (95%CI: 54.1-62.1), 55.0% (95%CI: 50.9-59.0) and 58.7% (95%CI: 54.6-62.6). Cytology (ASC-US or more severe) done on the physician-collected specimen was 80.2% (95%CI: 70.8-87.6) sensitive and 61.4% (95%CI: 57.2-65.5) specific for CIN2+. The HerSwab™ had good agreement with physician sampling in detecting HPV, and adequate performance in detecting high-grade lesions among women referred to colposcopy for abnormal cytology. Copyright © 2018 Elsevier Inc. All rights reserved.

  2. PENGEMBANGAN SSP TEMATIK INTEGRATIF UNTUK MEMBANGUN KARAKTER KEJUJURAN DAN KEPEDULIAN SISWA SD KELAS II

    Directory of Open Access Journals (Sweden)

    Sri Hariyati Qodriyah

    2015-07-01

    Full Text Available Penelitian ini bertujuan untuk menghasilkan perangkat pembelajaran berupa SSP Tematik yang dapat mengembangkan karakter siswa kelas 2 sekolah dasar, meliputi karakter kejujuran dan kepedulian. Penelitian ini merupakan penelitian dan pengembangan yang terdiri dari tujuh tahap, yaitu studi pendahuluan, perencanaan, mengembangkan produk awal, uji coba awal, revisi produk utama, uji coba lapangan, dan revisi terhadap produk operasional. SSP yang dikembangkan dievaluasi oleh seorang ahli materi dan media untuk mengetahui validitasnya. Subjek uji coba berjumlah 90 siswa terdiri dari 23 siswa SD Sonosewu, Kasihan, Bantul, DIY sebagai subjek uji coba terbatas dan 33 siswa untuk kelas control dan 34 siswa untuk kelas eksperimen SD 1 Kadipiro, Kasihan, Bantul, DIY. Hasil penelitian ini berupa SSP yang meliputi: silabus, RPP, LKS, dan lembar penilaian. Hasil evaluasi dari ahli materi dan ahli media untuk menguji tingkat kevalidan SSP menyatakan bahwa SSP yang dikembangkan adalah valid dan berkategori “baik”. Hasil uji coba menunjukkan bahwa SSP yang dikembangkan dinyatakan layak serta memenuhi kriteria praktis dan efektif dalam mengembangkan karakter siswa. Pembelajaran dengan SSP yang dikembangkan mampu mengembangkan karakter kejujuran dan kepedulian. Kata Kunci: SSP, karakter jujur dan peduli   DEVELOPING THEMATIC INTEGRATIVE SSP FOR BUILDING THE CHARACTERS OF HONESTY AND CARE GRADE II STUDENT OF ELEMENTARY SCHOOL Abstract This study aims to produce integrated learning sets in the form of thematic SSP that can develop the characters of honesty and care of grade II students of elementary school. This was a research and development study consisting of seven steps, i.e. preliminary study, planning, preliminary product development, preliminary tryout, main product revision, field tryout, revision of operational product, operational product revision, and revision of the final product. The developed SSP was evaluated by a science subject expert to assess

  3. MODEL PERMAINAN AKTIVITAS LUAR KELAS UNTUK MENGEMBANGKAN RANAH KOGNITIF, AFEKTIF, DAN PSIKOMOTORIK SISWA SMA

    Directory of Open Access Journals (Sweden)

    Hendra Setyawan

    2015-10-01

    Full Text Available Penelitian ini bertujuan menghasilkan model-model permainan Aktivitas Luar kelas (ALK yang layak digunakan sebagai materi pembelajaran penjas, serta efektif untuk mengembangkan ranah kognitif, afektif, dan psikomotorik siswa SMA. Penelitian ini dilakukan dengan langkah-langkah sebagai berikut: (1 pengumpulan informasi di lapangan, (2 menganalisis informasi yang telah dikumpulkan, (3 mengembangkan produk awal, (4 validasi ahli dan revisi, (5 uji coba skala kecil dan  revisi, (6 uji coba skala besar dan revisi, dan (7 pembuatan produk final. Uji coba skala kecil dilakukan terhadap siswa kelas X-D dan XI-IPA 4 dari SMA N I Prambanan berjumlah 66 orang. Uji coba skala besar dilakukan terhadap siswa kelas X-G, X-H, XI-IPS 3, dan XI-BHS dari SMA N I Prambanan berjumlah 132 orang. Instrumen pengumpulan data yang digunakan yaitu; (1 pedoman wawancara, (2 skala nilai, (3 pedoman observasi permainan, (4 pedoman observasi keefektifan permainan, (5 pedoman observasi terhadap guru pelaku uji coba, dan (6 rubrik penilaian siswa. Teknik analisis data dengan analisis deskriptif kuantitatif dan kualitatif. Hasil penelitian berupa tujuh model permainan yang layak dan efektif digunakan dalam pembelajaran penjas, hal ini dibuktikan dengan perolehan persentase sebesar 100% dari data hasil kuesioner skala nilai, observasi model permainan, observasi keefektifan permainan, dan observasi guru pelaku uji coba. Model permainan juga efektif untuk mengembangkan ranah kognitif, afektif, dan psikomotorik, yang dibuktikan dengan terjadinya peningkatan persentase nilai rata-rata siswa sebesar 21%. Kata kunci: model, permainan, aktivitas luar kelas, kognitif, afektif, psikomotorik THE OUTDOOR ACTIVITY GAME MODEL TO DEVELOP THE ASPECT OF COGNITIVE, AFFECTIVE, AND PSYCHOMOTOR OF THE SENIOR HIGH SCHOOL STUDENTS Abstract This study aims at producing outdoor activity game models which are proper to be used for physicall education learning and developing cognitive, affective, and

  4. PENGEMBANGAN MODEL PEMBELAJARAN MALCOLM’S MODELING UNTUK MENINGKATKAN KETERAMPILAN BERPIKIR KRITIS DAN MOTIVASI BELAJAR SISWA

    Directory of Open Access Journals (Sweden)

    Syarifah Syarifah

    2015-10-01

    Full Text Available Penelitian ini bertujuan untuk: (1 menghasilkan model pembelajaran fisika berbasis Malcom’s Modeling Method yang layak digunakan di sekolah, dan (2 mengetahui apakah model pembelajaran fisika berbasis Malcom’s Modeling Method dapat meningkatkan keterampilan berpikir kritis dan motivasi belajar siswa. Penelitian ini termasuk dalam ranah penelitian dan pengembangan (R&D. Prosedur pengembangan mengadaptasi dari prosedur pengembangan yang dikembangkan oleh Borg & Gall dengan langkah-langkah meliputi (1 penelitian dan pengumpulan data, (2 perencanaan, (3 pengembangan bentuk awal produk, (4 uji coba lapangan awal, (5 revisi hasil uji coba lapangan awal, (6 uji coba lapangan, (7 revisi hasil uji coba lapangan dan (8 diseminasi. Subjek uji coba lapangan awal terdiri atas 36 siswa kelas X MIA 6 di SMA N 7 Yogyakarta. Subjek uji coba lapangan pada kelas ekperimen terdiri atas 36 orang siswa kelas X MIA 1 dan pada kelas kontrol terdiri atas 34 orang siswa kelas X MIA 5 di SMA N 7 Yogyakarta. Instrumen pengumpulan data menggunakan soal untuk mengukur keterampilan berpikir kritis, angket untuk mengukur motivasi belajar, angket respon siswa dan lembar observasi keterlaksanaan pembelajaran. Teknik analisis data menggunakan uji MANOVA dengan taraf signifikansi 5%. Hasil penelitian menunjukkan bahwa model Malcom’s Modeling Method ditinjau dari sintaks, sistem sosial, prinsip reaksi, sistem pendukung dan dampak instruksional dan pengiring layak digunakan di sekolah dengan kategori sangat baik. Hasil uji MANOVA menunjukkan model Malcom’s Modeling Method dapat meningkatkan keterampilan berpikir kritis dan motivasi belajar siswa pada taraf signifikansi 5 %. Kata Kunci: Malcom’s Modeling Method, keterampilan berpikir kritis, motivasi belajar.   DEVELOPING A PHYSICS INSTRUCTION MODEL BASED ON MALCOLM’S MODELING TO IMPROVE CRITICAL THINKING SKILLS AND LEARNING MOTIVATION Abstract This research aims to (1 develop a physics instruction model based on

  5. Feasibility and accuracy evaluation of three human papillomavirus assays for FTA card-based sampling: a pilot study in cervical cancer screening

    International Nuclear Information System (INIS)

    Wang, Shao-Ming; Hu, Shang-Ying; Chen, Wen; Chen, Feng; Zhao, Fang-Hui; He, Wei; Ma, Xin-Ming; Zhang, Yu-Qing; Wang, Jian; Sivasubramaniam, Priya; Qiao, You-Lin

    2015-01-01

    Liquid-state specimen carriers are inadequate for sample transportation in large-scale screening projects in low-resource settings, which necessitates the exploration of novel non-hazardous solid-state alternatives. Studies investigating the feasibility and accuracy of a solid-state human papillomavirus (HPV) sampling medium in combination with different down-stream HPV DNA assays for cervical cancer screening are needed. We collected two cervical specimens from 396 women, aged 25–65 years, who were enrolled in a cervical cancer screening trial. One sample was stored using DCM preservative solution and the other was applied to a Whatman Indicating FTA Elute® card (FTA card). All specimens were processed using three HPV testing methods, including Hybrid capture 2 (HC2), careHPV™, and Cobas®4800 tests. All the women underwent a rigorous colposcopic evaluation that included using a microbiopsy protocol. Compared to the liquid-based carrier, the FTA card demonstrated comparable sensitivity for detecting high grade Cervical Intraepithelial Neoplasia (CIN) using HC2 (91.7 %), careHPV™ (83.3 %), and Cobas®4800 (91.7 %) tests. Moreover, the FTA card showed a higher specificity compared to a liquid-based carrier for HC2 (79.5 % vs. 71.6 %, P = 0.015), comparable specificity for careHPV™ (78.1 % vs. 73.0 %, P > 0.05), but lower specificity for the Cobas®4800 test (62.4 % vs. 69.9 %, P = 0.032). Generally, the FTA card-based sampling medium’s accuracy was comparable with that of liquid-based medium for the three HPV testing assays. FTA cards are a promising sample carrier for cervical cancer screening. With further optimization, it can be utilized for HPV testing in areas of varying economic development

  6. PERANGKAT LUNAK UNTUK EKTRAKSI ISI DOKUMEN MULTIFORMAT DENGAN MENGGUNAKAN SMS DAN FAXIMILE

    Directory of Open Access Journals (Sweden)

    Ahmad Hoirul Basori

    2005-01-01

    Full Text Available Normal 0 false false false IN X-NONE X-NONE MicrosoftInternetExplorer4 Dokumen multiformat merupakan salah satu bentuk file yang disimpan dalam komputer  dan  banyak digunakan oleh  masyarakat saat ini.Setiap dokumen mempunyai karakteristik berbeda  dan memerlukan software yang berbeda untuk setiap file dokumen. Sedangkan perkembangan handphone yang semakin pesat membuat masyarakat lebih familiar menggunakan handphone daripada menggunakan komputer.proses pengambilan dokumen dapat terhambat jika user yang memerlukan dokumen multiformat tidak mempunyai keahlian komputer. Pada pengerjaan penelitian ini, teknologi yang digunakan untuk pengambilan dokumen multiformat adalah teknologi SMS dan mesin Faximile.sedangkan untuk pemodelan sistemnya teknologi yang digunakan adalah Unified Modelling Language dengan Rational Rose Enterprise 2000, serta  database Microsoft Access untuk penyimpanan data SMS. Untuk membangun aplikasi teknologi yang digunakan adalah Microsoft Visual Basic 6.0. Hal ini disebabkan dokumen multiformat pada penelitian ini kebanyakan merupakan produksi Microsoft sehingga antara teknologi yang digunakan dan dokumen multiformat saling mempunyai kesesuaian.   Uji coba dilakukan dengan cara melakukan pengiriman dokumen multiformat melalui SMS dan mengeluarkan outputnya ke dalam mesin faximile. Uji coba ini mencakup proses pembacaan data SMS, penyimpanan data SMS ke dalam database, pengiriman dokumen ke mesin fax, download page online, serta penambahan hak akses user melalui SMS. Hasil uji coba menunjukkan adanya permasalahan pada pengiriman dokumen multiformat yang berada dalam keadaan terproteksi. Permasalahan ini dapat diselesaikan dengan menghilangkan password yang ada pada dokumen multiformat.   Kata Kunci: SMS (Short Message Service, Ektraksi Dokumen, Mesin Fax.

  7. First Zika-positive donations in the continental United States.

    Science.gov (United States)

    Galel, Susan A; Williamson, Phillip C; Busch, Michael P; Stanek, Danielle; Bakkour, Sonia; Stone, Mars; Lu, Kai; Jones, Scott; Rossmann, Susan N; Pate, Lisa Lee

    2017-03-01

    Zika virus (ZIKV) has spread in the Americas, including parts of the southern United States, and infection can be associated with serious complications, including congenital brain abnormalities. Probable transfusion transmission of ZIKV has been documented in Brazil. Preemptive testing of blood donations for ZIKV RNA was implemented in southern US states at risk of local transmission using a test approved under a Food and Drug Administration (FDA) investigational new drug application, cobas Zika. Screening was expanded after issuance of an updated FDA guidance. Donations reactive on initial screening were further tested by nucleic acid and antibody tests to determine the donor status. Of 358,786 donations from US states screened by individual donation testing, 23 were initially reactive on cobas Zika. Fourteen of these represented probable ZIKV infection based on reactivity on additional nucleic acid testing or anti-Zika immunoglobulin M. Ten of the 14 donors reported travel to an identified ZIKV-active area within 90 days before donation (median time from end of travel to donation, 25 days; range, 6-71 days). Three donors with travel history also had a potential sexual exposure. Only seven of the 14 donations with probable ZIKV infection were detectable upon 1:6 dilution to simulate minipool testing. The estimated specificity of the cobas Zika test was 99.997%. Screening of donations for ZIKV RNA can interdict ZIKV-infected donors. Donor risk factors include travel more than 4 weeks before donation and sexual exposure. Minipool screening would have detected only 50% of the RNA-positive donations. © 2017 The Authors Transfusion published by Wiley Periodicals, Inc. on behalf of AABB.

  8. Performance of the new automated Abbott RealTime MTB assay for rapid detection of Mycobacterium tuberculosis complex in respiratory specimens.

    Science.gov (United States)

    Chen, J H K; She, K K K; Kwong, T-C; Wong, O-Y; Siu, G K H; Leung, C-C; Chang, K-C; Tam, C-M; Ho, P-L; Cheng, V C C; Yuen, K-Y; Yam, W-C

    2015-09-01

    The automated high-throughput Abbott RealTime MTB real-time PCR assay has been recently launched for Mycobacterium tuberculosis complex (MTBC) clinical diagnosis. This study would like to evaluate its performance. We first compared its diagnostic performance with the Roche Cobas TaqMan MTB assay on 214 clinical respiratory specimens. Prospective analysis of a total 520 specimens was then performed to further evaluate the Abbott assay. The Abbott assay showed a lower limit of detection at 22.5 AFB/ml, which was more sensitive than the Cobas assay (167.5 AFB/ml). The two assays demonstrated a significant difference in diagnostic performance (McNemar's test; P = 0.0034), in which the Abbott assay presented significantly higher area under curve (AUC) than the Cobas assay (1.000 vs 0.880; P = 0.0002). The Abbott assay demonstrated extremely low PCR inhibition on clinical respiratory specimens. The automated Abbott assay required only very short manual handling time (0.5 h), which could help to improve the laboratory management. In the prospective analysis, the overall estimates for sensitivity and specificity of the Abbott assay were both 100 % among smear-positive specimens, whereas the smear-negative specimens were 96.7 and 96.1 %, respectively. No cross-reactivity with non-tuberculosis mycobacterial species was observed. The superiority in sensitivity of the Abbott assay for detecting MTBC in smear-negative specimens could further minimize the risk in MTBC false-negative detection. The new Abbott RealTime MTB assay has good diagnostic performance which can be a useful diagnostic tool for rapid MTBC detection in clinical laboratories.

  9. Evaluation of the Correlation Coefficient of Polyethylene Glycol Treated and Direct Prolactin Results and Comparability with Different Assay System Results.

    Science.gov (United States)

    Pal, Shyamali

    2017-12-01

    The presence of Macro prolactin is a significant cause of elevated prolactin resulting in misdiagnosis in all automated systems. Poly ethylene glycol (PEG) pretreatment is the preventive process but such process includes the probability of loss of a fraction of bioactive prolactin. Surprisingly, PEG treated EQAS & IQAS samples in Cobas e 411 are found out to be correlating with direct results of at least 3 immunoassay systems and treated and untreated Cobas e 411 results are comparable by a correlation coefficient. Comparison of EQAS, IQAS and patient samples were done to find out the trueness of such correlation factor. Study with patient's results have established the correlation coefficient is valid for very small concentration of prolactin also. EQAS, IQAS and 150 patient samples were treated with PEG and prolactin results of treated and untreated samples obtained from Roche Cobas e 411. 25 patient's results (treated) were compared with direct results in Advia Centaur, Architect I & Access2 systems. Correlation coefficient was obtained from trend line of the treated and untreated results. Two tailed p-value obtained from regression coefficient(r) and sample size. The correlation coefficient is in the range (0.761-0.771). Reverse correlation range is (1.289-1.301). r value of two sets of calculated results were 0.995. Two tailed p- value is zero approving dismissal of null hypothesis. The z-score of EQAS does not always assure authenticity of resultsPEG precipitation is correlated by the factor 0.761 even in very small concentrationsAbbreviationsGFCgel filtration chromatographyPEGpolyethylene glycolEQASexternal quality assurance systemM-PRLmacro prolactinPRLprolactinECLIAelectro-chemiluminescence immunoassayCLIAclinical laboratory improvement amendmentsIQASinternal quality assurance systemrregression coefficient.

  10. Feasibility and accuracy evaluation of three human papillomavirus assays for FTA card-based sampling: a pilot study in cervical cancer screening.

    Science.gov (United States)

    Wang, Shao-Ming; Hu, Shang-Ying; Chen, Wen; Chen, Feng; Zhao, Fang-Hui; He, Wei; Ma, Xin-Ming; Zhang, Yu-Qing; Wang, Jian; Sivasubramaniam, Priya; Qiao, You-Lin

    2015-11-04

    Liquid-state specimen carriers are inadequate for sample transportation in large-scale screening projects in low-resource settings, which necessitates the exploration of novel non-hazardous solid-state alternatives. Studies investigating the feasibility and accuracy of a solid-state human papillomavirus (HPV) sampling medium in combination with different down-stream HPV DNA assays for cervical cancer screening are needed. We collected two cervical specimens from 396 women, aged 25-65 years, who were enrolled in a cervical cancer screening trial. One sample was stored using DCM preservative solution and the other was applied to a Whatman Indicating FTA Elute® card (FTA card). All specimens were processed using three HPV testing methods, including Hybrid capture 2 (HC2), careHPV™, and Cobas®4800 tests. All the women underwent a rigorous colposcopic evaluation that included using a microbiopsy protocol. Compared to the liquid-based carrier, the FTA card demonstrated comparable sensitivity for detecting high grade Cervical Intraepithelial Neoplasia (CIN) using HC2 (91.7 %), careHPV™ (83.3 %), and Cobas®4800 (91.7 %) tests. Moreover, the FTA card showed a higher specificity compared to a liquid-based carrier for HC2 (79.5 % vs. 71.6 %, P = 0.015), comparable specificity for careHPV™ (78.1 % vs. 73.0 %, P > 0.05), but lower specificity for the Cobas®4800 test (62.4 % vs. 69.9 %, P = 0.032). Generally, the FTA card-based sampling medium's accuracy was comparable with that of liquid-based medium for the three HPV testing assays. FTA cards are a promising sample carrier for cervical cancer screening. With further optimization, it can be utilized for HPV testing in areas of varying economic development.

  11. PENGEMBANGAN MULTIMEDIAPEMBELAJARAN BAHASA JERMAN PELAJARAN PELAYANAN RESTORAN DI YOTABAKTI YOGYAKARTA

    Directory of Open Access Journals (Sweden)

    Melly Handayani

    2015-10-01

    Full Text Available Tujuan penelitian dan pengembangan ini adalah (1 mengembangkan multimedia yang berisi materi dan latihan untuk keterampilan berbicara bahasa Jerman, (2 mendeskripsikan proses pengem-bangannya, dan (3 mendeskripsikan hasil evaluasi dan hasil uji coba lapangan. Uji coba terbatas dilakukan pada satu orang pengajar dan empat orang peserta didik. Uji coba lapangan melibatkan 2 orang pengajar dan 10 orang peserta didik. Data dianalisis secara deskriptif kuantitatif. Langkah pengembangan multimedia pembelajaran bahasa Jerman yang digunakan adalah (1 analisis kebutuhan, (2 perencanaan, (3 pengembangan produk, (4 evaluasi produk, (5 revisi produk, (6 uji coba lapangan, dan (7 produk akhir. Kualitas multimedia pembelajaran bahasa Jerman menurut dosen ahli materi adalah sangat baik dan menurut ahli media adalah baik. Kualitas multimedia menurut dua orang pengajar bahasa Jerman adalah sangat baik dan menurut peserta didik adalah baik. Dari 10 orang peserta didik, 80% mencapai nilai KKM. 100% respon peserta didik terhadap multimedia yang dikembangkan adalah sangat baik. Kata Kunci: Pengembangan, multimedia, keterampilan berbicara, pelayanan restoran   DEVELOPING MULTIMEDIA FOR GERMAN LANGUAGE TEACHING MATERIAL FOR RESTAURANT SERVICE LESSONS IN YOTABAKTI YOGYAKARTA Abstract The objectives of this research and development are (1 to develop a learning media for German language teachers, a computer assisted media with learning materials and exercises for speaking skill, (2 to describe the process of developing Multimedia German Language Teaching Material for Restaurant Service Lessons, and ( 3 to describe the result of product evaluation and field try out. The small group tryout involved five participants, a German language teacher and four students of Yotabakti. Field try out involved two German language teachers and ten students. The data of this study were analysed descriptively and quantitatively. The procedures of developing multimedia German language

  12. Optimasi Jangkauan Jaringan 4G Menggunakan Algoritma Genetika

    Directory of Open Access Journals (Sweden)

    Garsinia Ely Riani

    2016-12-01

    Full Text Available Kemampuan dan jangkauan 4G yang lebih luas daripada teknologi generasi sebelumnya perlu dimaksimalkan. Hal ini mengingat antusiasme pengguna layanan selular dalam menyambut kehadiran teknologi internet cepat ini. Optimasi yang dilakukan memperhatikan luas area, kerapatan pengguna internet dan posisi Base Transceiver Station (BTS. Penelitian ini mengusulkan algoritma genetika sebagai algoritma optimasi yang sering digunakan untuk menyelesaikan berbagai permasalahan kompleks. Optimasi dilakukan untuk memaksimalkan jangkauan 4G  secara efektif dan efisien dari sisi penyedia (provider. Serangkaian uji coba menunjukkan bahwa algoritma genetika mampu memberikan solusi yang cukup baik untuk penentuan posisi BTS dalam permasalahan jangkauan pelanggan.

  13. PENGEMBANGAN MEDIA PAPAN PERMAINAN PANJAT PINANG

    Directory of Open Access Journals (Sweden)

    Desty Triastuti

    2017-10-01

    Full Text Available Media is a very important component in the learning process. Media can be used as a toll for learning, that can be easy for the teachers to learn of the material, and at the same time can be facilitate the students to accepting and understanding of the material.  The purpose of this study is to produce the product that are specialized media to help the process of thematic learning. This media serves as a tool for stimulate memory recall and reinforce the material in students of fifth grade in elementary school. The media called board games panjat pinang has been validated on the the content and design, next then tried out on one to one evaluation, 6 students on small group evaluation and 23 students on field trial. The results of the tryouts indicating the level of feasibility of teaching materials is very high. The average validity is 90,025, attractiveness 91,80, effectiveness of 92,75, and practicality 92,18, so that media announced eligible and effective for use in thematic learning especially for matter circulatory systems human and animal. Media memiliki peranan yang sangat penting dalam proses pembelajaran. Media dapat dijadikan sebagai alat bantu belajar yang dapat memudahkan guru dalam penyampain materi sekaligus memudahkan siswa dalam menerima dan memahami materi.  Tujuan penelitian ini adalah menghasilkan produk media papan permainan panjat pinang untuk pembelajaran tematik. Media ini berfungsi sebagai alat bantu menstimulasi daya ingat dan penguatan materi bagi siswa kelas V SD. Media divalidasi pada aspek isi dan desain, diujicobakan kepada satu orang siswa pada uji coba perorangan, enam siswa pada uji coba kelompok kecil dan 23 siswa pada uji coba lapangan. Hasil uji coba menunjukkan tingkat kevalidan sangat tinggi. Rata-rata kevalidan 87,7, kepraktisan 90,55, kemenarikan 92,22, dan keefektifan 91,0. Berdasarkan skor perolehan tersebur, media dinyatakan layak dan efektif untuk digunakan di dalam pembelajaran tematik,

  14. Evaluation, including effects of storage and repeated freezing and thawing, of a method for measurement of urinary creatinine

    DEFF Research Database (Denmark)

    Garde, A H; Hansen, Åse Marie; Kristiansen, J

    2003-01-01

    The aims of this study were to elucidate to what extent storage and repeated freezing and thawing influenced the concentration of creatinine in urine samples and to evaluate the method for determination of creatinine in urine. The creatinine method was based on the well-known Jaffe's reaction...... and measured on a COBAS Mira autoanalyser from Roche. The main findings were that samples for analysis of creatinine should be kept at a temperature of -20 degrees C or lower and frozen and thawed only once. The limit of detection, determined as 3 x SD of 20 determinations of a sample at a low concentration (6...

  15. Comparison of two automated assays of BTM (CTX and P1NP) and reference intervals in a Danish population

    DEFF Research Database (Denmark)

    Jørgensen, N R; Møllehave, L T; Hansen, Y B L

    2017-01-01

    the agreement on the two platforms. METHODS: Fasting sera from 2308 individuals (1250 males and 1058 females, age range 24-76 years) participating in the Health2006 study were analyzed for CTX and P1NP using the automated IDS-iSYS analyzer and the automated Cobas e411 analyzer. Participants in anti......-osteoporotic treatment were excluded, while subjects on hormonal contraceptives were included. RESULTS: There was significant disagreement between both the two P1NP assays with a mean difference of -3 μg/L (LoA -19 to 14) (p

  16. KOMPETENSI GURU PAUD DALAM MEMBUAT ALAT BERMAIN SAINS DARI LIMBAH

    Directory of Open Access Journals (Sweden)

    Dwi Yulianti

    2013-02-01

    Full Text Available Kegiatan pengabdian masyarakat ini bertujuan meningkatkan kompetensi guru PAUD dalam alat bermain sains (ABS dari barang-barang habis pakai atau limbah. Metode yang diterapkan berupa pelatihan dan workshop yang meliputi kuliah, praktek membuat alat dan peer teaching. ABS yang berhasil dibuat diantaranya tikar warna, pengukuran, menimbang, menakar, magnet, bunyi, pncampuran warna, gravitasi, telepon dari gelas plastik. Setelah kegiatan berlangsung terjadi peningkatan jumlah alat pada masing-masing sekolah. Terjadi pula peningkatan kompetensi guru dalam membuat alat bermain sains. Dari hasil uji coba melalui kegiatan per teaching, hasil belajar kognitif, afektif dan psikomotorik siswa meningkat secara signifikan.

  17. 25-hydroxy-Vitamin D status: limitations in comparison and clinical interpretation of serum-levels across different assay methods.

    Science.gov (United States)

    Enko, Dietmar; Fridrich, Leo; Rezanka, Erwin; Stolba, Robert; Ernst, Juliane; Wendler, Iris; Fabian, Daniel; Hauptlorenz, Susanne; Halwachs-Baumann, Gabriele

    2014-01-01

    Background: Over the last decade, clinical interest to evaluate human 25-hydroxy-vitamin D (25[OH]D) serum levels has increased exponentially. In the present study, four chemiluminescence immunoassays (CLIA), one radioimmunoassy (RIA), and one high performance liquid chromatography (HPLC) method were compared and also with the liquid chromatography-tandem mass spectrometry (LC-MS/MS) method in view of 25(OH)D serum level determination. Methods: For the method comparison, blood samples from 133 consecutive patients were prospectively collected. All participants gave written informed consent for their blood samples to be used in this study. They came to the Department of Nuclear Medicine of the Central Hospital Steyr (Austria) for osteodensidometric measurement as part of their preventive medical check-up. Pearson's correlation coefficients, Bland-Altman plots, and paired t-tests were calculated. Assay-specific reference ranges were considered using blood samples from persons with normal parathormone, calcium, and total-protein values (n = 97). Results: The highest correlation was between the HPLC and the LC-MS/MS method (r = 0.96). The lowest correlation was between the cobas Vitamin D3 assay (Roche) and any of the evaluated assays (r = 0.46 - 0.63). Bland-Altman plots revealed a big negative mean bias in three assays (cobas Vitamin D3 assay [Roche]: -22.8; DiaSorin LIAISON [25[OH]D total CLIA [Diasorin]: -18.4; Diasorin 25[OH]D125 I RIA [Diasorin]: -23.8 [nmol/L]) and a much smaller positive mean bias in the other assays (ClinRep complete 25[OH]D2/D3 HPLC kit [Recipe]: 2.7; ADVIA Centaur Vitamin D total assay [Siemens]: 8.2; IDS total vitamin D assay [Immunodiagnostic Systems]: 12.1 [nmol/L]) compared to the LC-MS/MS method. Meanwhile, the manufacturer has withdrawn the cobas Vitamin D3 assay from the market. Conclusions: Poor antibody specificity with cross-reactivity to other vitamin D metabolites, incomplete extraction of the 25(OH)D analyte from the vitamin D

  18. PENGEMBANGAN BUKU AJAR BIOTEKNOLOGI BERBASIS PENELITIAN BIOREMIDIASI LOGAM BERAT KADMIUM UNTUK MAHASISWA S1 BIOLOGI UNIVERSITAS NEGERI MALANG

    Directory of Open Access Journals (Sweden)

    Agung Pambudiono

    2016-06-01

    Tujuan penelitian ini adalah menghasilkan buku ajar berbasis penelitian tentang bioremidiasi logam berat. Penelitian ini mengadaptasi model pengembangan Dick & Carey. Kelayakan buku ajar didasarkan pada hasil uji coba produk oleh tim ahli dan kelompok kecil. Jenis data yang dikumpulkan adalah data kuantitatif dan data kualitatif. Data yang telah terkumpul dianalisis secara deskriptif kuantitatif dan kualitatif. Hasil validasi yang dilakukan oleh ahli materi memberikan nilai persentase kevalidan buku ajar sebesar 91.6%, penilaian dari ahli media sebesar 90.81%. sedangkan penilaian kelompok kecil sebesar 85.56%. Berdasarkan hasil validasi maka buku ajar yang dikembangkan dikategorikan sangat valid dan layak untuk dipergunakan.

  19. Aprendizaje cooperativo. Un recurso indispensable en la formación universitaria

    OpenAIRE

    Cobas Cobiella, María Elena; Montes Rodríguez, María Pilar; Alventosa del Río, Josefina; Guillén Catalán, Raquel; Ortega Giménez, Alfonso; Marí Farinós, Jesús; Muñoz Pérez, David; Martínez Evora, Joan; Panadero de la Cruz, Catalina Edeltrudis; Vega Cardona, Raúl José; Company Alcañiz, Mireia; Rivera Rodón, Gretchen; Ordelín Font, Jorge Luis; Febles Pozo, Nayiber; García Juncos, María Antonia

    2016-01-01

    El Libro “Aprendizaje cooperativo Un recurso indispensable en la formación universitaria”, se enmarca dentro del Proyecto de Innovación docente Finestra Oberta UV_ SFPIE GER 15-314671, bajo la dirección de la Profesora María Elena Cobas Cobiella, del Departamento de Derecho Civil, de la Facultad de Derecho de la Universidad de Valencia. Este libro contiene 19 artículos inéditos de un grupo importante de profesores y especialistas en la temática nacionales e internacionales, así como c...

  20. Pengembangan E-Modul Berbasis Adobe Flash CS6 pada Mata Pelajaran Penataan Barang Dagang

    Directory of Open Access Journals (Sweden)

    Indah Zahrotul Fauziah

    2016-09-01

    Full Text Available Abstract: The increasing of technology development gives several new things. They are both the technology development in the general aspect and in education aspect. Those developments demand the educators to develop the innovative learning. One of them is using an interactive multimedia in the form of e-module or electronic module which uses Adobe Flash CS6 application. This research uses Research and Development (R&D method with which the combination between ADDIE procedure and Borg & Gall. It consists of 5 stages: (1 Analysis (Needs Analysis, (2 Design (Media of Learning, (3 Development (Media and Materials Validation, (4 Implementation (Small-scale and Field Try-Out, and Evaluation (Three times of revision. The e-module was validated by two experts for three times containing the early product, after small-scale try-out, and after field try-out. The results of the final validation are 99.31% for media expert validation, 98.61% for materials expert validation, and 90.03% for student validation. Abstrak: Perkembangan teknologi yang sangat pesat menghasilkan hal-hal baru, baik teknologi secara umum maupun perkembangan teknologi dalam dunia pendidikan. Perkembangan teknologi tersebut menuntut pendidik untuk mengembangkan pembelajaran yang inovatif. Salah satunya menggunakan multimedia interaktif yang dikemas dalam bentuk e-modul atau modul elektronik dengan memanfaatkan aplikasi Adobe Flash CS6. Penelitian ini menggunakan metode penelitian dan pengembangan (R&D dengan Prosedur penelitian dan pengembangan (R&D ADDIE yang digabungkan dengan Borg & Gall, meliputi 5 tahap yaitu: (1 Analisis (analisis kebutuhan, (2 Design (media pembelajaran, (3 Development (validasi media dan materi, (4 Implementasi (uji coba terbatas dan uji coba lapangan dan (5 Evaluasi (revisi tiga kali. E-modul ini divalidasi oleh dua validator sebanyak tiga kali, yaitu produk awal, setelah uji coba terbatas, dan setelah uji coba lapangan. Berikut adalah hasil yang diperoleh pada

  1. Prévalence des dyslipidémies au laboratoire de biochimie du CHU ...

    African Journals Online (AJOL)

    Le cholestérol total, le cholestérol HDL, le cholestérol LDL ainsi que les triglycérides ont été dosés grâce à des méthodes enzymatiques sur un automate de Biochimie de type Cobas Integra 400 (Roche Diagnostics). Résultats: la prévalence des dyslipidémies dans notre population d'étude est de 39,30%. Les prévalences ...

  2. PENGEMBANGAN BUKU AJAR BERBASIS PENELITIAN EVOLUSI DAN FILOGENETIK MOLEKULER UNTUK MATAKULIAH EVOLUSI DI UNIVERSITAS JEMBER

    Directory of Open Access Journals (Sweden)

    Ulin Nuha

    2016-09-01

    Filogenetik molekuler merupakan salah satu kajian yang dipelajari pada matakuliah Evolusi untuk jenjang S1 Pendidikan Biologi. Kajian ini memerlukan bahan ajar yang kontekstual dan tetap mengikuti perkembangan IPTEKS. Kendala yang muncul adalah pengetahuan mahasiswa dalam ranah molekuler masih rendah. Salah satu solusi yang dapat dilakukan adalah dengan menyediakan buku ajar berbasis penelitian denan pendekatan molekuler. Buku ajar dikembangkan berdasarkan model pengembangan ADDIE. Produk divalidasi oleh ahli media, materi, praktisi pendidikan dan diujicobakan pada kelompok kecil. Hasil validasi ahli media, ahli materi, praktisi pendidikan, dan uji coba kelompok kecil secara berturut turut adalah 87,14%, 91,00%, 75,78%, dan 82,22%.

  3. Comparison of two immunoassay systems for hCGβ and PAPP-A in prenatal screening for trisomy 21, 18, and 13 in the first trimester

    DEFF Research Database (Denmark)

    Engell, Anna Elise; Carlsson, Elin Rebecka; Jørgensen, Finn Stener

    2017-01-01

    OBJECTIVES: The biochemical serum markers free β-human chorionic gonadotropin (hCGβ) and pregnancy associated plasma protein A (PAPP-A), used in screening for trisomy 21 (T21), trisomy 18 (T18), and trisomy 13 (T13) during the first trimester, can be measured on different laboratory instruments e.......g. Kryptor (Brahms) and Cobas (Roche). We compared the performance of these two analytical instruments when used for first trimester combined testing. DESIGN AND METHODS: Serum samples from 944 singleton pregnant women attending for first trimester combined testing were routinely assayed for hCGβ and PAPP...

  4. Effekten af sund skolekost på udvalgte blodparametre

    DEFF Research Database (Denmark)

    Horn, Peer Bendix; Brandslund, Ivan; Schmedes, Anne

    2009-01-01

    blood before (week 39) and after the intervention (week 49). The intervention group received a healthy meal for two months (25-30% of the daily intake of calories). Blood samples were analyzed for 17 parameters related to carbohydrate, fat and protein metabolism as well as vitamins and minerals. RESULTS......: During the intervention period, the intervention group showed a significant change in mean values for thyroid-stimulating hormone (TSH), calcium (CA) haemoglobin (HB), cobalamin (COBA) and creatinine (CREA) compared with the control group (p

  5. Analytic performance studies and clinical reproducibility of a real-time PCR assay for the detection of epidermal growth factor receptor gene mutations in formalin-fixed paraffin-embedded tissue specimens of non-small cell lung cancer

    International Nuclear Information System (INIS)

    O’Donnell, Patrick; Shieh, Felice; Wei, Wen; Lawrence, H Jeffrey; Wu, Lin; Schilling, Robert; Bloom, Kenneth; Maltzman, Warren; Anderson, Steven; Soviero, Stephen; Ferguson, Jane; Shyu, Johnny; Current, Robert; Rehage, Taraneh; Tsai, Julie; Christensen, Mari; Tran, Ha Bich; Chien, Sean Shih-Chang

    2013-01-01

    Epidermal growth factor receptor (EGFR) gene mutations identify patients with non-small cell lung cancer (NSCLC) who have a high likelihood of benefiting from treatment with anti-EGFR tyrosine kinase inhibitors. Sanger sequencing is widely used for mutation detection but can be technically challenging, resulting in longer turn-around-time, with limited sensitivity for low levels of mutations. This manuscript details the technical performance verification studies and external clinical reproducibility studies of the cobas EGFR Mutation Test, a rapid multiplex real-time PCR assay designed to detect 41 mutations in exons 18, 19, 20 and 21. The assay’s limit of detection was determined using 25 formalin-fixed paraffin-embedded tissue (FFPET)-derived and plasmid DNA blends. Assay performance for a panel of 201 specimens was compared against Sanger sequencing with resolution of discordant specimens by quantitative massively parallel pyrosequencing (MPP). Internal and external reproducibility was assessed using specimens tested in duplicate by different operators, using different reagent lots, instruments and at different sites. The effects on the performance of the cobas EGFR test of endogenous substances and nine therapeutic drugs were evaluated in ten FFPET specimens. Other tests included an evaluation of the effects of necrosis, micro-organisms and homologous DNA sequences on assay performance, and the inclusivity of the assay for less frequent mutations. A >95% hit rate was obtained in blends with >5% mutant alleles, as determined by MPP analysis, at a total DNA input of 150 ng. The overall percent agreement between Sanger sequencing and the cobas test was 96.7% (negative percent agreement 97.5%; positive percent agreement 95.8%). Assay repeatability was 98% when tested with two operators, instruments, and reagent lots. In the external reproducibility study, the agreement was > 99% across all sites, all operators and all reagent lots for 11/12 tumors tested. Test

  6. MODEL PEMBELAJARAN NEUROLINGUISTIC PROGRAMMING BERORIENTASI KARAKTER BAGI PENINGKATAN KEMAMPUAN MENULIS SISWA SMP

    Directory of Open Access Journals (Sweden)

    Wikanengsih -

    2014-06-01

    Abstrak: Model Pembelajaran Neurolinguistic Programming Berorientasi Karakter untuk Mening­katkan Kemampuan Menulis Siswa. Penelitian ini bertujuan untuk mengetahui keefektifan model pem­belajaran neurolinguistik programming berorientasi karakter (MPNLPBK terhadap kemampuan menulis siswa. Metode penelitian yang digunakan metode penelitian kombinasi (mixed method jenis sequential exploratory strategy. Hasil penelitian tahap pertama (penelitian kualitatif menghasilkan model pembelajaran hipotetik. Penelitian tahap kedua merupakan uji coba penerapan model hipotetik (penelitian kuantitatif. Hasil pengujian menunjukkan bahwa pembelajaran menulis dengan menggunakan MPNLPBK dapat meningkatkan kemampuan menulis siswa kelompok eksperimen. Selain itu, berdasarkan hasil pengamatan terhadap aspek karakter komunikatif, toleran, tanggungjawab dan kreatif siswa, terdapat perkembangan pada diri siswa untuk setiap aspek tersebut.

  7. Multicenter evaluation of a commercial multiplex polymerase chain reaction test for screening plasma donations for parvovirus B19 DNA and hepatitis A virus RNA.

    Science.gov (United States)

    Koppelman, Marco H G M; Cuijpers, H Theo M; Wessberg, Susanna; Valkeajärvi, Anne; Pichl, Lutz; Schottstedt, Volkmar; Saldanha, John

    2012-07-01

    Three European laboratories evaluated the TaqScreen DPX test (DPX test), a multiplex nucleic acid test assay for the simultaneous detection and quantitation of parvovirus B19 (B19V) DNA and the detection of hepatitis A virus (HAV) RNA. The 95% limit of detection of the test for B19V and HAV was determined using the respective WHO International Standards. The reproducibility of the test was evaluated by testing replicate samples of B19V at log 4.0 and 40 IU/mL and HAV at 5 IU/mL. The accuracy of the DPX test for B19V was evaluated by replicate testing of B19V samples containing log 3.0, log 4.0, and log 5.0 IU/mL. Panels of B19V Genotypes 1, 2, and 3 and HAV genotypes were evaluated. Cross-contamination was evaluated. For comparison of the DPX test and the established tests, the sites tested plasma samples in pools of either 96 or 480 donations. The mean 95% lower limits of detection of the three laboratories for B19V and HAV were 20.30 and 1.85 IU/mL. The test showed good reproducibility with the major part of the variance of the test being attributed to intermediate assay variation. The test showed great accuracy for B19V, especially at log 4.0 IU/mL. Spiking of test pools of 480 donations and manufacturing pools with log 4.0 IU/mL B19 DNA and 4 IU/mL HAV RNA showed that the DPX assay was robust. The test was able to detect the three genotypes of B19V and HAV genotypes. No cross-contamination was seen. Test results of routine samples correlated well with those of the established tests. The DPX test is a robust and sensitive test for the detection of B19V and HAV in plasma samples. The quantitative B19V results obtained with the test are accurate, and the test is able to detect all the known genotypes of B19V and HAV and fulfills all the European Pharmacopoeia and Food and Drug Administration requirements for a B19V and HAV test for screening of plasma donations and samples from plasma pools for manufacture. © 2012 American Association of Blood Banks.

  8. First light of Cassis: the stereo surface imaging system onboard the exomars TGO

    Science.gov (United States)

    Gambicorti, L.; Piazza, D.; Pommerol, A.; Roloff, V.; Gerber, M.; Ziethe, R.; El-Maarry, M. R.; Weigel, T.; Johnson, M.; Vernani, D.; Pelo, E.; Da Deppo, V.; Cremonese, G.; Ficai Veltroni, I.; Thomas, N.

    2017-09-01

    The Colour and Stereo Surface Imaging System (CaSSIS) camera was launched on 14 March 2016 onboard the ExoMars Trace Gas Orbiter (TGO) and it is currently in cruise to Mars. The CaSSIS high resolution optical system is based on a TMA telescope (Three Mirrors Anastigmatic configuration) with a 4th powered folding mirror compacting the CFRP (Carbon Fiber Reinforced Polymer) structure. The camera EPD (Entrance Pupil Diameter) is 135 mm and the focal length is 880 mm, giving an F# 6.5 system; the wavelength range covered by the instrument is 400-1100 nm. The optical system is designed to have distortion of less than 2%, and a worst case Modulation Transfer Function (MTF) of 0.3 at the detector Nyquist spatial frequency (i.e. 50 lp/mm). The Focal Plane Assembly (FPA), including the detector, is a spare from the Simbio-Sys instrument of the Italian Space Agency (ASI). Simbio-Sys will fly on ESA's BepiColombo mission to Mercury in 2018. The detector, developed by Raytheon Vision Systems, is a 2k×2k hybrid Si-PIN array with 10 μm-pixel pitch. The detector allows snap shot operation at a read-out rate of 5 Mpx/s with 14-bit resolution. CaSSIS will operate in a push-frame mode with a Filter Strip Assembly (FSA), placed directly above the detector sensitive area, selecting 4 colour bands. The scale at a slant angle of 4.6 m/px from the nominal orbit is foreseen to produce frames of 9.4 km × 6.3 km on the Martian surface, and covering a Field of View (FoV) of 1.33° cross track × 0.88° along track. The University of Bern was in charge of the full instrument integration as well as the characterisation of the focal plane of CaSSIS. The paper will present an overview of CaSSIS and the optical performance of the telescope and the FPA. The preliminary results of the on-ground calibration campaign and the first light obtained during the commissioning and pointing campaign (April 2016) will be described in detail. The instrument is acquiring images with an average Point Spread

  9. Pengembangan bahan Pembelajaran Berbantuan komputer (PBK untuk Memfasilitasi Active Learning dalam Mata Kuliah Landasan Kependidikan

    Directory of Open Access Journals (Sweden)

    Surtikanti Surtikanti

    2005-12-01

    Full Text Available Penelitian ini bertujuan untuk: (1 mengembangkan software PBK mata kuliah Landasan Kependidikan sebagai salah satu sumber media alternatif dalam rangka mencapai efektivitas, efisiensi dan daya tank untuk belajar; (2 menerapkan prinsip-prinsip desain pembelajaran (in­structional design dalam software pembelajaran Landasan Kependidikan; (3 Menentukan kelayakan produk pembelajaran landasan kependidikan berbantuan komputer agar dapat memfasilitasi active learning. Subjek penelitian terdiri dari 2 orang, (1 orang ahli mated dan 1 orang ahli media, 6 orang mahasiswa untuk uji coba kelompok kecil, dan 20 orang mahasiswa untuk uji coba lapangan. Data yang dijaring sesuai dengan jenisnya. Data kuantitatif dianalisis dengan statistik deskriptif sedangkan data kualitatif dengan naratif deskriptif. Hasil penelitian menunjukkan, bahwa: (1 Bahan PBK yang dirancang efektif digunakan untuk mencapai tujuan pembelajaran; (2 Bahan PBK memiliki efisiensi waktu yang tinggi dalam penyampaian isi pembelajaran; (3 Bahan PBK yang digunakan memiliki daya tarik yang tinggi; (4 isi program PBK sesuai dengan prinsip-prinsip desain pembelajaran; dan (5 program PBK ini dapat memfasilitasi strategi active learning. Kata kunci: pembelajaran berbantuan komputer, strategi active learning.

  10. Thermal annealing and pressure effects on BaFe2-xCoxAs2 single crystals.

    Science.gov (United States)

    Shin, Dongwon; Jung, Soon-Gil; Prathiba, G; Seo, Soonbeom; Choi, Ki-Young; Kim, Kee Hoon; Park, Tuson

    2017-11-26

    We investigate the pressure and thermal annealing effects on BaFe2-xCoxAs2 (Co-Ba122) single crystals with x = 0.1 and 0.17 via electrical transport measurements. The thermal annealing treatment not only enhances the superconducting transition temperature (Tc) from 9.6 to 12.7 K for x = 0.1 and from 18.1 to 21.0 K for x = 0.17, but also increases the antiferromagnetic transition temperature (TN). Simultaneous enhancement of Tc and TN by the thermal annealing treatment indicates that thermal annealing could substantially improve the quality of the Co-doped Ba122 samples. Interestingly, Tc of the Co-Ba122 compounds shows a scaling behavior with a linear dependence on the resistivity value at 290 K, irrespective of tuning parameters, such as chemical doping, pressure, and thermal annealing. These results not only provide an effective way to access the intrinsic properties of the BaFe2As2 system, but also may shed a light on designing new materials with higher superconducting transition temperature. © 2017 IOP Publishing Ltd.

  11. Evaluating new HbA1c methods for adoption by the IFCC and NGSP reference networks using international quality targets.

    Science.gov (United States)

    Lenters-Westra, Erna; English, Emma

    2017-08-28

    As a reference laboratory for HbA1c, it is essential to have accurate and precise HbA1c methods covering a range of measurement principles. We report an evaluation of the Abbott Enzymatic (Architect c4000), Roche Gen.3 HbA1c (Cobas c513) and Tosoh G11 using different quality targets. The effect of hemoglobin variants, other potential interferences and the performance in comparison to both the International Federation of Clinical Chemistry and Laboratory Medicine (IFCC) and the National Glycohemoglobin Standardization Program (NGSP) reference systems was assessed using certified evaluation protocols. Each of the evaluated HbA1c methods had CVs HbA1c. Partly based on the result of this study, the Abbott Enzymatic method on the Architect c4000 and the Roche Gen.3 HbA1c on the Cobas c513 are now official, certified IFCC and NGSP SRMPs in the IFCC and NGSP networks. Sigma metrics quality criteria presented in a graph distinguish between good and excellent performance.

  12. A Simple Phosphate-Buffered-Saline-Based Extraction Method Improves Specificity of HIV Viral Load Monitoring Using Dried Blood Spots.

    Science.gov (United States)

    Makadzange, A Tariro; Boyd, F Kathryn; Chimukangara, Benjamin; Masimirembwa, Collen; Katzenstein, David; Ndhlovu, Chiratidzo E

    2017-07-01

    Although Roche COBAS Ampliprep/COBAS TaqMan (CAP/CTM) systems are widely used in sub-Saharan Africa for early infant diagnosis of HIV from dried blood spots (DBS), viral load monitoring with this system is not practical due to nonspecific extraction of both cell-free and cell-associated viral nucleic acids. A simplified DBS extraction technique for cell-free virus elution using phosphate-buffered saline (PBS) may provide an alternative analyte for lower-cost quantitative HIV virus load (VL) testing to monitor antiretroviral therapy (ART). We evaluated the CAP/CTM v2.0 assay in 272 paired plasma and DBS specimens using the cell-free virus elution method and determined the level of agreement, sensitivity, and specificity at thresholds of target not detected (TND), target below the limit of quantification (BLQ) (1,000 copies/ml, the sensitivities, specificities, positive predictive values (PPV), and negative predictive values (NPV) were 92.7%, 100%, 100%, and 94.3%, respectively. PBS elution of DBS offers a sensitive and specific method for monitoring plasma viremia among adults and children on ART at the WHO-recommended threshold of >1,000 copies/ml on the Roche CAP/CTM system. Copyright © 2017 Makadzange et al.

  13. PENGEMBANGAN INSTRUMEN PENILAIAN KETERAMPILAN TEKNIK FOREHAND DAN BACKHAND DRIVE TENIS MEJA PADA ATLET USIA DINI

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    Verandita Rihtiana

    2014-09-01

    Full Text Available Penelitian ini bertujuan untuk mengembangkan instrumen penilaian keterampilan teknik forehand dan backhand drive tenis meja pada atlet usia dini. Penelitian ini menggunakan metode pene-litian dan pengembangan, dengan langkah-langkah pengembangan sebagai berikut: (1 pengumpulan informasi di lapangan, (2 melakukan analisis terhadap informasi yang dikumpulkan, (3 mengembangkan produk awal (draf model, (4 validasi ahli dan revisi, (5 uji coba skala kecil dan revisi, (6 uji coba skala besar dan revisi, (7 pembuatan produk final. Subjek penelitian atlet tenis meja usia dini. Analisis data untuk uji validitas dilakukan dengan CVR (content validity ratio dan reliabilitas dengan  menggunakan Alpha Crobanch. Penelitian ini menghasilkan buku panduan instrumen penilain keterampilan teknik forehand dan backhand drive tenis meja untuk atlet pemula  yang didalamnya berisi  petunjuk penggunaan, lembar tugas siswa, pedoman penilaian, rubrik penilaian, serta tabel penyekoran, yang memiliki validitas yang tinggi (1 dan reliabilitas yang tinggi¸forehand drive sikap awal: r = 0,975, pelaksanaan: r = 0,961, gerak lanjutan: r = 0, 955. Backhand drive sikap awal: r = 0,961, pelaksanaan r = 0,974, gerak lanjutan: r = 0, 989. Kata Kunci: instrumen penilaian teknik forehand dan backhand drive, tenis meja

  14. RANCANG BANGUN APLIKASI MONITORING DAN REKAM DATA SISTEM PENGENALAN SISTEM ISYARAT BAHASA INDONESIA BERBASIS SENSOR

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    Mohammad Iqbal

    2014-11-01

    Full Text Available ABSTRAK Dalam penelitian ini dikembangkan pengenalan sistem isyarat bahasa Indonesia (SIBI berbasis sensor yang diharapkan dapat memperbaiki akurasi, yaitu dengan menggunakan sensor flex untuk gerakan lekukan jari, dan menggunakan sensor accelerometer-gyroscope untuk mengetahui kemiringan/orientasi tangan. Untuk mendapatkan ekstraksi ciri dan metode pengenalan yang optimal, maka diperlukan uji coba dan analisis terhadap perbandingan ekstraksi ciri dan metode pengenalan, sehingga dapat ditentukan yang terbaik. Dalam uji coba dan analisis tersebut, maka diperlukan sampel data offline atau data yang sudah disimpan/direkam sebelumnya, sehingga diperlukan aplikasi untuk dapat merekam data (recording dan memonitoring data dari sensor-sensor yang dipasang pada sarung tangan. Dengan adanya data-data sensor tersebut, maka proses pemilihan ekstraksi ciri dan metode pengenalan yang optimal dapat dilakukan secara offline, menggunakan perangkat lunak komputasi. Capaian dapam Penelitian ini, adalah telah berhasil dikembangkan program aplikasi monitoring dan rekam data untuk sistem pengenalan SIBI. Data sensor yang dimonitoring dan direkam adalah data raw, sehingga perlu dilakukan pengolahan data untuk proses ekstraksi ciri sebelum diujicobakan pada metode pengenalan tertentu Kata kunci: SIBI, bahasa isyarat, sensor, flex, acclerometer, gyroscope, monitoring, recording.

  15. Nematic fluctuations and resonance in iron-based superconductors

    Science.gov (United States)

    Gallais, Yann

    The spontaneous appearance of nematicity, a state of matter that breaks rotation but not translation symmetry, is ubiquitous in many iron based superconductors (Fe SC), and has relevance for the cuprates as well. Here I will review recent electronic Raman scattering experiments which report the presence of critical nematic fluctuations in the charge channel in the tetragonal phase of several Fe SC systems. In electron doped Co-BaFe2As2 (Co-Ba122), these fluctuations extend over most of the superconducting dome. Their associated nematic susceptibility shows Curie-Weiss behavior, and its doping dependence suggests the presence of a nematic quantum critical point near optimal TC Similar nematic fluctuations are also observed in FeSe despite the absence of magnetic order, raising the question of the link between nematicity and magnetism in Fe SC. In FeSe I will further contrast the evolution of nematic fluctuations under isoelectronic S substitution and hydrostatic pressures up to 8 GPa, with only the former showing evidence for a nematic quantum critical point. In the superconducting state of Co-Ba122, I will show that a resonance emerges in the Raman spectra near the nematic quantum critical point. This nematic resonance is a clear fingerprint of the coupling between nematic fluctuations and Bogoliubov quasiparticles, and can be thought as the nematic counterpart of the spin resonance observed in neutron scattering experiments. Support from Agence Nationale de la Recherche via ANR Grant ''Pnictides'' is acknowledged.

  16. A novel duplex real-time reverse transcriptase-polymerase chain reaction assay for the detection of hepatitis C viral RNA with armored RNA as internal control

    Directory of Open Access Journals (Sweden)

    Meng Shuang

    2010-06-01

    Full Text Available Abstract Background The hepatitis C virus (HCV genome is extremely heterogeneous. Several HCV infections can not be detected using currently available commercial assays, probably because of mismatches between the template and primers/probes. By aligning the HCV sequences, we developed a duplex real-time reverse transcriptase-polymerase chain reaction (RT-PCR assay using 2 sets of primers/probes and a specific armored RNA as internal control. The 2 detection probes were labelled with the same fluorophore, namely, 6-carboxyfluorescein (FAM, at the 5' end; these probes could mutually combine, improving the power of the test. Results The limit of detection of the duplex primer/probe assay was 38.99 IU/ml. The sensitivity of the assay improved significantly, while the specificity was not affected. All HCV genotypes in the HCV RNA Genotype Panel for Nucleic Acid Amplification Techniques could be detected. In the testing of 109 serum samples, the performance of the duplex real-time RT-PCR assay was identical to that of the COBAS AmpliPrep (CAP/COBAS TaqMan (CTM assay and superior to 2 commercial HCV assay kits. Conclusions The duplex real-time RT-PCR assay is an efficient and effective viral assay. It is comparable with the CAP/CTM assay with regard to the power of the test and is appropriate for blood-donor screening and laboratory diagnosis of HCV infection.

  17. The analytic impact of a reduced centrifugation step on chemistry and immunochemistry assays: an evaluation of the Modular Pre-Analytics.

    Science.gov (United States)

    Koenders, Mieke M J F; van Hurne, Marco E J F; Glasmacher-Van Zijl, Monique; van der Linde, Geesje; Westerhuis, Bert W J J M

    2012-09-01

    The COBAS 6000 system can be completed by a Modular Pre-Analytics (MPA), an integrated laboratory automation system that streamlines preanalysis. For an optimal throughput, the MPA centrifuges blood collection tubes for 5 min at 1885 × g - a centrifugation time that is not in concordance with the World Health Organization guidelines which suggest centrifugation for 10/15 min at 2000-3000 × g. In this study, the analytical outcome of 50 serum and 50 plasma samples centrifuged for 5 or 10 min at 1885 × g was investigated. The study included routine chemistry and immunochemistry assays on the COBAS 6000 and the Minicap capillary electrophoresis. Deming-fit and Bland-Altman plots of the 5-min and 10-min centrifugation steps indicated a significant correlation in serum samples. The lipaemia index in plasma samples centrifuged for 5 min displayed a statistically significant variation when compared with the 10-min centrifugation. Preanalytical centrifugation can be successfully down-scaled to a duration of 5 min for most routine chemistry and immunochemistry assays in serum and plasma samples. To prevent inaccurate results in plasma samples with an increased lipaemia index from being reported, the laboratory information system was programmed to withhold results above certain lipaemia indices. The presented data support the use of a 5-min centrifugation step to improve turnaround times, thereby meeting one of the desires of the requesting clinicians.

  18. HCV infection among Saudi population: high prevalence of genotype 4 and increased viral clearance rate.

    Directory of Open Access Journals (Sweden)

    Ahmed S Abdel-Moneim

    Full Text Available HCV is a major etiological agent of liver disease with a high rate of chronic evolution. The virus possesses 6 genotypes with many subtypes. The rate of spontaneous clearance among HCV infected individuals denotes a genetic determinant factor. The current study was designed in order to estimate the rate of HCV infection and ratio of virus clearance among a group of infected patients in Saudi Arabia from 2008 to 2011. It was additionally designed to determine the genotypes of the HCV in persistently infected patients. HCV seroprevalence was conducted on a total of 15,323 individuals. Seropositive individuals were tested by Cobas AmpliPrep/Cobas TaqMan HCV assay to determine the ratio of persistently infected patients to those who showed spontaneous viral clearance. HCV genotyping on random samples from persistently infected patients were conducted based on the differences in the 5'untranslated region (5'UTR. Anti-HCV antibodies were detected in 7.3% of the totally examined sera. A high percentage of the HCV infected individuals experienced virus clearance (48.4%. HCV genotyping revealed the presence of genotypes 1 and 4, the latter represented 97.6% of the tested strains. Evidences of the widespread of the HCV genotype 4 and a high rate of HCV virus clearance were found in Saudi Arabia.

  19. RANCANG BANGUN PROGRAM PENGEDITAN KURVA B-SPLINE MULTIRESOLUSI BERBASIS WAVELETS

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    Nanik Suciati

    2002-07-01

    Full Text Available Penelitian ini menyusun representasi multiresolusi untuk kurva B-spline kubik yang menginterpolasi titik-titik ujung dengan basis wavelets. Representasi multiresolusi ini digunakan untuk mendukung beberapa tipe pengeditan kurva, yaitu penghalusan kurva dengan tingkat resolusi kontinyu untuk menghilangkan detail-detail kurva yang tidak diinginkan, pengeditan bentuk keseluruhan kurva dengan tetap mempertahankan detaildetailnya, perubahan detail-detail kurva tanpa mempengaruhi bentuk keseluruhannya, dan pengeditan satubagian tertentu dari kurva melalui manipulasi secara langsung terhadap titik-titik kontrolnya. Untuk menguji kemampuan representasi multiresolusi dalam mendukung empat tipe manipulasi kurva tersebut, disusun program pengeditan kurva dengan menggunakan bahasa pemrograman Visual C++ pada komputer Pentium 133 MHz, memori 16 Mbyte, sistem operasi Windows 95, lingkungan pengembangan Microsoft DevelopmentStudio 97 dan pustaka Microsoft Foundation Class. Dari hasil uji coba program diketahui bahwa representasi multiresolusi memberikan dukungan yang sangat baik terhadap tipe-tipe pengeditan seperti yang disebutkan di atas. Representasi multiresolusi tidak membutuhkan memori penyimpan ekstra selain dari yang digunakan untuk menyimpan titik kontrol. Dari hasil uji coba program menggunakan ratusan titik kontrol, algoritma berjalan cukup cepat dan memadai berkaitan dengan tuntutan komunikasi interaktif antara user dan program.Kata kunci: B-Spline, Wavelet, Multiresolusi

  20. Perancangan Implementasi E-Learning Berbasis Moodle Dalam Matakuliah Statistika Program Studi Pendidikan Teknik Informatika Dan Komputer

    Directory of Open Access Journals (Sweden)

    Affni Syaviera Nova

    2017-06-01

    Full Text Available Penelitian dilakukan dengan tujuan merancang implementasi e-learning berbasis Moodle berupa website dalam matakuliah Statistika program studi Pendidikan Teknik Informatika dan Komputer. Sistem e-learning ini dirancang untuk diimpelementasikan pada semua matakuliah yang ada pada program studi Pendidikan Teknik Informatika dan Komputer, sehingga membantu kegiatan perkuliahan. Sebagai pengembangan awal, sistem e- learning ini diuji coba pada matakuliah statistika. Penelitian ini menggunakan desain penelitian dan pengembangan (Research and Development menurut Sugiyono (2010. Subyek penelitian yaitu dosen statistika dan mahasiswa yang telah mengikuti perkuliahan Statistika ditentukan secara purposive sampling. Data yang diambil adalah kelayakan dari segi materi dan media melalui angket, dan tanggapan mahasiswa melalui angket. Tanggapan ahli menunjukkan e-learning berbasis Moodle sangat baaik dari segi media dan bagus dari segi materi. Hasil angket tanggapan siswa pada uji coba skala kecil menunjukkan bahwa mayoritas siswa memberikan tanggapan positif terhadap kegiatan pembelajaran menggunakan media e-learning berbasis Moodle. Produk final e-learning berbasis Moodle berisi modul, video, ppt, chat, kelas virtual dan forum diskusi. Berbagai konten dan fasilitas yang dimiliki e-learning yang dikembangkan membuat pembelajaran Sistem Gerak menjadi lebih menarik. Berdasarkan hasil analisis dan pembahasan dapat disimpulkan bahwa e-learning berbasis Moodle sesuai dan layak diterapkan pada matakuliah Statistika.

  1. PENGOLAHAN LIMBAH CAIR INDUSTRI FARMASI FORMULASI DENGAN METODE ANAEROB-AEROB DAN ANAEROB-KOAGULASI

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    Farida Crisnaningtyas

    2016-05-01

    Full Text Available Studi ini membahas mengenai pengolahan limbah cair industri farmasi dalam skala laboratorium dengan menggunakan konsep anaerob-kimia-fisika dan anaerob-aerob. Proses anaerob dilakukan dengan menggunakan reaktor Upflow Anaerobic Sludge Bed reactor (UASBr pada kisaran OLR (Organic Loading Rate 0,5 – 2 kg COD/m3hari, yang didahului dengan proses aklimatisasi menggunakan substrat gula. Proses anaerob mampu memberikan efisiensi penurunan COD hingga 74%. Keluaran dari proses anaerob diolah lebih lanjut dengan menggunakan dua opsi proses: (1 fisika-kimia, dan (2 aerob. Koagulan alumunium sulfat dan flokulan kationik memberikan efisiensi penurunan COD tertinggi (73% pada kecepatan putaran masing-masing 100 rpm dan 40 rpm. Uji coba aerob dilakukan pada kisaran MLSS antara 4000-5000 mg/L dan mampu memberikan efisiensi penurunan COD hingga 97%. Hasil uji coba menunjukkan bahwa efisiensi penurunan COD total yang dapat dicapai dengan menggunakan teknologi anaerob-aerob adalah 97%, sedangkan kombinasi anaerob-koagulasi-flokulasi hanya mampu menurunkan COD total sebesar 72,53%. Berdasarkan hasil tersebut, kombinasi proses anaerob-aerob merupakan teknologi yang potensial untuk diaplikasikan dalam sistem pengolahan limbah cair industri farmasi. 

  2. Performance and Logistical Challenges of Alternative HIV-1 Virological Monitoring Options in a Clinical Setting of Harare, Zimbabwe

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    Pascale Ondoa

    2014-01-01

    Full Text Available We evaluated a low-cost virological failure assay (VFA on plasma and dried blood spot (DBS specimens from HIV-1 infected patients attending an HIV clinic in Harare. The results were compared to the performance of the ultrasensitive heat-denatured p24 assay (p24. The COBAS AmpliPrep/COBAS TaqMan HIV-1 test, version 2.0, served as the gold standard. Using a cutoff of 5,000 copies/mL, the plasma VFA had a sensitivity of 94.5% and specificity of 92.7% and was largely superior to the VFA on DBS (sensitivity = 61.9%; specificity = 99.0% or to the p24 (sensitivity = 54.3%; specificity = 82.3% when tested on 302 HIV treated and untreated patients. However, among the 202 long-term ART-exposed patients, the sensitivity of the VFA decreased to 72.7% and to 35.7% using a threshold of 5,000 and 1,000 RNA copies/mL, respectively. We show that the VFA (either on plasma or on DBS and the p24 are not reliable to monitor long-term treated, HIV-1 infected patients. Moreover, achieving acceptable assay sensitivity using DBS proved technically difficult in a less-experienced laboratory. Importantly, the high level of virological suppression (93% indicated that quality care focused on treatment adherence limits virological failure even when PCR-based viral load monitoring is not available.

  3. PENGEMBANGAN MULTIMEDIA PEMBELAJARAN INTERAKTIF KOMPETENSI DASAR PEMASANGAN SISTEM PENERANGAN DAN WIRING KELISTRIKAN DI SMK

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    Nopriyanti Nopriyanti

    2015-06-01

    Full Text Available Penelitian ini bertujuan untuk: (1 menghasilkan multimedia pembelajaran interaktif kompetensi dasar pemasangan sistem penerangan dan wiring kelistrikan; (2 mengetahui kualitas multimedia pembelajaran interaktif; dan (3 mengetahui efektifitas multimedia pembelajaran interaktif kompetensi dasar pemasangan sistem penerangan dan wiring kelistrikan pada kelas XI SMK bidang keahlian Teknik Kendaraan Ringan. Penelitian ini merupakan penelitian dan pengembangan. Validasi multimedia dilakukan oleh ahli materi dan ahli media. Subjek uji coba penelitian ini adalah 32 siswa kelas XI SMKN 2 Depok, Sleman, Yogyakarta bidang keahlian Teknik Kendaraan Ringan. Kesimpulan dari penelitian ini adalah: (1 produk multimedia pembelajaran interaktif kompetensi dasar pemasangan sistem penerangan dan wiring kelistrikan layak digunakan; (2 kualitas multimedia interaktif ini sangat baik, hasil penilaian ahli ditinjau dari pembelajaran 66 (baik, isi sebesar 54 (baik, aspek tampilan 97 (baik, dan program 50 (baik, sedangkan hasil dari penilaian peserta didik uji coba lapangan pada aspek pembelajaran1277 (sangat baik, isi 1195 (sangat baik, tampilan 1562 (sangat baik, dan pemograman 519 (sangat baik; (3 Produk multimedia pembelajaran interaktif kompetensi dasar pemasangan sistem penerangan dan wiring kelistrikan efektif meningkatkan hasil belajar siswa. Rata-rata penilaian hasil belajar siswa ketika pretest adalah 63,75 dengan nilai terendah 50 dan nilai tertinggi 75. Sedangkan rata-rata nilai posttest sebesar 78,75 dengan nilai terendah 65 dan nilai tertinggi 90.

  4. Rancang Bangun Permainan Edukasi Matematika dan Fisika dengan Memanfaatkan Accelerometer dan Physics Engine Box2d pada Android

    Directory of Open Access Journals (Sweden)

    Putri Nikensasi

    2012-09-01

    Full Text Available Perkembangan industri permainan mobil yang semakin meningkat memotivasi para pengembang permainan mobil untuk membuat inovasi-inovasi terbaru dalam permainannya. Salah satu inovasi tersebut yaitu permainan edukasi, namun saat ini permainan edukasi kurang diminati karena aturan permainannya yang cenderung membosankan. Pengembangan permainan ini ditujukan untuk membuat sebuah permainan mobil edukasi dengan memanfaatkan teknologi mobil terbaru dalam aturan permainannya sehingga permainan tersebut tidak membosankan. Aplikasi yang dikembangkan merupakan aplikasi permainan mobil edukasi yang mengajarkan ilmu matematika dan fisika kepada pemainnya. Teknologi baru yang digunakan dalam permainan ini yaitu accelerometer pada sistem operasi Android yang diintegrasikan dengan Physics Engine Library Box2D. Selain itu, permainan ini dibangun dengan menggunakan Adobe Flash CS5.5 dan bahasa pemrograman Actionscript 3 (AS3 serta Adobe Air sebagai runtime aplikasinya. Uji coba dilakukan dengan menggunakan perangkat Android versi 2.3. Dari uji coba dapat disimpulkan bahwa Adobe Flash CS5.5 dapat digunakan untuk membuat permainan mobil edukasi pada perangkat Android dan mengakses sensor accelerometer-nya.

  5. PENERAPAN ALGORITMA C4.5 UNTUK PREDIKSI PENGGUNAAN JENIS KONTRASEPSI BERBASIS WEB

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    Rusda Wajhillah

    2017-09-01

    Keluarga Berencana (KB merupakan suatu program pemerintah yang dirancang untuk menyeimbangkan antara kebutuhan dan jumlah penduduk dengan menggunakan alat kontrasepsi. Kurangnya pengetahuan tentang kontrasepsi menyebabkan tidak sedikit akseptor lebih memilih menggunakan kontrasepsi berdasarkan coba-coba atau bahkan mengikuti saran dari orang lain yang kurang paham terhadap alat kontrasepsi. Oleh sebab itu, diperlukan adanya tindakan/penanganan khusus untuk mempermudah para akseptor dalam memilih kontrasepsi yang efektif dan sesuai dengan kondisi tubuhnya. Algoritma C4.5 yaitu metode pohon keputusan mengubah fakta yang sangat besar menjadi pohon keputusan yang merepresentasikan aturan. Aturan dapat dengan mudah dipahami dengan bahasa alami.Untuk itu, dalam penelitian ini akan dilakukan analisa data penggunaan jenis kontrasepsi menggunakan klasifikasi data mining yakni algoritma C4.5 dengan menggunakan beberapa parameter diantaranya usia, jumlah anak, tekanan darah dan riwayat penyakit yang akan diaplikasikan dalam bentuk web guna mempermudah para akseptor dalam mendapatkan nilai informasi yang lebih cepat dan fleksibel. Dari 130 jumlah kasus yang terdiri dari 104 kasus akseptor pengguna kontrasepsi hormonal dan 26 kasus pengguna kontrasepsi non hormonal yang didapat dari Posyandu Desa Nyangkowek Kecamatan Cicurug, maka didapatkan 14 rule yang dihasilkan dari pohon keputusan algoritma C4.5 dengan jumlah class non hormonal sebanyak 8 rule dan jumlah class hormonal sebanyak 6 rule serta dievaluasi dengan pengujian Cross Validation yangmenghasilkan tingkat akurasi sebesar 85,38%, sehingga dapat disimpulkan bahwa penelitian ini dapat membantu para akseptor KB dalam memilih jenis kontrasepsi yang efektif. Kata Kunci: Akseptor, Algoritma C4.5, Kontrasepsi, Sistem Pakar

  6. Detection of Mycobacterium tuberculosis Complex in Paraffin-Embedded Tissues by the New Automated Abbott RealTime MTB Assay.

    Science.gov (United States)

    Fu, Yung-Chieh; Liao, I-Chuang; Chen, Hung-Mo; Yan, Jing-Jou

    2016-07-01

    The Abbott RealTime MTB assay, launched in June 2014, has been shown to have a competitive performance in the detection of the Mycobacterium tuberculosis (MTB) complex in respiratory specimens. The present study was conducted to investigate the usefulness of the Abbott MTB Realtime assay in the detection of MTB in formalin-fixed paraffin-embedded (FFPE) tissues. A total of 96 FFPE specimens obtained from microbiologically proven MTB cases (N=60) and nontuberculous Mycobacterium cases (N=36) were analyzed. The performance of the Abbott MTB Realtime assay was compared with that of the Roche Cobas TaqMan MTB assay. The overall sensitivity and specificity of the Abbott assay were 63.3% and 97.2%, respectively, compared with 11.7% and 100% for the Cobas assay. The detection rate of the Abbott assay was much higher among 37 acid-fast-positive specimens than among 23 acid-fast-negative specimens (89.3% versus 21.7%, respectively). The detection rate of the assay was higher among 29 resection specimens than among 31 small biopsy specimens (86.2% versus 41.9%, respectively). Our results suggest that the Abbott RealTime MTB assay can be used to differentiate MTB from nontuberculous mycobacterial infections in acid-fast-positive FFPE tissues. © 2016 by the Association of Clinical Scientists, Inc.

  7. QuickASP: PEMBANGKIT KODE PROGRAM ASP UNTUK APLIKASI BASIS DATA BERBASIS WEB

    Directory of Open Access Journals (Sweden)

    Imam Kuswardayan

    2007-01-01

    Full Text Available Dalam pembuatan sistem aplikasi basis data berbasis web, perancangan antarmuka pengguna (presentation layer dan lapisan bisnis (bussiness layer merupakan tahap yang dilalui setelah pemahaman terhadap kebutuhan pengguna sistem. Adanya pola atau keteraturan dalam implementasi tahap ini menyebabkan pengembangan sistem akan lebih efisien jika menggunakan suatu aplikasi yang dapat menghasilkan kerangka dasar aplikasi web dengan cepat untuk kedua lapisan tersebut dan bahkan beserta kode programnya. Pada penelitian ini telah diimplementasikan suatu perangkat lunak yang selanjutnya disebut QuickASP. QuickASP membangkitkan kode ASP untuk membangun  homepage otomatis. Untuk membangkitkan kode ASP, QuickASP membutuhkan komponen berupa basis data dan file Cascading Style Sheets (CSS. Proses awal yang dilakukan QuickASP dalam membangkitkan kode program ASP adalah membaca informasi basis data berupa tabel-tabel, nama field dan tipe data. Setelah itu QuickASP akan membangkitkan file-file ASP beserta file-file pendukungnya berdasarkan hasil pengaturan tampilan halaman web yang dilakukan oleh pengguna.Uji coba QuickASP dilakukan pada tiga jenis basis data yaitu Microsoft Access, Microsoft SQL Server, dan Oracle. Dari hasil uji coba tersebut, QuickASP terbukti dapat membangkitkan homepage otomatis beserta fungsi–fungsi yang disediakan untuk modifikasi record dan fungsi navigasi.Kata kunci: QuickASP, file cascading style sheets, kode program ASP.

  8. Performance evaluation of new automated hepatitis B viral markers in the clinical laboratory: two quantitative hepatitis B surface antigen assays and an HBV core-related antigen assay.

    Science.gov (United States)

    Park, Yongjung; Hong, Duck Jin; Shin, Saeam; Cho, Yonggeun; Kim, Hyon-Suk

    2012-05-01

    We evaluated quantitative hepatitis B surface antigen (qHBsAg) assays and a hepatitis B virus (HBV) core-related antigen (HBcrAg) assay. A total of 529 serum samples from patients with hepatitis B were tested. HBsAg levels were determined by using the Elecsys (Roche Diagnostics, Indianapolis, IN) and Architect (Abbott Laboratories, Abbott Park, IL) qHBsAg assays. HBcrAg was measured by using Lumipulse HBcrAg assay (Fujirebio, Tokyo, Japan). Serum aminotransferases and HBV DNA were respectively quantified by using the Hitachi 7600 analyzer (Hitachi High-Technologies, Tokyo, Japan) and the Cobas AmpliPrep/Cobas TaqMan test (Roche). Precision of the qHBsAg and HBcrAg assays was assessed, and linearity of the qHBsAg assays was verified. All assays showed good precision performance with coefficients of variation between 4.5% and 5.3% except for some levels. Both qHBsAg assays showed linearity from 0.1 to 12,000.0 IU/mL and correlated well (r = 0.9934). HBsAg levels correlated with HBV DNA (r = 0.3373) and with HBcrAg (r = 0.5164), and HBcrAg also correlated with HBV DNA (r = 0.5198; P < .0001). This observation could provide impetus for further research to elucidate the clinical usefulness of the qHBsAg and HBcrAg assays.

  9. PENGEMBANGAN BAHAN AJAR DENGAN MODEL MIND MAP UNTUK PEMBELAJARAN ILMU PENGETAHUAN SOSIAL SMP

    Directory of Open Access Journals (Sweden)

    Lukman Lukman

    2014-12-01

    Full Text Available Penelitian ini bertujuan untuk menghasilkan bahan ajar dengan model mind map yang layak digunakan pada pembelajaran Ilmu Pengetahuan Sosial (IPS untuk siswa SMP, serta mengetahui keefektifan bahan ajar hasil pengembangan. Penelitian ini merupakan penelitian dan pengembangan (Research and Development. Hasil penelitian adalah sebagi berikut: (1 menghasilkan bahan ajar dengan model mind map untuk pembelajaran Ilmu Pengetahuan Sosial siswa SMP yang dikemas dalam bentuk buku dengan materi “Perkembangan pada Masa Islam di Indonesia”. Produk yang dihasilkan layak digunakan untuk pembelajaran berdasarkan validasi dari ahli materi, ahli media, uji coba terbatas, serta uji coba lapangan. (2 Bahan ajar hasil pengembangan untuk siswa kelas VII di SMP N 3 Berbah ini efektif digunakan untuk pembelajaran IPS. Peningkatan skor postes pada kelas yang menggunakan bahan ajar dengan model mind map sebesar 13,87% dengan nilai gain score 0,45 dan ketuntasan siswa 100%. Sedangkan kelas yang menggunakan buku paket IPS dengan peningkatan skor postes sebesar 10,26% dengan nilai gain score 0,35 dan ketuntasan siswa 87,1%. Kata kunci: bahan ajar, mind map, ilmu pengetahuan sosial

  10. PENGEMBANGAN ALAT DESTILATOR BIOETANOL MODEL REFLUK BERTINGKAT DENGAN BAHAN BAKU SINGKONG

    Directory of Open Access Journals (Sweden)

    Rochmad Winarso

    2014-11-01

    Full Text Available ABSTRAK Penyediaan energi di masa depan merupakan permasalahan yang senantiasa menjadi perhatian bagi semua pihak. Seiring dengan meningkatnya pembangunan, kebutuhan akan energi terus meningkat. Disisi lain cadangan minyak bumi sebagai bahan bakar yang paling banyak dipakai saat ini semakin menipis karena sifatnya yang non renewable, oleh karena itu diperlukan upaya untuk mencari bahan bakar alternatif yang renewable sekaligus ramah lingkungan. Bioetanol sebagai salah satu bahan bakar alternatif sampai saat ini belum banyak digunakan. Padahal di Indonesia, banyak sekali sumber daya alam hayati yang dapat digunakan sebagai bahan baku untuk memproduksi bioetanol, salah satunya adalah ubi kayu. Penggunaan bioetanol sebagai bahan bakar didasari oleh sifatnya yang mudah terbakar dan memiliki kalor-bakar netto besar. Tujuan dari penelitian ini adalah mengembangkan alat destilator bioetanol dengan fokus pengembangan pada pengembangan menara refluk dengan sistem bertingkat sehingga diharapkan bisa lebih optimal menghasilkan bioetanol dengan kadar tinggi. Pengembangan alat distilator bioethanol ini dimulai dari proses observasi lapangan yang dilanjutkan dengan studi literatur. Tahapan selajutnya adalah proses perencanaan komponen-komponen dari peralatan tersebut dan dilanjutkan dengan proses pembuatan serta uji coba peralatan. Hasil penelitian ini telah dikembangkan alat destilator bioetanol dengan spesifikasi sebagai berikut: diameter tangki 400 mm, tinggi tangki 500 mm, terbuat dari bahan stainles steel A304 dengan ketebalan 2 mm. Kapasitas tangki yang diijinkan adalah dari volume tabung atau sebesar 40 liter. Dari hasil uji coba pada hasil proses distilasi fermentasi ketela pohon menghasilkan ethanol dengan kadar 92%. Kata kunci: bioetanol, destilator, refluk bertingkat.

  11. PENDIDIKAN KARAKTER BANGSA BERBASIS STRATEGI PEMBELAJARAN PAKEM MELALUI PERMAINAN CINCIN DI JEMPOL TANGAN (Karya Inovasi Pembelajaran Sekolah Dasar

    Directory of Open Access Journals (Sweden)

    Ani Adibatin

    2016-02-01

    Full Text Available Berhasil tidaknya pencapaian tujuan pembelajaran sangat ditentukan oleh kemampuan guru dalam mengelola kelas, mengelola siswa, memilih strategi pembelajaran, serta kebermaknaan dalam memberikan tugas pada siswa. Berkaitan dengan permasalahan tersebut, penulis sebagai pengawas mengembangkan alat permainan inovatif yang bisa dipakai oleh semua guru, baik guru kelas, guru mata pelajaran, maupun guru ekstra kurikuler. Alat permainan ini bisa dipakai oleh semua siswa dari berbagai tingkatan kelas, berbagai tingkat jenjang sekolah, dan untuk pembelajaran materi yang berbeda. Alat permainan inovatif pembelajaran ini dikembangkan dengan tujuan agar peserta didik bisa belajar sambil bermain dan bermain sambil belajar. Disamping itu, untuk membantu para guru dalam menanamkan pendidikan karakter, sehingga peserta didik menjadi anak yang berkarakter, berwatak sesuai dengan nilai-nilai Pancasila demi terwujudnya tujuan pendidikan nasional. Uji coba alat permainan inovatif ini dilakukan di 9 SD binaan Kecamatan Tuntang. Dari hasil uji coba diperoleh temuan bahwa ada perbedaan yang sangat signifikan antara pendidikan karakter pada pembelajaran tanpa alat permainan inovatif dibandingkan dengan pembela-jaran yang menggunakan alat permainan cincin akik di jempol tangan. Nilai rata-rata pembelajaran tanpa alat inovatif 76,55 %, sedangkan nilai rata-rata dengan menggunakan alat permainan cincin akik di jempol sebesar 86,88 %. Hasil pembelajaran menggunakan alat peraga inovatif ini menunjukkan bah-wa melalui strategi pembelajaran PAKEM dengan bermain cincin akik di jempol tangan dapat membangun karakter peserta didik sampai 11,33 %.

  12. Selenium status in soil, water and essential crops of Iran

    Directory of Open Access Journals (Sweden)

    Nazemi Lyly

    2012-11-01

    Full Text Available Abstracts As a contributing factor to health, the trace element selenium (Se is an essential nutrient of special interest for humans and all animals. It is estimated that 0.5 to 1 billion people worldwide suffer from Se deficiency. In spite of the important role of Se, its concentrations in soil, water and essential crops have not been studied in Iran. Therefore, the main aim of the current study was to determine the Se content of soil, water, and essential crops (rice in North, wheat in Center, date, and pistachio in South of different regions of Iran. Sampling was performed in the North, South, and Central regions of Iran. In each selected area in the three regions, 17 samples of surface soil were collected; samples of water and essential crops were also collected at the same sampling points. Upon preliminary preparation of all samples, the Se concentrations were measured by ICP-OES Model Varian Vista-MPX. The amount of soil-Se was found to be in the range between 0.04 and 0.45 ppm in the studied areas; the Se content of soil in the central region of Iran was the highest compared to other regions (p

  13. COINTOF mass spectrometry: design of a time-of-flight analyzer and development of the analysis method

    International Nuclear Information System (INIS)

    Teyssier, C.

    2012-01-01

    DIAM (Device for the irradiation of molecular clusters) is a newly designed experimental setup to investigate processes resulting from the irradiation of molecular nano-systems by 20-150 keV protons. One of its specificities relies on the original technique of mass spectrometry named COINTOF (Correlated Ion and Neutral Time Of Flight) consisting in correlated measurements of the time of flight of charged and neutral fragments produced by the dissociation of a single molecular ion parent. A strategy of treatment and analysis of the detection signals was developed to distinguish two fragments close in time ( 3 O + and two water molecules. The distribution of the time of flight difference between the two neutral fragments is measured providing an estimate of the kinetic energy release of a few eV. In parallel, a second time-of-flight mass spectrometer was designed. It associates a linear time-of-flight and an orthogonal time-of-flight and integrates position detectors (delay line anode). Simulations demonstrate the potentials of the new analyzer. Finally, research works were led at the laboratory R.-J. A. Levesque (Universite de Montreal) on the imaging capabilities of the multi-pixel detectors of the MPX-ATLAS collaboration. (author)

  14. Theoretical Calculation of Jet Fuel Thermochemistry. 1; Tetrahydrodicylopentadiene (JP10) Thermochemistry Using the CBS-QB3 and G3(MP2)//B3LYP Methods

    Science.gov (United States)

    Zehe, Michael J.; Jaffe, Richard L.

    2010-01-01

    High-level ab initio calculations have been performed on the exo and endo isomers of gas-phase tetrahydrodicyclopentadiene (THDCPD), a principal component of the jet fuel JP10, using the Gaussian Gx and Gx(MPx) composite methods, as well as the CBS-QB3 method, and using a variety of isodesmic and homodesmotic reaction schemes. The impetus for this work is to help resolve large discrepancies existing between literature measurements of the formation enthalpy Delta (sub f)H deg (298) for exo-THDCPD. We find that use of the isodesmic bond separation reaction C10H16 + 14CH4 yields 12C2H6 yields results for the exo isomer (JP10) in between the two experimentally accepted values, for the composite methods G3(MP2), G3(MP2)//B3LYP, and CBS-QB3. Application of this same isodesmic bond separation scheme to gas-phase adamantane yields a value for Delta (sub f)H deg (298) within 5 kJ/mol of experiment. Isodesmic bond separation calculations for the endo isomer give a heat of formation in excellent agreement with the experimental measurement. Combining our calculated values for the gas-phase heat of formation with recent measurements of the heat of vaporization yields recommended values for Delta (sub f)H deg (298)liq of -126.4 and -114.7 kJ/mol for the exo and endo isomers, respectively.

  15. Behavior of the dynamic magnetic susceptibility in ybco bula ceramics irradiated with gamma rays

    International Nuclear Information System (INIS)

    Leyva Fabelo, A.; Bouza Dominguez, J.; Cruz Inclan, Carlos M.

    2001-01-01

    Using measurements of the ac susceptibility, the behavior with the irradiation dose of YBa2Cu3O7- bulk ceramics synthesized by the classic reaction method in solid state, was studied. A Co60 gamma chamber model MPX-G-25M and a Cs137 source were employed as gamma ray sources. The behavior of the beginning temperature of the normal - superconducting state transition with the exposition dose show, independently of the incident gamma energy, a monotonous growth until reaching a threshold dose, after which, observe a fall, more abrupt in the case of the Co60. This behavior can be explained using the model that postulates the ability of the gamma radiation, in certain dose intervals, to stimulate the structural reordering in the oxygen sublattice. When the irradiation process takes place in the Co60 gamma chamber, the behavior of the superconducting volume fraction of the sample characterizes by the initial sharp fall with the dose, followed with an attenuation of the decrement. In the case of Cs137 irradiation, the behavior of the superconducting volume fraction is similar to the behavior of the Ton with the dose

  16. Phytoextraction based on Indian mustard (Brassica juncea arawali planted on spiked soil by aliquot amount of Lead and Nickel

    Directory of Open Access Journals (Sweden)

    Leela Kaur

    2015-12-01

    Full Text Available Phytoextraction is one of the mechanisms of phytoremediation for removal of heavy metals from contaminated soils. The objective of the present study was to investigate the effect of metal chelants, ethelyne diamine tetraacetic acid (EDTA and salicylic acid (SA, on the accumulation of lead and nickel by Indian mustard (Brassica juncea arawali plants in contaminated soil. Plants were treated with Pb and Ni, each at concentrations of 800 mg/l. EDTA and SA were amended at 0.1 M and 1.0 mM respectively. Plants were harvested and oven-dried. Pb and Ni content were estimated using ICP-OES (Varian Vista-MPX CCD Simultaneous ICP-OES. The samples thus prepared were investigated for metals distribution and morphology in different tissues (root, stem and leaf using energy dispersive X-ray analysis (EDAX spectrometer attached to the scanning electron microscope (SEM. Metal distribution study in different tissues (root, stem, leaf was done by SEM/EDS. The results showed that EDTA increased Pb and Ni uptake as compared to SA.

  17. Effets de rayonnement sur les detecteurs au silicium a pixels du detecteur ATLAS

    CERN Document Server

    Lebel, Celine

    2007-01-01

    Two detection systems are using pixel silicon detectors in the ATLAS detector: the Pixel, which is the subdetector closest to the interaction point, and the MPX network. The activation of the materials present in the Pixel produced by radiation has been measured in two experiments which we performed at CERF (CERN) and NPI-ASCR (Czech Republic). These experimental studies of activation are com- pared with GEANT4 simulations. The results of these comparisons show that the simulation can predict the activities with a precision of an order of magnitude. They also show that GEANT4 fails to produce certain radioisotopes seen in the experimental activation studies. The contribution to background and the resid- ual doses due to the desintegration of the radioisotopes produced by fast neutrons (category in which falls the expected average neutron energy of 1 MeV in ATLAS) are extrapolated to ATLAS conditions. It is found that this background in the AT- LAS Pixel subdetector will be negligible and that the doses are we...

  18. Capital Structure Analysis Of EBX Group’s Companies: Combining Theory And Practice

    Directory of Open Access Journals (Sweden)

    Matheus da Costa Gomes

    2017-12-01

    Full Text Available According to market timing theory, companies tend to issue stocks or debts in order to exploit the opportunity window and this behavior is a significant determinant for capital structure. Based on this assertion and recent evidence found in the Brazilian market, this paper has the objective of analyzing the market timing behavior of the six publicly-traded companies in BM&FBOVESPA of the EBX Group (MPX, MMX, OXX, LLX, OSX and CCX, until mid-2013. For this purpose, the methodology used was a case study and as the main source of evidence indicators related to capital structure and stock market. An econometric approach to panel data has also been inserted to strengthen analyzes. The results show that the financial decisions made by managers of the EBX Group indicate attempts to exploit the opportunity windows related to the stock market, mainly measured by Shiller's price-to-earnings ratio (Shiller PE, an aggregate market index, as well as the market-to-book (M/B ratio of each company analyzed. This paper contributes to the discussion of market timing in Brazil, combining theory and practice in an intuitive and dynamic way bringing aspects related to companies and market conditions.

  19. Methods for calibrating the gain and offset of the DSSC detector for the European XFEL using X-ray line sources

    Science.gov (United States)

    Schlee, S.; Weidenspointner, G.; Moch, D.; Kuster, M.; Porro, M.

    2016-01-01

    The DSSC (DEPFET Sensor with Signal Compression) will be a silicon based, 2d 1 Mpx imaging detector for the European X-ray Free Electron Laser Facility (XFEL.EU) in Hamburg, Germany. The DSSC is foreseen for soft X-radiation from 0.5 keV up to 6 keV . Driven by its scientific requirements, the design goals of the detector system are single photon detection, high dynamic range and a high frame rate of up to 4.5 MHz. Signal compression and amplification will be performed in the silicon sensor pixels yielding a low signal noise. Utilizing an in-pixel active filtering stage and an 8/9-bit ADC, the detector will provide parallel read-out of all pixels. In order to calibrate offset and gain, the procedure currently under investigation relies on determining peak positions in measurements with calibration line sources such as 55Fe. Here the status of studies of the stability and performance of a parameterized fit function designed for this task will be presented.

  20. Optical aberrations in underwater photogrammetry with flat and hemispherical dome ports

    Science.gov (United States)

    Menna, Fabio; Nocerino, Erica; Remondino, Fabio

    2017-06-01

    The paper analyses differences between dome and flat port housings used for underwater photogrammetry. The underwater environment negatively affects image quality and 3D reconstructions, but this influence on photogrammetric measurements, so far, has not been addressed properly in the literature. In this work, motivations behind the need for systematic underwater calibrations are provided, then experimental tests using a specifically designed photogrammetric modular test object in laboratory and at sea are reported. The experiments are carried out using a Nikon D750 24 Mpx DSLR camera with a 24 mm f2.8 AF/D lens coupled with a NIMAR NI3D750ZM housing, equipped first with a dome and, successively, with a flat port. To quantify the degradation of image quality, MTF measurements are carried out, then the outcomes of self-calibrating bundle adjustment calibrations are shown and commented. Optical phenomena like field curvature as well as chromatic aberration and astigmatism are analysed and their implications on the degradation of image quality is factored in the bundle adjustment through a different weighting of 2D image observations.

  1. Curved sensors for compact high-resolution wide-field designs: prototype demonstration and optical characterization

    Science.gov (United States)

    Chambion, Bertrand; Gaschet, Christophe; Behaghel, Thibault; Vandeneynde, Aurélie; Caplet, Stéphane; Gétin, Stéphane; Henry, David; Hugot, Emmanuel; Jahn, Wilfried; Lombardo, Simona; Ferrari, Marc

    2018-02-01

    Over the recent years, a huge interest has grown for curved electronics, particularly for opto-electronics systems. Curved sensors help the correction of off-axis aberrations, such as Petzval Field Curvature, astigmatism, and bring significant optical and size benefits for imaging systems. In this paper, we first describe advantages of curved sensor and associated packaging process applied on a 1/1.8'' format 1.3Mpx global shutter CMOS sensor (Teledyne EV76C560) into its standard ceramic package with a spherical radius of curvature Rc=65mm and 55mm. The mechanical limits of the die are discussed (Finite Element Modelling and experimental), and electro-optical performances are investigated. Then, based on the monocentric optical architecture, we proposed a new design, compact and with a high resolution, developed specifically for a curved image sensor including optical optimization, tolerances, assembly and optical tests. Finally, a functional prototype is presented through a benchmark approach and compared to an existing standard optical system with same performances and a x2.5 reduction of length. The finality of this work was a functional prototype demonstration on the CEA-LETI during Photonics West 2018 conference. All these experiments and optical results demonstrate the feasibility and high performances of systems with curved sensors.

  2. Importância da sustentabilidade para as empresas do setor de energia elétrica: utilização de relatório de sustentabilidade com base no GRI

    Directory of Open Access Journals (Sweden)

    Leonardo Fabris Lugoboni

    2015-08-01

    Full Text Available The Sustainability Report is a tool that aims to give greater transparency to the business activities and increase dialogue with the organization of society, keeping in mind the need that businesses and organizations need to communicate the success and challenges of their social and environmental strategies and ethical coherence of its operations. The demonstration is used by companies to promote and highlight their sustainable practices. This research sought to understand how companies in the electric energy sector, listed on the BM&FBOVESPA as Novo Mercado (the higher level of Corporate Governance and Level 1 Corporate Governance disseminate to stakeholders their sustainability reports. Documentary analysis was performed through the sustainability reports of electric companies: CEEE, Cemig, CESP, Copel, CPFL, CTEEP, EDP, Eletrobrás, Equatorial Light, MPX (lacks any base of reports and Tractebel. We conducted research reports of companies mentioned 2010 , 2011 e 2012, which was seen a great evolution in the dissemination of the indicators of GRI - Global Reporting Initiative, since they are recognized internationally, which gives companies greater reliability and transparency in its information.

  3. PENGEMBANGAN WEB INTRANET FISIKA UNTUK MENINGKATKAN PENGUASAAN KONSEP DAN KEMAMPUAN PEMECAHAN MASALAH SISWA SMK

    Directory of Open Access Journals (Sweden)

    A. Doyan

    2014-07-01

    Full Text Available Penelitian ini bertujuan untuk mengembangkan media pembelajaran web intranet fisika dan mengetahui pengaruhnya terhadap penguasaan konsep dan kemampuan pemecahan masalah siswa. Penelitian ini menggunakan desain penelitian dan pengembangan model Borg dan Gall yang dimodifikasi menjadi tiga tahap, yaitu tahap studi pendahuluan, tahap pengembangan media,dan tahap uji coba media. Tahap studi pendahuluan dilaksanakan dengan studi kepustakaan dan survei awal. Tahap pengembangan media menghasilkan draf awal media. Penelitian dilanjutkan dengan tahap implementasi uji coba terbatas dan uji coba lebih luas media pembelajaran web intranet fisika di SMKN 2 Praya Tengah. Pembelajaran materi usaha, energi, dan daya di kelas eksperimen menggunakan web intranet fisika sedangkan di kelas kontrol menggunakan pembelajaran konvensional. Kedua kelas dianalisis menggunakan uji perbedaan rata-rata (Uji t atau Uji Mann-Whitney dan skor gain ternormalisasi (N-gain. Berdasarkan hasil penelitian dapat disimpulkan bahwa pembelajaran web intranet fisika efektif meningkatkan penguasaan konsep tetapi tidak efektif meningkatkan kemampuan pemecahan masalah siswa SMK.ABSTRACTThe research was aimed at developing a learning media of physics intranet web and knowing its impacts to the student’s concept comprehension and problem solving skills. The research used a research design and development model of Borg and Gall which was modified into three stages; those were stage of preliminary study, stage of media development, and stage of media testing.The stage of preliminary study was conducted by having literature review and initial survey. Furthermore media development generated an initial draft of media. The research was continued with the stage of limited testing and more extensive testing implementation of physics intranet web learning media at SMKN 2 Praya Tengah. The learning material of work, energy and power in the experimental group used the physics intranet web, while the

  4. PENGEMBANGAN MODUL GEOGRAFI PARIWISATA BERBASIS PAKET WISATA PULAU LOMBOK SEBAGAI UPAYA MEMUPUK RASA CINTA TANAH AIR PADA MAHASISWA

    Directory of Open Access Journals (Sweden)

    Andrinata Andrinata

    2016-10-01

    Full Text Available The purpose of the study is to produce the tourism geography module based on the Lombok tourism packages that is prepared in accordance with the module design of C Michael and Stephen J. Page. This study is designed with Dick & Carey model and simplified into six steps. The quality of product is known through the lecturer’s feedback and students during the field test. The trial subjects are the students of Geography Education STKIP Hamzanwadi Selong in the sixth semester in year 2013 who have taken the course. Based on the results of validation and field trials, the numbers of scores are obtained namely: (a the assessment of the expert design towards the components of the module is 82.7%, (b the assessment of the content/materials to components of the module is 83%, (c the assessment of the language expert of language towards the module components is 76%, (d the assessment of the lecturer of the course and students towards the questionnaires is distributed associated with the products and developed each score 84.28% and 86.4%. The average value of the results of validation and field trials, the module is developed and appropriately used as learning sources with percentage 82.5%. Tujuan penelitian ini ialah menghasilkan modul Geografi Pariwisata Berbasis Paket Wisata Pulau Lombok yang disusun sesuai dengan desain modul C. Michael Hall dan Stephen J. Page. Penelitian ini didesain dengan pendekatan penelitian pengembangan model Dick & Carey yang disederhanakan menjadi enam langkah. Kualitas produk diketahui melalui hasil tanggapan dari dosen pengampu matakuliah dan mahasiswa pada saat uji lapangan. Subjek uji coba yakni mahasiswa Program Studi Pendidikan Geografi STKIP Hamzanwadi Selong pada semester VI angkatan 2013 yang telah menempuh matakuliah tersebut. Berdasarkan hasil validasi dan uji coba lapangan, jumlah skor yang didapat yakni: (a penilaian ahli desain pembelajaran terhadap komponen modul adalah 82,7, (b penilaian ahli isi

  5. Pengembangan problem based learning dengan assessment for learning berbantuan smartphone dalam pembelajaran matematika

    Directory of Open Access Journals (Sweden)

    Muhammad Ridlo Yuwono

    2017-11-01

    Full Text Available [Bahasa]: Penelitian ini bertujuan untuk menghasilkan model Problem Based Learning (PBL menggunakan penilaian Assessment for Learning (AfL berbantuan smartphone, disingkat PBL-AfL-S yang valid, praktis dan efektif untuk mendukung implementasi kurikulum 2013 di SMA. Tahap-tahap pengembangan model PBL-AfL-S terdiri dari penelitian pendahuluan, pengembangan/prototiping, dan evaluasi. Kualitas model PBL-AfL-S mengacu pada kriteria kualitas menurut Nieveen (1999 yaitu valid, praktis, dan efektif. Model PBL-AfL-S diujicobakan di SMA Negeri 3 Klaten dalam dua tahap uji coba. Uji coba tahap I dilaksanakan di kelas XI-IPA 6 dan uji coba tahap II dilaksanakan di kelas XI-IPA 7. Instrumen penelitian terdiri dari: 1 Instrumen penilaian kevalidan komponen model dan perangkat pendukung pembelajaran, 2 Instrumen kepraktisan aktivitas guru dan siswa, dan 3 Instrumen keefektifan yang meliputi angket penilaian diri, lembar penilaian proyek, tes prestasi belajar, dan lembar respon siswa. Hasil penelitian menunjukkan bahwa model PBL-AfL-S dan perangkat pembelajarannya telah memenuhi kriteria valid, praktis dan efektif. Kata kunci: Pembelajaran; Masalah; Asesmen; Smartphone [English]: This study aims to develop a Problem Based Learning (PBL model using Assessment for Learning (AFL with smartphone, abbreviated as PBL-AfL-S as valid, practical and effective to support the implementation of the 2013 curriculum in High School. The stages of developing the PBL-AfL-S model consist of preliminary research, development or prototyping, and evaluation. The quality criteria of PBL-AfL-S refer to Nieveen (1999, i.e. valid, practical, and effective. The PBL-AfL-S model was piloted in SMA Negeri 3 Klaten in two phases. Tryout 1 was conducted in class XI-IPA 6 and tryout 2 was in class XI-IPA 7. The research instruments consist of: 1 The validity instrument of the model and its learning support tools, 2 the practicality of the teacher’s and students’ activity, and 3 The

  6. Evaluation of the NucliSens EasyQ v2.0 assay in comparison with the Roche Amplicor v1.5 and the Roche CAP/CTM HIV-1 Test v2.0 in quantification of C-clade HIV-1 in plasma.

    Directory of Open Access Journals (Sweden)

    Maximilian Muenchhoff

    Full Text Available Human immunodeficiency virus type 1 (HIV-1 genetic diversity poses a challenge to reliable viral load monitoring. Discrepancies between different testing platforms have been observed, especially for non-clade-B virus. Therefore we compare, in antiretroviral therapy (ART-naïve South African subjects predominantly infected with HIV-1 clade-C, three commercially available assays: the COBAS AmpliPrep/COBAS TaqMan HIV-1 Test version 2.0 by Roche (CAP/CTM v2.0, the BioMérieux NucliSens Version 2.0 Easy Q/Easy Mag (NucliSens v2.0 and the Roche COBAS Amplicor HIV-1 Monitor Test Version 1.5 (Amplicor v1.5. Strong linear correlation was observed and Bland-Altman analyses showed overall good agreement between the assays with mean viral load differences of 0.078 log cp/ml (NucliSens v2.0 - Amplicor v1.5, 0.260 log cp/ml (CAP/CTM v2.0 - Amplicor v1.5 and 0.164 log cp/ml (CAP/CTM v2.0 - NucliSens v2.0, indicating lower mean viral load results for the Amplicor v1.5 and higher mean readings for the CAP/CTM v2.0. Consistent with observations following previous comparisons of CAP/CTM v2.0 versus Amplicor v1.5, the CAP/CTM v2.0 assay detected low-level viremia (median 65 cp/ml in more than one-third of those in whom viremia had been undetectable (<20 cp/ml in assays using the NucliSens platform. These levels of viremia are of uncertain clinical significance but may be of importance in early detection of ART resistance in those on treatment. Overall the three assays showed good comparability of results but with consistent, albeit relatively small, discrepancies for HIV-1 clade-C samples, especially in the low-viremic range that should be taken into account when interpreting viral load data.

  7. PERANGKAT PEMBELAJARAN PERISTIWA ALAM DENGAN MODEL COOPERATIVE LEARNING TIPE INSIDE OUTSIDE CIRCLE

    Directory of Open Access Journals (Sweden)

    Diah Sunarsih

    2015-08-01

    Full Text Available Tujuan penelitian ini menghasilkan perangkat pembelajaran IPA dengan model pembelajaran cooperative learning tipe inside outside circle untuk dapat meningkatkan kemampuan berpikir kognitif dan menumbuhkan kemampuan komunikasi ilmiah siswa yang valid materi peristiwa alam. Uji coba skala terbatas dilakukan di SDN 02 Ambowetan. Uji coba skala luas kelas eksperimen SDN 01 Ambowetan VA, sedangkan kelas kontrol SDN 01 Ambowetan VB. Desain uji coba penelitian ini nonequivalent control group design. Prosedur pengembangan dan penelitian dikembangkan mengacu model pengembangan Dick dan Carry terdiri 4 tahap yaitu define, design, develop, dan disseminate. Hasil penelitian diperoleh pengembangan perangkat pembelajaran menerapkan model pembelajaran cooperative learning tipe inside outside circle berupa silabus, RPP, bahan ajar, lembar tes formatif, lembar observasi kemampuan komunikasi ilmiah, dan angket respon siswa valid, efektif, dan praktis diterapkan dalam pembelajaran IPA kelas V sekolah dasar materi peristiwa alam. Perangkat pembelajaran valid dengan nilai skor validitas akhir 3,43. Perangkat pembelajaran efektif terlihat peningkatan hasil uji N-gain menunjukkan hasil 0,50 pada klasifikasi tingkat sedang dan prosentase kemampuan ilmiah kelas eksperimen hasil sebesar 82%. Kriteria praktis dari nilai angket menunjukkan respon siswa kelas eksperimen lebih tinggi dibandingkan kelas kontrol (73% > 67 %.Purpose of this study is produce device the learning cooperative learning type inside outside circle to improve cognitive ability students and foster communication skills scientific a valid on material natural events. Trials limited scale in the SDN 02 Ambowetan. Trials wide scale for experimental class in the SDN 01 Ambowetan 5A, while the control class SDN 01 Ambowetan 5B. Design wide scale nonequivalent control group design. Procedures the development and developed research Dick and Carry consisting of 4 stage define, design, develop, and disseminate

  8. Real-time PCR assays for hepatitis B virus DNA quantification may require two different targets.

    Science.gov (United States)

    Liu, Chao; Chang, Le; Jia, Tingting; Guo, Fei; Zhang, Lu; Ji, Huimin; Zhao, Junpeng; Wang, Lunan

    2017-05-12

    Quantification Hepatitis B virus (HBV) DNA plays a critical role in the management of chronic HBV infections. However, HBV is a DNA virus with high levels of genetic variation, and drug-resistant mutations have emerged with the use of antiviral drugs. If a mutation caused a sequence mismatched in the primer or probe of a commercial DNA quantification kit, this would lead to an underestimation of the viral load of the sample. The aim of this study was to determine whether commercial kits, which use only one pair of primers and a single probe, accurately quantify the HBV DNA levels and to develop an improved duplex real-time PCR assay. We developed a new duplex real-time PCR assay that used two pairs of primers and two probes based on the conserved S and C regions of the HBV genome. We performed HBV DNA quantitative detection of HBV samples and compared the results of our duplex real-time PCR assays with the COBAS TaqMan HBV Test version 2 and Daan real-time PCR assays. The target region of the discordant sample was amplified, sequenced, and validated using plasmid. The results of the duplex real-time PCR were in good accordance with the commercial COBAS TaqMan HBV Test version 2 and Daan real-time PCR assays. We showed that two samples from Chinese HBV infections underestimated viral loads when quantified by the Roche kit because of a mismatch between the viral sequence and the reverse primer of the Roche kit. The HBV DNA levels of six samples were undervalued by duplex real-time PCR assays of the C region because of mutations in the primer of C region. We developed a new duplex real-time PCR assay, and the results of this assay were similar to the results of commercial kits. The HBV DNA level could be undervalued when using the COBAS TaqMan HBV Test version 2 for Chinese HBV infections owing to a mismatch with the primer/probe. A duplex real-time PCR assay based on the S and C regions could solve this problem to some extent.

  9. Preliminary study on the coconut crab (Birgus latro rearing in captive pond

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    . Sulistiono

    2009-01-01

    Full Text Available Preliminary study on the coconut crab (Birgus latro rearing was employed in captive pond at Citarate village, Lebak Regency (Banten from May to December 2008.  The rearing activity was done in captive pond sized 5x5x1.3 m3 divided into 22 smaller ponds sized 1x1x1.3 m3 with a hiding hole (constructed by pile stones, supported by two small ponds sized 30x40x40 cm3 for sea and fresh water stocks, respectively.  The coconut crab (N=22 individuals at cement pond I and N=18 individuals at cement pond II were reared in each small ponds (density: 1 individual/pond, feed by a piece of coconut (20-50 gram per individual in each cement pond.  The coconut and the water (sea and fresh water were replaced for 2-3 times per week. Result of the study showed that survival rate was around 82% (ponds I and 83% (ponds II, and mortality was around 18% (ponds I and 18% (ponds II. The coconut crab growth at captive ponds I and II were around 17.5 and 52 gram per month, respectively. Key words:  Preliminary study, rearing, coconut crab (Birgus latro   ABSTRAK Uji coba pemeliharaan kepiting kelapa (Birgus latro dilakukan di kolam penangkaran di Desa Citarate, Kabupaten Lebak (Banten pada Bulan Mei sampai Desember 2008.  Kegiatan pemeliharaan dilakukan pada bak semen berukuran 5x5x1.3 m2 yang terbagi menjadi 22 bak semen lebih kecil yang berukuran 1x1x1.3 m3 dilengkapi dengan tempat persembunyian (berupa tumpukan batu, serta bak kecil sebagai tempat penampungan air laut dan tawar masing-masing berukuran 30x40x40 cm3. Kepiting kelapa (N=22 ekor pada kolam I dan N=18 pada kolam II dimasukkan ke dalam setiap kolam (kepadatan 1 individu/kolam, dan diberikan pakan utama berupa potongan kelapa ukuran sekitar 20-50 gram per individu per kolam.  Penggantian kelapa dan air (tawar dan laut dilakukan 2-3 kali per minggu. Hasil uji coba pemeliharaan kepiting kelapa menunjukkan bahwa tingkat sintasan (survival rate di kolam peliharaan berkisar 82 (Kolam I dan 83% (Kolam II

  10. Diagnostic efficacy of a real time-PCR assay for Chlamydia trachomatis infection in infertile women in north India

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    Benu Dhawan

    2014-01-01

    Full Text Available Background & objectives: Little is known about the prevalence of Chlamydia trachomatis infection in Indian women with infertility. To improve the diagnosis of C. trachomatis infection in developing countries, there is an urgent need to establish cost-effective molecular test with high sensitivity and specificity. This study was conducted to determine the diagnostic utility of a real time-PCR assay for detention of C. trachomatis infection in infertile women attending an infertility clinic in north India. The in house real time-PCR assay was also compared with a commercial real-time PCR based detection system. Methods: Endocervical swabs, collected from 200 infertile women were tested for C. trachomatis by three different PCR assays viz. in-house real time-PCR targeting the cryptic plasmid using published primers, along with omp1 gene and cryptic plasmid based conventional PCR assays. Specimens were also subjected to direct fluorescence assay (DFA and enzyme immunoassay (EIA Performance of in-house real time-PCR was compared with that of COBAS Taqman C. trachomatis Test, version 2.0 on all in-house real time-PCR positive sample and 30 consecutive negative samples. Results: C. trachomatis infection was found in 13.5 per cent (27/200 infertile women by in-house real time-PCR, 11.5 per cent (23/200 by cryptic plasmid and/or omp1 gene based conventional PCR, 9 per cent (18/200 by DFA and 6.5 per cent (7/200 by EIA. The in-house real time-PCR exhibited a sensitivity and specificity of 100 per cent, considering COBAS Taqman CT Test as the gold standard. The negative and positive predictive values of the in-house real time-PCR were 100 per cent. The in-house real time-PCR could detect as low as 10 copies of C. trachomatis DNA per reaction. Interpretation & conclusions: In-house real time-PCR targeting the cryptic plasmid of C. trachomatis exhibited an excellent sensitivity and specificity similar to that of COBAS Taqman CT Test, v2.0 for detection of C

  11. Pengembangan Modul Pembelajaran Fisika Berbasis Problem Based Learning (PBL pada Materi Gelombang Bunyi untuk Siswa SMA Kelas XII

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    Tri Anita Nur Hasanah

    2017-03-01

    dilakukan dalam tiga tahap yaitu pendefinisian (define, perancangan (design dan pengembangan (develop yang dibatasi sampa uji coba terbatas. Validasi modul oleh 4 validator dan uji coba terbatas  kepada 10 orang siswa. Dari hasil penelitan diperoleh skor segi  materi sebesar 3,59 dengan kriteria layak, segi penyajian sebesar 3,9 dengan kriteria layak, segi bahasa sebesar 3,41 dengan kriteria layak dan hasil uji coba terbatas mendapat rerata skor sebesar  3,6 dengan kriteria sesuai. Dapat disimpulkan bahwa modul pembelajaran fisika berbasis PBL pada materi Gelombang Bunyi untuk siswa SMA kelas XII layak digunakan. Kata Kunci: Modul Pembelajaran Fisika, Problem Based Learning (PBL, Gelombang Bunyi

  12. Whole blood samples for adrenocorticotrophic hormone measurement can be stored at room temperature for 4 hours

    DEFF Research Database (Denmark)

    Christensen, Mette; Madsen, Rikke Fogt; Møller, Line Rosengreen

    2016-01-01

    INTRODUCTION: The aim of this study was to investigate and compare the stability of adrenocorticotrophic hormone (ACTH) in whole blood stored on ice and at room temperature for up to 48 hours. This study differs from previous studies by a larger data material. MATERIALS AND METHODS: EDTA-blood sa......INTRODUCTION: The aim of this study was to investigate and compare the stability of adrenocorticotrophic hormone (ACTH) in whole blood stored on ice and at room temperature for up to 48 hours. This study differs from previous studies by a larger data material. MATERIALS AND METHODS: EDTA......-blood samples from 30 patients were collected, aliquoted and stored on ice or at room temperature for 0, 2, 4, 24, or 48 h before centrifugation, and the plasma was stored frozen until analysis. All samples were analyzed using an automated electrochemiluminescence immunoassay on cobas 6000 e601. The change...

  13. Duplex detection of the Mycobacterium tuberculosis complex and medically important non-tuberculosis mycobacteria by real-time PCR based on the rnpB gene.

    Science.gov (United States)

    Abdeldaim, Guma; Svensson, Erik; Blomberg, Jonas; Herrmann, Björn

    2016-11-01

    A duplex real-time PCR based on the rnpB gene was developed for Mycobacterium spp. The assay was specific for the Mycobacterium tuberculosis complex (MTB) and also detected all 19 tested species of non-tuberculous mycobacteria (NTM). The assay was evaluated on 404 clinical samples: 290 respiratory samples and 114 from tissue and other non-respiratory body sites. M. tuberculosis was detected by culture in 40 samples and in 30 samples by the assay. The MTB assay showed a sensitivity similar to Roche Cobas Amplicor MTB-PCR (Roche Molecular Systems, Pleasanton, CA, USA). There were only nine samples with non-tuberculous mycobacteria detected by culture. Six of them were detected by the PCR assay. © 2016 APMIS. Published by John Wiley & Sons Ltd.

  14. Pengembangan Model Manajemen ICT Center

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    Hakkun Elmunsyah

    2013-01-01

    Full Text Available Abstrak: Pengembangan Model Manajemen ICT Center. Kemendiknas telah melakukan investasi  cukup besar berupa pembangunan Jejaring komputer pendidikan nasional yang disebut Jaringan Pendidikan Nasional (Jardiknas, pada sekolah menengah kejuruan (SMK di seluruh Indonesia yang dikenal dengan nama ICT center. Penelitian ini bertujuan untuk menemukan model manajemen ICT center sesuai karakteristik SMK sehingga dapat memberikan kontribusi mutu pada SMK tersebut. Penelitian ini merupakan penelitian pengembangan atau Research and Development yang dikembangkan oleh Borg and Gall. Hasil secara keseluruhan penelitian menunjukkan berdasarkan uji coba keefektivan kinerja manajemen pada skala terbatas dan lebih luas menunjukkan bahwa model manajemen ICT center memenuhi kriteria sangat efektif. Kata-kata kunci: Jardiknas, SMK, model manajemen ICT center, kontribusi mutu

  15. Serum prolactin revisited

    DEFF Research Database (Denmark)

    Overgaard, Martin; Pedersen, Susanne Møller

    2017-01-01

    regimes across commonly used automated immunoassay platforms. METHODS: Parametric total and monomeric gender-specific reference intervals were determined for six immunoassay methods using female (n=96) and male sera (n=127) from healthy donors. The reference intervals were validated using 27...... and macroprolactinemic; n=27) showed higher discordant classification [mean=2.8; 95% confidence interval (CI) 1.2-4.4] for the monomer reference interval method compared to the post-polyethylene glycol (PEG) recovery cutoff method (mean=1.8; 95% CI 0.8-2.8). The two monomer/macroprolactin discrimination methods did...... not differ significantly (p=0.089). Among macroprolactinemic sera evaluated by both discrimination methods, the Cobas and Architect/Kryptor prolactin assays showed the lowest and the highest number of misclassifications, respectively. CONCLUSIONS: Current automated immunoassays for prolactin testing require...

  16. SURVEI PENANGANAN BROADCAST STORM PROBLEM PADA PROTOKOL ROUTING AODV DI MANET

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    Indera Zainul Muttaqien

    2015-07-01

    Full Text Available Komunikasi multi-hop pada lingkungan MANET dapat melibatkan broadcast paket dalam proses route discovery. Protokol routing pada MANET akan melakukan broadcast paket RREQ dan menjalarkannya ke node tujuan secepat dan seefisien mungkin, dimana paket RREQ dari rute yang optimal adalah paket RREQ yang terlebih dahulu sampai ke tujuan. Aktifitas broadcast yang tidak terkontrol dapat menyebabkan suatu kondisi yang disebut broadcast storm problem. Broadcast storm problem dapat berdampak pada terganggunya kinerja dari protokol routing akibat adanya packet redundancy, contention, dan collision. Broadcast storm problem dapat ditangani dengan membatasi jumlah node yang dapat melakukan broadcast. Tujuan utama dari pembuatan makalah ini adalah merangkum beberapa mekanisme terbaru yang telah diakukan oleh para peneliti untuk menangani broadcast storm problem. Kami juga menyajikan perbandingan dari mekanisme tersebut berdasarkan karakteristik dari mekanisme ditinjau dari kesesuaian dengan beberapa skema penanganan broadcast storm problem yang diajukan oleh peneliti sebelumnya, kebutuhan informasi tertentu antar node, lingkungan uji coba dan apakah mekanisme ini dapat diterapkan pada protokol routing lainnya.

  17. Sistem Identifikasi Kandungan Boraks pada Bakso Daging Sapi Berbasis Android Menggunakan Algoritma Naive Bayes Classifier

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    Sofi Dwi Purwanto

    2017-03-01

    Full Text Available Poin pertama yang menjadi fokus dalam pemenuhan keamanan adalah keamanan dalam bidang pangan (food security. Di Indonesia, masih terdapat beberapa fenomena seperti penggunaan boraks sebagai zat aktif kimia pada bakso. Hal ini masih menjadi tren yang menjadi hambatan dalam pemenuhan hak manusia dalam mewujudkan keamanan pangan. Penelitian ini mengimplementasikan metode naïve bayes classifiersebagai pendeteksi (detektor dengan melakukan grayscale dan melakukan estimasi parameter distribusi fitur objek untuk data citra proses training. Sedangkan proses testing juga akan melalui tahap grayscale, selanjutnya proses identifikasi dengan menggunakan fungsi diskriminan dan hasil estimasi parameter distribusi. Jumlah data yang digunakan dalam penelitian sebesar 840 citra meliputi 780 bakso yang dibuat secara mandiri dan 60 data diperoleh dari hasil survey dilapangan. Hasil uji coba menunjukkan hasil terbaik diperoleh dengan tingkat akurasi sebesar 82.7778%  untuk dimensi citra 3x4 dengan jumlah data yang diidentifikasi secara benar adalah sebanyak 149 dari 180 data yang digunakan.

  18. Pendeteksian Malware pada Lingkungan Aplikasi Web dengan Kategorisasi Dokumen

    Directory of Open Access Journals (Sweden)

    Fransiskus Gusti Ngurah Dwika Setiawan

    2017-03-01

    Full Text Available Jumlah aplikasi berbasis web semakin bertambah seiring dengan perkembangan teknologi informasi. Dengan bertambahnya jumlah aplikasi web, serangan-serangan yang dilakukan terhadap aplikasi-aplikasi web tersebut juga meningkat. Salah satu jenis serangan yang marak dilakukan terhadap aplikasi web adalah penyisipan malware seperti web shell yang dapat memberikan akses bebas terhadap komputer server kepada penyerang.Dalam makalah ini, dijelaskan implementasi aplikasi yang menerapkan teknik kategorisasi dokumen untuk mendeteksi malware atau kode malicious khususnya jenis web shell dengan teknik kategorisasi dokumen. Proses kategorisasi dokumen meliputi praproses dan tokenisasi kode sumber, pembuatan model classifier Multinomial Naive Bayes dan Decision Tree, dan klasifikasi dokumen menggunakan classifier yang telah dibuat. Uji coba yang dilakukan terhadap 718 file kode sumber PHP menghasilkan tingkat precision dari 72% hingga 83% dan recall 83% hingga 97%.

  19. PENGEMBANGAN PERANGKAT PEMBELAJARAN MATEMATIKA YANG MENUNJANG PENDIDIKAN KARAKTER SISWA KELAS IV SEKOLAH DASAR

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    Layin Fauziyah

    2014-07-01

    Full Text Available Penelitian ini bertujuan untuk menghasilkan perangkat pembelajaran matematika yang menun-jang pendidikan karakter siswa kelas V sekolah dasar yang layak. Penelitian ini adalah penelitian pengembangan dengan menggunakan model pengembangan 4-D yang dikembangkan oleh Thiagarajan, Semmel & Semmel yang telah dimodifikasi sehingga memuat tahapan define, design, dan develop. Produk yang dikembangkan adalah perangkat pembelajaran yang terdiri dari RPP, LKS, bahan ajar/buku siswa dan tes hasil belajar. Pengembangan perangkat pembelajaran dimulai dari tahap analisis awal-akhir, analisis peserta didik, analisis materi, analisis tugas, spesifikasi tujuan pembel-ajaran, pemilihan media, pemilihan format, validasi ahli, uji coba terbatas, uji coba lapangan, dan revisi. Instrumen penelitian yang digunakan terdiri dari lembar validasi, lembar observasi karakter siswa, dan lembar observasi kemampuan guru dalam mengelola pembelajaran untuk mengetahui keterlaksanaan RPP yang menunjang pendidikan karakter. Penelitian ini menghasilkan perangkat pembelajaran yang menunjang pendidikan karakter pada materi pecahan. Hasil validasi perangkat pembelajaran yang dikembangkan layak untuk digunakan dengan kategori cukup valid, praktis, dan efektif. Pembelajaran dengan menggunakan perangkat yang dikembangkan dapat membentuk karakter jujur, disiplin, dan bertanggung jawab. Berdasarkan pengamatan yang telah dilakukan, perangkat pembelajaran matematika yang dikembangkan pada uji coba terbatas dan uji coba lapangan menunjukkan peningkatan karakter siswa di setiap pertemuan. _________________________________________________________________________________________________________________________________________________________________________________________________________ DEVELOPING MATHEMATIC TEACHING KITS THAT SUPPORT THE CHARACTER EDUCATION OF THE STUDENTS IN CLASS V OF ELEMENTARY SCHOOLS ABSTRACT This research aims to develop appropriate mathematic teaching kits that support

  20. Early Biochemical Screening for Fetal Aneuploidy in the First Trimester

    DEFF Research Database (Denmark)

    Tørring, Niels

    2013-01-01

    Background Screening for fetal trisomy 21 in the first trimester includes analysis of the serological markers pregnancy-associated plasma protein A (PAPP-A) and free beta human choriogonadotropin (free βhCG). With the recent launch of the PAPP-A free βhCG and assays on the Roche Cobas and Elecsys...... assays showed slopes of 0.94 and 0.95 and Pearson’s correlation of r = 0.981 and r = 0.987 respectively. Similar comparison to AutoDELFIA PerkinElmer Perkin gave slopes of 0,83 (free βhCG) and 1.20 (PAPP-A). With a cut off at 1:300 the overall sensitivity of the first trimester screening including nuchal...

  1. Differential Detection of Human Papillomavirus Genotypes and Cervical Intraepithelial Neoplasia by Four Commercial Assays

    DEFF Research Database (Denmark)

    Rebolj, Matejka; Bonde, Jesper; Preisler, Sarah

    2016-01-01

    intraepithelial neoplasia (CIN) in 2.5 years after the baseline testing were determined from the national pathology register. HPV-positive women undergoing primary screening having concordant samples were more likely to harbor high-risk infections and less likely to harbor only low-risk infections than women......Laboratories can nowadays choose from >100 Human Papillomavirus (HPV) assays for cervical screening. Our previous analysis based on the data from the Danish Horizon study, however, showed that four widely used assays, Hybrid Capture 2 (HC2), cobas, CLART and APTIMA, frequently do not detect...... the same HPV infections. Here, we determined the characteristics of the concordant (all four assays returning a positive HPV test result) and discordant samples (all other HPV-positive samples) in primary cervical screening at 30-65 years (n=2859) and in a concurrent referral population from the same...

  2. PERANGKAT PEMBELAJARAN MATEMATIKA KONSTRUKTIVIS BERBASIS NILAI-NILAI KARAKTER 1 KONSERVASI BERBANTUAN E-LEARNING

    Directory of Open Access Journals (Sweden)

    Amidi Amidi

    2016-12-01

    Full Text Available Peningkatkan penguasaan konsep dan memperbaiki sikap belajar mahasiswa dengan menerapkan pembelajaran konstruktivis berbasis nilai-nilai karakter konservasi berbantuan E-learningi adalah fokus dalam penelitian ini, sebab pembelajaran E-learning dapat menyentuh aspek aktivitas dan kreativitas mahasiswa. Pengembangan yang dipilih adalah pengembangan dengan model 4D yang diadaptasi menjadi 4P, yaitu pendefinisian (analisis awal-akhir, analisis peserta didik, analisis materi, analisis tugas, dan merumuskan tujuan pembelajaran khusus, perancangan (penyusunan kriteria tes, pemilihan media, pemilihan format, dan desain awal, pengembangan (validasi ahli dan uji coba, dan penyebaran. Adapun perangkat yang dikembangkan adalah Rencana Pembelajaran Semester (RPS dan Rancangan Tatap Muka (RTM, yang dilengkapi dengan Lembar Diskusi dan E-learning. Adapun rata-rata prestasi belajar kelas eksperimen adalah 89,38 yang melebihi batas minimal nilai B, sehingga ratarata prestasi belajar kelas eksperimen lebih baik dari kelas kontrol yang rata-rata prestasi belajarnya adalah 80,50. Sehingga dapat disimpulkan pembelajaran efektif.

  3. Efficacy of combined hepatitis B immunoglobulin and hepatitis B vaccine in blocking father-infant transmission of hepatitis B viral infection.

    Science.gov (United States)

    Cao, L-H; Liu, Z-M; Zhao, P-L; Sun, S-C; Xu, D-B; Shao, M-H; Zhang, J-D

    2015-05-04

    The aim of this study was to examine the efficacy of combined immunization of hepatitis B immunoglobulin (HBIG) and hepatitis B vaccine (HBVac) in blocking father-infant transmission of hepatitis B virus (HBV). Newborns positive at birth for blood HBV sur-face antigen (HBsAg) and/or HBV DNA were selected and immunized with HBIG combination HBVac. At 7 months, HBV markers and HBV DNA of each neonate were measured using electrochemiluminescence with the Cobas-e-411 Automatic Electrochemiluminescence Immuno-assay Analyzer and fluorescence quantitative polymerase chain reaction. Among all 7-month-old subjects, the negative conversion rates of HBV DNA and HBsAg were 48/61 (78.7%) and 19/41 (46.3%), respectively. Therefore, this study demonstrated that prompt combination injection of HBIG and HBVac can protect some of the HBV DNA- and/ or HBsAg-positive newborns from HBV.

  4. PENGEMBANGAN PERANGKAT PEMBELAJARAN MATERI PECAHAN BERBASIS TEORI BRUNER DI KELAS IV SD LABSCHOOL UNESA

    Directory of Open Access Journals (Sweden)

    Lina Wijayanti

    2015-07-01

    Full Text Available Penelitian ini bertujuan untuk menghasilkan perangkat pembelajaran pada materi pecahan tema 3 berbasis teori Bruner ditinjau dari kualitas produk secara umum (kevalidan, kepraktisan, dan keefektifan dan dalam peningkatan kemampuan pemecahan masalah dan prestasi belajar peserta didik di kelas IV SD Labschool Unesa. Penelitian ini termasuk penelitian dan pengembangan yang menggunakan model yang dikembangkan oleh Borg & Gall. Subjek penelitian dalam uji coba terbatas berjumlah 4 siswa, sedangkan dalam uji coba lapangan berjumlah 8 siswa. Subjek uji coba produk operasional pada kelas eksperimen sebanyak 17 siswa dan kelas kontrol sebanyak 18 siswa. Pengumpulan data dalam penelitian ini menggunakan lembar penilaian produk perangkat pembelajaran, lembar observasi guru, lembar observasi peserta didik, tes hasil belajar, angket respon guru, dan agket respon peserta didik. Analisis data menggunakan independent sample t-test dengan taraf signifikansi 0,05. Hasil penelitian menunjukkan bahwa perangkat pembelajaran hasil pengembangan dinyatakan valid dengan kategori sebagai berikut: silabus berkategori baik, RPP berkategori sangat baik, tes hasil belajar berkategori baik, dan media berkategori sangat baik, sehingga rerata hasil semua perangkat pembelajaran adalah berkategori baik. Penerapan perangkat pembelajaran secara umum dapat terlaksana dengan baik. Berdasarkan hasil uji coba kelas eksperimen dan kelas kontrol, terdapat perbedaan yang signifikan pada ketercapaian hasil belajar sehingga perangkat pembelajaran dikatakan efektif, sedangkan untuk kemampuan pemecahan masalah dan prestasi belajar siswa yang mengikuti pembelajaran menggunakan perangkat pembelajaran berbasis teori Bruner hasil pengembangan mengalami peningkatan. Kata Kunci: perangkat pembelajaran, teori Bruner, kemampuan pemecahan masalah, prestasi belajar DEVELOPING TEACHING KIT BASED ON THE THEORY OF BRUNER IN GRADE FOUR STUDENTS OF SD LABSCHOOL UNESA Abstract This study aims to develop a

  5. Point of care testing of fecal calprotectin as a substitute for routine laboratory analysis

    DEFF Research Database (Denmark)

    Hejl, Julie; Theede, Klaus; Møllgren, Brian

    2018-01-01

    Objectives Fecal calprotectin (FC) is widely used to monitor the activity of inflammatory bowel disease (IBD) and to tailor medical treatment to disease activity. Laboratory testing of fecal samples may have a turnaround time of 1–2 weeks, whereas FC home testing allows results within hours...... and thus enables a rapid response to clinical deterioration. Design and methods Fifty-five stool samples were analyzed by the IBDoc® Calprotectin Home Testing kit and the BÜHLMANN fCAL® turbo assay on a Roche Cobas 6000 c501. The correlation between the assays was assessed using Spearman's Rho correlation...... coefficient and the intermediate imprecision of both assays was calculated. Results We found a strong correlation coefficient of 0.887 between FC measured on IBDoc® and the laboratory assay BÜHLMANN fCAL® turbo. The coefficients of variation (CVs) at three different FC levels were in the range 2...

  6. Pemanfaatan Web E-Commerce untuk Meningkatkan Strategi Pemasaran

    Directory of Open Access Journals (Sweden)

    Hani Atun Mumtahana

    2017-06-01

    Full Text Available UMKM merupakan salah satu usaha Mikoro yang memberdayakan Industri Rumahan. UMKM Indonesia meemiliki kontribusi sebersar 15.8% terhadap rantai pasok produksi global di tingkat Asean. Perkembangan UMKM dari tahun ke tahun dipengaruhi dengan pemanfaatan Teknologi Informasi dan Sistem Informasi. E-commerce merupakan salah satu teknologi yang mendukung perkembangan UMKM dan perdagangan saat ini. Penelitian ini bertujuan untuk mengetahui dampak yang pemanfaatan Teknologi E-Commerce dalam peningkatan strategi pemasaran produksi. Teknologi E-commerce dibangun dengan mengunakan aplikasi berbasis webside, sehingga para pelaku usaha dapat mempromosikan hasil usaha dengan mudah. Sasaran utama pemanfaatan Teknolohi E-commerce ini adalah UMKM Industri Kerajinan Kulit di  Magetan. Dari hasil uji coba dan evaluasi yang dilakukan pada Koperasi Mahasiswa STT Dharma Iswara Madiun, menunjukkan bahwa dengan memanfaatkan Teknologi E-commerce memenuhi strategi pemasaran produk yang dapat berdampak pada peningkatan pendapatan.

  7. FUZZY LOGIC STATIC SYNCHRONOUS COMPENSATOR (FLSTATCOM

    Directory of Open Access Journals (Sweden)

    I Made Mataram

    2016-06-01

    Full Text Available Penerapan teknik fuzzy membawa perubahan yang signifikan khusus pada perhitungan dan analisis sistem konvensional. Peranan peralatan FACTS (Flexible AC Transmission System untuk memperbaiki kualitas tegangan dari pembangkit menuju beban sangat besar. STATCOM merupakan peralatan paling berpengaruh untuk memperbaiki tegangan pada jaringan transmisi tenaga listrik. Pembahasan pada penelitian ini dikhususkan pada FLSTATCOM. Model Fuzzy Logic dengan dua input digunakan sebagai pengontrol IGBT, sehingga mampu meningkatkan unjuk kerja STATCOM konvensional. Sistem Single Machine Infinite Bus menjadi sistem uji coba penggunaan FLSTATCOM.Hasil simulasi menggunakan simulink MATLAB, diperoleh nilai tegangan pada tiap sisi terima tanpa menggunakan STATCOM menghasilkan tegangan sebesar 217,3 kV, menggunakan STATCOM menghasilkan tegangan sebesar 220 kV, dan penggunaan FLSTATCOM mampu meningkatkan tegangan menjadi 228,9 kV (5,34%

  8. Penggunaan QR Code untuk Menunjukkan Posisi dan Implementasi Algoritma Dijkstra dalam Pencarian Rute Terpendek pada Navigasi dalam Ruangan Berbasis Sistem Operasi Android

    Directory of Open Access Journals (Sweden)

    Prasetyo Prasetyo

    2017-01-01

    Full Text Available GPS memiliki kelemahan dalam menentukan posisi pengguna ketika berada di sebuah gedung bertingkat. Oleh karena itu, dikembangkan sebuah sistem yang  lebih akurat untuk navigasi dalam gedung bertingkat yang dikembangkan dengan konsep 3D Indoor Localization. Dengan menggunakan QR Code untuk menentukan posisi pengguna dalam suatu gedung bertingkat dan penggunaan algoritma Dijkstra dalam mencari rute terpendek ke suatu tujuan, maka sistem ini menyediakan sebuah layanan navigasi dalam ruangan yang lebih baik dari penggunaan GPS. Untuk mengetahui posisinya, pengguna hanya perlu melakukan pemindaian terhadap QR Code yang terdapat pada sebuah ruang. Pengguna selanjutnya dapat memilih lokasi tujuan yang dikehendaki, dan sistem akan mencari rute yang dapat ditempuh untuk sampai ke tujuan dengan jarak terpendek. Uji coba dilakukan menggunakan peta 3D dari gedung Teknik Informatika ITS. Hasil yang diperoleh menunjukkan bahwa sistem dapat melakukan semua prosesnya dengan baik, dimulai dari proses pemindaian hingga proses penunjukan rute ke tujuan. 

  9. AIRSAR South American deployment: Operation plan, version 3.0

    Science.gov (United States)

    Kobrick, M.

    1993-01-01

    The United States National Aeronautics and Space Administration (NASA) and the Brazilian Commission for Space Activities (COBAE) are undertaking a joint experiment involving NASA's DC-8 research aircraft and the Airborne Synthetic Aperture Radar (AIRSAR) system during late May and June 1993. The research areas motivating these activities are: (1) fundamental research in the role of soils, vegetation, and hydrology in the global carbon cycle; and (2) in cooperation with South American scientists, airborne remote sensing research for the upcoming NASA Spaceborne Imaging Radar (SIR)-C/X-SAR flights on the Space Shuttle. A flight schedule and plans for the deployment that were developed are included. Maps of the site locations and schematic indications of flight routes and dates, plots showing swath locations derived from the flight requests and generated by flight planning software, and, most importantly, a calendar showing which sites will be imaged each day are included.

  10. Blood glucose, lactate, pyruvate, glycerol, 3-hydroxybutyrate and acetoacetate measurements in man using a centrifugal analyser with a fluorimetric attachment.

    Science.gov (United States)

    Harrison, J; Hodson, A W; Skillen, A W; Stappenbeck, R; Agius, L; Alberti, K G

    1988-03-01

    Methods are described for the analysis of glucose, lactate, pyruvate, alanine, glycerol, 3-hydroxybutyrate and acetoacetate in perchloric acid extracts of human blood, using the Cobas Bio centrifugal analyser fitted with a fluorimetric attachment. Intra-assay and inter-assay coefficients of variation ranged from 1.9 to 7.9% and from 1.0 to 7.2% respectively. Correlation coefficients ranged from 0.96 to 0.99 against established continuous-flow and manual spectrophotometric methods. All seven metabolites can be measured using a single perchloric acid extract of 20 microliter of blood. The versatility of the assays is such that as little as 100 pmol pyruvate, 3-hydroxybutyrate or as much as 15 nmol glucose can be measured in the same 20 microliter extract.

  11. Optimized methods to measure acetoacetate, 3-hydroxybutyrate, glycerol, alanine, pyruvate, lactate and glucose in human blood using a centrifugal analyser with a fluorimetric attachment.

    Science.gov (United States)

    Stappenbeck, R; Hodson, A W; Skillen, A W; Agius, L; Alberti, K G

    1990-01-01

    Optimized methods are described for the analysis of glucose, lactate, pyruvate, alanine, glycerol, D-3-hydroxybutyrate and acetoacetate in perchloric acid extracts of human blood using the Cobas Bio centrifugal analyser. Glucose and lactate are measured using the photometric mode and other metabolites using the fluorimetric mode. The intra-assay coefficients of variation ranged from 0.7 to 4.1%, except with very low levels of pyruvate and acetoacetate where the coefficients of variation were 7.1 and 12% respectively. All seven metabolites can be measured in a perchloric acid extract of 20 mul of blood. The methods have been optimized with regard to variation in the perchloric acid content of the samples. These variations arise from the method of sample preparation used to minimize changes occurring in metabolite concentration after venepuncture.

  12. Deteksi Non-RTH(Ruang Terbuka Hijau Kota Malang Berbasis Citra Google Earth Dengan Menggunakan Naïve Bayes Classifier

    Directory of Open Access Journals (Sweden)

    Irwan Budi Santoso

    2016-01-01

    Full Text Available Banjir, polusi udara dan naiknya temperatur udara di perkotaan, dewasa ini semakin marak persoalan tersebut tidak lain bersumber dari aktifitas manusia yang tidak terkendali sehingga mengakibatkan kerusakan. Salah satu upaya yang bisa dilakukan untuk membantu menyelesaikan persoalan tersebut adalah adanya fasilitas yang dapat memantau kondisi lingkungan secara riil berupa non-Ruang Terbuka Hijau (non-RTH, melalui komputer. Penyediaan fasilitas tersebut sangatlah mungkin dilakukan dengan memanfaatkan foto satelit seperti yang disediakan oleh Google Earth. Studi kasus dalam penelitian ini adalah kota Malang, dengan metode yang digunakan untuk mendeteksi objek non-RTH dipermukaan bumi kota Malang berdasarkan image atau citra satelit adalah Naïve Bayes Classifier (NBC.Hasil uji coba dengan menggunakan sampel pengujian, menunjukkan tingkat akurasi metode tersebut dalam mendeteksi objek non-RTH kota Malang adalah 81%.

  13. MODEL PENGENALAN PERMAINAN DALAM PEMBELAJARAN LOMPAT JAUH PADA SISWA KELAS ATAS SEKOLAH DASAR

    Directory of Open Access Journals (Sweden)

    Kurnia Azis Setyawan

    2015-10-01

    Full Text Available Penelitian ini bertujuan untuk menghasilkan model pengenalan pembelajaran lompat jauh pada siswa sekolah dasar (SD kelas atas tahun pelajaran 2013/2014 di Kecamatan Srumbung, Kabupaten Magelang. Model pembelajaran yang dikembangkan diharapkan untuk digunakan guru SD sebagai salah satu bentuk pembelajaran lompat jauh yang baik dan efektif. Penelitian pengembangan ini dilakukan dengan mengadaptasi langkah-langkah penelitian pengembangan sebagai berikut: (1 pengumpulan informasi di lapangan, (2 melakukan analisis terhadap informasi yang telah dikumpul-kan, (3 mengembangkan produk awal (draf model, (4 validasi ahli dan revisi, (5 uji coba lapangan skala kecil dan revisi, (6 uji coba lapangan skala besar dan revisi, dan (7 pembuatan produk final. Uji coba skala kecil dilakukan terhadap siswa kelas 5 SD N Tegalrandu dan SD N Polengan, Kecamatan Srumbung yang berjumlah 31 siswa. Uji coba skala besar dilakukan terhadap siswa kelas 5 SD N Tegalrandu, SD N Polengan, SD N Pucanganom, SD N Pandanretno, SD N Soka 1 yang berjumlah 81 siswa. Instrumen pengumpulan data yang digunakan yaitu; (1 pedoman wawancara, (2 skala nilai, (3 pedoman observasi model pembelajaran, (4 pedoman observasi keefektifan model pembelajaran. Teknik analisis data yang dilakukan yaitu analisis deskriptif kuantitatif dan analisis deskriptif kualitatif. Hasil penelitian ini berupa buku dan video model pengenalan dalam pembelajaran lompat jauh pada SD kelas atas. Berdasarkan penilaian ahli materi cabang olahraga atletik dan guru penjasor-kes, produk model pengenalan dalam pembelajaran lompat jauh pada SD kelas atas, sudah sesuai dan layak untuk digunakan oleh guru penjasorkes dalam mengajarkan materi lompat jauh kepada siswanya dengan nilai rata-rata 98,1%. Kata kunci: pengembangan, permainan, model pengenalan pembelajaran lompat jauh   INTRODUCTION MODELS IN LEARNING GAMES OF LONG JUMP IN UPPER CLASS ELEMENTARY SCHOOL Abstract This study aims to produce introduction models of the

  14. Peraga Mikrometer Sekrup Braille untuk Siswa Tunanetra

    Directory of Open Access Journals (Sweden)

    Fithri Iradaty

    2017-06-01

    Full Text Available This research was conducted with Four D Models research design with a limited test involving three blind students at MAN Maguwoharjo, a physics teacher ath the school, and several students majoring in physics education FMIPA UNY. The result of the limited test shows that the props that have been developed can be applied as a screw micrometre model and the Braille-labeled LKS can also be used as a guide in a practicum implementation. The results of the assessment of the feasibility of the developed product are reviewed regarding several aspects which are the requirements of the measuring instrument that is validity (reliable, reliable, can be used internationally, is easy to produce, and safe. In general, Braille scarp micrometre displays are suitable for blind students. Besides, blind students strongly support the existence of braille screw micrometre displays equipped with this braille LKS as it will help them more easily understand micrometre screw gauges which in general this tool is still produced only for the non-blind. [Penelitian ini menggunakan desain Four D Models, dengan uji coba terbatas melibatkan tiga orang siswa tunanetra MAN Maguwoharjo, seorang guru fisika MAN Maguwoharjo, dan beberapa mahasiswa Jurusan Pendidikan Fisika FMIPA UNY. Hasil uji coba terbatas menunjukkan bahwa produk peraga yang telah dikembangkan dapat diterapkan sebagai peraga mikrometer sekrup dan LKS berhuruf Braille juga dapat dimanfaatkan sebagai pedoman dalam pelaksanaan praktikum. Hasil penilaian kelayakan produk peraga yang dikembangkan ditinjau dari beberapa aspek yang menjadi syarat alat ukur, yaitu valid (dapat dipercaya, reliable, dapat digunakan secara internasional, mudah diproduksi, dan aman. Secara umum, peraga mikrometer sekrup Braille layak digunakan bagi siswa tunanetra. Selain itu siswa tunanetra sangat mendukung keberadaan peraga mikrometer sekrup braille yang dilengkapi dengan LKS braille ini karena akan membantu mereka lebih mudah memahami

  15. The New Aptima HBV Quant Real-Time TMA Assay Accurately Quantifies Hepatitis B Virus DNA from Genotypes A to F.

    Science.gov (United States)

    Chevaliez, Stéphane; Dauvillier, Claude; Dubernet, Fabienne; Poveda, Jean-Dominique; Laperche, Syria; Hézode, Christophe; Pawlotsky, Jean-Michel

    2017-04-01

    Sensitive and accurate hepatitis B virus (HBV) DNA detection and quantification are essential to diagnose HBV infection, establish the prognosis of HBV-related liver disease, and guide the decision to treat and monitor the virological response to antiviral treatment and the emergence of resistance. Currently available HBV DNA platforms and assays are generally designed for batching multiple specimens within an individual run and require at least one full day of work to complete the analyses. The aim of this study was to evaluate the ability of the newly developed, fully automated, one-step Aptima HBV Quant assay to accurately detect and quantify HBV DNA in a large series of patients infected with different HBV genotypes. The limit of detection of the assay was estimated to be 4.5 IU/ml. The specificity of the assay was 100%. Intra-assay and interassay coefficients of variation ranged from 0.29% to 5.07% and 4.90% to 6.85%, respectively. HBV DNA levels from patients infected with HBV genotypes A to F measured with the Aptima HBV Quant assay strongly correlated with those measured by two commercial real-time PCR comparators (Cobas AmpliPrep/Cobas TaqMan HBV test, version 2.0, and Abbott RealTi m e HBV test). In conclusion, the Aptima HBV Quant assay is sensitive, specific, and reproducible and accurately quantifies HBV DNA in plasma samples from patients with chronic HBV infections of all genotypes, including patients on antiviral treatment with nucleoside or nucleotide analogues. The Aptima HBV Quant assay can thus confidently be used to detect and quantify HBV DNA in both clinical trials with new anti-HBV drugs and clinical practice. Copyright © 2017 American Society for Microbiology.

  16. TENDENCY OF PLAYERS IS TRIAL AND ERROR: CASE STUDY OF COGNITIVE CLASSIFICATION IN THE COGNITIVE SKILL GAMES

    Directory of Open Access Journals (Sweden)

    Moh. Aries Syufagi

    2012-07-01

    adalah coba-coba. Beberapa dari mereka memiliki kategori Ahli, dan sedikit yang termasuk dalam kelompok hati-hati. Dengan demikian, secara umum kemampuan pemain masih rendah.

  17. Comparison of Hemoglobin A1c assay performance on two different commercial systems

    Directory of Open Access Journals (Sweden)

    Jozo Ćorić

    2015-04-01

    Full Text Available Introduction: Glycated hemoglobin (HbA1c is formed by non-enzymatic binding of glucose to the free amino group of the N-terminal end of the ß-chain of hemoglobin A. HbA1c is representative of the mean blood glucose level over three months. The aim of the study was to evaluate the Hemoglobin A1c immunoturbidimetric assay performance on two different commercial systems.Methods: We evaluated the precision and trueness for determination of HbA1c in whole blood. Concentrations of total hemoglobin and HbA1c were evaluated on Dimension Xpand (Siemens and Cobas 501 (Roche analyzers. HbA1c was measured in a latex agglutination inhibition test. Commercial controls Liquichek Diabetes Control Level 1 and Liquichek Diabetes Control Level 2 (Bio Rad at two levels were used for quality control. Analytical validation of HbA1c included: within-run imprecision, between-day imprecision, inaccuracy and comparison determination on the human samples on 2 systems: Dimension Xpand and Cobas 501 analyzers. Results: Within-run imprecision on the commercially controls for Level 1 is 4.5% and Level 2 is 3.2% between-day imprecision on commercially controls is 6.1% Level 1 and 5.1% Level 2 for respectively inac- curacy on commercially controls for Level 1 is 1.8% and Level 2 is 4.8%. Method comparison on human samples shows the correlation coefficient of 0.99.Conclusion: The presented results of the analytical evaluation methods for the determination of HbA1c showed an acceptable accuracy and precision.

  18. The evaluation of Recombinant Immunoblot assay (RIBA and HCV-RNA test results in patients with low titer Anti-HCV positivity

    Directory of Open Access Journals (Sweden)

    Berrin Uzun

    2014-12-01

    Full Text Available Objectives: Laboratory diagnosis of hepatitis C virus (HCV infection is based on the detection of anti-HCV antibodies by enzyme immunoassay (EIA or chemiluminescence immunoassay (CIA techniques. However, a consensus related to the problem of low titer (Serum/Cut-off; S/C= 1.0 anti-HCV antibodies is still lacking. The study attempts to evaluate the clinical status of the patients with low titer anti-HCV antibodies detected by third generation anti-HCV tests during February 2013- May 2014 retrospectively. Methods: Serum samples were studied by Advia Centaur XP autoanalyser (Bayer-Siemens, Germany for anti-HCV, and line immunoassay (Inno-LIATM HCV Score, İnnogenetics, Belgium for anti-HCV confirmatory test, Cobas AmpliPre/Cobas AMPLICOR HCV Test (Roche diagnostics, Switzerland for HCV RNA. Results: A total of 55.631 serum samples were studied, and 55 of them were anti-HCV positive of which with low antibody levels (sample/cutoff [S/CO]. S/CO values ranged from 1.15 to 6.15. Seventeen (31% of patients who have low antibody levels were defined as positive and 2 (4% patients were intermittent and 36 (65% patients were negative with line immunoassay. HCV-RNA was not detected in any of the samples. Conclusions: It is thought that antibody positivity must be verified in cases of recurrent reactivity when considering the cost-effectiveness of molecular tests. In the study was concluded that the use of molecular tests would be appropriate diagnosis, and the effectiveness of treatment if necessary after evaluation of patients with biochemical analysis. J Clin Exp Invest 2014; 5 (4: 553-556

  19. Effects of common hemoglobin variants on HbA1c measurements in China: results for α- and β-globin variants measured by six methods.

    Science.gov (United States)

    Xu, Anping; Chen, Weidong; Xia, Yong; Zhou, Yu; Ji, Ling

    2018-04-07

    HbA1c is a widely used biomarker for diabetes mellitus management. Here, we evaluated the accuracy of six methods for determining HbA1c values in Chinese patients with common α- and β-globin chains variants in China. Blood samples from normal subjects and individuals exhibiting hemoglobin variants were analyzed for HbA1c, using Sebia Capillarys 2 Flex Piercing (C2FP), Bio-Rad Variant II Turbo 2.0, Tosoh HLC-723 G8 (ver. 5.24), Arkray ADAMS A1c HA-8180V fast mode, Cobas c501 and Trinity Ultra2 systems. DNA sequencing revealed five common β-globin chain variants and three common α-globin chain variants. The most common variant was Hb E, followed by Hb New York, Hb J-Bangkok, Hb G-Coushatta, Hb Q-Thailand, Hb G-Honolulu, Hb Ube-2 and Hb G-Taipei. Variant II Turbo 2.0, Ultra2 and Cobas c501 showed good agreement with C2FP for most samples with variants. HLC-723 G8 yielded no HbA1c values for Hb J-Bangkok, Hb Q-Thailand and Hb G-Honolulu. Samples with Hb E, Hb G-Coushatta, Hb G-Taipei and Hb Ube-2 produced significant negative biases for HLC-723 G8. HA-8180V showed statistically significant differences for Hb E, Hb G-Coushatta, Hb G-Taipei, Hb Q-Thailand and Hb G-Honolulu. HA-8180V yielded no HbA1c values for Hb J-Bangkok. All methods showed good agreement for samples with Hb New York. Some common hemoglobin variants can interfere with HbA1c determination by the most popular methods in China.

  20. Pengembangan Media Ice Breaker Talking Pen pada Mata Pelajaran PAI Kelas X SMAN 100 Jakarta

    Directory of Open Access Journals (Sweden)

    Ati Sulastri

    2017-07-01

    Full Text Available This study aims to find out how to develop media ice breaker talking pen and media feasibility on the subjects of PAI. The research method used is Borg and Gall development model which includes requirement analysis, validation test, and test phase. The result of this development research is ice breaker talking pen media product which consists of command card and music developed through data collection, planning, product development, and validation and testing. Based on the validation results obtained the average score of the material experts of 4.75 (very good, and from the media experts of 3.78 (good, and the results of student responses about this media amounted to 4.39 or very good category. Therefore the ice breaker talking media on the eyes of learning PAI class X is declared eligible for use with very good category. Keywords: Development Model  Study, Ice Breaker Talking Pen, PAI Abstrak Penelitian ini bertujuan untuk mengetahui cara mengembangkan media ice breaker talking pen dan kelayakan media tersebut pada mata pelajaran PAI. Metode yang digunakan adalah model pengembangan Borg dan Gall yang meliputi analisis kebutuhan, tahap validasi dan tahap uji coba. Hasil penelitian pengembangan ini adalah produk media ice breaker talking pen yang terdiri dari kartu perintah dan musik yang dikembangkan melalui tahap pengumpulan data, perencanaan, pengembangan produk, serta validasi dan uji coba. Berdasarkan pada hasil validasi didapat skor rata-rata dari ahli materi sebesar 4,75 (sangat baik, dan dari ahli media sebesar 3,78 (baik. Serta hasil dari tanggapan siswa mengenai media ini sebesar 4,39 atau kategori sangat baik. Maka dari itu media ice breaker talking pen pada mata pelajaran PAI kelas X dinyatakan layak untuk digunakan dengan kategori sangat baik. Kata Kunci : Pengembangan Model Pembelajaran, Ice Breaker Talking Pen, PAI

  1. SIKLUS PRAPEMBELAJARAN MODEL PENILAIAN FORMATIF WEB-BASED PADA PEMBELAJARAN FISIKA MATERI SUHU DAN KALOR UNTUK SISWA SMK KELAS X

    Directory of Open Access Journals (Sweden)

    E. Ediyanto

    2016-10-01

    Full Text Available Model penilaian formatif Web-based dibagi menjadi tiga siklus yaitu siklus prapembelajaran, siklus pembelajaran dan siklus pascapembelajaran. Penelitian kali ini mengembangkan siklus prapembelajaran model penilaian web-based pada mata pelajaran fisika materi suhu dan kalor untuk siswa SMK kelas X. Metode penelitian yang digunakan dalam penelitian ini adalah penelitian dan pengembangan. Langkah-langkah yang digunakan untuk pengembangan siklus prapembelajaran model penilaian formatif web-based yaitu 1 mengumpulkan informasi, 2 melakukan perencanaan, 3 mengembangkan bentuk produk awal, 4 melakukan uji permulaan, 5 revisi, dan 6 Uji coba. Berdasarkan hasil uji coba, ditemukan bahwa siklus prapembelajaran model penilaian formatif web-based dapat membantu guru dan siswa untuk mendapatkan umpan balik yang cepat. Umpan balik yang cepat dapat membantu siswa untuk mendapatkan pemahaman konsep dengan cepat dan dapat membantu guru untuk menemukan masalah siswa sehingga dapat dipecahkan dengan cepat.Web-based Formative Assessment Model is divided into three cycles: pre-teaching, whilst teaching, post-teaching. This research develops Pre-teaching Cycle of Formative Web-Based Assessment Model on physics material teaching: Temperature and Heat for X Grader of Vocational High School Students. The method used in this research is a Research and Development (R & D. The steps used for the development of pre-learning cycle of web-based formative assessment models: 1 collecting information, 2 conducting planning, 3 developing pre-product form, 4 conducting pre-test, 5 revision, 6 trial test. Based on the trial test, the findings show that pre-teaching cycle of formative web-based assessment model is able to assist teachers and students to get fast feedback. Fast feedback can helps students to gain fast conceptual comprehension and help teachers to find out the students’ problems so it enables to solve faster.

  2. EKSPERIMENTASI MODEL PEMBELAJARAN KOOPERATIF TIPE THINK PAIR SHARE (TPS DITINJAU DARI KEMANDIRIAN BELAJAR SISWA KELAS VIII SMP NEGERI DI KOTA YOGYAKARTA

    Directory of Open Access Journals (Sweden)

    Annis Deshinta Ayuningtyas

    2015-02-01

    Full Text Available Tujuan penelitian ini yaitu untuk mengetahui: (1 manakah yang memberikan prestasi belajar lebih baik diantara model pembelajaran kooperatif tipe TPSatau pembelajaran langsung, (2 manakah yang mempunyai prestasi belajar lebih baik di antara siswa yang mempunyai kemandirian belajar tinggi, sedang, atau rendah, (3 pada masing-masing tingkatan kemandirian belajar (tinggi, sedang, dan rendah, manakah yang memberikan prestasi belajar lebih baik antara model pembelajaran kooperatif tipe TPS atau pembelajaran langsung. Penelitian ini termasuk penelitian eksperimental semu dengan desain factorial 2x3. Populasi dalam penelitian ini adalah seluruh siswa kelas VIII Sekolah Menengah Pertama (SMP Negeri Se-Kota Yogyakarta Semester I tahun pelajaran 2011/2012. Teknik pengambilan sampel dilakukan dengan carastratified cluster random sampling. Banyak sampel adalah 195 siswa. Instrumen yang digunakan untuk mengumpulkan data adalah angket kemandirian belajar siswa dan tes prestasi belajar matematika. Uji coba angket meliputi validitas isi, konsistensi internal dan reliabilitas. Uji coba tes prestasi meliputi validitas isi, tingkat kesukaran, daya beda dan reliabilitas. Untuk uji normalitas menggunakan uji Lilliefors, uji homogenitas menggunakan uji barlett. Uji keseimbangan yang digunakan yaitu anava satu jalan dengan sel tak sama. Analisis tes prestasi matematika menggunakan analisis variansi dua jalan dengan sel tak sama. Dari hasil analisis diperoleh kesimpulan bahwa: (1 Prestasi belajar matematika dengan model pembelajaran kooperatiftipe TPS memberikan prestasi belajar yang lebih baik daripada model pembelajaran langsung, (2 Siswa yang kemandirian belajarnya tinggi mempunyai prestasi belajar yang lebih baik daripada siswa dengan kemandirian belajar sedang dan rendah, sedangkan siswa yang kemandirian belajarnya sedang mempunyai prestasi belajar yang sama dengan siswa dengan kemandirian belajar rendah, (3 Pada siswa yang mempunyai kemandirian belajar tinggi

  3. [Comparison of manual and automated (MagNA Pure) nucleic acid isolation methods in molecular diagnosis of HIV infections].

    Science.gov (United States)

    Alp, Alpaslan; Us, Dürdal; Hasçelik, Gülşen

    2004-01-01

    Rapid quantitative molecular methods are very important for the diagnosis of human immunodeficiency virus (HIV) infections, assessment of prognosis and follow up. The purpose of this study was to compare and evaluate the performances of conventional manual extraction method and automated MagNA Pure system, for the nucleic acid isolation step which is the first and most important step in molecular diagnosis of HIV infections. Plasma samples of 35 patients in which anti-HIV antibodies were found as positive by microparticule enzyme immunoassay and confirmed by immunoblotting method, were included in the study. The nucleic acids obtained simultaneously by manual isolation kit (Cobas Amplicor, HIV-1 Monitor Test, version 1.5, Roche Diagnostics) and automated system (MagNA Pure LC Total Nucleic Acid Isolation Kit, Roche Diagnostics), were amplified and detected in Cobas Amplicor (Roche Diagnostics) instrument. Twenty three of 35 samples (65.7%) were found to be positive, and 9 (25.7%) were negative by both of the methods. The agreement between the methods were detected as 91.4%, for qualitative results. Viral RNA copies detected by manual and MagNA Pure isolation methods were found between 76.0-7.590.000 (mean: 487.143) and 113.0-20.300.0000 (mean: 2.174.097) copies/ml, respectively. When both of the overall and individual results were evaluated, the number of RNA copies obtained with automatized system, were found higher than the manual method (p<0.05). Three samples which had low numbers of nucleic acids (113, 773, 857, respectively) with MagNA Pure, yielded negative results with manual method. In conclusion, the automatized MagNA Pure system was found to be a reliable, rapid and practical method for the isolation of HIV-RNA.

  4. Mengungkap Model Pendidikan Hindu Bali Tradisional Aguron-guron

    Directory of Open Access Journals (Sweden)

    Wayan Paramartha

    2017-06-01

    Full Text Available Pendidikan aguron-guron dikembangkan atas dua sub model. Model pertama dikembangkan dengan ideologi sakala ‘realis’ dengan tujuan Parartha ‘kesejahtraan’, yaitu agawe suka nikang rat ‘menjadikan siswa berkarakter dan dapat bekerja untuk kebahagiaan bersama di dunia (baca desa pakraman’. Sedangkan yang kedua adalah ideologi  niskala ‘idealis’ dengan tujuan paramartha, yaitu matutur ikang atma ri jatinya ‘menjadikan siswa sadar akan jati dirinya, bahwa ia sesungguhnya adalah roh’ atau sinar Ilahi. Model pendidikan aguron-guron merupakan kearifan lokal yang menjungjung tinggi nilai-nilai keseimbangan dan harmonisasi. Oleh karena itu terus diperhatikan dan dikembangkan untuk memelihara karakter bangsa, membangun landasan teori pendidikan dan pembelajaran berbasis budaya. Penelitian ini merupakan tahun ke dua, yang bertujuan menghasilkan bahan ajar dan VCD sebagai media pendukung pembelajaran model pendidikan Hindu Bali tradisional aguron-guron serta menguji efektivitas bahan ajar dan media VCD model pendidikan Hindu Bali tradisional aguron-guron tersebut. Penelitian dilaksanakan di Pasraman Seruling Dewata Tabanan dan  Pasraman  Griya  Kekeran  Blahbatuh  Gianyar. Metode pengumpulan data digunakan wawancara, studi kepustakaan, dokumentasi dan angket penilaian bahan ajar dan VCD. Data dianalisis dengan menggunakan analisis deskriptif kuantitatif teknik prosentase dan kualitatif. Hasil uji ahli dan uji coba pengguna perorangan serta uji coba pengguna kelompok kecil terhadap produk yang dikembangkan berupa bahan ajar dan VCD mencakup materi Ilmu Silat Bali Kuno,Tapak Suci, Tattwa dan Nilai-Nilai Pendidikan Agama Hindu  menunjukkan sangat layak dan masuk dalam kategori tidak perlu direvisi

  5. PENGEMBANGAN TARGET NET SEBAGAI ALAT PEMBELAJARAN PUKULAN BULUTANGKIS DI SEKOLAH MENENGAH PERTAMA

    Directory of Open Access Journals (Sweden)

    Afif Khoirul Hidayat

    2015-04-01

    Full Text Available Penelitian ini bertujuan untuk mengembangkan dan menghasilkan alat target net untuk memudahkan peserta didik SMP memelajari dan meningkatkan kemampuan teknik dasar pukulan net, smash, drive, dan short serve. Dalam penelitian pengembangan ini, langkah-langkah yang harus ditempuh meliputi: (1 potensi dan masalah, (2 pengumpulan data, (3 desain produk, (4 validasi desain dan instrument, (5 revisi desain, (6 uji coba produk, (7 revisi, dan (8 produksi/implementasi produk. Uji coba penelitian dilakukan terhadap 168 peserta didik dari SMP se-Kecamatan Piyungan, Bantul, Yogyakarta. Teknik analisis data terdiri dari teknik analisis data deskriptif kuantitatif dan teknik analisis data deskriptif kualitatif. Hasil akhir dari penelitian ini adalah sebuah produk alat pembelajaran target net dan buku manual target net yang memiliki kualitas yang sangat baik. Hal tersebut dibuktikan dengan diperolehnya rerata persentase skor penilaian kualitas produk alat pembelajaran dan buku manual target net sebesar 98,66%.   DEVELOP TARGET NET AS A TOOL FOR SHOT LEARNING IN BADMINTON AT JUNIOR HIGH SCHOOL   Abstract This research aims to produce and develop target net tools in facilitating JHS students to improve the basic techniques of net shots, smashes, drives, dan short serves. This research and development study follows the steps of: (1 the potential and problems identification, (2 data collection, (3 product design, (4 the design and validation of the instrumen, (5 revision of the design, (6 product trials, (7 revision, and (8 production/implementation of the product. The trials were conducted to 168 students from JSH in Piyungan districts, Bantul, Yogyakarta. The technique of data analysis is descriptive quantitative analysis and qualitative descriptive analysis. The result of this research is a learning tool of target net product and manual book of the target product, that have a very good quality.  Which is proved by the average percentage quality assessment

  6. Evaluación electromiográfica de los músculos masticadores durante la fuerza máxima de mordedura Electromyography evaluations of the masticator muscles during the maximum bite force

    Directory of Open Access Journals (Sweden)

    M.J.P. Coelho-Ferraz

    2008-12-01

    Full Text Available La actividad de los músculos masetero y de la porción anterior temporal de ambos lados, derecho e izquierdo, respectivamente, durante la fuerza máxima de mordedura fue estudiada en voluntarios sanos. El estudio incluyó a 17 voluntarios adultos de ambos sexos, edad promedia de 25 años, que no evidenciaban ningún indicio de disfunción temporomandibular y eran relacionados con la Facultad de Odontología de Piracicaba. Se registraron los datos electromiográficos en ambos lados de la cara del masetero y de la porción anterior de los músculos temporal y suprahioideo en las posiciones postural e isométrica. Se utilizaron electrodos de superficie pasivos para niños, de Ag/AgCl, con forma circular y descargables de Meditrace® Kendall-LTP, modelo Chicopee MA01. Éstos se conectaron a un preamplificador con una ganancia de 20x que formaba un circuito de diferenciales. Se captaron los registros de las señales eléctricas utilizando un equipo EMG-8OOC de EMG System of Brazil, Ltd., de ocho canales, a una frecuencia de 2 KHz con 16 bitios de resolución y un filtro digital con un paso de banda de 20 a 500 Hz. Se utilizó también un transductor de presión que consistía en un tubo de goma con un sensor de presión (MPX 5700* (Motorola SPS, Austin, TX, EE.UU. para registrar la fuerza máxima de mordedura. El análisis estadístico incluyó la correlación lineal, la prueba t emparejada y el análisis de la varianza. Se consideró estadísticamente significativa una probabilidad de pHealthy individuals were examined in terms of the pattern of activity of the masseter and temporal muscles in their anterior portion of both right and left sides, respectively, with the maximum bite force. The study consisted in seventeen adult volunteers with no sign of apparent temporomandibular dysfunction, of both genders, connected to the School of Dentistry of Piracicaba, with average age of 25 years old. The electromyography data were obtained, bilaterally, of

  7. Comparison of monkeypox viruses pathogenesis in mice by in vivo imaging.

    Directory of Open Access Journals (Sweden)

    Jorge E Osorio

    2009-08-01

    Full Text Available Monkeypox viruses (MPXV cause human monkeypox, a zoonotic smallpox-like disease endemic to Africa, and are of worldwide public health and biodefense concern. Using viruses from the Congo (MPXV-2003-Congo-358 and West African (MPXV-2003-USA-044 clades, we constructed recombinant viruses that express the luciferase gene (MPXV-Congo/Luc+and MPXV-USA-Luc+ and compared their viral infection in mice by biophotonic imaging. BALB/c mice became infected by both MPXV clades, but they recovered and cleared the infection within 10 days post-infection (PI. However, infection in severe combined immune deficient (SCID BALB/c mice resulted in 100% lethality. Intraperitoneal (IP injection of both MPXV-Congo and MPXV-Congo/Luc+resulted in a systemic clinical disease and the same mean time-to-death at 9 (+/-0 days post-infection. Likewise, IP injection of SCID-BALB/c mice with MPXV-USA or the MPXV-USA-Luc+, resulted in similar disease but longer (P<0.05 mean time-to-death (11+/-0 days for both viruses compared to the Congo strains. Imaging studies in SCID mice showed luminescence in the abdomen within 24 hours PI with subsequent spread elsewhere. Animals infected with the MPXV-USA/Luc+had less intense luminescence in tissues than those inoculated with MPXV-Congo/Luc+, and systemic spread of the MPXV-USA/Luc+virus occurred approximately two days later than the MPXV-Congo/Luc+. The ovary was an important target for viral replication as evidenced by the high viral titers and immunohistochemistry. These studies demonstrate the suitability of a mouse model and biophotonic imaging to compare the disease progression and tissue tropism of MPX viruses.

  8. Spectral heterogeneity on Phobos and Deimos: HiRISE observations and comparisons to Mars Pathfinder results

    Science.gov (United States)

    Thomas, N.; Stelter, R.; Ivanov, A.; Bridges, N.T.; Herkenhoff, K. E.; McEwen, A.S.

    2011-01-01

    The High-Resolution Imaging Science Experiment (HiRISE) onboard Mars Reconnaissance Orbiter (MRO) has been used to observe Phobos and Deimos at spatial scales of around 6 and 20 m/px, respectively. HiRISE (McEwen et al.; JGR, 112, CiteID E05S02, DOI: 10.1029/2005JE002605, 2007) has provided, for the first time, high-resolution colour images of the surfaces of the Martian moons. When processed, by the production of colour ratio images for example, the data show considerable small-scale heterogeneity, which might be attributable to fresh impacts exposing different materials otherwise largely hidden by a homogenous regolith. The bluer material that is draped over the south-eastern rim of the largest crater on Phobos, Stickney, has been perforated by an impact to reveal redder material and must therefore be relatively thin. A fresh impact with dark crater rays has been identified. Previously identified mass-wasting features in Stickney and Limtoc craters stand out strongly in colour. The interior deposits in Stickney appear more inhomogeneous than previously suspected. Several other local colour variations are also evident. Deimos is more uniform in colour but does show some small-scale inhomogeneity. The bright streamers (Thomas et al.; Icarus, 123, 536556,1996) are relatively blue. One crater to the south-west of Voltaire and its surroundings appear quite strongly reddened with respect to the rest of the surface. The reddening of the surroundings may be the result of ejecta from this impact. The spectral gradients at optical wavelengths observed for both Phobos and Deimos are quantitatively in good agreement with those found by unresolved photometric observations made by the Imager for Mars Pathfinder (IMP; Thomas et al.; JGR, 104, 90559068, 1999). The spectral gradients of the blue and red units on Phobos bracket the results from IMP. ?? 2010 Elsevier Ltd. All rights reserved.

  9. Analysis of accuracy in photogrammetric roughness measurements

    Science.gov (United States)

    Olkowicz, Marcin; Dąbrowski, Marcin; Pluymakers, Anne

    2017-04-01

    Regarding permeability, one of the most important features of shale gas reservoirs is the effective aperture of cracks opened during hydraulic fracturing, both propped and unpropped. In a propped fracture, the aperture is controlled mostly by proppant size and its embedment, and fracture surface roughness only has a minor influence. In contrast, in an unpropped fracture aperture is controlled by the fracture roughness and the wall displacement. To measure fracture surface roughness, we have used the photogrammetric method since it is time- and cost-efficient. To estimate the accuracy of this method we compare the photogrammetric measurements with reference measurements taken with a White Light Interferometer (WLI). Our photogrammetric setup is based on high resolution 50 Mpx camera combined with a focus stacking technique. The first step for photogrammetric measurements is to determine the optimal camera positions and lighting. We compare multiple scans of one sample, taken with different settings of lighting and camera positions, with the reference WLI measurement. The second step is to perform measurements of all studied fractures with the parameters that produced the best results in the first step. To compare photogrammetric and WLI measurements we regrid both data sets onto a regular 10 μm grid and determined the best fit, followed by a calculation of the difference between the measurements. The first results of the comparison show that for 90 % of measured points the absolute vertical distance between WLI and photogrammetry is less than 10 μm, while the mean absolute vertical distance is 5 μm. This proves that our setup can be used for fracture roughness measurements in shales.

  10. Multielemental determination of trace elements in radiopharmaceuticals produced at the radiopharmacy center using ICP-OES technique

    International Nuclear Information System (INIS)

    Tavares, Angelica T.; Martins, Patricia de A.; Fukumori, Neuza T.O.; Mengatti, Jair; Matsuda, Margareth M.N.

    2013-01-01

    The control of chemical impurities in radiopharmaceuticals is critical to their safety and efficacy. According to the U.S. Pharmacopeia (USP), the elemental impurities with potential toxicity must be quantified. A proposed revision of USP 35 introduces the technique of atomic emission spectrometry for the analysis of elements. The aim of this work was to study the concentration of chemicals elements in FDG-Fluor-18, IPEN-TEC Generator and MIBI-TEC using an ICP-OES technique. One analytical curve composed by 27 elements (Ag, A1, B, Ba, Be, Bi, Ca, Cd, Co, Cr, Cu, Fe, Ga, K, Li, Mg, Mn, Mo, Na, Ni, Pb, Pd, Se, Sr, Te, T1, Zn) was constructed in two analytical ranges. The analyses were carried out simultaneously in an ICP-OES Vista MPX (Agilent). Some parameters for analysis and method validation were evaluated. The cleaning and maintenance of equipment influenced the emission intensity of the elements. 1.2 power and 10s sample uptake resulted in a consumption of 1.6 mL of sample and Mg II/Mg I ratio relation equal to 9.40. Linearity, LOD and LOQ were determined. The analysis were performed using 1:40 dilution with purified water. The main elements studied in this work were A1, Cu and Zn. The % recovery was determined with final concentrations of 0.3, 0.5 and 0.8 μg mL -1 . The analyses were performed in triplicate with three different batches. The % recovery was between 96.65 and 117.61% and the values for precision (CV) were less than 5% indicating good accuracy of the method. (author)

  11. Studies on the preparation of {sup 68}Ge-{sup 68}Ga generator with inorganic materials

    Energy Technology Data Exchange (ETDEWEB)

    Brambilla, Tania P.; Osso Junior, Joao A., E-mail: jaosso@ipen.b [Instituto de Pesquisas Energeticas e Nucleares (IPEN/CNEN-SP), Sao Paulo, SP (Brazil)

    2011-07-01

    {sup 68}Ga as a positron emitter is of great interest because of some important advantages. It has a physical half-life of 67.71 min, which is compatible with the pharmacokinetics of many radiopharmaceuticals of low molecular weight. Other important characteristic is its cyclotron-independent availability via the {sup 68}Ge-{sup 68}Ga radionuclide generator system. In Brazil only one positron emitter radionuclide is produced, {sup 18}F, and the medical class has a great interest in using {sup 68}Ga labeled molecules, in particular peptides such as DOTA-octriotide. A project for developing a home made {sup 68}Ge-{sup 68}Ga is under way at IPEN-CNEN/SP. The aim of this work is to develop an efficient and simplified generator system of {sup 68}Ge-{sup 68}Ga that offers {sup 68}Ga{sup 3+} adequate for clinical use. Initial results will be reported concerning the behavior of Ge and Ga in adsorbers such as calcined acid and basic Al{sub 2}O{sub 3}, HZO (hydrous zirconium oxide), TiO{sub 2}, microspheres of Zr (Zr mic) and microspheres of Al (Al mic). Adsorption studies were carried out using {gamma}-emitting tracers, {sup 67}Ga and {sup 68}Ga and chemical tracer, GeO{sub 2}. The samples containing {sup 67}/{sup 68}Ga were analysed using a dose calibrator CRC-15R from Capintec and the samples containing Ge were evaluated by the Optical Emission Spectrometry using Inductively Coupled Plasma (ICP-OES). The ICP-OES equipment used was a Varian Vista-MPX from Varian and calibration curves for Ge were constructed in the range of 0.2 to 1.0 {mu}g.mL{sup -1}. The use of basic Al{sub 2}O{sub 3}, TiO{sub 2}, HZO and Zr mic showed the more promising results. (author)

  12. PENGEMBANGAN MODUL PEMBELAJARAN KIMIA BERVISI SETS BERORIENTASI CHEMO-ENTREPRENEURSHIP (CEP PADA MATERI LARUTAN ASAM BASA

    Directory of Open Access Journals (Sweden)

    M. Agus Prayitno

    2016-05-01

    Full Text Available Kimia merupakan salah satu mata pelajaran yang berkaitan dengan kehidupan sehari- hari, dari segi lingkungan teknologi, maupun masyarakat. Tujuan penelitian ini adalah menghasilkan modul pembelajaran kimia bervisi SETS berorientasi CEP pada materi larutan asam basa yang layak dan efektif digunakan dalam pembelajaran untuk meningkatkan motivasi belajar, minat wirausaha, dan hasil belajar siswa. Penelitian ini merupakan penelitian pengembangan. Uji coba kelayakan produk pada penelitian ini dilaksanakan di MA Mu’allimin Mu’allimat dengan model penelitian one group pre-test and post-test design dan di MAN Rembang dengan model penelitian pre-test and post-test control group design. Data penelitian diperoleh dengan metode validasi, observasi, dokumentasi, tes, dan skala Likert. Hasil validasi ahli materi, ahli media, dan praktisi menunjukkan bahwa modul pembelajaran kimia bervisi SETS berorientasi CEP sangat layak digunakan dalam pembelajaran kimia dengan skor ratarata pada aspek kegrafikan 95,00, aspek penyajian 95,33, aspek kebahasaan 95,00, dan aspek kegrafikan 94,44. Hasil uji coba modul di MA Mu’allimin Mu’allimat menunjukkan peningkatan motivasi 20%, minat wirausaha 25%, dan hasil belajar siswa 79%. Uji coba modul di MAN Rembang peningkatan motivasi belajar siswa, minat wirausaha, dan hasil belajar siswa kelas eksperimen sebesar 27%, 17% dan 66%, sedangkan peningkatan kelas kontrol secara berturutturut 0,4%, 11%, dan 24%.Chemistryis one of the subjects related to everyday life, in terms of environmental technology, and society. The purpose of this research is to produce visionary chemistry learning modules SETS with CEP oriented on acid-base materials which properly and effectively use in learning to improve learning motivation, entrepreneurial interest, and student learning outcomes. This research is development reaserch. Testing the product viability on the research carried out in MA Mu'allimin Mu'allimat with research model are one

  13. PENGEMBANGAN INSTRUMEN PENILAIAN HOTS BERBASIS KURIKULUM 2013 TERHADAP SIKAP DISIPLIN

    Directory of Open Access Journals (Sweden)

    Umi Pratiwi

    2015-11-01

    , et al. (1974. Uji coba lapangan dilakukan di 3 (tiga sekolah yang terdiri dari 3 (tiga sekolah, dengan teknik cluster random sampling terpilih kelas X(1 sebagai kelas uji coba instrumen penilaian. Variabel HOTS sebagai variabel independendan sikap disiplin sebagai variabel dependen. Data diperoleh melaluilembar validasi, instrumen penilaian dalam bentuk RPP. Proses pengembangan instrumen  penilaian HOTS dan sikap disiplin masing-masing terdiri dari 12 indikator dengan skor maksimal 4.00 menghasilkan: Instrumen penilaian adalah valid menurut 4 (empat validator, yaitu diperoleh rata-rata nilai validitas 3,57. Instrumen penilaian dikatakan efektif/berhasil, karena mencapai kesuksesan instrumen penilaian dengan skor HOTS 73,3% dan sikap disiplin 90% dari skor total. Instrumen penilaian ini baik digunakan untuk siswa dengan keaktifan tinggi, bekerja mandiri dan kemampuan yang kurang baik dalam menyelesaikan soal-soal fisika secara sistematis.

  14. [Utilization of self-sampling kits for HPV testing in cervical cancer screening - pilot study].

    Science.gov (United States)

    Ondryášová, H; Koudeláková, V; Drábek, J; Vaněk, P; Slavkovský, R; Hajdúch, M

    2015-12-01

    To get initial experience with alternative sampling (self-sampling) for HPV testing as the means of cervical cancer screening program. Original work. Institute of Molecular and Translational Medicine, Faculty of Medicine and Dentistry, Palacky University in Olomouc. Based on expression of interest, 215 self-sampling kits were posted to women. Evalyn(®) Brush Vaginal swabs obtained by self-sampling were analyzed for the presence of HPV infection by Cobas 4800 HPV (Roche) followed by genotyping using PapilloCheck(®) HPV-Screening (Greiner Bio-One). Sixty women randomly chosen from our sample were sent a questionnaire focused on their experience with self-sampling. One hundred seventy-four of 215 (81%) distributed self-sampling devices have been delivered to analysis. All cervicovaginal swabs were sampled correctly and it was possible to analyze them by Cobas 4800 HPV test. Similarly, 98% (171/174) samples were analyzable by PapilloCheck(®) HPV-Screening.One hundred twenty-five (72%) of 174 tested samples were HPV negative. Low risk HPV infection was detected only in 7 samples (4%), and high risk HPV (hrHPV) infection was present in 42 samples (24%). The most frequently detected hrHPV genotypes were HPV16 (11/42; 26%) and HPV53 (6/42; 14%). HrHPV co-infection was detected in 10 cases, in 5 of them lrHPV infection was find also.Of the 60 questionnaires, 48 (80%) were returned. From this group, 47 (98%) women rated their experience with self-sampling device as good to excellent. User manual of self-sampling device was considered good to excellent by all women (100%). All women also rated the convenience of self-sampling device using as good to excellent. As expected, most of the women (n = 42 [88%]) preferred self-sampling to physician sampling. Cervicovaginal self-sampling leads to valid results of HPV screening using two molecular genetics methods and was accepted by Czech women very well. The self-sampling as an opportunity to participate in cervical cancer

  15. Aplikasi Promosi Perguruan Tinggi Berbasis Multimedia Interaktif

    Directory of Open Access Journals (Sweden)

    Wahyudi ,

    2017-02-01

    Full Text Available Promosi dapat digunakan untuk meningkatkan kepercayaan masyarakat kepada jaminan mutu suatu perguruan tinggi, semakin dikenalnya jaminan mutu suatu perguruan tinggi maka semakin banyak pula masyarakat pengguna jasanya. Promosi dalam bentuk teknologi komunikasi visual interaktif memiliki kemampuan untuk menyimpan data audio-visual, sebagai media untuk promosi dan pencitraan jaminan mutu, akuntabilitas dan kredibelitas perguruan tinggi. STMIK Indonesia Padang sebagai perguruan tinggi berbasis IT sangat membutuhkannya. Penelitian ini menggunakan pendekatan R & D (Research and Developmentdengan lima langkah utama (Borg & Gall, yaitu: 1 Menganalisis produk yang akan dikembangkan; 2 Pengembangkan produk awal; 3 Validasi ahli & revisi; 4 Uji coba lapangan & revisi produk; 5 Uji coba lapangan & produk akhir.Disini dilakukan analisa sejauhmana efisiensi perancangan dan pengembangan teknologi komunikasi visual interaktif aplikasi promosi bagi perguruan tinggi STMIK Indonesia Padang, mahasiswa, stakeholders serta memperkaya khasanah ilmu pengetahuan, dan teknologi. Penelitian ini bertujuan meningkatkan: kinerja/dukungan promosi; kegiatan publikasi; dan efisiensi informasi dengan memberikan informasimelalui tampilan multimedia audio visual interaktif.Hal ini akan dapat mengurangi pembiayaan dan pemborosan sumber daya manusia melalui efisiensi komunikasi, informasi, dan promosi.Kata Kunci : aplikasi promosi, interaktif, multimedia Promotion can be used to increase public confidence in the quality assurance of the higher education, the growing recognition of the quality assurance of the higher education so the more people who use its services. Promotion in the form of interactive visual communication technology has the ability to store the audio-visual data, as a medium for promotion and imaging quality assurance, accountability and credible of the higher education. STMIK Indonesia Padang as IT-based of the higher educationreally need it. This study uses the

  16. PENGHILANGAN NOISE PADA CITRA BERWARNA DENGAN METODE TOTAL VARIATION

    Directory of Open Access Journals (Sweden)

    Anny Yuniarti

    2006-01-01

    Full Text Available Normal 0 false false false IN X-NONE X-NONE MicrosoftInternetExplorer4 /* Style Definitions */ table.MsoNormalTable {mso-style-name:"Table Normal"; mso-tstyle-rowband-size:0; mso-tstyle-colband-size:0; mso-style-noshow:yes; mso-style-priority:99; mso-style-qformat:yes; mso-style-parent:""; mso-padding-alt:0cm 5.4pt 0cm 5.4pt; mso-para-margin:0cm; mso-para-margin-bottom:.0001pt; mso-pagination:widow-orphan; font-size:11.0pt; font-family:"Calibri","sans-serif"; mso-ascii-font-family:Calibri; mso-ascii-theme-font:minor-latin; mso-fareast-font-family:"Times New Roman"; mso-fareast-theme-font:minor-fareast; mso-hansi-font-family:Calibri; mso-hansi-theme-font:minor-latin; mso-bidi-font-family:"Times New Roman"; mso-bidi-theme-font:minor-bidi;} Saat ini multimedia telah menjadi teknologi yang cukup dominan. Tukar menukar informasi dalam bentuk citra sudah banyak dilakukan oleh masyarakat. Citra dengan kualitas yang baik sangat diperlukan dalam penyajian informasi. Citra yang memiliki noise kurang baik digunakan sebagai sarana informasi, oleh karena itu diperlukan suatu metode untuk memperbaiki kualitas citra. Metode yang digunakan dalam penelitian ini adalah metode total variation untuk penghilangan noise yang dapat diterapkan untuk model warna nonlinier, yaitu Chromaticity-Brightness (CB dan Hue-Saturation-Value (HSV. Filter total variation disebut filter yang bergantung pada data citra karena koefisien filternya diperoleh dari pemrosesan data citra dengan rumusan yang baku. Sehingga filter mask untuk masing-masing piksel memiliki kombinasi koefisien yang berbeda. Metode ini menggunakan proses iterasi untuk menyelesaikan persamaan dasar yang nonlinier. Uji coba dilakukan dengan menggunakan 30 data dengan berbagai jenis noise, yaitu gaussian, salt and pepper dan speckle. Uji coba pembandingan dengan metode filter median dan filter rata-rata. Dari percobaan ini menunjukkan bahwa metode total variation menghasilkan citra yang lebih baik daripada metode

  17. UPAYA PENUMBUHAN SIKAP TANGGAP BENCANA TSUNAMI MELALUI PEMBELAJARAN BERVISI SETS IPA KELAS V SEKOLAH DASAR

    Directory of Open Access Journals (Sweden)

    Tri Puas Restiadi

    2013-03-01

    Full Text Available AbstrakPembelajaran IPA di SD Negeri Glempangpasir 01 masih menggunakan metode ceramah dan hafalan serta kurang menekankan keterkaitan antara sains, lingkungan, teknologi dan masyarakat atau science, environment, technology, society (SETS dalam menumbuhkan sikap tanggap bencana tsunami. Penelitian ini bertujuan mengembangkan perangkat pemb- elajaran bervisi SETS IPA yang valid, efektif, dan praktis. Perangkat yang dikembangkan:  silabus, RPP, buku ajar, LKS, dan tes hasil belajar. Penelitian pengembangan (R & D ini terdiri atas 4 tahap yaitu tahap pengembangan, validasi, uji coba skala terbatas, dan uji coba skala luas. Data validitas dan kepraktisan perangkat pembelajaran dianalisis dengan deskriptif persentase. Perbedaan hasil belajar dianalisis dengan uji t-test berpasangan, sedangkan ke- tuntasan hasil belajar siswa dihitung dengan uji - z.. Hasil penelitian  menunjukkan bahwa perangkat pembelajaran berbasis SETS IPA valid dengan rerata nilai 3,69 pada kategori sangat baik. Penerapan perangkat pembelajaran berbasis SETS IPA praktis ditinjau dari rerata ket- erlaksanaan RPP 3,79 dalam kategori sangat baik, respons siswa dan respons guru mecapai kategori sangat baik. Penerapan  perangkat  pembelajaran berbasis SETS IPA efektif dalam mencapai ketuntasan hasil belajar klasikal ≥ 75% dan ketuntasan individu (KKM ≥ 70, rerata hasil belajar kelas eksperimen lebih besar dari rerata hasil belajar kelas kontrol, dan berbeda secara signifikan karena t hitung > t tabel. AbstractScience learning in elementary school Glempangpasir 01 still use the lecture method and rote and less stressed linkages between science, environment, technology and society or SETS in growing tsunami disas- ter responsiveness. This study aims to develop a vision of learning tools SETS IPA valid, effective, and practical. Device developed: syllabi, lesson plans, textbooks, worksheets, and achievement test. Research & development (R & D is composed of 4 phases: development

  18. PENGEMBANGAN MODEL PEMBELAJARAN MODIFIED STUDENT TEAMS ACHIEVEMENT DIVISION (MSTAD DALAM MENINGKATKAN HASIL BELAJAR SISWA PADA PEMBELAJARAN STRUKTUR ALJABAR

    Directory of Open Access Journals (Sweden)

    Kartika Sari

    2015-09-01

    Full Text Available The application of Students Team Achievement Division (STAD model in learning algebra structure indicated that the model is slow on detecting an error in understanding the material and it also need more time to completely delivered all of the course’s material. Therefore, in this study STAD was modified into Modified Students Teams Achievement Division (MSTAD. MSTAD development was carried out through three stages: developing new ideas based on previous research, developing results, and conducting trials. Trials  were performed  on  students taking  Algebra Structure 1  course in  2013/2014  and  2014/2015 academic year in one of the universities in Bali. Results showed that error in understanding the material was detected early, and every material was delivered on time. Statistical analysis also showed that class where MSTAD was applied achieve significantly better learning outcomes compared to STAD class and conventional class for 2013/2014 academic year (t= -9,339 < t0,05(41 = -2,702 as well as 2014/2015 academic year (Z0,5(1-0,01=0,4950 = 2,57.   ABSTRAK Penerapan   model   Student Team Achievement Division (STAD dalam pembelajaran Struktur Aljabar menunjukkan bahwa kesalahan dalam memahami materi lambat terdeteksi dan perlu tambahan waktu untuk menyelesaikan semua materi. Oleh karena itu, dalam penelitian ini dikembangkan modifikasi model STAD yaitu model pembelajaran Modified Student Teams Achievement Division (MSTAD.Pengembangan dilakukan melalui tiga tahap yaitu mengembangkan ide baru berdasarkan penelitian sebelumnya, mengem- bangkan hasil, dan melaksanakan uji coba. Uji coba dilakukan pada mahasiswa yang mengambil mata kuliah Struktur Aljabar 1 pada Tahun Ajaran 2013/2014 dan 2014/2015 di Jurusan Matematika salah satu Universitas di Bali. Hasil ujicoba menunjukkan bahwa kesalahan dalam memahami materi dapat terdeteksi lebih awal dan materi juga dapat diselesaikan tepat waktu. Hasil analisis statistik juga menunjukkan

  19. ANALISIS DAN PERANCANGAN ARSITEKTUR SISTEM OTENTIKASI TERINTEGRASI ANTARA PLATFORM LINUX, WINDOWS 2000, DAN NOVELL NETWARE: STUDI KASUS JURUSAN TEKNIK INFORMATIKA FTIF ITS

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    Rully Soelaiman

    2003-07-01

    Full Text Available Normal 0 false false false IN X-NONE X-NONE MicrosoftInternetExplorer4 /* Style Definitions */ table.MsoNormalTable {mso-style-name:"Table Normal"; mso-tstyle-rowband-size:0; mso-tstyle-colband-size:0; mso-style-noshow:yes; mso-style-priority:99; mso-style-qformat:yes; mso-style-parent:""; mso-padding-alt:0cm 5.4pt 0cm 5.4pt; mso-para-margin:0cm; mso-para-margin-bottom:.0001pt; mso-pagination:widow-orphan; font-size:11.0pt; font-family:"Calibri","sans-serif"; mso-ascii-font-family:Calibri; mso-ascii-theme-font:minor-latin; mso-fareast-font-family:"Times New Roman"; mso-fareast-theme-font:minor-fareast; mso-hansi-font-family:Calibri; mso-hansi-theme-font:minor-latin; mso-bidi-font-family:"Times New Roman"; mso-bidi-theme-font:minor-bidi;} Jurusan Teknik Infomatika merupakan suatu organisasi yang menggunakan jaringan komputer yang diakses dari beberapa domain dan menggunakan sistem operasi terpisah. Masing-masing sistem tersebut menggunakan pengelolaan autentikasi yang terpisah, dengan kenyataan bahwa seharusnya dapat diakses oleh setiap anggota organisasi ini. Kebutuhan pengguna dan pengelola jaringan akan efisiensi pemakaian informasi autentikasi menjadi permasalahan yang akan dibahasa dana makalah ini. Pada makalah ini, dilakukan analisis kemungkinan dilakukannya otentikasi terintegrasi pada jaringan komputer Teknik Informatika yang menggunakan Windows 2000, Linux, dan Novell Netware. Analisis dilakukan dengan meninjau kemampuan integrasi direktori, metode otentikasi, dan kerjasama dengan sistem lain. Dari hasil pemetaan terhadap kebutuhan dan ketersediaan sumber daya teknologi pada jurusan, dipilih solusi otentikasi menggunakan Samba dan OpenLDAP untuk melayani permintaan otentikasi dari Windows 2000 dan Linux. Uji coba telah dilakukan untuk otentikasi client Windows 2000 dan Linux , mencakup login dari masing-masing sistem operasi, domain yang berbeda, menggunakan satu username dan password. Uji coba juga dilakukan terhadap proses

  20. Repeat testing of low-level HIV-1 RNA: assay performance and implementation in clinical trials.

    Science.gov (United States)

    White, Kirsten; Garner, Will; Wei, Lilian; Eron, Joseph J; Zhong, Lijie; Miller, Michael D; Martin, Hal; Plummer, Andrew; Tran-Muchowski, Cecilia; Lindstrom, Kim; Porter, James; Piontkowsky, David; Light, Angela; Reiske, Heinz; Quirk, Erin

    2018-05-15

    Assess the performance of HIV-1 RNA repeat testing of stored samples in cases of low-level viremia during clinical trials. Prospective and retrospective analysis of randomized clinical trial samples and reference standards. To evaluate assay variability of the Cobas AmpliPrep/Cobas TaqMan HIV-1 Test, v2.0, three separate sources of samples were utilized: the World Health Organization (WHO) HIV reference standard (assayed using 50 independent measurements at six viral loads <200 copies/ml), retrospective analysis of four to six aliquots of plasma samples from four clinical trial participants, and prospective repeat testing of 120 samples from participants in randomized trials with low-level viremia. The TaqMan assay on the WHO HIV-1 RNA standards at viral loads <200 copies/ml performed within the expected variability according to assay specifications. However, standards with low viral loads of 36 and 18 copies/ml reported values of ≥ 50 copies/ml in 66 and 18% of tests, respectively. In participants treated with antiretrovirals who had unexpected viremia of 50-200 copies/ml after achieving <50 copies/ml, retesting of multiple aliquots of stored plasma found <50 copies/ml in nearly all cases upon retesting (14/15; 93%). Repeat testing was prospectively implemented in four clinical trials for all samples with virologic rebound of 50-200 copies/ml (n = 120 samples from 92 participants) from which 42% (50/120) had a retest result of less than 50 copies/ml and 58% (70/120) retested ≥ 50 copies/ml. The TaqMan HIV-1 RNA assay shows variability around 50 copies/ml that affects clinical trial results and may impact clinical practice. In participants with a history of viral load suppression, unexpected low-level viremia may be because of assay variability rather than low drug adherence or true virologic failure. Retesting a stored aliquot of the same sample may differentiate between assay variability and virologic failure as the source of viremia

  1. PEMBELAJARAN MATEMATIKA MODEL DOUBLE LOOP PROBLEM SOLVING DENGAN PENDEKATAN PMRI BERMUATAN KARAKTER UNTUK MENINGKATKAN KEMAMPUAN PEMECAHAN MASALAH

    Directory of Open Access Journals (Sweden)

    Indrati Rahayu

    2014-06-01

    Full Text Available AbstrakTujuan dari penelitian ini  adalah  untuk memperoleh hasil perangkat pembelajaran matematika model DLPS dengan pendekatan PMRI yang valid, praktis dan efektif. Perangkat pembelajaran yang dikembangkan meliputi Silabus, RPP, Buku Peserta didik, LKPD dan test kemampuan pemecahan masalah. Subyek uji coba dalam penelitian ini adalah peserta didik kelas X semester genap SMAN 4 Semarang. Variabel penelitian meliputi keaktivan (X1 dan sikap peserta didik (X2 dan kemampuan pemecahan masalah (Y. Pengembangan perangkat pembelajaran   mengacu pada model Plomp, yaitu: (1 investigasi awal (prelimenary investigation, (2 perancangan (design; (3 realisasi/ kontruksi (realization/construction, (4 pengujian, evaluasi dan revisi (test, evaluation and revision, dan (5 implementasi (implementation. Hasil Penelitian menunjukkan: (1 perangkat pembelajaran yang dikembangkan telah dinyatakan valid dan (2 uji coba perangkat menghasilkan (a secara signifikan prestasi belajar peserta didik melebihi KKM = 70 dan lebih dari 80% peserta didik mencapai KKM yaitu 93,75%. Simpulan dari penelitian ini adalah model DLPS dengan Pendekatan PMRI bermuatan karakter untuk meningkatkan kemampuan pemecahan masalah materi trigonometri kelas X merupakan model pembelajaran yang valid dan efektif, dan praktis.AbstractThe purpose of this study is to obtain the results of mathematical learning DLPS models with PMRI approachment charged   character that is valid, pratical and effective. The learning instruments which are developed include syllabus, lesson plan, student book, student work sheets, and problem solving abilities test. The subject of this study are the students of Senior High School 4 Semarang. The variable of this research include the activity as (X1 and the student’s attitudes as (X2. while the dependent variable is the problem solving abilities as (Y. The learning development refers to a model of Plomp i.e : (1 prelimenary investigation, (2 design, (3 realization

  2. Preliminary study on domestication of coconut crab (Birgus latro

    Directory of Open Access Journals (Sweden)

    . Sulistiono

    2007-07-01

    Full Text Available Preliminary study on domestication of coconut crab (Birgus latro had been done since June - November 2004 and December - 2005 February 2006.  Study was carried out in two locations namely Laboratory of Sekolah Tinggi Kelautan dan Perikanan, Palu to study adult crab, and Laboratory of Ecobiology of Faculty of Fisheries and Marine Science, Bogor Agricultural University to study crab in clomang stage.  Adult crabs were collected by using some fishing gears namely trap, net and directly using bamboo stick.  Domestication was done in rearing batch sized 1x1x1 m3 with artificial nests (30x15x15 cm3, and small batch for water (7x10x10 cm3.  While for clomang stage, crabs were reared in aquarium (80x40x40 cm3 with debris and small water batch.  Result showed that adult crab had a survival rate around 12.5-0%, and mortality around 50-87.5%.  A similar result was also in clomang stage, which was 12.5% for survival rate and 87.5% for mortality.  Adult coconut crab was preferred to feed coconut than other food likely vegetable and chick. Keywords: domestication, coconut crab, Birgus latro, food habit   ABSTRAK Penelitian awal mengenai kajian awal penangkaran kepiting kelapa (Birgus latro dilakukan pada bulan Juni - November 2004 dan Desember 2005 Februari 2006.  Pelaksanaan penelitian di lakukan di dua tempat, yaitu Laboratorium Sekolah Tinggi Kelautan dan Perikanan, Palu untuk percobaan kepiting dewasa, dan Laboratorium Ekobiologi Fakultas Perikanan dan Ilmu Kelautan IPB Bogor,  untuk percobaan kepiting tahap klomang.  Kepiting dewasa ditangkap dengan menggunakan beberapa peralatan a.l. perangkap, jaring dan secara langsung dengan tongkat.  Penangkaran dilakukan di bak-bak peliharaan berukuran 1x1x1 m3 yang dilengkapi dengan tempat persembunyian (30x15x15 cm3, dan bak kecil tempat air (7x10x10 cm3.  Sedangkan kepiting tahap klomang dipelihara di akuarium (80x40x40 cm3 yang diberi daun/serasah dan tempat air.  Hasil uji coba penangkaran

  3. Pengenalan Angka Pada Sistem Operasi Android Dengan Menggunakan Metode Template Matching

    Directory of Open Access Journals (Sweden)

    Abdi Pandu Kusuma

    2016-07-01

    Full Text Available AbstrakUsia dini merupakan usia yang efektif untuk mengembangkan berbagai potensi yang dimiliki oleh anak. Upaya pengembangan potensi dapat dilakukan melalui berbagai cara termasuk dengan cara bermain. Bermain bagi anak merupakan cara yang tepat untuk belajar. Berdasarkan fenomena tersebut, maka perlu dibuat sebuah aplikasi pengenalan angka yang interaktif dengan unsur edukasi. Aplikasi tersebut diharapkan dapat mengambil keputusan secara otomatis apa yang ditulis anak itu bernilai benar atau salah dan juga dapat membangkitkan semangat belajar anak dalam mengenal pola angka. Solusi yang sesuai agar aplikasi tersebut dapat memberikan jawaban salah atau benar digunakan satu metode yaitu template matching. Pengenalan angka dengan menggunakan metode template matching dilakukan dengan cara membandingkan citra masukan dengan citra template. Hasil template matching dihitung dari banyaknya titik pada citra masukan yang sesuai dengan citra template. Template disediakan pada database untuk memberikan contoh cara penulisan pola angka. Uji coba dilakukan pada aplikasi sebanyak 40 kali dengan pola yang berbeda. Dari hasil uji coba didapat prosentase keberhasilan aplikasi ini mencapai 75,75%.Kata kunci: Belajar, bermain, Template Matching, dan pola. AbstractEarly childhood is an effective age to develop the potential of the child. Potential development efforts can be done through various ways, including by playing. Playing for children is a great way to learn. Based on this phenomenon, it should be made an introduction to the numbers interactive application with elements of education. The application is expected to take decisions automatically what the child is written is true or false, and also can encourage a child's learning in recognizing number patterns. Appropriate solutions so that the app can give an answer right or wrong to use the methods that template matching. The introduction of the numbers by using template matching is done by comparing the

  4. PENGEMBANGAN MEDIA PEMBELAJARAN KIMIA BERBASIS ANDROID UNTUK MENINGKATKAN MOTIVASI BELAJAR DAN PRESTASI KOGNITIF PESERTA DIDIK SMA

    Directory of Open Access Journals (Sweden)

    Isma Ramadhani Lubis

    2015-10-01

    Full Text Available Penelitian ini bertujuan untuk mengembangkan media pembelajaran kimia berbasis android dan mengetahui karakteristik, kualitas dan efektifitas dari media pembelajaran berbasis android. Jenis penelitian ini merupakan penelitian dan pengembangan. Penilaian produk dilakukan oleh ahli media, ahli materi, pendidik kimia, peer reviewers dan uji coba peserta didik. Data penelitian dikumpulkan melalui angket penilaian media, angket motivasi dan tes, kemudian dianalisis dengan Manova. Hasil dari penelitian ini adalah: (1 media pembelajaran kimia berbasis android memiliki karakteristik, yaitu visualisasi menarik, praktis dan fleksibel serta evaluasi soal yang variatif, (2 media pembelajaran kimia berbasis android dinilai layak digunakan dalam pembelajaran, ditinjau dari aspek materi, aspek media dan hasil uji coba peserta didik, serta (3 terdapat peningkatan yang signifikan antara motivasi belajar dan prestasi kognitif peserta didik yang mengikuti pembelajaran menggunakan media pembelajaran kimia berbasis android dengan pembelajaran konvensional. Hasil penelitian ini menunjukkan bahwa media pembelajaran kimia berbasis android layak dan efektif digunakan dalam pembelajaran kimia. Kata Kunci: pengembangan, media pembelajaran kimia berbasis android, motivasi, prestasi kognitif.   DEVELOPING ANDROID-BASED CHEMISTRY INSTRUCTIONAL MEDIA TO IMPROVE THE LEARNING MOTIVATION AND COGNITIVE ACHIEVEMENT OF SMA STUDENTS Abstract The aims of this study are: to develop android-based chemistry instructional media and to reveal the characteristic, the quality, and the effectiveness of android-based chemistry instructional media. This research was research and development. The product assessment was conducted by a media expert, a material expert, chemistry teachers peer reviewers and students. The data collecting technique was done by using media evaluation questionnaires, motivation questionnaire and test, then it was analysed by Manova. The results of the study show that

  5. Evaluation of the human immunodeficiency virus type 1 and 2 antibodies detection in dried whole blood spots (dbs samples Pesquisa de anticorpos contra o vírus da imunodeficiência humana tipos 1 e 2 em amostras de sangue seco coletadas em papel filtro

    Directory of Open Access Journals (Sweden)

    Andréa Cauduro de Castro

    2008-06-01

    Full Text Available Human Immunodeficiency Vírus Type 1 and 2 antibodies detection was performed in 457 dried whole blood spots samples (S&S 903. Q-Preven HIV 1+2 was the screening test used. The results were compared with the gold standard serum tests by ELISA (Cobas Core e Axsym HIV1/2 gO and imunofluorescence was the definitive confirmatory test. The samples were obtained from the Hospital Nossa Senhora da Conceição in Porto Alegre, RS - Brazil, through whole blood transfer to filter paper card and sent to Caxias do Sul, RS - Brazil where the tests were performed. The dried whole blood spot stability was evaluated with two different panels. The first one was composed of five negative and five positive samples stored at room temperature, 4 ºC, -20 ºC and -70 ºC, while the second was composed of two negative and three positive samples stored at 37 ºC (humidity Foram realizados 457 testes para detectar anticorpos contra o Vírus da Imunodeficiência Humana tipos 1 e 2, em amostras de sangue total seco coletadas em papel filtro (S&S 903, com o teste de triagem Q-Preven HIV 1+2, comparando-se com os resultados dos testes de triagem no soro (Cobas Core e Axsym HIV1/2 gO, sendo a imunofluorescência indireta o teste confirmatório. As amostras foram obtidas no Hospital Conceição em Porto Alegre, pela transferência de sangue total para cartão de papel filtro e encaminhadas para Caxias do Sul para a realização dos testes. Foi analisada a estabilidade da amostra em papel filtro com a utilização de dois painéis: o primeiro com cinco amostras negativas e cinco positivas armazenadas por seis semanas à temperatura ambiente, 4 ºC, -20 ºC e -70 ºC; o segundo com duas negativas e três positivas armazenadas por seis semanas com avaliações semanais a 37 ºC (umidade <50%. Os resultados de todas as amostras testadas foram mantidos. A sensibilidade foi de 100%, a especificidade de 99,6%, o valor preditivo positivo de 99,5% e o valor preditivo negativo de 100

  6. KOMPONEN WEB DATA ANALYZER PADA IE STUDI KASUS: AKSES WEB TERFAVORIT LABORATORIUM IBS TEKNIK INFORMATIKA - ITS

    Directory of Open Access Journals (Sweden)

    Darlis Heru Murti

    2005-07-01

    Explorer. Untuk itu di dalam pelaksanaan penelitian ini, akan dilakukan perancangan dan pembuatan sebuah perangkat lunak komponen Web Data Analyzer yang melekat pada browser Internet Explorer untuk pencarian akses web terfavorit pengguna. Uji coba dan evaluasi pada penelitian ini dilakukan dengan melakukan instalasi komponen Web Data Analyzer pada sejumlah workstation di Laboratorium IBS Teknik Informatika ITS. Hasil uji coba menunjukkan bahwa komponen Web Data Analyzer mampu memonitor dan menganalisa data aktivitas browsing pengguna serta melakukan otomatisasi terhadap fitur Favorites Internet Explorer dari data aktivitas browsing pengguna yang berhasil tersimpan ke database server. Kata kunci: band object, explorer bar, browser helper object (bho, http analyzer.

  7. Pengembangan tes kemampuan literasi sains pada materi momentum dan impuls dengan Analisis Item Response Theory (IRT

    Directory of Open Access Journals (Sweden)

    Della Apriyani Kusuma Putri

    2018-04-01

    Full Text Available Kemampuan literasi sains adalah suatu kemampuan yang memungkinkan seseorang untuk membuat suatu keputusan dengan pengetahuan konsep dan proses sains yang dimilikinya. Berbagai macam permasalahan yang terjadi di era globalisasi ini menuntut siswa untuk tidak hanya cakap dalam aspek kognitif tapi juga mampu memberi keputusan untuk memecahkan permasalahan, sehingga dapat dikatakan bahwa kemampuan literasi sains adalah kemampuan yang penting dan harus dimiliki siswa. Oleh karena itu, dibutuhkan instrumen untuk mengukur kemampuan literasi sains. hal inilah yang mendasari peneliti mengembangkan instrumen kemampuan literasi sains. Tujuan penelitian ini adalah untuk mengembangkan dan mengetahui karakteristik tes kemampuan literasi sains fisika siswa SMA pada materi momentum dan impuls berdasarkan aspek literasi sains yang dikemukakan oleh Gormally. Metode penelitian yang diterapkan adalah penelitian dan pengembangan (Research and Development yaitu metode penelitian yang digunakan untuk menghasilkan produk tertentu, dan menguji keefektifan produk tersebut. Sebelum diuji coba tes telah divalidasi oleh tiga orang validator dan menghasilkan kesimpulan bahwa tes cukup baik dan dapat diuji coba. Hasil analisis menggunakan Item Response Theory menunjukkan bahwa model 3PL adalah model yang sesuai dengan karakteristik tes. Sedangkan karakteristik tes yang meliputi daya pembeda, tingkat kesukaran, dan faktor tebakan termasuk dalam kategori baik. Science literacy skills is an ability that allows one to make a decision with the knowledge of the concepts and processes of science has. A wide variety of problems that occur in a globalized world requires students to not only proficient in cognitive but also able to make a decision to solve the problem, so it can be said that the ability of science literacy is an important capability and must be owned by the students. Therefore, the instrument is required to measure the ability of science literacy. This problem is

  8. Instructional Materials Physics High School with Multi Representation Approach

    Directory of Open Access Journals (Sweden)

    Yuvita Widi Astuti

    2014-06-01

    disesuaikan dengan kebutuhan penelitian. Instrumen penelitian yang digunakan berupa angket kelayakan. Jenis data yang diperoleh adalah data kuantitatif dan data kualitatif. Hasil uji coba menunjukkan bahwa bahan ajar hasil pengembangan dapat dikategorikan sangat layak. Hasil uji coba lapangan menunjukkan bahwa: (1 sebagian besar siswa pada kelas eksperimen memperoleh hasil tes diatas KKM, (2 hasil postes kelas eksperimen lebih besar daripada kelas kontrol, sehingga bahan ajar dikatakan efektif, namun tidak signifikan untuk meningkatkan pemahaman konsep fisika. Kata kunci: bahan ajar, multi representasi, dinamika rotasi

  9. SISTEM BERBASIS PENGETAHUAN UNTUK KENAIKAN PANGKAT MILITER TNI AU

    Directory of Open Access Journals (Sweden)

    Joko Lianto Buliali

    2007-01-01

    digunakan pada implementasi sistem. Studi kasus pada penelitian ini dilakukan di Pusdiklat Hanudnas Surabaya. Uji coba dilaksanakan dengan menggunakan data yang telah diperiksa dan disetujui oleh pihak Pusdiklat Hanudnas Surabaya. Dari hasil uji coba tersebut disimpulkan bahwa sistem berjalan dengan baik yaitu bahwa hasil akhir yang diperoleh sistem sama dengan hasil perhitungan secara manual. Kata kunci: sistem berbasis pengetahuan, aturan, kenaikan pangkat, personel militer, TNI AU.

  10. PENGEMBANGAN PERANGKAT PERKULIAHAN KEGIATAN LABORATORIUM FISIKA DASAR II BERBASIS INKUIRI TERBIMBING UNTUK MENINGKATKAN KERJA ILMIAH MAHASISWA

    Directory of Open Access Journals (Sweden)

    R. Ariesta

    2012-02-01

    Full Text Available Tujuan penelitian adalah mengembangkan bentuk perangkat perkuliahan kegiatan Laboratorium Fisika Dasar II berbasis inkuiriterbimbing untuk meningkatkan kemampuan kerja ilmiah mahasiswa. Pengembangan perangkat perkuliahan ini mengikuti modelPlomp meliputi fase investigasi awal, fase desain, fase realisasi/konstruksi, fase tes, evaluasi, revisi dan fase implementasi.Analisis data meliputi analisis hasil validasi perangkat secara deskriptif kualitatif, hasil penyekoran lembar observasi dianalisissecara deskriptif kualitatif, analisis hasil tes dengan N-Gain, analisis hasil uji coba soal tes (uji validitas, reliabilitas, tingkatkesukaran, dan daya beda soal. Hasil penelitian ini ditunjukkan oleh perolehan persentase kerja ilmiah mahasiswa secara klasikalsebesar 91,67% dengan kriteria sangat baik, sikap ilmiah dengan persentase 87,50% dengan kriteria sangat baik, penyusunanlaporan oleh mahasiswa dengan persentase 76,88% dengan kriteria baik, serta peningkatan rata-rata hasil belajar (rata-rata gainpertemuan pertama 0,58(sedang, pertemuan kedua 0,56 (sedang, pertemuan ketiga 0,7 (sedang, dan pertemuan keempat 0,93(tinggi. Hasil uji coba pengembangan bentuk perangkat perkuliahan kegiatan Laboratorium Fisika Dasar II berbasis inkuiriterbimbing dapat meningkatkan kerja ilmiah mahasiswa. The research is aimed to develop teaching material of Fundamental Physics 2 Laboratory based on guided inquiry model and toincrease the students' scientific performance. The development of the teaching material is based on Plomp model, consist ofpreliminary investigation phase, design phase, construction phase, test phase, evaluation and revision phase and implementationphase. The instrument validity and scoring from observation sheets were analyzed qualitative-descriptively; the test result wasanalyzed using N-Gain; and try-out test results were analyzed using validity, reliability, item difficulty, and item discriminant test. Theanalysis results show that the

  11. Particle transport in subaqueous eruptions: An experimental investigation

    Science.gov (United States)

    Verolino, A.; White, J. D. L.; Zimanowski, B.

    2018-01-01

    Subaqueous volcanic eruptions are natural events common under the world's oceans. Here we report results from bench-scale underwater explosions that entrain and eject particles into a water tank. Our aim was to examine how particles are transferred to the water column and begin to sediment from it, and to visualize and interpret evolution of the 'eruption' cloud. Understanding particle transfer to water is a key requirement for using deposit characteristics to infer behaviour and evolution of an underwater eruption. For the experiments here, we used compressed argon to force different types of particles, under known driving pressures, into water within a container, and recorded the results at 1 MPx/frame and 1000 fps. Three types of runs were completed: (1) particles within water were driven into a water-filled container; (2) dry particles were driven into water; (3) dry particles were driven into air at atmospheric pressure. Across the range of particles used for all subaqueous runs, we observed: a) initial doming, b) a main expansion of decompressing gas, and c) a phase of necking, when a forced plume separated from the driving jet. Phase c did not take place for the subaerial runs. A key observation is that none of the subaqueous explosions produced a single, simple, open cavity; in all cases, multiphase mixtures of gas bubbles, particles and water were formed. Explosions in which the expanding argon ejects particles in air, analogous to delivery of particles created in an explosion, produce jets and forced plumes that release particles into the tank more readily than do those in which particles in water are driven into the tank. The latter runs mimic propulsion of an existing vent slurry by an explosion. Explosions with different particle types also yielded differences in behaviour controlled primarily by particle mass, particle density, and particle-population homogeneity. Particles were quickly delivered into the water column during plume rise following

  12. Doxorubicin induced neuro- and cardiotoxicities in experimental rats: Protection against oxidative damage by Theobroma cacao Stem bark

    Directory of Open Access Journals (Sweden)

    A.M. Kosoko

    2017-07-01

    Full Text Available 80 rats, randomly selected, were divided into 3 treatment groups: pre-, co- and post-treatment; consisting of 6 sub-groups each (5 rats per sub-group: baseline, normal saline (2 mL, α-lipoic acid (20 mg/kg body weight, 200 mg/kg, 400 mg/kg or 800 mg/kg body weight Theobroma cacao stem bark aqueous extract (TCAE. All rats except for baseline group were intoxicated with 20 mg/kg body weight doxorubicin (DOX intraperitoneally. The animals in pre- or post-treatment group received a single dose of DOX (20 mg/kg body weight intraperitoneally 24 h before or after 7 days’ oral administration with TCAE respectively while those in co-treatment group were co-administered 2.86 mg/kg body weight of DOX with either normal saline, α- lipoic acid or TCAE orally for 7 days. Animals were sacrificed (pre- and post- treatment groups were sacrificed on the ninth day while the co-treatment group sacrificed on the 8th day. Brain and heart tissue samples were harvested for enzyme markers of toxicity, oxidative stress and histopathological examinations. DOX intoxication caused significant decrease in activities of LDH and ACP, and increase in γGT and ALP activities in brain tissues while causing a significant increase in LDH, ACP, γGT activities and decrease in ALP activity in the cardiac tissues. DOX intoxication caused a significant increase in concentrations of H2O2 generated, MDA and PC, XO, MPx and NOX activities with concomitant decrease in CAT, SOD, GPx and GST activities, and in concentrations of GSH, AsA and α-Toc in brain and cardiac tissues. Pre-, co- and post-treatment with TCAE at either 200 mg/kg, 400 mg/kg or 800 mg/kg body weight significantly reversed the oxidative damage to the organs induced by DOX-intoxication. The result affirmed that T. cacao stem bark aqueous extract protected against DOX induced oxidative damage in brain and cardiac tissues of experimental rats.

  13. Distribuição dos brônquios lobares dos pulmões do veado-catingueiro Mazama gouazoubira

    Directory of Open Access Journals (Sweden)

    Tracy Martina M. Martins

    2014-05-01

    Full Text Available Este estudo teve como objetivo descrever a lobação do pulmão do veado-catingueiro Mazama gouazoubira. Dois animais da espécie, obtidos post mortem por atropelamento em rodovia, foram utilizados para o estudo, obedecendo aos critérios da Lei Vigente (Lei 1.153/95. Através da dissecação, a pele foi completamente removida e os animais foram fixados em solução de formaldeído a 10%. Através de um acesso ventral, o bloco de vísceras foi removido e posteriormente os pulmões foram dissecados do bloco por uma secção na região torácica da traqueia e de outras estruturas do hilo pulmonar. Os pulmões e a árvore brônquica foram dissecados, fotografados, as imagens foram registradas com câmera fotográfica digital (Câmera Sony a200, 10.2mpx. Os pulmões apresentaram-se unidos pelas estruturas que penetravam a região do hilo pulmonar, o pulmão direito do veado-catingueiro mostrou ser composto pelos lobos cranial (segmento cranial e segmento caudal, médio, caudal e acessório. O pulmão esquerdo apresentou apenas lobo cranial (segmentado em parte cranial e parte caudal e lobo caudal. A árvore brônquica se inicia emergindo para o pulmão direito um brônquio traqueal acima da bifurcação da traqueia que sequencialmente serão denominados de brônquios principais direito e esquerdo, os quais no nível do hilo pulmonar penetram nos pulmões direito e esquerdo respectivamente. Os pulmões e árvore brônquica de M. gouazoubira apresentaram a mesma descrição anatômica de outros ruminantes, como bubalinos, ovinos e bovinos.

  14. Projeto de um sensor de pressão manométrica para ensino de física em tempo real

    Directory of Open Access Journals (Sweden)

    Fábio Saraiva da Rocha

    2013-11-01

    Full Text Available http://dx.doi.org/10.5007/2175-7941.2014v31n1p124 Apresentamos o projeto de um sensor de pressão manométrica voltado ao ensino de física experimental. Este dispositivo permite a medida da pressão de um sistema gasoso em comparação com a pressão atmosférica local. O sensor é composto de um transdutor de pressão piezoresistivo e uma placa de desenvolvimento Arduíno para digitalização de leituras analógicas do transdutor, tratamento dos dados e comunicação digital através da interface USB. O sensor de pressão permite que os dados de pressão possam ser transferidos a um computador e acompanhados ao longo da execução de um experimento, com a apresentação de tabelas e gráficos em tempo real (Física em Tempo Real – FTR, utilizando a ferramenta de aquisição de dados PLX-DAQ e a planilha eletrônica Excel. Apresentamos, inicialmente, as características físicas e operacionais do transdutor MPX4250GP, aspectos gerais da placa Arduíno e detalhamos a programação computacional envolvida em todo o projeto. Discutimos o desempenho e limitações deste sensor quando comparado a um sensor comercial GPS-BTA da marca Vernier. Apresentamos a possibilidade de uso deste dispositivo em uma prática ilustrativa com balões de látex dispostos num sistema físico que pode ser facilmente reproduzido em um laboratório didático de física experimental ou mesmo numa sala de aula comum. O sensor de pressão apresentou desempenho similar ao sensor comercial GPS-BTA, e seu uso se mostra promissor em práticas de ensino de física que busquem a inovação no laboratório didático, a possibilidade de utilizar o recurso da FTR com uma classe demonstrativa, ou pelo envolvimento de estudantes em projetos interdisciplinares.

  15. Imaging Asteroid 4 Vesta Using the Framing Camera

    Science.gov (United States)

    Keller, H. Uwe; Nathues, Andreas; Coradini, Angioletta; Jaumann, Ralf; Jorda, Laurent; Li, Jian-Yang; Mittlefehldt, David W.; Mottola, Stefano; Raymond, C. A.; Schroeder, Stefan E.

    2011-01-01

    The Framing Camera (FC) onboard the Dawn spacecraft serves a dual purpose. Next to its central role as a prime science instrument it is also used for the complex navigation of the ion drive spacecraft. The CCD detector with 1024 by 1024 pixels provides the stability for a multiyear mission and its high requirements of photometric accuracy over the wavelength band from 400 to 1000 nm covered by 7 band-pass filters. Vesta will be observed from 3 orbit stages with image scales of 227, 63, and 17 m/px, respectively. The mapping of Vesta s surface with medium resolution will be only completed during the exit phase when the north pole will be illuminated. A detailed pointing strategy will cover the surface at least twice at similar phase angles to provide stereo views for reconstruction of the topography. During approach the phase function of Vesta was determined over a range of angles not accessible from earth. This is the first step in deriving the photometric function of the surface. Combining the topography based on stereo tie points with the photometry in an iterative procedure will disclose details of the surface morphology at considerably smaller scales than the pixel scale. The 7 color filters are well positioned to provide information on the spectral slope in the visible, the depth of the strong pyroxene absorption band, and their variability over the surface. Cross calibration with the VIR spectrometer that extends into the near IR will provide detailed maps of Vesta s surface mineralogy and physical properties. Georeferencing all these observation will result in a coherent and unique data set. During Dawn s approach and capture FC has already demonstrated its performance. The strong variation observed by the Hubble Space Telescope can now be correlated with surface units and features. We will report on results obtained from images taken during survey mode covering the whole illuminated surface. Vesta is a planet-like differentiated body, but its surface

  16. SISTEM INFORMASI RENSTRA DAN RENOP JURUSAN TEKNIK ELEKTRO POLITEKNIK NEGERI SEMARANG

    Directory of Open Access Journals (Sweden)

    Alifia Choirunnisa

    2016-10-01

    Full Text Available Setiap jurusan di Politeknik Negeri Semarang mempunyai Rencana Strategi (Renstra dan Rencana Operasional (Renop untuk mengelola dan memantau perkembangan jurusannya masing-masing. Salah satu jurusannya yaitu jurusan Teknik Elektro. Dalam pengelolaan data perencanaan strategi dan operasional jurusan Teknik Elektro masih dilakukan secara manual. Dengan memanfaatkan teknologi sistem informasi, Sistem Informasi Renstra dan Renop Jurusan Teknik Elektro Berbasis Web mengubah sistem pengelolaan dari manual menjadi berbasis teknologi sistem informasi yang lebih efisien dan efektif. Tujuan dari pembuatan sistem informasi ini adalah untuk menghasilkan sebuah Sistem Informasi Renstra dan Renop Jurusan Teknik Elektro Berbasis Web serta membantu dan memberikan kemudahan dalam pengelolaan informasi Renstra dan Renop. Metode yang digunakan dalam penelitian ini adalah metodologi waterfall, dimana dalam metodologi ini setiap langkah penelitian dilakukan secara berurutan, mulai dari tahapan Analisis Kebutuhan, Desain Sistem, Implementasi dan Pengujian Unit, Integrasi dan Pengujian Sistem, serta Operasi dan Pemeliharaan. Perancangan sistem menggunakan model Data Flow Diagram (DFD. Pembangunan sistem menggunakan bahasa pemrograman PHP dan framework codeigniter serta database MySQL. Pengujian sistem menggunakan metode pengujian setiap unit fungsi dari masing-masing fitur. Hasil dari penelitian ini yaitu sebuah sistem informasi yang dapat membantu ketua jurusan, sekretaris jurusan, maupun ketua program studi dalam mengelola Renstra dan Renop. Sistem ini telah di uji coba dengan hasil tingkat kepuasan pengguna sebesar 81,2%.

  17. PEMANFATAN TEOREMA BAYES DALAM PENENTUAN PENYAKIT THT

    Directory of Open Access Journals (Sweden)

    Sri Winiarti

    2008-07-01

    Full Text Available Dalam konsep pelacakan dalam mencari solusi dengan pendekatan artificial inteligent, ada berbagai metode yang dapat diterapkan untuk mengatasi masalah ketidakpastian saat proses pelacakan terjadi. Salah satunya adalah teorema bayes. Adanya ketidakpastian pada proses pelacakan dapat terjadi karena adanya perubahan pengetahuan yang ada di dalam sistem. Untuk itu diperlukan adanya suatu metode untuk mengatasi permasalahan tersebut. Dalam penelitian ini telah diterapkan suatu metode untuk mengatasi ketidakpastian dengan teorema Bayes pada kasus pelacakan untuk mendiagnosa penyakit pada THT (Telinga,Hidung dan Tenggorokan. Subjek pada penelitian ini adalah proses pelacakan untuk menentukan penyakit THT dengan model penalaran forward chaining dan metode kepastiannya menggunakan teorema bayes dengan cara menghitung nilai probabilitas suatu penyakit dan membandingkan probabilitas setiap gejalanya. Model pengembangan perangkat lunak yang digunakan dalam penelitian ini adalah Waterfall. Metode Waterfall diawali dengan analisis data, perancangan sistem, pengkodean menggunakan Visual Basic 6.0, pengujian sistem dengan black box test dan alfa test. Dari penelitian yang dilakukan menghasilkan sebuah perangkat lunak yaitu yang mampu menentukan penyakit pada THT dengan menerapkan metode bayes untuk mengatasi ketidakpastian. Hasil uji coba sistem menujukkan bahwa aplikasi ini layak dan dapat digunakan. Kata kunci : Penyakit, THT, Teorema Bayes.

  18. PEMANFATAN TEOREMA BAYES DALAM PENENTUAN PENYAKIT THT

    Directory of Open Access Journals (Sweden)

    Sri Winiarti

    2012-05-01

    Full Text Available Dalam konsep pelacakan dalam mencari solusi dengan pendekatan artificial inteligent, ada berbagai metode  yang dapat diterapkan untuk mengatasi masalah ketidakpastian saat proses pelacakan terjadi. Salah satunya adalah teorema bayes. Adanya ketidakpastian pada proses pelacakan dapat terjadi karena adanya perubahan pengetahuan yang ada di dalam sistem. Untuk itu diperlukan adanya suatu metode untuk mengatasi permasalahan tersebut. Dalam penelitian ini telah diterapkan suatu metode untuk mengatasi ketidakpastian dengan teorema Bayes pada kasus pelacakan untuk mendiagnosa penyakit pada THT (Telinga,Hidung dan Tenggorokan.  Subjek pada penelitian ini adalah proses pelacakan untuk menentukan penyakit THT dengan model penalaran forward chaining dan metode kepastiannya menggunakan teorema bayes dengan cara menghitung nilai probabilitas suatu penyakit dan membandingkan probabilitas setiap gejalanya. Model pengembangan perangkat lunak yang digunakan dalam penelitian ini adalah Waterfall. Metode Waterfall diawali dengan analisis data, perancangan sistem, pengkodean menggunakan Visual Basic 6.0, pengujian sistem dengan black box test dan alfa test. Dari penelitian yang dilakukan menghasilkan sebuah perangkat lunak yaitu  yang mampu menentukan penyakit pada THT dengan menerapkan metode bayes untuk mengatasi ketidakpastian. Hasil uji coba sistem menujukkan bahwa aplikasi ini layak dan dapat digunakan.

  19. Implementasi Wireless Quality of Service dengan Metode Load Switching Jaringan Seluler Menggunakan Software Defined Network untuk Meningkatkan Network Reliability pada Jaringan Dinamis

    Directory of Open Access Journals (Sweden)

    Yoga Bayu Aji Pranawa

    2017-03-01

    Full Text Available Wireless Quality of Service (QOS adalah salah satu dimensi mobilitas, yaitu sebuah metode yang digunakan untuk menjaga kualitas suatu jaringan nirkabel. QOS diperlukan sebagai sebuah metode untuk memenuhi kriteria pelayanan sistem bagi pengguna, yaitu confidentiality, integrity, dan availability. Beberapa aspek yang menjadi topik utama dalam QOS adalah failure and recovery mechanism, variable bandwidth, computing distribution, discovery mechanism, variable lantency, dan performance feedback. Wireless yang dibahas pada penelitian ini dititik beratkan pada jaringan seluler yang cenderung tidak reliable pada daerah tertentu. Oleh karena itu dibutuhkan sebuah mekanisme yang dapat mengatasi tidak stabilnya jaringan seluler tersebut. mplementasi mekanisme yang diterapkan pada penelitian ini adalah dengan menerapkan load switching pada jaringan seluler dengan menggunakan beberapa provider dan menerapkan teknologi Software Defined Network (SDN. Berdasarkan hasi uji coba dapat disimpulkan bahwa sistem yang dibuat pada penelitian ini dapat menerapkan wireless quality of service dan meningkatkan network reliability sebesar 65,29% dan 83,87% lebih baik untuk penggunaan tanpa waktu tunggu dan dengan waktu tunggu pada suatu jaringan  dinamis.

  20. Quantification of the value of C-reactive protein and its relationship with periodontal disease and cardiovascular risk in a sample of patients from the Facultad de Odontologia de la Universidad de Costa Rica: preliminary study

    International Nuclear Information System (INIS)

    Bermudez Mora, Gustavo; Gonzalez Leon, Yerlin; Jimenez Hernandez, Melissa; Padron Giraldino, Lieny; Rojas Villagra, Andrea

    2013-01-01

    Plasma P-CR concentration was measured and the value obtained was related to the presence and severity of periodontal and cardiovascular disease. A cross-sectional descriptive study was carried out, with the sample of 30 patients of different gender, age, type of periodontal disease and systemic condition. A serological test was performed on the subjects and analyzed quantitatively, using the measuring parameter of the Roche / Hitachi cobas 111 device, which automatically calculates the concentration of the P-CR in each sample. The results lack a statistically significant relationship of gender, age or degree of periodontal disease. The average value of P-CR was obtained from the study (3.72 mg / L) corresponds to a high risk of cardiovascular disease based on the parameters established by the American Heart Association. The only significant factor was the presence of associated systemic diseases in patients with high levels of P-CR, in comparison with those who suffer from some type of ailment. (author) [es

  1. Time-Motion Analysis of Four Automated Systems for the Detection of Chlamydia trachomatis and Neisseria gonorrhoeae by Nucleic Acid Amplification Testing.

    Science.gov (United States)

    Williams, James A; Eddleman, Laura; Pantone, Amy; Martinez, Regina; Young, Stephen; Van Der Pol, Barbara

    2014-08-01

    Next-generation diagnostics for Chlamydia trachomatis and Neisseria gonorrhoeae are available on semi- or fully-automated platforms. These systems require less hands-on time than older platforms and are user friendly. Four automated systems, the ABBOTT m2000 system, Becton Dickinson Viper System with XTR Technology, Gen-Probe Tigris DTS system, and Roche cobas 4800 system, were evaluated for total run time, hands-on time, and walk-away time. All of the systems evaluated in this time-motion study were able to complete a diagnostic test run within an 8-h work shift, instrument setup and operation were straightforward and uncomplicated, and walk-away time ranged from approximately 90 to 270 min in a head-to-head comparison of each system. All of the automated systems provide technical staff with increased time to perform other tasks during the run, offer easy expansion of the diagnostic test menu, and have the ability to increase specimen throughput. © 2013 Society for Laboratory Automation and Screening.

  2. Assessment of real-time PCR method for detection of EGFR mutation using both supernatant and cell pellet of malignant pleural effusion samples from non-small-cell lung cancer patients.

    Science.gov (United States)

    Shin, Saeam; Kim, Juwon; Kim, Yoonjung; Cho, Sun-Mi; Lee, Kyung-A

    2017-10-26

    EGFR mutation is an emerging biomarker for treatment selection in non-small-cell lung cancer (NSCLC) patients. However, optimal mutation detection is hindered by complications associated with the biopsy procedure, tumor heterogeneity and limited sensitivity of test methodology. In this study, we evaluated the diagnostic utility of real-time PCR using malignant pleural effusion samples. A total of 77 pleural fluid samples from 77 NSCLC patients were tested using the cobas EGFR mutation test (Roche Molecular Systems). Pleural fluid was centrifuged, and separated cell pellets and supernatants were tested in parallel. Results were compared with Sanger sequencing and/or peptide nucleic acid (PNA)-mediated PCR clamping of matched tumor tissue or pleural fluid samples. All samples showed valid real-time PCR results in one or more DNA samples extracted from cell pellets and supernatants. Compared with other molecular methods, the sensitivity of real-time PCR method was 100%. Concordance rate of real-time PCR and Sanger sequencing plus PNA-mediated PCR clamping was 98.7%. We have confirmed that real-time PCR using pleural fluid had a high concordance rate compared to conventional methods, with no failed samples. Our data demonstrated that the parallel real-time PCR testing using supernatant and cell pellet could offer reliable and robust surrogate strategy when tissue is not available.

  3. Teknik Migrasi Data Lintas DBMS dengan Menggunakan Metadata

    Directory of Open Access Journals (Sweden)

    Wahyu Hidayat

    2015-11-01

    Full Text Available Proses migrasi data biasanya dibutuhkan saat adanya perubahan sistem, format, atau tipe storage. Saat ini telah dikenal beberapa teknik dan kakas untuk melakukan migrasi data, misalnya CSV file, ODBC, SQLDump dan sebagainya. Sayangnya tidak semua teknik tersebut dapat diimplementasikan untuk migrasi data antara dua DBMS yang berbeda. Dalam penelitian ini dipaparkan sebuah teknik migrasi data yang dapat digunakan untuk migrasi data lintas DBMS. Teknik migrasi data yang dipaparkan memanfaatkan metadata yang ada di masing-masing DBMS. Proses migrasi data yang dipaparkan di sini melalui tiga tahap yaitu capture, convert dan construct. Sebuah prototype dibangun untuk menguji teknik migrasi data ini. Dengan menggunakan schema HR dilakukan uji coba migrasi data lintas DBMS antara Oracle dan MySQL. Dengan menggunakan teknik ini, migrasi data full-schema membutuhkan waktu rata-rata 20,43 detik dari DBMS Oracle ke MySQL dan 12,96 detik untuk skenario sebaliknya. Adapun untuk migrasi data parsial dibutuhkan waktu rata-rata 5,95 detik dari DBMS Oracle ke MySQL dan 2,19 detik untuk skenario sebaliknya.

  4. A comparative biochemical profile of some cyprinids fish in Dukan Lake, Kurdistan-Iraq

    Science.gov (United States)

    Azeez, Darya Mohammed; Mohammed, Sarbaz Ibrahim

    2017-09-01

    The present study was carried out to demonstrate the baseline values for some serum biochemical parameters for 64 adult freshwater fish including seven species belong to family Cyprinidae, have been collected in Dukan Lake, Kurdistan region-Iraq. Fishes were weighed, measured, and collect blood for blood chemistry. Serum biochemical analyses were determined using (Cobas C 311) full automatic chemical analyzer. The result of comparative study of serum biochemical parameters of all Cyprinidae species showed that serum glucose was (459.10±106.99 mg/dl) and direct bilirubin was (0.056±0.021mg/dl) in Barbus grypus, serum total protein (3.511± 0.0484gm/dl) and HDL (133.11±0.4231mg/dl) in Cyprinus carpio, serum cholesterol (338.33±43.923 mg/dl) and LDL (86.11±11.871mg/dl) in Carassius carassius, serum triglyceride (420.0±28.8mg/dl) and ALK (113.93±20.65U/L) in Chondrostoma regium, serum AST and serum ALT in Capoeta trutta, were significantly higher when compared to other species. In a conclusion there is variation in biochemical values among species of same family.

  5. Penokohan Film Sawung Kampret Karya Dwi Koendoro (Dwi Koen Dalam Perspektif Strukturalisme

    Directory of Open Access Journals (Sweden)

    Dyah Gayatri Puspitasari

    2015-03-01

    Full Text Available Tulisan ini berisi  kajian penokohan film Sawung Kampret yang diadaptasi dari komik Le- genda Sawung Kampret. Kajian ini menarik karena dua hal. Pertama, komik dan film adaptasi- nya diciptakan dan disutradarai oleh orang yang sama, yakni Dwi Koendoro. Kedua, kajian film yang diadaptasi dari komik Indonesia merupakan yang pertama. Melalui pendekatan struktural Ferdinand de Saussure, kajian berpusat pada relasi berbagai elemen penokohan yang membentuk keutuhan struktur narasi film. Didapat beberapa temuan menarik dimana unsur kelucuan pada penokohan film Sawung Kampret direlasikan dengan sejarah, hingga mampu membentuk narasi asosiatif yang mengusung nasionalisme berdasar nilai kemanusiaan, kebe- ragaman etnis dan budaya. Fakta tersebut menunjukkan bahwa melalui film Sawung Kampret, Dwi Koendoro mampu menciptakan perspektif struktur baru dengan melakukan kritik terha- dap struktur lama. Pasangan berlawanan (binary opposition dalam sistem lama coba diperta- nyakan. Sebagai hasil akhir maka dapat disimpulkan bahwa film Sawung Kampret merupakan film parodi sejarah yang sarat akan muatan pesan moral dan nasionalisme.       Kata kunci: film, adaptasi, penokohan, struktur, relasi

  6. Sistem Navigasi Indoor Menggunakan Sinyal Wi-Fi dan Kompas Digital Berbasis Integrasi dengan Smartphone untuk Studi Kasus pada Gedung Bertingkat

    Directory of Open Access Journals (Sweden)

    Alifa Ridho Musthafa

    2017-01-01

    Full Text Available Sistem navigasi menggunakan teknologi GPS saat ini sudah sangat maju ketika digunakan di luar ruangan. Namun, sistem tersebut masih kurang akurat ketika digunakan di dalam ruangan. Hal tersebut disebabkan karena GPS tidak bekerja dengan baik ketika berada di dalam ruangan. Di sisi lain, sudah ada sistem yang dapat menggantikan GPS untuk studi kasus di dalam ruangan, salah satunya yaitu sistem indoor localization berbasis Wi-fi. Memanfaatkan sistem indoor localization berbasis Wi-fi, dibuatlah sistem navigasi yang dapat digunakan di dalam ruangan. Sistem indoor localization digunakan untuk menentukan posisi pengguna. Setelah posisi pengguna diketahui, rute terbaik menuju tujuan pengguna ditentukan dengan bantuan algoritma A* dan kompas digital digunakan untuk menentukan arah kemana pengguna harus pergi. Studi kasus ini dilakukan di kampus Teknik Informatika ITS. Sistem indoor localization yang digunakan untuk menggantikan fungsi GPS dalam menentukan posisi mampu menghasilkan presentase rata-rata akurasi pendeteksian lokasi sebesar 88,953%. Sedangkan untuk uji coba pencarian rute, sistem indoor navigation dapat memberikan rute terpendek pada semua kasus percobaan.

  7. Prototype Sistem Multi-Telemetri Wireless untuk Mengukur Suhu Udara Berbasis Mikrokontroler ESP8266 pada Greenhouse

    Directory of Open Access Journals (Sweden)

    Hanum Shirotu Nida

    2017-07-01

    Full Text Available Telemetri wireless adalah proses pengukuran parameter suatu obyek yang hasil pengukurannya dikirimkan ke tempat lain melalui proses pengiriman data tanpa menggunakan kabel (wireless, sedangkan multi telemetri adalah gabungan dari beberapa telemeteri itu sendiri. Penelitian ini merancang prototype sistem multi-telemetri wireless untuk mengukur suhu udara dan kelembaban udara pada greenhouse dengan menggunakan sensor DHT11 dan data hasil dari pembacaan sensor dikirim dengan menggunakan modul WiFi ESP8266 ke server dengan menggunakan protokol HTTP. Dalam penelitian ini diuji nilai sensor DHT11, heap memory ESP8266, jarak atau jangkauan ESP8266, uji coba data missing handling dan kestabilan jaringan. Berdasarkan hasil pengujian diketahui bahwa sensor DHT11 memiliki rata-rata kesalahan ukur suhu 0.92 oC dan kelembaban 3.1%. Modul WiFi ESP8266 mampu menyimpan dan mengirim buffer hingga 100 data dan dapat melakukan pengiriman dalam jangkauan 50 meter. Data missing handling memanfaatkan buffer untuk menyimpan data selama server sedang tidak dapat diakses oleh sensor node agar data tidak hillang. Kestabilan pengiriman data atau koneksi sensor node dengan server dipengaruhi oleh jumlah access point yang sedang berkomunikasi disekitar access point server dengan menggunakan channel yang sama.

  8. Penggunaan Accelerometer dan Magnetometer pada Sistem Real Time Tracking Indoor Position untuk Studi Kasus Pada Gedung Teknik Informatika ITS

    Directory of Open Access Journals (Sweden)

    Dinar Winia Mahandhira

    2017-01-01

    Full Text Available Indoor Positioning System (IPS menggunakan perangkat mobile seperti smartphone masih menjadi permasalahan yang menantang. Seperti GPS yang tidak bekerja secara akurat di dalam gedung, IPS juga memiliki kelemahan yaitu sangat bergantung pada infrastruktur gedung seperti sinyal WiFi yang terkadang tidak tersebar secara merata di seluruh bagian gedung, sehingga membuat sistem ini terkadang tidak dapat bekerja secara optimal dan real time di setiap bagian gedung. Untuk itulah dikembangkan IPS yang menggunakan sensor gerak seperti accelerometer dan magnetometer sebagai tambahan untuk melakukan update posisi secara real time dengan mendeteksi langkah dan arah hadap pengguna saat berjalan. Pertama, posisi awal pengguna harus ditentukan terlebih dahulu misalnya menggunakan sinyal WiFi yang diproses melalui klasifikasi. Setelah posisi pengguna telah ditentukan, sistem akan mendeteksi pergerakan pengguna secara real time menggunakan sensor gerak. Uji coba dilakukan menggunakan studi kasus gedung Teknik Informatika lantai tiga. Hasil yang diberikan pada saat pengujian memberikan performa yang cukup baik dengan rata-rata persentase akurasi untuk pendeteksian langkah dan estimasi arah hadap pengguna adalah sebesar 94,8% dan 94,48%.

  9. Hepatitis C virus genotyping of organ donor samples to aid in transplantation of HCV-positive organs.

    Science.gov (United States)

    Gentile, Caren; Van Deerlin, Vivianna M; Goldberg, David S; Reese, Peter P; Hasz, Richard D; Abt, Peter; Blumberg, Emily; Farooqi, Midhat S

    2018-02-01

    Given the availability of new highly efficacious anti-HCV therapies, some clinicians have advocated for wider use of kidneys from hepatitis C virus-positive (HCV+) donors, including transplanting them into HCV-negative recipients. As treatment regimens for HCV are commonly guided by genotype, pretransplant HCV genotyping of tissue donors would be beneficial. To our knowledge, donor HCV genotyping has never been reported. We retrieved archived frozen plasma samples for 17 previous organ donors through a local organ procurement organization. We performed HCV genotyping using the eSensor HCVg Direct Test (GenMark Diagnostics) and also by Sanger sequencing, for confirmation (Retrogen). In addition, viral loads were measured using the COBAS AmpliPrep/TaqMan system (Roche Diagnostics). We found that most of the samples (n = 14) were HCV Genotype 1a with the remainder being Genotype 2b (n = 1) or Genotype 3 (n = 2). All genotyping results were concordant with Sanger sequencing. The average HCV viral load in the sample group was ~ 1.6 million IU/mL (range: ~16 000 IU/mL to 7 million IU/mL). We demonstrate that viral RNA from organ donor plasma can be successfully genotyped for HCV. This ability suggests that transplantation of HCV+ kidneys into HCV-negative recipients, followed by genotype-guided antiviral therapy, could be feasible. © 2017 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.

  10. Diagnostic effectiveness of immunoassays systems for hepatitis C virus in samples from multi-transfusion patients

    International Nuclear Information System (INIS)

    Rivero Jimenez, Rene A; Merlin Linares, Julio C; Blanco de Armas, Madelin; Navea Leyva, Leonor M

    2009-01-01

    Hepatitis C virus (CHV) blood-transmission is a health problem in Cuba and in the world. Some types of diagnostic immunoassays have been developed for the blood certification and in general have a high diagnostic sensitivity and specificity in healthy donors. However, its behavior in samples from multi-transfusion patients could by less effective. To assess the diagnostic effectiveness of the UMELISA HCV third generation Cuban immunoassay (TecnoSUMA, S.A. La Habana), Cuba) in samples from multi-transfusion patients, in parallel, 335 sera from patients were processed by UBI HCV EIA 4.0 (United Biomedical, EE.UU) and UMELISA HCV third generation, and the samples with incongruous results were verified by PCR COBAS AmpliScreen HCV Test, v2 system (Roche, EE.UU.) Comparing the UMELISA HCV third generation system with the UBI HCV EIA 4.0 it was achieved a Sd of 95,8% CI(95%): 92,5-99,15 and a Ed of 100% CI (95%): 99,7-100, with IY: 0,96 (0,93-0,99) with k: 0,0582 ID (95%): 0,9276-0,9888, p = 0,000. Both immunoassay systems were satisfactory for immunodiagnosis of multi-transfusion patients

  11. Development of a digital droplet PCR assay to measure HBV DNA in patients receiving long-term TDF treatment.

    Science.gov (United States)

    Liu, Yang; Cathcart, Andrea L; Delaney, William E; Kitrinos, Kathryn M

    2017-11-01

    The COBAS TaqMan assay has a lower limit of quantification (LLOQ) of 169 HBV copies/mL and a lower limit of detection (LLOD) of 58 copies/mL. HBV DNA below the TaqMan LLOQ is classified as target not detected (TND) (HBV DNA to 8 copies/mL. HBV DNA levels in plasma from patients with or without HBsAg seroconversion were assessed by ddPCR. For patients who did not achieve HBsAg seroconversion, the majority of TD samples (33/58, 57%) were HBV DNA positive by ddPCR while (10/37, 27%) of TND samples were positive. In contrast, for patients who achieved HBsAg seroconversion, HBV DNA was rarely detected by ddPCR after HBsAg seroconversion (1/28, 3.6%). ddPCR is a sensitive method to evaluate low-level viral replication in plasma samples. Frequent detection of HBV DNA by ddPCR among patients who did not achieve HBsAg seroconversion suggests new agents may be needed to suppress low levels of replicating HBV. Copyright © 2017. Published by Elsevier B.V.

  12. IMPLEMENTASI METODE RETINEX UNTUK PENCERAHAN CITRA

    Directory of Open Access Journals (Sweden)

    Murinto Murinto

    2009-07-01

    Full Text Available Data atau informasi tidak hanya disajikan dalam bentuk teks, tetapi juga dapat berupa gambar, audio, dan video. Citra/gambar mempunyai karakteristik yang tidak dimiliki oleh teks, yaitu citra kaya dengan informasi. Dewasa ini penggunaan citra digital semakin meningkat karena kelebihan-kelebihan yang dimiliki oleh citra digital tersebut, antara lain kemudahan dalam mendapatkan gambar, memperbanyak gambar dan pengolahan gambar. Situasi dan kondisi pada saat pengambilan citra digital sangat berpengaruh terhadap hasil citra digital yang diperoleh. Kurangnya intensitas cahaya pada saat pengambilan citra dapat menyebabkan kualitas citra menjadi tidak baik, seperti citra menjadi gelap atau perubahan warna dari gambar. Perlu suatu metode untuk memperbaiki kualitas citra dengan mempertahankan warna asli citra. Penelitian ini menggunakan metode Retinex untuk meningkatkan kecerahan citra. Jenis gambar yang digunakan berekstensi *.jpg berformat 24 bit dengan ukuran pixel yang tidak dibatasi. Citra tersebut kemudian dimasukan ke dalam program lalu diproses dengan menggunakan metode Retinex. Adapun parameter yang digunakan adalah citra hasil, histogram, dan signal-to-noise (SNR. Pengujian dilakukan dengan metode White Box Tes dan Alpha Test. Penelitian yang dilakukan menghasilkan suatu aplikasi pengolahan citra untuk meningkatkan kecerahan Citra Menggunakan Metode Retinex” yang dapat bekerja untuk mencerahkan citra. Peningkatan kecerahan citra dengan menggunakan metode retinex menghasilkan citra yang lebih cerah, nilai SNR yang lebih tinggi dan histogram dengan nilai intensitas pixel yang tinggi dan terdistribusi secara merata. Hasil uji coba menunjukan bahwa aplikasi ini dapat meningkatkan kecerahan dan kualitas citra menjadi lebih baik. Kata Kunci: Pengolahan Citra, Retinex, Histogram, SNR. 

  13. IMPLEMENTASI METODE RETINEX UNTUK PENCERAHAN CITRA

    Directory of Open Access Journals (Sweden)

    Murinto Kusno

    2012-05-01

    Full Text Available Data atau informasi tidak hanya disajikan dalam bentuk teks, tetapi juga dapat berupa gambar, audio, dan video. Citra/gambar mempunyai karakteristik yang tidak dimiliki oleh teks, yaitu citra kaya dengan informasi. Dewasa ini penggunaan citra digital semakin meningkat karena kelebihan-kelebihan yang dimiliki oleh citra digital tersebut, antara lain kemudahan dalam mendapatkan gambar, memperbanyak gambar dan pengolahan gambar. Situasi dan kondisi pada saat pengambilan citra digital sangat berpengaruh terhadap hasil citra digital yang diperoleh. Kurangnya intensitas cahaya pada saat pengambilan citra dapat menyebabkan kualitas citra menjadi tidak baik, seperti citra menjadi gelap atau perubahan warna dari gambar. Perlu suatu metode untuk memperbaiki kualitas citra dengan mempertahankan warna asli citra. Penelitian ini menggunakan metode Retinex untuk meningkatkan kecerahan citra. Jenis gambar yang digunakan berekstensi *.jpg berformat 24 bit dengan ukuran pixel yang tidak dibatasi. Citra tersebut kemudian dimasukan ke dalam program lalu diproses dengan menggunakan metode Retinex. Adapun parameter yang digunakan adalah citra hasil, histogram, dan signal-to-noise (SNR. Pengujian dilakukan dengan metode White Box Tes dan Alpha Test. Penelitian yang dilakukan menghasilkan suatu aplikasi pengolahan citra untuk meningkatkan kecerahan  Citra Menggunakan Metode Retinex” yang dapat bekerja untuk mencerahkan citra. Peningkatan kecerahan citra dengan menggunakan metode retinex menghasilkan citra yang lebih cerah, nilai SNR yang lebih tinggi dan histogram dengan nilai intensitas pixel yang tinggi dan terdistribusi secara merata. Hasil uji coba menunjukan bahwa aplikasi ini dapat meningkatkan kecerahan dan kualitas citra menjadi lebih baik

  14. PENGEMBANGAN PERANGKAT PEMBELAJARAN KOMPETENSI SULIT MATEMATIKA SMA DI RIAU

    Directory of Open Access Journals (Sweden)

    Ummi Aisyah

    2014-05-01

    Full Text Available Tujuan penelitian ini adalah untuk menghasilkan perangkat pembelajaran kompetensi sulit matematika SMA di Provinsi Riau yang berkualitas baik/layak yaitu valid, praktis, dan efektif. Penelitian ini merupakan penelitian pengembangan yang mengembangkan perangkat pembelajaran kompetensi sulit matematika SMA dengan menggunakan model pengembangan 4-D yang dikembangkan oleh Thiagarajan, Semmel & Semmel yang telah dimodifikasi sehingga hanya memuat tahap pen-definisian, perancangan, dan pengembangan. Penelitian ini menghasilkan perangkat pembelajaran kompetensi sulit matematika SMA yang meliputi silabus, rencana pelaksanaan pembelajaran (RPP, lembar kegiatan siswa (LKS, dan instrumen tes. Hasil validasi menunjukkan bahwa silabus, RPP, LKS yang dikembangkan memiliki kategori sangat valid untuk masing-masing silabus, RPP, LKS, dan test instrument. Hasil uji coba lapangan menunjukkan bahwa perangkat yang dikembangkan praktis dan efektif. Kepraktisan mencapai hasil sangat baik ditinjau dari penilaian guru dan siswa. Keefektifan ditinjau dari ketuntasan belajar siswa dan hasil observasi keterlaksanaan pembelajaran. Secara klasikal ketuntasan belajar mencapai 84,38%. Secara keseluruhan, hasil penelitian menunjukkan bahwa perangkat pembelajaran yang dikembangkan adalah layak untuk digunakan. Kata Kunci: pengembangan, perangkat pembelajaran, kompetensi sulit matematika

  15. STRATEGI PEMBERDAYAAN EKONOMI KOMUNITAS WARIA MELALUI LIFE SKILL EDUCATION

    Directory of Open Access Journals (Sweden)

    Rr. Indah Mustikawati

    2013-04-01

    Full Text Available Abstrak: Strategi Pemberdayaan Ekonomi Komunitas Waria Melalui Life Skill Education. Penelitian ini bertujuan untuk mengetahui penurunan jumlah waria yang “turun ke jalan” yang berprofesi sebagai Pekerja Seks Komersial melalui life skill education dan pengaruhnya terhadap jumlah pendapatan yang diterima waria dari sumber yang “halal”, serta penurunan kemiskinan komunitas waria di Kotamadya Yogyakarta. Penelitian ini menggunakan metode Research and Development dengan empat tahapan, yaitu studi pendahuluan pengembangan, penyusunan desain, uji coba model, dan evaluasi hasil pengembangan model life skill education. Keempat tahapan tersebut dilakukan untuk menemukan model yang sesuai untuk strategi pemberdayaan ekonomi bagi komunitas waria. Hasil penelitian menunjukkan bahwa semua waria menginginkan untuk memiliki kompetensi tambahan yang dapat digunakan untuk merintis usaha sesuai dengan peminatan mereka, dan menambah penghasilan mereka, dan sebagai bekal di hari tua.   Kata Kunci: Strategi Pemberdayaan Ekonomi, Pengentasan kemiskinan, Waria   Abstract: Economy Empowerment Strategy Trough Life skill Education as Poverty Reduction of Transgender Community. Aims of this research are to determine reduction number of transgender working as prostitute through life skill education and the impact of that reduction on their halal income, to examine poverty reduction among transgender communities in Yogyakarta. This study uses four-steps of research and development approach, namely preliminary study development, design preparation, model test, life skill education model evaluations. The results show that all of the transgender involved in this study yearn for having additional skill to set new business up to increase their income.   Keywords: economic empowerment strategy, poverty eradication, transgender

  16. Biological Variation and Reference Change Value Data for Serum Neuron-Specific Enolase in a Turkish Population.

    Science.gov (United States)

    Matyar, Selcuk; Goruroglu Ozturk, Ozlem; Ziyanoglu Karacor, Esin; Yuzbasioglu Ariyurek, Sedefgul; Sahin, Gulhan; Kibar, Filiz; Yaman, Akgun; Inal, Tamer

    2016-11-01

    Neuron-specific enolase (NSE) is a recognized biomarker for the assessment of cerebral injury in neurological disorders. This study aims to report a definitive assessment of the biological variation (BV) components of this biomarker, including within-subject BV (CVI), between-subject BV (CVG), index of individuality (II), and reference change value (RCV), in a cohort of Turkish participants using an experimental protocol. Six blood specimens were collected from each of the 13 apparently healthy volunteers (seven women, six men; ranging in age from 23 to 36) on the same day, every 2 weeks for 2 months. Serum specimens were stored at -20°C until analysis. Neuron-specific enolase levels were evaluated in serum samples using an electrochemiluminescence (ECLIA) immunoassay kit with a Roche Cobas e 411 auto-analyser. ANOVA test was used to calculate the variations. The CVI and CVG for NSE were 21.5% and 28.8%, respectively. Analytical variation (CVA) was calculated as 10.2%. Additionally, II and RCV were calculated as 0.74 and 66% (95% confident interval, CI), respectively. As the performance index (PI) was found to be less than 2 (PI = 0.95), it is concluded that the NSE measurements have a desirable performance for analytical imprecision. Since the II was found to be less than 1 (II: 0.74), the reference values will be of little use. Thus, RCV would provide better information for deciding whether a significant change has occurred. © 2016 Wiley Periodicals, Inc.

  17. Chlamydia trachomatis infections in Greece: first prevalence study using nucleic acid amplification tests.

    Science.gov (United States)

    Levidiotou, S; Vrioni, G; Papadogeorgaki, H; Avdeliodi, K; Kada, H; Kaparos, G; Kouskouni, E; Fragouli, E; Legakis, N J

    2005-03-01

    The present retrospective study was initiated to determine the prevalence of Chlamydia trachomatis and to assess the risk factors for infection in adult women and men presenting to general practitioners, gynecologists, dermatologists, and family-planning centers in Greece. The study was carried out in four different Greek hospital centers using highly sensitive nucleic acid amplification techniques. Altogether, 16,834 women and 1,035 men were enrolled from October 1998 to April 2004. Two types of specimens were collected from each patient: cervical swabs from women, urethral swabs from men, and first-catch urine from women and men. All specimens were examined with the Cobas Amplicor C. trachomatis polymerase chain reaction assay (Roche Molecular Systems, Branchburg, NJ, USA) or the LC x C. trachomatis ligase chain reaction assay (Abbott Laboratories, Abbott Park, IL, USA). Demographic and behavioral data were collected by clinicians using a standardized questionnaire. A total of 704 (3.9%) patients were infected with C. trachomatis. The prevalence among female patients was 3.5% and that among male patients 11.2%. Among infected patients, 88% were under 30 years of age, 71% reported more than one sexual partner, and 91% reported a new sexual partner within the last year. In conclusion, the prevalence of C. trachomatis infection in Greece is low. Young age and new and multiple sexual partners within the last year were factors consistently associated with an increased risk of chlamydial infection.

  18. PERANCANGAN APLIKASI SISTEM REPAIR SCHEDULE PADA KAPAL PENYEBERANGAN MERAK-BAKAUHENI BERBASIS WEB MENURUT ATURAN BIRO KLASIFIKASI INDONESIA

    Directory of Open Access Journals (Sweden)

    Samuel Samuel

    2014-10-01

    Full Text Available Reparasi kapal (docking merupakan keharusan guna menjamin sertifikat kelaikan maupun keselamatan. Minimal setiap setahun sekali kapal harus docking. Saat ini di pelabuhan Merak–Bakauheni terjadi antrian yang panjang terutama pada saat high season karena kurangnya armada kapal yang disebabkan jadwal docking pada high season dan kurangnya komunikasi dan pengawasan docking kapal tersebut. Untuk menghindari hal tersebut, peneliti merancang dan membuat sistem informasi docking schedule berbasis web yang dilengkapi dengan reminder dalam bentuk email dan sms untuk memudahkan PT. ASDP sebagai pengelola transportasi di pelabuhan merak-bakauheni dalam mengatur jadwal dan melakukan pengawasan pada kapal. Pengembangan aplikasi dimulai dengan identifikasi kebutuhan sistem yang menghasilkan desain sistem, yang didefinisikan dengan Data Flow Diagram (DFD, Entity Relationship Diagram (ERD, Use case Diagram. Implementasi aplikasi berdasarkan desain sistem diterapkan pada lingkungan web dengan MySQL dan PHP dan sms gateway. Sistem penjadwalan reparasi dan survey berbasis web dengan pesan pengingat melalui Email dan SMS ini mampu  memberikan informasi jadwal repair dan survey dengan cepat dan dapat diakses kapanpun dan dimanapun dan dari hasil uji coba sistem, menunjukkan bahwa aplikasi yang dibangun telah dapat memenuhi semua kebutuhan sistem pengguna.

  19. DISAIN SIMULATOR AUTOMOTIVE AIR CONDITIONING UNTUK MENINGKATKAN KOMPETENSI MAHASISWA

    Directory of Open Access Journals (Sweden)

    Kamin Sumardi

    2015-08-01

    Full Text Available Perkembangan teknologi automotive air conditioning dan aplikasinya sangat cepat, salah satunya dengan menerapkan green technology. Penerapan green technology pada teknologi air conditioning, karena masih menggunakan refrigeran yang mengandung unsur kimia yang merusak lapisan ozon dan pemanasan global. Alih teknologi bidang air conditioning yang ramah lingkungan, belum dibarengi dengan ketersediaan tenaga kerja pada tingkat SMK dan perguruan tinggi yang memadai, baik kuantitas maupun kompetensinya. Pada level SMK dan perguruan tinggi, kompetensi akademik dan vokasional bidang automotive air conditioning harus terus ditingkatkan dan diperbaharui sesuai dengan perkembangan teknologinya. Penelitian ini bertujuan untuk menghasilkan simulator automotive air conditioner dan model pembelajaran tata udara pada otomotif berwawasan teknologi ramah lingkungan. Penelitian menggunakan metode research and development dengan langkah-langkah: studi pendahuluan, perencanaan, pengembangan melalui uji coba simulator, validasi, dan produk akhir. Simulator dibuat sesuai dengan kondisi di dunia kerja agar tidak terjadi miskonsepsi dan mala-praktek automotive air conditioning. Simulator ini dibuat secara kompak dan mobile atau dapat dipindah dan dibawa. Model pembelajaran disesuaikan dengan kebutuhan kompetensi yang dipersyaratkan. Hasil penelitian menunjukkan bahwa dengan bantuan simulator automotive air conditioner dan model pembelajaran yang tepat mahasiswa mampu menyerap konsep dan praktek lebih cepat 85%. Hasil belajar pada ranah afektif, kognitif, psikomotor dan kompetensi meningkat secara signifikan.

  20. PENJUALAN MOBIL BERBASIS WEB DAN MANAJEMEN DATA PEMBAYARAN DI SHOWROOM MOBIL XYZ

    Directory of Open Access Journals (Sweden)

    Joko Lianto Buliali

    2005-01-01

    Full Text Available The purpose of this research is to build a virtual showroom for a car showroom company which allows company to do marketing, selling, and providing payment information through Web. The system is developed based on the requirements of the users and current selling procedure in the showroom. From the investigation result, analysis, design, and implementation are carried out. Testing on the system shows that the system has fulfilled all the requirements needed by the users of the of the system Abstract in Bahasa Indonesia : Penelitian ini bertujuan untuk mengembangkan suatu sistem showroom virtual pada suatu showroom mobil sehingga dapat dilakukan pemasaran dan penjualan mobil disertai dengan informasi pembayaran customernya melalui Web. Sistem dikembangkan berdasarkan kebutuhan pengguna terhadap sistem dan prosedur penjualan pada showroom tersebut saat ini. Dari hasil tersebut, dilakukan analisis, desain, dan implementasi sistem yang dibutuhkan. Uji coba terhadap sistem yang dibuat menunjukkan bahwa sistem yang dibuat sudah memiliki seluruh fasilitas yang dibutuhkan pengguna sistem. Kata kunci: showroom virtual, pemasaran, penjualan mobil.

  1. Biochemically Investigation of the Effects of Nettle Seed Herbal Mixture on Alcohol Damaged Liver

    Directory of Open Access Journals (Sweden)

    A. ÇELİK

    2014-06-01

    Full Text Available It was experimentally investigated in this research how protective Nettle Seed Herbal Mixture is against ethanol which causes oxidative stress in rats and causes toxic effects in the liver with chronic use. 20 4-month-old female Wistar male rats were used in the study. All rats in the study were fed with normal pellet Mouse food during the experiment. 10 week application was done by dividing the rats into four equal groups. Application method is orally drinking method. First group is the control group. The second group is the alcohol group. This group was given 30% ethanol in order to cause chronic alcoholisms. The third group was the alcohol+ Nettle Seed Herbal Mixture group and the rats in this group were given liquid, which was 30% ethanol,+ Nettle Seed Herbal Mixture extract. Fourth group was Nettle Seed Herbal Mixture extract group and the rats in this group were given liquid, which was Nettle Seed Herbal Mixture extract. At the end of ten weeks, within the first 24 hours, blood species were obtained from the animals under anesthesia using appropriate techniques. Serum ALT and AST values of the obtained blood samples were studied by enzymatic methods in "Roche Cobas 6000" device.. Biochemically ALT and AST enzyme values and statistical analysis with SPSS programe were done. No significant difference was found between these four groups at the end of the analysis because p value was bigger than 0,005.

  2. The soluble receptor for vitamin B12 uptake (sCD320) increases during pregnancy and occurs in higher concentration in urine than in serum

    DEFF Research Database (Denmark)

    Abuyaman, Omar; Andreasen, Birgitte H; Kronborg, Camilla

    2013-01-01

    BACKGROUND: Cellular uptake of vitamin B12 (B12) demands binding of the vitamin to transcobalamin (TC) and recognition of TC-B12 (holoTC) by the receptor CD320, a receptor expressed in high quantities on human placenta. We have identified a soluble form of CD320 (sCD320) in serum and here we...... gestational weeks 17-41. sCD320, holoTC, total TC and complex formation between holoTC and sCD320 were measured by in-house ELISA methods, while creatinine was measured on the automatic platform Cobas 6000. Size exclusion chromatography was performed on a Superdex 200 column. RESULTS: Median (range) of serum...... was around two fold higher than in serum. Urinary sCD320/creatinine ratio correlated with serum sCD320 and reached a peak median level of 53 (30-101) pmol/mmol creatinine (week 35). sCD320 present in serum and urine showed the same elution pattern upon size exclusion chromatography. CONCLUSION: We report...

  3. PENINGKATAN KECERDASAN COMPUTER PLAYER PADA GAME PERTARUNGAN BERBASIS K-NEAREST NEIGHBOR BERBOBOT

    Directory of Open Access Journals (Sweden)

    M Ihsan Alfani Putera

    2018-02-01

    Full Text Available Salah satu teknologi komputer yang berkembang dan perubahannya cukup pesat adalah game. Tujuan dibuatnya game adalah sebagai sarana hiburan dan memberikan kesenangan bagi penggunanya. Contoh elemen dalam pembuatan game yang penting adalah adanya tantangan yang seimbang sesuai level. Dalam hal ini, adanya kecerdasan buatan atau AI merupakan salah satu unsur yang diperlukan dalam pembentukan game. Penggunaan AI yang tidak beradaptasi ke strategi lawan akan  mudah diprediksi dan repetitif. Jika AI terlalu pintar maka player akan kesulitan dalam memainkan game tersebut. Dengan keadaan seperti itu akan menurunkan tingkat enjoyment dari pemain. Oleh karena itu, dibutuhkan suatu metode AI yang dapat beradaptasi dengan kemampuan dari player yang bermain. Sehingga tingkat kesulitan yang dihadapi dapat mengikuti kemampuan pemainnya dan pengalaman enjoyment ketika bermain game terus terjaga. Pada penelitian sebelumnya, metode AI yang sering digunakan pada game berjenis pertarungan adalah K-NN. Namun metode tersebut menganggap semua atribut dalam game adalah sama sehingga hal ini mempengaruhi hasil learning AI menjadi kurang optimal.Penelitian ini mengusulkan metode untuk AI dengan menggunakan metode K-NN berbobot pada game berjenis pertarungan. Dimana, pembobotan tersebut dilakukan untuk memberikan pengaruh setiap atribut dengan bobot disesuaikan dengan aksi player. Dari hasil evaluasi yang dilakukan terhadap 50 kali pertandingan pada 3 skenario uji coba, metode yang diusulkan yaitu K-NN berbobot mampu menghasilkan tingkat kecerdasan AI dengan akurasi sebesar 51%. Sedangkan, metode sebelumnya yaitu K-NN tanpa bobot hanya menghasilkan tingkat kecerdasan AI sebesar 38% dan metode random menghasilkan tingkat kecerdasan AI sebesar 25%.

  4. Determination of Urine Albumin by New Simple High-Performance Liquid Chromatography Method.

    Science.gov (United States)

    Klapkova, Eva; Fortova, Magdalena; Prusa, Richard; Moravcova, Libuse; Kotaska, Karel

    2016-11-01

    A simple high-performance liquid chromatography (HPLC) method was developed for the determination of albumin in patients' urine samples without coeluting proteins and was compared with the immunoturbidimetric determination of albumin. Urine albumin is important biomarker in diabetic patients, but part of it is immuno-nonreactive. Albumin was determined by high-performance liquid chromatography (HPLC), UV detection at 280 nm, Zorbax 300SB-C3 column. Immunoturbidimetric analysis was performed using commercial kit on automatic biochemistry analyzer COBAS INTEGRA ® 400, Roche Diagnostics GmbH, Manheim, Germany. The HLPC method was fully validated. No significant interference with other proteins (transferrin, α-1-acid glycoprotein, α-1-antichymotrypsin, antitrypsin, hemopexin) was found. The results from 301 urine samples were compared with immunochemical determination. We found a statistically significant difference between these methods (P = 0.0001, Mann-Whitney test). New simple HPLC method was developed for the determination of urine albumin without coeluting proteins. Our data indicate that the HPLC method is highly specific and more sensitive than immunoturbidimetry. © 2016 Wiley Periodicals, Inc.

  5. Penerapan Case-Based Reasoning Pada Sistem Cerdas Untuk Pendeteksian dan Penanganan Dini Penyakit Sapi

    Directory of Open Access Journals (Sweden)

    Irlando Moggi Prakoso

    2012-09-01

    Full Text Available Penyakit sapi memberikan dampak yang signifikan terhadap penurunan produksi daging bagi para peternak sapi. Untuk meminimalisir dampak dari penyakit perlu dilakukan pendeteksian dan penanganan dini untuk mencegah tingginya kerugian yang terjadi. Sistem cerdas dapat memudahkan peternak sapi untuk mendiagnosa secara mandiri. Penelitian sebelumnya menghasilkan sistem cerdas  untuk mendiagnosa penyakit sapi menggunakan algoritma Backpropagation Artificial neural Network(ANN. Namun ANN bersifat black-box karena kita tidak dapat melihat informasi yang mendasari hasil diagnosa. Tugas akhir ini memiliki tujuan untuk menjawab permasalahan tersebut, yakni dengan membuat sistem cerdas berbasis Cased-Based Reasoning(CBR untuk menyempurnakan sistem cerdas yang sebelumnya dibuat menggunakan ANN. CBR memberikan hasil diagnosa berdasarkan permasalahan terdahulu yang dapat direvisi untuk memecahkan permasalahan terbaru. Dari ketiga uji coba dengan case didalam case memory(skenario 1, diluar case memory(skenario 2, dan gejala parsial dari case memory(skenario 3 mendapatkan hasil yang baik dengan nilai precision 100% dan 95.83% untuk skenario 1 dan 3.   Serta nilai precision yang memang kurang baik untuk skenario 2 sebesar 59.31%. Dengan demikian, sistem cerdas ini dapat memberikan hasil diagnosa yang akurat dan memudahkan peternak sapi dalam mendiagnosa secara mandiri.

  6. OPTIMASI DAYA MESIN DAN KONSUMSI BAHAN BAKAR MESIN TOYOTA SERI 5K MELALUI PENGGUNAAN PENGAPIAN BOOSTER

    Directory of Open Access Journals (Sweden)

    Mardani Ali Sera

    2015-10-01

    Full Text Available Proses pembakaran adalah proses secara fisik yang terjadi di dalam silinder. Proses pembakaran dimulai pada saat busi memercikkan bunga api hingga terjadi proses pembakaran. Dalam penelitian ini digunakan metode eksperimen yaitu membandingkan daya dan konsumsi bahan bakar antara pengapian standar dengan pengapian menggunakan booster. Berdasarkan data hasil uji coba perbandingan antara sistem pengapian standar dengan pengapian yang menggunakan booster dengan objek penelitian mesin Toyota seri 5K diketahui adanya kenaikan 2.61% daya menjadi 27.723 kW dari 27.17 kW antara sistem pengapian standar dengan pengapian yang menggunakan booster pada putaran mesin 2400 rpm. Sedangkan prosentase kenaikan rerata daya sebesar 2.79 %. Penggunaan booster juga membuat penggunaan konsumsi bahan bakar spesifik (sfc antara sistem pengapian standar dengan pengapian yang menggunakan booster. Prosentase penurunan rerata konsumsi bahan bakar spesifik (sfc sebesar 6.99%. Pada sistem pengapian yang menggunakan booster, sfc minimum sebesar 0.219 kg/kWh pada putaran mesin 2200 rpm. Pada pengapian standar sfc minimum sebesar 0.231 kg/kWh pada putaran mesin 2400 rpm.

  7. Strong negative interference of ethamsylate (Dicynone®) in serum creatinine quantification via enzymatic assay using Trinder reaction.

    Science.gov (United States)

    Wiewiorka, Ondrej; Dastych, Milan; Čermáková, Zdenka

    2013-08-01

    With discrepancies encountered as early as the verification of enzymatic method for quantification of serum creatinine, our research pointed to a later confirmed interference caused by a compound called ethamsylate present in the commonly used antihemorrhagic drug Dicynone. We measured concentrations of creatinine of 10 patients with blood taken before and 15 minutes after the intravenous administration of a 500 mg dose of Dicynone. The creatinine concentration was determined using Jaffe method and enzymatic method that utilize Trinder reaction (Roche) in analyzer Cobas c 501 (Roche AG, Basel, Switzerland). We also monitored concentration of blood creatinine in three patients before and 15 minutes after application of Dicynone (500 mg i.v.) and in the following 6th, 12th, 18th, and 24th hours. We discovered a significant negative bias in creatinine results using enzymatic assay with Trinder reaction in blood taken 15 min after i.v. application of 500 mg Dicynone to patients compared to their pre-application values (average decrease of 47%). Unlike this, the results of compensated Jaffe method yielded steady results in all samples (average deviation 0.6% from original values). However, 12 h after the drug administration comparable results were seen as before the administration. Considering the strong negative interference of ethamsylate in enzymatic assay using Trinder reaction for creatinine quantification, blood from patients with prescribed Dicynone should be taken at least 12 h after the last application of the drug for obtaining the correct creatinine values.

  8. Ethamsylate (Dicynone) interference in determination of serum creatinine, uric acid, triglycerides, and cholesterol in assays involving the Trinder reaction; in vivo and in vitro.

    Science.gov (United States)

    Dastych, Milan; Wiewiorka, Ondrej; Benovská, Miroslava

    2014-01-01

    The aim of our research was the quantification of interfering properties of the haemostatic drug Dicynone (ethamsylate) in serum creatinine, uric acid, cholesterol, and triglyceride assays using the Trinder reaction. Blood from patients was collected before and 15 minutes after administration of 500 mg Dicynone dose i.v. and the above mentioned analytes were quantified using Roche assays (Cobas 8000). In our in vitro experiment, we measured concentrations of the analytes in pooled serum aliquots with final concentrations of Dicynone additions 0, 30, 60, 150, and 300 mg/L. Aliquots with 60 mg/L Dicynone were also measured at 2, 6, and 8 hours after initial measurement when stored in 22 degrees C and 4 degrees C for comparison. Concentrations of the measured analytes in samples from patients administered with a 500 mg dose of Dicynone were lower in all cases (n = 10) when compared to values in samples taken immediately before treatment. The in vitro samples showed that considerable negative interference occurred even with the low concentrations of Dicynone additions (30 and 60 mg/L), showing the strongest negative interference in creatinine values, followed by uric acid, triglycerides, and cholesterol. Using in vitro samples, we showed strong time and temperature dependence on Dicynone interference. We found and proved significant negative interference of the drug Dicynone (ethamsylate) in the clinical analysis of blood using in vivo and in vitro experiments. Furthermore, we observed a change of this effect in serum matrix over time and at different storage temperatures.

  9. DEKOMPOSISI MORFOLOGI BENTUK BINER DUA DIMENSI MENJADI POLIGON KONVEKS DENGAN PENDEKATAN HEURISTIK

    Directory of Open Access Journals (Sweden)

    Nanik Suciati

    2006-07-01

    Full Text Available Dalam pengolahan citra digital dan pengenalan pola, representasi bentuk merupakan masalah yang paling mendasar. Sebuah skema representasi bentuk yang bagus dapat memberi kemudahan pada analisis bentuk untuk dikembangkan pada berbagai macam pencocokan bentuk atau tugas pengenalan.Pada Penelitian ini, dirancang perangkat lunak untuk mendekomposisi bentuk biner dua dimensi menjadi poligon konveks dengan menggunakan teori morfologi dan pendekatan secara heuristik. Proses dekomposisi dilakukan dengan menentukan aproksimasi konveks dari citra yang diolah. Penentuan aproksimasi konveks didapat dari penyusutan bentuk untuk mengambil bentuk primitif dasar, kemudian mengembangkan kembali bentuk tersebut sehingga menjadi poligon konveks. Hasil dari proses ini berupa komponen konveks dan representasinya.Hasil uji coba membuktikan bahwa komponen konveks yang dihasilkan dari bentuk dengan tepi yang tidak banyak lekukan akan lebih sedikit daripada bentuk dengan banyak lekukan pada tepinya. Selain itu jumlah komponen konveks yang dibutuhkan untuk menghasilkan pendekatan bentuk asal, lebih sedikit bila dibandingkan dengan algoritma Wang, algoritma Pitas dan Skeleton Transform.Kata Kunci : bentuk biner, poligon konveks, morfologi, komponen konveks.

  10. Teknologi Proses Pembuatan Molecular Sieve TiZA Untuk Pemekatan Asam Nitrat

    Directory of Open Access Journals (Sweden)

    Ali Nurdin

    2017-10-01

    Full Text Available Molecular sieve zeolit dapat memurnikan campuran larutan yang bersifat azeotrop yang tidak bisa dilakukan menggunakan metode distilasi biasa. Namun, masih memiliki kelemahan dalam half life time molecular sieve tersebut, khususnya stabilitas bahan apabila digunakan pada larutan yang bersifat korosif seperti larutan asam atau basa. Pada penelitian ini telah  dilakukan pembuatan molecular sieve zeolit A yang dimodifikasi  dengan penambahan 10% titanium. Molecular sieve titanium - zeolit A (TiZA dibuat dengan dengan metode hidrotermal pada temperatur 110 °C dan kalsinasi pada temperatur 500 °C. Karakterisasi dilakukan antara lain menggunakan X-ray Diffraction (XRD, Scanning Electron Microscopy-Energy Dispersive X-ray Spectroscopy (SEM-EDX dan karakterisasi pori dengan metode physisorption menggunakan nitrogen pada temperatur 44 K. Molecular sieve TiZA yang dihasilkan stabil terhadap temperatur tinggi, dan larutan asam. Modifikasi zeolit A dengan titanium telah mampu meningkatkan stabilitas molecular sieve Ti-zeolit A dalam larutan asam nitrat selama 24 jam. Distribusi ukuran pori BJH (Barret Joyner Halenda  yang sempit menggambarkan ukuran yang homogen dengan didominasi oleh mikro porus dengan diameter rata-rata sekitar 4Å. Uji coba pemurnian asam nitrat dengan menggunakan molecular sieve secara single stage dapat meningkatkan kemurnian asam nitrat dari 70% hingga 85%.

  11. Chlamydia trachomatis ompA genotypes in male patients with urethritis in Greece: conservation of the serovar distribution and evidence for mixed infections with Chlamydophila abortus.

    Science.gov (United States)

    Psarrakos, Panagiotis; Papadogeorgakis, Eleni; Sachse, Konrad; Vretou, Evangelia

    2011-08-01

    PCR amplification and nucleotide sequencing of the ompA gene of Chlamydia trachomatis were used to determine the prevalence and distribution of genotypes in 51 urine and urethral specimens from Greek male patients with urethritis, that were positive by the COBAS Amplicor test. A single C. trachomatis serovar was identified in 43 of the 51 amplified samples. Serovars F and E were the most prevalent (both 12, 28%), followed by D (9, 21%), G (4, 9%), B and K (both 2, 5%) and H and J (both 1, 2%). Over one third of the samples bared a variant ompA genotype that had been previously identified in other areas worldwide. Two results in this study, both observed for the first time, were of particular interest. First, the emergence of the unique variant genotype D/Ep6 (X77364.2) identified in 3 urethral samples. Second, the ompA genotype OCLH196 of the animal pathogen Chlamydophila abortus as well as a 23S rRNA gene fragment of this species detected by the assay ArrayTube™ was found in 7 urethral samples. The implications resulting from this observation for the health of the general population are discussed. Copyright © 2011 Elsevier Ltd. All rights reserved.

  12. Identification and monitoring of host cell proteins by mass spectrometry combined with high performance immunochemistry testing.

    Directory of Open Access Journals (Sweden)

    Katrin Bomans

    Full Text Available Biotherapeutics are often produced in non-human host cells like Escherichia coli, yeast, and various mammalian cell lines. A major focus of any therapeutic protein purification process is to reduce host cell proteins to an acceptable low level. In this study, various E. coli host cell proteins were identified at different purifications steps by HPLC fractionation, SDS-PAGE analysis, and tryptic peptide mapping combined with online liquid chromatography mass spectrometry (LC-MS. However, no host cell proteins could be verified by direct LC-MS analysis of final drug substance material. In contrast, the application of affinity enrichment chromatography prior to comprehensive LC-MS was adequate to identify several low abundant host cell proteins at the final drug substance level. Bacterial alkaline phosphatase (BAP was identified as being the most abundant host cell protein at several purification steps. Thus, we firstly established two different assays for enzymatic and immunological BAP monitoring using the cobas® technology. By using this strategy we were able to demonstrate an almost complete removal of BAP enzymatic activity by the established therapeutic protein purification process. In summary, the impact of fermentation, purification, and formulation conditions on host cell protein removal and biological activity can be conducted by monitoring process-specific host cell proteins in a GMP-compatible and high-throughput (> 1000 samples/day manner.

  13. PREDIKSI BISNIS FOREX MENGGUNAKAN MODEL NEURAL NETWORK BERBASIS ADA BOOST MENGGUNAKAN 2047 DATA

    Directory of Open Access Journals (Sweden)

    Suyatno Suyatno

    2016-11-01

    Full Text Available Setelah melakukan penelitian dan percobaan maka didapatkan hasil penelitian pertama yang telah dilakukan dengan menggunakan Algoritma Neural Network Backpropagatioan dengan menggunakan data sebanyak 268 menunjungkan tingkat akurasi error prediksi pada waktu prediksi per 5 menit sebesar 0.758619403, bila menggunakan data sebanyak 2047 menunjukkan tingkat akurasi error prediksi sebesar 0.500161212 dan hasil penelitian kedua yang telah dilakukan menggunakan Algoritma Optimasi Adaboost pada proses trainning dan ditambah Neural Network Backpropagation pada proses learning menunjukkan tingkat akurasi error prediksi pada waktu prediksi per 5 menit menggunakan data sebanyak 268 sebesar 0.397014925, bila menggunakan data sebanyak 2047 menunjukkan tingkat akurasi error prediksi sebesar 0.099951148. Tahap awal dalam melakukan penelitian ini sampai dengan pengujian menggunakan perhitungan prediksi nilai akurasi error menggunakan rumus MSE (Mean Sequare Error dengan menggunakan algoritma optimasi adaboost untuk memberikan jawaban atas permasalahan bahwa nilai akurasi error Algoritma Neural Network Backpropagation perlu direndahkan agar akurasi prediksi meningkat dan tahap kedua dilakukan uji coba menggunakan data yang lebih banyak dibandingan dengan tahap ke satu. Berdasarkan hasil penelitian yang telah dilakukan, dapat disimpulkan bahwa Algoritma Neural Network memiliki akurasi yang lebih rendah bila dibandingkan dengan akurasi menggunakan metode optimasi adaboost pada proses trainning ditambah dengan Neural Network, ini dapat dilihat dengan rendahnya tingkat error MSE menggunakan metode adaboost + neural network dan dapat disimpukan pula bahwa dengan menggunakan jumlah data yang lebih banyak maka dapat menurunkan tingkat akurasi error MSE sehingga berhasil meningkatkan akurasi prediksi dalam bisnis forex trading. Kata kunci: forex, trading, neural network, adaboost, central capital futures.

  14. Determinants of vitamin D status in fair-skinned women of childbearing age at northern latitudes.

    Directory of Open Access Journals (Sweden)

    Linnea Hedlund

    Full Text Available BACKGROUND AND OBJECTIVE: Poor vitamin D status during pregnancy has been associated with unfavorable outcomes for mother and child. Thus, adequate vitamin D status in women of childbearing age may be important. The aim of this study is to investigate the determinants of 25-hydroxyvitamin D (25(OHD serum concentrations in women of childbearing age living in Sweden, at latitude 57-58° north. METHOD: Eighty four non-pregnant, non-lactating, healthy, fair-skinned women aged between 25-40 years were included. All subjects provided blood samples, four day food records and answered questionnaires about sun exposure and lifestyle. Total serum 25(OHD was analyzed using Roche Cobas® electrochemoluminiescent immunoassay. RESULTS: Mean 25(OHD was 65.8±19.9 nmol/l and 23% of the subjects had concentrations <50 nmol/l. Only 1% had concentrations <25 nmol/l. Determinants of 25(OHD concentrations were recent sunbed use, recent travel to southern latitude, season, estrogen contraceptive use and use of supplementary vitamin D (R(2 = 0.27. CONCLUSION: Every fifth woman had 25(OHD concentrations <50 nmol/l. About 30% of the variation in vitamin D status was explained by sun exposure, use of vitamin D supplements and use of estrogen contraceptives. Cutaneous vitamin D synthesis seems to be a major contributor to vitamin D status, even at northern latitudes. Thus, recommendations on safe UV-B exposure could be beneficial for vitamin D status.

  15. Evaluation of the Hologic gen-probe PANTHER, APTIMA Combo 2 assay in a tertiary care teaching hospital.

    Science.gov (United States)

    Cheng, Annie; Kirby, James E

    2014-03-01

    To evaluate the performance of the Hologic Gen-Probe (San Diego, CA) PANTHER system. The performance of PANTHER was compared with the Hologic Gen-Probe TIGRIS and/or Roche (Indianapolis, IN) COBAS AMPLICOR systems through testing of patient specimens and the spiked-urine matrix. After discrepant resolution, PANTHER demonstrated a 99.3% (95% confidence interval [CI], 96.0%-99.9%) positive and 100% (98.5%-100.0%) negative agreement for Chlamydia trachomatis (CT) and 100% (96.6%-100.0%) positive and 100% (98.6%-100.0%) negative agreement for Neisseria gonorrhoeae (NG) for all male, female, unsexed, and NG-spiked female urine specimens combined. For other specimen types collectively, the PANTHER demonstrated 100% (95% CI, 90.6%-100.0%) positive and 100% (88.3%-100.0%) negative agreement for CT and 90.9% (62.8%-98.4%) positive and 100% (93.5%-100.0%) negative agreement for NG. Analytical sensitivity of the PANTHER in urine matrix was similar to the TIGRIS system. The PANTHER system provides an excellent new addition to options for detecting CT and NG, is appropriate for testing urine samples, and will facilitate high-throughput testing in the clinical laboratory.

  16. Analisa Arc Flash Pada Sistem Kelistrikan Di PT. Wilmar Nabati Indonesia, Gresik – Jawa Timur

    Directory of Open Access Journals (Sweden)

    Aditya Aji Nugroho

    2017-03-01

    Full Text Available Studi untuk mengetahui besar busur api yang dihasilkan pada masing-masing switchgear perlu dilakukan untuk mengklasifikasikan kategori energi busur api yang terjadi serta kaitannya dengan PPE (Personal Protective Equipment yang harus dikenakan pekerja sebagai langkah pencegahan agar terhindar dari jatuhnya korban jiwa. Oleh karena itu perlu dilakukan perhitungan insiden energi arc flash sesuai standar IEEE 1584-2002 serta pengklasifikasian kategori dan alat perlindungan diri yang tepat agar memberikan rasa aman dan nyaman bagi para pekerja sehingga dapat bekerja secara optimal. Studi ini akan coba diterapkan pada sistem kelistrikan di PT. Wilmar Nabati Indonesia, Gresik – Jawa Timur mengingat pentingnya perusahaan tersebut mengamankan peralatan serta pekerjanya dari insiden energy arc flash. Hasil yang didapat pada tugas akhir ini adalah pada tipikal 1 nilai insiden energinya mengalami peningkatan yaitu dari 1.988 cal/cm2 menjadi 8.66 cal/cm2, pada tipikal 2 nilai insiden energi tertinggi 19.596 cal/cm2 turun menjadi 6.00 cal/cm2, pada tipikal 3 nilai insiden energi nya mengalami peningkatan yaitu dari 19.596 cal/cm2 menjadi 36.52 cal/cm2 kenaikan ini disebabkan karena terjadi kesalahan koordinasi rele.

  17. Pembuatan Kakas Pendeteksi Unused Method pada Kode Program PHP dengan Framework CodeIgniter Menggunakan Call Graph

    Directory of Open Access Journals (Sweden)

    Divi Galih Prasetyo Putri

    2014-03-01

    Full Text Available Proses evolusi dan perawatan dari sebuah sistem merupakan proses yang sangat penting dalam rekayasa perangkat lunak tidak terkecuali pada aplikasi web. Pada proses ini kebanyakan pengembang tidak lagi berpatokan pada rancangan sistem. Hal ini menyebabkan munculnya unused method. Bagian-bagian program ini tidak lagi terpakai namun masih berada dalam sistem. Keadaan ini meningkatkan kompleksitas dan mengurangi tingkat understandability sistem. Guna mendeteksi adanya unused method pada progam diperlukan teknik untuk melakukan code analysis. Teknik static analysis yang digunakan memanfaatkan call graph yang dibangun dari kode program untuk mengetahui adanya unused method. Call graph dibangun berdasarkan pemanggilan antar method. Aplikasi ini mendeteksi unused method pada kode program PHP yang dibangun menggunakan framework CodeIgniter. Kode program sebagai inputan diurai kedalam bentuk Abstract Syntax Tree (AST yang kemudian dimanfaatkan untuk melakukan analisis terhadap kode program. Proses analisis tersebut kemudian menghasilkan sebuah call graph. Dari call graph yang dihasilkan dapat dideteksi method-method mana saja yang tidak berhasil ditelusuri dan tergolong kedalam unused method. Kakas telah diuji coba pada 5 aplikasi PHP dengan hasil  rata-rata nilai presisi sistem sebesar 0.749 dan recall sebesar 1.

  18. Effects of different centrifugation conditions on clinical chemistry and Immunology test results

    Directory of Open Access Journals (Sweden)

    Nesic Predrag

    2011-05-01

    Full Text Available Abstract Background The effect of centrifugation time of heparinized blood samples on clinical chemistry and immunology results has rarely been studied. WHO guideline proposed a 15 min centrifugation time without citing any scientific publications. The centrifugation time has a considerable impact on the turn-around-time. Methods We investigated 74 parameters in samples from 44 patients on a Roche Cobas 6000 system, to see whether there was a statistical significant difference in the test results among specimens centrifuged at 2180 g for 15 min, at 2180 g for 10 min or at 1870 g for 7 min, respectively. Two tubes with different plasma separators (both Greiner Bio-One were used for each centrifugation condition. Statistical comparisons were made by Deming fit. Results Tubes with different separators showed identical results in all parameters. Likewise, excellent correlations were found among tubes to which different centrifugation conditions were applied. Fifty percent of the slopes lay between 0.99 and 1.01. Only 3.6 percent of the statistical tests results fell outside the significance level of p Conclusion A centrifugation time of either 7 or 10 min provided identical test results compared to the time of 15 min as proposed by WHO under the conditions used in our study.

  19. PENGEMBANGAN SOAL MATEMATIKA TIPE TIMSS MENGGUNAKAN KONTEKS RUMAH ADAT UNTUK SISWA SEKOLAH MENENGAH PERTAMA

    Directory of Open Access Journals (Sweden)

    Eva Susanti

    2016-06-01

    Full Text Available Penelitian ini bertujuan untuk: (1 menghasilkan soal-soal tipe TIMSS yang valid dan praktis menggunakan konteks Rumah Adat di SMP; (2melihat efek potensial soal-soal tipe TIMSS terhadap kemampuan penalaran matematika siswa di SMP. Penelitian ini merupakan penelitian pengembangan (development research. Subjek penelitian adalah siswa kelas VIII-7 SMP Negeri 9 Palembang sebanyak 32 orang. Pengumpulan data menggunakan analisis dokumen, dan tes soal tipe TIMSS. Semua data yang dikumpulkan dianalisis secara deskriptif kualitatif. Hasil analisis data menyimpulkan bahwa (1 penelitian ini telah menghasilkan suatu produk soal tipe TIMSS menggunakan konteks Rumah Adat untuk siswa kelas VIII SMP yang valid dan praktis. Valid tergambar dari hasil penilaian validator, dimana semua validator menyatakan sudah baik berdasarkan content, konstruk, dan bahasa.  Selain itu kevalidan soal tipe TIMSS ini tergambar setelah dilakukan analisis validasi butir soal pada siswa sebanyak 26 orang non subjek penelitian. Praktis tergambar dari hasil uji coba small group dimana sebagian besar siswa dapat menyelesaikan soal tipe TIMSS yang diberikan. (2 prototype soal tipe TIMSS  yang dikembangkan memilki efek potensial yang positif terhadap kemampuan penalaran matematika siswa. Hasil yang diperoleh rata-rata kemampuan penalaran matematika siswa dalam menjawab soal matematika tipe TIMSS sebesar 56 yang termasuk kategori baik. Kata Kunci: Penelitian Pengembangan, Soal tipe TIMSS, Konteks Rumah Adat DOI: http://dx.doi.org/10.22342/jpm.10.2.3631.53-74

  20. Multicenter evaluation of an enzymatic method for glycated albumin.

    Science.gov (United States)

    Paleari, Renata; Bonetti, Graziella; Callà, Cinzia; Carta, Mariarosa; Ceriotti, Ferruccio; Di Gaetano, Nicola; Ferri, Marilisa; Guerra, Elena; Lavalle, Gabriella; Cascio, Claudia Lo; Martino, Francesca Gabriela; Montagnana, Martina; Moretti, Marco; Santini, Gabriele; Scribano, Donata; Testa, Roberto; Vero, Anna; Mosca, Andrea

    2017-06-01

    The use of glycated albumin (GA) has been proposed as an additional glycemic control marker particularly useful in intermediate-term monitoring and in situation when HbA 1c test is not reliable. We have performed the first multicenter evaluation of the analytical performance of the enzymatic method quantILab Glycated Albumin assay implemented on the most widely used clinical chemistry analyzers (i.e. Abbott Architect C8000, Beckman Coulter AU 480 and 680, Roche Cobas C6000, Siemens ADVIA 2400 and 2400 XPT). The repeatability of the GA measurement (expressed as CV, %) implemented in the participating centers ranged between 0.9% and 1.2%. The within-laboratory CVs ranged between 1.2% and 1.6%. A good alignment between laboratories was found, with correlation coefficients from 0.996 to 0.998. Linearity was confirmed in the range from 7.6 to 84.7%. The new enzymatic method for glycated albumin evaluated by our investigation is suitable for clinical use. Copyright © 2017 Elsevier B.V. All rights reserved.

  1. Self-collected cervicovaginal sampling for site-of-care primary HPV-based cervical cancer screening: a pilot study in a rural underserved Greek population.

    Science.gov (United States)

    Chatzistamatiou, Kimon; Chatzaki, Εkaterini; Constantinidis, Τheocharis; Nena, Evangelia; Tsertanidou, Athena; Agorastos, Theodoros

    2017-11-01

    In the present pilot study, the feasibility of a site-of-care cervicovaginal self-sampling methodology for HPV-based screening was tested in 346 women residing in underserved rural areas of Northern Greece. These women provided self-collected cervicovaginal sample along with a study questionnaire. Following molecular testing, using the cobas ® HPV Test, Roche ® , HPV positive women, were referred to colposcopy and upon abnormal findings, to biopsy and treatment. Participation rate was 100%. Regular pap-test examination was reported for 17.1%. Among hrHPV testing, 11.9% were positive and colposcopy/biopsy revealed 2 CIN3 cases. Non-compliance was the most prevalent reason for no previous attendance. Most women reported non-difficulty and non-discomfort in self-sampling (77.6% and 82.4%, respectively). They would choose self-sampling over clinician-sampling (86.2%), and should self-sampling being available, they would test themselves more regularly (92.3%). In conclusion, self-sampling is feasible and well-accepted for HPV-based screening, and could increase population coverage in underserved areas, helping towards successful prevention.

  2. Comparison of Six Automated Treponema-Specific Antibody Assays.

    Science.gov (United States)

    Park, Borae G; Yoon, Jihoon G; Rim, John Hoon; Lee, Anna; Kim, Hyon-Suk

    2016-01-01

    Six different Treponema (TP)-specific immunoassays were compared to the fluorescent treponemal antibody absorption (FTA-ABS) test. A total of 615 samples were tested. The overall percent agreement, analytical sensitivity, and analytical specificity of each assay compared to the FTA-ABS test were as follows: Architect Syphilis TP, 99.2%, 96.8%, and 100%; Cobas Syphilis, 99.8%, 99.4%, and 100%; ADVIA Centaur Syphilis, 99.8%, 99.4%, and 100%; HISCL Anti-TP assay kit, 99.7%, 98.7%, and 100%; Immunoticles Auto3 TP, 99.0%, 97.5%, and 99.6%; Mediace TPLA, 98.0%, 98.1%, and 98.0%. All results that were discrepant between the TP-specific assays were associated with samples from noninfectious cases (11 immunoassay false positives and 7 from previous syphilis cases). Our study demonstrated that TP-specific immunoassays generally showed high sensitivities, specificities, and percentages of agreement compared to FTA-ABS, with rare cases of false-positive or false-negative results. Therefore, most TP-specific immunoassays are acceptable for use in screening for syphilis. However, it is important to perform a thorough review of a patient's clinical and treatment history for interpreting the results of syphilis serology. Copyright © 2015, American Society for Microbiology. All Rights Reserved.

  3. Aplikasi Micro Morr E-3360 sebagai Bahan Bioremedian Tumpahan Minyak di Laut

    Directory of Open Access Journals (Sweden)

    Endar Marraskuranto

    2012-12-01

    Full Text Available Penelitian ini bertujuan untuk menguji kelayakan Micro Morr E-3360 sebagai bahan bioremedian tumpahan minyak di laut pada skala laboratorium. Kelayakan didasari pada efektivitas pengurangan kadar Total Petroleum Hydrocarbon (TPH, toksisitas air laut hasil bioremediasi dan residu media imobilisasi dari produk. Analisis kadar TPH dilakukan dengan menggunakan spektrofotometer UV-Vis dan tingkat toksisitas diukur menggunakan metode Brine Shrimp Lethality Test (BSLT. Identifikasi konsorsium bakteri dilakukan pada media imobilisasi dengan analisis sekuens gen 16S rDNA. Penelitian dilakukan dengan lima uji coba dalam beaker, yaitu air laut dan minyak 2% w/w dari air laut (M; air laut, minyak 2% w/w dari air laut, bioremedian 10% w/w dari minyak, dan nutrien (P; kontrol air laut (AL; kontrol air laut dan bioremedian 10% w/w dari minyak (B; serta air laut dan nutrien (K. Hasil analisis menunjukkan bahwa konsorsium bakteri terdiri dari 3 spesies bakteri, yaitu Bacillus licheniformis, B. thermoamylovorans, dan Geobacillus pallidus. Bioremedian ini mampu menurunkan kadar TPH dalam air sebesar 77% dan tingkat toksisitas sebesar 88% selama 20 hari. Kadar residu minyak dalam media imobilisasi juga rendah, yaitu di bawah 2 ppm. Namun, penurunan kadar oksigen dan peningkatan turbiditas yang signifikan (P<0,05 dapat menjadi faktor utama kematian 50% populasi A. salina.

  4. Cervical HPV prevalence and genotype distribution in immunosuppressed Danish women

    DEFF Research Database (Denmark)

    Roensbo, Mette T; Blaakær, Jan; Skov, Karin

    2018-01-01

    INTRODUCTION: Women receiving immunosuppressive treatment due to organ transplantation are at increased risk of Human papilloma virus (HPV)-related diseases, including cervical neoplasia. This pilot study aimed to describe the cervical HPV prevalence and genotype distribution in immunosuppressed...... in 2014 had three cervical cytologies performed; one before and two after transplantation. The samples were examined for cytological abnormalities and tested for HPV using Cobas(®) HPV Test and CLART(®) HPV2 Test. RESULTS: Of 94 eligible cases we included 60 RTR and BMTR. The overall prevalence of high......-risk HPV was 15.0 (95% CI; 7.1-26.6) and the prevalence was higher among BMTR (29.4, CI; 10.3-56.0) than in RTR (9.3%, CI; 2.6-22.1) although this was not statistically significant (p=0.10). The distribution of high-risk HPV was broad with HPV 45 as the most common genotype (3.3%). The prevalences of high...

  5. Diagnostic accuracy of des-gamma-carboxy prothrombin for hepatocellular carcinoma in a French cohort using the Lumipulse® G600 analyzer.

    Science.gov (United States)

    Sultanik, P; Ginguay, A; Vandame, J; Popovici, T; Meritet, J-F; Cynober, L; Pol, S; Bories, P-N

    2017-01-01

    The increasing incidence of hepatocellular carcinoma (HCC) in Western countries requests reliable tumour markers for preclinical diagnosis. We evaluated the diagnostic accuracy of des-gamma-carboxy prothrombin (DCP), in comparison with alpha-fetoprotein (AFP) in a French cohort using a new analyser. One hundred and sixty-two patients with virus-related cirrhosis (46 HCC patients and 116 controls) were recruited in this retrospective proof-of-concept study. DCP was measured on new Lumipulse ® G600 analyzer and AFP on usual Cobas e602 analyzer in serum samples that were collected at the time of HCC diagnosis for HCC patients or during follow-up for controls. DCP and AFP levels were higher in HCC patients. The area under receiver operating characteristic curve was larger for DCP than for AFP (0.89 vs 0.77, P=.03). At the cut-off value of 128 mAU/mL, sensitivity and specificity for DCP were 74% and 92%. At the cut-off value of 20 μg/L, sensitivity and specificity for AFP were 63% and 82%. NRI >0 for the association of "AFP+DCP" were 101%, P<.0001, and 23%, P=.03, compared to "AFP" or "DCP" alone, respectively. We conclude that DCP outperformed AFP for the detection of HCC. © 2016 John Wiley & Sons Ltd.

  6. [Clinical benefit of HCV core antigen assay in patients receiving interferon and ribavirin combination therapy].

    Science.gov (United States)

    Higashimoto, Makiko; Takahashi, Masahiko; Jokyu, Ritsuko; Saito, Hidetsugu

    2006-02-01

    A highly sensitive second generation HCV core antigen assay has recently been developed. We compared viral disappearance and kinetics data between commercially available core antigen assays, Lumipulse Ortho HCV Ag, and a quantitative HCV RNA PCR assay, Cobas Amplicor HCV Monitor Test, Version 2 to estimate the predictive benefit of sustained viral response (SVR) and non-SVR in 59 patients treated with interferon and ribavirin combination therapy. We found a good correlation between HCV core Ag and HCV RNA level regardless of genotype. Although the sensitivity of the core antigen assay was lower than PCR, the dynamic range was broader than that of the PCR assay, so that we did not need to dilute the samples in 59 patients. We detected serial decline of core Ag levels in 24 hrs, 7 days and 14 days after interferon combination therapy. The decline of core antigen levels was significant in SVR patients compared to non-SVR as well as in genotype 2a, 2b patients compared to 1b. Core antigen-negative on day 1 could predict all 10 SVR patients (PPV = 100%), whereas RNA-negative could predict 22 SVR out of 25 on day 14 (PPV = 88.0%). None of the patients who had detectable serum core antigen on day 14 became SVR(NPV = 100%), although NPV was 91.2% on RNA negativity. An easy, simple, low cost new HCV core antigen detecting system seems to be useful for assessing and monitoring IFN treatment for HCV.

  7. Rancang Bangun Aplikasi Angkutan Trans Sarbagita Provinsi Bali Berbasis Perangkat Bergerak

    Directory of Open Access Journals (Sweden)

    I Made Aditya Pradnyadipa Mustika

    2017-03-01

    Full Text Available Trans Sarbagita merupakan salah satu upaya pemerintah Bali dalam menyediakan fasilitas angkutan umum untuk mengurangi kemacetan. Trans Sarbagita adalah sebuah fasilitas BRT (Bus Rapid Transit yang memiliki angkutan pengumpan tersendiri untuk mengangkut penumpang ke halte-halte bus terdekat. Trans Sarbagita sendiri sudah memiliki rencana rute untuk armada bus dan pengumpan mereka. Dari sebagian rute yang sudah beroperasi, informasi seputar rute, dan halte yang sudah beroperasi dirasa belum terpublikasi dengan baik sehingga dapat menjadi masalah bukan hanya untuk masyarakat Bali, tapi juga untuk para wisatawan yang ingin menggunakan fasilitas tersebut. Salah satu cara mengatasi permasalahan tersebut adalah dengan membangun sebuah aplikasi yang berisikan informasi mengenai halte dan rute-rute yang dapat ditempuh untuk mencapai tujuan yang dapat diakses melalui perangkat bergerak. Aplikasi Trans Sarbagita dapat memberikan rute terpendek yang dapat dilalui trayek pengumpan berdasarkan lokasi awal dan tujuan pengguna yang dikalkulasikan dengan algoritma Dijkstra. Selain menampilkan rute terpendek, aplikasi ini juga dapat menampilkan rute trayek serta lokasi halte Trans Sarbagita yang sudah beroperasi. Hasil uji coba sistem sudah menunjukkan berjalannya sistem dengan baik sesuai dengan perancangan awal. Meskipun demikian pengembangan lebih lanjut masih dibutuhkan untuk mengimbangi berkembangnya teknologi, serta berubahnya kebutuhan pengguna yang dapat diaplikasikan pada aplikasi ini.

  8. EVALUASI APLIKASI EXPLOID WIFI DI TINGKAT AVAILABILITY DAN VULNERABILITY

    Directory of Open Access Journals (Sweden)

    Timur Dali Purwanto

    2017-11-01

    Full Text Available Pada sistem jaringan wireless sering terjadi masalah yaitu salah satunya keamanan wifi yang menggunakan keamanan WPA, WPA2, dan WEP yang ditinjau dari vulneravility. Karena teknologi  wireless memanfaatkan frekwensi tinggi untuk menghantarkan sebuah komunikasi, maka kerentanan terhadap keamanan juga lebih tinggi dibanding dengan teknologi komunikasi yang lainnya. Sekarang ini sudah banyak tool aplikasi exploit wifi yang di gunakan oleh hacker atau attacker salah satunya tool Reaver dan tool Aircrack dalam system operasi kali linux, dari kedua tool tersebut peneliti ingin mencari perbandingan dari tingkat availability. Karena kedua tool tersebut menrut peneliti adalah tool yang terbaik saat ini. Dalam penelitian ini parameter yang akan di ukur adalah seberapa capat waktu ackes ke jaringan wifi, seberapa cepat menembus keamanan wifi, dan berapa besaran biter yang di dapat. Dari hasil penelitian dan uji coba maka di simpulkan bahwa untuk segi kecepatan aircrack yang lebih cepat untuk memecah password karena bruteforce dengan wordlist, reaver langsung scanning password wifi namun memakan waktu sangat lama hampir 13 jam untuk waktu terlama   Kata kunci:  Tool Reaver dan Aircrack, Avability dan vurnability bruteforce, wordlist

  9. Stratified Mucin-Producing Intraepithelial Lesion of the Cervix: Subtle Features Not to Be Missed.

    Science.gov (United States)

    Schwock, Joerg; Ko, Hyang Mi; Dubé, Valérie; Rouzbahman, Marjan; Cesari, Matthew; Ghorab, Zeina; Geddie, William R

    2016-01-01

    Stratified mucin-producing intraepithelial lesion (SMILE) is an uncommon premalignant lesion of the uterine cervix. A detailed examination of preinvasive SMILE cases including a comparison of the cytologic features with usual-type adenocarcinoma in situ (AIS) and human papillomavirus (HPV) genotyping was performed. Excisions and preceding Papanicolaou (Pap) tests were retrieved from the files of 2 tertiary care centers. Histologic review estimated the lesional SMILE proportion. Pap tests were reviewed and assessed for architectural, cellular and background features. Cobas® HPV test was performed. 13 cases were identified. Mean/median patient age was 35/33 years (range 23-51 years). Concurrent high-grade squamous intraepithelial lesion was found in 10/13 (77%) and AIS in 8/13 (62%) cases. In 6 cases, SMILE was dominant (≥50%) and represented in 5/6 corresponding Pap tests. Cytology interpretations differed more often in the SMILE-dominant group (p < 0.05). SMILE and AIS had overlapping features. Feathering and prominent nucleoli were absent in SMILE. HPV DNA was detected in all 12 cases tested. HPV 18 was most common (7/12). Excisions with positive/suspicious margins were reported in 5/6 SMILE-dominant versus 3/7 nondominant cases. SMILE is best considered as an AIS variant for cytologic, etiologic and management purposes. Cytologic features overlap with AIS, but are more subtle and easily missed. HPV testing may play a role in facilitating SMILE detection. © 2016 S. Karger AG, Basel.

  10. Iklim Belajar dan Iklim Praktik serta Produktivitas Belajar ditinjau dari Aspek Kepemimpinan Kepala Sekolah dalam Konteks Pendidikan Sistem Ganda

    Directory of Open Access Journals (Sweden)

    Hakim Hakim

    2004-01-01

    Full Text Available Penelitian ini bertujuan untuk mengetahui peibedaan: (1 kepemimpinan kepala sekolah, (2 iklim belajar, (3 iklim praktik, dan (4 produktivitas belajar siswa. Jenis penelitian ini adalah causal-comparative research. Penelitian ini dilaksanakan di SMK Negeri 2 Yogyakarta dan SMK Negeri 2 Depok Sleman Yogyakarta pada Junisan Bangunan Gedung. Sumber datanya meliputi kepala sekolah, staf, guru, dan siswa. Data penelitian dikumpulkan dengan menggunakan angket, observasi, dan dokumentasi. Kesahihan instrumen penelitian diuji dengan menggunakan analisis faktor, dan keandalan instrumen diuji dengan menggunakan koefisien alpha dari Cronbach. Dari hasil uji coba instrumen telah memenuhi persyaratan vatiditas dan reliabilitas. Data dianalisis dengan menggunakan analisis deskriptif dan analisis komparatif. Dari hasil analisis diperoleh kesimpulan sebagai berikut: (1 kepemimpinan kepala sekolah SMK Negeri 2 Yogyakarta lebih cendenmg bersifat kepemimpinan administrator, sedangkan kepemimpinan kepala sekolah SMK Negeri 2 Depok Sleman Yogyakarta lebih cendenmg bersifat kepemimpinan manajer; (2 terdapat peibedaan iklim belajar antara SMK Negeri 2 Yogyakarta dengan SMK Negeri 2 Depok Sleman Yogyakarta; (3 terdapat peibedaan iklim praktek antara SMK Negeri 2 Yogayakarta dengan SMK Negeri 2 Depok Sleman Yogyakarta; (4 terdapat peibedaan produktivitas belajar siswa antara SMK Negeri 2 Yogyakarta dengan SMK Negeri 2 Depok Sleman Yogyakarta; (5 hasil penelitian ini menunjukkan bahwa gaya kepemimpinan administrator lebih baik dari pada gaya kepemimpinan manager. Kata kunci: iklim, produktifitas, aspek, kepemimpinan konteks.

  11. Diagnosis and Follow Up of Prostate Carcinoma by an in House Prostate Specific Antigen ELISA Kit at Pramongkutklao Hospital

    International Nuclear Information System (INIS)

    Dumrongpisutikut, S.; Raungdilokrut, S.

    1998-01-01

    PSA ELISA kit was developed and compared to a commercial PSA ELISA kit (Cobas Registered trade mark Core PSA EIA, Roche Switzerland) with a correlation of 98.9% (r 0.989, p < 0.05). The precision of the assay kit evaluated by intermal quality control studies shown that the coefficient of variation of high, medium and low control were 4.4, 3.6 and 4.7% respectively. The sentuvity of detection was 0.25 ng/ml. This PSA ELISA kit has been used for detection of PSA in serum of 571 patients ages between 25-93 years old with satisfactory results. The normal range of PSA is 0 - 3.46 ng/ml (X-bar = 2SD, n = 384). The mean value of PSA in Prostate carcinoma before treatment and after successful treatment are 77.30 ng/ml (n = 53) and 1.64 ng/ml (n = 25) and increase to 53.71 ng/ml (n = 8) in metastasis. In Benign Prostate Hyperplasia (BPH) the range of PSA is 0 - 27.52 ng/ml (n = 74). Phi (φ) coefficient analysis shown that the correlation of PSA and Prostate carcinoma is 63.8% with a sensitivity and specificity of 100% and 86.9% respectively

  12. The role of carboxyhemoglobin measured with CO-oximetry in the detection of hemolysis in newborns with ABO alloimmunization.

    Science.gov (United States)

    Lozar-Krivec, Jana; Bratanic, Borut; Paro-Panjan, Darja

    2016-01-01

    To evaluate carboxyhemoglobin (COHb) values measured with a CO-oximeter (Roche-cobas b 221) in jaundiced newborns with or without hemolysis and healthy controls in order to assess whether COHb measurement determined with a CO-oximeter could be used as an indicator of hemolysis in newborns with ABO alloimmunization. A total of 86 term newborn infants were prospectively studied. The study cohort consisted of three subgroups: 18 infants with ABO HDN, 21 infants with hyperbilirubinemia without hemolytic disease who required phototherapy, and 47 healthy controls. The COHb, bilirubin, and Hb levels were measured. The three subgroups did not differ significantly with respect to birth weight, gestational age, gender, Apgar score, or mode of delivery. The ABO HDN infants had significantly higher COHb values than the healthy controls (median 2.4% versus 1.3%, p < 0.0005) and the group with hyperbilirubinemia without hemolytic disease (median 2.4% versus 1.3%, p < 0.0005), although the infants with hyperbilirubinemia without hemolytic disease did not have significantly higher COHb values compared with the healthy controls. The cut-off value of 1.7% COHb had 72% sensitivity and 97% specificity for confirming hemolysis in ABO alloimmunization. Our data show that COHb values determined with CO-oximeters are higher in newborns with hemolysis than in those without hemolysis. COHb measured with CO-oximeters could be used to confirm hemolysis in infants with ABO alloimmunization.

  13. Uji Performansi Algoritma Floyd-Warshall Pada Jaringan Software Defined Network (SDN

    Directory of Open Access Journals (Sweden)

    Ihsan Aris Saputra

    2016-12-01

    Full Text Available Penentuan rute pada sebuah jaringan software defined network (SDN merupakan salah satu contoh topik yang menarik untuk diteliti. Algoritma penentuan rute terpendek pada jaringan SDN sangatlah menentukan apakah jaringan SDN yang dibangun dengan algoritma tersebut sudah optimal. Salah satu algoritma penentuan rute terpendek yaitu algoritma FloydWarshall, yang akan diuji coba dan dianalisis apakah sudah termasuk algoritma yang optimal pada jaringan SDN dengan membandingkan dengan standarisasi yang ada. Pengujian akan dilakukan dengan mengirimkan paket data, VoIP dan video dengan melihat overhead traffic dan QoS (delay dan packet loss. Algoritma Floyd-Warshall akan digunakan pada pengontrol Ryu dan menggunakan Mininet sebagai emulator jaringan dengan topologi berbasis Abiline. Hasil simulasi dan pengujian algoritma Floyd-Warshall sebagai penentuan jalur terbaik dalam jaringan SDN, mendapatkan hasil yang memenuhi standarisasi. Nilai dari QoS yang didapat untuk delay masih berada pada nilai yang menjadi standar ITU-T G.1010. Packet loss yang dihasilkan semua jenis layanan sudah memenuhi standar ITU-T G.1010 yaitu 0% hingga saat pada jaringan diberikan background traffic melebihi kapasitas link yaitu pemberian sebesar 75 Mbps. Dalam pengujian waktu konvergensi didapatkan waktu dengan rata-rata nilai 17.71446 detik. Kemudian untuk overhead traffic menunjukan bahwa perubahan overhead dipengaruhi oleh controller update dan juga flow update, dimana ketika sering terjadinya controller update dan flow update maka semakin besar juga overhead yang didapat.

  14. HCV viraemia in anti-HCV-negative haemodialysis patients: Do we need HCV RNA detection test?

    Science.gov (United States)

    Papadopoulos, Nikolaos; Griveas, Ioannis; Sveroni, Eirini; Argiana, Vasiliki; Kalliaropoulos, Antonios; Martinez-Gonzalez, Beatriz; Deutsch, Melanie

    2018-03-01

    Hepatitis C virus (HCV) infection is still common among dialysis patients, but the natural history of HCV in this group is not completely understood. The KDIGO HCV guidelines of 2009 recommend that chronic haemodialysis patients be screened for HCV antibody upon admission to the dialysis clinic and every 6 months thereafter if susceptible to HCV infection. However, previous studies have shown the presence of HCV viraemia in anti-HCV-negative haemodialysis patients as up to 22%. To evaluate the presence of HCV viraemia, using HCV RNA detection, among anti-HCV-negative haemodialysis patients from a tertiary dialysis unit in Athens. We enrolled 41 anti-HCV-negative haemodialysis patients diagnosed with third-generation enzyme immunoassay. HCV viraemia was evaluated using a sensitive (cut-off: 12 IU/mL) reverse transcriptase polymerase chain reaction (COBAS AmpliPrep/TaqMan system) for HCV RNA. None of the 41 anti-HCV-negative haemodialysis patients were shown to be viraemic. Routine HCV RNA testing appears not to be necessary in anti-HCV-negative haemodialysis patients.

  15. Origem e distribuição do nervo isquiático no veado-catingueiro (Mazama gouazoubira Origin and distribution of the sciatic nerve in catingueiro-deer (Mazama gouazoubira

    Directory of Open Access Journals (Sweden)

    Tracy Martina M. Martins

    2013-02-01

    Full Text Available Este estudo teve como objetivo descrever a origem e a distribuição do nervo isquiático no veado-catingueiro (Mazama gouazoubira. Dois animais da espécie, obtidos post mortem por atropelamento em rodovia, foram utilizados para o estudo, obedecendo aos critérios da Lei Vigente (Lei 1.153/95. Através da dissecação, a pele foi completamente removida e os animais foram fixados em solução aquosa de formaldeído a 10%. Através de um acesso dorso-lateral, os músculos glúteo superficial, bíceps femoral e glúteo médio foram seccionados no seu local de inserção e rebatidos. Desta forma foi possível visualizar a origem e a distribuição do nervo isquiático, em ambos os antímeros dos animais. As imagens foram registradas com câmera fotográfica digital (Câmera Sony a200, 10.2mpx e os resultados foram descritos com base na Nomina Anatômica Veterinária. Os dados da origem do nervo isquiático nos dois espécimes estudados mostraram que esta ocorre a partir dos ramos ventrais de L6 e S1, podendo ter contribuição de S2. Após a sua emergência pelo forame isquiático maior, em ambos os antímeros, o nervo isquiático fornece ramos para suprir os músculos glúteo médio, glúteo profundo, glúteo superficial, gluteobíceps, bíceps da coxa, semimembranoso, semitendinoso e gastrocnêmio. Próximo ao meio da coxa o nervo isquiático divide-se em nervo tibial e nervo fibular comum os quais inervam os músculos da região distal do membro pélvico. Além disso, o nervo cutâneo caudal da sura pode se originar dos nervos fibular comum ou do nervo tibial. Em conclusão, nos espécimes de Mazama gouazoubira estudados, o nervo isquiático teve sua origem a partir dos ramos ventrais espinais de L6 e S1, podendo ou não ter a contribuição de S2. Na sua distribuição originam-se o nervo glúteo caudal, o nervo cutâneo femoral caudal e ramos musculares, que, conjuntamente inervam os músculos glúteo médio, glúteo profundo, gl

  16. Karakteristik Inovasi Kebijakan Kantong Plastik Tidak Gratis Bagi Ibu Rumah Tangga Di Kota Bandung

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    Meria Octavianti

    2016-12-01

    Full Text Available Bandung become one of the pilot areas of “Kantong Plastik Tidak Gratis” policy which is a pilot project to resolve the plastic garbage problem in Indonesia. At trial implementation of this policy, the mothers of households in the Bandung City, which is the main target of the policy, are required to bring their own shopping bags or have to spend money to pay for plastic bags that they will use. As an innovation, this policy has five characteristics that can be assessed to determine whether the policy can be easily accepted or difficult. According to Rogers, the five policy are relative advantage, compatibility, complexity, trialability, and observability (1983. Accordingly, this study aims to reveal how the assessment of mother - housewife in the city of Bandung on the five characteristics of innovation policy. The theory used as the basis of this research is the theory Innovation Diffusion from Everett M. Rogers. Survey method used in this research, with distributing questionnaires to 103 housewives in Bandung, which has been selected by using multistage cluster sampling technique to get primary data. Moreover, interviews and literature study conducted to obtain secondary data in this study. The results showed that the characteristics of innovation policy consisting of relative advantage, compatibility, triability, and observability overall rated high by mothers of households in Bandung City. While the characteristics of the complexity of the policy rated low because the majority of mothers of households think that this policy is easy to apply. It can be concluded that the characteristics of innovation policy is considered to be good by the mother of households in Bandung City . Kota Bandung dijadikan salah satu tempat uji coba dari kebijakan kantong plastik tidak gratis yang merupakan pilot project untuk mengatasi permasalahan sampah plastik di Indonesia. Pada pelaksanaan uji coba kebijakan ini, ibu-ibu rumah tangga di Kota Bandung, yang

  17. [Determination of drug resistance mutations of NS3 inhibitors in chronic hepatitis C patients infected with genotype 1].

    Science.gov (United States)

    Şanlıdağ, Tamer; Sayan, Murat; Akçalı, Sinem; Kasap, Elmas; Buran, Tahir; Arıkan, Ayşe

    2017-04-01

    Direct-acting antiviral agents (DAA) such as NS3 protease inhibitors is the first class of drugs used for chronic hepatitis C (CHC) treatment. NS3 inhibitors (PI) with low genetic barrier have been approved to be used in the CHC genotype 1 infections, and in the treatment of compensated liver disease including cirrhosis together with pegile interferon and ribavirin. Consequently, the development of drug resistance during DAA treatment of CHC is a major problem. NS3 resistant variants can be detected before treatment as they can occurnaturally. The aim of this study was to investigate new and old generation NS3 inhibitors resistance mutations before DAA treatment in hepatitis C virus (HCV) that were isolated from CHC. The present study was conducted in 2015 and included 97 naive DAA patients infected with HCV genotype 1, who were diagnosed in Manisa and Kocaeli cities of Turkey. Magnetic particle based HCV RNA extraction and than RNA detection and quantification were performed using commercial real-time PCR assay QIASypmhony + Rotorgene Q/ArtusHCV QS-RGQ and COBAS Ampliprep/COBAS TaqMan HCV Tests. HCV NS3 viral protease genome region was amplified with PCR and mutation analysis was performed by Sanger dideoxy sequencing technique of NS3 protease codons (codon 32-185). HCV NS3 protease inhibitors; asunaprevir, boceprevir, faldaprevir, grazoprevir, pariteprevir, simeprevir and telaprevir were analysed for resistant mutations by Geno2pheno-HCV resistance tool. HCV was genotyped in all patients and 88 patients (n= 88/97, 91%) had genotype 1. Eight (n= 8/97, 8.2%) and 80 (n= 80/97, 82.4%) HCC patients were subgenotyped as 1a and 1b, respectively. Many aminoacid substitutions and resistance mutations were determined in 39/88 (44%) patients in the study group. Q80L, S122C/N, S138W were defined as potential substitutions (6/88 patients; 7%); R109K, R117C, S122G, I132V, I170V, N174S were described as potential resistance (34/88 patients; 39%); V36L, T54S, V55A, Q80H were

  18. Pengembangan Instrumen Ranah Kognitif pada Pokok Bahasan Fluida Statis SMA/MA

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    Mukarramah Mustari

    2016-04-01

    tes pilihan jamak dan tes uraian. Instrumen yang dikembangkan pada aspek kognitif berupa tes pilihan jamak dan uraian sampai pada taraf kompetensi Bloom C1 sampai dengan C6 pada pokok bahasan Fluida Statis. Desain Penelitian ini menggunakan prosedur pengembangan Reaserch and Depelopment (R&D dari Borg and Gall yang diadopsi oleh Sugiono yakni sampai pada tahap ke tujuh berupa yang terdiri dari: potensi dan masalah, pengumpulan data, desain produk, validasi desain, revisi desain, uji coba produk, revisi produk. Pengumpulan data diperoleh dari hasil validasi ahli instrumen, respon guru, dan uji coba produk, kemudian dianalisis dengan deskriptif kuantitatif. Hasil analisis pengembangan instrumen dapat disimpulkan bahwa instrumen ranah kognitif pada pokok bahasan fluida statis SMA/MA sangat baik untuk digunakan oleh guru dalam penilaian kompetensi peserta didik Kata Kunci: evaluation instrument, fluida statis, ranah kognitif, reaserch and depelopment (R&D

  19. Overdenture dengan Pegangan Telescopic Crown

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    Pambudi Santoso

    2014-06-01

    Full Text Available Kaitan presisi merupakan alat retensi mekanis yang menghubungkan antara satu atau lebih pegangan gigi tiruan, yang bertujuan untuk menambah retensi dan/atau stabilisasi. Kaitan presisi dapat digunakan secara luas pada gigi tiruan cekat, gigi tiruan sebagian lepasan, overdenture, implant untuk retensi overdenture, dan protesa maksilo fasial. Overdenture dengan kaitan presisi dapat membantu dalam pembagian beban kunyah, meminimalkan trauma pada gigi pegangan dan jaringan lunak, meminimalkan resorbsi tulang, dan meningkatkan estetik dan pengucapan suara. Salah satu jenis dari kaitan presisi adalah telescopic crown, terdiri dari 2 macam mahkota, yaitu mahkota primer yang melekat secara permanen pada gigi penyangga, dan mahkota sekunder yang melekat pada gigi tiruan. Tujuan pemaparan kasus ini adalah untuk memberikan informasi tentang rehabilitasi pasien edentulous sebagian rahang atas dengan telescopic crown..  Pasien wanita berusia 45 tahun datang ke klinik prostodonsia RSGM Prof.Soedomo dengan keluhan ingin dibuatkan gigi tiruan. Pasien kehilangan gigi 11 12 15 16 17 21 22 24 25 26 dan 27 yang diindikasikan untuk pembuatan overdenture gigi tiruan sebagian lepasan (GTS kerangka logam dengan pegangan telescopic crown pada gigi 13 dan 14 dengan sistem parallel-sided crown. Tahap-tahap pembuatan telescopic crown yaitu mencetak model study dengan catatan gigit pendahuluan. Perawatan saluran dilakukan pada akar gigi 13, dilanjutkan pemasangan pasak fiber serta rewalling dinding bukal. Gigi 13 dan 14 dilakukan preparasi mahkota penuh, dilanjutkan dengan pencetakan model kerja untuk coping primer dan kerangka logam dengan metode double impression. Coping primer disementasi pada gigi penyangga, dilanjutkan pasang coba coping sekunder beserta kerangka logam. Selanjutnya dilakukan pencatatan gigit, pencetakan model kerja, penyusunan gigi dan pasang coba penyusunan gigi pada pasien. Prosedur dilanjutkan dengan proses di laboratorium, serta insersi pada

  20. APLIKASI ONLINE PUBLIC ACCESS CATALOQUE (OPAC BERBASIS ANDROID SEBAGAI SARANA TEMU KEMBALI INFORMASI DI PERPUSTAKAAN UNIVERSITAS PENDIDIKAN GANESHA

    Directory of Open Access Journals (Sweden)

    Putu Tika Parmawati

    2016-08-01

    Full Text Available Abstrak Penelitian ini bertujuan untuk mengembangkan perangkat lunak aplikasi Online Public Access Cataloque (OPAC berbasis android. Jenis penelitian ini merupakan Research and Development (R & D dengan metode pengembangan menggunakan model prototyping. Pengembangan sistem informasi layanan audio visual berbasis video streaming dengan enam tahap, yaitu : 1 Tahap pengumpulan kebutuhan dan perbaikan, 2 Tahap perancangan desain cepat (desain awal, 3 Tahap membangun prototipe, 4 Tahap evaluasi prototype, 5 Tahap perbaikan prototype, dan 6 Tahap rekayasa produk. Penentuan tingkat kelayakan aplikasi Online Public Access Cataloque (OPAC berbasis android berdasarkan uji validasi ahli bidang teknologi informasi dan uji coba terbatas pada pengguna. Hasil uji coba sebagai berikut : 1 Pengembangan aplikasi Online Public Access Cataloque (OPAC berbasis android sudah sesuai dengan spesifikasi yang telah ditentukan sebagai aplikasi penelusuran informasi koleksi buku teks umum secara online melalui smartphone. 2 Indikator penilaian dari program ini adalah kebenaran atau ketepatan operasional sistem, ketegaran, keterluasan, keterpakaian ulang, efisiensi atau kinerja, portabilitas, integritas, modularitas, keterbacaan mendapat kualifikasi cukup baik, sedangkan verifikasi mendapat kualifikasi baik. 3 Secara umum dari hasil penilaian tersebut aplikasi OPAC berbasis android ini cukup layak untuk digunakan sebagai alternatif pelengkap pemberian layanan penelusuran informasi koleksi buku teks umum di Perpustakaan Undiksha. Kata Kunci: OPAC, android, dan temu kembali informasi Abstract Aim of this study to develop the software of Online Public Access Cataloque (OPAC based on android. Research and Development (R & D design was applied in this study which was developed through prototyping models. The software was constructed through six stages, namely: 1 needs analysis and repairment, 2 rapid design (preliminary design, 3 prototypes building, 4 prototype evaluation, 5

  1. PARTICULAR OF THE BONE METABOLISM IN CHILDREN WITH THE EXTREMITIES’ FRACTURES

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    T. A. Galiatina

    2013-01-01

    Full Text Available 35 children with extremities’ long bones fractures of the different localization were examined. The medium age (10.5 ± 2.0 years. The control group consisted of 35 healthy children: without pathology of the supporting-motor apparatus, medium age 10.5 ± 3.0. The single study of the systemic and ionized calci-um, phosphorus, magnesium and alkaline concentration and phosphatase’s activity in the blood serum was realized using automatic analyzers «Cobas 6000 SWA» (Roche Diagnostics, Switzerland.The forming and bone resorption process activity was appreciated according to the P1NP (N-terminal propeptide of type I collagen content in the blood serum, osteocalcin аnd β-СrossLaps (β-isomerized carboxy-terminal cross-linking region of type I collagen on the modular platform «Cobas 6000 SWA» (Roche Diagnostics,Switzerland. The mineral turnover’s regulation was determined by parathyroid hor-mone, thyrocalcitonin and 25(ОН-D3 in the blood serum. The growth process activity was determined by content of the somatotropic hormone in the blood serum. Osteocalcin and somatotropic hormone de-termination was done by analyzer «Immulite One» (USА.The statistical processing of the obtained results was carried out with application program package Statistica 6.0 for Windows. The distribution normalcy control was performed using the Kolmogorov-Smirnov's test. Data were presented as Ме (LQ–UQ, where Ме is median, (LQ–UQ is interquartile dis-persion. To reveal the differences between groups concerning quantitative readings the Mann–Whitney and Craskell–Wallace tests were used. The disparities were counted as statistically significant in р < 0.05. The correlation analysis was carried out by means of Spearman criterion.Children with extremities’ long bones fractures demonstrated the decrease of the bony tissue synthesis markers P1NP and calcium ions in the blood serum that speaks for the relative predominance of the resorptive activity of

  2. DESAIN DAN PEMBUATAN MESIN PENGERING LADA DENGAN MENGGUNAKAN PEMANAS UAP BERBAHAN BAKAR KAYU LIMBAH

    Directory of Open Access Journals (Sweden)

    A. Muhammad Idkhan

    2016-12-01

    ,pemanfaatanya menggunakan prinsip perpindahan panas. Uap panas masuk ke oven melalui pipa inputkemudian masuk ke radiator dan panas bersirkulasi didalam oven untuk mengeringkan lada dan menurunkan kadar air. Penelitian yang dilakukan adalah penelitian desain dan eksperimen berupa kajian teoritis, mendesain mesin, dan membuat mesin pengering lada. Pembuatan mesin  dan uji coba laboratorium dilakukan di Laboratorium Pendidikan Teknik Mesin FT UNM dan uji coba lapangan dilaksanakan di Desa Salassae Kecamatan Bulukumpa Kabupaten Enrekang. Pengeringan yang dilaksanakan selama enam jam menghasilkan lada yang berkadar air sebelas koma sembilan, biji lada bentuknya utuh tanpa kisut dengan warna yang kurang lebih seragam.Dengan adanyamesin pengering lada diharapkan memberi manfaat pada proses pengawetan hasil panen sehingga masyarakat tidak lagi bergantung pada cuaca untuk melakukan pengeringan, mempercepat proses pengeringan dan meningkatkan kualitas lada kering.Kata Kunci: Mesin Pengering, Lada, Pemanas uap

  3. Avaliação de diferentes métodos imunoturbidimétricos para determinação de albumina urinária: impacto na classificação dos estágios da nefropatia diabética Evaluation of different immunoturbidimetric methods to measure urinary albumin: impact in the classification of diabetic nephropathy stages

    Directory of Open Access Journals (Sweden)

    Andrea Elisabet Wendland

    2007-12-01

    Full Text Available INTRODUÇÃO: A nefropatia diabética (ND acomete até 40% dos pacientes diabéticos e o diagnóstico precoce pode evitar a evolução para estágios avançados. O rastreamento deve ser realizado pela medida de albumina urinária (AlbU utilizando-se o método quantitativo sensível. OBJETIVO: Avaliar diferentes métodos imunoturbidimétricos de determinação de AlbU para a classificação dos estágios da ND. MATERIAL E MÉTODO: A albumina foi dosada em 167 urinas (65 urinas de 24 h e 102 amostras casuais por dois métodos imunoturbidimétricos: kit Aptec-BioSys, ADVIA® 1650 Bayer (AlbUAdvia e kit MAlb Urin-Pack Bayer®, CobasMira® Roche(AlbUCobas. AlbUCobas foi definido como método comparativo e utilizado para classificar as amostras em normoalbuminúricas (albuminúria 300 mg/24 h ou > 174 mg/l, n = 31. Os coeficientes de variação (CV intra e interensaio, sensibilidade e linearidade dos métodos foram calculados. As concordâncias analítica e diagnóstica foram analisadas por regressão Deming, gráficos de Bland-Altman e por coeficiente kappa. RESULTADOS: Os CVs intra e interensaio foram BACKGROUND: Diabetic nephropathy (DN affects up to 40% of diabetic patients and must be screened by the measurement of urinary albumin with a sensitive quantitative method. OBJECTIVE: To evaluate the impact of different immunoturbidimetric methods to measure albuminuria in the classification of DN stages. MATERIAL AND METHOD: Albumin was measured in 167 urine samples (65 24 h samples and 102 casual samples by two immunoturbidimetric methods: Aptec BioSys, ADVIA® 1650 Bayer (AlbUAdvia and Malb Urin-Pack Bayer®, CobasMira® Roche (AlbUCobas. AlbUCobas was definedas the comparative method used to classify the samples in: normoalbuminuric (albuminuria 300 mg/24 h or > 174 mg/l; n = 31. The intra and interassay coefficients of variation (CVs, sensitivity and linearity of each method were calculated and the analytical and diagnostic agreements were

  4. PENGEMBANGAN BAHAN AJAR KOMIK IPA DENGAN PENANAMAN NILAI BUDAI PADA SISWA KELAS IV SEKOLAH DASAR

    Directory of Open Access Journals (Sweden)

    Yunita Sari

    2017-09-01

    Full Text Available Abstrak. Masalah yang sering dihadapi pada siswa sekolah dasar dalam pembelajaran ilmu pengetahuan alam adalah kesulitan memahami materi yang disajikan dalam bahan ajar IPA yang digunakan di sekolah dan penggunaan media pembelajaran yang kurang menarik. Media yang ada sifatnya yang terbatas membuat siswa malas belajar. Penelitian ini bertujuan untuk mendapatkan gambaran karakteristik, kevalidan, keefektifan, dan kepraktisan produk bahan ajar komik yang dikembangkan dalam pembelajaran IPA materi Bagian-bagian tumbuhan di kelas IV Sekolah Dasar. Subjek uji coba pada penelitian adalah kelas IV SDN Beji 03 dengan peserta didik sejumlah 21 siswa. Desain uji coba produk dalam pengembangan bahan ajar komik IPA adalah Pretest-Posttest Control Group Design. Jenis penelitian pengembangan ini dengan menggunakan model Borg and Gall. Perangkat yang dikembangkan meliputi: Silabus, Rencana Pelaksanaan Pembelajaran, Komik Ilmu Pengetahuan Alam, dan Tes Prestasi Belajar Materi Bagian-bagian tumbuhan. Data diperoleh melalui lembar pengamatan dan tes prestasi belajar materi bagian-bagian tumbuhan. Hasilnya diolah secara deskriptif, menggunakan uji ketuntasan, uji banding dan uji peningkatan untuk mengetahui efektivitas pembelajaran. Hasil penelitian ini menunjukkan penilaian validator terhadap perangkat pembelajaran pada kategori valid, kemampuan guru mengelola pembelajaran termasuk kategori praktis. Implementasi perangkat ini menghasilkan nilai rata-rata tes prestasi belajar kelas eksperimen lebih dari kriteria ketuntasan minimal yang ditentukan, kelas eksperimen memperoleh rata-rata prestasi belajar lebih baik dari rata-rata nilai kelas kontrol, uji peningkatan tes prestasi belajar kelas eksperimen dengan kelas kontrol kategori sedang, peningkatan nilai-nilai budai dari kategori belum terlihat meningkat pada kategori membudaya.  Kesimpulan penelitian ini adalah bahwa bahan ajar komik IPA efaktif digunakan dalam pembelajaran.Kata kunci: bahan ajar komik IPA

  5. Analgesic effect of coconut shell (Cocos nucifera L liquid smoke on mice

    Directory of Open Access Journals (Sweden)

    Meircurius Dwi C.S

    2012-09-01

    selulosa, petosan, lignin, solvent, uronat unhidrat, nitrogen dan air. Salah satu bahan aktif dalam tempurung kelapa adalah phenyl propanoid (terdapat dalam struktur lignin dan guaiakol. Phenyl propanoid dan guaiakol adalah suatu senyawa fenol yang mempunyai sifat sebagai antioksidan, antiseptic, anti-inflamasi, anastesi dan analgesik. Liquid smoke tempurung kelapa (Cocos nucifera Lmengandung senyawa fenol yang dapat mengikat komponen dalam konversi asam arakhidonat menjadi prostaglandin. Tujuan: Studi ini bertujuan untuk meneliti efek analgesik dari liquid smoke tempurung kelapa (Cocos nucifera L. Metode: Penelitian ini adalah eksperimental laboratoris dengan jenis post test only control group design pada mencit (Mus musculus jantan usia 2-3 bulan dengan berat badan 20-30gram. Kelompok kontrol dan perlakuan terdiri dari 7 hewan coba. Kelompok kontrol diberi aquades 0.01ml/bb (ml/gr (po dan setelah 30 menit diberi asam asetat 0.6% 0.01ml/bb (ml/gr (ip. Kelompok perlakuan diberi liquid smoke tempurung kelapa (Cocos nucifera L dengan konsentrasi 25%, 50% and 100%. Efek analgesik ditentukan dengan melihat penurunan writhing reflex (liukan atau geliat tubuh hewan coba yang dihitung setiap 5 menit selama 30 menit. Hasil: Terdapat perbedaan yang bermakna jumlah writhing reflex pada pemberian liquid smoke tempurung kelapa konsentrasi 25%, 50% dan 100%. Semakin tinggi konsentrasi liquid smoke, semakin tinggi pula efek analgesic yang ditimbulkan. Kesimpulan: Liquid smoke tempurung kelapa mempunyai efek analgesik.

  6. PENGEMBANGAN APLIKASI MANAJEMEN PROYEK SECARA GRAFIS BERBASIS WEB MENGGUNAKAN METODE DIAGRAM PRESEDENSI

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    Suhadi Lili

    2004-07-01

    operasi komputer, dan tidak terhambat oleh restriksi internet (sering kali berupa firewall. Untuk mewujudkan sifat-sifat tersebut, aplikasi ini disusun dengan teknologi J2EE, Java, Web Service, dan untuk enkapsulasi data digunakan struktur XML karena fleksibel dan mampu merepresentasikan struktur hirarki data berbentuk tree. Dalam perancangan aplikasi ini digunakan bahasa UML untuk memodelkan aplikasi, sedangkan pemodelan data menggunakan Conceptual Data Model dan Physical Data Model Fitur utama yang dibuat untuk manajemen proyek pada aplikasi ini adalah komponen Gantt Chart yang menerapkan metode Diagram Presedensi. Komponen ini dapat membantu manajer untuk melakukan manajemen proyek dengan menyediakan fitur untuk menggambarkan secara visual pelaksanaan proyek dengan elemen-elemen Gantt Chart yaitu : Task Sheet, Diagram Pane, Time Line, dan Work Calendar. Dengan penerapan metode Diagram Presedensi akan mempermudah perencana proyek dalam penentuan jadwal start dan finish dari task-task penyusun proyek Aplikasi yang telah dibuat telah mengalami uji coba untuk berjalan secara multiuser, dan dari beberapa kali skenario uji coba yang dijalankan aplikasi sudah berjalan sesuai dengan spesifikasi yang telah ditetapkan. Kata Kunci : Project Management, Gantt Chart, Diagram Presedensi

  7. Fecal electrolyte testing for evaluation of unexplained diarrhea: Validation of body fluid test accuracy in the absence of a reference method.

    Science.gov (United States)

    Voskoboev, Nikolay V; Cambern, Sarah J; Hanley, Matthew M; Giesen, Callen D; Schilling, Jason J; Jannetto, Paul J; Lieske, John C; Block, Darci R

    2015-11-01

    Validation of tests performed on body fluids other than blood or urine can be challenging due to the lack of a reference method to confirm accuracy. The aim of this study was to evaluate alternate assessments of accuracy that laboratories can rely on to validate body fluid tests in the absence of a reference method using the example of sodium (Na(+)), potassium (K(+)), and magnesium (Mg(2+)) testing in stool fluid. Validations of fecal Na(+), K(+), and Mg(2+) were performed on the Roche cobas 6000 c501 (Roche Diagnostics) using residual stool specimens submitted for clinical testing. Spiked recovery, mixing studies, and serial dilutions were performed and % recovery of each analyte was calculated to assess accuracy. Results were confirmed by comparison to a reference method (ICP-OES, PerkinElmer). Mean recoveries for fecal electrolytes were Na(+) upon spiking=92%, mixing=104%, and dilution=105%; K(+) upon spiking=94%, mixing=96%, and dilution=100%; and Mg(2+) upon spiking=93%, mixing=98%, and dilution=100%. When autoanalyzer results were compared to reference ICP-OES results, Na(+) had a slope=0.94, intercept=4.1, and R(2)=0.99; K(+) had a slope=0.99, intercept=0.7, and R(2)=0.99; and Mg(2+) had a slope=0.91, intercept=-4.6, and R(2)=0.91. Calculated osmotic gap using both methods were highly correlated with slope=0.95, intercept=4.5, and R(2)=0.97. Acid pretreatment increased magnesium recovery from a subset of clinical specimens. A combination of mixing, spiking, and dilution recovery experiments are an acceptable surrogate for assessing accuracy in body fluid validations in the absence of a reference method. Copyright © 2015 The Canadian Society of Clinical Chemists. Published by Elsevier Inc. All rights reserved.

  8. Analytical validation of Gentian NGAL particle-enhanced enhanced turbidimetric immunoassay (PETIA

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    Gian Luca Salvagno

    2017-08-01

    Full Text Available Objectives: This study was designed to validate the analytical performance of the new Gentian particle-enhanced enhanced turbidimetric immunoassay (PETIA for measuring neutrophil gelatinase-associated lipocalin (NGAL in serum samples. Design and methods: Analytical validation of the Gentian NGAL assay was carried out on a Roche Cobas c501 and was based on assessment of limit of blank (LOB, limit of detection (LOD, functional sensitivity, imprecision, linearity and concordance with the BioPorto NGAL test. Results: The LOB and LOD of Gentian NGAL were found to be 3.8 ng/mL and 6.3 ng/mL, respectively. An analytical coefficient of variation (CV of 20% corresponded to a NGAL value of 10 ng/mL. The intra-assay and inter-assay imprecision (CV was between 0.4 and 5.2% and 0.6 and 7.1% and the total imprecision (CV was 3.7%. The linearity was optimal at NGAL concentrations between 37 and 1420 ng/mL (r=1.00; p<0.001. An excellent correlation was observed between values measured with Gentian NGAL and BioPorto NGAL in 74 routine serum samples (r=0.993. The mean percentage bias of the Gentian assay versus the Bioporto assay was +3.1% (95% CI, +1.6% to +4.5%. Conclusions: These results show that Gentian NGAL may be a viable option to other commercial immunoassays for both routine and urgent assessment of serum NGAL. Keywords: Neutrophil gelatinase-associated lipocalin, NGAL, Analytical validation, Acute kidney injury

  9. Hubungan antara Tayangan Erotika di Pornomedia terhadap Perilaku Seksual Siswa

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    Zunita Nur Cahyani

    2016-12-01

    Full Text Available Abstract: The mass media which contain of erotic impression can stimulate teenagers who want to know everything about sexual and want to imitate what they hear and look from mass media as a part of learning process.The purpose of this research is to determine the relationship between the erotical exposure on pornmedia to the sexual behaviour of students. The research design is descriptive correlational on subjects totalling 87 people. The instruments used is the scale of the erotical exposure and sexual behaviour scale which contain 46 items on each scale. Trials carried out to 40 people with the validity 0,312 and reliability 0,947 and 0,953. The result of research shows the correlation of rxy = 0,212,  p = 0,049 < 0,05 it means that there is a correlation between the erotical exposure on pornomedia with student’s sexual behaviour. Abstrak: Media massa yang mengandung tayangan erotika dapat merangsang remaja yang ingin tahu tentang hal yang berbau seksual dan ingin meniru apa yang ia dengar dan lihat dari media massa sebagai bagian dari proses belajar. Tujuan penelitian ini adalah untuk mengetahui hubungan antara tayangan erotika di pornomedia terhadap perilaku seksual siswa. Rancangan penelitian yang digunakan adalah deskriptif korelasional pada subyek penelitian yang berjumlah 87 orang. Instrumen yang digunakan adalah skala tayangan erotika dan skala perilaku seksual dengan jumlah 46 butir pada masing-masing skala. Uji coba dilakukan kepada 40 orang yang menghasilkan validitas butir sebesar 0,312 serta reliabilitas sebesar 0,947 dan 0,953. Hasil uji penelitian menunjukkan korelasi sebesar rxy = 0,212,  p = 0,049 < 0,05 artinya ada hubungan antara tayangan erotika di pornomedia dengan perilaku seksual siswa.

  10. Operational impact of using a vanadate oxidase method for direct bilirubin measurements at an academic medical center clinical laboratory

    Directory of Open Access Journals (Sweden)

    Neha Dhungana

    2017-08-01

    Full Text Available Objectives: The aim of this study was to compare the operational impact of using vanadate oxidase versus diazo direct bilirubin assays for an academic medical center patient population. Design and methods: Retrospective study was done over an approximately 3.5 year period. The main automated chemistry instrumentation was a Roche Diagnostics cobas 8000 line. The Roche Direct Bilirubin assay was compared to Diazyme Laboratories Direct Bilirubin Assay and Randox Laboratories Direct Bilirubin assay using manufacturer's guidelines for hemolysis index, lipemia index, and analytical measurement range (AMR. Results: Retrospective data was analyzed for 47,333 serum/plasma specimens that had clinical orders for direct bilirubin. A total of 5943 specimens (12.6% exceeded the hemolysis index limit for the Roche method compared to only 0.2% and 0.05% of specimens for the Diazyme and Randox methods, respectively. The impact was particularly large on patients less than 2 years old, for which 51.3% of specimens exceeded the hemolysis index for the Roche method. A total of 1671 specimens (3.5% exceeded the lipemia index limit for the Roche method compared to less than 0.1% for the Randox method. Lastly, 988 (2.1% of specimens had direct bilirubin concentrations exceeding the upper AMR limit of 10 mg/dL [171 µmol/L] for the Roche assay compared to less than 1% of specimens for the vanadate oxidase methods. Conclusions: Vanadate oxidase direct bilirubin methods offer advantages over diazo methods in terms of less interference by hemolysis and lipemia, as well as wider AMR. The advantages are particularly evident for neonatal and infant populations. Keywords: Bilirubin, Clinical chemistry tests, Hemolysis, Hyperlipidemias, Jaundice, Photometry

  11. Investigation de l'anisotropie du gap supraconducteur dans les composes Ba(Fe(1-x)Co(x))2As2, Ba(1-x)K(x)Fe2As2, LiFeAs et Fe1-deltaTe(1-x)Se(x)

    Science.gov (United States)

    Reid, Jean-Philippe

    ommaire La structure du gap supraconducteur et sa modulation sont intimement liees au potentiel d'interaction responsable de l'appariement des electrons d'un supraconducteur. Ainsi, l'etude de la structure du gap-SC et de sa modulation permettent de faire la lumiere sur la nature du mecanisme d'appariement des electrons. A cet egard, les resultats experimentaux des supraconducteurs a base de fer ne cadrent pas dans un seul ensemble, ce qui est en opposition au gap-SC universel des cuprates. Dans ce qui suit, nous presenterons une etude systematique du gap-SC pour plusieurs pnictides. En effet, en utilisant la conductivite thermique, une sonde directionnelle du gap-SC, nous avons ete en mesure de reveler la structure du gap-SC pour les composes suivants : Ba1-xKxFe 2As2, Ba(Fe1-xCo x)2As2, LiFeAs et Fe1-deltaTe 1-xSex. L'etude de ces quatre composes, de trois differentes familles structurales, a pu etablir un tableau partiel mais tres exhaustif de la structure du gap-SC de pnictides. En effet, tel qu'illustre dans cette these, ces quatre composes ne possedent aucun noeud dans leur structure du gap-SC a dopage optimal. Toutefois, a une concentration differente de celle optimale pour les composes K-Ba122 et Co-Ba122, des noeuds apparaissent sur la surface de Fermi, aux extremites 'du dome supraconducteur. Ceci suggere fortement que, pour ces composes, la presence de noeuds sur la surface de Fermi est nuisible a la phase supraconductrice. Mots-cles: Supraconducteurs a base de fer, Pnictides, Structure du gap supraconducteur, Conductivite thermique

  12. OPTIMASI PENCAPAIAN TARGET PADA SIMULASI PERENCANAAN JALUR ROBOT BERGERAK DI LINGKUNGAN DINAMIS

    Directory of Open Access Journals (Sweden)

    Yisti Vita Via

    2012-01-01

    Full Text Available Normal 0 false false false IN X-NONE X-NONE MicrosoftInternetExplorer4 /* Style Definitions */ table.MsoNormalTable {mso-style-name:"Table Normal"; mso-tstyle-rowband-size:0; mso-tstyle-colband-size:0; mso-style-noshow:yes; mso-style-priority:99; mso-style-qformat:yes; mso-style-parent:""; mso-padding-alt:0cm 5.4pt 0cm 5.4pt; mso-para-margin:0cm; mso-para-margin-bottom:.0001pt; mso-pagination:widow-orphan; font-size:11.0pt; font-family:"Calibri","sans-serif"; mso-ascii-font-family:Calibri; mso-ascii-theme-font:minor-latin; mso-fareast-font-family:"Times New Roman"; mso-fareast-theme-font:minor-fareast; mso-hansi-font-family:Calibri; mso-hansi-theme-font:minor-latin; mso-bidi-font-family:"Times New Roman"; mso-bidi-theme-font:minor-bidi;} Robot bergerak harus memiliki perencanaan jalur yang baik ketika menjalankan navigasi di lingkungan. Penelitian yang terakhir menangani permasalahan simulasi perencanaan jalur di lingkungan dengan kehadiran rintangan dan target yang bergerak. Teknik penghindaran rintangan dalam penelitian tersebut cukup baik namun jalur pencapaian target masih belum optimal. Penelitian ini memperbaiki algoritma Q-learning pada penelitian sebelumnya dengan menggunakan konsep Ant Colony. Pendekatan metode yang dilakukan bertujuan untuk mengoptimalkan pencapaian target. Prediksi pergerakan rintangan dan target juga digunakan untuk meningkatkan efektifitas pencapaian target. Hasil evaluasi uji coba berdasarkan jumlah skenario pelatihan, menunjukkan angka kegagalan metode yang diusulkan lebih kecil 22% dibandingkan metode sebelumnya. Sedangkan berdasarkan jumlah rintangan yang digunakan, angka kegagalan metode yang diusulkan lebih kecil 11% daripada metode sebelumnya. Hasil evaluasi waktu pencapaian target menunjukkan metode yang diusulkan rata-rata mempu mencapai target lebih lama 0,9 detik dari metode sebelumnya. Metode yang diusulkan mampu mencapai target lebih cepat pada pola pergerakan target yang linear.

  13. IMPLEMENTASI VIRTUAL PRIVATE NETWORK - WAN DALAM DUNIA BISNIS

    Directory of Open Access Journals (Sweden)

    Erma Suryani

    2007-01-01

    Full Text Available Dalam dunia bisnis, biasanya sebuah organisasi ingin membangun Wide Area Network (WAN untuk menghubungkan beberapa kantor cabangnya. Sebelum munculnya Virtual Private Network (VPN, mereka umumnya menggunakan ” leased line” yang mahal sehingga hanya perusahaan besar yang dapat memilikinya.VPN - WAN memberi solusi alternatif karena dapat mengurangi biaya pembuatan infrastruktur jaringan dan memotong biaya operasional dengan memanfaatkan failitas internet sebagai media komunikasinya. Perusahaan cukup menghubungi  Internet Service Provider (ISP terdekat untuk mendapatkan layanan ini.Setiap paket informasi yang dikirim dapat diakses, diawasi atau bahkan dimanipulasi oleh pengguna. Supaya komunikasi berjalan aman maka diperlukan protokol tambahan khusus yang dirancang untuk mengamankan data yang dikirim.  Dewasa ini sudah banyak perusahaan seperti : perusahaan manufaktur, distribusi dan retail; pertambangan minyak dan gas, telekomunikasi, finansial, pemerintahan serta industri transportasi yang menggunakan VPN karena fasilitas –fasilitas yang ditawarkan berupa remote access client, internetworking LAN to LAN serta akses yang terkontrol dengan biaya yang murah.  Uji coba yang dilakukan Miercom(LAB penyedia testing kinerja perangkat keras terhadap  Cisco 1841 membuktikan bahwa Cisco 1841 dapat  menopang suatu komunikasi dua arah, interkoneksi IP WAN kapasitas E1 dengan enkripsi 3DES yang dapat menunjang throughput sampai dengan 2 Mbps dalam koneksi E1 IP-WAN. Penggunaan  VPN akan meningkatkan efektivitas, efisiensi kerja serta skalabilitas perusahaan. Keuntungan lain yang didapat dari VPN adalah pada biaya pulsa yang jauh lebih murah dibandingkan dengan menggunakan” leased line”.Kata Kunci: VPN, WAN,  paket informasi, ISP,  remote access client, skalabilitas.

  14. MODULAR ANALYTICS: A New Approach to Automation in the Clinical Laboratory.

    Science.gov (United States)

    Horowitz, Gary L; Zaman, Zahur; Blanckaert, Norbert J C; Chan, Daniel W; Dubois, Jeffrey A; Golaz, Olivier; Mensi, Noury; Keller, Franz; Stolz, Herbert; Klingler, Karl; Marocchi, Alessandro; Prencipe, Lorenzo; McLawhon, Ronald W; Nilsen, Olaug L; Oellerich, Michael; Luthe, Hilmar; Orsonneau, Jean-Luc; Richeux, Gérard; Recio, Fernando; Roldan, Esther; Rymo, Lars; Wicktorsson, Anne-Charlotte; Welch, Shirley L; Wieland, Heinrich; Grawitz, Andrea Busse; Mitsumaki, Hiroshi; McGovern, Margaret; Ng, Katherine; Stockmann, Wolfgang

    2005-01-01

    MODULAR ANALYTICS (Roche Diagnostics) (MODULAR ANALYTICS, Elecsys and Cobas Integra are trademarks of a member of the Roche Group) represents a new approach to automation for the clinical chemistry laboratory. It consists of a control unit, a core unit with a bidirectional multitrack rack transportation system, and three distinct kinds of analytical modules: an ISE module, a P800 module (44 photometric tests, throughput of up to 800 tests/h), and a D2400 module (16 photometric tests, throughput up to 2400 tests/h). MODULAR ANALYTICS allows customised configurations for various laboratory workloads. The performance and practicability of MODULAR ANALYTICS were evaluated in an international multicentre study at 16 sites. Studies included precision, accuracy, analytical range, carry-over, and workflow assessment. More than 700 000 results were obtained during the course of the study. Median between-day CVs were typically less than 3% for clinical chemistries and less than 6% for homogeneous immunoassays. Median recoveries for nearly all standardised reference materials were within 5% of assigned values. Method comparisons versus current existing routine instrumentation were clinically acceptable in all cases. During the workflow studies, the work from three to four single workstations was transferred to MODULAR ANALYTICS, which offered over 100 possible methods, with reduction in sample splitting, handling errors, and turnaround time. Typical sample processing time on MODULAR ANALYTICS was less than 30 minutes, an improvement from the current laboratory systems. By combining multiple analytic units in flexible ways, MODULAR ANALYTICS met diverse laboratory needs and offered improvement in workflow over current laboratory situations. It increased overall efficiency while maintaining (or improving) quality.

  15. PERANCANGAN SISTEM PREDIKSI CHURN PELANGGAN PT. TELEKOMUNIKASI SELULER DENGAN MEMANFAATKAN PROSES DATA MINING

    Directory of Open Access Journals (Sweden)

    Rajesri Govindaraju

    2008-01-01

    Full Text Available The purpose of this research is to design a customer churn prediction system using data mining approach. This system is able to perform data integration, data cleaning, data transformation, sampling and data splitting, prediction model building, predicting customer churn, and show the results in certain agreed forms. Churn prediction variables were identified based on earlier research reports that include customer information, payment method, call pattern, complaint data, telecommunication services usage and change of telecommunication services usage behavior data. The preferred mining technique used is the classification with decision tree algorithm. The decision tree can present visual model which represents customer churn and non churn pattern behavior. This system was tested using Kartu Halo customer data in Bandung area and testing result showed 70,94% accuracy of the prediction model. Abstract in Bahasa Indonesia : Penelitian ini bertujuan merancang sistem prediksi churn pelanggan yang memanfaatkan proses data mining. Sistem yang dihasilkan dapat melakukan integrasi data, pembersihan data, transformasi data, sampling dan pemisahan data, konstruksi model prediksi, memprediksi churn pelanggan dan menampilkan hasil prediksi dalam format laporan tertentu yang diperlukan. Identifikasi variabel-variabel prediksi churn dilakukan berdasarkan model prediksi churn yang telah dikembangkan pada penelitian terdahulu yang antara lain mencakup informasi mengenai pelanggan, metode pembayaran, data percakapan, data penggunaan jenis-jenis layanan telekomunikasi dan data yang menggambarkan perubahan perilaku penggunaan layanan telekomunikasi tersebut. Teknik mining yang dipilih adalah teknik klasifikasi dengan algoritma decision tree. Decision tree menghasilkan model visual yang merepresentasikan pola perilaku pelanggan yang churn dan tidak churn. Uji coba sistem yang dilakukan menggunakan data pelanggan Kartu Halo daerah Bandung menghasilkan tingkat akurasi

  16. False-positive pregnancy test after transfusion of solvent/detergent-treated plasma.

    Science.gov (United States)

    Jilma-Stohlawetz, Petra; Wreford-Bush, Tim; Mills, Francesca; Davidson, Fiona; Kursten, Friedrich W; Jilma, Bernd; Birchall, Janet

    2017-12-01

    The transmission of pathogens, antibodies, and proteins is a possible consequence of blood product transfusion. A female patient had an unexpected positive serum β-human chorionic gonadotropin result, indicative of pregnancy, after she had received a transfusion with 1 unit of platelet concentrate, 4 units of red blood cells, and 4 units of pooled solvent/detergent-treated plasma (Octaplas). To investigate the possibility of passive transfusion of β-human chorionic gonadotropin from the plasma transfusion, one additional unit from the same batch was thawed and analyzed. To validate the β-human chorionic gonadotropin assay for use in solvent/detergent-treated plasma and to investigate any interference in the assay, dilution experiments were performed using the implicated plasma batch diluted with male and non-pregnant female sera. Also, plasma from a known pregnant woman was diluted with Octaplas (tested negative for β-human chorionic gonadotropin) and with a male serum to validate the assay for use in solvent/detergent-treated plasma. The implicated solvent/detergent-treated plasma had a mean β-human chorionic gonadotropin level of 91.5 mIU/mL. Results from the dilution experiments revealed an excellent correlation (r > 0.99) between β-human chorionic gonadotropin measurement in solvent/detergent-treated plasma and male serum and no over or under recovery of the expected results. Further measurements of β-human chorionic gonadotropin levels in the female recipient revealed an estimated half-life of 6 hours. This case demonstrates the importance of considering the possibility of passive transmission of analytes to a patient from the transfusion of blood products. Furthermore, the measurement of β-human chorionic gonadotropin is valid in solvent/detergent-treated plasma using a Roche Cobas analyzer. © 2017 AABB.

  17. MODEL PELATIHAN WIRAUSAHA JASA BOGA BERWAWASAN GENDER BAGI REMAJA PESANTREN

    Directory of Open Access Journals (Sweden)

    Siti Malikhah Towaf

    2016-02-01

    Full Text Available Abstract: A Model of Training on Culinary Enterprise Imbued with Gender Perspectives for Disciples of Pesantren. Pesantrens have strategic role in character building and internalizing a holistic and Islamic personality values such as: strong faith, obedience to Syariat and splendour in Akhlaq. Pesantrens concentrate in educating youngsters through yellow books studies which contribute to gender bias among santries. This study explores gender perspectives and entrepreneurship in pesantren and developed an entrepreneurship training model in culiner with gender perspectives. A qualitative approach with developmental design is used to design a training model by creating prototype of training model, trying it out and examining it in terms of effectivity, efficiency and appealling of the model. The data were collected by review litterature, documentary study, observation, interview and handing out an open ended questionaire. Those data were analized inductivelly and comparatively to describe gender perspective and entrepreneurship; and produce an entrepreneurship training model in culiner with gender perspectives which is ready to be implemented to the youngsters in pesantren as the target groups. Abstrak: Model Pelatihan Wirausaha Jasa Boga Berwawasan Gender bagi Remaja Pesantren. Pendekatan kualitatif dengan desain pengembangan digunakan untuk merancang model pelatihan wirausaha jasa boga berwawasan gender bagi remaja pesantren, dengan membuat prototipe, menguji coba dan mencermati sisi efektivitas, efisiensi dan daya tarik model pelatihan di tiga pesantren pedesaan dengan gaya hidup yang penuh kesederhanaan, di Kabupaten Malang. Pelatihan wirausaha jasa boga berwawasan gender bagi remaja pesantren, efektif memenuhi kebutuhan santri menambah wawasan tentang gender dan wirausaha, memberi keterampilan dalam tataboga; efisien dalam penggunaan waktu, tenaga dan bahan-bahan untuk praktik tata boga; dan menarik minat peserta.

  18. PENGEMBANGAN RUBRIK PENYEKORAN PADA ASESMEN OTENTIK UNTUK MATERI TABUNG

    Directory of Open Access Journals (Sweden)

    Astin Duwi Mutiara

    2017-10-01

    Full Text Available The purpose of this development study is to produce a scoring rubric on authentic assessment for tube material that meets the valid, practical, and reliable criteria. This development research uses the Plomp model. The result of this research is holistic scoring rubric and analytic on tube material with very valid value shown by percentage of score given by validator equal to 87,5%. The results of a limited trial show that the holistic and analytical rubrics on the tube material is quite practical and reliable. The value of this practicality is respectively indicated by the respondent response of holistic and analytical rubric users in the tube material by 80% and 78.33%. The scores reliability score of holistic and analytical rubric users on tube material was 0.738 and 0.868 respectively. Tujuan dari penelitian pengembangan ini adalah menghasilkan rubrik penyekoran pada asesmen otentik untuk materi tabung yang memenuhi kriteria valid, praktis, dan reliabel. Penelitian pengembangan ini menggunakan model Plomp. Hasil penelitian ini berupa rubrik penyekoran holistik dan analitik pada materi tabung dengan nilai sangat valid yang ditunjukkan oleh presentase skor yang diberikan validator sebesar 87,5%. Hasil uji coba secara terbatas menunjukkan bahwa rubrik holistik dan analitik pada materi tabung itu cukup praktis dan reliabel. Nilai kepraktisan ini secara berturut-turut ditunjukkan oleh respons angket pengguna rubrik holistik dan analitik pada materi tabung sebesar 80% dan 78,33 %. Nilai reliabilitas skor dari pengguna rubrik holistik dan analitik pada materi tabung secara berturut-turut sebesar 0,738 dan 0,868.

  19. A study of the relationship between albuminuria, proteinuria and urinary reagent strips.

    LENUS (Irish Health Repository)

    Collier, Geraldine

    2012-02-01

    BACKGROUND: The aims of this study were to examine the relationship between proteinuria and albuminuria and to assess the equivalence between the albumin to creatinine ratio (ACR) and the protein to creatinine ratio (PCR) at the cut-offs recommended by the National Institute for Health and Clinical Excellence (NICE) guidance on chronic kidney disease. The sensitivity and specificity of the reagent strips used in our laboratory for the detection of clinical proteinuria was also assessed. METHODS: Urine samples (n = 117) were screened for protein using the Bayer Multistix 10SG and read manually. Urinary total protein and creatinine was measured on the Roche P Modular by the benzethonium chloride and kinetic Jaffe methods, respectively. Urinary albumin was measured by immunoturbidimetry on the Roche Cobas Mira. RESULTS: The relationship between urinary protein and albumin loss was non-linear (P < 0.05). As urinary protein loss increased the percentage of albumin to total protein increased. At the NICE guidance recommended cut-offs for clinical proteinuria (ACR > or =30 mg\\/mmol and PCR > or =50 mg\\/mmol) there was one discordant result between ACR and PCR (ACR <30 mg\\/mmol and PCR >50 mg\\/mmol). The Bayer Multistix 10SG had a sensitivity and specificity of 97% and 62%, respectively, for the detection of clinical proteinuria compared with ACR. CONCLUSIONS: The proportion of urinary total protein attributable to albumin changes with concentration. There was only one discordant result between ACR and PCR: therefore either ratio may be used for the identification of clinical proteinuria. As a screening test for proteinuria, the Bayer Multistix 10SG had an acceptable sensitivity but poor specificity.

  20. DIPEPTIDYL PEPTIDASE 4 (DPP-4 INHIBITORS FOR THE TREATMENT OF TYPE 2 DIABETES MELLITUS

    Directory of Open Access Journals (Sweden)

    Erna Kristin

    2016-12-01

    Diabetes mellitus (DM merupakan penyakit kronis yang menyebabkan sekitar 1,5 juta kematian pada tahun 2012 menurut Organisasi Kesehatan Dunia (WHO. DM tipe 2 (DMT2 banyaknya 90% dari keseluruhan DM di seluruh dunia. Prevalensi DMT2 meningkat karena obesitas. Pedoman klinis merekomendasikan penggunaan metformin sebagai pengobatan lini pertama kecuali ada kontraindikasi, maka bisa diikuti dengan penambahan 1 atau 2 OADs, seperti sulfonilurea (SU, inhibitor alpha-glucosidase, atau thiazolidinediones (TZD. Baru-baru ini, obat baru golongan dipeptidyl peptidase 4 (DPP-4 inhibitor telah ditambahkan ke algoritma pengobatan. Dipeptidyl peptidase 4 (DPP-4 inhibitor inhibitor adalah kelas obat antidiabetes oral yang menghambat DPP-4 enzim. Sitagliptin, saxagliptin, vildagliptin dan linagliptin yang merupakan golongan dipeptidyl peptidase-4 (DPP-4 inhibitor tersedia untuk pengobatan diabetes tipe 2 di Indonesia dan banyak negara lainnya. DPP-4 inhibitor memiliki khasiat glikemik yang setara. DPP-4 inhibitor menghasilkan peningkatan moderat hemoglobin terglikasi (A1C. Namun uji coba head-to-head jumlahnya terbatas, dan tidak ada data tentang penggunaan penggunaan jangka panjang (lebih dari dua tahun keamanan, kematian, komplikasi diabetes, atau kualitas-hidup pasien. Meskipun DPP-inhibitor tidak digunakan sebagai terapi awal untuk mayoritas pasien dengan diabetes tipe 2, DPP-4 inhibitor dapat digunakan sebagai terapi tambahan di tipe 2 pasien diabetes yang tidak toleran, ada kontraindikasi, atau tidak terkontrol dengan penggunaan metformin, sulfonilurea, atau thiazolidinediones. Peran sebenarnya dari DPP-4 inhibitor di antara beberapa obat lainnya untuk DMT2 tidak begitu jelas. Hanya ada sejumlah kecil studi jangka panjang pada DPP-4 inhibitor menilai penurunan glikemik, kemanjuran, kejadian kardiovaskular, kematian, atau keamanan. Pada pasien dengan gagal ginjal (perkiraan laju filtrasi glomerulus [eGFR] <30 mL / menit kronis dapat menggunakan DPP-4 inhibitor, linagliptin

  1. Short-term Variability of Vitamin D-Related Biomarkers.

    Science.gov (United States)

    Lutsey, Pamela L; Parrinello, Christina M; Misialek, Jeffrey R; Hoofnagle, Andy N; Henderson, Clark M; Laha, Thomas J; Michos, Erin D; Eckfeldt, John H; Selvin, Elizabeth

    2016-12-01

    Quantifying the variability of biomarkers is important, as high within-person variability can lead to misclassification of individuals. Short-term variability of important markers of vitamin D metabolism is relatively unknown. A repeatability study was conducted in 160 Atherosclerosis Risk in Communities study participants (60% female, 28% black, mean age 76 years). Fasting serum was drawn at 2 time points, a median of 6 (range 3-13) weeks apart. Vitamin D binding protein (VDBP) and 25-hydroxyvitamin D [25(OH)D] were measured by LC-MS, fibroblast growth factor (FGF23) and parathyroid hormone (PTH) by enzyme-linked immunoassay, and calcium and phosphorus by Roche Cobas 6000. Free and bioavailable 25(OH)D were calculated. We calculated the within-person CV (CV W ), intraclass correlation coefficient (ICC), Spearman rank correlation coefficient (r), and percent reclassified. The CV W was lowest for calcium (2.0%), albumin (3.6%), 25(OH)D (6.9%), VDBP (7.0%) and phosphorus (7.6%); intermediate for free 25(OH)D (9.0%) and bioavailable 25(OH)D (9.9%); and highest for PTH (16.7%) and FGF23 (17.8%). Reclassification was highest for PTH, VDBP, and phosphorus (all 7.5%). The ICC and r were highest (≥0.80) for 25(OH)D, free 25(OH)D, bioavailable 25(OH)D and PTH, but somewhat lower (approximately 0.60-0.75) for the other biomarkers. Six-week short-term variability, as assessed by CV W , was quite low for VDBP, calcium and phosphorus, but fairly high for FGF23 and PTH. As such, multiple measurements of FGF23 and PTH may be needed to minimize misclassification. These results provide insight into the extent of potential misclassification of vitamin D markers in research and clinical settings. © 2016 American Association for Clinical Chemistry.

  2. Cervical human papilloma virus (HPV) DNA primary screening test: Results of a population-based screening programme in central Italy.

    Science.gov (United States)

    Passamonti, Basilio; Gustinucci, Daniela; Giorgi Rossi, Paolo; Cesarini, Elena; Bulletti, Simonetta; Carlani, Angela; Martinelli, Nadia; Broccolini, Massimo; D'Angelo, Valentina; D'Amico, Maria Rosaria; Di Dato, Eugenio; Galeazzi, Paola; Malaspina, Morena; Spita, Nicoletta; Tintori, Beatrice; Giaimo, Maria Donata

    2017-09-01

    Objective To present the results of the first and second round human papilloma virus (HPV)-based screening programme in the Umbria region after three years. Methods From August 2010 to November 2011, the entire female population aged 35-64 in a local health district was invited for HPV testing (HPV-DNA cobas4800 on a liquid-based cytology sample). HPV-negative women were re-invited after three years. For HPV-positive women, a slide was prepared and interpreted. Positive cytologies were referred to colposcopy; negatives were referred to repeat HPV after one year. If HPV was persistently positive, women were referred to colposcopy; if negative, to normal screening. Indicators of the first and second round are compared with those of cytology screening in the same area in the preceding three years. Results Participation was 56.5%, the same as cytology (56.6%). HPV-positivity was 6.4% (396/6272), cytology triage positivity was 35.6%; 251 cytology negative women were referred to one-year HPV retesting, 84.1% complied, and 55.5% were positive. Total colposcopy referral was 4.1%, and for cytology 1%. The detection rate for cervical intraepithelial neoplasia grade 2 or more severe was 10‰, compared with 3.7‰ using cytology. After three years, HPV-positivity was 3.4% (129/3831), overall colposcopy referral was 2.3% (most at one-year follow-up), and detection rate was 0.5/1000. Conclusions The first round detection rate was more than twice that of cytology screening, while colposcopy referral increased fourfold. At the second round, the detection rate decreased dramatically, showing that longer interval and more conservative protocols are needed.

  3. PERANGKAT LUNAK UNTUK SINTESIS SUARA GERAKAN BENDA PADAT

    Directory of Open Access Journals (Sweden)

    Nanik Suciati

    2006-01-01

    Full Text Available Normal 0 false false false IN X-NONE X-NONE MicrosoftInternetExplorer4 /* Style Definitions */ table.MsoNormalTable {mso-style-name:"Table Normal"; mso-tstyle-rowband-size:0; mso-tstyle-colband-size:0; mso-style-noshow:yes; mso-style-priority:99; mso-style-qformat:yes; mso-style-parent:""; mso-padding-alt:0cm 5.4pt 0cm 5.4pt; mso-para-margin:0cm; mso-para-margin-bottom:.0001pt; mso-pagination:widow-orphan; font-size:11.0pt; font-family:"Calibri","sans-serif"; mso-ascii-font-family:Calibri; mso-ascii-theme-font:minor-latin; mso-fareast-font-family:"Times New Roman"; mso-fareast-theme-font:minor-fareast; mso-hansi-font-family:Calibri; mso-hansi-theme-font:minor-latin; mso-bidi-font-family:"Times New Roman"; mso-bidi-theme-font:minor-bidi;} Dalam grafika komputer, telah dikembangkan suatu teknik untuk membuat frame-frame animasi berdasarkan gerakan benda yang dihitung menggunakan rumus-rumus fisika, yang dikenal dengan istilah Physically Based Motion. Pada perkembangan selanjutnya, teknik ini juga dapat digunakan untuk mensintesis suara. Dalam Tugas Akhir ini, akan dibangun suatu aplikasi yang dapat membuat frame-frame animasi gerakan jatuh bebas benda dengan menggunakan teknik Physically Based Motion, sekaligus mensintesis suara yang sesuai dengan gerakan yang dihasilkan. Sistem akan melakukan penghitungan gerakan benda untuk menghasilkan frame-frame animasi. Disamping itu, data suara yang dihasilkan juga digunakan untuk mensintesis suara, sehingga suara yang dihasilkan sesuai dengan gerakan benda. Setelah dilakukan uji coba terhadap aplikasi yang telah dibuat, dapat diambil kesimpulan bahwa gerakan dan suara yang dihasilkan sangat dipengaruhi oleh material properties dan jumlah iterasi yang digunakan untuk melakukan penghitungan. Sedangkan jumlah titik, face dan element dari objek mempengaruhi waktu yang digunakan untuk melakukan penghitungan. Kata kunci: Physically Based Motion, Animasi, Suara Digital, Pemodelan Suara.

  4. Desain Didaktis Penalaran Matematis untuk Mengatasi Kesulitan Belajar Siswa SMP pada Luas dan Volume Limas

    Directory of Open Access Journals (Sweden)

    Sulistiawati Sulistiawati

    2015-12-01

    Full Text Available Penelitian ini dilatarbelakangi oleh rendahnya kemampuan penalaran matematis siswa SMP pada materi geometri. Metode penelitian yang digunakan adalah penelitian desain didaktis (didactial design research.  Penelitian diawali dengan studi pendahuluan untuk mendapatkan data kesulitan belajar (learning obstacle yang dilaksanakan di SMP Negeri 29 Bandung kelas IXE sebanyak 35 orang, SMA Negeri 1 Lembang kelas XI IPA2 sebanyak 41 orang, dan STKIP Siliwangi Bandung mahasiswa semester VI sebanyak 49 orang pada tahun pelajaran 2011/2012 semester genap. Selanjutnya, dikembangkan desain didaktis yang diujicobakan terbatas kepada 30 siswa kelas VIII B SMP Assalam Bandung. Dari uji coba terbatas dilakukan analisis untuk menyusun desain didaktis revisi. Hasil dari penelitian ini diantaranya perangkat pembelajaran yang digunakan pada pembelajaran sebelum menggunakan desain didaktis belum dapat menggali kemampuan penalaran matematis, desain didaktis penalaran matematis yang dikembangkan dapat memperkecil gap yang dihadapi siswa, dan siswa memberikan tanggapan positif terhadap desain didaktis yang dikembangkan.The background of this research was the lack of junior high school students’ mathematical reasoning in geometry. This research used Didactical Design Research (DDR method which started by a preliminary study to 35 students of grade IX E Public Junior High School 29 Bandung, 41 students of grade XI Science Program of Senior High School 1 Lembang, and 49 students of Siliwangi College of Education Bandung in semester VI for academic year 2011/2012. The preliminary study was aimed to explore students’ learning obstacles to develep didactical design. The developed didactical design was implemented to 30 students of grade VII B of Assalam Junior High School Bandung. After this implementation the developed didactical design was revised. The results of this research were the learning tools used by previous teacher have not explored mathematical reasoning yet

  5. p,p'-Dichlorodiphenyltrichloroethane (p,p'-DDT) and p,p'-dichlorodiphenyldichloroethylene (p,p'-DDE) repress prostate specific antigen levels in human prostate cancer cell lines.

    Science.gov (United States)

    Wong, Lilian I L; Labrecque, Mark P; Ibuki, Naokazu; Cox, Michael E; Elliott, John E; Beischlag, Timothy V

    2015-03-25

    Despite stringent restrictions on their use by many countries since the 1970s, the endocrine disrupting chemicals, DDT and DDE are still ubiquitous in the environment. However, little attention has been directed to p,p'-DDT and the anti-androgen, p,p'-DDE on androgen receptor (AR) target gene transcription in human cells. Inhibitors of androgenic activity may have a deleterious clinical outcome in prostate cancer screens and progression, therefore we determined whether environmentally relevant concentrations of p,p'-DDT and p,p'-DDE negatively impact AR-regulated expression of prostate-specific antigen (PSA), and other AR target genes in human LNCaP and VCaP prostate cancer cells. Quantitative real-time PCR and immuno-blotting techniques were used to measure intracellular PSA, PSMA and AR mRNA and protein levels. We have shown for the first time that p,p'-DDT and p,p'-DDE repressed R1881-inducible PSA mRNA and protein levels in a dose-dependent manner. Additionally, we used the fully automated COBAS PSA detection system to determine that extracellular PSA levels were also significantly repressed. These chemicals achieve this by blocking the recruitment of AR to the PSA promoter region at 10 μM, as demonstrated by the chromatin immunoprecipitation (ChIP) in LNCaP cells. Both p,p'-DDT and p,p'-DDE repressed R1881-inducible AR protein accumulation at 10 μM. Thus, we conclude that men who have been exposed to either DDT or DDE may produce a false-negative PSA test when screening for prostate cancer, resulting in an inaccurate clinical diagnosis. More importantly, prolonged exposure to these anti-androgens may mimic androgen ablation therapy in individuals with prostate cancer, thus exacerbating the condition by inadvertently forcing adaptation to this stress early in the disease. Copyright © 2015 Elsevier Ireland Ltd. All rights reserved.

  6. Chlamydia trachomatis infection and sexual behaviour among female students attending higher education in the Republic of Ireland.

    LENUS (Irish Health Repository)

    O'Connell, Emer

    2009-10-29

    BACKGROUND: There are no prevalence data on Chlamydia trachomatis relating to female students attending higher education available for the Republic of Ireland. This information is required to guide on the necessity for Chlamydia screening programmes in higher education settings. This research aimed to determine the prevalence of and predictive risk factors for Chlamydia trachomatis genital infection among female higher education students in Ireland. METHODS: All females presenting during one-day periods at Student Health Units in three higher education institutions in two cities in the Republic of Ireland were invited to participate. Participants completed a questionnaire on lifestyle and socio-demographic factors and provided a urine sample. Samples were tested for C. trachomatis DNA by a PCR based technique (Cobas Amplicor, Roche). To examine possible associations between a positive test and demographic and lifestyle risk factors, a univariate analysis was performed. All associations with a p value < 0.05 were included in a multivariate logistic regression analysis. RESULTS: Of the 460 sexually active participants 22 tested positive (prevalence 4.8%; 95% CI 3.0 to 7.1%). Variables associated with significantly increased risk were current suggestive symptoms, two or more one-night stands and three or more lifetime sexual partners. The students displayed high-risk sexual behaviour. CONCLUSION: The prevalence of C. trachomatis infection and the lack of awareness of the significance of suggestive symptoms among sexually experienced female students demonstrate the need for a programme to test asymptomatic or non-presenting higher education students. The risk factors identified by multivariate analysis may be useful in identifying those who are most likely to benefit from screening. Alcohol abuse, condom use, sexual behaviour (at home and abroad) and, knowledge of sexually transmitted infections (STIs) (including asymptomatic nature or relevant symptoms) were

  7. PENGEMBANGAN ALAT EKSPERIMEN BUNYI DENGAN SISTEM AKUISISI DATA BERBASIS SMARTPHONE ANDROID

    Directory of Open Access Journals (Sweden)

    Ervian Arif Muhafid

    2014-11-01

    Full Text Available Proses pembelajaran di dalam fisika memerlukan eksperimen untuk memperoleh pemahaman yang baik tentang konsep-konsep yang terkandung di dalamnya. Metode eksperimen dimaksudkan juga untuk mempelajari serta mengamati langsung fenomena-fenomena yang terjadi di dalam fisika. Akan tetapi, fakta yang terjadi dalam pembelajaran fisika di kelas khususnya pada sub bab pipa organa belum banyak dilakukan eksperimen dalam pembelajarannya dikarenakan belum tersedianya alat penunjang untuk eksperimen bagi siswa. Tujuan dari penelitian ini yaitu mengembangkan alat eksperimen bunyi pada pipa organa untuk menghitung cepat rambat bunyi di udara dengan sistem akuisisi data dari hasil analisis frekuensi menggunakan smartphone berbasis android dan menentukan akurasi dan presisi hasil pengukuran cepat rambat bunyi di udara pada pipa organa terbuka dan tertutup. Jenis penelitian ini merupakan penelitian pengembangan (Research and Development. Model pengembangan yang digunakan dalam penelitian ini adalah model ADDIE. Pada tahap analisis dilakukan analisis terhadap tujuan matapelajaran fisika dan permasalahan yang ada pada pembelajaran fisika tingkat SMA, pada tahap design dilakukan perancangan alat eksperimen, pada tahap pengembangan dilakukan penyediaan bahan yang akan digunakan dan perakitan, pada tahap implementasi alat eksperimen yang dibuat diuji coba untuk eksperimen, dan pada tahap evaluasi dilakukan pengecekan ulang terhadap kelayakan alat yang sudah dirancang. Hasil data dalam penelitian ini adalah analisis frekuensi dengan software MicTester berbasis android. Teknik analisis data yang digunakan adalah rata-rata berbobot dan regresi linier. Hasil penelitian menunjukkan bahwa alat eksperimen dalam penelitian ini mampu digunakan untuk pembelajaran pipa organa terbuka dan tertutup. Dari eksperimen diperoleh nilai cepat rambat gelombang bunyi di udara untuk pipa organa terbuka adalah v = (340.9 ± 0.3 m/s dengan tingkat akurasinya sebesar 98.1% dan presisinya

  8. CLSI-based transference of the CALIPER database of pediatric reference intervals from Abbott to Beckman, Ortho, Roche and Siemens Clinical Chemistry Assays: direct validation using reference samples from the CALIPER cohort.

    Science.gov (United States)

    Estey, Mathew P; Cohen, Ashley H; Colantonio, David A; Chan, Man Khun; Marvasti, Tina Binesh; Randell, Edward; Delvin, Edgard; Cousineau, Jocelyne; Grey, Vijaylaxmi; Greenway, Donald; Meng, Qing H; Jung, Benjamin; Bhuiyan, Jalaluddin; Seccombe, David; Adeli, Khosrow

    2013-09-01

    The CALIPER program recently established a comprehensive database of age- and sex-stratified pediatric reference intervals for 40 biochemical markers. However, this database was only directly applicable for Abbott ARCHITECT assays. We therefore sought to expand the scope of this database to biochemical assays from other major manufacturers, allowing for a much wider application of the CALIPER database. Based on CLSI C28-A3 and EP9-A2 guidelines, CALIPER reference intervals were transferred (using specific statistical criteria) to assays performed on four other commonly used clinical chemistry platforms including Beckman Coulter DxC800, Ortho Vitros 5600, Roche Cobas 6000, and Siemens Vista 1500. The resulting reference intervals were subjected to a thorough validation using 100 reference specimens (healthy community children and adolescents) from the CALIPER bio-bank, and all testing centers participated in an external quality assessment (EQA) evaluation. In general, the transferred pediatric reference intervals were similar to those established in our previous study. However, assay-specific differences in reference limits were observed for many analytes, and in some instances were considerable. The results of the EQA evaluation generally mimicked the similarities and differences in reference limits among the five manufacturers' assays. In addition, the majority of transferred reference intervals were validated through the analysis of CALIPER reference samples. This study greatly extends the utility of the CALIPER reference interval database which is now directly applicable for assays performed on five major analytical platforms in clinical use, and should permit the worldwide application of CALIPER pediatric reference intervals. Copyright © 2013 The Canadian Society of Clinical Chemists. Published by Elsevier Inc. All rights reserved.

  9. Serum prolactin revisited: parametric reference intervals and cross platform evaluation of polyethylene glycol precipitation-based methods for discrimination between hyperprolactinemia and macroprolactinemia.

    Science.gov (United States)

    Overgaard, Martin; Pedersen, Susanne Møller

    2017-10-26

    Hyperprolactinemia diagnosis and treatment is often compromised by the presence of biologically inactive and clinically irrelevant higher-molecular-weight complexes of prolactin, macroprolactin. The objective of this study was to evaluate the performance of two macroprolactin screening regimes across commonly used automated immunoassay platforms. Parametric total and monomeric gender-specific reference intervals were determined for six immunoassay methods using female (n=96) and male sera (n=127) from healthy donors. The reference intervals were validated using 27 hyperprolactinemic and macroprolactinemic sera, whose presence of monomeric and macroforms of prolactin were determined using gel filtration chromatography (GFC). Normative data for six prolactin assays included the range of values (2.5th-97.5th percentiles). Validation sera (hyperprolactinemic and macroprolactinemic; n=27) showed higher discordant classification [mean=2.8; 95% confidence interval (CI) 1.2-4.4] for the monomer reference interval method compared to the post-polyethylene glycol (PEG) recovery cutoff method (mean=1.8; 95% CI 0.8-2.8). The two monomer/macroprolactin discrimination methods did not differ significantly (p=0.089). Among macroprolactinemic sera evaluated by both discrimination methods, the Cobas and Architect/Kryptor prolactin assays showed the lowest and the highest number of misclassifications, respectively. Current automated immunoassays for prolactin testing require macroprolactin screening methods based on PEG precipitation in order to discriminate truly from falsely elevated serum prolactin. While the recovery cutoff and monomeric reference interval macroprolactin screening methods demonstrate similar discriminative ability, the latter method also provides the clinician with an easy interpretable monomeric prolactin concentration along with a monomeric reference interval.

  10. Verification of an immunoturbidimetric assay for heart-type fatty acid-binding protein (H-FABP) on a clinical chemistry platform and establishment of the upper reference limit.

    Science.gov (United States)

    Da Molin, Simona; Cappellini, Fabrizio; Falbo, Rosanna; Signorini, Stefano; Brambilla, Paolo

    2014-11-01

    Heart-type fatty acid-binding protein (H-FABP) is an early biomarker of cardiac injury. Randox Laboratories developed an immunoturbidimetric H-FABP assay for non-proprietary automated clinical chemistry analysers that could be useful in the emergency department. We verified the analytical performances claimed by Randox Laboratories on Roche Cobas 6000 clinical chemistry platform in use in our laboratory, and we defined our own 99th percentile upper reference limit for H-FABP. For the verification of method performances, we used pools of spared patient samples from routine and two levels of quality control material, while samples for the reference value study were collected from 545 blood donors. Following CLSI guidelines we verified limit of blank (LOB), limit of detection (LOD), limit of quantitation (LOQ), repeatability and within-laboratory precision, trueness, linearity, and the stability of H-FABP in EDTA over 24h. The LOQ (3.19 μg/L) was verified with a CV% of 10.4. The precision was verified for the low (mean 5.88 μg/L, CV=6.7%), the medium (mean 45.28 μg/L, CV=3.0%), and the high concentration (mean 88.81 μg/L, CV=4.0%). The trueness was verified as well as the linearity over the indicated measurement interval of 0.747-120 μg/L. The H-FABP in EDTA samples is stable throughout 24h both at room temperature and at 4 °C. The H-FABP 99th percentile upper reference limit for all subjects (3.60 μg/L, 95% CI 3.51-3.77) is more appropriate than gender-specific ones that are not statistically different. Copyright © 2014 The Canadian Society of Clinical Chemists. Published by Elsevier Inc. All rights reserved.

  11. Degradasi Zat Warna Pada Limbah Cair Industri Tekstil Dengan Metode Fotokatalitik Menggunakan Nanokomposit Tio2 – Zeolit

    Directory of Open Access Journals (Sweden)

    Siti Naimah

    2014-10-01

    Full Text Available Telah dilakukan penelitian degradasi zat warna pada limbah cair industri tekstil menggunakan metode fotokatalitik dengan penambahan nanokomposit TiO2 - zeolit. Tujuan penelitian ini untuk mengetahui efektifitas kemampuan nanokomposit dalam mendegradasi zat warna serta parameter-parameter yang ditetapkan dalam Peraturan Pemerintah Nomor 82 Tahun 2001 tentang pengelolaan kualitas air dan pengendalian pencemaran air. Zeolit alam diaktivasi terlebih dahulu sebelum dikompositkan dengan TiO2. Perbandingan TiO2 : zeolit yang digunakan pada pembuatan nanokomposit adalah 100:0, 20:80, 40:60, 50:50, 60:40, dan 0:100. Percobaan pendahuluan dilakukan dengan menggunakan limbah cair tekstil buatan yang dibuat dari pewarna Synolon yellow S- G6LS (untuk warna kuning dan B/Blue R 150% special (untuk warna biru, sedangkan limbah cair industri tekstil diambil dari salah satu industri di Bogor. Waktu degradasi zat warna dilakukan dalam reaktor fotokatalitik selama 180 menit. Pada perbandingan TiO2 : zeolit 40:60 didapatkan degradasi zat warna tekstil buatan berwarna kuning maksimal adalah 99,9 % dan zat warna tekstil buatan berwarna biru maksimal 99,8%. Analisis warna menggunakan spektrofotometer dan HPLC. Nanokomposit TiO2 : zeolit 40 : 60 merupakan perbandingan optimal sehingga digunakan pada uji coba limbah cair industri tekstil. Degradasi maksimal warna kuning dengan pengolahan fotokatalitik yang ditambahkan nanokomposit pada limbah cair industri tekstil sebesar 98,4%, sedangkan untuk parameter uji zat organik, TSS, TDS, BOD, COD, dan lemak/minyak diperoleh nilai di bawah baku mutu yang dipersyaratkan. 

  12. RAS screening in colorectal cancer: a comprehensive analysis of the results from the UK NEQAS colorectal cancer external quality assurance schemes (2009-2016).

    Science.gov (United States)

    Richman, Susan D; Fairley, Jennifer; Butler, Rachel; Deans, Zandra C

    2017-12-01

    Evidence strongly indicates that extended RAS testing should be undertaken in mCRC patients, prior to prescribing anti-EGFR therapies. With more laboratories implementing testing, the requirement for External Quality Assurance schemes increases, thus ensuring high standards of molecular analysis. Data was analysed from 15 United Kingdom National External Quality Assessment Service (UK NEQAS) for Molecular Genetics Colorectal cancer external quality assurance (EQA) schemes, delivered between 2009 and 2016. Laboratories were provided annually with nine colorectal tumour samples for genotyping. Information on methodology and extent of testing coverage was requested, and scores given for genotyping, interpretation and clerical accuracy. There has been a sixfold increase in laboratory participation (18 in 2009 to 108 in 2016). For RAS genotyping, fewer laboratories now use Roche cobas®, pyrosequencing and Sanger sequencing, with more moving to next generation sequencing (NGS). NGS is the most commonly employed technology for BRAF and PIK3CA mutation screening. KRAS genotyping errors were seen in ≤10% laboratories, until the 2014-2015 scheme, when there was an increase to 16.7%, corresponding to a large increase in scheme participants. NRAS genotyping errors peaked at 25.6% in the first 2015-2016 scheme but subsequently dropped to below 5%. Interpretation and clerical accuracy scores have been consistently good throughout. Within this EQA scheme, we have observed that the quality of molecular analysis for colorectal cancer has continued to improve, despite changes in the required targets, the volume of testing and the technologies employed. It is reassuring to know that laboratories clearly recognise the importance of participating in EQA schemes.

  13. Influence of centrifugation conditions on the results of 77 routine clinical chemistry analytes using standard vacuum blood collection tubes and the new BD-Barricor tubes.

    Science.gov (United States)

    Cadamuro, Janne; Mrazek, Cornelia; Leichtle, Alexander B; Kipman, Ulrike; Felder, Thomas K; Wiedemann, Helmut; Oberkofler, Hannes; Fiedler, Georg M; Haschke-Becher, Elisabeth

    2018-02-15

    Although centrifugation is performed in almost every blood sample, recommendations on duration and g-force are heterogeneous and mostly based on expert opinions. In order to unify this step in a fully automated laboratory, we aimed to evaluate different centrifugation settings and their influence on the results of routine clinical chemistry analytes. We collected blood from 41 healthy volunteers into BD Vacutainer PST II-heparin-gel- (LiHepGel), BD Vacutainer SST II-serum-, and BD Vacutainer Barricor heparin-tubes with a mechanical separator (LiHepBar). Tubes were centrifuged at 2000xg for 10 minutes and 3000xg for 7 and 5 minutes, respectively. Subsequently 60 and 21 clinical chemistry analytes were measured in plasma and serum samples, respectively, using a Roche COBAS instrument. High sensitive Troponin T, pregnancy-associated plasma protein A, ß human chorionic gonadotropin and rheumatoid factor had to be excluded from statistical evaluation as many of the respective results were below the measuring range. Except of free haemoglobin (fHb) measurements, no analyte result was altered by the use of shorter centrifugation times at higher g-forces. Comparing LiHepBar to LiHepGel tubes at different centrifugation setting, we found higher lactate-dehydrogenase (LD) (P = 0.003 to centrifuged at higher speed (3000xg) for a shorter amount of time (5 minutes) without alteration of the analytes tested in this study. When using LiHepBar tubes for blood collection, a separate LD reference value might be needed.

  14. Effects of two types of medical contrast media on routine chemistry results by three automated chemistry analyzers.

    Science.gov (United States)

    Park, Yu Jin; Rim, John Hoon; Yim, Jisook; Lee, Sang-Guk; Kim, Jeong-Ho

    2017-08-01

    The use of iodinated contrast media has grown in popularity in the past two decades, but relatively little attention has been paid to the possible interferential effects of contrast media on laboratory test results. Herein, we investigate medical contrast media interference with routine chemistry results obtained by three automated chemistry analyzers. Ten levels of pooled serum were used in the study. Two types of medical contrast media [Iopamiro (iopamidol) and Omnipaque (iohexol)] were evaluated. To evaluate the dose-dependent effects of the contrast media, iopamidol and iohexol were spiked separately into aliquots of serum for final concentrations of 1.8%, 3.6%, 5.5%, 7.3%, and 9.1%. The 28 analytes included in the routine chemistry panel were measured by using Hitachi 7600, AU5800, and Cobas c702 analyzers. We calculated the delta percentage difference (DPD) between the samples and the control, and examined dose-dependent trends. When the mean DPD values were compared with the reference cut-off criteria, the only uniformly interferential effect observed for all analyzers was in total protein with iopamidol. Two additional analytes that showed trends toward interferential effects only in few analyzers and exceeded the limits of the allowable error were the serum iron and the total CO 2 . The other combinations of analyzer and contrast showed no consistent dose-dependent propensity for change in any analyte level. Our study suggests that many of the analytes included in routine chemistry results, except total protein and serum iron, are not significantly affected by iopamidol and iohexol. These results suggest that it would be beneficial to apply a flexible medical evaluation process for patients requiring both laboratory tests and imaging studies, minimizing the need for strict regulations for sequential tests. Copyright © 2017 The Canadian Society of Clinical Chemists. Published by Elsevier Inc. All rights reserved.

  15. Influence of a prolonged fasting and mild activity on routine laboratory tests.

    Science.gov (United States)

    Šupak-Smolčić, Vesna; Antončić, Dragana; Ožanić, Doris; Vladilo, Ivana; Bilić-Zulle, Lidija

    2015-01-01

    Despite the standardization of the phlebotomy procedure, blood analysis is occasionally requested after recommended hours with the excuse that the patient is still fasting. We aimed to examine the influence of prolonged fasting and mild physical activity on routine laboratory tests. The study was conducted on 30 volunteers (27 female) median age 40y (20-59). Blood samples were taken in the morning (7:00-8:00a.m.) and early afternoon (1:00-2:00p.m.) after prolonged fasting and usual daily activities. Serum glucose (GLU), urea, creatinine, triglyceride, uric acid (UA), iron and electrolytes were analyzed on Roche cobas 6000 c501 and complete blood count on Siemens ADVIA 2120i. Statistical significance between the two measurements was tested using paired t-test or Wilcoxon test according to data distribution. Clinical significance was judged against calculated reference change values (RCV). A statistically significant decrease was found for red blood cell count, hemoglobin, hematocrit, mean corpuscular volume (MCV), GLU, urea, creatinine, triglycerides and electrolytes, whereas white blood cell count and iron were significantly increased. Judging against desirable bias derived from biological variation, a significant change was found for all the analytes except MCV, platelet count, UA and triglycerides. A clinically significant change was not found for any of the tested analytes when compared to RCV. Prolonged fasting and mild activity will not influence the medical decision for healthy subjects with normal results. Despite the present statistically significant change, the clinically significant change was not shown. However, the study did not include pathological results which have to be interpreted more carefully. Copyright © 2014 The Canadian Society of Clinical Chemists. Published by Elsevier Inc. All rights reserved.

  16. Does laboratory automation for the preanalytical phase improve data quality?

    Science.gov (United States)

    Lima-Oliveira, Gabriel; Lippi, Giuseppe; Salvagno, Gian Luca; Danese, Elisa; Montagnana, Martina; Brocco, Giorgio; Voi, Monica; Picheth, Geraldo; Guidi, Gian Cesare

    2013-10-01

    Our aim was to evaluate whether automation for the preanalytical phase improves data quality. Blood from 100 volunteers was collected into two vacuum tubes. One sample from each volunteer was respectively assigned to (G1) traditional processing, starting with centrifugation at 1200 g for 10 min, and (G2) the MODULAR PRE-ANALYTICALS EVO-MPA system. The routine clinical chemistry tests were performed in duplicate on the same instrument Cobas 6000 module. G1 samples were uncapped manually and immediately placed into the instrument. G2 samples were directly fed from the MPA system to the instrument without further staff intervention. At the end, (1) the G1 samples were stored for 6 h at 4 °C as prescribed in our accredited laboratory and (2) the G2 samples were stored for 6 h in the MPA output buffer. Results from G1 and G2, before and after storage, were compared. Significant increases were observed in G1 compared with G2 samples as follows: (1) before storage for alkaline phosphatase (ALP), lactate dehydrogenase (LDH), phosphate (P), magnesium (MG), iron (FE), and hemolysis index and (2) after storage for total cholesterol (COL), triglycerides (TG), total protein (TP), albumin (ALB), blood urea nitrogen (BUN), creatinine (CRE), uric acid (UA), ALP, pancreatic amylase, aspartate aminotransferase (AST), alanine aminotransferase (ALT), g-glutamyltransferase (GGT), LDH, creatine kinase (CK), calcium (CA), FE, sodium (NA), potassium (K), and hemolysis index. Moreover, significant increases were observed in (3) G1-after versus G1-before storage samples for COL, high-density lipoprotein cholesterol, TG, TP, ALB, BUN, CRE, UA, AST, ALT, GGT, LDH, P, CA, MG, FE, NA, K, and hemolysis index and (4) G2-after versus G2-before storage only for BUN, AST, LDH, P, and CA. In conclusion, our results show that the MPA system improves the quality of laboratory testing.

  17. PENGEMBANGAN BOOKLET KAWASAN RUMAH PANGAN LESTARI (KRPL UNTUK SANTRI EKOPESANTREN LOMBOK TENGAH

    Directory of Open Access Journals (Sweden)

    Najah Sholehah

    2017-08-01

    Full Text Available This research was aimed to result of Sustainable Reserve Food Garden Program (SRFGP booklet learning media for ecopesantren students are (1 arrange SRFGP booklet for senior high school students in boading house, (2 to test feasibility of SRFGP booklet trough test the validity by material expert, media expert, and environment practitioner, (3 to test practically of SRFGP booklet trough students responses. Research method is  consists of  developmental research a model of ADDIE that have 5 phases are Analyze, Design, Develop, Implement, and Evaluate. The result showed that material validation from material expert reaches 67.04% to the category of very valid. Validation results of media expert are 93.30% to the category of very valid. Environment practitioner validated it results 88.33% to the category of very valid, students responses to the booklet in small group trials results 98.82% to the category of very valid. The conclusion of this research SRFGP booklet is feasible and practice to implement for learning media for ecopesantren students in central Lombok. Penelitian ini bertujuan untuk menghasilkan media pembelajaran booklet program Kawasan Rumah Pangan Lestari untuk santri ekopesantren, yaitu (1 menyusun booklet KRPL untuk santri MA Pondok Pesantren, (2 menguji kelayakan booklet KRPL melalui uji validasi oleh ahli materi, ahli media, dan praktisi lingkungan,  dan (3 menguji kepraktisan booklet KRPL melalui uji coba pendahuluan oleh santri. Metode penelitian ini ialah penelitian pengembangan dengan menggunakan model ADDIE (Analyze, Design, Develop, Implement, dan Evaluate. Hasil penelitian menunjukkan bahwa pengembangan booklet dari ahli media sebesar 93,3% dengan kategori sangat valid, ahli materi sebesar 67% dengan kategori cukup valid, dan ahli praktisi lingkungan sebesar 88,3% dengan kategori sangat valid, dan uji pendahuluan sebesar 98,9% dengan kategori sangat valid. Kesimpulan dari penelitian ini ialah booklet KRPL sangat layak dan

  18. Evaluation of the Ortho-Clinical Diagnostics Vitros ECi Anti-HCV test: comparison with three other methods.

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    Watterson, Jeannette M; Stallcup, Paulina; Escamilla, David; Chernay, Patrick; Reyes, Alfred; Trevino, Sylvia C

    2007-01-01

    After observing a high incidence of low positive hepatitis C virus (HCV) antibody screens by the Ortho-Clinical Vitros ECi test (Orthoclinical Diagnostics, Raritan, NJ), we compared results against those obtained using another chemiluminescent analyzer, as well as two U.S. Food and Drug Administration (FDA)-approved confirmatory methodologies. To ascertain the true anti-HCV status of samples deemed low-positive by the Ortho-Clinical Vitros ECi test, we tested samples using the ADVIA Centaur HCV screen test (Siemens Medical Solutions Diagnostics), the Chiron recombinant immunoblot assay (RIBA) test (Chiron Corp., Emeryville, CA), and the Roche COBAS Amplicor HCV qualitative test (Roche Diagnostics, Indianapolis, IN) in a series of studies. Of 94 specimens positive by Vitros ECi, 19% were observed to be negative by Centaur. A separate study of 91 samples with signal-to-cutoff (s/co) values less than 8.0 showed that all but one was negative for HCV ribonucleic acid (RNA). In comparison with RIBA, 100% (77) samples positive by the Vitros ECi test with s/co values less than 12.0 were negative or indeterminate by RIBA. A final study comparing all four methods side-by-side showed 63% disagreement by Centaur for Vitros ECi low-positive samples, 75% disagreement by RIBA, and 97% disagreement by polymerase chain reaction (PCR). In conclusion, the Ortho-Clinical Vitros ECi Anti-HCV test yields a high rate of false-positive results in the low s/co range in our patient population. (c) 2007 Wiley-Liss, Inc.

  19. Analysis of PIK3CA Mutations and Activation Pathways in Triple Negative Breast Cancer.

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    Paolo Cossu-Rocca

    Full Text Available Triple Negative Breast Cancer (TNBC accounts for 12-24% of all breast carcinomas, and shows worse prognosis compared to other breast cancer subtypes. Molecular studies demonstrated that TNBCs are a heterogeneous group of tumors with different clinical and pathologic features, prognosis, genetic-molecular alterations and treatment responsivity. The PI3K/AKT is a major pathway involved in the regulation of cell survival and proliferation, and is the most frequently altered pathway in breast cancer, apparently with different biologic impact on specific cancer subtypes. The most common genetic abnormality is represented by PIK3CA gene activating mutations, with an overall frequency of 20-40%. The aims of our study were to investigate PIK3CA gene mutations on a large series of TNBC, to perform a wider analysis on genetic alterations involving PI3K/AKT and BRAF/RAS/MAPK pathways and to correlate the results with clinical-pathologic data.PIK3CA mutation analysis was performed by using cobas® PIK3CA Mutation Test. EGFR, AKT1, BRAF, and KRAS genes were analyzed by sequencing. Immunohistochemistry was carried out to identify PTEN loss and to investigate for PI3K/AKT pathways components.PIK3CA mutations were detected in 23.7% of TNBC, whereas no mutations were identified in EGFR, AKT1, BRAF, and KRAS genes. Moreover, we observed PTEN loss in 11.3% of tumors. Deregulation of PI3K/AKT pathways was revealed by consistent activation of pAKT and p-p44/42 MAPK in all PIK3CA mutated TNBC.Our data shows that PIK3CA mutations and PI3K/AKT pathway activation are common events in TNBC. A deeper investigation on specific TNBC genomic abnormalities might be helpful in order to select patients who would benefit from current targeted therapy strategies.

  20. Analysis of PIK3CA Mutations and Activation Pathways in Triple Negative Breast Cancer.

    Science.gov (United States)

    Cossu-Rocca, Paolo; Orrù, Sandra; Muroni, Maria Rosaria; Sanges, Francesca; Sotgiu, Giovanni; Ena, Sara; Pira, Giovanna; Murgia, Luciano; Manca, Alessandra; Uras, Maria Gabriela; Sarobba, Maria Giuseppina; Urru, Silvana; De Miglio, Maria Rosaria

    2015-01-01

    Triple Negative Breast Cancer (TNBC) accounts for 12-24% of all breast carcinomas, and shows worse prognosis compared to other breast cancer subtypes. Molecular studies demonstrated that TNBCs are a heterogeneous group of tumors with different clinical and pathologic features, prognosis, genetic-molecular alterations and treatment responsivity. The PI3K/AKT is a major pathway involved in the regulation of cell survival and proliferation, and is the most frequently altered pathway in breast cancer, apparently with different biologic impact on specific cancer subtypes. The most common genetic abnormality is represented by PIK3CA gene activating mutations, with an overall frequency of 20-40%. The aims of our study were to investigate PIK3CA gene mutations on a large series of TNBC, to perform a wider analysis on genetic alterations involving PI3K/AKT and BRAF/RAS/MAPK pathways and to correlate the results with clinical-pathologic data. PIK3CA mutation analysis was performed by using cobas® PIK3CA Mutation Test. EGFR, AKT1, BRAF, and KRAS genes were analyzed by sequencing. Immunohistochemistry was carried out to identify PTEN loss and to investigate for PI3K/AKT pathways components. PIK3CA mutations were detected in 23.7% of TNBC, whereas no mutations were identified in EGFR, AKT1, BRAF, and KRAS genes. Moreover, we observed PTEN loss in 11.3% of tumors. Deregulation of PI3K/AKT pathways was revealed by consistent activation of pAKT and p-p44/42 MAPK in all PIK3CA mutated TNBC. Our data shows that PIK3CA mutations and PI3K/AKT pathway activation are common events in TNBC. A deeper investigation on specific TNBC genomic abnormalities might be helpful in order to select patients who would benefit from current targeted therapy strategies.

  1. Diagnosis and follow-up of genital chlamydial infection by direct methods and by detection of serum IgG, IgA and secretory IgA

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    Fresse A

    2010-01-01

    Full Text Available Purpose: To determine the prevalence of Chlamydia trachomatis infection in a high-risk population by direct and indirect methods and to evaluate the diagnosis of secretory immunoglobulin A (sIgA. Patients and Methods: Urethral or endocervical specimens from 78 patients (48 females and 30 males were examined by cell culture, direct fluorescence assay, PCR Cobas Amplicor (Roche Molecular Diagnostics, and sIgA was detected by the recombinant lipopolysaccharide (LPS-enzyme-linked immunoassay (rELISA. Serum from each patient was also obtained and analysed for the presence of IgG and IgA antibody by in-house microimmunofluorescence (MIF and by the rELISA method (Medac, Hamburg, Germany. Results: The overall C. trachomatis prevalence determined by direct methods was 28%. The detection of sIgA antibodies was significantly higher in the group of patients with a positive direct detection (50% than in the group of negative direct detection (10.7%. The Chlamydia-specific IgA antibodies were detected by the rELISA in 40.9 and 53.6% of group I (positive direct detection and group II patients (negative direct detection, respectively. The species-specific IgA antibodies were detected by the MIF method in 18.2 and 16.1% of group I and II patients, respectively. Chlamydia genus-specific IgG antibodies were detected by the rELISA in 86.4 and 83.9% of group I and group II patients and, C. trachomatis specific IgG were present in 81.8 and 73.2% of group I and group II patients, respectively, as assessed by the MIF test. Conclusion: Combining the positive direct methods and/or positive sIgA antibody results from cervical or urethral specimens had an indication of current C. trachomatis infection.

  2. Nucleic acid amplification test for detection of west nile virus infection in pakistani blood donors

    International Nuclear Information System (INIS)

    Niazi, S.K.; Alam, M.

    2017-01-01

    Background: The study was planned to determine the presence of West Nile Virus (WNV) infection in Pakistani blood donors, using Nucleic Acid Amplification Test (NAT). Methods: The blood donors for study were selected on the basis of the standard questionnaire and routine screening results. Six donors were pooled using an automated pipettor and NAT for WNV was performed on Roche Cobas s 201 NAT system. The reactive pools were resolved in Individual Donation-NAT (ID-NAT) format and a sample from FFP bags of reactive donations was retrieved. NAT was again performed on retrieved plasma bag (RPB) sample to confirm the reactive donations. The donors were also recalled and interviewed about history of illness related to recent WNV infection. Results: After serological screening of 1929 donors during the study period, 1860 donors were selected for NAT test for WNV detection. The mean age of the donors was 28±8.77 (range: 18–57 years). 1847 (99.3%) donors were male and 13 (0.7%) were female. NAT for WNV identified six initially reactive pools (0.32%). On follow-up testing with RPB samples, 4 donors (0.21%) were found confirmed reactive for WNV RNA (NAT yield of 1 in 465 blood donors). Conclusion: WNV is a threat to safety of blood products in Pakistan. A screening strategy can be implemented after a large-scale study and financial considerations. One of the reduced cost screening strategies is seasonal screening of blood donors for WNV, with pooling of samples. (author)

  3. Therapy of chronic hepatitis C: Virologic response monitoring

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    Kuljić-Kapulica Nada

    2010-01-01

    Full Text Available Background/Aim. Virological testing is considered to be essential in the management of hepatitis C virus (HCV infection in order to diagnose infection, and, most importantly, as a quide for treatment decisions and assess the virological response to antiviral therapy. The aim of this study was to determine the rate of a sustained virological response (SVR and various factors associated with response rates in chronic hepatitis C infected patients treated with pegiinterferon alpha (PEGINF and ribavirin (RBV combination therapy. Methods. A total of 34 patients, treated with PEG-IFN and RBV were studied. Serum HCV-RNA was measured before the treatment, 12 weeks following the start of the therapy and 6 weeks after the treatment cessation. SVR was defined as undetectable serum HCV-RNA 6 months of post-treatment follow-up, virologic relapse (VR as relapse of HCV-RNA during the post-treatment follow-up. Serum HCV-RNA was measured with the Cobas Amplicor test. Results. At the end of post-treatment follow-up 19 (55.8% patients demonstrated a SVR. The majority of the patients were genotype 1 (27, and the other were genotype 3 (5 patients and genotype 4 (2 patients. There was VR in 6 patients 6 months after the therapy. In 9 patients HCV-RNA was positive after 12 weeks. Conclusion. We demonstrated that patients with chronic HCV infection can be successfully treated with combination of PEG-INF and RBV. This result emphasizes also that post-treatment follow-up to identify patients with SVR or VR could be important.

  4. Comparative evaluation of three automated systems for DNA extraction in conjunction with three commercially available real-time PCR assays for quantitation of plasma Cytomegalovirus DNAemia in allogeneic stem cell transplant recipients.

    Science.gov (United States)

    Bravo, Dayana; Clari, María Ángeles; Costa, Elisa; Muñoz-Cobo, Beatriz; Solano, Carlos; José Remigia, María; Navarro, David

    2011-08-01

    Limited data are available on the performance of different automated extraction platforms and commercially available quantitative real-time PCR (QRT-PCR) methods for the quantitation of cytomegalovirus (CMV) DNA in plasma. We compared the performance characteristics of the Abbott mSample preparation system DNA kit on the m24 SP instrument (Abbott), the High Pure viral nucleic acid kit on the COBAS AmpliPrep system (Roche), and the EZ1 Virus 2.0 kit on the BioRobot EZ1 extraction platform (Qiagen) coupled with the Abbott CMV PCR kit, the LightCycler CMV Quant kit (Roche), and the Q-CMV complete kit (Nanogen), for both plasma specimens from allogeneic stem cell transplant (Allo-SCT) recipients (n = 42) and the OptiQuant CMV DNA panel (AcroMetrix). The EZ1 system displayed the highest extraction efficiency over a wide range of CMV plasma DNA loads, followed by the m24 and the AmpliPrep methods. The Nanogen PCR assay yielded higher mean CMV plasma DNA values than the Abbott and the Roche PCR assays, regardless of the platform used for DNA extraction. Overall, the effects of the extraction method and the QRT-PCR used on CMV plasma DNA load measurements were less pronounced for specimens with high CMV DNA content (>10,000 copies/ml). The performance characteristics of the extraction methods and QRT-PCR assays evaluated herein for clinical samples were extensible at cell-based standards from AcroMetrix. In conclusion, different automated systems are not equally efficient for CMV DNA extraction from plasma specimens, and the plasma CMV DNA loads measured by commercially available QRT-PCRs can differ significantly. The above findings should be taken into consideration for the establishment of cutoff values for the initiation or cessation of preemptive antiviral therapies and for the interpretation of data from clinical studies in the Allo-SCT setting.

  5. Effects of different centrifugation conditions on clinical chemistry and Immunology test results.

    Science.gov (United States)

    Minder, Elisabeth I; Schibli, Adrian; Mahrer, Dagmar; Nesic, Predrag; Plüer, Kathrin

    2011-05-10

    The effect of centrifugation time of heparinized blood samples on clinical chemistry and immunology results has rarely been studied. WHO guideline proposed a 15 min centrifugation time without citing any scientific publications. The centrifugation time has a considerable impact on the turn-around-time. We investigated 74 parameters in samples from 44 patients on a Roche Cobas 6000 system, to see whether there was a statistical significant difference in the test results among specimens centrifuged at 2180 g for 15 min, at 2180 g for 10 min or at 1870 g for 7 min, respectively. Two tubes with different plasma separators (both Greiner Bio-One) were used for each centrifugation condition. Statistical comparisons were made by Deming fit. Tubes with different separators showed identical results in all parameters. Likewise, excellent correlations were found among tubes to which different centrifugation conditions were applied. Fifty percent of the slopes lay between 0.99 and 1.01. Only 3.6 percent of the statistical tests results fell outside the significance level of p < 0.05, which was less than the expected 5%. This suggests that the outliers are the result of random variation and the large number of statistical tests performed. Further, we found that our data are sufficient not to miss a biased test (beta error) with a probability of 0.10 to 0.05 in most parameters. A centrifugation time of either 7 or 10 min provided identical test results compared to the time of 15 min as proposed by WHO under the conditions used in our study.

  6. Short-term effects of replacing milk with cola beverages on insulin-like growth factor-I and insulin-glucose metabolism: a 10 d interventional study in young men.

    Science.gov (United States)

    Hoppe, Camilla; Kristensen, Mette; Boiesen, Marlene; Kudsk, Jane; Fleischer Michaelsen, Kim; Mølgaard, Christian

    2009-10-01

    In the Western world, a trend towards increased consumption of carbonated soft drinks combined with a decreasing intake of milk is observed. This may affect circulating insulin-like growth factor I (IGF-I) and fasting insulin, as seen in pre-pubertal children. The present study was designed to reflect the trend of replacing milk with carbonated beverages in young men and to study the effects of this replacement on IGF-I, IGF-binding protein 3 (IGFBP-3), IGF-I:IGFBP-3 and glucose-insulin metabolism. A randomised, controlled crossover intervention study, in which eleven men aged 22-29 years were given a low-Ca diet in two 10 d periods with 10 d washout in between. In one period, they drank 2.5 litres of Coca Cola(R) per day and the other period 2.5 litres of semi-skimmed milk. Serum IGF-I, IGFBP-3 (RIA), insulin (fluoro immunoassay) and glucose (Cobas) were determined at baseline and end point of each intervention period. Insulin resistance and beta-cell function were calculated with the homeostasis model assessment. A decrease in serum IGF-I was observed in the cola period compared with the milk period (P cola over a 10 d period decreases total IGF-I compared with a high intake of milk, with no effect on glucose-insulin metabolism in adult men. It is unknown whether this is a transient phenomenon or whether it has long-term consequences.

  7. Associated liver enzymes with hyperlipidemic profile in type 2 diabetes patients.

    Science.gov (United States)

    Al-Jameil, Noura; Khan, Farah A; Arjumand, Sadia; Khan, Mohammad F; Tabassum, Hajera

    2014-01-01

    Type 2 diabetes mellitus (T2DM) is characterized by hyperglycemia and is associated with dyslipidemia and disturbed liver function. Aim of the present work is to assess the liver enzymes and to find its association with hyperlipidemic profile in T2DM. Total of 157 subjects were studied and divided into two groups; diabetes (n=81) and non-diabetes (n=76). Various biochemical parameters like fasting glucose, post prandial glucose, HbA1c, total cholesterol (TC), triglycerides (Tg), high density lipoprotein cholesterol (HDL-C), alanine amino transferase (ALT), aspartate amino transferase (AST) and gamma-glutamyl transferase (GGT) were analyzed by ROCHE module Cobas 6000 (C501 & C601) analyzer, kits were procured by ROCHE diagnostics. Low density lipoprotein cholesterol (LDL-C) was estimated by Freidwald's formula. Statistical analysis was performed by applying student t test and Pearson's correlation coefficient, at 0.0001 and 0.05 level of significance, respectively. All the glycemic control parameters, lipid profile parameters except HDL-C and liver enzymes were found increased in diabetes group and significantly differ from non-diabetes group (p>0.0001). ALT showed significant positive correlation with fasting glucose, post prandial glucose, HbA1c, TC, Tg, LDL-C and GGT at p>0.05. AST showed very weak relation with all parameters while GGT was positively associated with fasting glucose, post prandial glucose, HbA1c, TC, Tg, LDL-C and ALT at p>0.05. In conclusion, T2DM incline to elevate liver enzymes, especially ALT and GGT were of significance. Routine screening of ALT and GGT in T2DM patients may assists early detection of liver abnormalities and to arrest the progress of disease.

  8. Aplikasi Multichart Diagram Dalam Desain Dan Manufaktur Tungku Pengecoran Kuningan (CuZn5 Menggunakan Bahan Bakar Briket Batubara Kalori Rendah

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    Diah Kusuma Pratiwi

    2015-07-01

    Full Text Available Abstrak : Sejak semakin mahalnya harga miyak bumi, sebagian besar industri kecil pengecoran logam tidakdapat bertahan karena biaya produksi yang semakin tinggi. Oleh karena itu dicari bahan bakaralternatif yang dapat menggantikan minyak dan gas dengan aman dan murah. Indonesia kayaakan batubara yang dalam pasar domestik dijual dalam bentuk briket batubara kalori rendah,oleh karena itu dilakukan desain untuk membuat tungku dengan bahan bakar ini. Proses desaindilakukan dengan mulai menghitung kalor yang dibutuhkan untuk melebur lagam, dalam hal inilogam yang akan dilebur adalah kuningan (CuZn5. Selanjutnya dilakukan pemilihan materialrefraktori untuk tungku yang dapat meminimalisir heat loss. Desain tungku pengecoran inidilakukan dengan menggunakan Multichart Diagram untuk effisiensi 40 % dan kapasitas 150 kgkuningan. Hasil Uji coba pengecoran dilapangan ternyata effisiensi tungku adalah 42%, lamapeleburan 3,5 jam.Kata kunci: Tungku pengecoran kuningan, briket batubara kalori rendah, mulichart diagram Abstract : Since the increasingly price of oil fuel, mostly small foundry industry can not survive due to thehigher production costs. Therefore searching for alternative fuels that can replace oil and gas safelyand inexpensively is promoted. Indonesia is rich in coal. In domestic market is sold in the form oflow-grade coal briquettes, therefore, is carried out the design to make furnace from this fuel. Thedesign process is done by beginning to calculate the heat needed to melt this alloy, in this case themetal to be melted is brass (CuZn5. Furthermore, the material selection for refractory furnace tominimize heat loss. This casting is done by using Multichart Diagram for 40% efficiency andcapacity of 150 kg brass. The test results during experiment obtained that efficiency is 42% in 3.5hours.Keywords: Furnace casting brass, low grade coal briquettes, multichart diagram

  9. Detection of toxoplasma-specific immunoglobulin G in human sera: performance comparison of in house Dot-ELISA with ECLIA and ELISA.

    Science.gov (United States)

    Teimouri, Aref; Modarressi, Mohammad Hossein; Shojaee, Saeedeh; Mohebali, Mehdi; Zouei, Nima; Rezaian, Mostafa; Keshavarz, Hossein

    2018-05-08

    In the current study, performance of electrochemiluminescence immunoassay (ECLIA) in detection of anti-toxoplasma IgG in human sera was compared with that of enzyme-linked immunosorbent assay (ELISA). Furthermore, performance of an in house Dot-ELISA in detection of anti-toxoplasma IgG was compared with that of ECLIA and ELISA. In total, 219 human sera were tested to detect anti-toxoplasma IgG using Dynex DS2® and Roche Cobas® e411 Automated Analyzers. Discordant results rechecked using immunofluorescence assay (IFA). Then, sera were used in an in house Dot-ELISA to assess toxoplasma-specific IgG. Of the 219 samples, two samples were found undetermined using ECLIA but reactive using ELISA. Using IFA, the two sera were reported unreactive. Furthermore, two samples were found reactive using ECLIA and unreactive using ELISA. These samples were reported reactive using IFA. The overall agreement for the two former methods was 98% (rZ0.98.1; P house Dot-ELISA included sensitivity of 79.5, specificity of 78.2, and accuracy of 78.9%, compared to ECLIA and ELISA. Positive and negative predictive values included 82.9 and 74.2%, respectively. A 100% sensitivity was found in in house Dot-ELISA for highly reactive sera in ECLIA and ELISA. ECLIA is appropriate for the first-line serological screening tests and can replace ELISA due to high speed, sensitivity, and specificity, particularly in large laboratories. Dot-ELISA is a rapid, sensitive, specific, cost-effective, user-friendly, and field-portable technique and hence can be used for screening toxoplasmosis, especially in rural fields or less equipped laboratories.

  10. Hepatitis B virus DNA quantification with the three-in-one (3io) method allows accurate single-step differentiation of total HBV DNA and cccDNA in biopsy-size liver samples.

    Science.gov (United States)

    Taranta, Andrzej; Tien Sy, Bui; Zacher, Behrend Johan; Rogalska-Taranta, Magdalena; Manns, Michael Peter; Bock, Claus Thomas; Wursthorn, Karsten

    2014-08-01

    Hepatitis B virus (HBV) replicates via reverse transcription converting its partially double stranded genome into the covalently closed circular DNA (cccDNA). The long-lasting cccDNA serves as a replication intermediate in the nuclei of hepatocytes. It is an excellent, though evasive, parameter for monitoring the course of liver disease and treatment efficiency. To develop and test a new approach for HBV DNA quantification in serum and small-size liver samples. The p3io plasmid contains an HBV fragment and human β-actin gene (hACTB) as a standard. Respective TaqMan probes were labeled with different fluorescent dyes. A triplex real-time PCR for simultaneous quantification of total HBV DNA, cccDNA and hACTB could be established. Three-in-one method allows simultaneous analysis of 3 targets with a lower limit of quantification of 48 copies per 20 μl PCR reaction and a wide range of linearity (R(2)>0.99, pDNA samples from HBV infected patients. Total HBV DNA and cccDNA could be quantified in 32 and 22 of 33 FFPE preserved liver specimens, respectively. Total HBV DNA concentrations quantified by the 3io method remained comparable with Cobas TaqMan HBV Test v2.0. The three-in-one protocol allows the single step quantification of viral DNA in samples from different sources. Therefore lower sample input, faster data acquisition, a lowered error and significantly lower costs are the advantages of the method. Copyright © 2014 Elsevier B.V. All rights reserved.

  11. Operational impact of using a vanadate oxidase method for direct bilirubin measurements at an academic medical center clinical laboratory.

    Science.gov (United States)

    Dhungana, Neha; Morris, Cory; Krasowski, Matthew D

    2017-08-01

    The aim of this study was to compare the operational impact of using vanadate oxidase versus diazo direct bilirubin assays for an academic medical center patient population. Retrospective study was done over an approximately 3.5 year period. The main automated chemistry instrumentation was a Roche Diagnostics cobas 8000 line. The Roche Direct Bilirubin assay was compared to Diazyme Laboratories Direct Bilirubin Assay and Randox Laboratories Direct Bilirubin assay using manufacturer's guidelines for hemolysis index, lipemia index, and analytical measurement range (AMR). Retrospective data was analyzed for 47,333 serum/plasma specimens that had clinical orders for direct bilirubin. A total of 5943 specimens (12.6%) exceeded the hemolysis index limit for the Roche method compared to only 0.2% and 0.05% of specimens for the Diazyme and Randox methods, respectively. The impact was particularly large on patients less than 2 years old, for which 51.3% of specimens exceeded the hemolysis index for the Roche method. A total of 1671 specimens (3.5%) exceeded the lipemia index limit for the Roche method compared to less than 0.1% for the Randox method. Lastly, 988 (2.1%) of specimens had direct bilirubin concentrations exceeding the upper AMR limit of 10 mg/dL [171 µmol/L] for the Roche assay compared to less than 1% of specimens for the vanadate oxidase methods. Vanadate oxidase direct bilirubin methods offer advantages over diazo methods in terms of less interference by hemolysis and lipemia, as well as wider AMR. The advantages are particularly evident for neonatal and infant populations.

  12. Correlation of Serum Cystatin C with Glomerular Filtration Rate in Patients Receiving Platinum-Based Chemotherapy

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    Ernesta Cavalcanti

    2016-01-01

    Full Text Available Objectives. Serum cystatin C seems to be an accurate marker of glomerular filtration rate (GFR compared to serum creatinine. The aim of this work was to explore the possibility of using serum cystatin C instead of serum creatinine to early predict renal failure in cancer patients who received platinum based chemotherapy. Design and Methods. Serum creatinine, serum cystatin C concentrations, and GFR were determined simultaneously in 52 cancer patients received carboplatin-based or cisplatin-based chemotherapy. Serum creatinine was assayed on Cobas C6000-Roche, serum cystatin C assay was performed on AIA 360-Tosoh, and GFR was determined in all patients, before the first cycle of chemotherapy and before the subsequent administrations. Results. In the overall series, for the prediction of a fall of GFR < 80 mL/min/1.73 m2, the AUC of the ROC curve for cystatin C was 0,667 and the best threshold was 1.135 mg/L (sensitivity 90.5%, specificity 61.1%. For a GFR fall < 60 mL/min/1.73 m2, the AUC of ROC curve for cystatin C was 74.3% and the best threshold was 1.415 mg/L (sensitivity 66.7%, specificity 73.2%. Conclusions. Baseline cystatin C values were not able to predict renal failure during subsequent treatment. In conclusion, serum cystatin C is not a reliable early marker to efficiently predict renal failure in patients receiving chemotherapy.

  13. Clinical, laboratory and instrumental methods of pre-surgical diagnosis of the parathyroid glands cancer

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    Natalia G. Mokrysheva

    2017-12-01

    Full Text Available Backgraund. When defining symptomatic primary hyperparathyroidism (PHPT, differential diagnosis between a benign and malignant neoplasm of parathyroid glands (PG may be challenging. The diagnosis of carcinoma or a benign tumor determines the extent of the surgical intervention and further observation tactics. Aims. The purpose of the study is to determine the clinical and laboratory and instrumental predictors of PG cancer. Materials and methods. A retrospective study included 385 patients with PHPT (273 with adenomas of the PG, 66 with hyperplasia, and 19 patients with cancer of the PG, who had been examined and operated from 2000 to 2014. The primary goal of the study was to define the level of ionized calcium (Ca++, parathyroid hormone (PTH, and the volume of the tumor PG specific for cancer of the PG. The level of parathyroid hormone (PTH was determined by electrochemoluminescent method on the Roche analyzer Cobas 6000; ionized calcium (Ca++ ion-selective method. The size of the PG was determined by the ellipse formula: V(cm3 = (A × B × C × 0.49 by ultrasound investigation using the Valuson E8 device from General Electric. Results. The group of patients with PG carcinoma showed the increased level of Ca++ of more than 1.60 mmol/l (p = 0.004 and increased level of PTH of more than 600 pg/ml (p = 0.03. The size of tumors of more than 6 cm3 is more typical to malignant neoplasm compared to the adenoma of the PG (p = 0.01. Conclusions. The group of patients with PHPT that are at risk of having PG carcinoma include individuals that have a combination of the following indicators: PTH levels of more than 600 pg/ml, an increase in ionized calcium of more than 1.60 mmol/l, the tumor size of more than 6 cm3.

  14. PENGEMBANGAN MODEL PEMBELAJARAN MEMBACA KRITIS TEKS ARGUMENTASI UNTUK SISWA KELAS X SMA/SMK

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    Anri Nofitria

    2017-10-01

    Full Text Available This development research can produce a Critical Reading model for argumentation text learning in class X SMA/SMK. The Critical Reading Model has nine stages, reading skimming; Make inquiries; Facts and opinions; Happy alignment; Main idea development framework; Tap refill content; Prevention of spelling errors, inaccurate choice of words, ineffectiveness of sentences, and inaccuracy of paragraph development; Conclude; And verification This development research uses the Dick and Carey procedures. The validation of the products carried out on three aspects, namely (a the feasibility of the concept of the model, (b the feasibility of the model steps, and (c the feasibility of the model on the level of understanding. Meanwhile, field testing was conducted to determine the feasibility and response of learners to the application of the model. Based on validation and field test results, it can be concluded that Critical Reading Model is suitable to be applied in learning to read critical argument text. Penelitian pengembangan ini dilaksanakan untuk menghasilkan model Membaca Kritis dalam pembelajaran teks argumentasi. Model Membaca Kritis memiliki sembilan tahap, yaitu (1 membaca skimming; (2 membuat pertanyaan; (3 mengidentifikasi fakta dan opini; (4 mengidentifikasi keselarasan; (5 mengidentifikasi pengembangan ide pokok; (6 mengidentifikasi ketepatan hubungan isi; (7 mengidentifikasi kesalahan ejaan, ketidaktepatan pilihan kata, dan ketidakefektifan kalimat, dan ketidaktepatan pengembangan paragraf; (8 menyimpulkan; (9 memverifikasi. Penelitian pengembangan ini menggunakan model Dick and Carey. Validasi produk yang dilakukan meliputi tiga aspek, yakni (a kelayakan konsep model, (b kelayakan langkah-langkah model, dan (c kelayakan model terhadap tingkat pemahaman. Sementara itu, uji coba produk dilakukan terhadap sembilan tahap model pembelajaran. Berdasarkan hasil validasi dan uji produk dapat disimpulkan bahwa model Membaca Kritis layak diterapkan

  15. Multicenter Evaluation of Cystatin C Measurement after Assay Standardization.

    Science.gov (United States)

    Bargnoux, Anne-Sophie; Piéroni, Laurence; Cristol, Jean-Paul; Kuster, Nils; Delanaye, Pierre; Carlier, Marie-Christine; Fellahi, Soraya; Boutten, Anne; Lombard, Christine; González-Antuña, Ana; Delatour, Vincent; Cavalier, Etienne

    2017-04-01

    Since 2010, a certified reference material ERM-DA471/IFCC has been available for cystatin C (CysC). This study aimed to assess the sources of uncertainty in results for clinical samples measured using standardized assays. This evaluation was performed in 2015 and involved 7 clinical laboratories located in France and Belgium. CysC was measured in a panel of 4 serum pools using 8 automated assays and a candidate isotope dilution mass spectrometry reference measurement procedure. Sources of uncertainty (imprecision and bias) were evaluated to calculate the relative expanded combined uncertainty for each CysC assay. Uncertainty was judged against the performance specifications derived from the biological variation model. Only Siemens reagents on the Siemens systems and, to a lesser extent, DiaSys reagents on the Cobas system, provided results that met the minimum performance criterion calculated according to the intraindividual and interindividual biological variations. Although the imprecision was acceptable for almost all assays, an increase in the bias with concentration was observed for Gentian reagents, and unacceptably high biases were observed for Abbott and Roche reagents on their own systems. This comprehensive picture of the market situation since the release of ERM-DA471/IFCC shows that bias remains the major component of the combined uncertainty because of possible problems associated with the implementation of traceability. Although some manufacturers have clearly improved their calibration protocols relative to ERM-DA471, most of them failed to meet the criteria for acceptable CysC measurements. © 2016 American Association for Clinical Chemistry.

  16. Evaluation of 12 blood glucose monitoring systems for self-testing: system accuracy and measurement reproducibility.

    Science.gov (United States)

    Freckmann, Guido; Baumstark, Annette; Schmid, Christina; Pleus, Stefan; Link, Manuela; Haug, Cornelia

    2014-02-01

    Systems for self-monitoring of blood glucose (SMBG) have to provide accurate and reproducible blood glucose (BG) values in order to ensure adequate therapeutic decisions by people with diabetes. Twelve SMBG systems were compared in a standardized manner under controlled laboratory conditions: nine systems were available on the German market and were purchased from a local pharmacy, and three systems were obtained from the manufacturer (two systems were available on the U.S. market, and one system was not yet introduced to the German market). System accuracy was evaluated following DIN EN ISO (International Organization for Standardization) 15197:2003. In addition, measurement reproducibility was assessed following a modified TNO (Netherlands Organization for Applied Scientific Research) procedure. Comparison measurements were performed with either the glucose oxidase method (YSI 2300 STAT Plus™ glucose analyzer; YSI Life Sciences, Yellow Springs, OH) or the hexokinase method (cobas(®) c111; Roche Diagnostics GmbH, Mannheim, Germany) according to the manufacturer's measurement procedure. The 12 evaluated systems showed between 71.5% and 100% of the measurement results within the required system accuracy limits. Ten systems fulfilled with the evaluated test strip lot minimum accuracy requirements specified by DIN EN ISO 15197:2003. In addition, accuracy limits of the recently published revision ISO 15197:2013 were applied and showed between 54.5% and 100% of the systems' measurement results within the required accuracy limits. Regarding measurement reproducibility, each of the 12 tested systems met the applied performance criteria. In summary, 83% of the systems fulfilled with the evaluated test strip lot minimum system accuracy requirements of DIN EN ISO 15197:2003. Each of the tested systems showed acceptable measurement reproducibility. In order to ensure sufficient measurement quality of each distributed test strip lot, regular evaluations are required.

  17. Prognostic importance of HPV and p16 in patients with oropharyngeal carcinoma in ENT clinic in Nove Zamky

    International Nuclear Information System (INIS)

    Kurinec, F.

    2017-01-01

    Purpose: The incidence of oropharyngeal squamous cell carcinoma (OPSCC) is rising in contrast to the decreasing incidence of carcinomas in other subsides of the head and neck, in spite of the reduced prevalence of smoking in developed countries. Human papilloma virus (HPV) infection, is now recognized as a significant marker in the onset of HPV positive OPSCC, with different epidemiological, clinical, anatomical, radiological, behavioural, biological and prognostic characteristics from HPV negative OPSCC. Aim: The aim of our work was to measure the impact of HPV infection and anti-oncogene p16 on survival and analyze lifestyles in our sample of patients. Material and methods: 61 patients with newly diagnosed oropharyngeal cancer in ENT clinic in Nove Zamky included in our study from March 2011 till February 2014. They were divided into two categories- HPV positive and HPV negative patients (n-39 versus 22). Results: HPV infection was analysed by DNA detection viral DNA with PCR (Cobas 4800 HPV Test) and expression E6/E7 oncogenes by mRNA. In addition, we detected p16 overexpression immunohistochemistry as a surrogate marker for high risk HPV(HR HPV). We analysed clinicopatological characteristic, smoking and alcohol abuse history, sexual behaviours and compared treatment and overall survival between HPV positive and HPV negative patients. The 2- year rates of overall survival were 86% versus 41% in HPV + and HPV – patients and 88% versus 25% in p16+ and p16- tumors, respectively. Conclusion: These observations lead to questions regarding management choices for patients based on tumour HPV and p16status with important consequences on treatment and on the role of targeted therapy and vaccines and over the upcoming years. (author)

  18. An OPTIMIZE study retrospective analysis for management of telaprevir-treated hepatitis C virus (HCV)-infected patients by use of the Abbott RealTime HCV RNA assay.

    Science.gov (United States)

    Sarrazin, Christoph; Dierynck, Inge; Cloherty, Gavin; Ghys, Anne; Janssen, Katrien; Luo, Donghan; Witek, James; Buti, Maria; Picchio, Gaston; De Meyer, Sandra

    2015-04-01

    Protease inhibitor (PI)-based response-guided triple therapies for hepatitis C virus (HCV) infection are still widely used. Noncirrhotic treatment-naive and prior relapser patients receiving telaprevir-based treatment are eligible for shorter, 24-week total therapy if HCV RNA is undetectable at both weeks 4 and 12. In this study, the concordance in HCV RNA assessments between the Roche High Pure System/Cobas TaqMan and Abbott RealTime HCV RNA assays and the impacts of different HCV RNA cutoffs on treatment outcome were evaluated. A total of 2,629 samples from 663 HCV genotype 1 patients receiving telaprevir/pegylated interferon/ribavirin in OPTIMIZE were analyzed using the High Pure System and reanalyzed using Abbott RealTime (limits of detection, 15.1 IU/ml versus 8.3 IU/ml; limits of quantification, 25 IU/ml versus 12 IU/ml, respectively). Overall, good concordance was observed between the assays. Using undetectable HCV RNA at week 4, 34% of the patients would be eligible for shorter treatment duration with Abbott RealTime versus 72% with the High Pure System. However, using Abbott RealTime, a similar proportion (74%) would be eligible. Of the patients receiving 24-week total therapy, 87% achieved a sustained virologic response with undetectable HCV RNA by the High Pure System or Abbott RealTime; however, 92% of the patients with undetectable HCV RNA by Abbott RealTime achieved a sustained virologic response. Using undetectable HCV RNA as the cutoff, the more sensitive Abbott RealTime assay would identify fewer patients eligible for shorter treatment than the High Pure System. Our data confirm the Abbott RealTime assay, to determine eligibility for shortened PI-based HCV treatment. (The study was registered with ClinicalTrials.gov under registration no. NCT01241760.). Copyright © 2015, American Society for Microbiology. All Rights Reserved.

  19. METODE BERMAIN LEGO DALAM UPAYA MENUMBUHKEMBANGKAN KECERDASAN KINESTETIK PADA ANAK USIA DINI (Sudi Kasus di Lembaga Pendidikan Manusia Unggul

    Directory of Open Access Journals (Sweden)

    Fitria Yulianti Ningtyas

    2018-01-01

    Full Text Available Penelitian ini membahas tentang upaya menumbuhkembangkan kecerdasan kinestetik pada anak usia dini melalui metode bermain Lego di Lembaga Pendidikan Manusia Unggul. Melalui permainan Lego, anak yang memiliki gaya belajar kinestetik akan terstimulasi kecerdasan dan kemampuannya, terutama kecerdasan kinestetiknya. Sebab pada dasarnya, anak dengan gaya belajar kinestetik, memiliki kelebihan dalam ruang gerak serta berlebih energinya. Sehingga saat belajar, anak membutuhkan ruang yang cukup luas, serta permainan yang menantang. Penelitian ini bertujuan: 1 Untuk mengetahui dan menganalisis bagaimana langkah-langkah dalam menerapkan metode bermain Lego dalam upaya menumbuhkembangkan kecerdasan kinestetik pada anak usia dini di Lembaga Pendidikan Manusia Unggul. 2 Untuk mengetahui dan menganalisis bagaimana pelaksanaan dalam menerapkan metode bermain Lego dalam upaya menumbuhkembangkan kecerdasan kinestetik pada anak usia dini di Lembaga Manusia Unggul. 3 Untuk mengetahui dan menganalisis dampak dan hasil dari penerapan metode bermain Lego dalam upaya menumbuhkembangkan kecerdasan kinestetik pada anak usia dini di Lembaga Pendidikan Manusia Unggul. 4 Untuk mengetahui dan menganalisis apa saja faktor pendukung dan penghambat dalam menerapkan metode bermain Lego dalam upaya menumbuhkembangkan kecerdasan kinestetik pada anak usia dini di Lembaga Manusia Unggul. Penelitian ini menggunakan pendekatan kualitatif naturalistik. Ciri yang menonjol dari penelitian ini adalah cara pengamatan dan pengumpulan datanya dilakukan dalam latar/setting alamiah. Artinya tanpa memanipulasi subyek yang diteliti. Penelitian ini mencakup juga keyakinan terhadap sifat dasar dari realitas (yang diamati, hubungan antara orang yang mencoba mengetahui sesuatu (peneliti dan hal yang mereka coba ketahui (yang diteliti, peranan/pengaruh dari nilai-nilai (yang dianut peneliti dan variable-variabel lainnya yang serupa itu.Kajian data pada penelitian ini didapat dari hasil pengamatan

  20. Chlamydia trachomatis infection and sexual behaviour among female students attending higher education in the Republic of Ireland

    Directory of Open Access Journals (Sweden)

    Vellinga Akke

    2009-10-01

    Full Text Available Abstract Background There are no prevalence data on Chlamydia trachomatis relating to female students attending higher education available for the Republic of Ireland. This information is required to guide on the necessity for Chlamydia screening programmes in higher education settings. This research aimed to determine the prevalence of and predictive risk factors for Chlamydia trachomatis genital infection among female higher education students in Ireland. Methods All females presenting during one-day periods at Student Health Units in three higher education institutions in two cities in the Republic of Ireland were invited to participate. Participants completed a questionnaire on lifestyle and socio-demographic factors and provided a urine sample. Samples were tested for C. trachomatis DNA by a PCR based technique (Cobas Amplicor, Roche. To examine possible associations between a positive test and demographic and lifestyle risk factors, a univariate analysis was performed. All associations with a p value Results Of the 460 sexually active participants 22 tested positive (prevalence 4.8%; 95% CI 3.0 to 7.1%. Variables associated with significantly increased risk were current suggestive symptoms, two or more one-night stands and three or more lifetime sexual partners. The students displayed high-risk sexual behaviour. Conclusion The prevalence of C. trachomatis infection and the lack of awareness of the significance of suggestive symptoms among sexually experienced female students demonstrate the need for a programme to test asymptomatic or non-presenting higher education students. The risk factors identified by multivariate analysis may be useful in identifying those who are most likely to benefit from screening. Alcohol abuse, condom use, sexual behaviour (at home and abroad and, knowledge of sexually transmitted infections (STIs (including asymptomatic nature or relevant symptoms were identified as target areas for health promotion strategies

  1. PENGEMBANGAN MODEL PELATIHAN SOFT-SKILLS PADA SISWA SEKOLAH MENENGAH PERTAMA NEGERI (SMPN DI KOTA MATARAM

    Directory of Open Access Journals (Sweden)

    Anik Darmiany

    2016-06-01

    Full Text Available Abstrak : Penelitian dan pengembangan ini bertujuan menghasilkan model pelatihan soft-skill khususnya keterampilan komunikasi dan kendali emosi siswa sekolah menengah pertama negeri (SMPN di kota Mataram. Metode penelitian dan pengembangan dilakukan melalui tiga tahap dari sepuluh langkah Borg & Gall yaitu, (1 penelitian awal (analisis kebutuhan, (2 pengembangan model pelatihan, (3 uji coba dan evaluasi model. Hasil penelitian menunjukkan bahwa pengembangan model pelatihan soft-skill menghasilkan pedoman pelatihan untuk konselor dan siswa, serta materi pelatihan soft-skill yang memenuhi kriteria akseptabel dari kegunaan, kemanfaatan, dan kelayakan. Disamping itu hasil penelitian menunjukkan pula bahwa terdapat perbedaan skor antara pre-test dan post-test keterampilan mengelola emosi dari tidak terampil menjadi sangat trampil, dan keterampilan komunikasi dari tidak terampil menjadi cukup terampil.   Abstract: Research and development is aimed to produce soft-skills training models especially in communication skills and emotional control student junior high school (SMP in Mataram city. Research and development method is carried out through three stages from the ten steps of Borg & Gall, they are; (1 the preliminary research (needs analysis, (2 the development of training model, (3 Model evaluation and try out. The results show that the development of soft-skills training model develop training manual for counselors and students, as well as soft-skills training materials that meet acceptable criteria of usability, usefulness and feasibility. Besides, the results showed also that there is a difference in scores between pre-test and post-test in skills at managing emotions from unskilled to be very skilled, and communication skills from unskilled become quite skilled.

  2. Uji kinerja Turbin arus laut-Twin Hull 10 Kilowatt di Jembatan Suramadu

    Directory of Open Access Journals (Sweden)

    Afian Kasharjanto

    2017-11-01

    Full Text Available Abstrak Melalui Program Pengembangan Teknologi Industri (PPTI - Ristekdikti tahun 2016 telah di lakukan uji fungsi Turbin arus laut Twin Turbine -10 Kilowatt selama 1 (satu bulan sejak 28 Nopember sampai dengan 30 Desember 2016. Turbin yang di gunakan adalah turbin yang pernah di uji pada tahun 2015 dilokasi yang sama  yaitu di bawah Jembatan Suramadu – Pile   56 tetapi rasio transmisi yang pada awalnya di buat 1 : 22,5 di turunkan menjadi 1: 12. Perubahan di lakukan karena putaran generator melebihi putaran maksimum yang di ijinkan generator sehingga terjadi beban arus besar (melebihi kapasitas Inverter sehingga Inverter dapat terbakar. Tujuan dari kegiatan adalah untuk mengetahui daya listrik yang dapat di hasilkan oleh turbin tipe dua rotor (Twin Turbine untuk operasional di bawah Jembatan.  Melalui pengukuran langsung selama 30 hari siang dan malam, akan di dapat data daya listrik maksimal sebagai fungsi dari kecepatan arus laut dan ukuran rotor Tubin. Data kemudian di olah untuk mendapatkan nilai besaran daya listrik dan efisiensi. Cutt-in speed terjadi pada kecepatan arus 0,6 m/dt dan menghasilkan daya minimal pada masing – masing generator sebesar 480 Watt dan kecepatan arus maksimal terjadi pada 1,10 m/dt , menghasilkan daya maksimal 2,230 watt.Beban lampu di distribusikan bukan hanya di dalam turbin tetapi juga di tempelkan pada tiang Plie – 56 sebagai uji coba untuk penerangan di sepanjang jalan raya pada Pile-56 Jembatan Suramadu.           Kata kunci : Uji Fungsi turbin, Jembatan Suramadu, Rasio transmisi mekanik, Cutt-in speed

  3. Performance evaluation of LUMIPULSE G1200 autoimmunoanalyzer for the detection of serum hepatitis B virus markers.

    Science.gov (United States)

    Choi, Seung Jun; Park, Yongjung; Lee, Eun Young; Kim, Sinyoung; Kim, Hyon-Suk

    2013-05-01

    We evaluated recently introduced automated immunoassay analyzer LUMIPULSE G1200 (Fujirebio, Inc., Tokyo, Japan) for detecting serologic hepatitis B virus (HBV) markers by comparison with the results by ARCHITECT i4000SR (Abbott, Abbott Park, IL). Precision performance was evaluated over 20 days. HBV surface antigen (HBsAg), HBV e antigen (HBeAg), antibodies to HBV core antigen (anti-HBc), antibodies to HBeAg (anti-HBe), and antibodies to HBsAg (anti-HBs) in a total of 1,000 serum samples were assessed by the two analyzers. Discrepant results were retested by COBAS e411 (Roche Diagnostics, Mannheim, Germany). LUMIPULSE showed excellent precision performance of total imprecision less than 3.5% coefficient of variation. The qualitative results between the two analyzers were agreed with each other in 92.0-99.8% of the specimens according to the different HBV markers. The degrees of reactions for HBeAg were moderately correlated between the two analyzers (r = 0.60), and those of other HBV markers were well correlated (r = 0.80 or greater). However, there were 183 discrepancies among 1,000 cases, and most of them showed degree of reaction around the cutoff values. LUMIPULSE G1200 showed well-concordant results with ARCITHECT for hepatitis B serologic tests. However, results near the cutoff values would need to be retested with other immunoassay or molecular methods, when the serological profiles of HBV markers are unusual or are not correlated to the clinical conditions of the patient, due to discrepancies between the immunoassay analyzers. © 2013 Wiley Periodicals, Inc.

  4. Benefit of hepatitis C virus core antigen assay in prediction of therapeutic response to interferon and ribavirin combination therapy.

    Science.gov (United States)

    Takahashi, Masahiko; Saito, Hidetsugu; Higashimoto, Makiko; Atsukawa, Kazuhiro; Ishii, Hiromasa

    2005-01-01

    A highly sensitive second-generation hepatitis C virus (HCV) core antigen assay has recently been developed. We compared viral disappearance and first-phase kinetics between commercially available core antigen (Ag) assays, Lumipulse Ortho HCV Ag (Lumipulse-Ag), and a quantitative HCV RNA PCR assay, Cobas Amplicor HCV Monitor test, version 2 (Amplicor M), to estimate the predictive benefit of a sustained viral response (SVR) and non-SVR in 44 genotype 1b patients treated with interferon (IFN) and ribavirin. HCV core Ag negativity could predict SVR on day 1 (sensitivity = 100%, specificity = 85.0%, accuracy = 86.4%), whereas RNA negativity could predict SVR on day 7 (sensitivity = 100%, specificity = 87.2%, accuracy = 88.6%). None of the patients who had detectable serum core Ag or RNA on day 14 achieved SVR (specificity = 100%). The predictive accuracy on day 14 was higher by RNA negativity (93.2%) than that by core Ag negativity (75.0%). The combined predictive criterion of both viral load decline during the first 24 h and basal viral load was also predictive for SVR; the sensitivities of Lumipulse-Ag and Amplicor-M were 45.5 and 47.6%, respectively, and the specificity was 100%. Amplicor-M had better predictive accuracy than Lumipulse-Ag in 2-week disappearance tests because it had better sensitivity. On the other hand, estimates of kinetic parameters were similar regardless of the detection method. Although the correlations between Lumipulse-Ag and Amplicor-M were good both before and 24 h after IFN administration, HCV core Ag seemed to be relatively lower 24 h after IFN administration than before administration. Lumipulse-Ag seems to be useful for detecting the HCV concentration during IFN therapy; however, we still need to understand the characteristics of the assay.

  5. Evaluation of a high resolution genotyping method for Chlamydia trachomatis using routine clinical samples.

    Directory of Open Access Journals (Sweden)

    Yibing Wang

    2011-02-01

    Full Text Available Genital chlamydia infection is the most commonly diagnosed sexually transmitted infection in the UK. C. trachomatis genital infections are usually caused by strains which fall into two pathovars: lymphogranuloma venereum (LGV and the genitourinary genotypes D-K. Although these genotypes can be discriminated by outer membrane protein gene (ompA sequencing or multi-locus sequence typing (MLST, neither protocol affords the high-resolution genotyping required for local epidemiology and accurate contact-tracing.We evaluated variable number tandem repeat (VNTR and ompA sequencing (now called multi-locus VNTR analysis and ompA or "MLVA-ompA" to study local epidemiology in Southampton over a period of six months. One hundred and fifty seven endocervical swabs that tested positive for C. trachomatis from both the Southampton genitourinary medicine (GUM clinic and local GP surgeries were tested by COBAS Taqman 48 (Roche PCR for the presence of C. trachomatis. Samples tested as positive by the commercial NAATs test were genotyped, where possible, by a MLVA-ompA sequencing technique. Attempts were made to isolate C. trachomatis from all 157 samples in cell culture, and 68 (43% were successfully recovered by repeatable passage in culture. Of the 157 samples, 93 (i.e. 59% were fully genotyped by MLVA-ompA. Only one mixed infection (E & D in a single sample was confirmed. There were two distinct D genotypes for the ompA gene. Most frequent ompA genotypes were D, E and F, comprising 20%, 41% and 16% of the type-able samples respectively. Within all genotypes we detected numerous MLVA sub-types.Amongst the common genotypes, there are a significant number of defined MLVA sub-types, which may reflect particular background demographics including age group, geography, high-risk sexual behavior, and sexual networks.

  6. Hepatoprotection and neuroprotection induced by low doses of IGF-II in aging rats

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    Barhoum Rima

    2011-07-01

    Full Text Available Abstract Background GH and IGFs serum levels decline with age. Age-related changes appear to be associated to decreases in these anabolic hormones. We have previously demonstrated that IGF-I replacement therapy improves insulin resistance, lipid metabolism and reduces oxidative damage (in brain and liver in aging rats. Using the same experimental model, the aim of this work was to study whether the exogenous administration of IGF-II, at low doses, acts analogous to IGF-I in aging rats. Methods Three experimental groups were included in this study: young healthy controls (yCO, 17 weeks old; untreated old rats (O, 103 weeks old; and aging rats treated with IGF-II (O+IGF-II, 2 μg * 100 g body weight-1 * day-1 for 30 days. Analytical parameters were determined in serum by routine laboratory methods using an autoanalyzer (Cobas Mira; Roche Diagnostic System, Basel, Switzerland. Serum levels of hormones (testosterone, IGF-I and insulin were assessed by RIA. Serum Total Antioxidant Status was evaluated using a colorimetric assay. Mitochondrial membrane potential was evaluated using rhodamine 123 dye (adding different substrates to determine the different states. ATP synthesis in isolated mitochondria was determined by an enzymatic method. Results Compared with young controls, untreated old rats showed a reduction of IGF-I and testosterone levels with a decrease of serum total antioxidant status (TAS. IGF-II therapy improved serum antioxidant capability without modifying testosterone and IGF-I circulating concentrations. In addition, IGF-II treatment reduced oxidative damage in brain and liver, improving antioxidant enzyme activities and mitochondrial function. IGF-II was also able to reduce cholesterol and triglycerides levels increasing free fatty acids concentrations. Conclusions We demonstrate that low doses of IGF-II induce hepatoprotective, neuroprotective and metabolic effects, improving mitochondrial function, without affecting testosterone and

  7. An automated quantitative DNA image cytometry system detects abnormal cells in cervical cytology with high sensitivity.

    Science.gov (United States)

    Wong, O G; Ho, M W; Tsun, O K; Ng, A K; Tsui, E Y; Chow, J N; Ip, P P; Cheung, A N

    2018-03-26

    To evaluate the performance of an automated DNA-image-cytometry system as a tool to detect cervical carcinoma. Of 384 liquid-based cervical cytology samples with available biopsy follow-up were analyzed by both the Imager System and a high-risk HPV test (Cobas). The sensitivity and specificity of Imager System for detecting biopsy proven high-grade squamous intraepithelial lesion (HSIL, cervical intraepithelial neoplasia [CIN]2-3) and carcinoma were 89.58% and 56.25%, respectively, compared to 97.22% and 23.33% of HPV test but additional HPV 16/18 genotyping increased the specificity to 69.58%. The sensitivity and specificity of the Imager System for predicting HSIL+ (CIN2-3+) lesions among atypical squamous cells of undetermined significance samples were 80.00% and 70.53%, respectively, compared to 100% and 11.58% of HPV test whilst the HPV 16/18 genotyping increased the specificity to 77.89%. Among atypical squamous cells-cannot exclude HSIL, the sensitivity and specificity of Imager System for predicting HSIL+ (CIN2-3+) lesions upon follow up were 82.86% and 33.33%%, respectively, compared to 97.14% and 4.76% of HPV test and the HPV 16/18 genotyping increased the specificity to 19.05%. Among low-grade squamous intraepithelial lesion cases, the sensitivity and specificity of the Imager System for predicting HSIL+ (CIN2-3+) lesions were 66.67% and 35.71%%, respectively, compared to 66.67% and 29.76% of HPV test while HPV 16/18 genotyping increased the specificity to 79.76%. The overall results of imager and high-risk HPV test agreed in 69.43% (268) of all samples. The automated imager system and HPV 16/18 genotyping can enhance the specificity of detecting HSIL+ (CIN2-3+) lesions. © 2018 John Wiley & Sons Ltd.

  8. Genotype 3 is the predominant hepatitis C genotype in a multi-ethnic Asian population in Malaysia.

    Science.gov (United States)

    Ho, Shiaw-Hooi; Ng, Kee-Peng; Kaur, Harvinder; Goh, Khean-Lee

    2015-06-01

    Genotypes of hepatitis C virus (HCV) are distributed differently across the world. There is a paucity of such data in a multi-ethnic Asian population like Malaysia. The objectives of this study were to determine the distribution of HCV genotypes between major ethnic groups and to ascertain their association with basic demographic variables like age and gender. This was a cross-sectional prospective study conducted from September 2007 to September 2013. Consecutive patients who were detected to have anti-HCV antibodies in the University of Malaya Medical Centre were included and tested for the presence of HCV RNA using Roche Cobas Amplicor Analyzer and HCV genotype using Roche single Linear Array HCV Genotyping strip. Five hundred and ninety-six subjects were found to have positive anti-HCV antibodies during this period of time. However, only 396 (66.4%) were HCV RNA positive and included in the final analysis. Our results showed that HCV genotype 3 was the predominant genotype with overall frequency of 61.9% followed by genotypes 1 (35.9%), 2 (1.8%) and 6 (0.5%). There was a slightly higher prevalence of HCV genotype 3 among the Malays when compared to the Chinese (P=0.043). No other statistical significant differences were observed in the distribution of HCV genotypes among the major ethnic groups. There was also no association between the predominant genotypes and basic demographic variables. In a multi-ethnic Asian society in Malaysia, genotype 3 is the predominant genotype among all the major ethnic groups with genotype 1 as the second commonest genotype. Both genotypes 2 and 6 are uncommon. Neither genotype 4 nor 5 was detected. There is no identification of HCV genotype according to ethnic origin, age and gender.

  9. Immunohistochemical detection of the BRAF V600E mutation in papillary thyroid carcinoma. Evaluation against real-time polymerase chain reaction.

    Science.gov (United States)

    Paja Fano, Miguel; Ugalde Olano, Aitziber; Fuertes Thomas, Elena; Oleaga Alday, Amelia

    2017-02-01

    The BRAF V600E mutation is the most common genetic change in papillary thyroid carcinoma and is associated with a poorer clinical course. Usual methods for its study (DNA sequencing or molecular test based on PCR) are expensive and time-consuming. Recently, immunohistochemistry (IHC) for BRAF mutation has been introduced. To compare the results of IHC and real time PCR (RT-PCR) in the detection of BRAF V600E mutation in papillary thyroid carcinoma. Analysis of clinical and pathological differences depending on RT-PCR results is included. A prospective study was performed in 82 consecutive samples, 54 of them taken through a core needle biopsy. IHC was performed on tissue fixed for 24hours with 10% neutral formalin using the anti-BRAF V600E (VE-1) mouse monoclonal primary antibody and was rated as positive or negative. DNA was extracted from formalin-fixed, paraffin-embedded tissues by manual microdissection, and BRAF mutation was detected by RT-PCR using the Cobas® 4800 BRAF V600 mutation test (Roche). Both techniques were concordant in 81 cases, and BRAF was positive in 49. Discordance appeared in a follicular variant showing positive IHC and negative RT-PCR, attributed to histological heterogeneity. Cost of materials for IHC was less than half of the cost for RT-PCR. IHC appears to be a reliable, economical and easily available alternative to molecular biology techniques for routine detection of the BRAF V600E mutation in papillary thyroid carcinoma patients, provided optimal fixation conditions are used. It may be a useful technique in hospitals with no access to molecular biology techniques. Copyright © 2017 SEEN. Publicado por Elsevier España, S.L.U. All rights reserved.

  10. Plasma biochemistry and urinalysis variables of koalas (Phascolarctos cinereus) with and without oxalate nephrosis.

    Science.gov (United States)

    Speight, K Natasha; Haynes, Julie I; Boardman, Wayne; Breed, William G; Taggart, David A; Rich, Brian; Woolford, Lucy

    2014-06-01

    Oxalate nephrosis is a highly prevalent disease in the Mount Lofty Ranges koala population in South Australia, but associated clinicopathologic findings remain undescribed. The aims of this study were to determine plasma biochemical and urinalysis variables, particularly for renal function and urinary crystal morphology and composition, in koalas with oxalate nephrosis. Blood and urine samples from Mount Lofty Ranges koalas with oxalate nephrosis were compared with those unaffected by renal oxalate crystal deposition from Mount Lofty and Kangaroo Island, South Australia and Moggill, Queensland. Plasma and urine biochemistry variables were analyzed using a Cobas Bio analyzer, and urinary oxalate by high-performance liquid chromatography. Urinary crystal composition was determined by infrared spectroscopy and energy dispersive X-ray analysis. Azotemia (urea > 6.6 mmol/L, creatinine > 150 μmol/L) was found in 93% of koalas with oxalate nephrosis (n = 15). All azotemic animals had renal insufficiency (urine specific gravity [USG] < 1.035), and in 83%, USG was < 1.030. Koalas with oxalate nephrosis were hyperoxaluric compared with Queensland koalas (P < .01). Urinary crystals from koalas with oxalate nephrosis had atypical morphology and were composed of calcium oxalate. Mount Lofty Ranges koalas unaffected by renal oxalate crystal deposition had renal insufficiency (43%), although only 14% had USG < 1.030 (n = 7). Unaffected Mount Lofty Ranges and Kangaroo Island koalas were hyperoxaluric compared with Queensland koalas (P < .01). Koalas with oxalate nephrosis from the Mount Lofty Ranges had renal insufficiency, hyperoxaluria, and pathognomonic urinary crystals. The findings of this study will aid veterinary diagnosis of this disease. © 2014 American Society for Veterinary Clinical Pathology and European Society for Veterinary Clinical Pathology.

  11. [To consider negative viral loads below the limit of quantification can lead to errors in the diagnosis and treatment of hepatitis C virus infection].

    Science.gov (United States)

    Acero Fernández, Doroteo; Ferri Iglesias, María José; López Nuñez, Carme; Louvrie Freire, René; Aldeguer Manté, Xavier

    2013-01-01

    For years many clinical laboratories have routinely classified undetectable and unquantifiable levels of hepatitis C virus RNA (HCV-RNA) determined by RT-PCR as below limit of quantification (BLOQ). This practice might result in erroneous clinical decisions. To assess the frequency and clinical relevance of assuming that samples that are BLOQ are negative. We performed a retrospective analysis of RNA determinations performed between 2009 and 2011 (Cobas/Taqman, lower LOQ: 15 IU/ml). We distinguished between samples classified as «undetectable» and those classified as «<1.50E+01IU/mL» (BLOQ). We analyzed 2.432 HCV-RNA measurements in 1.371 patients. RNA was BLOQ in 26 samples (1.07%) from 23 patients (1.68%). BLOQ results were highly prevalent among patients receiving Peg-Riba: 23 of 216 samples (10.6%) from 20 of 88 patients receiving treatment (22.7%). The clinical impact of BLOQ RNA samples was as follows: a) 2 patients initially considered to have negative results subsequently showed quantifiable RNA; b) 8 of 9 patients (88.9%) with BLOQ RNA at week 4 of treatment later showed sustained viral response; c) 3 patients with BLOQ RNA at weeks 12 and 48 of treatment relapsed; d) 4 patients with BLOQ RNA at week 24 and/or later had partial or breakthrough treatment responses, and e) in 5 patients the impact were null or could not be ascertained. This study suggests that BLOQ HCV-RNA indicates viremia and that equating a BLOQ result with a negative result can lead to treatment errors. BLOQ results are highly prevalent in on-treatment patients. The results of HCV-RNA quantification should be classified clearly, distinguishing between undetectable levels and levels that are BLOQ. Copyright © 2013 Elsevier España, S.L. and AEEH y AEG. All rights reserved.

  12. PENGEMBANGAN PANDUAN PELATIHAN EFIKASI DIRI DALAM HUBUNGAN PERTEMANAN MELALUI STRATEGI EXPERIENTIAL LEARNING BAGI SISWA SMP

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    Layli Novita

    2016-06-01

    Full Text Available Abstract: The research aims to develop self-efficacy training guides in friendship through experiential learning strategies for junior high school students, so that the counselor can use it as a media of social guidance services for the student especially to improve his confidence in the friendship. This training guide is printed teaching materials containing substance, operational measures, and the evaluation. The procedur of this developmental research is adapted from Borg and Galls (1983 which did in 3 step; 1 plannin;(2 developmental product; and (3 try out of the product. Based on the results of data analysis from expert assessment and potential users as well as revisions that are made in accordance with the advice and input to the product, it can be concluded that this training guide meets the good acceptance criteria and effectively proven in improving students self-efficacy in peer friendships. Abstrak: Penelitian ini bertujuan untuk menghasilkan  panduan pelatihan efikasi diri dalam hubungan pertemanan melalui strategi experiential learning bagi siswa SMP, sehingga konselor dapat menggunakannya sebagai media dalam memberikan layanan bimbingan pribadi-sosial kepada siswa khususnya dalam meningkatkan keyakinan diri di dalam hubungan pertemanan. Panduan pelatihan ini adalah bahan ajar berbasis buku cetakan yang berisi materi, langkah kegiatan, serta evaluasi.Prosedur penelitian dan pengembanganpanduan pelatihan efikasi diri dalam hubungan pertemanan ini  mengadaptasi pengembangan Borg and Gall (1983 yang dilakukan dalam 3 tahapan yaitu, (1 perencanaan pengembangan produk, (2 pengembangan produk, dan (3Uji Coba Produk. Berdasarkan hasil analisis data penilaian ahli dan calon pengguna serta revisi-revisi yang dilakukan sesuai dengan saran dan masukan terhadap produk ini, dapat disimpulkan bahwa panduan pelatihan ini memenuhi kriteria keberterimaan yang baik dan terbukti efektif dalam meningkatkan efikasi diri siswa didalam hubungan

  13. PENGARUH INFUS BUAH PARE (Momordica charantia L TERHADAP KELENJAR PROSTAT TIKUS PUTIH

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    M. Wien Winarno

    2012-10-01

    Full Text Available Buah pare (Momordica charantia L.. selain dikenal sebagai sayuran juga digunakan sebagai obat tradisional. Beberapa hasil penelitian menyimpulkan bahwa perasan buah pare dapat menurunkan kadar glukosa darah. Sebagai kontrasepsi pria, buah pare terbukti menyebabkan abnormalitas struktur morfologi sperma dan menurunkan kadar testosteron darah. Ekstrak buah pare secara invitro menghambat pertumbuhan sel-sel kanker prostat. Buah pare mengandung momordisin, momordin, asam resinal dan sterol. Berdasarkan efeknya yaitu dapat menurunkan hormon testosteron, dan secara invitro menghambat sel-sel kanker prostat dan adanya kandungan sterol, maka dilakukan penelitian Pengaruh infus buah pare (M. charantia L. terhadap kelenjar prostat tikus putih. Penelitian menggunakan hewan coba tikus putih, galur Wistar dengan bobot badan 180-200 gram. Rancangan penelitian yang digunakan "Rancangan Acak Lengkap". Bahan yang diteliti berupa infus buah pare dengan dosis pemberian 625 mg, 1250 mg, 2500 mg dan 5000 mg/kg bb. Sebagai pembanding digunakan akuades. Bahan diberikan secara oral, satu kali sehari selama 30 hari. Hari ke-31 hewan dibunuh, diambil kelenjar prostatnya untuk dibuat preparat histopatologi. Pengamatan meliputi berat dan ketebalan sel epitel kelenjar prostat. Hasilnya, pemberian infus buah pare pada semua dasis dibandingkan dengan akuades (kontrol berpengaruh sangat nyata (P<0,01 terhadap berat kelenjar prostat. Sementara infus buah pare dosis 2500 mg/kg bb. berpengaruh sangat nyata (P<0,01 terhadap tebal set epitel kelenjar prostat. Dengan demikian dapat disimpulkan bahwa infus buah pare dapat menurunkan berat kelenjar prostat normal dan menipiskan sel epitel dari kelenjar prostat.   Kata kunci : pare, Momordica charantia L., kelenjar prostat

  14. The Effects of Sodium Bicarbonate and Sodium Citrate on Blood pH, HCO3-, Lactate Metabolism and Time to Exhaustion

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    Soetanto Hartono

    2017-02-01

    Full Text Available The purpose of this study was to compare the effects of sodium bicarbonate and sodium citrate in increasing lactate concentration, blood pH, HCO3-, and time to exhaustion. Increased time to exhaustion is an advantage since the athletes can do more anaerobic work. Exhaustion could be delayed by increasing HCO3- to catch H+ produced by lactate metabolism to form H2O and CO2. The design of this research was randomized pretest posttest control group design. Thirty badminton student players were randomly selected and randomly assigned to three groups. The first group (the control group was given placebo, NaCl .9 g/dl, the second group was given sodium bicarbonate 300 mg/kg in 500 ml aqua, and the third group was given sodium citrate 300 mg/kg in 500 ml aqua. Blood pH and bicarbonate ion (HCO3- were measured through Opti Medical Blood gas Analyzer. Lactate was measured by Cobas Roche lactate Analyzer. Data was analyzed using Manova with .05 significant level. Blood pH of the groups taking sodium bicarbonate and sodium citrate were higher significantly against control group (p.05. Sodium bicarbonate is better than sodium citrate, although both were better than control (p<.05. Sodium bicarbonate is better than sodium citrate in increasing blood pH and time to exhaustion. The disadvantage of using sodium bicarbonate is that it can cause gastrointestinal problem and headache, so it is not advisable to be used by athletes who have the symptoms.

  15. System Accuracy Evaluation of Four Systems for Self-Monitoring of Blood Glucose Following ISO 15197 Using a Glucose Oxidase and a Hexokinase-Based Comparison Method.

    Science.gov (United States)

    Link, Manuela; Schmid, Christina; Pleus, Stefan; Baumstark, Annette; Rittmeyer, Delia; Haug, Cornelia; Freckmann, Guido

    2015-04-14

    The standard ISO (International Organization for Standardization) 15197 is widely accepted for the accuracy evaluation of systems for self-monitoring of blood glucose (SMBG). Accuracy evaluation was performed for 4 SMBG systems (Accu-Chek Aviva, ContourXT, GlucoCheck XL, GlucoMen LX PLUS) with 3 test strip lots each. To investigate a possible impact of the comparison method on system accuracy data, 2 different established methods were used. The evaluation was performed in a standardized manner following test procedures described in ISO 15197:2003 (section 7.3). System accuracy was assessed by applying ISO 15197:2003 and in addition ISO 15197:2013 criteria (section 6.3.3). For each system, comparison measurements were performed with a glucose oxidase (YSI 2300 STAT Plus glucose analyzer) and a hexokinase (cobas c111) method. All 4 systems fulfilled the accuracy requirements of ISO 15197:2003 with the tested lots. More stringent accuracy criteria of ISO 15197:2013 were fulfilled by 3 systems (Accu-Chek Aviva, ContourXT, GlucoMen LX PLUS) when compared to the manufacturer's comparison method and by 2 systems (Accu-Chek Aviva, ContourXT) when compared to the alternative comparison method. All systems showed lot-to-lot variability to a certain degree; 2 systems (Accu-Chek Aviva, ContourXT), however, showed only minimal differences in relative bias between the 3 evaluated lots. In this study, all 4 systems complied with the evaluated test strip lots with accuracy criteria of ISO 15197:2003. Applying ISO 15197:2013 accuracy limits, differences in the accuracy of the tested systems were observed, also demonstrating that the applied comparison method/system and the lot-to-lot variability can have a decisive influence on accuracy data obtained for a SMBG system. © 2015 Diabetes Technology Society.

  16. Performance of two updated blood glucose monitoring systems: an evaluation following ISO 15197:2013.

    Science.gov (United States)

    Pleus, Stefan; Baumstark, Annette; Rittmeyer, Delia; Jendrike, Nina; Haug, Cornelia; Freckmann, Guido

    2016-05-01

    Objective For patients with diabetes, regular self-monitoring of blood glucose (SMBG) is essential to ensure adequate glycemic control. Therefore, accurate and reliable blood glucose measurements with SMBG systems are necessary. The international standard ISO 15197 describes requirements for SMBG systems, such as limits within which 95% of glucose results have to fall to reach acceptable system accuracy. The 2013 version of this standard sets higher demands, especially regarding system accuracy, than the currently still valid edition. ISO 15197 can be applied by manufacturers to receive a CE mark for their system. Research design and methods This study was an accuracy evaluation following ISO 15197:2013 section 6.3 of two recently updated SMBG systems (Contour * and Contour TS; Bayer Consumer Care AG, Basel, Switzerland) with an improved algorithm to investigate whether the systems fulfill the requirements of the new standard. For this purpose, capillary blood samples of approximately 100 participants were measured with three test strip lots of both systems and deviations from glucose values obtained with a hexokinase-based comparison method (Cobas Integra † 400 plus; Roche Instrument Center, Rotkreuz, Switzerland) were determined. Percentages of values within the acceptance criteria of ISO 15197:2013 were calculated. This study was registered at clinicaltrials.gov (NCT02358408). Main outcome Both updated systems fulfilled the system accuracy requirements of ISO 15197:2013 as 98.5% to 100% of the results were within the stipulated limits. Furthermore, all results were within the clinically non-critical zones A and B of the consensus error grid for type 1 diabetes. Conclusions The technical improvement of the systems ensured compliance with ISO 15197 in the hands of healthcare professionals even in its more stringent 2013 version. Alternative presentation of system accuracy results in radar plots provides additional information with certain advantages. In addition

  17. Origem e distribuição do nervo isquiático no veado-catingueiro (Mazama gouazoubira

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    Tracy Martina M. Martins

    2013-02-01

    Full Text Available Este estudo teve como objetivo descrever a origem e a distribuição do nervo isquiático no veado-catingueiro (Mazama gouazoubira. Dois animais da espécie, obtidos post mortem por atropelamento em rodovia, foram utilizados para o estudo, obedecendo aos critérios da Lei Vigente (Lei 1.153/95. Através da dissecação, a pele foi completamente removida e os animais foram fixados em solução aquosa de formaldeído a 10%. Através de um acesso dorso-lateral, os músculos glúteo superficial, bíceps femoral e glúteo médio foram seccionados no seu local de inserção e rebatidos. Desta forma foi possível visualizar a origem e a distribuição do nervo isquiático, em ambos os antímeros dos animais. As imagens foram registradas com câmera fotográfica digital (Câmera Sony a200, 10.2mpx e os resultados foram descritos com base na Nomina Anatômica Veterinária. Os dados da origem do nervo isquiático nos dois espécimes estudados mostraram que esta ocorre a partir dos ramos ventrais de L6 e S1, podendo ter contribuição de S2. Após a sua emergência pelo forame isquiático maior, em ambos os antímeros, o nervo isquiático fornece ramos para suprir os músculos glúteo médio, glúteo profundo, glúteo superficial, gluteobíceps, bíceps da coxa, semimembranoso, semitendinoso e gastrocnêmio. Próximo ao meio da coxa o nervo isquiático divide-se em nervo tibial e nervo fibular comum os quais inervam os músculos da região distal do membro pélvico. Além disso, o nervo cutâneo caudal da sura pode se originar dos nervos fibular comum ou do nervo tibial. Em conclusão, nos espécimes de Mazama gouazoubira estudados, o nervo isquiático teve sua origem a partir dos ramos ventrais espinais de L6 e S1, podendo ou não ter a contribuição de S2. Na sua distribuição originam-se o nervo glúteo caudal, o nervo cutâneo femoral caudal e ramos musculares, que, conjuntamente inervam os músculos glúteo médio, glúteo profundo, gl

  18. Efek Pemberian Asam Alfa Lipoat untuk Mencegah Lesi Aterosklerosis Aorta Abdominal pada Tikus Diabetes Mellitus Tipe 2

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    Ismawati ismawati

    2018-01-01

    Full Text Available Efek asam lipoat terhadap komplikasi diabetes mellitus telah banyak diteliti. Efek protektif asam lipoat (ALA terhadap aterosklerosis pada diabetes mellitus masih perlu diteliti. Penelitian ini bertujuan untuk men­getahui pencegahan lesi aterosklerosis oleh asam alfa lipoat pada tikus diabetes mellitus (DM tipe 2. Se­banyak 21 ekor tikus wistar jantan yang dibagi menjadi 3 kelompok; kelompok kontrol, kelompok DM dan kelompok DM +ALA. Induksi DM tipe 2 dilakukan dengan pemberian streptozotocin (50 mg/kg diikuti oleh nikotinamide (110 mg/kg dosis tunggal intraperitoneal. Asam lipoat diberikan peroral (60 mg/kg selama 3 minggu setelah hewan coba terdiagnosis DM. Penelitian yang merupakan penelitian eksperimental den­gan desain post test only with control ini dilakukan di Laboratorium Biokimia Fakultas Kedokteran Univer­sitas Riau bulan Juni - Oktober 2016. Hasil penelitian memperlihatkan skor aterosklerosis pada kelompok DM+ALA lebih rendah dibandingkan kelompok DM dan perbedaan ini bermakna secara statistik. Asam lipoat dapat mencegah pembentukan lesi aterosklerosis pada tikus DM tipe 2.   The Effect of Alpha Lipoic Acid in Preventing Atherosclerosis Lesion on the Abdominal Aorta of Diabetes Mellitus Type 2 Rats   AbstractVarious studies have studied the clinical use of alpha-lipoic acid (ALA for treating diabetic complica­tions. The protective effect of lipoic acid in atherosclerosis induced by diabetes mellitus type 2 (DM type 2 still needs further study. This study was aimed to investigate the protective effect of ALA in atherosclerosis induced by DM type 2. Twenty one rats were divided into 3 groups: control, DM−treated and DM+ALA-treated group. Type-2 diabetes was induced by intraperitoneal injection of streptozotocin (50 mg/kg followed by nicotinamide (110 mg/kg. ALA was administered orally at a dose of 60 mg/kg body weight/day throughout the feeding period for three weeks. This study was an experimental study with post-test only

  19. Detección molecular del virus papiloma humano de alto riesgo oncogénico en muestras cervicales. Laboratorio Central de Salud Pública. Primeros Resultados

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    Maria Liz Bobadilla

    2015-04-01

    Full Text Available El cáncer de cuello uterino es la primera causa de muerte por cáncer en mujeres en países en vías de desarrollo, con una tasa de incidencia de 34,2 por 100.000 mujeres y de mortalidad de 15,7 por 100.000 mujeres en Paraguay. La sensibilidad de la citología está entre 30-60%, mientras que la de la detección molecular del Virus Papiloma Humano (VPH en muestras cervicales, es mayor al 90% para detectar neoplasia intraepitelial cervical de grado 2 (CIN II o más. El objetivo de este trabajo fue describir la frecuencia de detección de VPH de alto riesgo (AR y su distribución por edad en mujeres que concurrieron al Hospital San Pablo, de mayo a agosto de 2.013. Se estudiaron 170 muestras cervicales de pacientes que accedieron a participar firmando un consentimiento informado. Se utilizó el sistema Cobas 4800 HPV Test (Roche que detecta los VPH-AR 16 y 18, y un pool de 10 VPH-AR (31,33,35,39,45,51,52,56,58,59 y dos de “probable” alto riesgo (66,68. La frecuencia de infección por VPH-AR fue del 16%, la infección decrecía con la edad y el mayor número de casos apareció en mujeres menores de 30 años. El VPH-16 fue encontrado en todos los grupos de edades. Este es el primer reporte de la detección de ADN de VPH-AR en el LCSP, y se muestra que la prevención y control del cáncer cérvico-uterino es una prioridad de salud pública en el país por la gran carga de la enfermedad evidenciada por su alta incidencia y mortalidad.

  20. KAMUS BAHASA ARAB – INDONESIA ONLINE DENGAN PEMECAHAN SUKU KATA MENGGUNAKAN METODE PARSING

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    Anny Yuniarti

    2004-01-01

    Full Text Available Normal 0 false false false IN X-NONE X-NONE MicrosoftInternetExplorer4 /* Style Definitions */ table.MsoNormalTable {mso-style-name:"Table Normal"; mso-tstyle-rowband-size:0; mso-tstyle-colband-size:0; mso-style-noshow:yes; mso-style-priority:99; mso-style-qformat:yes; mso-style-parent:""; mso-padding-alt:0cm 5.4pt 0cm 5.4pt; mso-para-margin:0cm; mso-para-margin-bottom:.0001pt; mso-pagination:widow-orphan; font-size:11.0pt; font-family:"Calibri","sans-serif"; mso-ascii-font-family:Calibri; mso-ascii-theme-font:minor-latin; mso-fareast-font-family:"Times New Roman"; mso-fareast-theme-font:minor-fareast; mso-hansi-font-family:Calibri; mso-hansi-theme-font:minor-latin; mso-bidi-font-family:"Times New Roman"; mso-bidi-theme-font:minor-bidi;} Kebutuhan umat Islam akan fasilitas penunjang belajar bahasa Arab di Indonesia masih belum terpenuhi dengan optimal. Kamus bahasa Arab yang beredar di pasaran sulit dipahami karena minimnya pengetahuan tentang ilmu tata bahasa Arab di kalangan umat Islam. Pada penelitian ini dikembangkan sebuah perangkat lunak yang berfungsi menerjemahkan kata berbahasa Arab dengan metode parsing sehingga dapat mencakup kata-kata yang telah mengalami perubahan bentuk dari bentuk dasarnya. Karena kata bahasa Arab memiliki turunan kata yang jumlahnya cukup besar, dan supaya kamus efisien, maka tidak semua turunan kata disimpan dalam basisdata. Oleh sebab itu diperlukan suatu cara untuk mengenali pola kata, dan cara mengetahui bentuk dasar suatu kata. Keseluruhan perangkat lunak ini diimplementasikan berbasis web sehingga memudahkan pengaksesan pengguna. Dan pengguna tidak memerlukan proses instalasi perangkat lunak atau sistem operasi tertentu. Pembuatan perangkat lunak ini didahului dengan perancangan proses dan perancangan interface. Kemudian rancangan tersebut diimplementasikan menjadi sebuah perangkat lunak yang siap untuk dipakai. Perangkat lunak yang sudah jadi tersebut telah diuji coba sesuai dengan spesifikasi kebutuhan

  1. Pengembangan Instrumen Tes Keterampilan Pemecahan Masalah pada Materi Getaran, Gelombang, dan Bunyi

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    Syarif Rokhmat Hidayat

    2017-12-01

    , dan kesimpulan logis. Penelitian ini menggunakan metode penelitian dan pengembangan model 4D (define, design, develop, and disseminate. Sebanyak lima belas soal dibuat berdasarkan lima indikator keterampilan pemecahan masalah yang dikelompokkan menjadi tiga pokok soal materi getaran, gelombang, dan bunyi. Hasil pengembangan menunjukkan keseluruhan item tes bersifat valid dengan menggunakan uji koefisien korelasi momen Pearson. Uji alpha cronbach pada instrumen tes menunjukkan bahwa tingkat reliabel instrumen tes adalah 0,88 dengan kriteria reliabel tinggi. Berdasarkan hasil penilaian ahli dan uji coba pada beberapa sampel, instrumen tes yang telah dikembangkan dapat digunakan untuk mengukur keterampilan pemecahan masalah siswa pada materi getaran, gelombang, dan bunyi. Kata-kata Kunci: keterampilan pemecahan masalah; instrumen tes keterampilan pemecahan masalah; materi getaran, gelombang, dan bunyi.

  2. Analytical verification and quality assessment of the Tosoh HLC-723GX HbA1c analyzer

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    Marko Ris

    2017-04-01

    Full Text Available Objectives: Ion-exchange high-performance liquid chromatography (IE-HPLC has long been used as a reproducible and versatile analytical tool for HbA1c measurement.In this study, we performed analytical verification and quality assessment of the recently introduced small IE-HPLC Tosoh HLC-723GX HbA1c analyzer, and a comparison of results to immunoassay (IA and capillary electrophoresis (CE. Design and methods: The total imprecision of Tosoh HLC-723GX was verified according to CLSI EP15-A2 protocol using commercial control materials (C-QC and pooled human whole blood samples (HWB. The Sigma metric was used for the evaluation of quality targets. HbA1c results were compared to automated CE (MiniCap Flex Piercing, Sebia, France and IA (Tina-quant HbA1c Gen 2, Cobas Integra 400+, Roche Diagnostics, USA procedures. Results: The total imprecision of Tosoh HLC-723GX-HbA1c for IFCC(mmol/mol and NGSP(% units was: 1.91/1.25% (HbA1c=31 mmol/mol/5.0% and 0.51/0.63% (HbA1c=84 mmol/mol/9.8% for C-QC, and 0.39/0.2% (HbA1c=47 mmol/mol/6.5% and 0.77/0.46% (HbA1c=94 mmol/mol/10.8% in HWB samples, respectively. Bland-Altman analysis did not reveal any deviation of the results between Tosoh HLC-723GX and CE: mean difference 0.0% (95%CI: −0.02927 to 0.02653%, while the mean HbA1c difference against IA was −0.07% (95%CI: −0.1039 to −0.02765. At the selected HbA1c clinical decision level (48 mmol/mol/6,5%, six sigma analysis gave σ value of 3.91, within a desirable classification of performance. Conclusion: The analytical performance of the Tosoh HLC-723GX complies with the rigorous quality criteria for clinical use of HbA1c, with the results comparable to the CE procedure. Tosoh HLC-723GX provides a plausible analytical choice for reliable HbA1c measurement in low-volume laboratories. Keywords: HbA1c, Quality targets, Six sigma, Tosoh HLC-723GX analyzer

  3. PENGEMBANGAN MULTIMEDIA PEMBELAJARAN PRAKTIK INDIVIDU INSTRUMEN POKOK DASAR SISWA SMK DI BIDANG KEAHLIAN KARAWITAN

    Directory of Open Access Journals (Sweden)

    Ismalik Perwira Admadja

    2016-08-01

    Full Text Available Penelitian ini bertujuan untuk: (1 menghasilkan multimedia pembelajaran pada mata pelajaran praktik individu instrumen pokok dasar, (2 mengetahui kelayakan multimedia pembelajaran pada mata pelajaran praktik individu instrumen pokok dasar, dan (3 mengetahui peningkatan hasil belajar siswa menggunakan multimedia pembelajaran pada mata pelajaran praktik individu instrumen pokok dasar. Metode penelitian yang digunakan adalah metode penelitian dan pengembangan dengan desain model pengembangan Stephen M. Alessi dan Stanley R. Trollip. Langkah-langkah pengembangannya yaitu: (1 perencanaan; (2 desain; dan (3 pengembangan. Teknik analisis data untuk uji coba produk menggunakan statistik deskriptif. Hasil penelitian menunjukkan bahwa: (1 ditinjau dari aspek media dinilai “Sangat Baik” dengan skor 4,27 oleh ahli media;(2 ditinjau dari aspek materi dinilai “Sangat Baik” dengan skor 4,47 oleh ahli materi; (3 ditinjau dari aspek penggunaan dinilai “Sangat Baik” dengan skor 4,23 oleh siswa; (4 peningkatan hasil belajar siswa menunjukkan kenaikan rerata skor siswa kelas yang menggunakan multimedia sebesar 31,53 sedangkan kelas yang tidak menggunakan multimedia meningkat sebesar 20,11. Kata kunci: pengembangan, pembelajaran, multimedia pembelajaran, kelayakan. DEVELOPING LEARNING MULTIMEDIA OF INDIVIDUAL PRACTICE IN FUNDAMENTAL MUSIC INSTRUMENT FOR SMK STUDENTS IN THE EXPERTISE OF KARAWITAN Abstract The purposes of this research were: (1 to produce multimedia learning on the subject of individual practice in fundamental music instrument; (2 to determine the appropriateness of the learning multimedia in the subject of individual practice in fundamental music instrument; and (3 to determine the improvement in the students’ learning outcomes from the use of multimedia in teaching the subject of individual practice in fundamental music instrument.This research was a research and development, with the development model design by Alessi and Trollip. The

  4. Serum lactate levels in infants exposed peripartum to antiretroviral agents to prevent mother-to-child transmission of HIV: Agence Nationale de Recherches Sur le SIDA et les Hépatites Virales 1209 study, Abidjan, Ivory Coast

    Science.gov (United States)

    Ekouevi, Didier Koumavi; Touré, Ramata; Becquet, Renaud; Viho, Ida; Sakarovitch, Charlotte; Rouet, François; Towne-Gold, Besigin; Fassinou, Patricia; Leroy, Valériane; Blanche, Stéphane; Dabis, François

    2006-01-01

    Background Mitochondrial toxicity was described in infants exposed to long-term antiretroviral regimens (ARVs) containing nucleoside analogues for the prevention of mother-to-child transmission of HIV (PMTCT). We measured the serum lactate levels in children born to HIV-1 infected (HIV+) African women receiving short-term ARV PMTCT regimens. Methods A prospective study was conducted in women-child pairs from the third trimester of pregnancy to three months of life. The exposed group was formed by children exposed in utero to nucleoside analogue ARVs, zidovudine (ZDV) or ZDV + lamivudine (3TC) from 32–36 weeks of amenorrhea until delivery. All these women received nevirapine single-dose (NVPsd) at the beginning of labor. The children received ZDV during the first 7 days of life and a NVPsd at day 3. The control group was formed by infants born to HIV+ women who had received NVPsd only and not exposed to nucleoside analogue ARVs. Serum lactate levels were measured at 4, 6 and 12 weeks of life by Cobas Integra 400™. Results A total of 836 blood samples from 338 infants were collected (262 exposed and 76 controls). Median lactacidemia was 1.8 mmol/l, Interquartile Range [1.2–2.7 mmol/l]). Overall serum lactate levels ≥2.5 mmol/l, defining hyperlactatemia were observed in 39 of the 292 infants who had at least two serum lactate measurements, 13.4%, 95% confidence Interval [9.6–17.8%]. The three-month period prevalence of hyperlactatemia did not differ between the exposed group (13.1%) and the control group (14.3%) (p=0.84). All serum lactate levels returned to normal values in all subsequent samples No case of symptomatic hyperlactatemia was detected during the study period. Conclusion Increased lactate levels were identified equally in infants whose mother received a short-term of nucleoside analogues or NVPsd for PMTCT. Although not rare, hyperlactatemia was not related to short-term exposure to nucleoside analogue ARVs PMID:16950945

  5. PENGEMBANGAN MODEL PEMBELAJARAN BERBASIS KOMPETENSI BIDANG KELISTRIKAN DI SEKOLAH MENENGAH KEJURUAN

    Directory of Open Access Journals (Sweden)

    Riana T. Mangesa Dyah D. Andayani

    2015-12-01

    Full Text Available Abstrak: Tujuan penelitian adalah mengembangkan model pembelajaran dan perangkat pembelajaran berbasis kompetensi terintegrasi pendidikan karakter di SMK. Penelitian ini termasuk jenis Research & Development yang mengacu tahapan Borg dan Gall (1983, yaitu yang terdiri atas analisis kebutuhan, perancangan pengembangan, validasi ahli dan revisi, uji coba, dan tahap implementasi. Data berupa data kuantitatif dan kualitatif yang diperoleh lewat angket. Teknik analisis data yang digunakan adalah statistik deskriptif dan statistik nonparametrik, yaitu Kruskall Wallis yang penghitungannya memakai SPSS. Hasil penelitian berupa produk pengembangan perangkat pembelajaran bidang kelistrikan yang berupa modul, media, dan penilaian pencapaian kompetensi (rubrik penyekoran. Hasil pengembangan memenuhi tuntutan validitas, pencapaian kompetensi dalam proses pembelajaran yang dipergunakan secara keseluruhan tinggi, guru memberi skor penilaian melalui pencapai kompetensi sesuai kriteria dalam rubrik penyekoran terhadap ketiga aspek kompetensi, yaitu aspek kognitif, afektif, dan psikomotorik. Penilaian keefektifan pembelajaran secara menyeluruh menunjukkan bahwa siswa dan guru memberikan tanggapan secara aktif dan mencapai tujuan pembelajaran. Kata Kunci: pengembangan model penilaian, pembelajaran berbasis kompetensi, rubrik penye- koran, SMK DEVELOPING A COMPETENCE-BASED INSTRUCTIONAL MODEL IN THE ELECTRICAL FIELD IN VOCATIONAL SCHOOLS Abstract: This study was aimed to develop a competence-based instructional model integrated with character education in vocational schools. This study belonged to the Research and Development study using the stages as developed by Borg and Gall (1983: a needs analysis, developmental design, expert validation and revision, try-out, and implementation stages. The data were in the form of quantitative and qualitative data obtained through questionnaires. The data were analyzed using the descriptive statistics and non

  6. 25-hydroxy vitamin D levels, vitamin D deficiency and insufficiency in patients with bone and musculoskeletal disorders

    Directory of Open Access Journals (Sweden)

    V.V. Povoroznyuk

    2017-08-01

    Full Text Available Background. Vitamin D deficiency is prevalent in all the world countries. Recent studies show the correlation between vitamin D deficiency and musculoskeletal disorders. The purpose of this study is to examine vitamin D deficiency and insufficiency prevalence in patients of various ages, who have musculoskeletal disorders, and to reveal the influence of seasonal factors on these conditions. Materials and methods. 3460 patients of the Ukrainian Scientific Medical Center of Osteoporosis Problems, aged 1 to 92 years, who were referred by other specialists to the center for bone state evaluation, were examined. A majority of the patients presented with osteoporosis and its complications, spinal osteochondrosis, knee and hip osteoarthritis (mean age — 52.90 ± 21.10 years. Most of the patients were women (83.5 %. 25(ОНD and parathyroid hormone analyses were performed by means of electrochemiluminescent method (Elecsys 2010 analyzer, Roche Diagnostics, Germany and cobas test-systems. Statistica 6.0 software package (Copyright StatSoft, Inc., 1984–2001 was also used. Results. Among the patients with musculoskeletal pathology, the highest 25(ОНD level was noted in the age group of 1–9 years and the lowest — in the age group of 80 and over. Age negatively influenced 25(ОНD values. Prevalence of vitamin D deficiency among the patients with musculoskeletal pathology was 37.3 %, vitamin D insufficiency — 30.6 %; 32.1 % of patients had normal vitamin D status. Normal 25(OHD level was found in 38.0 % of children, 33.2 % of adults and in 29.6 % of elderly patients. Month of blood sampling had a significant influence on 25(ОНD content (F = 7.49; p < 0.001. The highest significant differences in 25(ОНD levels during the summer vs. winter months were observed in the age groups of 10–19 (18.2 %, 40–49 (17.3 %, 30–39 (16.2 % и 1–9 years (16.1 %. There were no significant seasonal differences observed in the elderly patients (60

  7. Study of the inhibition effect of ethanolic extract of mangosteen pericarp on atherogenesis in hypercholesterolemic rat

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    Titin Andri Wihastuti

    2015-10-01

    Full Text Available Objective: To investigate the effect of ethanolic extract of mangosteen pericarp (EEMP through lipid profile, H2O2, nuclear factor-kappa B (NF-κB, inducible nitric oxide synthase (iNOS and endothelial nitric oxide synthase (eNOS measurement in hypercholesterolemic rat. Methods: A total of 20 rats were used in true laboratory experiment which were divided into 5 groups (n = 4 using posttest-only design. There were a normal diet group, a hypercholesterol diet (HCD group, a group that was given HCD with EEMP 200 mg/kg body weight, a group that was given HCD with 400 mg/kg body weight and a group that was given HCD with 800 mg/kg body weight. The lipid profile was measured using Cobas Mira. On the other hand, H2O2 was analysed using colorimetric hydrogen peroxide kit. Double staining immunofluorescence was given to observe NF-κB, iNOS and eNOS by using confocal laser scanning microscopy. The result was analyzed quantitatively using Olymphus Fluoview software (version 1.7a. Results: Lipid profile was significantly worsened in HCD and H2O2 level and expressions of NF-κB, iNOS and eNOS were also increased in HCD. EEMP 200 mg/kg body weight generally did not show significant results. However, high density lipoprotein level was affected by EEMP 400 mg/kg body weight, but not for other lipid profiles which reduced H2O2 level and NF-κB, iNOS and eNOS expressions significantly. EEMP 800 mg/kg body weight had been shown to be the most effective dose to improve lipid profile, decrease level of H2O2 and the expression of NF-κB and iNOS and maintain expression of eNOS. Conclusions: EEMP is an anti-inflammatory and antioxidant agent to inhibit atherogenesis in hypercholesterolemic rat.

  8. Point-Counterpoint: Cervical Cancer Screening Should Be Done by Primary Human Papillomavirus Testing with Genotyping and Reflex Cytology for Women over the Age of 25 Years

    Science.gov (United States)

    Zhao, Chengquan

    2015-01-01

    Screening for cervical cancer with cytology testing has been very effective in reducing cervical cancer in the United States. For decades, the approach was an annual Pap test. In 2000, the Hybrid Capture 2 human papillomavirus (HPV) test was approved by the U.S. Food and Drug Administration (FDA) for screening women who have atypical squamous cells of underdetermined significance (ASCUS) detected by Pap test to determine the need for colposcopy. In 2003, the FDA approved expanding the use of the test to include screening performed in conjunction with a Pap test for women over the age of 30 years, referred to as “cotesting.” Cotesting allows women to extend the testing interval to 3 years if both tests have negative results. In April of 2014, the FDA approved the use of an HPV test (the cobas HPV test) for primary cervical cancer screening for women over the age of 25 years, without the need for a concomitant Pap test. The approval recommended either colposcopy or a Pap test for patients with specific high-risk HPV types detected by the HPV test. This was based on the results of the ATHENA trial, which included more than 40,000 women. Reaction to this decision has been mixed. Supporters point to the fact that the primary-screening algorithm found more disease (cervical intraepithelial neoplasia 3 or worse [CIN3+]) and also found it earlier than did cytology or cotesting. Moreover, the positive predictive value and positive-likelihood ratio of the primary-screening algorithm were higher than those of cytology. Opponents of the decision prefer cotesting, as this approach detects more disease than the HPV t