Co-ordinate activation of lipogenic enzymes in hepatocellular carcinoma.

Science.gov (United States)

Yahagi, Naoya; Shimano, Hitoshi; Hasegawa, Kiyoshi; Ohashi, Kenichi; Matsuzaka, Takashi; Najima, Yuho; Sekiya, Motohiro; Tomita, Sachiko; Okazaki, Hiroaki; Tamura, Yoshiaki; Iizuka, Yoko; Ohashi, Ken; Nagai, Ryozo; Ishibashi, Shun; Kadowaki, Takashi; Makuuchi, Masatoshi; Ohnishi, Shin; Osuga, Jun-ichi; Yamada, Nobuhiro

2005-06-01

Hepatocellular carcinoma is a very common neoplastic disease in countries where hepatitis viruses B and/or C are prevalent. Small hepatocellular carcinoma lesions detected by ultrasonography at an early stage are often hyperechoic because they are composed of well-differentiated cancer cells that are rich in triglyceride droplets. The triglyceride content of hepatocytes depends in part on the rate of lipogenesis. Key lipogenic enzymes, such as fatty acid synthase, are co-ordinately regulated at the transcriptional level. We therefore examined the mRNA expression of lipogenic enzymes in human hepatocellular carcinoma samples from 10 patients who had undergone surgical resection. All of the samples exhibited marked elevation of expression of mRNA for lipogenic enzymes, such as fatty acid synthase, acetyl-CoA carboxylase and ATP citrate lyase, compared with surrounding non-cancerous liver tissue. In contrast, the changes in mRNA expression of SREBP-1, a transcription factor that regulates a battery of lipogenic enzymes, did not show a consistent trend. In some cases where SREBP-1 was elevated, the main contributing isoform was SREBP-1c rather than SREBP-1a. Thus, lipogenic enzymes are markedly induced in hepatocellular carcinomas, and in some cases SREBP-1c is involved in this activation.

Normal co-ordinate analysis of 1, 8-dibromooctane

Science.gov (United States)

Singh, Devinder; Jaggi, Neena; Singh, Nafa

2010-02-01

The organic compound 1,8-dibromooctane (1,8-DBO) exists in liquid phase at ambient temperatures and has versatile synthetic applications. In its liquid phase 1,8-DBO has been expected to exist in four most probable conformations, with all its carbon atoms in the same plane, having symmetries C 2h , C i , C 2 and C 1 . In the present study a detailed vibrational analysis in terms of assignment of Fourier transform infrared (FT-IR) and Raman bands of this molecule using normal co-ordinate calculations has been done. A systematic set of symmetry co-ordinates has been constructed for this molecule and normal co-ordinate analysis is carried out using the computer program MOLVIB. The force-field transferred from already studied lower chain bromo-alkanes is subjected to refinement so as to fit the observed infrared and Raman frequencies with those of calculated ones. The potential energy distribution (PED) has also been calculated for each mode of vibration of the molecule for the assumed conformations.

INFCE technical co-ordinating committee documents

Energy Technology Data Exchange (ETDEWEB)

None

1980-07-01

A collection of the documents covering the period December 1977 through February 1980 submitted to or generated by the Technical Co-ordinating Comittee is presented. The documents cover primarily the organizational aspects of INFCE, but conclusions from the various Working Groups are summarized.

INFCE technical co-ordinating committee documents

International Nuclear Information System (INIS)

A collection of the documents covering the period December 1977 through February 1980 submitted to or generated by the Technical Co-ordinating Comittee is presented. The documents cover primarily the organizational aspects of INFCE, but conclusions from the various Working Trays are summarized

UK Natural Analogue Co-Ordinating Group: first annual progress report

International Nuclear Information System (INIS)

Hooker, P.J.; Chapman, N.A.

1987-11-01

The British Geological Survey is reponsible for co-ordinating the Department of the Environment's programme of natural analogue studies of radionuclide migration, a research programme that involved both UK and overseas sites. Co-ordination is achieved through the UK Natural Analogue Co-ordinating Group (NACG) which was established in October 1986. It has met three times to date and its function is to ensure that the different research projects have an integrated purpose aimed at improving and applying our understanding of natural geochemical processes in a way that will increase our confidence in long-term modelling predictions. Improved modelling prediction of radionuclide transport in the geosphere will directly benefit the performance and safety assessments of proposed radioactive waste repositories. (author)

Dominant supply chain co-ordination strategies in the Dutch aerospace industry

NARCIS (Netherlands)

Voordijk, Johannes T.; Meijboom, Bert

2005-01-01

Purpose – Firms in the aerospace industry face considerable pressure to improve co-ordination in their supply chains. The major question of the present study is what supply chain co-ordination strategies are dominant in the Dutch aerospace industry given the market environment of this industry?

Co-expression networks reveal the tissue-specific regulation of transcription and splicing.

Science.gov (United States)

Saha, Ashis; Kim, Yungil; Gewirtz, Ariel D H; Jo, Brian; Gao, Chuan; McDowell, Ian C; Engelhardt, Barbara E; Battle, Alexis

2017-11-01

Gene co-expression networks capture biologically important patterns in gene expression data, enabling functional analyses of genes, discovery of biomarkers, and interpretation of genetic variants. Most network analyses to date have been limited to assessing correlation between total gene expression levels in a single tissue or small sets of tissues. Here, we built networks that additionally capture the regulation of relative isoform abundance and splicing, along with tissue-specific connections unique to each of a diverse set of tissues. We used the Genotype-Tissue Expression (GTEx) project v6 RNA sequencing data across 50 tissues and 449 individuals. First, we developed a framework called Transcriptome-Wide Networks (TWNs) for combining total expression and relative isoform levels into a single sparse network, capturing the interplay between the regulation of splicing and transcription. We built TWNs for 16 tissues and found that hubs in these networks were strongly enriched for splicing and RNA binding genes, demonstrating their utility in unraveling regulation of splicing in the human transcriptome. Next, we used a Bayesian biclustering model that identifies network edges unique to a single tissue to reconstruct Tissue-Specific Networks (TSNs) for 26 distinct tissues and 10 groups of related tissues. Finally, we found genetic variants associated with pairs of adjacent nodes in our networks, supporting the estimated network structures and identifying 20 genetic variants with distant regulatory impact on transcription and splicing. Our networks provide an improved understanding of the complex relationships of the human transcriptome across tissues. © 2017 Saha et al.; Published by Cold Spring Harbor Laboratory Press.

Genetic variation shapes protein networks mainly through non-transcriptional mechanisms.

Directory of Open Access Journals (Sweden)

Eric J Foss

2011-09-01

Full Text Available Networks of co-regulated transcripts in genetically diverse populations have been studied extensively, but little is known about the degree to which these networks cause similar co-variation at the protein level. We quantified 354 proteins in a genetically diverse population of yeast segregants, which allowed for the first time construction of a coherent protein co-variation matrix. We identified tightly co-regulated groups of 36 and 93 proteins that were made up predominantly of genes involved in ribosome biogenesis and amino acid metabolism, respectively. Even though the ribosomal genes were tightly co-regulated at both the protein and transcript levels, genetic regulation of proteins was entirely distinct from that of transcripts, and almost no genes in this network showed a significant correlation between protein and transcript levels. This result calls into question the widely held belief that in yeast, as opposed to higher eukaryotes, ribosomal protein levels are regulated primarily by regulating transcript levels. Furthermore, although genetic regulation of the amino acid network was more similar for proteins and transcripts, regression analysis demonstrated that even here, proteins vary predominantly as a result of non-transcriptional variation. We also found that cis regulation, which is common in the transcriptome, is rare at the level of the proteome. We conclude that most inter-individual variation in levels of these particular high abundance proteins in this genetically diverse population is not caused by variation of their underlying transcripts.

Uncovering packaging features of co-regulated modules based on human protein interaction and transcriptional regulatory networks

Directory of Open Access Journals (Sweden)

He Weiming

2010-07-01

Full Text Available Abstract Background Network co-regulated modules are believed to have the functionality of packaging multiple biological entities, and can thus be assumed to coordinate many biological functions in their network neighbouring regions. Results Here, we weighted edges of a human protein interaction network and a transcriptional regulatory network to construct an integrated network, and introduce a probabilistic model and a bipartite graph framework to exploit human co-regulated modules and uncover their specific features in packaging different biological entities (genes, protein complexes or metabolic pathways. Finally, we identified 96 human co-regulated modules based on this method, and evaluate its effectiveness by comparing it with four other methods. Conclusions Dysfunctions in co-regulated interactions often occur in the development of cancer. Therefore, we focussed on an example co-regulated module and found that it could integrate a number of cancer-related genes. This was extended to causal dysfunctions of some complexes maintained by several physically interacting proteins, thus coordinating several metabolic pathways that directly underlie cancer.

IAEA co-ordinated technical support programme to the NIS

International Nuclear Information System (INIS)

Olsen, R.; Murakami, K.; Blacker, C.; Sharma, S.K.

1999-01-01

With most Newly Independent States (NIS) of the former Soviet Union becoming parties to the Non-Proliferation Treaty as Non-Nuclear Weapon States, there has been an acute need in these states for considerable assistance for the establishment of the necessary structure and resources to ensure that their commitments to non-proliferation are fully implemented in a timely manner. A number of IAEA Member States have offered and are now providing assistance to the NIS on a bilateral level to set up an appropriate State System of Accounting and Control (SSAC) which includes Import/Export Control and Physical Protection of Nuclear Material in each state. The IAEA and these Member States established the Co-ordinated Technical Support Programme (CTSP) to ensure that the support given to the NIS was done in a co-ordinated and transparent manner and to avoid duplication of effort. The IAEA has played a coordinating role for the past 5 years by helping to identify detailed needs in individual States, by providing a platform for Member States to identify areas where they could provide the optimum support, and in developing and preparing the Co-ordinated Technical Support Plans. The IAEA organises annual meetings in Vienna attended by all donor and recipient countries to review the focus and implementation status of the co-ordinated technical support activities. A position statement is made by each donor and recipient country, and views and experiences are exchanged. The contents of the CTSPs and the role of the Agency in monitoring the progress of the individual tasks are reviewed in this paper. A summary comparing the implementation status of the Programme by each country is presented. (author)

Report of the second research co-ordination meeting on the co-ordinated research programme: rapid instrumental and separation methods for monitoring radionuclides in food and environmental samples

International Nuclear Information System (INIS)

1992-10-01

The purpose of this Second Research Co-ordinated Meeting (12-16 August 1991) on Rapid Instrumental and Separation Methods for Monitoring Radionuclides in Food and Environmental Samples is to discuss the progress of the programmes since the First Research Co-ordination Meeting, discuss how to validate the methodologies developed (e.g. reference samples, intercomparisons), and outline a schedule for CRP completion by the end of 1992. Radioactive contamination of the environment after a nuclear accident, such as had occurred at Chernobyl, is of serious concern to government officials and members of the general public. In 1990/1991 the Agency was asked to organize the International Chernobyl Project to assess the situation in the USSR. A network of laboratories was organized to carry out the environmental assessment needed for this project. The following recommendations are based on the experience gained by many of the laboratories involved in this project. 1. Maintain a network of analytical laboratories with special skills and experience to provide assessments of radionuclide contamination in the environment in case of a radiological emergency. 2. Methodologies for assessment of contamination in the environment should take into consideration potential trajectories, radioecology, and food chain parameters. 3. Focus on areas of representative sample collection, is situ instrumental and chemical analysis, as well as advanced streamlined laboratory analyses which will facilitate the timeline of an assessment. 4. Conduct intercomparison and testing of technologies, employing standard reference materials and procedures, and field measurements at significantly contaminated area. 5. Conduct training of Member State laboratory personnel through fellowships, special courses, and workshops. 5 refs

Co-ordinated research programme on applications of stable isotope tracers in human nutrition research

International Nuclear Information System (INIS)

1992-01-01

This document provides a very brief report on the final Research Co-ordination Meeting of this Co-ordinated Research Project (CRP): the final report on the CRP will be published by the IAEA in the IAEA-TECDOC series. The present document contains a detailed proposal for a new Co-ordinated Research Programme on ''Stable Isotope Tracer Techniques for Studies on Protein-Energy Interactions'', and a brief series of notes on stable isotopic methods for investigating protein and amino-acid metabolism in man. Refs

About local fractional three-dimensional compressible Navier-Stokes equations in Cantor-type cylindrical co-ordinate system

Directory of Open Access Journals (Sweden)

Gao Guo-Ping

2016-01-01

Full Text Available In this article, we investigate the local fractional 3-D compressible Navier-Stokes equation via local fractional derivative. We use the Cantor-type cylindrical co-ordinate method to transfer 3-D compressible Navier-Stokes equation from the Cantorian co-ordinate system to the Cantor-type cylindrical co-ordinate system.

Care co-ordination for older people in the third sector: scoping the evidence.

Science.gov (United States)

Abendstern, Michele; Hughes, Jane; Jasper, Rowan; Sutcliffe, Caroline; Challis, David

2018-05-01

The third sector has played a significant role internationally in the delivery of adult social care services for many years. Its contribution to care co-ordination activities for older people, however, in England and elsewhere, is relatively unknown. A scoping review was therefore conducted to ascertain the character of the literature, the nature and extent of third sector care co-ordination activity, and to identify evidence gaps. It was undertaken between autumn 2013 and summer 2014 and updated with additional searches in 2016. Electronic and manual searches of international literature using distinct terms for different approaches to care co-ordination were undertaken. From a total of 835 papers, 26 met inclusion criteria. Data were organised in relation to care co-ordination approaches, types of third sector organisation and care recipients. Papers were predominantly from the UK and published this century. Key findings included that: a minority of literature focused specifically on older people and that those doing so described only one care co-ordination approach; third sector services tended to be associated with independence and person-centred practice; and working with the statutory sector, a prerequisite of care co-ordination, was challenging and required a range of features to be in place to support effective partnerships. Strengths and weaknesses of care co-ordination practice in the third sector according to key stakeholder groups were also highlighted. Areas for future research included the need for: a specific focus on older people's experiences; an investigation of workforce issues; detailed examination of third sector practices, outcomes and costs; interactions with the statutory sector; and an examination of quality assurance systems and their appropriateness to third sector practice. The main implication of the findings is a need to nurture variety within the third sector in order to provide older people and other adults with the range of service

Low pH induces co-ordinate regulation of gene expression in oesophageal cells.

Science.gov (United States)

Duggan, Shane P; Gallagher, William M; Fox, Edward J P; Abdel-Latif, Mohammed M; Reynolds, John V; Kelleher, Dermot

2006-02-01

The development of gastro-oesophageal reflux disease (GORD) is known to be a causative risk factor in the evolution of adenocarcinoma of the oesophagus. The major component of this reflux is gastric acid. However, the impact of low pH on gene expression has not been extensively studied in oesophageal cells. This study utilizes a transcriptomic and bioinformatic approach to assess regulation of gene expression in response to low pH. In more detail, oesophageal adenocarcinoma cell lines were exposed to a range of pH environments. Affymetrix microarrays were used for gene-expression analysis and results were validated using cycle limitation and real-time RT-PCR analysis, as well as northern and western blotting. Comparative promoter transcription factor binding site (TFBS) analysis (MatInspector) of hierarchically clustered gene-expression data was employed to identify the elements which may co-ordinately regulate individual gene clusters. Initial experiments demonstrated maximal induction of EGR1 gene expression at pH 6.5. Subsequent array experimentation revealed significant induction of gene expression from such functional categories as DNA damage response (EGR1-4, ATF3) and cell-cycle control (GADD34, GADD45, p57). Changes in expression of EGR1, EGR3, ATF3, MKP-1, FOSB, CTGF and CYR61 were verified in separate experiments and in a variety of oesophageal cell lines. TFBS analysis of promoters identified transcription factors that may co-ordinately regulate gene-expression clusters, Cluster 1: Oct-1, AP4R; Cluster 2: NF-kB, EGRF; Cluster 3: IKRS, AP-1F. Low pH has the ability to induce genes and pathways which can provide an environment suitable for the progression of malignancy. Further functional analysis of the genes and clusters identified in this low pH study is likely to lead to new insights into the pathogenesis and therapeutics of GORD and oesophageal cancer.

ITER co-ordinated technical activities

International Nuclear Information System (INIS)

2001-01-01

As agreed upon between the ITER Engineering Design Activities (EDA) Parties 'Co-ordinated Technical Activities' (CTA) means technical activities which are deemed necessary to maintain the integrity of the international project, so as to prepare for the ITER joint implementation. The scope of these activities includes design adaptation to the specific site conditions, safety analysis and licensing preparation that are based on specific site offers, evaluation of cost and construction schedule, preparation of procurement documents and other issues raised by the Parties collectively, whilst assuring the coherence of the ITER project including design control

Co-ordinated research programme applications of stable isotope tracers in human nutrition research

International Nuclear Information System (INIS)

1992-01-01

The objective of this Co-ordinated Research Programme is to help establish competence in the use of stable isotope techniques, particularly in developing countries. This report summarizes the discussions that took, place during the Second Research Co-ordination Meeting, held in Bangalore in November 1990. Working papers presented by the participants are included as annexes. Refs, figs and tabs

Report on the consultants` meeting on co-ordination of the nuclear reaction data centers (technical aspects)

Energy Technology Data Exchange (ETDEWEB)

Schwerer, O; Wienke, H [eds.

1997-10-01

The report summarizes the co-ordination meeting of the network of Nuclear Reaction Data Centres organized by the IAEA in 1997. The meeting was attended by technical staff from ten member centres of the network (representing USA, Russia, China, Japan, Hungary, OECD-NEA and IAEA) to discuss technical matters of the nuclear data compilation and exchange by means of the jointly operated computerized systems CINDA, EXFOR, ENDF and others. Observers from Belgium and Ukraine also attended the meeting. The document includes status reports of all centres and selected working papers. Refs, figs, tabs.

Report on the consultants' meeting on co-ordination of the nuclear reaction data centers (technical aspects)

International Nuclear Information System (INIS)

Schwerer, O.; Wienke, H.

1997-10-01

The report summarizes the co-ordination meeting of the network of Nuclear Reaction Data Centres organized by the IAEA in 1997. The meeting was attended by technical staff from ten member centres of the network (representing USA, Russia, China, Japan, Hungary, OECD-NEA and IAEA) to discuss technical matters of the nuclear data compilation and exchange by means of the jointly operated computerized systems CINDA, EXFOR, ENDF and others. Observers from Belgium and Ukraine also attended the meeting. The document includes status reports of all centres and selected working papers

Information Design for Synchronization and Co-ordination of Modern, Complex, Multi-National Operations

Science.gov (United States)

2011-06-01

1 16th ICCRTS Information design for synchronization and co-ordination of modern, complex, multi- national operations “Collective C2 in...REPORT DATE JUN 2011 2. REPORT TYPE 3. DATES COVERED 00-00-2011 to 00-00-2011 4. TITLE AND SUBTITLE Information design for synchronization and co...at 11th ICCRTS) who emphasise that information needs to be designed, not merely found or catalogued, to achieve synchronizations and co-ordinations

Information on Nea programmes on nuclear energy and civil society and their co-ordination

International Nuclear Information System (INIS)

Mays, C.; Riotte, H.

2004-01-01

At its session in May 2002, the Steering Committee for Nuclear Energy welcomed the activities that the NEA standing technical committees were carrying out in the field of nuclear energy and civil society, and agreed on the value of existing co-ordination among them. Tile Committee asked the Secretariat to prepare an information document on such co-ordination activities. With this in mind, the present room document offers an up-to-date account of relevant NEA activities and their co-ordination, pending a broader review of NEA's involvement in the area of nuclear energy and civil society, in the context of the NEA Strategic Plan at an appropriate time. (author)

On three-dimensional incompressible Navier-Stokes fluid on cantor sets in spherical Cantor type co-ordinate system

Directory of Open Access Journals (Sweden)

Meng Zhi-Jun

2016-01-01

Full Text Available This paper addresses the systems of the incompressible Navier-Stokes equations on Cantor sets without the external force involving the fractal heat-conduction problem vial local fractional derivative. The spherical Cantor type co-ordinate method is used to transfer the incompressible Navier-Stokes equation from the Cantorian co-ordinate system into the spherical Cantor type co-ordinate system.

Why Overlearned Sequences are Special: Distinct Neural Networks for Ordinal Sequences

Directory of Open Access Journals (Sweden)

Vani ePariyadath

2012-12-01

Full Text Available Several observations suggest that overlearned ordinal categories (e.g., letters, numbers, weekdays, months are processed differently than non-ordinal categories in the brain. In synesthesia, for example, anomalous perceptual experiences are most often triggered by members of ordinal categories (Rich et al., 2005; Eagleman, 2009. In semantic dementia, the processing of ordinal stimuli appears to be preserved relative to non-ordinal ones (Cappelletti et al., 2001. Moreover, ordinal stimuli often map onto unconscious spatial representations, as observed in the SNARC effect (Dehaene et al, 1993; Fias, 1996. At present, little is known about the neural representation of ordinal categories. Using functional neuroimaging, we show that words in ordinal categories are processed in a fronto-temporo-parietal network biased toward the right hemisphere. This differs from words in non-ordinal categories (such as names of furniture, animals, cars and fruit, which show an expected bias toward the left hemisphere. Further, we find that increased predictability of stimulus order correlates with smaller regions of BOLD activation, a phenomenon we term prediction suppression. Our results provide new insights into the processing of ordinal stimuli, and suggest a new anatomical framework for understanding the patterns seen in synesthesia, unconscious spatial representation, and semantic dementia.

An Integrated Model of Co-ordinated Community-Based Care.

Science.gov (United States)

Scharlach, Andrew E; Graham, Carrie L; Berridge, Clara

2015-08-01

Co-ordinated approaches to community-based care are a central component of current and proposed efforts to help vulnerable older adults obtain needed services and supports and reduce unnecessary use of health care resources. This study examines ElderHelp Concierge Club, an integrated community-based care model that includes comprehensive personal and environmental assessment, multilevel care co-ordination, a mix of professional and volunteer service providers, and a capitated, income-adjusted fee model. Evaluation includes a retrospective study (n = 96) of service use and perceived program impact, and a prospective study (n = 21) of changes in participant physical and social well-being and health services utilization. Over the period of this study, participants showed greater mobility, greater ability to meet household needs, greater access to health care, reduced social isolation, reduced home hazards, fewer falls, and greater perceived ability to obtain assistance needed to age in place. This study provides preliminary evidence that an integrated multilevel care co-ordination approach may be an effective and efficient model for serving vulnerable community-based elders, especially low and moderate-income elders who otherwise could not afford the cost of care. The findings suggest the need for multisite controlled studies to more rigorously evaluate program impacts and the optimal mix of various program components. © The Author 2014. Published by Oxford University Press on behalf of The Gerontological Society of America. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Co-ordinate induction of hepatic mitochondrial and peroxisomal carnitine acyltransferase synthesis by diet and drugs.

Science.gov (United States)

Brady, P S; Marine, K A; Brady, L J; Ramsay, R R

1989-01-01

The present studies examined the effect of agents that induce peroxisomal and mitochondrial beta-oxidation on hepatic mitochondrial carnitine palmitoyltransferase (CPT) and peroxisomal carnitine acyltransferase [CPTs of Ramsay (1988) Biochem. J. 249, 239-245; COT of Farrell & Bieber (1983) Arch. Biochem. Biophys. 222, 123-132 and Miyazawa, Ozasa, Osumi & Hashimoto (1983) J. Biochem. 94, 529-542]. In the first studies, high fat diets containing corn oil or fish oil were used to induce peroxisomal and mitochondrial enzymes. Rats were fed one of three diets for 4 weeks: (1) low fat, with corn oil as 11% of energy (kJ); (2) high fat, with corn oil as 45% of kJ; (3) high fat, with fish oil as 45% of kJ. At the end of 4 weeks, both mitochondrial CPT and peroxisomal CPTs exhibited increases in activity, immunoreactive protein, mRNA levels and transcription rates in livers of rats fed either high-fat diet compared to the low fat diet. Riboflavin deficiency or starvation for 48 h also increased the peroxisomal CPTs mRNA. A second set of studies used the plasticizer 2-(diethylhexyl)phthalate (DEHP), 0.5% clofibrate or 1% acetylsalicylic acid (fed for 3 weeks) to alter peroxisomal and mitochondrial fatty acid oxidation. With DEHP, the mitochondrial CPT and peroxisomal CPTs activity, immunoreactive protein, mRNA levels and and transcription rate were all increased by 3-5-fold. The peroxisomal CPTs activity, immunoreactive protein, mRNA levels and transcription rate were increased 2-3-fold by clofibrate and acetylsalicylic acid, again similar to mitochondrial CPT. The results of the combined studies using both diet and drugs to cause enzyme induction suggest that the synthesis of the carnitine acyltransferases (mitochondrial CPT and peroxisomal CPTs) may be co-ordinated with each other; however, the co-ordinate regulatory factors have not yet been identified. Images Fig. 1. Fig. 2. Fig. 3. Fig. 4. Fig. 5. PMID:2775196

Co-ordinated research activities: Annual report and statistics for 2003

International Nuclear Information System (INIS)

2004-07-01

Article III of the IAEA Statute authorises the Agency to encourage and assist research on, and development and practical application of, atomic energy for peaceful purposes throughout the world and to foster the exchange of scientific and technical information, as well as the exchange of scientists in the field of peaceful uses of atomic energy. The research supported by the Agency is within the framework of the Agency's programmes, sub-programmes and projects that are listed in the approved Programme and Budget of the Agency. These co-ordinated research activities are normally implemented through Co-ordinated Research Projects (CRPs) that bring together research institutes in both developing and developed Member States to collaborate on the research topic of interest. The Agency may also respond to proposals from institutes for participation in the research activities by awarding individual contracts not related to a CRP. A small portion of available funds is used to finance individual projects, which deal with topics covered by the Agency's scientific programme. The Agency also supports several Doctoral CRPs. This new, optional type of CRP has been designed to strengthen promotion of research on nuclear technologies in developing Member States through pair building between agreement holders and contract holders. These CRPs include a PhD training programme at the contract holders' institutions. Three doctoral CRPs are currently being carried out by the Human Health programme. Further information on the Agency's co-ordinated research activities, including current information on CRPs and programme areas supported, information on policies and procedures and the administration of the activities is contained in the Agency's website at http://www-crp.iaea.org. The co-ordinated research activities reported in this document are conducted in support of the following Agency programmes: Nuclear Power; Nuclear Fuel Cycle and Material Technologies; Analysis for Sustainable

Co-ordinated research activities: Annual report and statistics for 2003

Energy Technology Data Exchange (ETDEWEB)

NONE

2004-07-15

Article III of the IAEA Statute authorises the Agency to encourage and assist research on, and development and practical application of, atomic energy for peaceful purposes throughout the world and to foster the exchange of scientific and technical information, as well as the exchange of scientists in the field of peaceful uses of atomic energy. The research supported by the Agency is within the framework of the Agency's programmes, sub-programmes and projects that are listed in the approved Programme and Budget of the Agency. These co-ordinated research activities are normally implemented through Co-ordinated Research Projects (CRPs) that bring together research institutes in both developing and developed Member States to collaborate on the research topic of interest. The Agency may also respond to proposals from institutes for participation in the research activities by awarding individual contracts not related to a CRP. A small portion of available funds is used to finance individual projects, which deal with topics covered by the Agency's scientific programme. The Agency also supports several Doctoral CRPs. This new, optional type of CRP has been designed to strengthen promotion of research on nuclear technologies in developing Member States through pair building between agreement holders and contract holders. These CRPs include a PhD training programme at the contract holders' institutions. Three doctoral CRPs are currently being carried out by the Human Health programme. Further information on the Agency's co-ordinated research activities, including current information on CRPs and programme areas supported, information on policies and procedures and the administration of the activities is contained in the Agency's website at http://www-crp.iaea.org. The co-ordinated research activities reported in this document are conducted in support of the following Agency programmes: Nuclear Power; Nuclear Fuel Cycle and Material Technologies; Analysis for Sustainable

Transcriptional Regulatory Network Analysis of MYB Transcription Factor Family Genes in Rice

Directory of Open Access Journals (Sweden)

Shuchi eSmita

2015-12-01

Full Text Available MYB transcription factor (TF is one of the largest TF families and regulates defense responses to various stresses, hormone signaling as well as many metabolic and developmental processes in plants. Understanding these regulatory hierarchies of gene expression networks in response to developmental and environmental cues is a major challenge due to the complex interactions between the genetic elements. Correlation analyses are useful to unravel co-regulated gene pairs governing biological process as well as identification of new candidate hub genes in response to these complex processes. High throughput expression profiling data are highly useful for construction of co-expression networks. In the present study, we utilized transcriptome data for comprehensive regulatory network studies of MYB TFs by top down and guide gene approaches. More than 50% of OsMYBs were strongly correlated under fifty experimental conditions with 51 hub genes via top down approach. Further, clusters were identified using Markov Clustering (MCL. To maximize the clustering performance, parameter evaluation of the MCL inflation score (I was performed in terms of enriched GO categories by measuring F-score. Comparison of co-expressed cluster and clads analyzed from phylogenetic analysis signifies their evolutionarily conserved co-regulatory role. We utilized compendium of known interaction and biological role with Gene Ontology enrichment analysis to hypothesize function of coexpressed OsMYBs. In the other part, the transcriptional regulatory network analysis by guide gene approach revealed 40 putative targets of 26 OsMYB TF hubs with high correlation value utilizing 815 microarray data. The putative targets with MYB-binding cis-elements enrichment in their promoter region, functional co-occurrence as well as nuclear localization supports our finding. Specially, enrichment of MYB binding regions involved in drought-inducibility implying their regulatory role in drought

First IAEA research co-ordination meeting on 'Tritium inventory in fusion reactors'. Summary report

International Nuclear Information System (INIS)

Clark, R.E.H.

2003-02-01

The proceedings and conclusions of the first Research Co-ordination Meeting on 'Tritium Inventory in Fusion Reactors', held on November 4-6, 2002 at the IAEA Headquarters in Vienna are briefly described. This report includes a summary of the presentations made by the meeting participants and the specific goals set by the participants of the Co-ordinated Research Project (CRP). (author)

Pappas' scheme of correlating R6 and R4 co-ordinate transformations

International Nuclear Information System (INIS)

Teli, M.T.

1984-01-01

Pappas has suggested that R 4 co-ordinates can be connected with those in the R 6 by taking t'sub(x)=t'sub(y)=t'sub(z)=t'. Such connection is here obtained by introducing the scaling of space-time co-ordinates xsub(i), tsub(i) in all the frames by the corresponding factor c/c'sub(i) and have shown that taking of t'sub(x)=t'sub(y)=t'sub(z)=t' for this purpose is not necessary. The scaling factors get ignored after the connection

Co-ordinate regulation of Salmonella typhimurium invasion genes by environmental and regulatory factors is mediated by control of hilA expression.

Science.gov (United States)

Bajaj, V; Lucas, R L; Hwang, C; Lee, C A

1996-11-01

During infection of their hosts, salmonellae enter intestinal epithelial cells. It has been proposed that when Salmonella typhimurium is present in the intestinal lumen, several environmental and regulatory conditions modulate the expression of invasion factors required for bacterial entry into host cells. We report here that the expression of six different S. typhimurium invasion genes encoded on SPI1 (Salmonella pathogenicity island 1) is co-ordinately regulated by oxygen, osmolarity, pH, PhoPQ, and HilA. HilA is a transcriptional activator of the OmpR/ToxR family that is also encoded on SPI1. We have found that HilA plays a central role in the co-ordinated regulation of invasion genes by environmental and regulatory conditions. HilA can activate the expression of two invasion gene-lacZY fusions on reporter plasmids in Escherichia coll, suggesting that HilA acts directly at invasion-gene promoters in S. typhimurium. We have found that the regulation of invasion genes by oxygen, osmolarity, pH, and PhoPQ is indirect and is mediated by regulation of hilA expression by these environmental and regulatory factors. We hypothesize that the complex and co-ordinate regulation of Invasion genes by HilA is an important feature of salmonella pathogenesis and allows salmonellae to enter intestinal epithelial cells.

Co-ordinated research project on comparative international studies of osteoporosis using isotope techniques. Report on the final research co-ordination meeting

International Nuclear Information System (INIS)

2002-01-01

In 1994, the International Atomic Energy Agency started the five-year Co-ordinated Research Project (CRP) on Comparative International Studies of Osteoporosis Using Isotope Techniques. The objectives of this study were: To harmonize the techniques of measuring BMD within the participating countries and to obtain data that can be compared between the different study groups (countries); To determine whether early adult PBM varies between populations over the age range from 15 to 50 years. In other words, to determine the age of peak bone mass in selected populations from developing countries; To explore environmental and nutritional contributions to any determined differences. Further information about the purpose and scope of the CRP may be found in the report of the Advisory Group Meeting (AGM) held in 19921 and other reports of this CRP. The fourth Research Co-ordination Meeting (RCM) for participants of the CRP, which is the subject of the present report, was held at the University of Sheffield Medical School; WHO Collaborating Center for Metabolic Bone Diseases in Sheffield, UK from 28 Feb. to 3 March 2000

Co-ordination of physiological and morphological responses of stomata to elevated [CO2] in vascular plants.

Science.gov (United States)

Haworth, Matthew; Elliott-Kingston, Caroline; McElwain, Jennifer C

2013-01-01

Plant stomata display a wide range of short-term behavioural and long-term morphological responses to atmospheric carbon dioxide concentration ([CO(2)]). The diversity of responses suggests that plants may have different strategies for controlling gas exchange, yet it is not known whether these strategies are co-ordinated in some way. Here, we test the hypothesis that there is co-ordination of physiological (via aperture change) and morphological (via stomatal density change) control of gas exchange by plants. We examined the response of stomatal conductance (G(s)) to instantaneous changes in external [CO(2)] (C(a)) in an evolutionary cross-section of vascular plants grown in atmospheres of elevated [CO(2)] (1,500 ppm) and sub-ambient [O(2)] (13.0 %) compared to control conditions (380 ppm CO(2), 20.9 % O(2)). We found that active control of stomatal aperture to [CO(2)] above current ambient levels was not restricted to angiosperms, occurring in the gymnosperms Lepidozamia peroffskyana and Nageia nagi. The angiosperm species analysed appeared to possess a greater respiratory demand for stomatal movement than gymnosperm species displaying active stomatal control. Those species with little or no control of stomatal aperture (termed passive) to C(a) were more likely to exhibit a reduction in stomatal density than species with active stomatal control when grown in atmospheres of elevated [CO(2)]. The relationship between the degree of stomatal aperture control to C(a) above ambient and the extent of any reduction in stomatal density may suggest the co-ordination of physiological and morphological responses of stomata to [CO(2)] in the optimisation of water use efficiency. This trade-off between stomatal control strategies may have developed due to selective pressures exerted by the costs associated with passive and active stomatal control.

Roadside Judgments in Children with Developmental Co-ordination Disorder

Science.gov (United States)

Purcell, Catherine; Wann, John P.; Wilmut, Kate; Poulter, Damian

2011-01-01

As pedestrians, the perceptual ability to accurately judge the relative rate of approaching vehicles and select a suitable crossing gap requires sensitivity to looming. It also requires that crossing judgments are synchronized with motoric capabilities. Previous research has suggested that children with Developmental Co-ordination Disorder (DCD)…

Construction and analysis of the transcription factor-microRNA co-regulatory network response to Mycobacterium tuberculosis: a view from the blood.

Science.gov (United States)

Lin, Yan; Duan, Zipeng; Xu, Feng; Zhang, Jiayuan; Shulgina, Marina V; Li, Fan

2017-01-01

Mycobacterium tuberculosis ( Mtb ) infection has been regional outbreak, recently. The traditional focus on the patterns of "reductionism" which was associated with single molecular changes has been unable to meet the demand of early diagnosis and clinical application when current tuberculosis infection happened. In this study, we employed a systems biology approach to collect large microarray data sets including mRNAs and microRNAs (miRNAs) to identify the differentially expressed mRNAs and miRNAs in the whole blood of TB patients. The aim was to identify key genes associated with the immune response in the pathogenic process of tuberculosis by analyzing the co-regulatory network that was consisted of transcription factors and miRNAs as well as their target genes. The network along with their co-regulatory genes was analyzed utilizing Transcriptional Regulatory Element Database (TRED) and Database for Annotation, Visualization and Integrated Discovery (DAVID). We got 21 (19 up-regulated and 2 down-regulated) differentially expressed genes that were co-regulated by transcription factors and miRNAs. KEGG pathway enrichment analysis showed that the 21 differentially expressed genes were predominantly involved in Tuberculosis signaling pathway, which may play a major role in tuberculosis biological process. Quantitative real-time PCR was performed to verify the over expression of co-regulatory genes ( FCGR1A and CEBPB ). The genetic expression was correlated with clinicopathological characteristics in TB patients and inferences drawn. Our results suggest the TF-miRNA gene co-regulatory network may help us further understand the molecular mechanism of immune response to tuberculosis and provide us a new angle of future biomarker and therapeutic targets.

Feasibility of central co-ordinated EMA/CO for gestational trophoblastic disease in the Netherlands

NARCIS (Netherlands)

van der Houwen, Clasien; Rietbroek, Ron C.; Lok, Christianne A. R.; ten Kate-Booij, Marianne J.; Lammes, Frits B.; Ansink, Anca C.

2004-01-01

In the Netherlands, high risk gestational trophoblastic disease (GTD) patients are treated in different referral hospitals with a national working party on trophoblastic tumours having a co-ordinating function. Our purpose was to evaluate whether this policy is a satisfactory alternative to complete

Supply chain co-ordination and industry clockspeed: an exploratory study

NARCIS (Netherlands)

Voordijk, Johannes T.; Akkermans, Henk; Meijboom, Bert

2003-01-01

The increasing velocity of change, or clockspeed, in the business environment is a key challenge for firms and industries nowadays. In this study, the impact of industry and organisation clockspeed on specific mechanisms used for supply chain co-ordination is investigated from an

nilR is necessary for co-ordinate repression of Xenorhabdus nematophila mutualism genes.

Science.gov (United States)

Cowles, Charles E; Goodrich-Blair, Heidi

2006-11-01

The bacterial mutualist Xenorhabdus nematophila colonizes a specific region of its nematode host Steinernema carpocapsae. We previously reported the identification of a chromosomal locus encoding three X. nematophila genes of unknown function, nilA, B and C, that are each necessary for colonization. Subsequent work indicated the global regulator Lrp is a repressor of nilC: nilC transcription is elevated in an lrp mutant and Lrp interacts directly with the nilC promoter. In this manuscript, we report the identification of an additional gene, nilR, required for repression of nilC transcription. We show that nilR and lrp mutants also have elevated expression of nilA and nilB, demonstrating that nilA, B and C are co-ordinately regulated. nil gene expression is derepressed most strongly when both nilR and lrp are lacking, suggesting NilR and Lrp synergistically repress nil transcription. NilR contains a helix-turn-helix-type DNA binding domain and likely acts directly at promoters. A comparison of the wild type and nilR proteomes indicates that NilR, unlike Lrp, regulates a small number of genes. Finally, X. nematophila carrying an ectopic copy of nilR colonizes at approximately 60-fold lower levels than the control strain, suggesting that derepression of nil gene expression is necessary for nematode colonization.

Rain Scattering and Co-ordinate Distance Calculation

Directory of Open Access Journals (Sweden)

M. Hajny

1998-12-01

Full Text Available Calculations of scattered field on the rain objects are based on using of Multiple MultiPole (MMP numerical method. Both bi-static scattering function and bi-static scattering cross section are calculated in the plane parallel to Earth surface. The co-ordination area was determined using the simple model of scattering volume [1]. Calculation for frequency 9.595 GHz and antenna elevation of 25° was done. Obtained results are compared with calculation in accordance to ITU-R recommendation.

On Constancy of Second Co-ordinate of the gonality sequence

OpenAIRE

Pal, Sarbeswar

2017-01-01

Let $X$ be a K3 surface and $L$ be an ample line bundle on it. In this article we will prove that under certain condition the second co-ordinate of the gonality sequence is constant along the smooth curves in the linear system $|L|$.

Preparation and crystal structure of carbonyltris (diethyldithiocarbamato) technetium (III): an unexpected source of co-ordinated carbon monoxide

International Nuclear Information System (INIS)

Baldas, J.; Bonnyman, J.; Pojer, P.M.; Williams, G.A.

1981-10-01

Tc(S 2 CNEt 2 ) 3 CO has been prepared by the reduction of NH 4 TcO 4 with formamidinesulphinic acid in the presence of NaS 2 CNEt 2 . It is suggested that the co-ordinated carbon monoxide is formed after co-ordination of formamidinesulphinic acid, or some decomposition product, with technetium. The crystal structure of Tc(S 2 CNEt 2 ) 3 CO has been determined by single-crystal X-ray diffraction methods at 17 deg. C. Diffractometry has provided significant Bragg intensities for 2045 independent reflections and the structure has been refined by full-matrix least-squares methods to R 0.049. The compound is isostructural with the rhenium analogue and consists of discrete Tc(S 2 CNEt 2 ) 3 CO molecules, each containing a terminal linear CO group. The technetium atom has a seven co-ordinate environment which is best described as a distorted pentagonal bipyramid

Analysis of the morphology of oral structures from 3-D co-ordinate data.

Science.gov (United States)

Jovanovski, V; Lynch, E

2000-01-01

A non-intrusive method is described which can be used to determine the forms of oral structures. It is based on the digitising of standard replicas with a co-ordinate-measuring machine. Supporting software permits a mathematical model of the surface to be reconstructed and visualised from captured three-dimensional co-ordinates. A series of surface data sets can be superposed into a common reference frame without the use of extrinsic markers, allowing changes in the shapes of oral structures to be quantified accurately over an extended period of time. The system has found numerous applications.

Co-ordinated research programme on isotope-aided studies of the bioavailability of iron and zinc from human diets. Report of the second research co-ordination meeting, Hyderabad, India, 16-20 November 1992

International Nuclear Information System (INIS)

1994-01-01

The Co-ordinated Research Programme (CRP) on ''Isotope-Aided Studies on the Bioavailability of Iron and Zinc from Human Diets'' was initiated by the IAEA in 1990, and presently encompasses participating institutes in 11 countries. A summary of the discussions that took place during thr second Research Co-ordination Meeting held in Hyderabad, India, between 16-20 November 1992, is given in this report together with 12 working papers (progress reports) presented by individual participants. A separate abstract was prepared for each of these papers. Refs, figs and tabs

Overcurrent protection co-ordination. A modern approach for modern devices

Energy Technology Data Exchange (ETDEWEB)

Hindle, P. [GEC Alsthom Engineering Systems Ltd., Whetstone (United Kingdom); Sanderson, J.V.H. [Power Engineering Consultants Ltd., Cheshire (United Kingdom)

1995-12-31

A modern approach to relay co-ordination that takes advantage of the improved performance of modern protective relays and circuits was proposed. The proposed method dealt with a mixture of new and old equipment and was most useful when implemented using common spreadsheet software. The suggested approach justified reduced time margins for relay co-ordination in many difficult applications. Other established approaches were reviewed. A discussion of fixed and variable time margin allowances was presented. The formulation of an equation to determine the required upstream relay operating time was explained, with sample calculations. Relay performance standards and modern protective equipment were discussed. It was concluded that modern relays and circuit breakers are much more advanced than designs of the recent past. The method described allowed significant reductions in margins which enabled modern relays to operate faster. While calculations for the procedures were said to be tedious to perform by hand, they can be easily done with spreadsheet software. 10 refs., 4 figs.

How protein kinases co-ordinate mitosis in animal cells.

Science.gov (United States)

Ma, Hoi Tang; Poon, Randy Y C

2011-04-01

Mitosis is associated with profound changes in cell physiology and a spectacular surge in protein phosphorylation. To accomplish these, a remarkably large portion of the kinome is involved in the process. In the present review, we will focus on classic mitotic kinases, such as cyclin-dependent kinases, Polo-like kinases and Aurora kinases, as well as more recently characterized players such as NIMA (never in mitosis in Aspergillus nidulans)-related kinases, Greatwall and Haspin. Together, these kinases co-ordinate the proper timing and fidelity of processes including centrosomal functions, spindle assembly and microtubule-kinetochore attachment, as well as sister chromatid separation and cytokinesis. A recurrent theme of the mitotic kinase network is the prevalence of elaborated feedback loops that ensure bistable conditions. Sequential phosphorylation and priming phosphorylation on substrates are also frequently employed. Another important concept is the role of scaffolds, such as centrosomes for protein kinases during mitosis. Elucidating the entire repertoire of mitotic kinases, their functions, regulation and interactions is critical for our understanding of normal cell growth and in diseases such as cancers.

Improvement of basic food crops in Africa through plant breeding, including the use of induced mutations. Report of the third research co-ordination meeting of FAO/IAEA/ITALY co-ordinated research programme. Working material

Energy Technology Data Exchange (ETDEWEB)

NONE

1997-12-01

A Co-ordinated Research Programme, on ``Improvement of basic food corps in Africa through plant breeding including the use of induced mutations``, funded by the Italian Governmnet, was initiated in the Joint Division of the Food and Agriculture Organization and International Atomic Energy Agency, Vienna. The primary objective of this CRP was to breed improved varieties of staple food crops of Africa with main emphasis on the indigenous species and local cultivars. The Third Research Co-ordination Meeting (RCM) under the FAO/IAEA/ITALY Co-ordinated Research Programme was held in Nairobi, Kenya, 20-24 September 1993 in which 24 persons participated and 18 scientific reports were presented. These included reports from 10 Research Contract holders from Africa, 3 Technical Contract holders from Italy and the update on the backstopping of research carried out at the IAEA Laboratories, Seibersdorf. The reports, and conclusions and recommendations made by the participants are presented in this publication. Refs, figs, tabs.

Improvement of basic food crops in Africa through plant breeding, including the use of induced mutations. Report of the third research co-ordination meeting of FAO/IAEA/ITALY co-ordinated research programme. Working material

International Nuclear Information System (INIS)

1997-01-01

A Co-ordinated Research Programme, on ''Improvement of basic food corps in Africa through plant breeding including the use of induced mutations'', funded by the Italian Governmnet, was initiated in the Joint Division of the Food and Agriculture Organization and International Atomic Energy Agency, Vienna. The primary objective of this CRP was to breed improved varieties of staple food crops of Africa with main emphasis on the indigenous species and local cultivars. The Third Research Co-ordination Meeting (RCM) under the FAO/IAEA/ITALY Co-ordinated Research Programme was held in Nairobi, Kenya, 20-24 September 1993 in which 24 persons participated and 18 scientific reports were presented. These included reports from 10 Research Contract holders from Africa, 3 Technical Contract holders from Italy and the update on the backstopping of research carried out at the IAEA Laboratories, Seibersdorf. The reports, and conclusions and recommendations made by the participants are presented in this publication. Refs, figs, tabs

Inferring the transcriptional landscape of bovine skeletal muscle by integrating co-expression networks.

Directory of Open Access Journals (Sweden)

Nicholas J Hudson

Full Text Available BACKGROUND: Despite modern technologies and novel computational approaches, decoding causal transcriptional regulation remains challenging. This is particularly true for less well studied organisms and when only gene expression data is available. In muscle a small number of well characterised transcription factors are proposed to regulate development. Therefore, muscle appears to be a tractable system for proposing new computational approaches. METHODOLOGY/PRINCIPAL FINDINGS: Here we report a simple algorithm that asks "which transcriptional regulator has the highest average absolute co-expression correlation to the genes in a co-expression module?" It correctly infers a number of known causal regulators of fundamental biological processes, including cell cycle activity (E2F1, glycolysis (HLF, mitochondrial transcription (TFB2M, adipogenesis (PIAS1, neuronal development (TLX3, immune function (IRF1 and vasculogenesis (SOX17, within a skeletal muscle context. However, none of the canonical pro-myogenic transcription factors (MYOD1, MYOG, MYF5, MYF6 and MEF2C were linked to muscle structural gene expression modules. Co-expression values were computed using developing bovine muscle from 60 days post conception (early foetal to 30 months post natal (adulthood for two breeds of cattle, in addition to a nutritional comparison with a third breed. A number of transcriptional landscapes were constructed and integrated into an always correlated landscape. One notable feature was a 'metabolic axis' formed from glycolysis genes at one end, nuclear-encoded mitochondrial protein genes at the other, and centrally tethered by mitochondrially-encoded mitochondrial protein genes. CONCLUSIONS/SIGNIFICANCE: The new module-to-regulator algorithm complements our recently described Regulatory Impact Factor analysis. Together with a simple examination of a co-expression module's contents, these three gene expression approaches are starting to illuminate the in vivo

Co-ordinating innate and adaptive immunity to viral infection: mobility is the key

DEFF Research Database (Denmark)

Wern, Jeanette Erbo; Thomsen, Allan Randrup

2009-01-01

The host counters a viral infection through a complex response made up of components belonging to both the innate and the adaptive immune system. In this report, we review the mechanisms underlying this response, how it is induced and how it is co-ordinated. As cell-cell communication represents...... the very essence of immune system physiology, a key to a rapid, efficient and optimally regulated immune response is the ability of the involved cells to rapidly shift between a stationary and a mobile state, combined with stringent regulation of cell migration during the mobile state. Through the co......-ordinated recruitment of different cell types intended to work in concert, cellular co-operation is optimized particularly under conditions that may involve rare cells. Consequently, a major focus is placed on presenting an overview of the co-operative events and the associated cell migration, which is essential...

The use of the co-ordinate measuring machine for the study of three-dimensional biomechanics of the knee.

Science.gov (United States)

Veselko, M; Jenko, M; Lipuscek, I

1998-07-01

Original methodology for the study of three-dimensional biomechanics of the knee is presented in the paper. Defining the geometry of the rigid body in the body-fixed reference frame and the orientation of the body-fixed reference frame in the global co-ordinate system are the theoretic basis. The data in the form of co-ordinates of the Cartesian frame are gathered by the co-ordinate measuring machine and analysed by specially computer program. The theory and a practical example of the study of the three-dimensional biomechanics of the knee are presented. Various possibilities of the use of the methodology are discussed.

Rigid Body Motion Calculated From Spatial Co-ordinates of Markers ...

African Journals Online (AJOL)

In this paper, we present a unified method for calculating spatial coordinates of markers for a rigid body motion such as in bones. Kinematical analysis of bone movement in cadaveric specimens or living objects had been developed. Here, we show how spatial co-ordinates of markers in or on bone can be calculated from ...

Insights into the post-transcriptional regulation of the mitochondrial electron transport chain.

Science.gov (United States)

Sirey, Tamara M; Ponting, Chris P

2016-10-15

The regulation of the mitochondrial electron transport chain is central to the control of cellular homeostasis. There are significant gaps in our understanding of how the expression of the mitochondrial and nuclear genome-encoded components of the electron transport chain are co-ordinated, and how the assembly of the protein complexes that constitute the electron transport chain are regulated. Furthermore, the role post-transcriptional gene regulation may play in modulating these processes needs to be clarified. This review summarizes the current knowledge regarding the post-transcriptional gene regulation of the electron transport chain and highlights how noncoding RNAs may contribute significantly both to complex electron transport chain regulatory networks and to mitochondrial dysfunction. © 2016 The Author(s).

Co-ordinated traffic control in freeway corridors : A proposed evaluation approach

NARCIS (Netherlands)

Hoogendoorn, S.P.; Bovy, P.H.L.; Van der Zijpp, N.J.

1997-01-01

In the course of the Telematics implications Programme Transport of the European Commission Fourth Framework Research Programme much attention is devoted to evaluation and demonstration. This report is part of the DACCORD project TR1017, devoted to the development and application of co-ordinated

Changing Housing for Elderly People and Co-ordination Issues in Europe

NARCIS (Netherlands)

Houben, P.P.J.A.M.

2001-01-01

The inter-sectoral policy systems of housing for elderly people in the EU-countries change with the implementation of ageing in place and by general processes of modernisation of society and welfare state. For implementation of the innovations the relevance of co-ordination between the sector

Evolutionary Analysis of DELLA-Associated Transcriptional Networks

Directory of Open Access Journals (Sweden)

Miguel A. Blázquez

2017-04-01

Full Text Available DELLA proteins are transcriptional regulators present in all land plants which have been shown to modulate the activity of over 100 transcription factors in Arabidopsis, involved in multiple physiological and developmental processes. It has been proposed that DELLAs transduce environmental information to pre-wired transcriptional circuits because their stability is regulated by gibberellins (GAs, whose homeostasis largely depends on environmental signals. The ability of GAs to promote DELLA degradation coincides with the origin of vascular plants, but the presence of DELLAs in other land plants poses at least two questions: what regulatory properties have DELLAs provided to the behavior of transcriptional networks in land plants, and how has the recruitment of DELLAs by GA signaling affected this regulation. To address these issues, we have constructed gene co-expression networks of four different organisms within the green lineage with different properties regarding DELLAs: Arabidopsis thaliana and Solanum lycopersicum (both with GA-regulated DELLA proteins, Physcomitrella patens (with GA-independent DELLA proteins and Chlamydomonas reinhardtii (a green alga without DELLA, and we have examined the relative evolution of the subnetworks containing the potential DELLA-dependent transcriptomes. Network analysis indicates a relative increase in parameters associated with the degree of interconnectivity in the DELLA-associated subnetworks of land plants, with a stronger effect in species with GA-regulated DELLA proteins. These results suggest that DELLAs may have played a role in the coordination of multiple transcriptional programs along evolution, and the function of DELLAs as regulatory ‘hubs’ became further consolidated after their recruitment by GA signaling in higher plants.

Rice breeding with induced mutations II. Report of an FAO/IAEA research co-ordination meeting

Energy Technology Data Exchange (ETDEWEB)

NONE

1970-03-01

This report contains the proceedings of the fourth meeting of participants in the FAO/IAEA Co-ordinated Program of Research on the Use of Induced Mutations in Rice Breeding, a program which was initiated in 1964. The three previous meetings were reported as follows: First: proceedings published in the International Rice Commission Newsletter, Vol. XV, No. 1 (1966). Second: report presented to the IRC Working Party meeting at Lake Charles, Louisiana, 18-30 July 1966. Third: proceedings published by the IAEA as Technical Reports Series No. 86 under the title 'Rice breeding with induced mutations'. The fourth meeting was held at Oiso, Japan, on 12-14 August 1968. Co-operators from nine countries attended, together with scientists from five other countries, the International Rice Research Institute, the Rockefeller Foundation, the International Rice Commission, and the FAO and IAEA. In addition, a number of scientists from the host country were present. The purpose of the meeting was to present reports on research related to or carried out under the co-ordinated program in 1967/68, to review and co-ordinate research plans for 1968/69, and to draw up technical recommendations for future work.

The development of the natural gas transportation network in Brazil: Recent changes to the gas law and its role in co-ordinating new investments

International Nuclear Information System (INIS)

Colomer Ferraro, Marcelo; Hallack, Michelle

2012-01-01

In Brazil, the consensus that natural gas regulation has failed to attract investments, especially from private companies, culminated in a new law for the natural gas sector, passed in March 2009 (Law No. 11,909). The most significant change this new law introduced was the new governmental role in co-ordinating investments in the transportation sector. The Brazilian government has had to plan pipeline networks, estimate the size of demand for transportation and organise bidding to select investors for new pipeline projects. Although the law has established a clear regulatory framework for the midstream sector, providing stability and the legal certainty necessary for long-term investments in assets with high specificity, it has not been able to fill all of the gaps that remain under Law 9,478. In this sense, besides the challenges related to effective implementation of the regulatory attributes defined in Law 11,909, the absence of certain issues prevents the modified legal structure from encouraging the entry of new players in the transportation sector. This paper has identified, according to the neo-institutional view, the mechanisms of co-ordination introduced by the new law and the limitations of the new regulatory framework. - Highlights: ► Natural gas transportation investment requires some coordination mechanisms. ► The 9,478 Act was not capable to incentive the new player entrance. ► Brazilian natural gas industry is strongly concentrated in Petrobras hands. ► The new Brazilian legal framework aims to reduce transaction costs in gas industry. ► The industrial structure of the gas sector discourages the entrance of new investors.

Multi-tissue analysis of co-expression networks by higher-order generalized singular value decomposition identifies functionally coherent transcriptional modules.

Directory of Open Access Journals (Sweden)

Xiaolin Xiao

2014-01-01

Full Text Available Recent high-throughput efforts such as ENCODE have generated a large body of genome-scale transcriptional data in multiple conditions (e.g., cell-types and disease states. Leveraging these data is especially important for network-based approaches to human disease, for instance to identify coherent transcriptional modules (subnetworks that can inform functional disease mechanisms and pathological pathways. Yet, genome-scale network analysis across conditions is significantly hampered by the paucity of robust and computationally-efficient methods. Building on the Higher-Order Generalized Singular Value Decomposition, we introduce a new algorithmic approach for efficient, parameter-free and reproducible identification of network-modules simultaneously across multiple conditions. Our method can accommodate weighted (and unweighted networks of any size and can similarly use co-expression or raw gene expression input data, without hinging upon the definition and stability of the correlation used to assess gene co-expression. In simulation studies, we demonstrated distinctive advantages of our method over existing methods, which was able to recover accurately both common and condition-specific network-modules without entailing ad-hoc input parameters as required by other approaches. We applied our method to genome-scale and multi-tissue transcriptomic datasets from rats (microarray-based and humans (mRNA-sequencing-based and identified several common and tissue-specific subnetworks with functional significance, which were not detected by other methods. In humans we recapitulated the crosstalk between cell-cycle progression and cell-extracellular matrix interactions processes in ventricular zones during neocortex expansion and further, we uncovered pathways related to development of later cognitive functions in the cortical plate of the developing brain which were previously unappreciated. Analyses of seven rat tissues identified a multi

Multi-tissue analysis of co-expression networks by higher-order generalized singular value decomposition identifies functionally coherent transcriptional modules.

Science.gov (United States)

Xiao, Xiaolin; Moreno-Moral, Aida; Rotival, Maxime; Bottolo, Leonardo; Petretto, Enrico

2014-01-01

Recent high-throughput efforts such as ENCODE have generated a large body of genome-scale transcriptional data in multiple conditions (e.g., cell-types and disease states). Leveraging these data is especially important for network-based approaches to human disease, for instance to identify coherent transcriptional modules (subnetworks) that can inform functional disease mechanisms and pathological pathways. Yet, genome-scale network analysis across conditions is significantly hampered by the paucity of robust and computationally-efficient methods. Building on the Higher-Order Generalized Singular Value Decomposition, we introduce a new algorithmic approach for efficient, parameter-free and reproducible identification of network-modules simultaneously across multiple conditions. Our method can accommodate weighted (and unweighted) networks of any size and can similarly use co-expression or raw gene expression input data, without hinging upon the definition and stability of the correlation used to assess gene co-expression. In simulation studies, we demonstrated distinctive advantages of our method over existing methods, which was able to recover accurately both common and condition-specific network-modules without entailing ad-hoc input parameters as required by other approaches. We applied our method to genome-scale and multi-tissue transcriptomic datasets from rats (microarray-based) and humans (mRNA-sequencing-based) and identified several common and tissue-specific subnetworks with functional significance, which were not detected by other methods. In humans we recapitulated the crosstalk between cell-cycle progression and cell-extracellular matrix interactions processes in ventricular zones during neocortex expansion and further, we uncovered pathways related to development of later cognitive functions in the cortical plate of the developing brain which were previously unappreciated. Analyses of seven rat tissues identified a multi-tissue subnetwork of co

The Standards Agenda: Reflections of a Special Educational Needs Co-ordinator

Science.gov (United States)

Glazzard, Jonathan

2014-01-01

This study is a life history account of Bev, a special educational needs co-ordinator who works in a primary school in England. The research examines how, within Bev's experiences, the discourses of integration and inclusion have affected learners with special educational needs. Additionally, the study examines the impact of the…

Self-processing 2A-polyproteins--a system for co-ordinate expression of multiple proteins in transgenic plants.

Science.gov (United States)

Halpin, C; Cooke, S E; Barakate, A; El Amrani, A; Ryan, M D

1999-02-01

Achieving co-ordinate, high-level and stable expression of multiple transgenes in plants is currently difficult. Expression levels are notoriously variable and influenced by factors that act independently on transgenes at different genetic loci. Instability of expression due to loss, re-arrangement or silencing of transgenes may occur, and is exacerbated by increasing numbers of transgenic loci and repeated use of homologous sequences. Even linking two or more genes within a T-DNA does not necessarily result in co-ordinate expression. Linking proteins in a single open reading frame--a polyprotein--is a strategy for co-ordinate expression used by many viruses. After translation, polyproteins are processed into constituent polypeptides, usually by proteinases encoded within the polyprotein itself. However, in foot-and-mouth disease virus (FMDV), a sequence (2A) of just 16-20 amino acids appears to have the unique capability to mediate cleavage at its own C-terminus by an apparently enzyme-independent, novel type of reaction. This sequence can also mediate cleavage in a heterologous protein context in a range of eukaryotic expression systems. We have constructed a plasmid in which the 2A sequence is inserted between the reporter genes chloramphenicol acetyltransferase (CAT) and beta-glucuronidase (GUS), maintaining a single open reading frame. Here we report that expression of this construct in wheatgerm lysate and transgenic plants results in efficient cleavage of the polyprotein and co-ordinate expression of active CAT and GUS. Self-processing polyproteins using the FMDV 2A sequence could therefore provide a system for ensuring co-ordinated, stable expression of multiple introduced proteins in plant cells.

Spatial Treatment of the Slab-geometry Discrete Ordinates Equations Using Artificial Neural Networks

International Nuclear Information System (INIS)

Brantley, P S

2001-01-01

An artificial neural network (ANN) method is developed for treating the spatial variable of the one-group slab-geometry discrete ordinates (S N ) equations in a homogeneous medium with linearly anisotropic scattering. This ANN method takes advantage of the function approximation capability of multilayer ANNs. The discrete ordinates angular flux is approximated by a multilayer ANN with a single input representing the spatial variable x and N outputs representing the angular flux in each of the discrete ordinates angular directions. A global objective function is formulated which measures how accurately the output of the ANN approximates the solution of the discrete ordinates equations and boundary conditions at specified spatial points. Minimization of this objective function determines the appropriate values for the parameters of the ANN. Numerical results are presented demonstrating the accuracy of the method for both fixed source and incident angular flux problems

The relationship between temperamental traits and the level of performance of an eye-hand co-ordination task in jet pilots.

Science.gov (United States)

Biernacki, Marcin; Tarnowski, Adam

2008-01-01

When assessing the psychological suitability for the profession of a pilot, it is important to consider personality traits and psychomotor abilities. Our study aimed at estimating the role of temperamental traits as components of pilots' personality in eye-hand co-ordination. The assumption was that differences in the escalation of the level of temperamental traits, as measured with the Formal Characteristic of Behaviour-Temperament Inventory (FCB-TI), will significantly influence eye-hand co-ordination. At the level of general scores, enhanced briskness proved to be the most important trait for eye-hand co-ordination. An analysis of partial scores additionally underlined the importance of sensory sensitivity, endurance and activity. The application of eye-hand co-ordination tasks, which involve energetic and temporal dimensions of performance, helped to disclose the role of biologically-based personality traits in psychomotor performance. The implication of these findings for selecting pilots is discussed.

Mutation breeding of oil seed crops. Proceedings of a final research co-ordination meeting of an FAO/IAEA co-ordinated research programme held in Vienna, 11-15 January 1993

International Nuclear Information System (INIS)

1994-12-01

The document contains 19 papers presented at the final Research Co-ordination Meeting on 'Mutation Breeding of Oil Seed Crops' held in Vienna between 11-15 January 1993. A separate abstract was prepared for each paper. Refs, figs and tabs

Optimizing nitrogen fertilizer application to irrigated wheat. Results of a co-ordinated research project. 1994-1998

International Nuclear Information System (INIS)

2000-07-01

This TECDOC summarizes the results of a Co-ordinated Research Project (CRP) on the Use of Nuclear Techniques for Optimizing Fertilizer Application under Irrigated Wheat to Increase the Efficient Use of Nitrogen Fertilizer and Consequently Reduce Environmental Pollution. The project was carried out between 1994 and 1998 through the technical co-ordination of the Joint FAO/IAEA Division of Nuclear Techniques in Food and Agriculture. Fourteen Member States of the IAEA and FAO carried out a series of field experiments aimed at improving irrigation water and fertilizer-N uptake efficiencies through integrated management of the complex Interactions involving inputs, soils, climate, and wheat cultivars. Its goals were: to investigate various aspects of fertilizer N uptake efficiency of wheat crops under irrigation through an interregional research network involving countries growing large areas of irrigated wheat; to use 15 N and the soil-moisture neutron probe to determine the fate of applied N, to follow water and nitrate movement in the soil, and to determine water balance and water-use efficiency in irrigated wheat cropping systems; to use the data generated to further develop and refine various relationships in the Ceres-Wheat computer simulation model; to use the knowledge generated to produce a N-rate-recommendation package to refine specific management strategies with respect to fertilizer applications and expected yields

Comparison of the precision of two standardized co-ordinate systems for the quantitation of brain anatomy: preliminary results.

Science.gov (United States)

Sandor, T; Tieman, J; Ong, H T; Moss, M B; Jolesz, F; Albert, M

1994-10-01

We assessed reproducible definition of two standardized co-ordinate systems for intersubject analysis of brain images. The baselines in the two co-ordinate systems were a modification of the canthomeatal (mCM) line and the anterior-posterior commissural (AC-PC) line. Axial spin-echo MR images of four subjects at 1.5T were used. Operator error was computed from the replicate analyses of two operators. The mCM line was determined by the lens of the eye and the internal auditory canal, and the AC-PC line was determined by the intersection of AC and PC with the interhemispheric fissure. Reproducibility of the mCM markers (SD = 0.59 mm) did not differ significantly from that of the AC-PC line (SD = 0.68 mm). The measurement error of the angle of the baseline (delta alpha), however, was more than 7 times as large for the AC-PC line as for the mCM line. An additional error affecting the rostrocaudal rotation of the co-ordinate systems, attributable to the distance between the anatomic markers, was 2.1 and 3.6 degrees (3 mm and 5 mm slice thickness) for the mCM co-ordinate system and 8.2 and 11.0 degrees (3 mm and 5 mm slice thickness) for the AC-PC system. The AC-PC line based co-ordinate system is therefore, less reproducible than the mCM line based system. This could be improved if a combination of axial and sagittal images were used for the definition of the AC-PC line.

Insulation co-ordination aspects for power stations with generator circuit-breakers

International Nuclear Information System (INIS)

Sanders, M.; Koeppl, G.; Kreuzer, J.

1995-01-01

The generator circuit-breaker (gen. c.b.) located between the generator and the step-up transformer, is now being applied world-wide. It has become a recognized electrical component of power stations which is largely due to economical advantages and increased power station availability. Technical protection considerations for power stations have always been the reason for discussion and the object of improvement. With the use of a gen. c.b., some points of view need to be considered anew. Not only the protection system in case of fault conditions will be influenced, but also the insulation co-ordination philosophy. Below the results of some calculations concerning expected overvoltages are presented. These calculations are based on a transformer rated 264/15.5kV, 220 MVA. But the results are transferable to other power plants. Some measurements carried out on a transformer of the same rating complement the calculations. The findings may contribute to an improvement in insulation co-ordination and protection of the electrical system generator--step-up transformer

Nuclear based technologies for estimating microbial protein supply in ruminant livestock. Proceedings of the second research co-ordination meeting of a co-ordinated research project (phase 1)

International Nuclear Information System (INIS)

1999-06-01

The Joint FAO/IAEA Division of Nuclear Techniques in Food and Agriculture through its Co-ordinated Research Projects (CRPs), has been assisting national agricultural research systems in Member States to develop and apply nuclear and related techniques for improving livestock productivity. The programmes have focused on animal nutrition, animal reproduction and more recently on animal nutrition/reproduction interactions with emphasis on smallholder farming systems. The measurement of microbial protein supply to ruminant livestock has been an important area of research in ruminant nutrition. An estimate of microbial protein contribution to the intestinal protein flow is important for estimating the protein requirement of ruminant animals. Understanding the process of microbial protein synthesis has been difficult however, and due to the lack of simple and accurate methods for measuring microbial protein production in vivo, the methods used are based on complex microbial markers which require surgically prepared animals. As a result of a consultants meeting held in May 1995 to advise the Joint FAO/IAEA Division on the feasibility of using nuclear and related techniques for the development and validation of techniques for measuring microbial protein supply in ruminant animals, an FAO/IAEA Co-ordinated Research Project on Development, Standardization and Validation of Nuclear Based Technologies for Measuring Microbial Protein Supply in Ruminant Livestock for Improving Productivity was initiated in 1996, with a view to validating and adapting this technology for use in developing countries. To assist scientists participating in the CRP, a laboratory manual containing experimental protocols and methodologies for standardization and validation of the urine purine derivative technique and the development of models to suit local conditions, was published as IAEA-TECDOC-945. The present publication contains the final reports from participants in Phase 1 of the project

Nuclear based technologies for estimating microbial protein supply in ruminant livestock. Proceedings of the second research co-ordination meeting of a co-ordinated research project (phase 1)

Energy Technology Data Exchange (ETDEWEB)

NONE

1999-06-01

The Joint FAO/IAEA Division of Nuclear Techniques in Food and Agriculture through its Co-ordinated Research Projects (CRPs), has been assisting national agricultural research systems in Member States to develop and apply nuclear and related techniques for improving livestock productivity. The programmes have focused on animal nutrition, animal reproduction and more recently on animal nutrition/reproduction interactions with emphasis on smallholder farming systems. The measurement of microbial protein supply to ruminant livestock has been an important area of research in ruminant nutrition. An estimate of microbial protein contribution to the intestinal protein flow is important for estimating the protein requirement of ruminant animals. Understanding the process of microbial protein synthesis has been difficult however, and due to the lack of simple and accurate methods for measuring microbial protein production in vivo, the methods used are based on complex microbial markers which require surgically prepared animals. As a result of a consultants meeting held in May 1995 to advise the Joint FAO/IAEA Division on the feasibility of using nuclear and related techniques for the development and validation of techniques for measuring microbial protein supply in ruminant animals, an FAO/IAEA Co-ordinated Research Project on Development, Standardization and Validation of Nuclear Based Technologies for Measuring Microbial Protein Supply in Ruminant Livestock for Improving Productivity was initiated in 1996, with a view to validating and adapting this technology for use in developing countries. To assist scientists participating in the CRP, a laboratory manual containing experimental protocols and methodologies for standardization and validation of the urine purine derivative technique and the development of models to suit local conditions, was published as IAEA-TECDOC-945. The present publication contains the final reports from participants in Phase 1 of the project

A Coding of Real Null Four-Momenta into World-Sheet Co-ordinates

OpenAIRE

Fairlie, David B.

2008-01-01

The results of minimizing the action for string-like systems on a simply-connected world sheet are shown to encode the Cartesian components of real null momentum four-vectors into co-ordinates on the world sheet. This identification arises consistently from different approaches to the problem.

Ordination of self-organizing feature map neural networks and its application to the study of plant communities

Institute of Scientific and Technical Information of China (English)

Jintun ZHANG; Dongping MENG; Yuexiang XI

2009-01-01

A self-organizing feature map (SOFM) neural network is a powerful tool in analyzing and solving complex, non-linear problems. According to its features, a SOFM is entirely compatible with ordination studies of plant communities. In our present work, mathematical principles, and ordination techniques and procedures are introduced. A SOFM ordination was applied to the study of plant communities in the middle of the Taihang mountains. The ordination was carried out by using the NNTool box in MATLAB. The results of 68 quadrats of plant communities were distributed in SOFM space. The ordination axes showed the ecological gradients clearly and provided the relationships between communities with ecological meaning. The results are consistent with the reality of vegetation in the study area. This suggests that SOFM ordination is an effective technique in plant ecology. During ordination procedures, it is easy to carry out clustering of communities and so it is beneficial for combining classification and ordination in vegetation studies.

Seven-co-ordination in chlorohexakis(trimethylphosphine oxide)- uranium(IV) trichloride: crystal and molecular structure

Energy Technology Data Exchange (ETDEWEB)

Bombieri, G; Forsellini, E [Consiglio Nazionale delle Ricerche, Padua (Italy). Lab. di Chimica e Tecnologia dei Radioelementi; Brown, D; Whittaker, B

1976-01-01

The structure of the title compound has been determined by single-crystal X-ray diffraction methods from diffractometer data and refined to a final R of 0.023. The compound crystallises in space group R3c with asub(hex) = 18.447(3), csub(hex) = 19.348(3) A, Z = 6. The uranium atom is co-ordinated to one chlorine (U-Cl 2.813 A) and six oxygen atoms (mean U-O 2.26 A); the co-ordination polyhedron can be described as a distorted monocapped trigonal antiprism or as a distorted monocapped octahedron. The anionic chlorines are more than 6.22 A from the uranium atoms. The results are discussed in relation to spectral data for this and related uranium(IV) complexes.

Seven-co-ordination in chlorohexakis(trimethylphosphine oxide)- uranium(IV) trichloride: crystal and molecular structure

International Nuclear Information System (INIS)

Bombieri, G.; Forsellini, E.; Brown, D.; Whittaker, B.

1976-01-01

The structure of the title compound has been determined by single-crystal X-ray diffraction methods from diffractometer data and refined to a final R of 0.023. The compound crystallises in space group R3c with asub(hex) = 18.447(3), csub(hex) = 19.348(3) A, Z = 6. The uranium atom is co-ordinated to one chlorine (U-Cl 2.813 A) and six oxygen atoms (mean U-O 2.26 A); the co-ordination polyhedron can be described as a distorted monocapped trigonal antiprism or as a distorted monocapped octahedron. The anionic chlorines are more than 6.22 A from the uranium atoms. The results are discussed in relation to spectral data for this and related uranium(IV) complexes. (author)

Insulation co-ordination in high-voltage electric power systems

CERN Document Server

Diesendorf, W

2015-01-01

Insulation Co-ordination in High-Voltage Electric Power Systems deals with the methods of insulation needed in different circumstances. The book covers topics such as overvoltages and lightning surges; disruptive discharge and withstand voltages; self-restoring and non-self-restoring insulation; lightning overvoltages on transmission lines; and the attenuation and distortion of lightning surges. Also covered in the book are topics such as the switching surge designs of transmission lines, as well as the insulation coordination of high-voltage stations. The text is recommended for electrical en

Co-ordinated research project on application of nuclear techniques in the prevention of degenerative diseases (obesity and non-Insulin dependent diseases) in ageing. Report on the second research co-ordination meeting

Energy Technology Data Exchange (ETDEWEB)

NONE

2002-07-01

In the developed countries, research using nuclear methods has been substantially used to examine the physiological and biochemical mechanisms involved in obesity-related diseases. This Co-ordinated Research Project (CRP) is intended to promote the use of these techniques in the developing world. The specific objectives of this CRP are: 1. To define the magnitude of the obesity/NIDDM problem in developing countries. 2. To identify vulnerable groups at high risk. 3. To describe the metabolic mechanisms involved. The purpose of this first Research Co-ordination Meeting (RCM) was thus to develop a worldwide collaboration in the use of nuclear and isotopic techniques to investigate the aetiology of degenerative diseases in ageing. All countries participating in this CRP are going through the epidemiological transition with changes in lifestyles to approach those seen in the developed nations.

Co-ordinated research project on application of nuclear techniques in the prevention of degenerative diseases (obesity and non-Insulin dependent diseases) in ageing. Report on the second research co-ordination meeting

International Nuclear Information System (INIS)

2002-01-01

In the developed countries, research using nuclear methods has been substantially used to examine the physiological and biochemical mechanisms involved in obesity-related diseases. This Co-ordinated Research Project (CRP) is intended to promote the use of these techniques in the developing world. The specific objectives of this CRP are: 1. To define the magnitude of the obesity/NIDDM problem in developing countries. 2. To identify vulnerable groups at high risk. 3. To describe the metabolic mechanisms involved. The purpose of this first Research Co-ordination Meeting (RCM) was thus to develop a worldwide collaboration in the use of nuclear and isotopic techniques to investigate the aetiology of degenerative diseases in ageing. All countries participating in this CRP are going through the epidemiological transition with changes in lifestyles to approach those seen in the developed nations

Co-ordination properties of diglycol-amide (DGA) to trivalent curium and lanthanides studied by XAS, XRD and XPS methods

International Nuclear Information System (INIS)

Yaita, T.; Hirata, M.; Narita, H.; Tachimori, S.; Yamamoto, H.; Edelstein, N.M.; Bucher, J.J.; Shuh, D.K.; Rao, L.

2001-01-01

Co-ordination properties of diglycol-amide (DGA) to trivalent curium and to the trivalent lanthanides were studied by the EXAFS, the XRD and the XPS methods. The structural determinations by both the crystal XRD and the solution EXAFS methods showed that the DGA co-ordinated to the trivalent lanthanide ion in a tridentate fashion: co-ordination of three oxygen atoms of each ligand to the metal ion. The bond distances of Er-O (carbonyl) and Er-O (ether) in the Er-DGA complex were 2.35 Angstrom, and 2.46 Angstrom, respectively, while the atom distances of Cm-O (carbonyl) and Cm-O (ether) in the Cm-DGA complex were 2.42 Angstrom and 3.94 Angstrom, respectively from the EXAFS data for the Cm-DGA complex. Accordingly, the DGA would behave only as a semi-tridentate in the co-ordination to trivalent curium in solution. We determined the valence band structures of the Er-DGA complex by the XPS in order to clarify the bond properties of the complex, and assigned the XPS spectrum by using the DV-DS molecular orbital calculation method. (authors)

Hfq-dependent, co-ordinate control of cyclic diguanylate synthesis and catabolism in the plague pathogen Yersinia pestis.

Science.gov (United States)

Bellows, Lauren E; Koestler, Benjamin J; Karaba, Sara M; Waters, Christopher M; Lathem, Wyndham W

2012-11-01

Yersinia pestis, the cause of the disease plague, forms biofilms to enhance flea-to-mammal transmission. Biofilm formation is dependent on exopolysaccharide synthesis and is controlled by the intracellular levels of the second messenger molecule cyclic diguanylate (c-di-GMP), but the mechanisms by which Y. pestis regulates c-di-GMP synthesis and turnover are not fully understood. Here we show that the small RNA chaperone Hfq contributes to the regulation of c-di-GMP levels and biofilm formation by modulating the abundance of both the c-di-GMP phosphodiesterase HmsP and the diguanylate cyclase HmsT. To do so, Hfq co-ordinately promotes hmsP mRNA accumulation while simultaneously decreasing the stability of the hmsT transcript. Hfq-dependent regulation of HmsP occurs at the transcriptional level while the regulation of HmsT is post-transcriptional and is localized to the 5' untranslated region/proximal coding sequence of the hmsT transcript. Decoupling HmsP from Hfq-based regulation is sufficient to overcome the effects of Δhfq on c-di-GMP and biofilm formation. We propose that Y. pestis utilizes Hfq to link c-di-GMP levels to environmental conditions and that the disregulation of c-di-GMP turnover in the absence of Hfq may contribute to the severe attenuation of Y. pestis lacking this RNA chaperone in animal models of plague. © 2012 Blackwell Publishing Ltd.

Developing a Patient Care Co-ordination Centre in Trafford, England: lessons from the International Foundation for Integrated Care (IFIC/Advancing Quality Alliance integrated care fellowship experience

Directory of Open Access Journals (Sweden)

Michael Gregory

2015-05-01

Full Text Available The NHS and Social Care in England are facing one of the biggest financial challenges for a generation. Commissioners and providers need to work on collaborative schemes to manage the increasing demand on health and social care within a period of financial constraint. Different forms of care co-ordination have been developed at different levels across the world.In the north-west of England, the Trafford health and social care economy have been working through a competitive dialogue process with industry to develop an innovative and dynamic solution to deliver seamless co-ordination for all patients and service users. The strategy is to develop a new Patient Care Co-ordination Centre, which will be responsible for the delivery of co-ordinated, quality care. The Patient Care Co-ordination Centre will work at clinical, service, functional and community levels across multiple providers covering risk stratification, preventative, elective and unscheduled care.I am the clinical lead for the Patient Care Co-ordination Centre and during my year as an Advancing Quality Alliance Integrated Care Fellow, I have had the opportunity to study examples of care coordination from UK and international sites. The learning from these visits has been assimilated into the design process of the Patient Care Co-ordination Centre.

Developing a Patient Care Co-ordination Centre in Trafford, England: lessons from the International Foundation for Integrated Care (IFIC)/Advancing Quality Alliance integrated care fellowship experience.

Science.gov (United States)

Gregory, Michael

2015-01-01

The NHS and Social Care in England are facing one of the biggest financial challenges for a generation. Commissioners and providers need to work on collaborative schemes to manage the increasing demand on health and social care within a period of financial constraint. Different forms of care co-ordination have been developed at different levels across the world. In the north-west of England, the Trafford health and social care economy have been working through a competitive dialogue process with industry to develop an innovative and dynamic solution to deliver seamless co-ordination for all patients and service users. The strategy is to develop a new Patient Care Co-ordination Centre, which will be responsible for the delivery of co-ordinated, quality care. The Patient Care Co-ordination Centre will work at clinical, service, functional and community levels across multiple providers covering risk stratification, preventative, elective and unscheduled care. I am the clinical lead for the Patient Care Co-ordination Centre and during my year as an Advancing Quality Alliance Integrated Care Fellow, I have had the opportunity to study examples of care coordination from UK and international sites. The learning from these visits has been assimilated into the design process of the Patient Care Co-ordination Centre.

Developing a Patient Care Co-ordination Centre in Trafford, England: lessons from the International Foundation for Integrated Care (IFIC/Advancing Quality Alliance integrated care fellowship experience

Directory of Open Access Journals (Sweden)

Michael Gregory

2015-05-01

Full Text Available The NHS and Social Care in England are facing one of the biggest financial challenges for a generation. Commissioners and providers need to work on collaborative schemes to manage the increasing demand on health and social care within a period of financial constraint. Different forms of care co-ordination have been developed at different levels across the world. In the north-west of England, the Trafford health and social care economy have been working through a competitive dialogue process with industry to develop an innovative and dynamic solution to deliver seamless co-ordination for all patients and service users. The strategy is to develop a new Patient Care Co-ordination Centre, which will be responsible for the delivery of co-ordinated, quality care. The Patient Care Co-ordination Centre will work at clinical, service, functional and community levels across multiple providers covering risk stratification, preventative, elective and unscheduled care. I am the clinical lead for the Patient Care Co-ordination Centre and during my year as an Advancing Quality Alliance Integrated Care Fellow, I have had the opportunity to study examples of care coordination from UK and international sites. The learning from these visits has been assimilated into the design process of the Patient Care Co-ordination Centre.

Copying you copying me: interpersonal motor co-ordination influences automatic imitation.

Directory of Open Access Journals (Sweden)

Daniel Joel Shaw

Full Text Available Moving in a co-ordinated fashion with another individual changes our behaviour towards them; we tend to like them more, find them more attractive, and are more willing to co-operate with them. It is generally assumed that this effect on behaviour results from alterations in representations of self and others. Specifically, through neurophysiological perception-action matching mechanisms, interpersonal motor co-ordination (IMC is believed to forge a neural coupling between actor and observer, which serves to blur boundaries in conceptual self-other representations and causes positive views of the self to be projected onto others. An investigation into this potential neural mechanism is lacking, however. Moreover, the specific components of IMC that might influence this mechanism have not yet been specified. In the present study we exploited a robust behavioural phenomenon--automatic imitation--to assess the degree to which IMC influences neural action observation-execution matching mechanisms. This revealed that automatic imitation is reduced when the actions of another individual are perceived to be synchronised in time, but are spatially incongruent, with our own. We interpret our findings as evidence that IMC does indeed exert an effect on neural perception-action matching mechanisms, but this serves to promote better self-other distinction. Our findings demonstrate that further investigation is required to understand the complex relationship between neural perception-action coupling, conceptual self-other representations, and social behaviour.

Lipid binding to cytoglobin leads to a change in haem co-ordination: a role for cytoglobin in lipid signalling of oxidative stress.

Science.gov (United States)

Reeder, Brandon J; Svistunenko, Dimitri A; Wilson, Michael T

2011-03-15

Cytoglobin is a recently discovered hexa-co-ordinate haemoglobin that does not appear to function as a classical oxygen-binding protein. Its function is unknown and studies on the effects of changes in its expression have not decisively determined its role within the cell. In the present paper, we report that the protein is transformed from hexa-co-ordinate to penta-co-ordinate on binding a lipid molecule. This transformation occurs with the ferric oxidation state of the protein, but not the ferrous state, indicating that this process only occurs under an oxidative environment and may thus be related to redox-linked cell signalling mechanisms. Oleate binds to the protein in a 1:1 stoichiometry and with high affinity (K(d)=0.7 μM); however, stopped-flow kinetic measurements yield a K(d) value of 110 μM. The discrepancy between these K(d) values may be rationalized by recognizing that cytoglobin is a disulfide-linked dimer and invoking co-operativity in oleate binding. The lipid-induced transformation of cytoglobin from hexa-co-ordinate to penta-co-ordinate does not occur with similar hexa-co-ordinate haemoglobins such as neuroglobin, and therefore appears to be a unique property of cytoglobin among the haemoglobin superfamily. The lipid-derived transformation may explain why cytoglobin has enhanced peroxidatic activity, converting lipids into various oxidized products, a property virtually absent from neuroglobin and much decreased in myoglobin. We propose that the binding of ferric cytoglobin to lipids and their subsequent transformation may be integral to the physiological function of cytoglobin, generating cell signalling lipid molecules under an oxidative environment.

Ordinal convolutional neural networks for predicting RDoC positive valence psychiatric symptom severity scores.

Science.gov (United States)

Rios, Anthony; Kavuluru, Ramakanth

2017-11-01

The CEGS N-GRID 2016 Shared Task in Clinical Natural Language Processing (NLP) provided a set of 1000 neuropsychiatric notes to participants as part of a competition to predict psychiatric symptom severity scores. This paper summarizes our methods, results, and experiences based on our participation in the second track of the shared task. Classical methods of text classification usually fall into one of three problem types: binary, multi-class, and multi-label classification. In this effort, we study ordinal regression problems with text data where misclassifications are penalized differently based on how far apart the ground truth and model predictions are on the ordinal scale. Specifically, we present our entries (methods and results) in the N-GRID shared task in predicting research domain criteria (RDoC) positive valence ordinal symptom severity scores (absent, mild, moderate, and severe) from psychiatric notes. We propose a novel convolutional neural network (CNN) model designed to handle ordinal regression tasks on psychiatric notes. Broadly speaking, our model combines an ordinal loss function, a CNN, and conventional feature engineering (wide features) into a single model which is learned end-to-end. Given interpretability is an important concern with nonlinear models, we apply a recent approach called locally interpretable model-agnostic explanation (LIME) to identify important words that lead to instance specific predictions. Our best model entered into the shared task placed third among 24 teams and scored a macro mean absolute error (MMAE) based normalized score (100·(1-MMAE)) of 83.86. Since the competition, we improved our score (using basic ensembling) to 85.55, comparable with the winning shared task entry. Applying LIME to model predictions, we demonstrate the feasibility of instance specific prediction interpretation by identifying words that led to a particular decision. In this paper, we present a method that successfully uses wide features and

Nuclear Safety Co-Ordination within Oak Ridge Operations Facilities

Energy Technology Data Exchange (ETDEWEB)

Johnson, W. A.; Pryor, W. A. [Research and Development Division, United States Atomic Energy Commission, Oak Ridge, TN (United States)

1966-05-15

The Oak Ridge Operations Office of the USAEC has within its jurisdiction multiple contractors and facilities for research and for the production of fissile materials for the atomic energy programme. Among these facilities are gaseous diffusion plants for the production of {sup 235}U-enriched uranium hexafluoride, plants for the fabrication of special components and fuel for research and production reactors, and laboratories for pilot plant studies and basic research in nuclear technology. One research laboratory is also actively engaged in criticality experimental programmes and has been a major contributor of criticality data for safety applications. These diversified programmes include the processing, fabrication and transport of practically all forms and isotopic enrichments of uranium in quantities commensurate with both laboratory and volume production requirements. Consequently, adequate nuclear safety control with reasonable economy for operations of this magnitude demands not only co-ordination and liaison between contractor and USAEC staffs, but a continuing reappraisal of safety applications in light of the most advanced information. This report outlines the role of the Oak Ridge Operations Office in these pursuits and describes as examples some specific problems in which this office co-ordinated actions necessary for their resolution. Other examples are given of parametric and procedural applications in plant processes and fissile shipments emphasizing the use of recent experimental or calculated data. These examples involve the use of mass and geometric variables, neutron absorbers and moderation control. Departures from limits specified in existing nuclear safety guides are made to advantage in light of new data, special equipment design, contingencies and acceptable risks. (author)

First research co-ordination meeting of the co-ordinated research programme on development of kits for radioimmunometric assays for tumour markers. Summary report

International Nuclear Information System (INIS)

1997-01-01

Cancer is one of the major reasons for mortality and a great deal of research goes on in many areas related to cancer all through the world. The concept of 'tumor markers' has greatly aided the management of cancer, especially for follow up of the treated patients. Immunoassays that are used for measurement of sub-picomolar quantities of biomolecules such as hormones have been developed for the measurement of tumor markers too and these are widely used for monitoring the patients. The current co-ordinated research program on 'Development of Immunometric Assays for the Tumor Makers: PSA, free PSA and TPS' was born out of the advise from a group of specialists from the field oncology and nuclear medicine who met to discuss initially (Advisory Group Meeting, Colombo, August 1996) to identify the most appropriate markers and later (Consultants' Meeting, Glasgow, 21-25 April 1997) to identify the details of the procedure to follow. The first Research Co-ordination Meeting of this group was held in Vienna from 9-12 December 1997 to review the plans of each participant and the steps to be taken to realize the goal of this CRP. The meeting was attended by participants from the ten laboratories. The meeting discussed all salient aspects of the IRMA development for PSA and TPS. The modalities of working out the plans were thoroughly considered and the key inputs for the program to take off were identified. In conclusion, all the nine contract holding participants would develop the IRMAs for PSA (free and total) and TPS (Uruguay)

Nuclear techniques for toxic elements in foodstuffs. Report on an IAEA co-ordinated research programme

International Nuclear Information System (INIS)

1994-01-01

The document includes 10 final reports on the IAEA Co-ordinated Research Programme on Nuclear Techniques for Toxic Elements in Foodstuffs. A separate abstract was prepared for each report. Refs, figs and tabs

Nuclear techniques for toxic elements in foodstuffs. Report on an IAEA co-ordinated research programme

Energy Technology Data Exchange (ETDEWEB)

NONE

1994-12-31

The document includes 10 final reports on the IAEA Co-ordinated Research Programme on Nuclear Techniques for Toxic Elements in Foodstuffs. A separate abstract was prepared for each report. Refs, figs and tabs.

Nuclear techniques to assess irrigation schedules for field crops. Results of a co-ordinated research programme

Energy Technology Data Exchange (ETDEWEB)

NONE

1996-06-01

This TECDOC summarizes the results of a Co-ordinated Research Programme on The Use of Nuclear and Related Techniques in Assessment of Irrigation Schedules of Field Crops to Increase Effective Use of Water in Irrigation Projects. The programme was carried out between 1990 and 1995 through the technical co-ordination of the Soil Fertility, Irrigation and Crop Production Section of the Joint FAO/IAEA Division of Nuclear Techniques in Food and Agriculture of the International Atomic Energy Agency. Fourteen Member States of the IAEA and FAO carried out a series of field experiments aimed at improving irrigation water use efficiency through a type of irrigation scheduling known as deficit irrigation. Refs, figs, tabs.

Nuclear techniques to assess irrigation schedules for field crops. Results of a co-ordinated research programme

International Nuclear Information System (INIS)

1996-06-01

This TECDOC summarizes the results of a Co-ordinated Research Programme on The Use of Nuclear and Related Techniques in Assessment of Irrigation Schedules of Field Crops to Increase Effective Use of Water in Irrigation Projects. The programme was carried out between 1990 and 1995 through the technical co-ordination of the Soil Fertility, Irrigation and Crop Production Section of the Joint FAO/IAEA Division of Nuclear Techniques in Food and Agriculture of the International Atomic Energy Agency. Fourteen Member States of the IAEA and FAO carried out a series of field experiments aimed at improving irrigation water use efficiency through a type of irrigation scheduling known as deficit irrigation. Refs, figs, tabs

Co-ordinated voltage control of DFIG wind turbines in uninterrupted operation during grid faults

DEFF Research Database (Denmark)

Hansen, Anca Daniela; Michalke, G.; Sørensen, Poul Ejnar

2007-01-01

Emphasis in this article is on the design of a co-ordinated voltage control strategy for doubly fed induction generator (DFIG) wind turbines that enhances their capability to provide grid support during grid faults. In contrast to its very good performance in normal operation, the DFIG wind turbine...... concept is quite sensitive to grid faults and requires special power converter protection. The fault ride-through and grid support capabilities of the DFIG address therefore primarily the design of DFIG wind turbine control with special focus on power converter protection and voltage control issues....... A voltage control strategy is designed and implemented in this article, based on the idea that both converters of the DFIG (i.e. rotor-side converter and grid-side converter) participate in the grid voltage control in a co-ordinated manner. By default the grid voltage is controlled by the rotor...

Spherical polar co-ordinate calculations of induced fields in the retina and head for applied magnetic fields at 50 Hz.

Science.gov (United States)

Dimbylow, Peter

2011-07-21

This paper sets out to explore the effects of voxel resolution, from 2 mm down to 0.1 mm for Cartesian co-ordinates and the differences between Cartesian and spherical polar co-ordinates for a standardized test-bed model of the eye. This model was taken from the work of Yoriyaz et al (2005 Radiat. Prot. Dosim. 115 316-9) who have developed a detailed geometric description of the eye including choroid, retina, sclera, lens, cornea, anterior chamber, vitreous humour and optic nerve for ophthalmic brachytherapy. The spherical co-ordinate model has radial and angular steplengths of 0.1 mm and 0.25°, respectively. The current density averaged over 1 cm(2) and the 99th percentile value of the induced electric field have been calculated in the retina and central nervous system for uniform magnetic fields. The Cartesian co-ordinate calculations proceed in a sequence of grids at 2, 1, 0.5, 0.2 and 0.1 mm resolution with the potentials from the previous calculation at a coarser grid providing the boundary conditions on the finer grid. The 0.2 mm grid provides the boundary conditions for the spherical polar calculations. Comparisons are made with the International Commission on Non-Ionizing Radiation Protection reference levels.

Spherical polar co-ordinate calculations of induced fields in the retina and head for applied magnetic fields at 50 Hz

International Nuclear Information System (INIS)

Dimbylow, Peter

2011-01-01

This paper sets out to explore the effects of voxel resolution, from 2 mm down to 0.1 mm for Cartesian co-ordinates and the differences between Cartesian and spherical polar co-ordinates for a standardized test-bed model of the eye. This model was taken from the work of Yoriyaz et al (2005 Radiat. Prot. Dosim. 115 316-9) who have developed a detailed geometric description of the eye including choroid, retina, sclera, lens, cornea, anterior chamber, vitreous humour and optic nerve for ophthalmic brachytherapy. The spherical co-ordinate model has radial and angular steplengths of 0.1 mm and 0.25 0 , respectively. The current density averaged over 1 cm 2 and the 99th percentile value of the induced electric field have been calculated in the retina and central nervous system for uniform magnetic fields. The Cartesian co-ordinate calculations proceed in a sequence of grids at 2, 1, 0.5, 0.2 and 0.1 mm resolution with the potentials from the previous calculation at a coarser grid providing the boundary conditions on the finer grid. The 0.2 mm grid provides the boundary conditions for the spherical polar calculations. Comparisons are made with the International Commission on Non-Ionizing Radiation Protection reference levels.

Co-ordinate regulation of genes involved in storage lipid mobilization in Arabidopsis thaliana.

Science.gov (United States)

Rylott, E L; Hooks, M A; Graham, I A

2001-05-01

Molecular genetic approaches in the model plant Arabidopsis thaliana (Col0) are shedding new light on the role and control of the pathways associated with the mobilization of lipid reserves during oilseed germination and post-germinative growth. Numerous independent studies have reported on the expression of individual genes encoding enzymes from the three major pathways: beta-oxidation, the glyoxylate cycle and gluconeogenesis. However, a single comprehensive study of representative genes and enzymes from the different pathways in a single plant species has not been done. Here we present results from Arabidopsis that demonstrate the co-ordinate regulation of gene expression and enzyme activities for the acyl-CoA oxidase- and 3-ketoacyl-CoA thiolase-mediated steps of beta-oxidation, the isocitrate lyase and malate synthase steps of the glyoxylate cycle and the phosphoenolpyruvate carboxykinase step of gluconeogenesis. The mRNA abundance and enzyme activities increase to a peak at stage 2, 48 h after the onset of seed germination, and decline thereafter either to undetectable levels (for malate synthase and isocitrate lyase) or low basal levels (for the genes of beta-oxidation and gluconeogenesis). The co-ordinate induction of all these genes at the onset of germination raises the possibility that a global regulatory mechanism operates to induce the expression of genes associated with the mobilization of storage reserves during the heterotrophic growth period.

Educating Leaders for Social Justice: The Case of Special Educational Needs Co-Ordinators

Science.gov (United States)

Liasidou, Anastasia; Svensson, Cathy

2014-01-01

In the light of policy imperatives to initiate and maintain inclusive education reforms, the role of special educational needs co-ordinators (SENCOs) in England and Wales should be reconceptualised with a view to their leading school reforms commensurate with the principles of an inclusive discourse. The article concentrates on the social justice…

3. IAEA research co-ordination meeting on atomic and plasma-wall interaction data for fusion reactor divertor modeling. Summary report

International Nuclear Information System (INIS)

Janev, R.K.

1999-04-01

A brief description of the proceedings and the conclusions of the 3rd Research Co-ordination Meeting on 'Atomic and Plasma-Wall Interaction Data for Fusion Reactor Divertor Modeling', held on March 8-9, 1999, at the IAEA Headquarters in Vienna, Austria, is provided. The reports on the activities within the individual projects pertinent to the IAEA Co-ordinated Research program with the same title are given as appendix to the present report. (author)

Organization of the ITER Co-ordinated Technical Activities International Team

International Nuclear Information System (INIS)

2001-01-01

At its meeting in Toronto on 7 November 2001, the ITER Co-ordinated Technical Activities (CTA) project board took note of the organizational arrangements for the CTA International Team at the Garching and Naka joint work sites. The organization chart of the team remains almost unchanged from that of the ITER Engineering Design Activities (EDA). However, there is no special division responsible for plasma and field control. Activities in plasma control will be taken over by the Physics Unit. This newsletter also includes the ITER CTA International Team structure

Use of isotope techniques in lake dynamics investigations. Proceedings of a final research co-ordination meeting

International Nuclear Information System (INIS)

2001-03-01

The Co-ordinated Research Programme (CRP) on the Use of Isotope Techniques in Lake Dynamics Investigations was launched with the aim of assessing the potential of environmental isotope techniques in studying the dynamics of surface water bodies and related problems such as: dynamics of solutes; sediment focusing; establishment of water balance components; vulnerability to pollution. The CRP enabled a number of isotope and geochemical studies to be carried out on small and large water bodies, with the general aim of understanding of the dynamics of these systems under the growing anthropogenic influence. This publication is a compilation of the papers presented at the final Research Co-ordination Meeting (RCM) held in Rehovot, Israel, from 10 to 13 March 1997. Individual contributions have been indexed separately

2. IAEA research co-ordination meeting on 'Data for molecular processes in edge plasmas'. Summary report

International Nuclear Information System (INIS)

Clark, R.E.H.

2004-05-01

This report briefly describes the proceedings, conclusions and recommendations of the 2nd Research Co-ordination Meeting (RCM) of the Co-ordinated Research Project (CRP) on 'Data for Molecular Processes in Edge Plasmas' held on 12-14 May 2003 at IAEA Headquarters, Vienna. During the course of the meeting the progress achieved to data was thoroughly reviewed. During the course of the meeting many areas in need of further research were noted. In addition there are specific important processes with lingering discrepancies between theory and experiment. Strong collaborations built during the course of this CRP have the potential to address these issues. Therefore, one outcome of the RCM was a detailed proposal to extend the CRP for an additional year with a final RCM in 2004. (author)

Lack of co-ordinate expression of the alpha1(I) and alpha1(III) procollagen genes in fibroblast clonal cultures.

Science.gov (United States)

Yamaguchi, Y; Crane, S; Zhou, L; Ochoa, S M; Falanga, V

2000-12-01

Several extracellular matrix genes, most notably alpha1(I) and alpha1(III) procollagen, are reported to be co-ordinately expressed in cultures of dermal fibroblasts. However, it remains unclear whether the expression of these genes is truly co-ordinate or whether it may be the result of averaging the phenotypic expression of different fibroblast subpopulations present within each culture. Objectives To determine by Northern analysis the correlation between alpha1(I) and alpha1(III) procollagen mRNA levels in clonal populations of human dermal fibroblasts. As previously described, clonal cultures were derived from parent strains of human dermal fibroblasts by a microscopically controlled dilution technique and by stimulation of single cells with low oxygen tension in the early phases of clonal growth. In agreement with previous reports, we found that baseline steady-state levels of alpha1(I) procollagen mRNA were co-ordinately regulated with the alpha1(III) procollagen mRNA in 26 parent strains (r = 0. 9003; P ordinate regulation observed in non-clonal cultures, suggesting that these two genes operate under different sets of regulatory controls. This clonal heterogeneity may provide additional flexibility to the process of tissue repair and fibroblast clonal expansion.

Associations of motor co-ordination and attention with motor-perceptual development in 3-year-old preterm and full-term children who needed neonatal intensive care.

Science.gov (United States)

Hemgren, E; Persson, K

2007-01-01

Children who have needed neonatal intensive care (NIC) are considered to be at risk for deficits such as developmental co-ordination disorder and attention-deficit/hyperactivity disorder. By assessing motor-perceptual development, motor co-ordination and attention already at 3 years of age, it might be possible to identify such deficits earlier than they are today. To investigate the motor-perceptual development in a group of 202 NIC children but had no major impairments, to describe associations of deficits in co-ordination and attention with motor-perceptual delays, and to estimate the prevalence of NIC children with combined deficits together with a motor-perceptual delay. Co-ordination and attention in children born very preterm (n = 57), moderately preterm (n = 75) and full-term (n = 70) were observed according to a model for Combined Assessment of Motor Performance and Behaviour while they were assessed using a developmental scale, Motor-Perceptual Development, 0-7 years, MPU. In two out of 14 MPU areas, a larger proportion of very preterm than of moderately preterm and full-term children had marked developmental delay. Overall, the proportion of NIC children having a motor-perceptual delay increased with increasing incoordination and especially increasing lack of attention. Twenty-one (11%) of the NIC children had different motor-perceptual delays combined with pronounced incoordination and pronounced lack of attention. Deficits in co-ordination and attention were associated with motor-perceptual delays in areas important for daily living and development of academic skills. Therefore, to find children at risk for developmental co-ordination disorder and attention-deficit/hyperactivity disorder, assessments of co-ordination and attention should be added to assessments of motor-perceptual development in 3-year-old NIC children.

Transcriptional networks controlling adipocyte differentiation

DEFF Research Database (Denmark)

Siersbæk, R; Mandrup, Susanne

2011-01-01

" of the transcription factor networks operating at specific time points during adipogenesis. Using such global "snapshots," we have demonstrated that dramatic remodeling of the chromatin template occurs within the first few hours following adipogenic stimulation and that many of the early transcription factors bind...... in a cooperative fashion to transcription factor hotspots. Such hotspots are likely to represent key chromatin nodes, where many adipogenic signaling pathways converge to drive the adipogenic transcriptional reprogramming....

Elucidating MicroRNA Regulatory Networks Using Transcriptional, Post-transcriptional, and Histone Modification Measurements

Directory of Open Access Journals (Sweden)

Sara J.C. Gosline

2016-01-01

Full Text Available MicroRNAs (miRNAs regulate diverse biological processes by repressing mRNAs, but their modest effects on direct targets, together with their participation in larger regulatory networks, make it challenging to delineate miRNA-mediated effects. Here, we describe an approach to characterizing miRNA-regulatory networks by systematically profiling transcriptional, post-transcriptional and epigenetic activity in a pair of isogenic murine fibroblast cell lines with and without Dicer expression. By RNA sequencing (RNA-seq and CLIP (crosslinking followed by immunoprecipitation sequencing (CLIP-seq, we found that most of the changes induced by global miRNA loss occur at the level of transcription. We then introduced a network modeling approach that integrated these data with epigenetic data to identify specific miRNA-regulated transcription factors that explain the impact of miRNA perturbation on gene expression. In total, we demonstrate that combining multiple genome-wide datasets spanning diverse regulatory modes enables accurate delineation of the downstream miRNA-regulated transcriptional network and establishes a model for studying similar networks in other systems.

Transcription regulatory networks analysis using CAGE

KAUST Repository

Tegnér, Jesper N.

2009-10-01

Mapping out cellular networks in general and transcriptional networks in particular has proved to be a bottle-neck hampering our understanding of biological processes. Integrative approaches fusing computational and experimental technologies for decoding transcriptional networks at a high level of resolution is therefore of uttermost importance. Yet, this is challenging since the control of gene expression in eukaryotes is a complex multi-level process influenced by several epigenetic factors and the fine interplay between regulatory proteins and the promoter structure governing the combinatorial regulation of gene expression. In this chapter we review how the CAGE data can be integrated with other measurements such as expression, physical interactions and computational prediction of regulatory motifs, which together can provide a genome-wide picture of eukaryotic transcriptional regulatory networks at a new level of resolution. © 2010 by Pan Stanford Publishing Pte. Ltd. All rights reserved.

Radiation doses in diagnostic radiology and methods for dose reduction. Report of a co-ordinated research programme (1991-1993)

Energy Technology Data Exchange (ETDEWEB)

NONE

1995-04-01

It is well recognized that diagnostic radiology is the largest contributor to the collective dose from all man-made sources of radiation. Large differences in radiation doses from the same procedures among different X ray rooms have led to the conclusion that there is a potential for dose reduction. A Co-ordinated Research Programme on Radiation Doses in Diagnostic Radiology and Methods for Dose Reduction, involving Member States with different degrees of development, was launched by the IAEA in co-operation with the CEC. This report summarizes the results of the second and final Research Co-ordination Meeting held in Vienna from 4 to 8 October 1993. 22 refs, 6 figs and tabs.

Radiation doses in diagnostic radiology and methods for dose reduction. Report of a co-ordinated research programme (1991-1993)

International Nuclear Information System (INIS)

1995-04-01

It is well recognized that diagnostic radiology is the largest contributor to the collective dose from all man-made sources of radiation. Large differences in radiation doses from the same procedures among different X ray rooms have led to the conclusion that there is a potential for dose reduction. A Co-ordinated Research Programme on Radiation Doses in Diagnostic Radiology and Methods for Dose Reduction, involving Member States with different degrees of development, was launched by the IAEA in co-operation with the CEC. This report summarizes the results of the second and final Research Co-ordination Meeting held in Vienna from 4 to 8 October 1993. 22 refs, 6 figs and tabs

Co-ordinated research programme on nuclear techniques for toxic elements in foodstuffs

International Nuclear Information System (INIS)

1990-01-01

This Co-ordinated Research Programme (CRP) was started by the Agency in 1985, within the framework of the Regional Cooperative Agreement for Research, Development and Training Related to Nuclear Science and Technology in the Asia and Pacific Region (RCA). Its main purpose has been to obtain comparative data on existing elemental concentrations of potentially toxic elements in foodstuffs in various Asian countries. The elements to be studied include the potentially most toxic trace elements (As, Cd, Hg, Pb, Se) as well as others of relevance to national monitoring programmes, such as Br, Cr, Cu, Fe, I, Mn, Sb, Tl, and Zn. An important supplementary purpose of the programme is to help establish analytical expertise for work of this kind in the individual countries. Scientists from several RCA Member States have participated in it, namely from Australia, Bangladesh, China, India, Indonesia, Japan, Malaysia, Pakistan, Thailand, and also from institutes in several countries outside the region, i.e., Argentina, Brazil, Jamaica and The Netherlands. This report summarizes the discussions that took place during the third and final Research Co-ordination Meeting (RCM) for the programme from 20-24 November 1989, in Jakarta, Indonesia. This document includes the progress reports presented by the participants as well as discussions and conclusions drawn from the meeting

2nd (final) IAEA research co-ordination meeting on 'charge exchange cross section data for fusion plasma studies'. Summary report

International Nuclear Information System (INIS)

Clark, R.E.H.

2001-11-01

The proceedings and conclusions of the 2nd Research Co-ordination Meeting on 'Charge Exchange Cross Section Data for Fusion Plasma Studies', held on September 25 and 26, 2000 at the IAEA Headquarters in Vienna, are briefly described. This report includes a summary of the presentations made by the meeting participants and a review of the accomplishments of the Co-ordinated Research Project (CRP). In addition, short summaries from the participants are included indicating the specific research completed in support of this CRP. (author)

Modelling reveals kinetic advantages of co-transcriptional splicing.

Directory of Open Access Journals (Sweden)

Stuart Aitken

2011-10-01

Full Text Available Messenger RNA splicing is an essential and complex process for the removal of intron sequences. Whereas the composition of the splicing machinery is mostly known, the kinetics of splicing, the catalytic activity of splicing factors and the interdependency of transcription, splicing and mRNA 3' end formation are less well understood. We propose a stochastic model of splicing kinetics that explains data obtained from high-resolution kinetic analyses of transcription, splicing and 3' end formation during induction of an intron-containing reporter gene in budding yeast. Modelling reveals co-transcriptional splicing to be the most probable and most efficient splicing pathway for the reporter transcripts, due in part to a positive feedback mechanism for co-transcriptional second step splicing. Model comparison is used to assess the alternative representations of reactions. Modelling also indicates the functional coupling of transcription and splicing, because both the rate of initiation of transcription and the probability that step one of splicing occurs co-transcriptionally are reduced, when the second step of splicing is abolished in a mutant reporter.

Modelling reveals kinetic advantages of co-transcriptional splicing.

Science.gov (United States)

Aitken, Stuart; Alexander, Ross D; Beggs, Jean D

2011-10-01

Messenger RNA splicing is an essential and complex process for the removal of intron sequences. Whereas the composition of the splicing machinery is mostly known, the kinetics of splicing, the catalytic activity of splicing factors and the interdependency of transcription, splicing and mRNA 3' end formation are less well understood. We propose a stochastic model of splicing kinetics that explains data obtained from high-resolution kinetic analyses of transcription, splicing and 3' end formation during induction of an intron-containing reporter gene in budding yeast. Modelling reveals co-transcriptional splicing to be the most probable and most efficient splicing pathway for the reporter transcripts, due in part to a positive feedback mechanism for co-transcriptional second step splicing. Model comparison is used to assess the alternative representations of reactions. Modelling also indicates the functional coupling of transcription and splicing, because both the rate of initiation of transcription and the probability that step one of splicing occurs co-transcriptionally are reduced, when the second step of splicing is abolished in a mutant reporter.

How can the co-ordinate transformation method of beam matching be extended to include separately labelled collimators?

Science.gov (United States)

Morgan-Fletcher, S; McKenzie, A L

1996-03-01

The problem of matching radiation beams was tackled by Siddon in 1980 using co-ordinate transformations. Since then, the need to distinguish between individual collimators in prescriptions of treatment set-up, brought about by the widespread use of 3-D treatment planning systems and asymmetric fields, as well as a reversal of the rotation sense in the turntable co-ordinate system proposed by the International Electrotechnical Commission, have made it necessary to revisit this particular problem. This paper builds upon Siddon's general equations for the particular case of matching beams, and derives expressions for calculating treatment-unit settings which may be used in a computer program without the need to perform matrix manipulation. The expression treat the individual collimator jaws separately.

Co-ordinate decrease in the expression of the mitochondrial genome and nuclear genes for mitochondrial proteins in the lactation-induced mitochondrial hypotrophy of rat brown fat.

Science.gov (United States)

Martin, I; Giralt, M; Viñas, O; Iglesias, R; Mampel, T; Villarroya, F

1995-01-01

The relative abundance of the mitochondrial-encoded mRNAs for cytochrome c oxidase subunit II and NADH dehydrogenase subunit I was lower in brown adipose tissue (BAT) from lactating rats than in virgin controls. This decrease was in parallel with a significant decrease in mitochondrial 16 S rRNA levels and in the relative content of mitochondrial DNA in the tissue. BAT from lactating rats showed lowered mRNA expression of the nuclear-encoded genes for the mitochondrial uncoupling protein, subunit IV of cytochrome c oxidase and the adenine nucleotide translocase isoforms ANT1 and ANT2, whereas mRNA levels for the ATP synthase beta-subunit were unchanged. However, the relative content of this last protein was lower in BAT mitochondria from lactating rats than in virgin controls. It is concluded that lactation-induced mitochondrial hypotrophy in BAT is associated with a co-ordinate decrease in the expression of the mitochondrial genome and nuclear genes for mitochondrial proteins. This decrease is caused by regulatory events acting at different levels, including pre- and post-transcriptional regulation. BAT appears to be a useful model with which to investigate the molecular mechanisms involved in the co-ordination of the expression of the mitochondrial and nuclear genomes during mitochondrial biogenesis. Images Figure 1 Figure 2 PMID:8948428

Co-ordinated research project on validation and application of plants as biomonitors of trace element atmospheric pollution, analysed by nuclear and related techniques. Report on the 1. research co-ordination meeting

Energy Technology Data Exchange (ETDEWEB)

NONE

1999-07-01

Environmental pollution is a cause of ever increasing concern in the world. The UN Conference on Environment and Development (Rio, Brazil, 1992) reaffirmed the importance of protecting the environment within the context of sustainable development. Arising out of this conference, the Rio Agenda 21 declaration called for a number of nationally determined action programmes, with international assistance and co-ordination under 'Capacity 21', concerning environmental monitoring and assessment, including the use of biological markers. Environmental protection and control is a matter of high priority in all developing countries' governmental policies in view of its implications for the welfare of the present and future populations. Therefore it is expected that regional and national organisations responsible for legislation and environmental policy, municipal organisations, which could use the data collected for establishing emission levels, organisations responsible for pollutant emission control and public health-related institutions will benefit from this proposed Co-ordinated Research Project (CRP). The CRP is expected to exploit possibilities of developing and validating tools for using appropriate biomonitors to map the distribution of air pollution over wide areas in developing countries. If successful, this would be a powerful way for developing countries to monitor air pollution.

Co-ordinated research project on validation and application of plants as biomonitors of trace element atmospheric pollution, analysed by nuclear and related techniques. Report on the 1. research co-ordination meeting

International Nuclear Information System (INIS)

1999-01-01

Environmental pollution is a cause of ever increasing concern in the world. The UN Conference on Environment and Development (Rio, Brazil, 1992) reaffirmed the importance of protecting the environment within the context of sustainable development. Arising out of this conference, the Rio Agenda 21 declaration called for a number of nationally determined action programmes, with international assistance and co-ordination under 'Capacity 21', concerning environmental monitoring and assessment, including the use of biological markers. Environmental protection and control is a matter of high priority in all developing countries' governmental policies in view of its implications for the welfare of the present and future populations. Therefore it is expected that regional and national organisations responsible for legislation and environmental policy, municipal organisations, which could use the data collected for establishing emission levels, organisations responsible for pollutant emission control and public health-related institutions will benefit from this proposed Co-ordinated Research Project (CRP). The CRP is expected to exploit possibilities of developing and validating tools for using appropriate biomonitors to map the distribution of air pollution over wide areas in developing countries. If successful, this would be a powerful way for developing countries to monitor air pollution

Co-ordinated research programme on applications of stable isotope tracers in human nutrition research

International Nuclear Information System (INIS)

1989-01-01

This Co-ordinated Research Programme (CRP) was formally established by the Agency in October 1988, and has since then expanded to encompass 13 participants in 13 countries. Its general objective is to help establish competence in the use of stable isotope techniques, particularly in developing countries, and particularly with reference to applications of 2 H, 13 C, 15 N, and 18 O. This report summarizes the discussions that took place during the first Research Co-ordination Meeting (RCM). Working papers (progress reports) presented by the participants are included as annexes together with a preliminary report on the results of a series of intercomparison exercises involving enriched stable isotope reference materials containing 2 H, 13 C, 15 N and 18 O. For the future it was agreed that more work needs to be done to harmonize the analytical techniques being used, and to obtain support for new CRPs relating to human energy expenditure studies in pregnancy, lactation, growth and other conditions, and to studies of nitrogen turnover in relation to malnutrition and liver function. Refs, figs and tabs

A microscopic study of the S band in the generator co-ordinate approach

International Nuclear Information System (INIS)

Wuest, E.; Ansari, A.

1985-04-01

Using particle number and spin projected cranked Hartree-Fock-Bogolubov (CHFB) wave functions in the generator co-ordinate method (GCM) with the cranking frequency as a GC the shortcomings of the usual CHFB theory are removed and the ground as well as the s band are studied simultaneously. In particular, low-spin properties of the s band are discussed for a backbending nucleus 158 Dy. (author)

Production of 99Tcm radiopharmaceuticals for brain, heart and kidney imaging. Final report of a co-ordinated research programme 1991-1994

International Nuclear Information System (INIS)

1995-07-01

The report contains highlights of the achievements of the IAEA Co-ordinated Research programme on Evaluation on the Use of Bulk Reagents for the Production of 99 Tc m Radiopharmaceutical and Kits, the participants' summary reports (Argentina, Chile, Greece, India, Indonesia, Japan, Malaysia, Portugal, Russian Federation, Thailand, Uruguay, United States of America), recommended product protocols for five compounds and the participants' recommendations regarding continued support and further directions of co-ordinated research work. Refs, 6 figs, 8 tabs, 6 schemes

Intercomparison and biokinetic model validation of radionuclide intake assessment. Report of a co-ordinated research project. 1996-1998

International Nuclear Information System (INIS)

1999-03-01

This TECDOC presents the results of a Co-ordinated Research Project (CRP) on Intercomparison and Biokinetic Model Validation of Radionuclide Intake Assessment, including the conclusions of a Research Co-ordination Meeting held from 6 to 8 July 1998. The present CRP on Intercomparison and Biokinetic Model Validation of Radionuclide Intake Assessment is part of the activities of the IAEA's Occupational Protection programme. The objective of this programme is to promote an internationally harmonized approach for optimizing occupational radiation protection through: the development of guides, within the IAEA's activities for establishing standards for radiation protection, for restricting radiation exposures in the workplace and for applying current occupational radiation protection techniques; and the promotion of application of these guidelines

Controllability analysis of transcriptional regulatory networks reveals circular control patterns among transcription factors

DEFF Research Database (Denmark)

Österlund, Tobias; Bordel, Sergio; Nielsen, Jens

2015-01-01

% for the human network. The high controllability (low number of drivers needed to control the system) in yeast, mouse and human is due to the presence of internal loops in their regulatory networks where the TFs regulate each other in a circular fashion. We refer to these internal loops as circular control...... motifs (CCM). The E. coli transcriptional regulatory network, which does not have any CCMs, shows a hierarchical structure of the transcriptional regulatory network in contrast to the eukaryal networks. The presence of CCMs also has influence on the stability of these networks, as the presence of cycles...

Selection Shapes Transcriptional Logic and Regulatory Specialization in Genetic Networks.

Science.gov (United States)

Fogelmark, Karl; Peterson, Carsten; Troein, Carl

2016-01-01

Living organisms need to regulate their gene expression in response to environmental signals and internal cues. This is a computational task where genes act as logic gates that connect to form transcriptional networks, which are shaped at all scales by evolution. Large-scale mutations such as gene duplications and deletions add and remove network components, whereas smaller mutations alter the connections between them. Selection determines what mutations are accepted, but its importance for shaping the resulting networks has been debated. To investigate the effects of selection in the shaping of transcriptional networks, we derive transcriptional logic from a combinatorially powerful yet tractable model of the binding between DNA and transcription factors. By evolving the resulting networks based on their ability to function as either a simple decision system or a circadian clock, we obtain information on the regulation and logic rules encoded in functional transcriptional networks. Comparisons are made between networks evolved for different functions, as well as with structurally equivalent but non-functional (neutrally evolved) networks, and predictions are validated against the transcriptional network of E. coli. We find that the logic rules governing gene expression depend on the function performed by the network. Unlike the decision systems, the circadian clocks show strong cooperative binding and negative regulation, which achieves tight temporal control of gene expression. Furthermore, we find that transcription factors act preferentially as either activators or repressors, both when binding multiple sites for a single target gene and globally in the transcriptional networks. This separation into positive and negative regulators requires gene duplications, which highlights the interplay between mutation and selection in shaping the transcriptional networks.

2. IAEA research co-ordination meeting on 'Atomic and molecular data for fusion plasma diagnostics'. Summary report

International Nuclear Information System (INIS)

Clark, R.E.H.

2004-05-01

This report briefly describes the proceedings, conclusions and recommendations of the 2nd Research Co-ordination Meeting (RCM) of the Co-ordinated Research Project (CRP) on 'Atomic and Molecular Data for Fusion Plasma Diagnostics' held on 16-18 June 2003 at IAEA Headquarters, Vienna. During the course of the meeting the progress achieved to data was thoroughly reviewed. It was noted that during the course of the research several new areas of data needs were revealed. During detailed discussions proposals from all participants on ongoing data needs indicated that a one year extension of the CRP would be extremely valuable with an additional RCM to be held in 2004. A specific proposal for such an extension was formulated along with the summary of the results achieved to date. (author)

Radioactive waste management in Spain: co-ordination and projects

International Nuclear Information System (INIS)

2007-01-01

The sixth workshop of the OECD/NEA Forum on Stakeholder Confidence (FSC) was hosted by ENRESA, the Spanish agency responsible for the management of radioactive waste and the dismantling of nuclear power plants, and the Council of Nuclear Safety (CSN), with the support of the Association of Spanish Municipalities in Areas Surrounding Nuclear Power Plants (AMAC). The workshop took place at L'Hospitalet de l'Infant, Catalonia, Spain, on 21-23 November 2005. At this workshop, Spanish stakeholders and delegates from 14 countries discussed current co-ordination of radioactive waste management decision making in Spain. Findings were shared from Cowam-Spain, a co-operative research project on the involvement of local stakeholders, the relationship between national and local levels of decision making, and the long-term sustainability of decisions regarding the siting of a centralized interim storage facility for high-level waste. These proceedings include the workshop presentations and discussions, as well as the rapporteurs' reflections on what was learned about policy making and participative decision making. (author)

Characterization of WRKY co-regulatory networks in rice and Arabidopsis

Directory of Open Access Journals (Sweden)

Kikuchi Shoshi

2009-09-01

Full Text Available Abstract Background The WRKY transcription factor gene family has a very ancient origin and has undergone extensive duplications in the plant kingdom. Several studies have pointed out their involvement in a range of biological processes, revealing that a large number of WRKY genes are transcriptionally regulated under conditions of biotic and/or abiotic stress. To investigate the existence of WRKY co-regulatory networks in plants, a whole gene family WRKYs expression study was carried out in rice (Oryza sativa. This analysis was extended to Arabidopsis thaliana taking advantage of an extensive repository of gene expression data. Results The presented results suggested that 24 members of the rice WRKY gene family (22% of the total were differentially-regulated in response to at least one of the stress conditions tested. We defined the existence of nine OsWRKY gene clusters comprising both phylogenetically related and unrelated genes that were significantly co-expressed, suggesting that specific sets of WRKY genes might act in co-regulatory networks. This hypothesis was tested by Pearson Correlation Coefficient analysis of the Arabidopsis WRKY gene family in a large set of Affymetrix microarray experiments. AtWRKYs were found to belong to two main co-regulatory networks (COR-A, COR-B and two smaller ones (COR-C and COR-D, all including genes belonging to distinct phylogenetic groups. The COR-A network contained several AtWRKY genes known to be involved mostly in response to pathogens, whose physical and/or genetic interaction was experimentally proven. We also showed that specific co-regulatory networks were conserved between the two model species by identifying Arabidopsis orthologs of the co-expressed OsWRKY genes. Conclusion In this work we identified sets of co-expressed WRKY genes in both rice and Arabidopsis that are functionally likely to cooperate in the same signal transduction pathways. We propose that, making use of data from co

Nuclear material accounting and control: Co-ordinating assistance to newly independent States

International Nuclear Information System (INIS)

Thorstensen, S.

1995-01-01

This article outlines work under way among the IAEA, its Member States, and the Newly Independent States (NIS) relating to the establishment and development in the NIS of State Systems of Accounting and Control (SSACs) of nuclear material. It describes IAEA activities in the NIS, including fact-finding missions at technical visits, the successful attempts to find donor States providing voluntary funding and expertise, and the co-ordination of technical support between the IAEA and the donor States. 3 tabs

Report of the first research co-ordination meeting on the co-ordinated research programme: Rapid instrumental and separation methods for monitoring radionuclides in food and environmental samples, Central Laboratory for Radiological Protection, Warsaw, Poland 4-8 September 1989

International Nuclear Information System (INIS)

1989-09-01

Concern about the release of radionuclides to the environment, especially to the foodchain, has been heightened by recent nuclear incidents. The assessment of any release of radioactivity demands rapid, reliable and practical techniques. In the intermediate and late post-accident period, where the interest is in food control rather then evacuation and sheltering, rapid methods would be useful for screening purposes as well as providing timely information and easing sample workload minimizing sample overloads. In the first research co-ordination meeting on the co-ordinated research program ''Rapid.... samples'', the specifications for the time required for sample preparation, separation, and analysis and the accuracy desired were outlined. Considerable attention was given to the need to develop rapid method for sample preparation and dissolution. Emphasis was placed on achieving the development of rapid methods with the minimum sacrifice in reliability, practicality and economy

Co-ordinate variations in methylmalonyl-CoA mutase and methionine synthase, and the cobalamin cofactors in human glioma cells during nitrous oxide exposure and the subsequent recovery phase.

Science.gov (United States)

Riedel, B; Fiskerstrand, T; Refsum, H; Ueland, P M

1999-07-01

We investigated the co-ordinate variations of the two cobalamin (Cbl)-dependent enzymes, methionine synthase (MS) and methylmalonyl-CoA mutase (MCM), and measured the levels of their respective cofactors, methylcobalamin (CH3Cbl) and adenosylcobalamin (AdoCbl) in cultured human glioma cells during nitrous oxide exposure and during a subsequent recovery period of culture in a nitrous oxide-free atmosphere (air). In agreement with published data, MS as the primary target of nitrous oxide was inactivated rapidly (initial rate of 0.06 h(-1)), followed by reduction of CH3Cbl (to ordinate distribution of Cbl cofactors during depletion and repletion.

Co-ordinated research programme on operator support systems in nuclear power plants. Working material

International Nuclear Information System (INIS)

1993-01-01

In September 1991 the Co-ordinated Research Programme (CRP) on ''Operator Support Systems (OSSs) in Nuclear Power Plants'' was approved in the framework of the Project ''Man-Machine Interface Studies''. The main objective of the programme is to provide guidance and technology transfer in the development and implementation of OSSs. This includes the experience with man-machine interfaces and closely related issues such as control and instrumentation, the use of computers, and operator qualification. The first Co-ordinated Research Meeting held in Vienna, 13-16 October 1992, prepared a summary report which defined the tasks and the responsibilities of the CRP participants. A time schedule and future actions were also agreed upon at this meeting. The second meeting was held in Budapest, Hungary, from 5 to 8 October 1993 and was sponsored by the KFKI Atomic Energy Research Institute. The meeting reviewed the progress of the tasks defined by the first meeting, considered reports on national activities in the subject area, and agreed on time schedule and future actions. The present volume contains: (1) report prepared by the CRP meeting, (2) reports presented by the national delegates, and (3) CRP background and working plan. Refs, figs and tabs

Irradiation of fuels and materials in the Jules Horowitz reactor: The 6th European Union JHR co-ordination action (JHR-CA)

International Nuclear Information System (INIS)

Iracane, Daniel; Parrat, Daniel

2005-01-01

The Fermine thematic network in the 5th FP pointed out the need for a new MTR facility in Europe to answer the continuous need of irradiation capabilities for fission power reactors and fusion facilities and to face the ageing of present MTRs. The Jules Horowitz Reactor (JHR) Project in Cadarache copes with this context, as an international service-oriented user-facility. In the field of nuclear fuels and materials irradiation experiments, a 6th FP co-ordination action, called JHR-CA, has started at the beginning of 2004 for 2 years. The main objective is to network existing expertise on development of a new generation of experimental devices, through definition of conceptual designs, instrumentation and related in-reactor services. This paper presents the outline of the JHR project, the organization of the JHR-CA programme, and a choice of irradiation device conceptual design results. (author)

Treatment technologies for low and intermediate level waste from nuclear applications. Final report of a co-ordinated research programme 1991-1996

International Nuclear Information System (INIS)

1997-02-01

Low and intermediate level radioactive waste is generated from the use of radioactive materials in industrial applications, research and medicine. The waste management programmes and activities in many developing Member States have been reviewed through a Waste Management Advisory Programme (WAMAP) implemented by the IAEA in 1987-1995. One of the WAMAP objectives was to assist in practical development and implementation of safe and efficient waste treatment methods. In this context the IAEA has initiated a co-ordinated research programme on treatment technologies for institutional wastes covering the most important recurring problems in developing Member States. The programme was intended to cover the research and development required for reliable waste treatment operations, including the likely variations in institutional waste inputs using simple low cost processes. This co-ordinated research programme was initiated in 1991 and brought together 14 participants from 13 countries. The results of the studies were discussed at three research co-ordination meetings. This report summarizes the salient features and results obtained during five year investigations and provides recommendations for future work in this area. Refs, figs, tabs

Treatment technologies for low and intermediate level waste from nuclear applications. Final report of a co-ordinated research programme 1991-1996

Energy Technology Data Exchange (ETDEWEB)

NONE

1997-02-01

Low and intermediate level radioactive waste is generated from the use of radioactive materials in industrial applications, research and medicine. The waste management programmes and activities in many developing Member States have been reviewed through a Waste Management Advisory Programme (WAMAP) implemented by the IAEA in 1987-1995. One of the WAMAP objectives was to assist in practical development and implementation of safe and efficient waste treatment methods. In this context the IAEA has initiated a co-ordinated research programme on treatment technologies for institutional wastes covering the most important recurring problems in developing Member States. The programme was intended to cover the research and development required for reliable waste treatment operations, including the likely variations in institutional waste inputs using simple low cost processes. This co-ordinated research programme was initiated in 1991 and brought together 14 participants from 13 countries. The results of the studies were discussed at three research co-ordination meetings. This report summarizes the salient features and results obtained during five year investigations and provides recommendations for future work in this area. Refs, figs, tabs.

Report on the consultants' meeting on co-ordination of the nuclear reaction data centres. (Technical aspects)

International Nuclear Information System (INIS)

Schwerer, O.; Lammer, M.; Pronyaev, V.G.

1999-08-01

This report summarizes the 1999 Co-ordination Meeting on Technical Aspects of the Co-operation of the Nuclear Reaction Data Centres, hold at the IAEA Headquarters in Vienna, Austria, 18 to 20 May 1999. The meeting was attended by scientists from 11 Nuclear Data Centres from 7 Member States and 2 International Organizations. The present document contains a meeting summary, the conclusions and actions, and progress reports of the Participating Data Centres. (author)

The transcriptional regulatory network of Mycobacterium tuberculosis.

Directory of Open Access Journals (Sweden)

Joaquín Sanz

Full Text Available Under the perspectives of network science and systems biology, the characterization of transcriptional regulatory (TR networks beyond the context of model organisms offers a versatile tool whose potential remains yet mainly unexplored. In this work, we present an updated version of the TR network of Mycobacterium tuberculosis (M.tb, which incorporates newly characterized transcriptional regulations coming from 31 recent, different experimental works available in the literature. As a result of the incorporation of these data, the new network doubles the size of previous data collections, incorporating more than a third of the entire genome of the bacterium. We also present an exhaustive topological analysis of the new assembled network, focusing on the statistical characterization of motifs significances and the comparison with other model organisms. The expanded M.tb transcriptional regulatory network, considering its volume and completeness, constitutes an important resource for diverse tasks such as dynamic modeling of gene expression and signaling processes, computational reliability determination or protein function prediction, being the latter of particular relevance, given that the function of only a small percent of the proteins of M.tb is known.

1st IAEA research co-ordination meeting on 'plasma-material interaction data for mixed plasma facing materials in fusion reactors'. Summary report

International Nuclear Information System (INIS)

Janev, R.K.; Longhurst, G.

1998-12-01

The proceedings and conclusions of the 1st IAEA Research Co-ordination Meeting on 'Plasma-Material Interaction Data for Mixed Plasma Facing Materials in Fusion Reactors', held on December 19 and 20, 1998 at the IAEA Headquarters in Vienna, are briefly described. This report includes a summary of the presentations made by meeting participants, a review of the data availability and data needs in the areas from the scope of the Co-ordinated Research Project (CRP) on the subject of the meeting, and recommendations regarding the future work within this CRP. (author)

A pathway-specific microarray analysis highlights the complex and co-ordinated transcriptional networks of the developing grain of field-grown barley

DEFF Research Database (Denmark)

Hansen, Michael; Friis, Carsten; Bowra, Steve

2009-01-01

The aim of the study was to describe the molecular and biochemical interactions associated with amino acid biosynthesis and storage protein accumulation in the developing grains of field-grown barley. Our strategy was to analyse the transcription of genes associated with the biosynthesis of stora...

The effect of industry clockspeed on supply chain co-ordination: Classical theory to sharpen an emerging concept

NARCIS (Netherlands)

Meijboom, Bert; Voordijk, Johannes T.; Akkermans, Henk

2007-01-01

Purpose – The relevance of “industry clockspeed” to supply chain co-ordination (SCC) has recently been stressed but hardly been researched. Taking an information-processing perspective, the purpose of this paper is to examine the development of SCC theory under varying clockspeed circumstances.

Downstream signaling mechanism of the C-terminal activation domain of transcriptional coactivator CoCoA

OpenAIRE

Kim, Jeong Hoon; Yang, Catherine K.; Stallcup, Michael R.

2006-01-01

The coiled-coil coactivator (CoCoA) is a transcriptional coactivator for nuclear receptors and enhances nuclear receptor function by the interaction with the bHLH-PAS domain (AD3) of p160 coactivators. The C-terminal activation domain (AD) of CoCoA possesses strong transactivation activity and is required for the coactivator function of CoCoA with nuclear receptors. To understand how CoCoA AD transmits its activating signal to the transcription machinery, we defined specific subregions, amino...

On cycles in the transcription network of Saccharomyces cerevisiae

Directory of Open Access Journals (Sweden)

Berman Piotr

2008-01-01

Full Text Available Abstract Background We investigate the cycles in the transcription network of Saccharomyces cerevisiae. Unlike a similar network of Escherichia coli, it contains many cycles. We characterize properties of these cycles and their place in the regulatory mechanism of the cell. Results Almost all cycles in the transcription network of Saccharomyces cerevisiae are contained in a single strongly connected component, which we call LSCC (L for "largest", except for a single cycle of two transcription factors. The fact that LSCC includes almost all cycles is well explained by the properties of a random graph with the same in- and out-degrees of the nodes. Among different physiological conditions, cell cycle has the most significant relationship with LSCC, as the set of 64 transcription interactions that are active in all phases of the cell cycle has overlap of 27 with the interactions of LSCC (of which there are 49. Conversely, if we remove the interactions that are active in all phases of the cell cycle (25% of interactions to transcription factors, the LSCC would have only three nodes and 5 edges, many fewer than expected. This subgraph of the transcription network consists mostly of interactions that are active only in the stress response subnetwork. We also characterize the role of LSCC in the topology of the network. We show that LSCC can be used to define a natural hierarchy in the network and that in every physiological subnetwork LSCC plays a pivotal role. Conclusion Apart from those well-defined conditions, the transcription network of Saccharomyces cerevisiae is devoid of cycles. It was observed that two conditions that were studied and that have no cycles of their own are exogenous: diauxic shift and DNA repair, while cell cycle and sporulation are endogenous. We claim that in a certain sense (slow recovery stress response is endogenous as well.

2nd (final) IAEA research co-ordination meeting on 'plasma-material interaction data for mixed plasma facing materials in fusion reactors'. Summary report

International Nuclear Information System (INIS)

Clark, R.E.H.

2001-11-01

The proceedings and conclusions of the 2nd Research Co-ordination Meeting on 'Plasma-Material Interaction Data for Mixed Plasma Facing Materials in Fusion Reactors', held on October 16 and 17, 2000 at the IAEA Headquarters in Vienna, are briefly described. This report includes a summary of the presentations made by the meeting participants and a review of the accomplishments of the Co-ordinated Research Project (CRP). In addition, short summaries from the participants are included indicating the specific research completed in support of this CRP. (author)

Cycles of light and dark co-ordinate reversible colony differentiation in Listeria monocytogenes.

Science.gov (United States)

Tiensuu, Teresa; Andersson, Christopher; Rydén, Patrik; Johansson, Jörgen

2013-02-01

Recently, several light receptors have been identified in non-phototrophic bacteria, but their physiological roles still remain rather elusive. Here we show that colonies of the saprophytic bacterium Listeria monocytogenes undergo synchronized multicellular behaviour on agar plates, in response to oscillating light/dark conditions, giving rise to alternating ring formation (opaque and translucent rings). On agar plates, bacteria from opaque rings survive increased levels of reactive oxygen species (ROS), as well as repeated cycles of light and dark, better than bacteria from translucent rings. The ring formation is strictly dependent on a blue-light receptor, Lmo0799, acting through the stress-sigma factor, σ(B) . A transposon screening identified 48 mutants unable to form rings at alternating light conditions, with several of them showing a decreased σ(B) activity/level. However, some of the tested mutants displayed a varied σ(B) activity depending on which of the two stress conditions tested (light or H(2) O(2) exposure). Intriguingly, the transcriptional regulator PrfA and the virulence factor ActA were shown to be required for ring formation by a mechanism involving activation of σ(B) . All in all, this suggests a distinct pathway for Lmo0799 that converge into a common signalling pathway for σ(B) activation. Our results show that night and day cycles co-ordinate a reversible differentiation of a L. monocytogenes colony at room temperature, by a process synchronized by a blue-light receptor and σ(B) . © 2013 Blackwell Publishing Ltd.

Microbial pathogenesis in cystic fibrosis: co-ordinate regulation of heat-shock response and conversion to mucoidy in Pseudomonas aeruginosa.

Science.gov (United States)

Schurr, M J; Deretic, V

1997-04-01

Conversion of Pseudomonas aeruginosa to the mucoid phenotype plays a major role in the pathogenesis of respiratory infections in cystic fibrosis (CF). One mechanism responsible for mucoidy is based on mutations that inactivate the anti-sigma factor, MucA, which normally inhibits the alternative sigma factor, AIgU. The loss of MucA allows AIgU to freely direct transcription of the genes responsible for the production of the exopolysaccharide alginate resulting in mucoid colony morphology. In Escherichia coli, a close homologue of AIgU, sigma(E), directs transcription of several genes under conditions of extreme heat shock. Here we examined whether AIgU, besides its role in controlling alginate production, affects the heat-shock response in P. aeruginosa. The P. aeruginosa rpoH gene encoding a homologue of the major heat-shock sigma factor, sigma32, was found to be transcribed by AIgU containing RNA polymerase from one of its promoters (P3) identified in this study. Transcription of rpoH from P3 was elevated upon exposure to extreme heat shock in an aIgU-dependent manner. Importantly, the AIgU-dependent promoter of rpoH was found to be activated in mucoid mucA mutants. In keeping with this observation, introduction of a wild-type mucA gene abrogated AIgU-dependent rpoH transcription in mucoid P. aeruginosa laboratory isolates and CF isolates. These results suggest that conversion to mucoidy and the heat-shock response are co-ordinately regulated in P. aeruginosa. The simultaneous activation of both systems in mucA mutants, selected in the lungs of CF patients, may have significance for the inflammatory processes characteristic of the establishment of chronic infection and ensuing clinical deterioration in CF.

Co-ordinate regulation of the cystic fibrosis and multidrug resistance genes in cystic fibrosis knockout mice.

Science.gov (United States)

Trezise, A E; Ratcliff, R; Hawkins, T E; Evans, M J; Freeman, T C; Romano, P R; Higgins, C F; Colledge, W H

1997-04-01

The cystic fibrosis (Cftr and multidrug resistance (Mdr1) genes encode structurally similar proteins which are members of the ABC transporter superfamily. These genes exhibit complementary patterns of expression in vivo, suggesting that the regulation of their expression may be co-ordinated. We have tested this hypothesis in vivo by examining Cftr and Mdr1 expression in cystic fibrosis knockout transgenic mice (Cftr(tm1CAM)). Cftr mRNA expression in Cftr(tm1CAM)/Cftr(tm1CAM) mice was 4-fold reduced in the intestine, as compared with littermate wild-type mice. All other Cftr(tm1CAM)/Cftr(tm1CAM) mouse tissues examined showed similar reductions in Cftr expression. In contrast, we observed a 4-fold increase in Mdr1 mRNA expression in the intestines of neonatal and 3- to 4-week-old Cftr(tm1CAM)/Cftr(tm1CAM) mice, as compared with age-matched +/+ mice, and an intermediate level of Mdr1 mRNA in heterozygous Cftr(tm1CAM) mice. In 10-week-old, Cftr(tm1CAM)/Cftr(tm1CAM) mice and in contrast to the younger mice, Mdr1 mRNA expression was reduced, by 3-fold. The expression of two control genes, Pgk-1 and Mdr2, was similar in all genotypes, suggesting that the changes in Mdr1 mRNA levels observed in the Cftr(tm1CAM)/Cftr(tm1CAM) mice are specific to the loss of Cftr expression and/or function. These data provide further evidence supporting the hypothesis that the regulation Cftr and Mdr1 expression is co-ordinated in vivo, and that this co-ordinate regulation is influenced by temporal factors.

Large-scale analysis of Arabidopsis transcription reveals a basal co-regulation network

Directory of Open Access Journals (Sweden)

Chamovitz Daniel A

2009-09-01

Full Text Available Abstract Background Analyses of gene expression data from microarray experiments has become a central tool for identifying co-regulated, functional gene modules. A crucial aspect of such analysis is the integration of data from different experiments and different laboratories. How to weigh the contribution of different experiments is an important point influencing the final outcomes. We have developed a novel method for this integration, and applied it to genome-wide data from multiple Arabidopsis microarray experiments performed under a variety of experimental conditions. The goal of this study is to identify functional globally co-regulated gene modules in the Arabidopsis genome. Results Following the analysis of 21,000 Arabidopsis genes in 43 datasets and about 2 × 108 gene pairs, we identified a globally co-expressed gene network. We found clusters of globally co-expressed Arabidopsis genes that are enriched for known Gene Ontology annotations. Two types of modules were identified in the regulatory network that differed in their sensitivity to the node-scoring parameter; we further showed these two pertain to general and specialized modules. Some of these modules were further investigated using the Genevestigator compendium of microarray experiments. Analyses of smaller subsets of data lead to the identification of condition-specific modules. Conclusion Our method for identification of gene clusters allows the integration of diverse microarray experiments from many sources. The analysis reveals that part of the Arabidopsis transcriptome is globally co-expressed, and can be further divided into known as well as novel functional gene modules. Our methodology is general enough to apply to any set of microarray experiments, using any scoring function.

Production of {sup 99}Tc{sup m} radiopharmaceuticals for brain, heart and kidney imaging. Final report of a co-ordinated research programme 1991-1994

Energy Technology Data Exchange (ETDEWEB)

NONE

1995-07-01

The report contains highlights of the achievements of the IAEA Co-ordinated Research programme on Evaluation on the Use of Bulk Reagents for the Production of {sup 99}Tc{sub m} Radiopharmaceutical and Kits, the participants` summary reports (Argentina, Chile, Greece, India, Indonesia, Japan, Malaysia, Portugal, Russian Federation, Thailand, Uruguay, United States of America), recommended product protocols for five compounds and the participants` recommendations regarding continued support and further directions of co-ordinated research work. Refs, 6 figs, 8 tabs, 6 schemes.

The role of cell cycle in retinal development: cyclin-dependent kinase inhibitors co-ordinate cell-cycle inhibition, cell-fate determination and differentiation in the developing retina.

Science.gov (United States)

Bilitou, Aikaterini; Ohnuma, Shin-ichi

2010-03-01

The mature retina is formed through multi-step developmental processes, including eye field specification, optic vesicle evagination, and cell-fate determination. Co-ordination of these developmental events with cell-proliferative activity is essential to achieve formation of proper retinal structure and function. In particular, the molecular and cellular dynamics of the final cell cycle significantly influence the identity that a cell acquires, since cell fate is largely determined at the final cell cycle for the production of postmitotic cells. This review summarizes our current understanding of the cellular mechanisms that underlie the co-ordination of cell-cycle and cell-fate determination, and also describes a molecular role of cyclin-dependent kinase inhibitors (CDKIs) as co-ordinators of cell-cycle arrest, cell-fate determination and differentiation. Copyright (c) 2010 Wiley-Liss, Inc.

New ordinances

International Nuclear Information System (INIS)

Reuter, H.

1980-01-01

Based on extensive preliminary work of the responsible Federal Minister of Labour and Social Affairs, the 'Ordinance to Replace Ordinances under Article 24 of the Irading and Industrial Code' has been issued by the Federal Government on February 27, 1980. This new ordinance also contains the new versions of the Steam Boiler Ordinance, the Pressure Gas Ordinance, the Lift Ordinance, the Ordinance on Electrical Installations in Rooms with High Explosion Hazards, the Acetylene Ordinance, and the Ordinance on Combustible Liquids. Accordingly, these new ordinances all have the same date of issue. Coming into force on July 1, 1980, they will replace six ordinances for plants to be licensed. The same applies to the pertinent general administrative regulations. (orig.) [de

Transcriptional activity of Pax3 is co-activated by TAZ

International Nuclear Information System (INIS)

Murakami, Masao; Tominaga, Junji; Makita, Ryosuke; Uchijima, Yasunobu; Kurihara, Yukiko; Nakagawa, Osamu; Asano, Tomoichiro; Kurihara, Hiroki

2006-01-01

Pax3 is a transcription factor which functions in embryonic development and human diseases. In a yeast two-hybrid screen with full-length Pax3 as bait, we isolated a clone encoding transcriptional co-activator with PDZ-binding motif (TAZ) from an E10.5 mouse embryo cDNA library. Co-immunoprecipitation and nuclear co-localization of TAZ with Pax3 suggest that their association is functionally relevant. In situ hybridization revealed TAZ and Pax3 expression to partially overlap in the paraxial mesoderm, limb buds, and the neural tube. In C2C12 myoblast cells and NIH3T3 cells, TAZ enhanced the transcriptional activity of Pax3 on artificial and microphthalmia-associated transcription factor promoter-luciferase constructs, suggesting that TAZ can function as a co-activator of Pax3. Functional interaction between Pax3 and TAZ may provide a clue to clarifying the mechanism by which Pax3 serves as a transcriptional activator during embryogenesis

Vibrational spectra and normal co-ordinate analysis of 2-aminopyridine and 2-amino picoline.

Science.gov (United States)

Jose, Sujin P; Mohan, S

2006-05-01

The Fourier transform infrared (FT-IR) and Raman (FT-R) spectra of 2-aminopyridine and 2-amino picoline were recorded and the observed frequencies were assigned to various modes of vibration in terms of fundamentals by assuming Cs point group symmetry. A normal co-ordinate analysis was also carried out for the proper assignment of the vibrational frequencies using simple valence force field. A complete vibrational analysis is presented here for the molecules and the results are briefly discussed.

Efficient nonlinear registration of 3D images using high order co-ordinate transfer functions.

Science.gov (United States)

Barber, D C

1999-01-01

There is an increasing interest in image registration for a variety of medical imaging applications. Image registration is achieved through the use of a co-ordinate transfer function (CTF) which maps voxels in one image to voxels in the other image, including in the general case changes in mapped voxel intensity. If images of the same subject are to be registered the co-ordinate transfer function needs to implement a spatial transformation consisting of a displacement and a rigid rotation. In order to achieve registration a common approach is to choose a suitable quality-of-registration measure and devise a method for the efficient generation of the parameters of the CTF which minimize this measure. For registration of images from different subjects more complex transforms are required. In general function minimization is too slow to allow the use of CTFs with more than a small number of parameters. However, provided the images are from the same modality and the CTF can be expanded in terms of an appropriate set of basis functions this paper will show how relatively complex CTFs can be used for registration. The use of increasingly complex CTFs to minimize the within group standard deviation of a set of normal single photon emission tomography brain images is used to demonstrate the improved registration of images from different subjects using CTFs of increasing complexity.

Research co-ordination meeting on labelling, quality control and clinical evaluation of monoclonal antibodies for scintigraphy, Kuala Lumpur, Malaysia, 9-13 September 1991

International Nuclear Information System (INIS)

1991-09-01

The Co-ordinated Research Programme (CRP) on ''Labelling, quality control and clinical evaluation of monoclonal antibodies for scintigraphy'' arose from the deliberations at an IAEA Consultants' Meeting (CM) on ''Radiolabelling techniques of monoclonal antibodies'' held in Vienna on 22-24 August 1988. The following is a brief description of the relevant recommendations arising from said meeting. A more detailed description of the proceedings may be found in the summary report issued on 8 December 1989. This report incorporates the results of the first Research Co-ordination Meeting (RCM) of subject CRP held in Kuala Lumpur, Malaysia on 9-13 September 1991. 9 refs

Acoustic signal processing for the detection of sodium boiling or sodium-water reaction in LMFRs. Final report of a co-ordinated research programme 1990-1995

International Nuclear Information System (INIS)

1997-05-01

This report is a summary of the work performed under a co-ordinated research programme entitled Acoustic Signal Processing for the Detection of Sodium Boiling or Sodium-Water Reaction in Liquid Metal Cooled Fast Reactors. The programme was organized by the IAEA and carried out from 1990 to 1995. It was the continuation of an earlier research co-ordination programme entitled Signal Processing Techniques for Sodium Boiling Noise Detection, which was carried out from 1984 to 1989. Refs, figs, tabs

Report on the IAEA consultants' meeting on the co-ordination of nuclear reaction data centres (technical aspects)

Energy Technology Data Exchange (ETDEWEB)

Schwerer, O [International Atomic Energy Agency, Nuclear Data Section, Vienna (Austria)

2001-07-01

This report summarizes the results of the IAEA Consultants' Meeting on the Co-ordination of Nuclear Reaction Data Centres (Technical Aspects), held at the IAEA Headquarters, Vienna, Austria, 28 to 30 May 2001. The meeting was attended by 16 participants from 10 co-operating data centres from six Member States and two International Organizations. The report contains a meeting summary, the conclusions and actions, progress and status reports of the participating data centres and working papers considered at the meeting. (author)

Effects of experimental muscle pain on muscle activity and co-ordination during static and dynamic motor function.

Science.gov (United States)

Graven-Nielsen, T; Svensson, P; Arendt-Nielsen, L

1997-04-01

The relation between muscle pain, muscle activity, and muscle co-ordination is still controversial. The present human study investigates the influence of experimental muscle pain on resting, static, and dynamic muscle activity. In the resting and static experiments, the electromyography (EMG) activity and the contraction force of m. tibialis anterior were assessed before and after injection of 0.5 ml hypertonic saline (5%) into the same muscle. In the dynamic experiment, injections of 0.5 ml hypertonic saline (5%) were performed into either m. tibialis anterior (TA) or m. gastrocnemius (GA) and the muscle activity and co-ordination were investigated during gait on a treadmill by EMG recordings from m. TA and m. GA. At rest no evidence of EMG hyperactivity was found during muscle pain. The maximal voluntary contraction (MVC) during muscle pain was significantly lower than the control condition (P Fibromyalgia and Myofascial Pain. Elsevier, Amsterdam, 1993, pp. 311-327.) which predicts increased activity of antagonistic muscle and decreased activity of agonistic muscle during experimental and clinical muscle pain.

Wormhole Detection Based on Ordinal MDS Using RTT in Wireless Sensor Network

Directory of Open Access Journals (Sweden)

Saswati Mukherjee

2016-01-01

Full Text Available In wireless communication, wormhole attack is a crucial threat that deteriorates the normal functionality of the network. Invasion of wormholes destroys the network topology completely. However, most of the existing solutions require special hardware or synchronized clock or long processing time to defend against long path wormhole attacks. In this work, we propose a wormhole detection method using range-based topology comparison that exploits the local neighbourhood subgraph. The Round Trip Time (RTT for each node pair is gathered to generate neighbour information. Then, the network is reconstructed by ordinal Multidimensional Scaling (MDS followed by a suspicion phase that enlists the suspected wormholes based on the spatial reconstruction. Iterative computation of MDS helps to visualize the topology changes and can localize the potential wormholes. Finally, a verification phase is used to remove falsely accused nodes and identify real adversaries. The novelty of our algorithm is that it can detect both short path and long path wormhole links. Extensive simulations are executed to demonstrate the efficacy of our approach compared to existing ones.

Encouraging ethical considerations - One important task for a national co-ordinator for nuclear waste disposal

International Nuclear Information System (INIS)

Soederberg, O.

1999-01-01

The paper is a brief description of the role and tasks of the Swedish National Co-ordinator for Nuclear Waste Disposal with special regard to one of his activities encouraging ethical considerations in the nuclear waste management issue. Examples are given of ethical considerations which have emerged during discussions among representatives of municipalities which are affected by the current search for a site for a deep geological repository in Sweden for spent nuclear fuel

Co-ordinated research and environmental surveillance programme related to sea disposal of radioactive waste

International Nuclear Information System (INIS)

1996-01-01

The co-ordinated Research and Environmental Surveillance Programme relevant to sea disposal of radioactive waste (CRESP) was created in 1981 in the framework of the 1977 Decision of the OECD Council establishing a Multilateral Consultation and Surveillance Mechanism for Sea Dumping of Radioactive Waste. CRESP was essentially a scientific research programme. Its main objective was to increase the knowledge of processes controlling the transfer of radionuclides in the marine environment, so that safety assessments could be based on more accurate and comprehensive scientific data. From 1986, in response to a request from the Paris Commission, CRESP also considered the scientific aspects of coastal releases. CRESP made it possible to co-ordinate national research activities and generated an important international co-operation in its areas of work. The vast amount of scientific information gathered in this framework increased strongly our knowledge of the impact of radionuclides introduced to the deep sea environment. In particular, CRESP provided the basis for a comprehensive safety analysis of sea dumping operations. This study, published by the NEA in 1985, is still e reference on the subject. In November 1993, the Sixteenth Consultative Meeting of Contracting Parties to the London Convention 1972 voted a total ban on the disposal at sea of radioactive wastes and other radioactive matter. Considering this decision, the conclusions of the 1985 safety analysis, and CRESP's view that new scientific findings are unlikely to alter these conclusions, the NEA Steering Committee for nuclear Energy decided in October 1995 to terminate the programme. The present report summarises the knowledge accumulated within CRESP over its fifteen years of existence. (author)

Uncovering transcriptional regulation of metabolism by using metabolic network topology

DEFF Research Database (Denmark)

Patil, Kiran Raosaheb; Nielsen, Jens

2005-01-01

in the metabolic network that follow a common transcriptional response. Thus, the algorithm enables identification of so-called reporter metabolites (metabolites around which the most significant transcriptional changes occur) and a set of connected genes with significant and coordinated response to genetic......Cellular response to genetic and environmental perturbations is often reflected and/or mediated through changes in the metabolism, because the latter plays a key role in providing Gibbs free energy and precursors for biosynthesis. Such metabolic changes are often exerted through transcriptional...... therefore developed an algorithm that is based on hypothesis-driven data analysis to uncover the transcriptional regulatory architecture of metabolic networks. By using information on the metabolic network topology from genome-scale metabolic reconstruction, we show that it is possible to reveal patterns...

Twenty-Third Report of the Administrative Committee on Co-ordination to the Economic and Social Council of the United Nations

Energy Technology Data Exchange (ETDEWEB)

NONE

1959-07-09

In accordance with Article XI of the Relationship Agreement between the Agency and the United Nations, the Agency is participating in the work of the Administrative Committee on Co-ordination (ACC) and of certain of its subsidiary bodies.

Co-Transcriptional Folding and Regulation Mechanisms of Riboswitches

Directory of Open Access Journals (Sweden)

Sha Gong

2017-07-01

Full Text Available Riboswitches are genetic control elements within non-coding regions of mRNA. These self-regulatory elements have been found to sense a range of small metabolites, ions, and other physical signals to exert regulatory control of transcription, translation, and splicing. To date, more than a dozen riboswitch classes have been characterized that vary widely in size and secondary structure. Extensive experiments and theoretical studies have made great strides in understanding the general structures, genetic mechanisms, and regulatory activities of individual riboswitches. As the ligand-dependent co-transcriptional folding and unfolding dynamics of riboswitches are the key determinant of gene expression, it is important to investigate the thermodynamics and kinetics of riboswitches both in the presence and absence of metabolites under the transcription. This review will provide a brief summary of the studies about the regulation mechanisms of the pbuE, SMK, yitJ, and metF riboswitches based on the ligand-dependent co-transcriptional folding of the riboswitches.

Metabolic Network Topology Reveals Transcriptional Regulatory Signatures of Type 2 Diabetes

DEFF Research Database (Denmark)

Zelezniak, Aleksej; Pers, Tune Hannes; Pinho Soares, Simao Pedro

2010-01-01

mechanisms underlying these transcriptional changes and their impact on the cellular metabolic phenotype is a challenging task due to the complexity of transcriptional regulation and the highly interconnected nature of the metabolic network. In this study we integrate skeletal muscle gene expression datasets...... with human metabolic network reconstructions to identify key metabolic regulatory features of T2DM. These features include reporter metabolites—metabolites with significant collective transcriptional response in the associated enzyme-coding genes, and transcription factors with significant enrichment...... factor regulatory network connecting several parts of metabolism. The identified transcription factors include members of the CREB, NRF1 and PPAR family, among others, and represent regulatory targets for further experimental analysis. Overall, our results provide a holistic picture of key metabolic...

A Hybrid Heuristic Optimization Approach for Leak Detection in Pipe Networks Using Ordinal Optimization Approach and the Symbiotic Organism Search

Directory of Open Access Journals (Sweden)

Chao-Chih Lin

2017-10-01

Full Text Available A new transient-based hybrid heuristic approach is developed to optimize a transient generation process and to detect leaks in pipe networks. The approach couples the ordinal optimization approach (OOA and the symbiotic organism search (SOS to solve the optimization problem by means of iterations. A pipe network analysis model (PNSOS is first used to determine steady-state head distribution and pipe flow rates. The best transient generation point and its relevant valve operation parameters are optimized by maximizing the objective function of transient energy. The transient event is created at the chosen point, and the method of characteristics (MOC is used to analyze the transient flow. The OOA is applied to sift through the candidate pipes and the initial organisms with leak information. The SOS is employed to determine the leaks by minimizing the sum of differences between simulated and computed head at the observation points. Two synthetic leaking scenarios, a simple pipe network and a water distribution network (WDN, are chosen to test the performance of leak detection ordinal symbiotic organism search (LDOSOS. Leak information can be accurately identified by the proposed approach for both of the scenarios. The presented technique makes a remarkable contribution to the success of leak detection in the pipe networks.

Some Problems of Rocket-Space Vehicles' Characteristics co- ordination

Science.gov (United States)

Sergienko, Alexander A.

2002-01-01

of the XX century suffered a reverse. The designers of the United States' firms and enterprises of aviation and rocket-space industry (Boeing, Rocketdyne, Lockheed Martin, McDonnell Douglas, Rockwell, etc.) and NASA (Marshall Space Flight Center, Johnson Space Center, Langley Research Center and Lewis Research Center and others) could not correctly co-ordinate the characteristics of a propulsion system and a space vehicle for elaboration of the "Single-Stage-To-Orbit" reusable vehicle (SSTO) as an integral whole system, which is would able to inject a payload into an orbit and to return back on the Earth. jet nozzle design as well as the choice of propulsion system characteristics, ensuring the high ballistic efficiency, are considered in the present report. The efficiency criterions for the engine and launch system parameters optimization are discussed. The new methods of the nozzle block optimal parameters' choice for the satisfaction of the object task of flight are suggested. The family of SSTO with a payload mass from 5 to 20 ton and initial weight under 800 ton is considered.

Coevolution within a transcriptional network by compensatory trans and cis mutations

KAUST Repository

Kuo, D.; Licon, K.; Bandyopadhyay, S.; Chuang, R.; Luo, C.; Catalana, J.; Ravasi, Timothy; Tan, K.; Ideker, T.

2010-01-01

Transcriptional networks have been shown to evolve very rapidly, prompting questions as to how such changes arise and are tolerated. Recent comparisons of transcriptional networks across species have implicated variations in the cis-acting DNA

Transcriptional networks and chromatin remodeling controlling adipogenesis

DEFF Research Database (Denmark)

Siersbæk, Rasmus; Nielsen, Ronni; Mandrup, Susanne

2012-01-01

Adipocyte differentiation is tightly controlled by a transcriptional cascade, which directs the extensive reprogramming of gene expression required to convert fibroblast-like precursor cells into mature lipid-laden adipocytes. Recent global analyses of transcription factor binding and chromatin...... remodeling have revealed 'snapshots' of this cascade and the chromatin landscape at specific time-points of differentiation. These studies demonstrate that multiple adipogenic transcription factors co-occupy hotspots characterized by an open chromatin structure and specific epigenetic modifications....... Such transcription factor hotspots are likely to represent key signaling nodes which integrate multiple adipogenic signals at specific chromatin sites, thereby facilitating coordinated action on gene expression....

In silico transcriptional regulatory networks involved in tomato fruit ripening

Directory of Open Access Journals (Sweden)

Stilianos Arhondakis

2016-08-01

Full Text Available ABSTRACTTomato fruit ripening is a complex developmental programme partly mediated by transcriptional regulatory networks. Several transcription factors (TFs which are members of gene families such as MADS-box and ERF were shown to play a significant role in ripening through interconnections into an intricate network. The accumulation of large datasets of expression profiles corresponding to different stages of tomato fruit ripening and the availability of bioinformatics tools for their analysis provide an opportunity to identify TFs which might regulate gene clusters with similar co-expression patterns. We identified two TFs, a SlWRKY22-like and a SlER24 transcriptional activator which were shown to regulate modules by using the LeMoNe algorithm for the analysis of our microarray datasets representing four stages of fruit ripening, breaker, turning, pink and red ripe. The WRKY22-like module comprised a subgroup of six various calcium sensing transcripts with similar to the TF expression patterns according to real time PCR validation. A promoter motif search identified a cis acting element, the W-box, recognized by WRKY TFs that was present in the promoter region of all six calcium sensing genes. Moreover, publicly available microarray datasets of similar ripening stages were also analyzed with LeMoNe resulting in TFs such as SlERF.E1, SlERF.C1, SlERF.B2, SLERF.A2, SlWRKY24, SLWRKY37 and MADS-box/TM29 which might also play an important role in regulation of ripening. These results suggest that the SlWRKY22-like might be involved in the coordinated regulation of expression of the six calcium sensing genes. Conclusively the LeMoNe tool might lead to the identification of putative TF targets for further physiological analysis as regulators of tomato fruit ripening.

Applied research on air pollution using nuclear-related analytical techniques. Report on the second research co-ordination meeting

Energy Technology Data Exchange (ETDEWEB)

NONE

1995-07-01

A co-ordinated research programme (CRP) on applied research on air pollution using nuclear-related techniques is a global CRP which started in 1992, and is scheduled to run until early 1997. The purpose of this CRP is to promote the use of nuclear analytical techniques in air pollution studies, e.g. NAA, XRF, and PIXE for the analysis of toxic and other trace elements in air particulate matter. The main purposes of the core programme are i) to support the use of nuclear and nuclear-related analytical techniques for research and monitoring studies on air pollution, ii) to identify major sources of air pollution affecting each of the participating countries with particular reference to toxic heavy metals, and iii) to obtain comparative data on pollution levels in areas of high pollution (e.g. a city centre or a populated area downwind of a large pollution source) and low pollution (e.g. rural area). This document reports the discussions held during the second Research Co-ordination Meeting (RCM) for the CRP which took place at ANSTO in Menai, Australia. (author)

Applied research on air pollution using nuclear-related analytical techniques. Report on the second research co-ordination meeting

International Nuclear Information System (INIS)

1995-01-01

A co-ordinated research programme (CRP) on applied research on air pollution using nuclear-related techniques is a global CRP which started in 1992, and is scheduled to run until early 1997. The purpose of this CRP is to promote the use of nuclear analytical techniques in air pollution studies, e.g. NAA, XRF, and PIXE for the analysis of toxic and other trace elements in air particulate matter. The main purposes of the core programme are i) to support the use of nuclear and nuclear-related analytical techniques for research and monitoring studies on air pollution, ii) to identify major sources of air pollution affecting each of the participating countries with particular reference to toxic heavy metals, and iii) to obtain comparative data on pollution levels in areas of high pollution (e.g. a city centre or a populated area downwind of a large pollution source) and low pollution (e.g. rural area). This document reports the discussions held during the second Research Co-ordination Meeting (RCM) for the CRP which took place at ANSTO in Menai, Australia. (author)

Handbook for the planning, co-ordination and evaluation of emergency exercises in nuclear power plants

International Nuclear Information System (INIS)

Schmidtborn, I.; Bath, N.

1999-01-01

The efficiency of the on-site emergency organization in German nuclear power plants is tested regularly through emergency exercises. To achieve federal harmonization on a high level of quality a handbook for the planning, co-ordination and evaluation of such exercises has been developed in the frame of the regulatory investigation programme. In this handbook requirements are set out for emergency training. Key elements are a modular structure, rules to be observed and guidance for post-exercise evaluation. (orig.) [de

Evolutionary features of academic articles co-keyword network and keywords co-occurrence network: Based on two-mode affiliation network

Science.gov (United States)

Li, Huajiao; An, Haizhong; Wang, Yue; Huang, Jiachen; Gao, Xiangyun

2016-05-01

Keeping abreast of trends in the articles and rapidly grasping a body of article's key points and relationship from a holistic perspective is a new challenge in both literature research and text mining. As the important component, keywords can present the core idea of the academic article. Usually, articles on a single theme or area could share one or some same keywords, and we can analyze topological features and evolution of the articles co-keyword networks and keywords co-occurrence networks to realize the in-depth analysis of the articles. This paper seeks to integrate statistics, text mining, complex networks and visualization to analyze all of the academic articles on one given theme, complex network(s). All 5944 ;complex networks; articles that were published between 1990 and 2013 and are available on the Web of Science are extracted. Based on the two-mode affiliation network theory, a new frontier of complex networks, we constructed two different networks, one taking the articles as nodes, the co-keyword relationships as edges and the quantity of co-keywords as the weight to construct articles co-keyword network, and another taking the articles' keywords as nodes, the co-occurrence relationships as edges and the quantity of simultaneous co-occurrences as the weight to construct keyword co-occurrence network. An integrated method for analyzing the topological features and evolution of the articles co-keyword network and keywords co-occurrence networks is proposed, and we also defined a new function to measure the innovation coefficient of the articles in annual level. This paper provides a useful tool and process for successfully achieving in-depth analysis and rapid understanding of the trends and relationships of articles in a holistic perspective.

Development of feed supplementation strategies for improving the productivity of dairy cattle on smallholder farms in Africa. Proceedings of the final research co-ordination meeting of a co-ordinated research project

Energy Technology Data Exchange (ETDEWEB)

NONE

1999-07-01

The Joint FAO/IAEA Division of Nuclear Techniques in Food and Agriculture through co-ordinated research projects (CRP) supports studies aimed at improving livestock productivity in developing countries through the application of nuclear and related techniques. These studies have focused on animal nutrition, animal reproduction and more recently on animal nutrition/reproduction interactions with emphasis on smallholder farming systems. The primary aim of this CRP was to identify approaches for improving the productivity of dairy cattle maintained on smallholder farms in peri-urban areas. Central to the approach was to first obtain baseline information on productivity and reproductive efficiency and thereby identify nutritional and management constraints. Subsequently, corrective measures were developed and tested, keeping in mind the need for maximising the efficiency of current production systems and sustaining the nutrient supply through practical and economically feasible feed supplementation strategies developed using locally available feed resources. In addition the project envisaged contributing to enhancing the level of expertise within the national animal production research institutes in the region, to encourage close contact and interaction between scientists and institutions in Africa and to promote scientific information exchange on a regional basis. Through the project substantial progress was made in understanding the relationship between nutrient supply and productive and reproductive functions in dairy cattle on smallholder farming systems. Most of the participating countries were able to develop and test cost-effective feed supplementation strategies which improved both milk production and/or reproductive efficiency. The present publication contains the reports from participants of the project presented at the final Research Co-ordination Meeting held in Vienna from 7 to 11 September 1998 Refs, figs, tabs

Development of feed supplementation strategies for improving the productivity of dairy cattle on smallholder farms in Africa. Proceedings of the final research co-ordination meeting of a co-ordinated research project

International Nuclear Information System (INIS)

1999-07-01

The Joint FAO/IAEA Division of Nuclear Techniques in Food and Agriculture through co-ordinated research projects (CRP) supports studies aimed at improving livestock productivity in developing countries through the application of nuclear and related techniques. These studies have focused on animal nutrition, animal reproduction and more recently on animal nutrition/reproduction interactions with emphasis on smallholder farming systems. The primary aim of this CRP was to identify approaches for improving the productivity of dairy cattle maintained on smallholder farms in peri-urban areas. Central to the approach was to first obtain baseline information on productivity and reproductive efficiency and thereby identify nutritional and management constraints. Subsequently, corrective measures were developed and tested, keeping in mind the need for maximising the efficiency of current production systems and sustaining the nutrient supply through practical and economically feasible feed supplementation strategies developed using locally available feed resources. In addition the project envisaged contributing to enhancing the level of expertise within the national animal production research institutes in the region, to encourage close contact and interaction between scientists and institutions in Africa and to promote scientific information exchange on a regional basis. Through the project substantial progress was made in understanding the relationship between nutrient supply and productive and reproductive functions in dairy cattle on smallholder farming systems. Most of the participating countries were able to develop and test cost-effective feed supplementation strategies which improved both milk production and/or reproductive efficiency. The present publication contains the reports from participants of the project presented at the final Research Co-ordination Meeting held in Vienna from 7 to 11 September 1998

Identification of the arabidopsis RAM/MOR signalling network: adding new regulatory players in plant stem cell maintenance and cell polarization

Science.gov (United States)

Zermiani, Monica; Begheldo, Maura; Nonis, Alessandro; Palme, Klaus; Mizzi, Luca; Morandini, Piero; Nonis, Alberto; Ruperti, Benedetto

2015-01-01

Background and Aims The RAM/MOR signalling network of eukaryotes is a conserved regulatory module involved in co-ordination of stem cell maintenance, cell differentiation and polarity establishment. To date, no such signalling network has been identified in plants. Methods Genes encoding the bona fide core components of the RAM/MOR pathway were identified in Arabidopsis thaliana (arabidopsis) by sequence similarity searches conducted with the known components from other species. The transcriptional network(s) of the arabidopsis RAM/MOR signalling pathway were identified by running in-depth in silico analyses for genes co-regulated with the core components. In situ hybridization was used to confirm tissue-specific expression of selected RAM/MOR genes. Key Results Co-expression data suggested that the arabidopsis RAM/MOR pathway may include genes involved in floral transition, by co-operating with chromatin remodelling and mRNA processing/post-transcriptional gene silencing factors, and genes involved in the regulation of pollen tube polar growth. The RAM/MOR pathway may act upstream of the ROP1 machinery, affecting pollen tube polar growth, based on the co-expression of its components with ROP-GEFs. In silico tissue-specific co-expression data and in situ hybridization experiments suggest that different components of the arabidopsis RAM/MOR are expressed in the shoot apical meristem and inflorescence meristem and may be involved in the fine-tuning of stem cell maintenance and cell differentiation. Conclusions The arabidopsis RAM/MOR pathway may be part of the signalling cascade that converges in pollen tube polarized growth and in fine-tuning stem cell maintenance, differentiation and organ polarity. PMID:26078466

Efficient computation of co-transcriptional RNA-ligand interaction dynamics.

Science.gov (United States)

Wolfinger, Michael T; Flamm, Christoph; Hofacker, Ivo L

2018-05-04

Riboswitches form an abundant class of cis-regulatory RNA elements that mediate gene expression by binding a small metabolite. For synthetic biology applications, they are becoming cheap and accessible systems for selectively triggering transcription or translation of downstream genes. Many riboswitches are kinetically controlled, hence knowledge of their co-transcriptional mechanisms is essential. We present here an efficient implementation for analyzing co-transcriptional RNA-ligand interaction dynamics. This approach allows for the first time to model concentration-dependent metabolite binding/unbinding kinetics. We exemplify this novel approach by means of the recently studied I-A 2 ' -deoxyguanosine (2 ' dG)-sensing riboswitch from Mesoplasma florum. Copyright © 2018 Elsevier Inc. All rights reserved.

Specificity and robustness in transcription control networks.

Science.gov (United States)

Sengupta, Anirvan M; Djordjevic, Marko; Shraiman, Boris I

2002-02-19

Recognition by transcription factors of the regulatory DNA elements upstream of genes is the fundamental step in controlling gene expression. How does the necessity to provide stability with respect to mutation constrain the organization of transcription control networks? We examine the mutation load of a transcription factor interacting with a set of n regulatory response elements as a function of the factor/DNA binding specificity and conclude on theoretical grounds that the optimal specificity decreases with n. The predicted correlation between variability of binding sites (for a given transcription factor) and their number is supported by the genomic data for Escherichia coli. The analysis of E. coli genomic data was carried out using an algorithm suggested by the biophysical model of transcription factor/DNA binding. Complete results of the search for candidate transcription factor binding sites are available at http://www.physics.rockefeller.edu/~boris/public/search_ecoli.

Aggregation of topological motifs in the Escherichia coli transcriptional regulatory network

Directory of Open Access Journals (Sweden)

Barabási Albert-László

2004-01-01

Full Text Available Abstract Background Transcriptional regulation of cellular functions is carried out through a complex network of interactions among transcription factors and the promoter regions of genes and operons regulated by them.To better understand the system-level function of such networks simplification of their architecture was previously achieved by identifying the motifs present in the network, which are small, overrepresented, topologically distinct regulatory interaction patterns (subgraphs. However, the interaction of such motifs with each other, and their form of integration into the full network has not been previously examined. Results By studying the transcriptional regulatory network of the bacterium, Escherichia coli, we demonstrate that the two previously identified motif types in the network (i.e., feed-forward loops and bi-fan motifs do not exist in isolation, but rather aggregate into homologous motif clusters that largely overlap with known biological functions. Moreover, these clusters further coalesce into a supercluster, thus establishing distinct topological hierarchies that show global statistical properties similar to the whole network. Targeted removal of motif links disintegrates the network into small, isolated clusters, while random disruptions of equal number of links do not cause such an effect. Conclusion Individual motifs aggregate into homologous motif clusters and a supercluster forming the backbone of the E. coli transcriptional regulatory network and play a central role in defining its global topological organization.

Use of isotopic tracers in studies of herbicides performance on grasses and sedges. Report of a final research co-ordination meeting

Energy Technology Data Exchange (ETDEWEB)

NONE

1998-02-01

Herbicide products as sold to the user are a mixture or formulation of active ingredient, surfactants and other adjuvants, plus a carrier, which will be a liquid if the formulation is to be applied as a spray. The adjuvants affect the characteristics of the spray, including the retention of the droplets by plant surfaces and the penetration of active ingredient into the plant. Thus they play a critical part in determining the phototoxicity and selectivity of the product. The IAEA organized a co-ordinated research programme in 1992 to explore the possibility of improving the performance of the herbicide glyphosate on Cyperus rotundus (purple nutsedge), commonly regarded as the ``world`s worst weed``, by modifying the commercial formulation using penetration studies with {sup 14}C labelled glyphosate as the initial screening procedure. This TECDOC summarizes the outcome of the programme and includes the papers presented at the research co-ordination meeting held in Los Banos, Philippines, 17-21 February 1997. The co-operation of the Monsanto Company, the manufacturer of the glyphosate herbicide, is gratefully acknowledged. Refs, figs, tabs.

Use of isotopic tracers in studies of herbicides performance on grasses and sedges. Report of a final research co-ordination meeting

International Nuclear Information System (INIS)

1998-02-01

Herbicide products as sold to the user are a mixture or formulation of active ingredient, surfactants and other adjuvants, plus a carrier, which will be a liquid if the formulation is to be applied as a spray. The adjuvants affect the characteristics of the spray, including the retention of the droplets by plant surfaces and the penetration of active ingredient into the plant. Thus they play a critical part in determining the phototoxicity and selectivity of the product. The IAEA organized a co-ordinated research programme in 1992 to explore the possibility of improving the performance of the herbicide glyphosate on Cyperus rotundus (purple nutsedge), commonly regarded as the ''world's worst weed'', by modifying the commercial formulation using penetration studies with 14 C labelled glyphosate as the initial screening procedure. This TECDOC summarizes the outcome of the programme and includes the papers presented at the research co-ordination meeting held in Los Banos, Philippines, 17-21 February 1997. The co-operation of the Monsanto Company, the manufacturer of the glyphosate herbicide, is gratefully acknowledged

Co-ordinated research programme on the use of nuclear and nuclear-related techniques in the study of environmental pollution associated with solid wastes

International Nuclear Information System (INIS)

1991-01-01

A co-ordinated research programme on the use of nuclear and nuclear-related techniques in the study of environmental pollution associated with solid wastes was started by the IAEA in December 1987 and now comprises twenty-three participants from twenty-one countries. Topics of interest in this programme include studies of atmospheric aerosols, coal fly ash, incinerator ash, sewage sludge and a variety of other environmental specimens contaminated with solid wastes. The analytical techniques used include neutron activation analysis, particle-induced X-ray emission and energy-dispersive X-ray fluorescence. This report summarizes the discussions that took place during the second research co-ordination meeting. Working papers presented by the participants are included as annexes and have been indexed separately. Refs, figs and tabs

Co-ordinated research programme on the use of nuclear and nuclear-related techniques in the study of environmental pollution associated with solid wastes

International Nuclear Information System (INIS)

1992-01-01

A co-ordinated research programme on the use of nuclear and nuclear-related techniques in the study of environmental pollution associated with solid wastes was started by the IAEA in December 1987 and now comprises nineteen participants from seventeen countries. Topics of interest in this programme include studies of atmospheric aerosols, coal fly ash, incinerator ash, sewage sludge and a variety of other environmental specimens contaminated with solid wastes. The analytical techniques used include neutron activation analysis, particle-induced X-ray emission and energy-dispersive X-ray fluorescence. This report summarizes the discussions that took place during the third research co-ordination meeting. Working papers presented by the participants are included as annexes and have been indexed separately. Refs, figs and tabs

The B-MYB transcriptional network guides cell cycle progression and fate decisions to sustain self-renewal and the identity of pluripotent stem cells.

Science.gov (United States)

Zhan, Ming; Riordon, Daniel R; Yan, Bin; Tarasova, Yelena S; Bruweleit, Sarah; Tarasov, Kirill V; Li, Ronald A; Wersto, Robert P; Boheler, Kenneth R

2012-01-01

Embryonic stem cells (ESCs) are pluripotent and have unlimited self-renewal capacity. Although pluripotency and differentiation have been examined extensively, the mechanisms responsible for self-renewal are poorly understood and are believed to involve an unusual cell cycle, epigenetic regulators and pluripotency-promoting transcription factors. Here we show that B-MYB, a cell cycle regulated phosphoprotein and transcription factor critical to the formation of inner cell mass, is central to the transcriptional and co-regulatory networks that sustain normal cell cycle progression and self-renewal properties of ESCs. Phenotypically, B-MYB is robustly expressed in ESCs and induced pluripotent stem cells (iPSCs), and it is present predominantly in a hypo-phosphorylated state. Knockdown of B-MYB results in functional cell cycle abnormalities that involve S, G2 and M phases, and reduced expression of critical cell cycle regulators like ccnb1 and plk1. By conducting gene expression profiling on control and B-MYB deficient cells, ChIP-chip experiments, and integrative computational analyses, we unraveled a highly complex B-MYB-mediated transcriptional network that guides ESC self-renewal. The network encompasses critical regulators of all cell cycle phases and epigenetic regulators, pluripotency transcription factors, and differentiation determinants. B-MYB along with E2F1 and c-MYC preferentially co-regulate cell cycle target genes. B-MYB also co-targets genes regulated by OCT4, SOX2 and NANOG that are significantly associated with stem cell differentiation, embryonic development, and epigenetic control. Moreover, loss of B-MYB leads to a breakdown of the transcriptional hierarchy present in ESCs. These results coupled with functional studies demonstrate that B-MYB not only controls and accelerates cell cycle progression in ESCs it contributes to fate decisions and maintenance of pluripotent stem cell identity.

Transcriptional network systems in cartilage development and disease.

Science.gov (United States)

Nishimura, Riko; Hata, Kenji; Nakamura, Eriko; Murakami, Tomohiko; Takahata, Yoshifumi

2018-04-01

Transcription factors play important roles in the regulation of cartilage development by controlling the expression of chondrogenic genes. Genetic studies have revealed that Sox9/Sox5/Sox6, Runx2/Runx3 and Osterix in particular are essential for the sequential steps of cartilage development. Importantly, these transcription factors form network systems that are also required for appropriate cartilage development. Molecular cloning approaches have largely contributed to the identification of several transcriptional partners for Sox9 and Runx2 during cartilage development. Although the importance of a negative-feedback loop between Indian hedgehog (Ihh) and parathyroid hormone-related protein (PTHrP) in chondrocyte hypertrophy has been well established, recent studies indicate that several transcription factors interact with the Ihh-PTHrP loop and demonstrated that Ihh has multiple functions in the regulation of cartilage development. The most common cartilage disorder, osteoarthritis, has been reported to result from the pathological action of several transcription factors, including Runx2, C/EBPβ and HIF-2α. On the other hand, NFAT family members appear to play roles in the protection of cartilage from osteoarthritis. It is also becoming important to understand the homeostasis and regulation of articular chondrocytes, because they have different cellular and molecular features from chondrocytes of the growth plate. This review summarizes the regulation and roles of transcriptional network systems in cartilage development and their pathological roles in osteoarthritis.

Eurotrac: a co-ordinated project for applied tropospheric research

Energy Technology Data Exchange (ETDEWEB)

Borrell, P. [EUROTRAC International Scientific Secretariat, Garmisch-Partenkirchen (Germany)

1995-12-31

It was with the realisation that the scientific problems associated with regional air pollution could only be solved within the framework of an international interdisciplinary approach that in 1985 EUROTRAC, the European co-ordinated research project, was formed. Such an approach provides the scientific consensus necessary for the acceptance of regional air-pollution abatement measures by the countries affected. EUROTRAC is a EUREKA environmental project, studying the transport and chemical transformation of trace substances and pollutants in the troposphere. Three goals were specified the outset: (1) to increase the basic knowledge in atmospheric science, (2) to promote the technological development of sensitive, specific and fast response instruments for environmental research and development, and (3) to improve the scientific basis for taking future political decisions on environmental management in the European countries. Thus EUROTRAC was founded as a scientific project but had the specific intention that its results should be utilised in the formulation of policy. This presentation reviews the progress made towards each of the three goals and also indicates the proposed direction which a follow-on project is likely to take when EUROTRAC finishes at the end of 1995. (author)

Eurotrac: a co-ordinated project for applied tropospheric research

Energy Technology Data Exchange (ETDEWEB)

Borrell, P [EUROTRAC International Scientific Secretariat, Garmisch-Partenkirchen (Germany)

1996-12-31

It was with the realisation that the scientific problems associated with regional air pollution could only be solved within the framework of an international interdisciplinary approach that in 1985 EUROTRAC, the European co-ordinated research project, was formed. Such an approach provides the scientific consensus necessary for the acceptance of regional air-pollution abatement measures by the countries affected. EUROTRAC is a EUREKA environmental project, studying the transport and chemical transformation of trace substances and pollutants in the troposphere. Three goals were specified the outset: (1) to increase the basic knowledge in atmospheric science, (2) to promote the technological development of sensitive, specific and fast response instruments for environmental research and development, and (3) to improve the scientific basis for taking future political decisions on environmental management in the European countries. Thus EUROTRAC was founded as a scientific project but had the specific intention that its results should be utilised in the formulation of policy. This presentation reviews the progress made towards each of the three goals and also indicates the proposed direction which a follow-on project is likely to take when EUROTRAC finishes at the end of 1995. (author)

Co-ordinate expression of Th1/Th2 phenotypes in maternal and fetal blood: evidence for a transplacental nexus.

Science.gov (United States)

Tse, Doris B; Young, Bruce K

2012-01-06

If maternal atopy and environmental exposure affect prenatal Th cell development, the maternal and fetal immune systems should display common Th1/Th2 phenotypes. To test this hypothesis, we studied maternal and neonatal blood samples from mothers with total serum IgE ordinate IFN-γ production from paired maternal and fetal mononuclear cells, accompanied by co-ordinate increases in activated CD4+CD69+ cells that display the CCR4+Th2 and CXCR3+ Th1 phenotypes. Maternal and fetal CD4+CXCR3+ T cells were subsequently identified as the major producers of IFN-γ. The data established that a transplacental nexus exists during normal pregnancy and that fetal Th cell responses may be biased by the maternal immune system.

Improving yield and nitrogen fixation of grain legumes in the tropics and sub-tropics of Asia. Results of a co-ordinated research programme

International Nuclear Information System (INIS)

1998-07-01

The Joint FAO/IAEA Division of Nuclear Techniques in Food and Agriculture initiated a Co-ordinated Research Project on The Use of Isotopes in Studies to Improve Yield and N 2 Fixation of Grain Legumes with the Aim of Increasing Food Production and Saving N-fertilizer in the Tropics and Sub-Tropics of Asia that was operational from 1990 to 1995. This Project was underpinned by extensive experience in the use of 15 N-labelled fertilizer in quantifying N 2 fixation by food and pasture legumes; the isotope-dilution technique, recognized as the most accurate mode of quantifying fixation, was developed at the IAEA and has been used profitably for over 20 years in co-ordinated research projects that were focused on aspects relevant to the sustainability of agriculture in developing countries in which food security is most under threat. This effort to improve N 2 fixation by food legumes in Asia, and in so doing to increase productivity of cereal-based farming systems as a whole, was timely in terms of regional needs. It was complemented by an overlapping Co-ordinated Research Project entitled ''The Use of Nuclear and Related Techniques in Management of Nitrogen Fixation by trees for Enhancing Soil Fertility and Soil Conservation in Fragile Tropical Soils''. The project involved scientists from Australia, Bangladesh, China, India, Malaysia, Pakistan the Philippines, Sri Lanka, Thailand and Viet Nam

A co-ordinate system for reactor physics calculations in hexagonal geometry

International Nuclear Information System (INIS)

Burte, D.P.

1990-01-01

A method for generating all the geometric information concerning typical reactor physics calculations for a basically hexagonal reactor core or its sector involving any of the possible symmetries is presented. The geometrically allowed symmetries for regular hexagons are discussed. The approach is based on the choice of a suitable co-ordinate system, viz. one using three coplanar (including one redundant) axes, each at 120 0 with its cyclically preceding one. A code named KEKULE' is developed for a 2-D, finite difference, one-group diffusion analysis of a hexagonal core using the approach. It can cater to a full hexagonal core as well as to any symmetric sectorial part of it. The main feature of the code is that the input concerning geometry is a bare minimum. It is hoped that the approach presented will be useful even for the calculations for hexagonal fuel assemblies. (author)

In vitro mutation breeding of bananas and plantains. Final reports of an FAO/IAEA co-ordinated research programme from 1988 to 1993

International Nuclear Information System (INIS)

1995-06-01

This document contains 9 final reports of the participants at the FAO/IAEA co-ordinated research programme on 'In vitro mutation breeding of bananas and plantains'. A separate abstract was prepared for each report. Refs, figs and tabs

In vitro mutation breeding of bananas and plantains. Final reports of an FAO/IAEA co-ordinated research programme from 1988 to 1993

Energy Technology Data Exchange (ETDEWEB)

NONE

1995-06-01

This document contains 9 final reports of the participants at the FAO/IAEA co-ordinated research programme on `In vitro mutation breeding of bananas and plantains`. A separate abstract was prepared for each report. Refs, figs and tabs.

Summary report of the third research co-ordination meeting on measurement, calculation and evaluation of photon production data

International Nuclear Information System (INIS)

Oblozinsky, P.

1998-01-01

The present report contains the account of the last meeting of the Co-ordinated Research Project on ''Measurement, Calculation and Evaluation of Photon Production Data''. In addition to the summary of the meeting, the overall results achieved under the project in 1994-1997 are summarized, including the list of publications. The status of work on the Final Report of the project is also given. (author)

A transcription factor links growth rate and metabolism in the hypersaline adapted archaeon Halobacterium salinarum.

Science.gov (United States)

Todor, Horia; Dulmage, Keely; Gillum, Nicholas; Bain, James R; Muehlbauer, Michael J; Schmid, Amy K

2014-09-01

Co-ordinating metabolism and growth is a key challenge for all organisms. Despite fluctuating environments, cells must produce the same metabolic outputs to thrive. The mechanisms underlying this 'growth homeostasis' are known in bacteria and eukaryotes, but remain unexplored in archaea. In the model archaeon Halobacterium salinarum, the transcription factor TrmB regulates enzyme-coding genes in diverse metabolic pathways in response to glucose. However, H. salinarum is thought not to catabolize glucose. To resolve this discrepancy, we demonstrate that TrmB regulates the gluconeogenic production of sugars incorporated into the cell surface S-layer glycoprotein. Additionally, we show that TrmB-DNA binding correlates with instantaneous growth rate, likely because S-layer glycosylation is proportional to growth. This suggests that TrmB transduces a growth rate signal to co-regulated metabolic pathways including amino acid, purine, and cobalamin biosynthesis. Remarkably, the topology and function of this growth homeostatic network appear conserved across domains despite extensive alterations in protein components. © 2014 The Authors. Molecular Microbiology published by John Wiley & Sons Ltd.

Using network component analysis to dissect regulatory networks mediated by transcription factors in yeast.

Directory of Open Access Journals (Sweden)

Chun Ye

2009-03-01

Full Text Available Understanding the relationship between genetic variation and gene expression is a central question in genetics. With the availability of data from high-throughput technologies such as ChIP-Chip, expression, and genotyping arrays, we can begin to not only identify associations but to understand how genetic variations perturb the underlying transcription regulatory networks to induce differential gene expression. In this study, we describe a simple model of transcription regulation where the expression of a gene is completely characterized by two properties: the concentrations and promoter affinities of active transcription factors. We devise a method that extends Network Component Analysis (NCA to determine how genetic variations in the form of single nucleotide polymorphisms (SNPs perturb these two properties. Applying our method to a segregating population of Saccharomyces cerevisiae, we found statistically significant examples of trans-acting SNPs located in regulatory hotspots that perturb transcription factor concentrations and affinities for target promoters to cause global differential expression and cis-acting genetic variations that perturb the promoter affinities of transcription factors on a single gene to cause local differential expression. Although many genetic variations linked to gene expressions have been identified, it is not clear how they perturb the underlying regulatory networks that govern gene expression. Our work begins to fill this void by showing that many genetic variations affect the concentrations of active transcription factors in a cell and their affinities for target promoters. Understanding the effects of these perturbations can help us to paint a more complete picture of the complex landscape of transcription regulation. The software package implementing the algorithms discussed in this work is available as a MATLAB package upon request.

Case of cholera preparedness, response and prevention in the SADC region: A need for proactive and multi-level communication and co-ordination

CSIR Research Space (South Africa)

Said, MD

2011-10-01

Full Text Available In this paper the authors seek to identify the most appropriate model for a regional co-ordination mechanism for cholera preparedness, response and prevention. The qualitative mixed-method data collection approach that was followed revealed the need...

The fourth UNDP/RCA/IAEA/meeting of national co-ordinators for radiation technology. Report

International Nuclear Information System (INIS)

1996-01-01

The objectives of the Meeting were to provide information for the Terminal Report of the joint UNDP/RCA/IAEA project RAS/92/073 and to look into future activities under the Radiation Technology project. The main achievements of this Meeting are: The Meeting reviewed the implementation of all radiation technology sub-projects and agreed that all of them were successful but not yet equally developed among RCA Member States. The Meeting recommended to have three projects carried out in the form of Co-ordinated Research Programs and requested the IAEA to find new ways to implement the organized in RCA Member States to carry these CRPs out. Figs, tabs

Nuclear techniques in the coal industry. Proceedings of a final research co-ordination meeting

Energy Technology Data Exchange (ETDEWEB)

NONE

1995-11-01

With the aim of promoting advanced research and facilitating a more extensive application of nuclear techniques for environmental protection in the exploration and exploitation of coal, the IAEA established the present co-ordinated research programme (CRP) in 1989. This report includes an assessment of the current status and trends in nuclear techniques in the coal industry and the results obtained by the participants at the CRP. Proceedings of the final CRP on ``Nuclear Techniques in Exploration and Exploitation of Coal: On-line and Bulk Analysis and Evaluation of Potential Environmental Pollutants in Coal and Coke``, was held in Krakow, Poland, from 9 to 12 May 1994. Refs, figs, tabs.

Transcriptional delay stabilizes bistable gene networks.

Science.gov (United States)

Gupta, Chinmaya; López, José Manuel; Ott, William; Josić, Krešimir; Bennett, Matthew R

2013-08-02

Transcriptional delay can significantly impact the dynamics of gene networks. Here we examine how such delay affects bistable systems. We investigate several stochastic models of bistable gene networks and find that increasing delay dramatically increases the mean residence times near stable states. To explain this, we introduce a non-Markovian, analytically tractable reduced model. The model shows that stabilization is the consequence of an increased number of failed transitions between stable states. Each of the bistable systems that we simulate behaves in this manner.

A systematic review of instruments for assessment of capacity in activities of daily living in children with developmental co-ordination disorder

NARCIS (Netherlands)

van der Linde, B W; van Netten, J J; Otten, E; Postema, K; Geuze, R H; Schoemaker, M M

Children with developmental co-ordination disorder (DCD) face evident motor difficulties in activities of daily living (ADL). Assessment of their capacity in ADL is essential for diagnosis and intervention, in order to limit the daily consequences of the disorder. The aim of this study is to

TcoF-DB: dragon database for human transcription co-factors and transcription factor interacting proteins

KAUST Repository

Schaefer, Ulf; Schmeier, Sebastian; Bajic, Vladimir B.

2010-01-01

The initiation and regulation of transcription in eukaryotes is complex and involves a large number of transcription factors (TFs), which are known to bind to the regulatory regions of eukaryotic DNA. Apart from TF-DNA binding, protein-protein interaction involving TFs is an essential component of the machinery facilitating transcriptional regulation. Proteins that interact with TFs in the context of transcription regulation but do not bind to the DNA themselves, we consider transcription co-factors (TcoFs). The influence of TcoFs on transcriptional regulation and initiation, although indirect, has been shown to be significant with the functionality of TFs strongly influenced by the presence of TcoFs. While the role of TFs and their interaction with regulatory DNA regions has been well-studied, the association between TFs and TcoFs has so far been given less attention. Here, we present a resource that is comprised of a collection of human TFs and the TcoFs with which they interact. Other proteins that have a proven interaction with a TF, but are not considered TcoFs are also included. Our database contains 157 high-confidence TcoFs and additionally 379 hypothetical TcoFs. These have been identified and classified according to the type of available evidence for their involvement in transcriptional regulation and their presence in the cell nucleus. We have divided TcoFs into four groups, one of which contains high-confidence TcoFs and three others contain TcoFs which are hypothetical to different extents. We have developed the Dragon Database for Human Transcription Co-Factors and Transcription Factor Interacting Proteins (TcoF-DB). A web-based interface for this resource can be freely accessed at http://cbrc.kaust.edu.sa/tcof/ and http://apps.sanbi.ac.za/tcof/. © The Author(s) 2010.

TcoF-DB: dragon database for human transcription co-factors and transcription factor interacting proteins

KAUST Repository

Schaefer, Ulf

2010-10-21

The initiation and regulation of transcription in eukaryotes is complex and involves a large number of transcription factors (TFs), which are known to bind to the regulatory regions of eukaryotic DNA. Apart from TF-DNA binding, protein-protein interaction involving TFs is an essential component of the machinery facilitating transcriptional regulation. Proteins that interact with TFs in the context of transcription regulation but do not bind to the DNA themselves, we consider transcription co-factors (TcoFs). The influence of TcoFs on transcriptional regulation and initiation, although indirect, has been shown to be significant with the functionality of TFs strongly influenced by the presence of TcoFs. While the role of TFs and their interaction with regulatory DNA regions has been well-studied, the association between TFs and TcoFs has so far been given less attention. Here, we present a resource that is comprised of a collection of human TFs and the TcoFs with which they interact. Other proteins that have a proven interaction with a TF, but are not considered TcoFs are also included. Our database contains 157 high-confidence TcoFs and additionally 379 hypothetical TcoFs. These have been identified and classified according to the type of available evidence for their involvement in transcriptional regulation and their presence in the cell nucleus. We have divided TcoFs into four groups, one of which contains high-confidence TcoFs and three others contain TcoFs which are hypothetical to different extents. We have developed the Dragon Database for Human Transcription Co-Factors and Transcription Factor Interacting Proteins (TcoF-DB). A web-based interface for this resource can be freely accessed at http://cbrc.kaust.edu.sa/tcof/ and http://apps.sanbi.ac.za/tcof/. © The Author(s) 2010.

Role of the N-terminal activation domain of coactivator CoCoA in mediating transcriptional activation by β-catenin*

OpenAIRE

Yang, Catherine K.; Kim, Jeong Hoon; Stallcup, Michael R.

2006-01-01

The coiled-coil coactivator (CoCoA) is involved in transcriptional activation of target genes by nuclear receptors and the xenobiotic aryl hydrocarbon receptor, as well as target genes of the Wnt signaling pathway, which is mediated by the lymphocyte enhancer factor (LEF)/T cell factor transcription factors and the coactivator β-catenin. The recruitment of CoCoA by nuclear receptors is accomplished by the interaction of the central coiled-coiled domain of CoCoA with p160 coactivators; the C-t...

Three ancient hormonal cues co-ordinate shoot branching in a moss.

Science.gov (United States)

Coudert, Yoan; Palubicki, Wojtek; Ljung, Karin; Novak, Ondrej; Leyser, Ottoline; Harrison, C Jill

2015-03-25

Shoot branching is a primary contributor to plant architecture, evolving independently in flowering plant sporophytes and moss gametophytes. Mechanistic understanding of branching is largely limited to flowering plants such as Arabidopsis, which have a recent evolutionary origin. We show that in gametophytic shoots of Physcomitrella, lateral branches arise by re-specification of epidermal cells into branch initials. A simple model co-ordinating the activity of leafy shoot tips can account for branching patterns, and three known and ancient hormonal regulators of sporophytic branching interact to generate the branching pattern- auxin, cytokinin and strigolactone. The mode of auxin transport required in branch patterning is a key divergence point from known sporophytic pathways. Although PIN-mediated basipetal auxin transport regulates branching patterns in flowering plants, this is not so in Physcomitrella, where bi-directional transport is required to generate realistic branching patterns. Experiments with callose synthesis inhibitors suggest plasmodesmal connectivity as a potential mechanism for transport.

Improvements in the quality of co-ordination of nursing care following implementation of the Resident Assessment Instrument in Dutch nursing homes.

NARCIS (Netherlands)

Achterberg, W.P.; Holtkamp, C.C.M.; Kerkstra, A.; Pot, A.M.; Ooms, M.E.; Ribbe, M.W.

2001-01-01

Aim: To study the effect of implementation of the Resident Assessment Instrument (RAI) on the quality of co-ordination of nursing care in Dutch nursing homes. Background: The Resident Assessment Instrument (RAI) was designed to improve the quality of care and quality of life in nursing homes. Until

Irradiated sewage sludge for application to cropland. Results of a co-ordinated research project

Energy Technology Data Exchange (ETDEWEB)

NONE

2002-10-01

Modern urban societies produce large volumes of sewage, which are transported through a network of underground sewers to wastewater treatment plants, where one or more stages of physical, biological and chemical treatment are imposed. Considerable tonnages of aerobically, and sometimes anaerobically, digested sludge are produced, and treated or untreated effluent is discharged to lagoons, waterways or the ocean. The disposal of sewage sludge is a major issue for municipal authorities. There are increasing legislative restrictions in many countries on disposal methods (e.g. incineration, landfill, composting) including surface application to agricultural land. Sludge can either be viewed as a dangerous waste requiring expensive disposal procedures, or it can be seen as a resource for possible use in agriculture as a soil conditioning agent and a source of plant nutrients. Untreated sewage sludge presents a public-health hazard as it contains human pathogens, including bacteria, viruses and other harmful organisms. Although it has been demonstrated that an appropriate dose of gamma-irradiation can eliminate human parasites and bacterial pathogens from sewage sludge, there is still public concern about the presence of viruses, as well as heavy metals and toxic organic compounds from industrial sources that could enter the food chain if sludge is applied to croplands. More information is also needed on the value of sludge as a source of plant nutrients, expressed in terms of fertilizer equivalence. In this regard, isotopic labelling techniques have a unique role to play in estimating the contribution of sewage sludge to crop nutrition. As a result of recommendations formulated at a Consultants Meeting organized by the Joint FAO/IAEA Division of Nuclear Techniques in Food and Agriculture and the IAEA Division of Physical and Chemical Sciences, 5-9 December 1994 (IAEA-TECDOC-971, Sewage Sludge and Wastewater for Use in Agriculture) the Joint Division implemented a Co-ordinated

Co-regulation of metabolic genes is better explained by flux coupling than by network distance.

Directory of Open Access Journals (Sweden)

Richard A Notebaart

2008-01-01

Full Text Available To what extent can modes of gene regulation be explained by systems-level properties of metabolic networks? Prior studies on co-regulation of metabolic genes have mainly focused on graph-theoretical features of metabolic networks and demonstrated a decreasing level of co-expression with increasing network distance, a naïve, but widely used, topological index. Others have suggested that static graph representations can poorly capture dynamic functional associations, e.g., in the form of dependence of metabolic fluxes across genes in the network. Here, we systematically tested the relative importance of metabolic flux coupling and network position on gene co-regulation, using a genome-scale metabolic model of Escherichia coli. After validating the computational method with empirical data on flux correlations, we confirm that genes coupled by their enzymatic fluxes not only show similar expression patterns, but also share transcriptional regulators and frequently reside in the same operon. In contrast, we demonstrate that network distance per se has relatively minor influence on gene co-regulation. Moreover, the type of flux coupling can explain refined properties of the regulatory network that are ignored by simple graph-theoretical indices. Our results underline the importance of studying functional states of cellular networks to define physiologically relevant associations between genes and should stimulate future developments of novel functional genomic tools.

IAEA technical meeting: Assess and co-ordinate modelling needs and data providers. Summary report

International Nuclear Information System (INIS)

Clark, R.E.H.

2004-05-01

This report briefly describes the proceedings, conclusions and recommendations of the Technical Meeting to 'Assess and Co-ordinate Modelling Needs and Data Providers', held on 4-5 December 2003. Eight international experts on atomic and molecular data related to fusion energy research activities participated in the meeting. Each participant reviewed the current status of their own speciality and current lines of research as well as anticipated needs in new data for nuclear fusion energy research. Current CRPs on related topics were reviewed. In light of current research activities and anticipated data needs for fusion, a detailed set of tasks appropriate for a new CRP was developed. This meeting completely fulfilled the specified goals. (author)

Transcriptional control in the segmentation gene network of Drosophila.

Directory of Open Access Journals (Sweden)

Mark D Schroeder

2004-09-01

Full Text Available The segmentation gene network of Drosophila consists of maternal and zygotic factors that generate, by transcriptional (cross- regulation, expression patterns of increasing complexity along the anterior-posterior axis of the embryo. Using known binding site information for maternal and zygotic gap transcription factors, the computer algorithm Ahab recovers known segmentation control elements (modules with excellent success and predicts many novel modules within the network and genome-wide. We show that novel module predictions are highly enriched in the network and typically clustered proximal to the promoter, not only upstream, but also in intronic space and downstream. When placed upstream of a reporter gene, they consistently drive patterned blastoderm expression, in most cases faithfully producing one or more pattern elements of the endogenous gene. Moreover, we demonstrate for the entire set of known and newly validated modules that Ahab's prediction of binding sites correlates well with the expression patterns produced by the modules, revealing basic rules governing their composition. Specifically, we show that maternal factors consistently act as activators and that gap factors act as repressors, except for the bimodal factor Hunchback. Our data suggest a simple context-dependent rule for its switch from repressive to activating function. Overall, the composition of modules appears well fitted to the spatiotemporal distribution of their positive and negative input factors. Finally, by comparing Ahab predictions with different categories of transcription factor input, we confirm the global regulatory structure of the segmentation gene network, but find odd skipped behaving like a primary pair-rule gene. The study expands our knowledge of the segmentation gene network by increasing the number of experimentally tested modules by 50%. For the first time, the entire set of validated modules is analyzed for binding site composition under a

Reconstructing transcriptional regulatory networks through genomics data

OpenAIRE

Sun, Ning; Zhao, Hongyu

2009-01-01

One central problem in biology is to understand how gene expression is regulated under different conditions. Microarray gene expression data and other high throughput data have made it possible to dissect transcriptional regulatory networks at the genomics level. Owing to the very large number of genes that need to be studied, the relatively small number of data sets available, the noise in the data and the different natures of the distinct data types, network inference presents great challen...

Method for designing networking adaptive interactive hybrid systems

NARCIS (Netherlands)

Kester, L. J.H.M.

2010-01-01

Advances in network technologies enable distributed systems, operating in complex physical environments, to co-ordinate their activities over larger areas within shorter time intervals. Some envisioned application domains for such systems are defence, crisis management, traffic management and public

Co-ordinated research programme on operator support systems in nuclear power plants. Working material. Report of a research co-ordinated meeting held in Rome, 10-14 October 1994

International Nuclear Information System (INIS)

1995-01-01

In September 1991, the IAEA Committee for Contractual Scientific Services approved the Co-ordinated Research Programme (CRP) on ''Operator Support Systems (OPS) in Nuclear Power Plants'' in the framework of the Project ''Man-Machine Interface Studies''. The main objective of the programme is to provide guidance and technology transfer in the development and implementation of OSSs, including the experience with man-machine interface and closely related issues such as instrumentation and control, the use of computers, and operator qualification. The third meeting of the CRP participants was held in Rome/Italy, from 10 to 14 October 1994 and was sponsored by the ANPA. The meeting reviewed the progress of the CRP tasks, considered the reports of national activities in the subject area and agreed on the time scheduled for the preparation of the final report. The present volume contains: materials prepared by the CRP meeting; list of the CRP participants; and reports presented by the national delegates. Refs, figs and tabs

Co-ordinated research programme on operator support systems in nuclear power plants. Working material. Report of a research co-ordinated meeting held in Rome, 10-14 October 1994

Energy Technology Data Exchange (ETDEWEB)

NONE

1995-06-01

In September 1991, the IAEA Committee for Contractual Scientific Services approved the Co-ordinated Research Programme (CRP) on ``Operator Support Systems (OSS) in Nuclear Power Plants`` in the framework of the Project ``Man-Machine Interface Studies``. The main objective of the programme is to provide guidance and technology transfer in the development and implementation of OSSs, including the experience with man-machine interface and closely related issues such as instrumentation and control, the use of computers, and operator qualification. The third meeting of the CRP participants was held in Rome/Italy, from 10 to 14 October 1994 and was sponsored by the ANPA. The meeting reviewed the progress of the CRP tasks, considered the reports of national activities in the subject area and agreed on the time scheduled for the preparation of the final report. The present volume contains: materials prepared by the CRP meeting; list of the CRP participants; and reports presented by the national delegates. Refs, figs and tabs.

A report on the IAEA co-ordinated research programme on the Application of Isotopic Correlation Techniques to international safeguards 1975-1982

International Nuclear Information System (INIS)

Sanatani, S.

1983-01-01

A co-ordinated research programme on the Application of Isotopic Correlation Techniques (ICT) to International Safeguards has just ended in the Agency. During the continuation of the programme, scientists from Belgium, Japan, France, United Kingdom, United States and Euratom, engaged in the development of ICT, met periodically to discuss the results obtained by them from both theoretical and experimental investigations. The paper describes the main features of the alternative approaches developed at participating laboratories as well as procedures developed at the IAEA. At the conclusion of the programme, there was an unanimous recommendation from the participants that ICT is a useful tool for verification of input analysis at a chemical reprocessing plant. After the closure of the co-ordinated research programme, the IAEA is now applying data evaluation procedures developed at the Agency and keeping in contact with the progress of work on ICT carried on in laboratories such as JAERI (Japan), CEA (France) and Euratom, through support programmes and through participation in the ESARDA working group dealing with ICT

Summary report of the second research co-ordination meeting on measurement, calculation and evaluation of photon production data

International Nuclear Information System (INIS)

Oblozinsky, P.

1996-12-01

The present report contains the summary of the Second Research Co-ordination Meeting on ''Measurement, Calculation and Evaluation of Photon Production Data'', held in Vienna, Austria, from 21 to 24 May 1996. Summarized are conclusions and recommendations of the meeting together with a detailed list of actions and deadlines, including procedures to prepare the final document of the project. Attached is the agenda of the meeting, list of participants and extended abstracts of their presentations. (author). Refs, figs, tabs

Improvement of basic food crops in Africa through plant breeding, including the use of induced mutations. Proceedings of a final research co-ordination meeting

Energy Technology Data Exchange (ETDEWEB)

NONE

1997-07-01

The Co-ordinated Research Programme (CRP) on Improvement of Basic Food Crops in Africa Through Plant Breeding, Including the Use of Induced Mutations, funded by the Italian Government, was initiated in 1989 in the Joint FAO/IAEA Division of Nuclear Techniques in Food and Agriculture. The primary objective of this CRP was to breed improved varieties of stable food crops of Africa with the main emphasis on the indigenous species and their local cultivars. The fourth and final Research Co-ordination meeting under the CRP was held in Naples, Italy from 30 October - 3 November 1995. This publication includes the reports, conclusions and recommendations made by the participants. We hope that it will be of value to researchers, students and policy makers alike in their endeavour to promote plant breeding and increase food productions in Africa. Refs, figs, tabs.

Improvement of basic food crops in Africa through plant breeding, including the use of induced mutations. Proceedings of a final research co-ordination meeting

International Nuclear Information System (INIS)

1997-07-01

The Co-ordinated Research Programme (CRP) on Improvement of Basic Food Crops in Africa Through Plant Breeding, Including the Use of Induced Mutations, funded by the Italian Government, was initiated in 1989 in the Joint FAO/IAEA Division of Nuclear Techniques in Food and Agriculture. The primary objective of this CRP was to breed improved varieties of stable food crops of Africa with the main emphasis on the indigenous species and their local cultivars. The fourth and final Research Co-ordination meeting under the CRP was held in Naples, Italy from 30 October - 3 November 1995. This publication includes the reports, conclusions and recommendations made by the participants. We hope that it will be of value to researchers, students and policy makers alike in their endeavour to promote plant breeding and increase food productions in Africa. Refs, figs, tabs

Co-ordinated research project on isotopic evaluations of maternal and child health nutrition to help prevent stunting. Report on the 1. research co-ordination meeting

International Nuclear Information System (INIS)

1999-01-01

The concept for the Co-ordinated Research Programme on isotopic evaluations of maternal and child nutrition to help prevent stunting was a consequence of discussions held between IAEA staff and participants in a regional training course on 'Isotope Techniques in Human Nutrition' held in Lima, Peru in June 1996. The intention then was to develop research on factors influencing the success of lactation and the consequent effects on the breast-fed child. The project would have Latin American participants to promote regional exchange of expertise and ideas. Initial participation was from Argentina, Chile, Mexico, Peru and Venezuela. Brazil and Pakistan have now been added to these. There are three Specific Research Objectives: (1) To develop stable isotope methods for measuring breast-milk intake using regionally available equipment. (2) To apply the methodology in the assessment of milk intake in infants in relation to maternal nutrition, socio-economic status and education, and infant nutrition and intake of macro- and micro-nutrients. (3) To use information gathered at 2) to determine the need for supplementation programmes for mothers and/or infants, and educational programmes for the mothers

Co-ordinated research project on isotopic evaluations of maternal and child health nutrition to help prevent stunting. Report on the 1. research co-ordination meeting

Energy Technology Data Exchange (ETDEWEB)

NONE

1999-09-01

The concept for the Co-ordinated Research Programme on isotopic evaluations of maternal and child nutrition to help prevent stunting was a consequence of discussions held between IAEA staff and participants in a regional training course on `Isotope Techniques in Human Nutrition` held in Lima, Peru in June 1996. The intention then was to develop research on factors influencing the success of lactation and the consequent effects on the breast-fed child. The project would have Latin American participants to promote regional exchange of expertise and ideas. Initial participation was from Argentina, Chile, Mexico, Peru and Venezuela. Brazil and Pakistan have now been added to these. There are three Specific Research Objectives: (1) To develop stable isotope methods for measuring breast-milk intake using regionally available equipment. (2) To apply the methodology in the assessment of milk intake in infants in relation to maternal nutrition, socio-economic status and education, and infant nutrition and intake of macro- and micro-nutrients. (3) To use information gathered at 2) to determine the need for supplementation programmes for mothers and/or infants, and educational programmes for the mothers Refs, figs, tabs, graphs

"Getting Practical" and the National Network of Science Learning Centres

Science.gov (United States)

Chapman, Georgina; Langley, Mark; Skilling, Gus; Walker, John

2011-01-01

The national network of Science Learning Centres is a co-ordinating partner in the Getting Practical--Improving Practical Work in Science programme. The principle of training provision for the "Getting Practical" programme is a cascade model. Regional trainers employed by the national network of Science Learning Centres trained the cohort of local…

Co-ordination and Lock-in: Competition with Switching Costs and Network Effects

OpenAIRE

Joseph Farrell; Paul Klemperer

2006-01-01

Switching costs and network effects bind customers to vendors if products are incompatible, locking customers or even markets in to early choices. Lock-in hinders customers from changing suppliers in response to (predictable or unpredictable) changes in effciency, and gives vendors lucrative ex post market power-over the same buyer in the case of switching costs (or brand loyalty), or over others with network effects. Firms compete ex ante for this ex post power, using penetration pricing, in...

New methods and techniques for decontamination in maintenance or decommissioning operations. Results of a co-ordinated research programme 1994-1998

International Nuclear Information System (INIS)

1998-06-01

Decontamination of nuclear facilities is a subject of increasing importance as the nuclear community considers the issues related to the decommissioning of surplus or obsolete facilities and making modifications to operational facilities, or conducts the necessary inspections and maintenance to permit continued efficient and safe operation of existing facilities. Previous co-ordinated research programmes (CRP) conducted respectively from 1984 to 1987, and from 1989 to 1993, highlighted the role of decontamination within the overall domain of decommissioning. Having recognized technological progress in decontamination and the large potential for optimization, the CRP on New Methods and Techniques for Optimization of Decontamination for Maintenance or Decommissioning was launched and conducted by the IAEA from 1994 to 1998. Concluding reports that summarized the work undertaken under the aegis of the CRP were presented at the third and final Research Co-ordination Meeting (RCM) held in Mol, Belgium, 12-16 January 1998 and are collected in this Technical Document. Operating experience in real-scale applications, lessons learned, key results in laboratory scale or pilot scale research, and validation of mathematical models, are among the most significant achievements of the CRP and have been highlighted

Iterative reconstruction of transcriptional regulatory networks: an algorithmic approach.

Directory of Open Access Journals (Sweden)

Christian L Barrett

2006-05-01

Full Text Available The number of complete, publicly available genome sequences is now greater than 200, and this number is expected to rapidly grow in the near future as metagenomic and environmental sequencing efforts escalate and the cost of sequencing drops. In order to make use of this data for understanding particular organisms and for discerning general principles about how organisms function, it will be necessary to reconstruct their various biochemical reaction networks. Principal among these will be transcriptional regulatory networks. Given the physical and logical complexity of these networks, the various sources of (often noisy data that can be utilized for their elucidation, the monetary costs involved, and the huge number of potential experiments approximately 10(12 that can be performed, experiment design algorithms will be necessary for synthesizing the various computational and experimental data to maximize the efficiency of regulatory network reconstruction. This paper presents an algorithm for experimental design to systematically and efficiently reconstruct transcriptional regulatory networks. It is meant to be applied iteratively in conjunction with an experimental laboratory component. The algorithm is presented here in the context of reconstructing transcriptional regulation for metabolism in Escherichia coli, and, through a retrospective analysis with previously performed experiments, we show that the produced experiment designs conform to how a human would design experiments. The algorithm is able to utilize probability estimates based on a wide range of computational and experimental sources to suggest experiments with the highest potential of discovering the greatest amount of new regulatory knowledge.

Epigenomic Co-localization and Co-evolution Reveal a Key Role for 5hmC as a Communication Hub in the Chromatin Network of ESCs

Directory of Open Access Journals (Sweden)

David Juan

2016-02-01

Full Text Available Summary: Epigenetic communication through histone and cytosine modifications is essential for gene regulation and cell identity. Here, we propose a framework that is based on a chromatin communication model to get insight on the function of epigenetic modifications in ESCs. The epigenetic communication network was inferred from genome-wide location data plus extensive manual annotation. Notably, we found that 5-hydroxymethylcytosine (5hmC is the most-influential hub of this network, connecting DNA demethylation to nucleosome remodeling complexes and to key transcription factors of pluripotency. Moreover, an evolutionary analysis revealed a central role of 5hmC in the co-evolution of chromatin-related proteins. Further analysis of regions where 5hmC co-localizes with specific interactors shows that each interaction points to chromatin remodeling, stemness, differentiation, or metabolism. Our results highlight the importance of cytosine modifications in the epigenetic communication of ESCs. : 5-hydroxymethylcytosine (5hmC plays a key role in the epigenomic communication network of embryonic stem cells. Juan et al. build a communication network based in co-localization of epigenomic data and literature. The analysis of the network and its components reveals that proteins reading and editing 5hmC co-evolve and serve as links between diverse molecular processes.

The use of 18O enrichment to determine the mode of co-ordination in MXO3 species via infrared frequency and intensity patterns: the shape of matrix-isolated KNO3

International Nuclear Information System (INIS)

Beattie, I.R.; Ogden, J.S.; Price, D.D.

1979-01-01

This paper describes a new experimental approach to the problem of determining the mode of co-ordination of [XO 3 ]sup(n-) ions (e.g. [NO 3 ] - , [CO 3 ] 2- ). Using the nitrate ion as an example, it is shown, via line diagrams, that a qualitative distinction between monodentate and bidentate binding should be possible simply by noting the number and relative intensities of isotope bands associated with the highest frequency N-O stretching mode in the i.r. spectrum of the 18 O-enriched material. The method is illustrated by reference to the matrix i.r. spectrum of molecular KNO 3 , where the initial qualitative conclusion of bidentate co-ordination is confirmed by subsequent force-constant analysis. (author)

Comparison of gene co-networks reveals the molecular mechanisms of the rice (Oryza sativa L.) response to Rhizoctonia solani AG1 IA infection.

Science.gov (United States)

Zhang, Jinfeng; Zhao, Wenjuan; Fu, Rong; Fu, Chenglin; Wang, Lingxia; Liu, Huainian; Li, Shuangcheng; Deng, Qiming; Wang, Shiquan; Zhu, Jun; Liang, Yueyang; Li, Ping; Zheng, Aiping

2018-05-05

Rhizoctonia solani causes rice sheath blight, an important disease affecting the growth of rice (Oryza sativa L.). Attempts to control the disease have met with little success. Based on transcriptional profiling, we previously identified more than 11,947 common differentially expressed genes (TPM > 10) between the rice genotypes TeQing and Lemont. In the current study, we extended these findings by focusing on an analysis of gene co-expression in response to R. solani AG1 IA and identified gene modules within the networks through weighted gene co-expression network analysis (WGCNA). We compared the different genes assigned to each module and the biological interpretations of gene co-expression networks at early and later modules in the two rice genotypes to reveal differential responses to AG1 IA. Our results show that different changes occurred in the two rice genotypes and that the modules in the two groups contain a number of candidate genes possibly involved in pathogenesis, such as the VQ protein. Furthermore, these gene co-expression networks provide comprehensive transcriptional information regarding gene expression in rice in response to AG1 IA. The co-expression networks derived from our data offer ideas for follow-up experimentation that will help advance our understanding of the translational regulation of rice gene expression changes in response to AG1 IA.

Elucidating gene function and function evolution through comparison of co-expression networks in plants

Directory of Open Access Journals (Sweden)

Marek eMutwil

2014-08-01

Full Text Available The analysis of gene expression data has shown that transcriptionally coordinated (co-expressed genes are often functionally related, enabling scientists to use expression data in gene function prediction. This Focused Review discusses our original paper (Large-scale co-expression approach to dissect secondary cell wall formation across plant species, Frontiers in Plant Science 2:23. In this paper we applied cross-species analysis to co-expression networks of genes involved in cellulose biosynthesis. We show that the co-expression networks from different species are highly similar, indicating that whole biological pathways are conserved across species. This finding has two important implications. First, the analysis can transfer gene function annotation from well-studied plants, such as Arabidopsis, to other, uncharacterized plant species. As the analysis finds genes that have similar sequence and similar expression pattern across different organisms, functionally equivalent genes can be identified. Second, since co-expression analyses are often noisy, a comparative analysis should have higher performance, as parts of co-expression networks that are conserved are more likely to be functionally relevant. In this Focused Review, we outline the comparative analysis done in the original paper and comment on the recent advances and approaches that allow comparative analyses of co-function networks. We hypothesize that, in comparison to simple co-expression analysis, comparative analysis would yield more accurate gene function predictions. Finally, by combining comparative analysis with genomic information of green plants, we propose a possible composition of cellulose biosynthesis machinery during earlier stages of plant evolution.

Co-ordinated research programme on isotope-aided studies of the bioavailability of iron and zinc from human diets

International Nuclear Information System (INIS)

1992-01-01

Nutritional deficiencies of essential micronutrients (particularly of iron, but also of zinc and selenium) are known to affect hundreds of millions of people throughout the world, mainly in developing countries. Such deficiencies can lead to significant deficits in mental development, growth, work performance, immune competence and other biological parameters. In many of the population groups that are affected, the deficiencies are thought to be due not to an absolute lack of the element in the diet but rather to is poor bioavailability. Much work has already been done on this subject, particularly in some developed countries and particularly with respect to iron. However, there is still appears to be a need for more research on factors affecting bioavailability and the means to improve it by simple dietary modification and fortification using food products of the kind that may be locally available in developing countries. Isotope techniques potentially have a large role to play in studies of the bioavailability of iron and other trace elements. To support work in this area, the IAEA initiated a Co-ordinated Research Programme (CRP) at the end of 1990 on ''Isotope-Aided Studies of the Bioavailability of Iron and Zinc from Human Diets''. The first Research Co-ordination Meeting (RCM) of participants in this CRP is the subject of the present report. Refs, figs and tabs

Further analysis of extended storage of spent fuel. Final report of a co-ordinated research programme on the behaviour of spent fuel assemblies during extended storage (BEFAST-III) 1991-1996

International Nuclear Information System (INIS)

1997-05-01

Considerable quantities of spent fuel continue to be produced and to accumulate in a number of countries. Although some new reprocessing facilities have been constructed, many countries are investigating the option of extended spent fuel storage prior to reprocessing or fuel disposal. Wet storage continues to predominate as an established technology. However, dry storage is becoming increasingly used with many countries considering dry storage for the longer term. This Technical Document is the final report of the IAEA Co-ordinated Research Programme on the Behaviour of Spent Fuel Assemblies During Extended Storage (BEFAST-III, 1991-1996). It contains analyses of wet and dry spent fuel storage technologies obtained from 16 organizations representing 13 countries (Canada, Finland, France, Germany, Hungary, the Republic of Korea, Japan, the Russian Federation, Slovakia, Spain, Sweden, the United Kingdom and the USA) which participated in the co-ordinated research programme as participants or observers. The report contains information presented during the three Research Co-ordination meetings and also data which were submitted by the participants in response to request by the Scientific Secretary. 48 refs, 4 tabs

Co-ordination of the international network of nuclear structure and decay data evaluators

International Nuclear Information System (INIS)

Lorenz, A.

1986-10-01

The seventh meeting of the International Network of Nuclear Structure and Decay Data (NSDD) Evaluators concentrated on the organizational aspects of the coordination of the NSDD network and on the presentation and discussion of papers related to the physics of evaluation of NSDD. The report contains short status reports from NSDD Network members, the status of the mass-chain and nuclear structure data, a discussion of evaluation rules and procedures and a short presentation of the next activities

Circuit-wide Transcriptional Profiling Reveals Brain Region-Specific Gene Networks Regulating Depression Susceptibility.

Science.gov (United States)

Bagot, Rosemary C; Cates, Hannah M; Purushothaman, Immanuel; Lorsch, Zachary S; Walker, Deena M; Wang, Junshi; Huang, Xiaojie; Schlüter, Oliver M; Maze, Ian; Peña, Catherine J; Heller, Elizabeth A; Issler, Orna; Wang, Minghui; Song, Won-Min; Stein, Jason L; Liu, Xiaochuan; Doyle, Marie A; Scobie, Kimberly N; Sun, Hao Sheng; Neve, Rachael L; Geschwind, Daniel; Dong, Yan; Shen, Li; Zhang, Bin; Nestler, Eric J

2016-06-01

Depression is a complex, heterogeneous disorder and a leading contributor to the global burden of disease. Most previous research has focused on individual brain regions and genes contributing to depression. However, emerging evidence in humans and animal models suggests that dysregulated circuit function and gene expression across multiple brain regions drive depressive phenotypes. Here, we performed RNA sequencing on four brain regions from control animals and those susceptible or resilient to chronic social defeat stress at multiple time points. We employed an integrative network biology approach to identify transcriptional networks and key driver genes that regulate susceptibility to depressive-like symptoms. Further, we validated in vivo several key drivers and their associated transcriptional networks that regulate depression susceptibility and confirmed their functional significance at the levels of gene transcription, synaptic regulation, and behavior. Our study reveals novel transcriptional networks that control stress susceptibility and offers fundamentally new leads for antidepressant drug discovery. Copyright © 2016 Elsevier Inc. All rights reserved.

Novel transcriptional networks regulated by CLOCK in human neurons.

Science.gov (United States)

Fontenot, Miles R; Berto, Stefano; Liu, Yuxiang; Werthmann, Gordon; Douglas, Connor; Usui, Noriyoshi; Gleason, Kelly; Tamminga, Carol A; Takahashi, Joseph S; Konopka, Genevieve

2017-11-01

The molecular mechanisms underlying human brain evolution are not fully understood; however, previous work suggested that expression of the transcription factor CLOCK in the human cortex might be relevant to human cognition and disease. In this study, we investigated this novel transcriptional role for CLOCK in human neurons by performing chromatin immunoprecipitation sequencing for endogenous CLOCK in adult neocortices and RNA sequencing following CLOCK knockdown in differentiated human neurons in vitro. These data suggested that CLOCK regulates the expression of genes involved in neuronal migration, and a functional assay showed that CLOCK knockdown increased neuronal migratory distance. Furthermore, dysregulation of CLOCK disrupts coexpressed networks of genes implicated in neuropsychiatric disorders, and the expression of these networks is driven by hub genes with human-specific patterns of expression. These data support a role for CLOCK-regulated transcriptional cascades involved in human brain evolution and function. © 2017 Fontenot et al.; Published by Cold Spring Harbor Laboratory Press.

Standardized methods to verify absorbed dose in irradiated food for insect control. Proceedings of a final research co-ordination meeting

International Nuclear Information System (INIS)

2001-03-01

Irradiation to control insect infestation of food is increasingly accepted and applied, especially as a phytosanitary treatment of food as an alternative to fumigation. However, unlike other processes for insect control, irradiation does not always result in immediate insect death. Thus, it is conceivable that fresh and dried fruits and tree nuts, which have been correctly irradiated to meet insect disinfestation/quarantine requirements, may still contain live insects at the time of importation. There is, however, a movement by plant quarantine authorities away from inspecting to ensure the absence of live insects in imported consignments towards examining through administrative procedures that a treatment required by law has been given. Nevertheless, there is a need to provide plant quarantine inspectors with a reliable objective method to verify that a minimum absorbed dose of radiation was given to supplement administrative procedures. Such an objective method is expected to bolster the confidence of the inspectors in clearing the consignment without delay and to facilitate trade in irradiated commodities. The Joint FAO/IAEA Division of Nuclear Techniques in Food and Agriculture initiated a co-ordinated research project (CRP) in 1994 to generate data on the verification of absorbed dose of irradiation in fresh, dried fruits and tree nuts for insect disinfestation/quarantine purposes. A standardized label dose indicator available commercially was used to verify the minimum/maximum absorbed dose of the irradiated commodities for these purposes as required by regulations in certain countries. It appears that such a label dose indicator with certain modifications could be made available to assist national authorities and the food industry to verify the absorbed dose of irradiation to facilitate trade in such irradiated commodities. This TECDOC reports on the accomplishments of this co-ordinated research project and includes the papers presented by the participants

Co-ordinated research project on application of nuclear techniques in the prevention of degenerative diseases (obesity and non-insulin dependent diabetes) in ageing

Energy Technology Data Exchange (ETDEWEB)

NONE

1999-07-01

In the developed countries, research using nuclear methods has been substantially used to examine the physiological and biochemical mechanisms involved in obesity-related diseases. This Co-ordinated Research Project (CRP) is intended to promote the use of these techniques in the developing world. The specific objectives of this CRP are: 1. To define the magnitude of the obesity/NIDDM problem in developing countries. 2. To identify vulnerable groups at high risk. 3. To describe the metabolic mechanisms involved. The purpose of this first Research Co-ordination Meeting (RCM) was thus to develop a worldwide collaboration in the use of nuclear and isotopic techniques to investigate the aetiology of degenerative diseases in ageing. All countries participating in this CRP are going through the epidemiological transition with changes in lifestyles to approach those seen in the developed nations. This first meeting was held in the Agency's headquarters in Vienna, with participation of contract and agreement holders, experts, observer, and in-house staff.

Co-ordinated research programme on the use of nuclear and nuclear-related techniques in the study of environmental pollution associated with solid wastes

International Nuclear Information System (INIS)

1988-01-01

A co-ordinated research programme on the use of nuclear and nuclear-related techniques in the study of environmental pollution associated with solid wastes was started by the Agency in December 1987 and now comprises nineteen participants from seventeen countries. Topics of interest in this programme include studies of atmospheric aerosols, coal fly ash, incinerator ash, sewage sludge and a variety of other environmental specimens contaminated with solid wastes. The analytical techniques being used in this programme include neutron activation analysis (NAA), particle induced X-ray emission (PIXE) and energy-dispersive X-ray fluorescence (ED-XRF). This report summarizes the discussions that took place during the first research co-ordination meeting. Working papers presented by the participants are included as annexes. The main outcome of the meeting was agreement to include a ''core'' programme comprising studies of (1) aerosols collected from areas of low and high pollution, (2) coal fly ash composition, and (3) leaching of toxic elements from coal fly ash

Co-ordinated research project on application of nuclear techniques in the prevention of degenerative diseases (obesity and non-insulin dependent diabetes) in ageing

International Nuclear Information System (INIS)

1999-01-01

In the developed countries, research using nuclear methods has been substantially used to examine the physiological and biochemical mechanisms involved in obesity-related diseases. This Co-ordinated Research Project (CRP) is intended to promote the use of these techniques in the developing world. The specific objectives of this CRP are: 1. To define the magnitude of the obesity/NIDDM problem in developing countries. 2. To identify vulnerable groups at high risk. 3. To describe the metabolic mechanisms involved. The purpose of this first Research Co-ordination Meeting (RCM) was thus to develop a worldwide collaboration in the use of nuclear and isotopic techniques to investigate the aetiology of degenerative diseases in ageing. All countries participating in this CRP are going through the epidemiological transition with changes in lifestyles to approach those seen in the developed nations. This first meeting was held in the Agency's headquarters in Vienna, with participation of contract and agreement holders, experts, observer, and in-house staff

Role of ALKBH1 in the Core Transcriptional Network of Embryonic Stem Cells

Directory of Open Access Journals (Sweden)

Rune Ougland

2016-01-01

Full Text Available Background/Aims: ALKBH1, an AlkB homologue in the 2-oxoglutarate and Fe2+ dependent hydroxylase family, is a histone dioxygenase that removes methyl groups from histone H2A. Studies of transgenic mice lacking Alkbh1 reveal that most Alkbh1-/- embryos die during embryonic development. Embryonic stem cells (ESCs derived from these mice have prolonged expression of pluripotency markers and delayed induction of genes involved in neural differentiation, indicating that ALKBH1 is involved in regulation of pluripotency and differentiation. The aim of this study was to further investigate the role ALKBH1 in early development. Methods: Double-filter methods for nitrocellulose-filter binding, dot blot, enzyme-linked immunosorbent assay (ELISA, immonocytochemistry, cell culture and differentiation of mouse ESCs, Co-IP and miRNA analysis. Results: We found that SOX2 and NANOG bind the ALKBH1 promoter, and we identified protein-protein interactions between ALKBH1 and these core transcription factors of the pluripotency network. Furthermore, lack of ALKBH1 affected the expression of developmentally important miRNAs, which are involved in the regulation of NANOG, SOX2 and neural differentiation. Conclusion: Our results suggest that ALKBH1 interacts with the core transcriptional pluripotency network of ESCs and is involved in regulation of pluripotency and differentiation.

Transcriptional networks in epithelial-mesenchymal transition.

Directory of Open Access Journals (Sweden)

Christo Venkov

Full Text Available Epithelial-mesenchymal transition (EMT changes polarized epithelial cells into migratory phenotypes associated with loss of cell-cell adhesion molecules and cytoskeletal rearrangements. This form of plasticity is seen in mesodermal development, fibroblast formation, and cancer metastasis.Here we identify prominent transcriptional networks active during three time points of this transitional process, as epithelial cells become fibroblasts. DNA microarray in cultured epithelia undergoing EMT, validated in vivo, were used to detect various patterns of gene expression. In particular, the promoter sequences of differentially expressed genes and their transcription factors were analyzed to identify potential binding sites and partners. The four most frequent cis-regulatory elements (CREs in up-regulated genes were SRY, FTS-1, Evi-1, and GC-Box, and RNA inhibition of the four transcription factors, Atf2, Klf10, Sox11, and SP1, most frequently binding these CREs, establish their importance in the initiation and propagation of EMT. Oligonucleotides that block the most frequent CREs restrain EMT at early and intermediate stages through apoptosis of the cells.Our results identify new transcriptional interactions with high frequency CREs that modulate the stability of cellular plasticity, and may serve as targets for modulating these transitional states in fibroblasts.

Facilitating value co-creation in networks

DEFF Research Database (Denmark)

Rasmussen, Mette Apollo

participants in varied ways come to grasp the meaning of networking. The dissertation draws on insights from the Service-Dominant (S-D) Logic to explain how networks can be seen as spheres for value co-creation. Co-creation as a theoretical construct has evolved from varied streams of service marketing...... of networking. The concept of “imaginative value” (Beckert, 2011) is used to explain the oscillating behaviors observed in the two networks. Imaginative value can be defined as symbolic value that actors ascribe to an object, in this case the network. I argue that the group practices in the networks led......The dissertation investigates through two ethnographic case studies how value co-creation takes place in inter-organizational networks that have been facilitated by a municipality. The contribution of the study to business network research is the emphasis on development phases of networks...

Report on the first research co-ordination meeting of the co-ordinated research project: 'The development of strategies for the effective monitoring of veterinary drug residues in livestock and livestock products in developing countries' (D3.20.22)

International Nuclear Information System (INIS)

2002-01-01

The first Research Co-ordination Meeting (RCM) of the Co-ordinated Research Project (CRP) on 'the development of strategies for the effective monitoring of veterinary drug residues in livestock and livestock products in developing countries' was held in the Vienna International Centre from 2 to 6 September 2002. Twelve Research Contracts (RCs) and 3 Research Agreements (RAs) have been awarded under this CRP and all awardees, the Project Officer and a guest speaker from the Austrian Agency for Health and Food Safety (AAHFS) participated in the RCM. The objective of the RCM was to plan the first phase of the CRP, initiation of the development and validation of methods. Specific objectives were to: Agree upon a small number of veterinary drugs upon which to focus the research; Agree upon analytical methodologies to be employed; formulate individual work plans for each research contract holder within the framework of the overall work plan. Each RC holder presented an overview of residues monitoring from the perspective of their respective countries. Emphasis was placed on problems encountered and future requirements. The participants visited the Austrian National Reference Laboratory for veterinary drug residues at Moedling and discussed the activities there with Mr. Kuhn and laboratory staff. An overall framework for phase of the CRP, focusing upon the compounds and analytical techniques of major importance to the majority of participants, was formulated. Each RC holder discussed and revised their individual work plan with the RA holders and the PO. The overall framework was then reviewed and a summary of the individual work plans presented. Conclusions and recommendations were drafted

Transcriptional regulation of the carbohydrate utilization network in Thermotoga maritima

Directory of Open Access Journals (Sweden)

Dmitry A Rodionov

2013-08-01

Full Text Available Hyperthermophilic bacteria from the Thermotogales lineage can produce hydrogen by fermenting a wide range of carbohydrates. Previous experimental studies identified a large fraction of genes committed to carbohydrate degradation and utilization in the model bacterium Thermotoga maritima. Knowledge of these genes enabled comprehensive reconstruction of biochemical pathways comprising the carbohydrate utilization network. However, transcriptional factors (TFs and regulatory mechanisms driving this network remained largely unknown. Here, we used an integrated approach based on comparative analysis of genomic and transcriptomic data for the reconstruction of the carbohydrate utilization regulatory networks in 11 Thermotogales genomes. We identified DNA-binding motifs and regulons for 19 orthologous TFs in the Thermotogales. The inferred regulatory network in T. maritima contains 181 genes encoding TFs, sugar catabolic enzymes and ABC-family transporters. In contrast to many previously described bacteria, a transcriptional regulation strategy of Thermotoga does not employ global regulatory factors. The reconstructed regulatory network in T. maritima was validated by gene expression profiling on a panel of mono- and disaccharides and by in vitro DNA-binding assays. The observed upregulation of genes involved in catabolism of pectin, trehalose, cellobiose, arabinose, rhamnose, xylose, glucose, galactose, and ribose showed a strong correlation with the UxaR, TreR, BglR, CelR, AraR, RhaR, XylR, GluR, GalR, and RbsR regulons. Ultimately, this study elucidated the transcriptional regulatory network and mechanisms controlling expression of carbohydrate utilization genes in T. maritima. In addition to improving the functional annotations of associated transporters and catabolic enzymes, this research provides novel insights into the evolution of regulatory networks in Thermotogales.

Ideology Influencing Action: Special Educational Needs Co-Ordinator and Learning Support Assistant Role Conceptualisations and Experiences of Special Needs Education in England

Science.gov (United States)

Maher, Anthony John; Vickerman, Philip

2018-01-01

One outcome of England's Code of Practice' (DfE, 1994) was an increase, first, in the number of learning support assistants (LSAs) working in mainstream schools and, second, the establishment of the role of special educational needs co-ordinator (SENCO). Semi-structured interviews were conducted with SENCOs and LSAs to explore: (i) why they chose…

CoryneRegNet: an ontology-based data warehouse of corynebacterial transcription factors and regulatory networks.

Science.gov (United States)

Baumbach, Jan; Brinkrolf, Karina; Czaja, Lisa F; Rahmann, Sven; Tauch, Andreas

2006-02-14

The application of DNA microarray technology in post-genomic analysis of bacterial genome sequences has allowed the generation of huge amounts of data related to regulatory networks. This data along with literature-derived knowledge on regulation of gene expression has opened the way for genome-wide reconstruction of transcriptional regulatory networks. These large-scale reconstructions can be converted into in silico models of bacterial cells that allow a systematic analysis of network behavior in response to changing environmental conditions. CoryneRegNet was designed to facilitate the genome-wide reconstruction of transcriptional regulatory networks of corynebacteria relevant in biotechnology and human medicine. During the import and integration process of data derived from experimental studies or literature knowledge CoryneRegNet generates links to genome annotations, to identified transcription factors and to the corresponding cis-regulatory elements. CoryneRegNet is based on a multi-layered, hierarchical and modular concept of transcriptional regulation and was implemented by using the relational database management system MySQL and an ontology-based data structure. Reconstructed regulatory networks can be visualized by using the yFiles JAVA graph library. As an application example of CoryneRegNet, we have reconstructed the global transcriptional regulation of a cellular module involved in SOS and stress response of corynebacteria. CoryneRegNet is an ontology-based data warehouse that allows a pertinent data management of regulatory interactions along with the genome-scale reconstruction of transcriptional regulatory networks. These models can further be combined with metabolic networks to build integrated models of cellular function including both metabolism and its transcriptional regulation.

Information processing in the transcriptional regulatory network of yeast: Functional robustness

Directory of Open Access Journals (Sweden)

Dehmer Matthias

2009-03-01

Full Text Available Abstract Background Gene networks are considered to represent various aspects of molecular biological systems meaningfully because they naturally provide a systems perspective of molecular interactions. In this respect, the functional understanding of the transcriptional regulatory network is considered as key to elucidate the functional organization of an organism. Results In this paper we study the functional robustness of the transcriptional regulatory network of S. cerevisiae. We model the information processing in the network as a first order Markov chain and study the influence of single gene perturbations on the global, asymptotic communication among genes. Modification in the communication is measured by an information theoretic measure allowing to predict genes that are 'fragile' with respect to single gene knockouts. Our results demonstrate that the predicted set of fragile genes contains a statistically significant enrichment of so called essential genes that are experimentally found to be necessary to ensure vital yeast. Further, a structural analysis of the transcriptional regulatory network reveals that there are significant differences between fragile genes, hub genes and genes with a high betweenness centrality value. Conclusion Our study does not only demonstrate that a combination of graph theoretical, information theoretical and statistical methods leads to meaningful biological results but also that such methods allow to study information processing in gene networks instead of just their structural properties.

Coevolution within a transcriptional network by compensatory trans and cis mutations

KAUST Repository

Kuo, D.

2010-10-26

Transcriptional networks have been shown to evolve very rapidly, prompting questions as to how such changes arise and are tolerated. Recent comparisons of transcriptional networks across species have implicated variations in the cis-acting DNA sequences near genes as the main cause of divergence. What is less clear is how these changes interact with trans-acting changes occurring elsewhere in the genetic circuit. Here, we report the discovery of a system of compensatory trans and cis mutations in the yeast AP-1 transcriptional network that allows for conserved transcriptional regulation despite continued genetic change. We pinpoint a single species, the fungal pathogen Candida glabrata, in which a trans mutation has occurred very recently in a single AP-1 family member, distinguishing it from its Saccharomyces ortholog. Comparison of chromatin immunoprecipitation profiles between Candida and Saccharomyces shows that, despite their different DNA-binding domains, the AP-1 orthologs regulate a conserved block of genes. This conservation is enabled by concomitant changes in the cis-regulatory motifs upstream of each gene. Thus, both trans and cis mutations have perturbed the yeast AP-1 regulatory system in such a way as to compensate for one another. This demonstrates an example of “coevolution” between a DNA-binding transcription factor and its cis-regulatory site, reminiscent of the coevolution of protein binding partners.

Inferring the role of transcription factors in regulatory networks

Directory of Open Access Journals (Sweden)

Le Borgne Michel

2008-05-01

Full Text Available Abstract Background Expression profiles obtained from multiple perturbation experiments are increasingly used to reconstruct transcriptional regulatory networks, from well studied, simple organisms up to higher eukaryotes. Admittedly, a key ingredient in developing a reconstruction method is its ability to integrate heterogeneous sources of information, as well as to comply with practical observability issues: measurements can be scarce or noisy. In this work, we show how to combine a network of genetic regulations with a set of expression profiles, in order to infer the functional effect of the regulations, as inducer or repressor. Our approach is based on a consistency rule between a network and the signs of variation given by expression arrays. Results We evaluate our approach in several settings of increasing complexity. First, we generate artificial expression data on a transcriptional network of E. coli extracted from the literature (1529 nodes and 3802 edges, and we estimate that 30% of the regulations can be annotated with about 30 profiles. We additionally prove that at most 40.8% of the network can be inferred using our approach. Second, we use this network in order to validate the predictions obtained with a compendium of real expression profiles. We describe a filtering algorithm that generates particularly reliable predictions. Finally, we apply our inference approach to S. cerevisiae transcriptional network (2419 nodes and 4344 interactions, by combining ChIP-chip data and 15 expression profiles. We are able to detect and isolate inconsistencies between the expression profiles and a significant portion of the model (15% of all the interactions. In addition, we report predictions for 14.5% of all interactions. Conclusion Our approach does not require accurate expression levels nor times series. Nevertheless, we show on both data, real and artificial, that a relatively small number of perturbation experiments are enough to determine

Supra-optimal expression of the cold-regulated OsMyb4 transcription factor in transgenic rice changes the complexity of transcriptional network with major effects on stress tolerance and panicle development

KAUST Repository

Park, Myoungryoul

2010-09-28

The R2R3-type OsMyb4 transcription factor of rice has been shown to play a role in the regulation of osmotic adjustment in heterologous overexpression studies. However, the exact composition and organization of its underlying transcriptional network has not been established to be a robust tool for stress tolerance enhancement by regulon engineering. OsMyb4 network was dissected based on commonalities between the global chilling stress transcriptome and the transcriptome configured by OsMyb4 overexpression. OsMyb4 controls a hierarchical network comprised of several regulatory sub-clusters associated with cellular defense and rescue, metabolism and development. It regulates target genes either directly or indirectly through intermediary MYB, ERF, bZIP, NAC, ARF and CCAAT-HAP transcription factors. Regulatory sub-clusters have different combinations of MYB-like, GCC-box-like, ERD1-box-like, ABRE-like, G-box-like, as1/ocs/TGA-like, AuxRE-like, gibberellic acid response element (GARE)-like and JAre-like cis-elements. Cold-dependent network activity enhanced cellular antioxidant capacity through radical scavenging mechanisms and increased activities of phenylpropanoid and isoprenoid metabolic processes involving various abscisic acid (ABA), jasmonic acid (JA), salicylic acid (SA), ethylene and reactive oxygen species (ROS) responsive genes. OsMyb4 network is independent of drought response element binding protein/C-repeat binding factor (DREB/CBF) and its sub-regulons operate with possible co-regulators including nuclear factor-Y. Because of its upstream position in the network hierarchy, OsMyb4 functions quantitatively and pleiotrophically. Supra-optimal expression causes misexpression of alternative targets with costly trade-offs to panicle development. © 2010 Blackwell Publishing Ltd.

Supra-optimal expression of the cold-regulated OsMyb4 transcription factor in transgenic rice changes the complexity of transcriptional network with major effects on stress tolerance and panicle development.

Science.gov (United States)

Park, Myoung-Ryoul; Yun, Kil-Young; Mohanty, Bijayalaxmi; Herath, Venura; Xu, Fuyu; Wijaya, Edward; Bajic, Vladimir B; Yun, Song-Joong; De Los Reyes, Benildo G

2010-12-01

The R2R3-type OsMyb4 transcription factor of rice has been shown to play a role in the regulation of osmotic adjustment in heterologous overexpression studies. However, the exact composition and organization of its underlying transcriptional network has not been established to be a robust tool for stress tolerance enhancement by regulon engineering. OsMyb4 network was dissected based on commonalities between the global chilling stress transcriptome and the transcriptome configured by OsMyb4 overexpression. OsMyb4 controls a hierarchical network comprised of several regulatory sub-clusters associated with cellular defense and rescue, metabolism and development. It regulates target genes either directly or indirectly through intermediary MYB, ERF, bZIP, NAC, ARF and CCAAT-HAP transcription factors. Regulatory sub-clusters have different combinations of MYB-like, GCC-box-like, ERD1-box-like, ABRE-like, G-box-like, as1/ocs/TGA-like, AuxRE-like, gibberellic acid response element (GARE)-like and JAre-like cis-elements. Cold-dependent network activity enhanced cellular antioxidant capacity through radical scavenging mechanisms and increased activities of phenylpropanoid and isoprenoid metabolic processes involving various abscisic acid (ABA), jasmonic acid (JA), salicylic acid (SA), ethylene and reactive oxygen species (ROS) responsive genes. OsMyb4 network is independent of drought response element binding protein/C-repeat binding factor (DREB/CBF) and its sub-regulons operate with possible co-regulators including nuclear factor-Y. Because of its upstream position in the network hierarchy, OsMyb4 functions quantitatively and pleiotrophically. Supra-optimal expression causes misexpression of alternative targets with costly trade-offs to panicle development. © 2010 Blackwell Publishing Ltd.

Co-ordinated research project: comparative international studies of osteoporosis using isotope techniques

Energy Technology Data Exchange (ETDEWEB)

NONE

1999-12-31

Poor bone health is a major public health problem of worldwide concern. No country is immune. One of the main concerns - osteoporosis - is a bone disease that usually affects older people (primarily post-menopausal women), leading to hip fractures, vertebral compression fractures, and other related problems.In 1994 the IAEA (henceforth the `Agency`) started a 5-year Co-ordinated Research Programme (CRP) which addresses one particular measure of bone health - bone mineral density (BMD). The main concept underpinning this CRP is that good bone health in later years is primarily determined by the attainment of a sufficiently high BMD during early adulthood. The `core` objective of the Agency`s CRP is to investigate how BMD varies with the age, sex, ethnicity and geographical origin of the subjects over the age range from 15 to 50 years. This is being done in the hopeful expectation that, by looking at a large number of population groups with different lifestyle, nutritional and other parameters, it might be possible to obtain some new insights into which factors are important for attaining a high value of BMD during early adulthood, and for being able to maintain it at a sufficiently high level into old age. The Second Research Co-ordination Meeting (RCM) for participants in the CRP - which is the subject of the present report - was held at the University of California San Diego (UCSD), USA. An overview of the data on BMD reported by the participants during the meeting. It is concluded that the CRP participants have gathered an impressive amount of data over the last 2 years. Given the fact that some age groups contain relatively small numbers of subjects, the statistical uncertainties are still relatively large. Nevertheless, there do appear to be quite marked differences in BMD across the centres, approaching approximately 10%. If confirmed, this could represent a major difference in fracture risk for the future, if all other factors (bone quality, weight, fall

Co-ordinated research project: comparative international studies of osteoporosis using isotope techniques

International Nuclear Information System (INIS)

1998-01-01

Poor bone health is a major public health problem of worldwide concern. No country is immune. One of the main concerns - osteoporosis - is a bone disease that usually affects older people (primarily post-menopausal women), leading to hip fractures, vertebral compression fractures, and other related problems.In 1994 the IAEA (henceforth the 'Agency') started a 5-year Co-ordinated Research Programme (CRP) which addresses one particular measure of bone health - bone mineral density (BMD). The main concept underpinning this CRP is that good bone health in later years is primarily determined by the attainment of a sufficiently high BMD during early adulthood. The 'core' objective of the Agency's CRP is to investigate how BMD varies with the age, sex, ethnicity and geographical origin of the subjects over the age range from 15 to 50 years. This is being done in the hopeful expectation that, by looking at a large number of population groups with different lifestyle, nutritional and other parameters, it might be possible to obtain some new insights into which factors are important for attaining a high value of BMD during early adulthood, and for being able to maintain it at a sufficiently high level into old age. The Second Research Co-ordination Meeting (RCM) for participants in the CRP - which is the subject of the present report - was held at the University of California San Diego (UCSD), USA. An overview of the data on BMD reported by the participants during the meeting. It is concluded that the CRP participants have gathered an impressive amount of data over the last 2 years. Given the fact that some age groups contain relatively small numbers of subjects, the statistical uncertainties are still relatively large. Nevertheless, there do appear to be quite marked differences in BMD across the centres, approaching approximately 10%. If confirmed, this could represent a major difference in fracture risk for the future, if all other factors (bone quality, weight, fall

Nuclear Structure and Decay Data (NSDD) network

International Nuclear Information System (INIS)

Pronyaev, V.G.

2001-02-01

This report provides a brief description of the Nuclear Structure and Decay Data (NSDD) Network in response to a request from the Advisory Group Meeting on ''Co-ordination of the International Network of Nuclear Structure and Decay Data Evaluators'' (IAEA, Vienna, 14-17 December 1998, report IAEA(NDS)-399 (1999)). This report supersedes the special issue of the Nuclear Data Newsletter No. 20 published in November 1994. (author)

Safety cases for the co-ordinated research project on improvement of safety assessment methodologies for near surface radioactive waste disposal facilities (ISAM)

International Nuclear Information System (INIS)

Kozak, M.W.; Torres-Vidal, C.; Kelly, E.; Guskov, A.; Blerk, J. van

2002-01-01

A Co-ordinated Research Project (CRP) has recently been completed on the Improvement of Safety Assessment Methodologies for Near-Surface Radioactive Waste Disposal Facilities (ISAM). A major aspect of the project was the use of safety cases for the practical application of safety assessment. An overview of the ISAM safety cases is given in this paper. (author)

Combination processes for food irradiation. Proceedings of the final research co-ordination meeting

International Nuclear Information System (INIS)

1998-01-01

There is an increasing consumer demand for food that is safe, minimally processed, visually attractive, full flavoured, nutritious, and convenient to prepare and serve, that has fewer preservatives, and that is available throughout the year at an affordable cost. Consumer concern and regulatory restrictions on the use of preservatives and pesticides in food are adversely affecting international trade in many food products. As a result, minimally processed, chilled foods and ready to eat foods are increasingly being marketed to satisfy consumer demand in both developed and developing countries. However, such foods could introduce new microbiological risks to the population, especially to those who are immunocompromised or generally at risk (children, pregnant women, the elderly, etc.). In view of these factors, a 5 year Co-ordinated Research Programme (CRP) on Irradiation in Combination with Other Processes for Improving Food Quality was initiated in 1991 by the Food and Agriculture Organization of the United Nations and the International Atomic Energy Agency through their Joint FAO/IAEA Division of Nuclear Techniques in Food and Agriculture. The objectives of this CRP were to evaluate: 1) Combination treatment involving irradiation in order to extend the self-life of meat, seafood, fruits and vegetables at refrigeration temperatures and under ambient conditions; 2) Combination treatment involving irradiation in order to ensure the microbiological safety of foods, both individual and composite, including prepared meals; 3) Shelf-life extension of chilled, prepared meals and the development of shelf stable food and food components through combination treatment involving irradiation; 4) Energy requirements of combination processes involving irradiation in comparison to other food processes. Scientists from 14 countries participated in the CRP by carrying out the work under Research Contracts and Agreements with the Joint FAO/IAEA Division. The first Research Co-ordination

Isolated guitar transcription using a deep belief network

Directory of Open Access Journals (Sweden)

Gregory Burlet

2017-03-01

Full Text Available Music transcription involves the transformation of an audio recording to common music notation, colloquially referred to as sheet music. Manually transcribing audio recordings is a difficult and time-consuming process, even for experienced musicians. In response, several algorithms have been proposed to automatically analyze and transcribe the notes sounding in an audio recording; however, these algorithms are often general-purpose, attempting to process any number of instruments producing any number of notes sounding simultaneously. This paper presents a polyphonic transcription algorithm that is constrained to processing the audio output of a single instrument, specifically an acoustic guitar. The transcription system consists of a novel note pitch estimation algorithm that uses a deep belief network and multi-label learning techniques to generate multiple pitch estimates for each analysis frame of the input audio signal. Using a compiled dataset of synthesized guitar recordings for evaluation, the algorithm described in this work results in an 11% increase in the f-measure of note transcriptions relative to Zhou et al.’s (2009 transcription algorithm in the literature. This paper demonstrates the effectiveness of deep, multi-label learning for the task of polyphonic transcription.

Current and emerging approaches to define intestinal epithelium-specific transcriptional networks

DEFF Research Database (Denmark)

Olsen, Anders Krûger; Boyd, Mette; Danielsen, Erik Thomas

2012-01-01

Upon developmental or environmental cues, the composition of transcription factors in a transcriptional regulatory network is deeply implicated in controlling the signature of the gene expression and thereby specifies the cell- or tissue-type. Novel methods including ChIP-chip and ChIP-Seq have...

Co-expression Network Approach to Studying the Effects of Botulinum Neurotoxin-A.

Science.gov (United States)

Mukund, Kavitha; Ward, Samuel R; Lieber, Richard L; Subramaniam, Shankar

2017-10-16

Botulinum Neurotoxin A (BoNT-A) is a potent neurotoxin with several clinical applications.The goal of this study was to utilize co-expression network theory to analyze temporal transcriptional data from skeletal muscle after BoNT-A treatment. Expression data for 2000 genes (extracted using a ranking heuristic) served as the basis for this analysis. Using weighted gene co-expression network analysis (WGCNA), we identified 19 co-expressed modules, further hierarchically clustered into 5 groups. Quantifying average expression and co-expression patterns across these groups revealed temporal aspects of muscle's response to BoNT-A. Functional analysis revealed enrichment of group 1 with metabolism; group 5 with contradictory functions of atrophy and cellular recovery; and groups 2 and 3 with extracellular matrix (ECM) and non-fast fiber isoforms. Topological positioning of two highly ranked, significantly expressed genes- Dclk1 and Ostalpha within group 5 suggested possible mechanistic roles in recovery from BoNT-A induced atrophy. Phenotypic correlations of groups with titin and myosin protein content further emphasized the effect of BoNT-A on the sarcomeric contraction machinery in early phase of chemodenervation. In summary, our approach revealed a hierarchical functional response to BoNT-A induced paralysis with early metabolic and later ECM responses and identified putative biomarkers associated with chemodenervation. Additionally, our results provide an unbiased validation of the response documented in our previous workBotulinum Neurotoxin A (BoNT-A) is a potent neurotoxin with several clinical applications.The goal of this study was to utilize co-expression network theory to analyze temporal transcriptional data from skeletal muscle after BoNT-A treatment. Expression data for 2000 genes (extracted using a ranking heuristic) served as the basis for this analysis. Using weighted gene co-expression network analysis (WGCNA), we identified 19 co-expressed modules

CoryneRegNet: An ontology-based data warehouse of corynebacterial transcription factors and regulatory networks

Directory of Open Access Journals (Sweden)

Czaja Lisa F

2006-02-01

Full Text Available Abstract Background The application of DNA microarray technology in post-genomic analysis of bacterial genome sequences has allowed the generation of huge amounts of data related to regulatory networks. This data along with literature-derived knowledge on regulation of gene expression has opened the way for genome-wide reconstruction of transcriptional regulatory networks. These large-scale reconstructions can be converted into in silico models of bacterial cells that allow a systematic analysis of network behavior in response to changing environmental conditions. Description CoryneRegNet was designed to facilitate the genome-wide reconstruction of transcriptional regulatory networks of corynebacteria relevant in biotechnology and human medicine. During the import and integration process of data derived from experimental studies or literature knowledge CoryneRegNet generates links to genome annotations, to identified transcription factors and to the corresponding cis-regulatory elements. CoryneRegNet is based on a multi-layered, hierarchical and modular concept of transcriptional regulation and was implemented by using the relational database management system MySQL and an ontology-based data structure. Reconstructed regulatory networks can be visualized by using the yFiles JAVA graph library. As an application example of CoryneRegNet, we have reconstructed the global transcriptional regulation of a cellular module involved in SOS and stress response of corynebacteria. Conclusion CoryneRegNet is an ontology-based data warehouse that allows a pertinent data management of regulatory interactions along with the genome-scale reconstruction of transcriptional regulatory networks. These models can further be combined with metabolic networks to build integrated models of cellular function including both metabolism and its transcriptional regulation.

Co-ordinated Research Projects (CRPs): Annual report of activities and statistics for 2001

Energy Technology Data Exchange (ETDEWEB)

NONE

2002-07-15

Article III of the IAEA Statute authorises the Agency to encourage and assist research on, and development and practical application of, atomic energy for peaceful purposes throughout the world and to foster the exchange of scientific and technical information, as well as the exchange of scientists in the field of peaceful uses of atomic energy. The research supported by the Agency is within the framework of the Agency's programmes, sub-programmes and projects that are listed in the approved Programme and Budget of the Agency. The research work is normally implemented through Coordinated Research Projects (CRPs) that bring together research institutes in both developing and developed Member States to collaborate on the research topic of interest. In addition, the introduction of a new type of CRP (called Thematic CRP), meant to complement traditional CRPs, is currently being tested by the Human Health programme. This new, optional type of CRP is designed to strengthen promotion of research on nuclear technologies in developing Member States through CRPs that rest on pair building between agreement holders and contract holders and includes a PhD training programme at the contract holders' institutions. Further details of the administration of research contracts and general information on CRPs is contained in the Agency?s Website at http://www.iaea.org/programmes/ri/uc.html. The CRPs reported in this document are conducted in support of the following Agency programmes: Nuclear Power; Nuclear Fuel Cycle and Waste Management Technology; Comparative Assessment for Sustainable Energy Development; Food and Agriculture; Human Health; Marine Environment and Water Resources; Applications of Physical and Chemical Sciences; Nuclear Safety; Radiation Safety; Radioactive Waste Safety; Co-ordination of Safety Activities; Safeguards. The Sub-programmes supported by the CRPs are listed. Results of research are available to all Member States, and are disseminated through national

Co-ordinated Research Projects (CRPs): Annual report of activities and statistics for 2001

International Nuclear Information System (INIS)

2002-07-01

Article III of the IAEA Statute authorises the Agency to encourage and assist research on, and development and practical application of, atomic energy for peaceful purposes throughout the world and to foster the exchange of scientific and technical information, as well as the exchange of scientists in the field of peaceful uses of atomic energy. The research supported by the Agency is within the framework of the Agency's programmes, sub-programmes and projects that are listed in the approved Programme and Budget of the Agency. The research work is normally implemented through Coordinated Research Projects (CRPs) that bring together research institutes in both developing and developed Member States to collaborate on the research topic of interest. In addition, the introduction of a new type of CRP (called Thematic CRP), meant to complement traditional CRPs, is currently being tested by the Human Health programme. This new, optional type of CRP is designed to strengthen promotion of research on nuclear technologies in developing Member States through CRPs that rest on pair building between agreement holders and contract holders and includes a PhD training programme at the contract holders' institutions. Further details of the administration of research contracts and general information on CRPs is contained in the Agency?s Website at http://www.iaea.org/programmes/ri/uc.html. The CRPs reported in this document are conducted in support of the following Agency programmes: Nuclear Power; Nuclear Fuel Cycle and Waste Management Technology; Comparative Assessment for Sustainable Energy Development; Food and Agriculture; Human Health; Marine Environment and Water Resources; Applications of Physical and Chemical Sciences; Nuclear Safety; Radiation Safety; Radioactive Waste Safety; Co-ordination of Safety Activities; Safeguards. The Sub-programmes supported by the CRPs are listed. Results of research are available to all Member States, and are disseminated through national

Current and emerging approaches to define intestinal epithelium-specific transcriptional networks

DEFF Research Database (Denmark)

Olsen, Anders Krüger; Boyd, Mette; Danielsen, Erik Thomas

2012-01-01

Upon developmental or environmental cues, the composition of transcription factors in a transcriptional regulatory network is deeply implicated in controlling the signature of the gene expression and thereby specifies the cell or tissue type. Novel methods including ChIP-chip and ChIP-Seq have been...

Report of the research co-ordination meeting on labelling techniques of biomolecules for targeted radiotherapy

International Nuclear Information System (INIS)

2000-01-01

The CRP's focus is on the preparation of site-specific radiopharmaceuticals labelled with β-emitters for the treatment of cancer. The radiopharmaceuticals should be designed in such a way to deliver the therapeutic doses with high specificity to tumour sites and with minimum dose to other organs. The 2. Research Co-ordination Meeting (RCM) took place in Mumbai, India from 31 January to 4 February 2000. The present report includes the results of all the participants including the report of the participant from Pakistan who could not attend the meeting. During the second RCM, three main aspects were dealt with viz. the different therapeutic isotopes studied, different carrier molecules like peptides and antibody and the biological aspects of these preparations

Report of the research co-ordination meeting on labelling techniques of biomolecules for targeted radiotherapy

International Nuclear Information System (INIS)

2000-01-01

The CRP's focus is on the preparation of site-specific radiopharmaceuticals labelled with with β - emitters for the treatment of cancer. The radiopharmaceuticals should be designed in such a way to deliver the therapeutic doses with high specificity to tumour sites and with minimum dose to other organs. The 2nd Research Co-ordination Meeting (RCM) took place in Mumbai, India from 31 January to 4 February 2000. The present report includes the results of all the participants including the report of the participant from Pakistan who could not attend the meeting. During the second RCM, three main aspects were dealt with viz. the different therapeutic isotopes studied, different carrier molecules like peptides and antibody and the biological aspects of these preparations

Report of the research co-ordination meeting on labelling techniques of biomolecules for targeted radiotherapy

Energy Technology Data Exchange (ETDEWEB)

NONE

2000-07-01

The CRP's focus is on the preparation of site-specific radiopharmaceuticals labelled with {beta}-emitters for the treatment of cancer. The radiopharmaceuticals should be designed in such a way to deliver the therapeutic doses with high specificity to tumour sites and with minimum dose to other organs. The 2. Research Co-ordination Meeting (RCM) took place in Mumbai, India from 31 January to 4 February 2000. The present report includes the results of all the participants including the report of the participant from Pakistan who could not attend the meeting. During the second RCM, three main aspects were dealt with viz. the different therapeutic isotopes studied, different carrier molecules like peptides and antibody and the biological aspects of these preparations.

Second Ordinance amending the Radiation Protection Ordinance

International Nuclear Information System (INIS)

1989-01-01

The amendment of the Radiation Protection Ordinance brings about the following changes: (1) Introduction of the concept of effective dose, reduction of limits for partial body dose, adoption of the radiotoxicity values of radionuclides as established by the EC Basis Standards; (2) introduction of a working-life-related dose limit of 400 mSv; (3) supplementing provisions for the protection of the population, particularly by the standard procedure for radioecological impact assessment and determination of dose factors; (4) supplementing provisions on the use of radioactive substances in medicine and medical research; (5) supplementing provisions on health physics monitoring; (6) provisions for improving the supervision and controls in the transport of radioactive substances; (7) definition of activities and their assignment to the provisions of the Radiation Protection Ordinance; (8) revision of the waste management provisions of the Radiation Protection Ordinance. (HP) [de

Outline of the 1996-1998 IAEA co-ordinated research project on intercomparison for individual monitoring of external exposure from photon radiation

International Nuclear Information System (INIS)

Boehm, J.; Gustafsson, M.; Ouvrard, R.

1999-01-01

The outline of the IAEA Co-ordinated Research Project 1996-1998 on intercomparison for individual monitoring is described. The intercomparison focused on IAEA Member States in Eastern Europe and was based on the operational quantity personal dose equivalent, H p (10). The three phases of the intercomparison were: the preparatory phase including a workshop, the 'type-test' intercomparison, and the 'simulated workplace field' intercomparison. Details of the phases are given. (author)

Multiscale Embedded Gene Co-expression Network Analysis.

Directory of Open Access Journals (Sweden)

Won-Min Song

2015-11-01

Full Text Available Gene co-expression network analysis has been shown effective in identifying functional co-expressed gene modules associated with complex human diseases. However, existing techniques to construct co-expression networks require some critical prior information such as predefined number of clusters, numerical thresholds for defining co-expression/interaction, or do not naturally reproduce the hallmarks of complex systems such as the scale-free degree distribution of small-worldness. Previously, a graph filtering technique called Planar Maximally Filtered Graph (PMFG has been applied to many real-world data sets such as financial stock prices and gene expression to extract meaningful and relevant interactions. However, PMFG is not suitable for large-scale genomic data due to several drawbacks, such as the high computation complexity O(|V|3, the presence of false-positives due to the maximal planarity constraint, and the inadequacy of the clustering framework. Here, we developed a new co-expression network analysis framework called Multiscale Embedded Gene Co-expression Network Analysis (MEGENA by: i introducing quality control of co-expression similarities, ii parallelizing embedded network construction, and iii developing a novel clustering technique to identify multi-scale clustering structures in Planar Filtered Networks (PFNs. We applied MEGENA to a series of simulated data and the gene expression data in breast carcinoma and lung adenocarcinoma from The Cancer Genome Atlas (TCGA. MEGENA showed improved performance over well-established clustering methods and co-expression network construction approaches. MEGENA revealed not only meaningful multi-scale organizations of co-expressed gene clusters but also novel targets in breast carcinoma and lung adenocarcinoma.

Multiscale Embedded Gene Co-expression Network Analysis.

Science.gov (United States)

Song, Won-Min; Zhang, Bin

2015-11-01

Gene co-expression network analysis has been shown effective in identifying functional co-expressed gene modules associated with complex human diseases. However, existing techniques to construct co-expression networks require some critical prior information such as predefined number of clusters, numerical thresholds for defining co-expression/interaction, or do not naturally reproduce the hallmarks of complex systems such as the scale-free degree distribution of small-worldness. Previously, a graph filtering technique called Planar Maximally Filtered Graph (PMFG) has been applied to many real-world data sets such as financial stock prices and gene expression to extract meaningful and relevant interactions. However, PMFG is not suitable for large-scale genomic data due to several drawbacks, such as the high computation complexity O(|V|3), the presence of false-positives due to the maximal planarity constraint, and the inadequacy of the clustering framework. Here, we developed a new co-expression network analysis framework called Multiscale Embedded Gene Co-expression Network Analysis (MEGENA) by: i) introducing quality control of co-expression similarities, ii) parallelizing embedded network construction, and iii) developing a novel clustering technique to identify multi-scale clustering structures in Planar Filtered Networks (PFNs). We applied MEGENA to a series of simulated data and the gene expression data in breast carcinoma and lung adenocarcinoma from The Cancer Genome Atlas (TCGA). MEGENA showed improved performance over well-established clustering methods and co-expression network construction approaches. MEGENA revealed not only meaningful multi-scale organizations of co-expressed gene clusters but also novel targets in breast carcinoma and lung adenocarcinoma.

Comparative genomic reconstruction of transcriptional networks controlling central metabolism in the Shewanella genus

Directory of Open Access Journals (Sweden)

Kovaleva Galina

2011-06-01

Full Text Available Abstract Background Genome-scale prediction of gene regulation and reconstruction of transcriptional regulatory networks in bacteria is one of the critical tasks of modern genomics. The Shewanella genus is comprised of metabolically versatile gamma-proteobacteria, whose lifestyles and natural environments are substantially different from Escherichia coli and other model bacterial species. The comparative genomics approaches and computational identification of regulatory sites are useful for the in silico reconstruction of transcriptional regulatory networks in bacteria. Results To explore conservation and variations in the Shewanella transcriptional networks we analyzed the repertoire of transcription factors and performed genomics-based reconstruction and comparative analysis of regulons in 16 Shewanella genomes. The inferred regulatory network includes 82 transcription factors and their DNA binding sites, 8 riboswitches and 6 translational attenuators. Forty five regulons were newly inferred from the genome context analysis, whereas others were propagated from previously characterized regulons in the Enterobacteria and Pseudomonas spp.. Multiple variations in regulatory strategies between the Shewanella spp. and E. coli include regulon contraction and expansion (as in the case of PdhR, HexR, FadR, numerous cases of recruiting non-orthologous regulators to control equivalent pathways (e.g. PsrA for fatty acid degradation and, conversely, orthologous regulators to control distinct pathways (e.g. TyrR, ArgR, Crp. Conclusions We tentatively defined the first reference collection of ~100 transcriptional regulons in 16 Shewanella genomes. The resulting regulatory network contains ~600 regulated genes per genome that are mostly involved in metabolism of carbohydrates, amino acids, fatty acids, vitamins, metals, and stress responses. Several reconstructed regulons including NagR for N-acetylglucosamine catabolism were experimentally validated in S

An international co-ordinated research programme on nuclear accident dosimetry

International Nuclear Information System (INIS)

Flakus, F.N.

1977-01-01

Where fissile materials are being processed in quantities exceeding the minimum critical amounts, a radiation risk to workers arises from the possibility of criticality excursions. Despite the fact that techniques for preventing the occurende of such accidental excursions have reached very high standards it is generally agreed that the availability of suitable nuclear accident dosimetry (NAD) systems is very important. Following the recommendations of an Advisory Group meeting on NAD, the IAEA had established in 1969 an international coordinated research programme on NAD systems and elaborating standarized systems. A large number of research groups from 14 Member States throughout the world participated in this co-ordinated work. Since 1970 four international multilaboratory intercomparison experiments on NAD have been organized and the response of a variety of dosimeters examined in different neutron spectra under simulated accident conditions at Valduc (France), Oak Ridge (USA), Vinca (Yugoslavia) and Harwell (UK). The results achieved in these intercomparison studies show that NAD systems have been substantially improved and that several systems are available now in a number of laboratories throughout the world that perform within the criteria laid down by the initiating advisory group in 1969. A compendium of neutron leakage spectra has also been elaborated for facilitating the determination of dose from readings of detectors exposed to various neutron fields in criticality accidents

X-ray Ordinance

International Nuclear Information System (INIS)

Kramer, R.; Zerlett, G.

1983-01-01

This commentary, presented as volume 2 of the Deutsches Strahlenschutzrecht (German legislation on radiation protection) deals with the legal provisions of the ordinance on the protection against harmful effects of X-radiation (X-ray Ordinance - RoeV), of March 1, 1973 (announced in BGBl.I, page 173), as amended by the ordinance on the protection against harmful effects of ionizing radiation, of October 13, 1976 (announced in BGBl. I, page 2905). Thus volume 2 completes the task started with volume 1, namely to present a comprehensive view and account of the body of laws governing radiation protection, a task which was thought useful as developments in the FRG led to regulations being split up into the X-ray Ordinance, and the Radiation Protection Ordinance. In order to present a well-balanced commentary on the X-ray Ordinance, it was necessary to discuss the provisions both from the legal and the medical point of view. This edition takes into account the Fourth Public Notice of the BMA (Fed. Min. of Labour and Social Affairs) concerning the implementation of the X-ray Ordinance of January 4, 1982, as well as court decisions and literature published in this field, until September 1982. In addition, the judgment of the Federal Constitutional Court, dated October 19, 1982, concerning the voidness of the law on government liability, and two decisions by the Federal High Court, dated November 23, 1982, concerning the right to have insight into medical reports - of great significance in practice - have been considered. This commentary therefore is up to date with current developments. (orig.) [de

Tuning facial-meridional isomerisation in monometallic nine-co-ordinate lanthanide complexes with unsymmetrical tridentate ligands.

Science.gov (United States)

Le Borgne, Thierry; Altmann, Peter; André, Nicolas; Bünzli, Jean-Claude G; Bernardinelli, Gérald; Morgantini, Pierre-Yves; Weber, Jacques; Piguet, Claude

2004-03-07

The unsymmetrical tridentate benzimidazole-pyridine-carboxamide units in ligands L1-L4 react with trivalent lanthanides, Ln(III), to give the nine-co-ordinate triple-helical complexes [Ln(Li)3]3+ (i = 1-4) existing as mixtures of C3-symmetrical facial and C1-symmetrical meridional isomers. Although the beta13 formation constants are 3-4 orders of magnitude smaller for these complexes than those found for the D3-symmetrical analogues [Ln(Li)3]3+ (i = 5-6) with symmetrical ligands, their formation at the millimolar scale is quantitative and the emission quantum yield of [Eu(L2)3]3+ is significantly larger. The fac-[Ln(Li)3]3+ mer-[Ln(Li)3]3+ (i = 1-4) isomerisation process in acetonitrile is slow enough for Ln = Lu(III) to be quantified by 1H NMR below room temperature. The separation of enthalpic and entropic contributions shows that the distribution of the facial and meridional isomers can be tuned by the judicious peripheral substitution of the ligands affecting the interstrand interactions. Molecular mechanics (MM) calculations suggest that one supplementary interstrand pi-stacking interaction stabilises the meridional isomers, while the facial isomers benefit from more favourable electrostatic contributions. As a result of the mixture of facial and meridional isomers in solution, we were unable to obtain single crystals of 1:3 complexes, but the X-ray crystal structures of their nine-co-ordinate precursors [Eu(L1)2(CF3SO3)2(H2O)](CF3SO3)(C3H5N)2(H2O) (6, C45H54EuF9N10O13S3, monoclinic, P2(1)/c, Z = 4) and [Eu(L4)2(CF3SO3)2(H2O)](CF3SO3)(C4H4O)(1.5) (7, C51H66EuF9N8O(15.5)S3, triclinic, P1, Z = 2) provide crucial structural information on the binding mode of the unsymmetrical tridentate ligands.

Combined methods for liquid radioactive waste treatment. Final report of a co-ordinated research project 1997-2001

Energy Technology Data Exchange (ETDEWEB)

NONE

2003-02-01

The report contains 13 papers presented at the final research co-ordination meeting of the CRP. The subjects covered include processes and technologies for treatment and conditioning of liquid radioactive wastes. It quite often includes the application of several steps, such as filtration, precipitation, sorption, ion exchange, evaporation and/or membrane separation to meet the requirements both for the release of decontaminated effluents into the environment and the conditioning of waste concentrates for disposal. Combination of the processes and their consecutive or simultaneous application is also described. It results in an improved decontamination, waste volume reduction, safety and overall cost effectiveness in the treatment, conditioning and disposal of these wastes.

Combined methods for liquid radioactive waste treatment. Final report of a co-ordinated research project 1997-2001

International Nuclear Information System (INIS)

2003-02-01

The report contains 13 papers presented at the final research co-ordination meeting of the CRP. The subjects covered include processes and technologies for treatment and conditioning of liquid radioactive wastes. It quite often includes the application of several steps, such as filtration, precipitation, sorption, ion exchange, evaporation and/or membrane separation to meet the requirements both for the release of decontaminated effluents into the environment and the conditioning of waste concentrates for disposal. Combination of the processes and their consecutive or simultaneous application is also described. It results in an improved decontamination, waste volume reduction, safety and overall cost effectiveness in the treatment, conditioning and disposal of these wastes

Importance of intersectoral co-ordination in the control of communicable diseases, with special reference to plague in Tanzania.

Science.gov (United States)

Kilonzo, B S

1994-07-01

Human health, agriculture, including livestock, energy, education, wildlife, construction, forestry and trade sectors are inter-related and their co-ordination is an important pre-requisite for successful control of most communicable diseases including plague. Similar linkage between research, policy, training and extension activities in each sector are essential for any successful control strategy. Inadequate agricultural produce, inaccessibility of people to the available food and ignorance on proper preparation and usage of available food materials are responsible for malnutrition, and malnourished people are very vulnerable to disease. Irrigation schemes facilitate breeding of various disease vectors and transmission of some communicable diseases. Forests are ecologically favourable for some disease vectors and reservoirs for tsetse flies and rodents, while deforestation leads to soil erosion, lack of rainfall and consequently reduced productivity in agriculture which may result in poor nutrition of the population. Wildlife and livestock serve as reservoirs and/or carriers of various zoonoses including plague, trypanosomiasis and rabies. Lack of proper co-ordination of these sectors in communicable disease control programmes can result in serious and undesirable consequences. Indiscriminate killing of rodents in order to minimize food damage by these vermin forces their flea ectoparasites to seek alternative hosts, including man, a development which may result in transmission of plague from rodents to man. Similarly, avoidance of proper quarantine during plague epidemics, an undertaking which is usually aimed at maintaining economic and social links with places outside the affected focus, can result in the disease becoming widespread and consequently make any control strategies more difficult and expensive.(ABSTRACT TRUNCATED AT 250 WORDS)

Co-ordinated research programme on development and application of isotopic techniques in studies of vitamin A nutrition. Report of the first research co-ordination meeting

International Nuclear Information System (INIS)

1997-01-01

In Vitamin A nutrition, evaluations to ascertain the efficacy of intervention strategies are becoming increasingly important. However, state-of-the-art methods for evaluating vitamin A status often do not provide enough quantitative information on vitamin A status and the bioconversion of carotenoids, particularly in people with subclinical vitamin A deficiency. These limitations have had programmatic consequences. The principal reason the new Coordinated Research programme (CRP) was formulated was to improve techniques for measuring vitamin A status and the bioconversion of carotenoids to vitamin A with the expectation that the new methods could contribute meaningfully to field-based evaluations of the efficacy of intervention strategies. The International Atomic Energy Agency (IAEA) is sponsoring programmes to develop and transfer isotopic techniques to improve nutrition monitoring in developing countries. The New CRP ''Development and Application of Isotopic Techniques in Studies of Vitamin A Nutrition'' has seven teams, six of which are working to develop methods based on orally administered isotopically labelled retinol which will be a valid measure of whole body retinol (mostly hepatic reserves) and useful under typical field conditions, particularly in women and children with marginal vitamin A deficiency. The seventh team is biosynthesizing uniformly deuterated β-carotene by growing foods in deuterated water. This report summarizes the research to be undertaken, as presented at the first Research Co-ordination Meeting

Co-ordinated research programme on development and application of isotopic techniques in studies of vitamin A nutrition. Report of the first research co-ordination meeting

Energy Technology Data Exchange (ETDEWEB)

NONE

1998-12-31

In Vitamin A nutrition, evaluations to ascertain the efficacy of intervention strategies are becoming increasingly important. However, state-of-the-art methods for evaluating vitamin A status often do not provide enough quantitative information on vitamin A status and the bioconversion of carotenoids, particularly in people with subclinical vitamin A deficiency. These limitations have had programmatic consequences. The principal reason the new Coordinated Research programme (CRP) was formulated was to improve techniques for measuring vitamin A status and the bioconversion of carotenoids to vitamin A with the expectation that the new methods could contribute meaningfully to field-based evaluations of the efficacy of intervention strategies. The International Atomic Energy Agency (IAEA) is sponsoring programmes to develop and transfer isotopic techniques to improve nutrition monitoring in developing countries. The New CRP ``Development and Application of Isotopic Techniques in Studies of Vitamin A Nutrition`` has seven teams, six of which are working to develop methods based on orally administered isotopically labelled retinol which will be a valid measure of whole body retinol (mostly hepatic reserves) and useful under typical field conditions, particularly in women and children with marginal vitamin A deficiency. The seventh team is biosynthesizing uniformly deuterated {beta}-carotene by growing foods in deuterated water. This report summarizes the research to be undertaken, as presented at the first Research Co-ordination Meeting. Refs, figs, tabs.

Changes in the oligomerization potential of the division inhibitor UgtP co-ordinate Bacillus subtilis cell size with nutrient availability.

Science.gov (United States)

Chien, An-Chun; Zareh, Shannon Kian Gharabiklou; Wang, Yan Mei; Levin, Petra Anne

2012-11-01

How cells co-ordinate size with growth and development is a major, unresolved question in cell biology. In previous work we identified the glucosyltransferase UgtP as a division inhibitor responsible for increasing the size of Bacillus subtilis cells under nutrient-rich conditions. In nutrient-rich medium, UgtP is distributed more or less uniformly throughout the cytoplasm and concentrated at the cell poles and/or the cytokinetic ring. Under these conditions, UgtP interacts directly with FtsZ to inhibit division and increase cell size. Conversely, under nutrient-poor conditions, UgtP is sequestered away from FtsZ in punctate foci, and division proceeds unimpeded resulting in a reduction in average cell size. Here we report that nutrient-dependent changes in UgtP's oligomerization potential serve as a molecular rheostat to precisely co-ordinate B. subtilis cell size with nutrient availability. Our data indicate UgtP interacts with itself and the essential cell division protein FtsZ in a high-affinity manner influenced in part by UDP glucose, an intracellular proxy for nutrient availability. These findings support a model in which UDP-glc-dependent changes in UgtP's oligomerization potential shift the equilibrium between UgtP•UgtP and UgtP•FtsZ, fine-tuning the amount of FtsZ available for assembly into the cytokinetic ring and with it cell size. © 2012 Blackwell Publishing Ltd.

Ordinance on the Protection against X-Radiation Hazards (X-Ray Ordinance)

International Nuclear Information System (INIS)

1987-01-01

The ordinance refers to X-ray equipment and to stray radiation sources which generate X-radiation of at least 5 keV by means of accelerated electrons, and for this purpose apply an acceleration energy not exceeding 3 MeV. The ordinance does not apply to stray radiation sources which are used for the generation of ionizing particle radiation and thus are subject to the provisions of the Radiation Protection Ordinance. (orig./PW) [de

Summary report of the 1. research co-ordination meeting on compilation and evaluation of photonuclear data for applications

International Nuclear Information System (INIS)

1997-04-01

The present report contains the summary of the first Research Co-ordination Meeting on ''Compilation and Evaluation of Photonuclear Data for Applications'', held in Obninsk, Russia, from 3 to 6 December 1996. The project aims to produce a Technical Document on Photonuclear Data Library for Applications and to develop an IAEA Photonuclear Data Library. Summarized are the conclusions and recommendations of the meeting together with a detailed list of actions. Attached is the information sheet on the project, the agenda of the meeting and the list of participants along with extended abstracts of their presentations. Refs, figs, tabs

Network analysis of inflammatory genes and their transcriptional regulators in coronary artery disease.

Directory of Open Access Journals (Sweden)

Jiny Nair

Full Text Available Network analysis is a novel method to understand the complex pathogenesis of inflammation-driven atherosclerosis. Using this approach, we attempted to identify key inflammatory genes and their core transcriptional regulators in coronary artery disease (CAD. Initially, we obtained 124 candidate genes associated with inflammation and CAD using Polysearch and CADgene database for which protein-protein interaction network was generated using STRING 9.0 (Search Tool for the Retrieval of Interacting Genes and visualized using Cytoscape v 2.8.3. Based on betweenness centrality (BC and node degree as key topological parameters, we identified interleukin-6 (IL-6, vascular endothelial growth factor A (VEGFA, interleukin-1 beta (IL-1B, tumor necrosis factor (TNF and prostaglandin-endoperoxide synthase 2 (PTGS2 as hub nodes. The backbone network constructed with these five hub genes showed 111 nodes connected via 348 edges, with IL-6 having the largest degree and highest BC. Nuclear factor kappa B1 (NFKB1, signal transducer and activator of transcription 3 (STAT3 and JUN were identified as the three core transcription factors from the regulatory network derived using MatInspector. For the purpose of validation of the hub genes, 97 test networks were constructed, which revealed the accuracy of the backbone network to be 0.7763 while the frequency of the hub nodes remained largely unaltered. Pathway enrichment analysis with ClueGO, KEGG and REACTOME showed significant enrichment of six validated CAD pathways - smooth muscle cell proliferation, acute-phase response, calcidiol 1-monooxygenase activity, toll-like receptor signaling, NOD-like receptor signaling and adipocytokine signaling pathways. Experimental verification of the above findings in 64 cases and 64 controls showed increased expression of the five candidate genes and the three transcription factors in the cases relative to the controls (p<0.05. Thus, analysis of complex networks aid in the

Surface modification of materials by ion implantations for industrial and medical applications. Final report of a co-ordinated research project

International Nuclear Information System (INIS)

2000-07-01

The objectives of the Co-ordinated Research Project on Modification of Materials by Ion Treatment for Industrial Applications were to develop economically acceptable surface modification techniques leading to thick treated layers, to predict ion beam mixing and impurity atom migration during and after implantation, and to evaluate the tribological post-implantation properties and performance of treated components. This TECDOC summarises the current status and prospects in surface modification by ion implantation methodology and technology, providing new information in basic and applied research

Surface modification of materials by ion implantations for industrial and medical applications. Final report of a co-ordinated research project

Energy Technology Data Exchange (ETDEWEB)

NONE

2000-07-01

The objectives of the Co-ordinated Research Project on Modification of Materials by Ion Treatment for Industrial Applications were to develop economically acceptable surface modification techniques leading to thick treated layers, to predict ion beam mixing and impurity atom migration during and after implantation, and to evaluate the tribological post-implantation properties and performance of treated components. This TECDOC summarises the current status and prospects in surface modification by ion implantation methodology and technology, providing new information in basic and applied research.

Management strategies to utilize salt affected soils. Isotopic and conventional research methods. Results of a co-ordinated research programme

International Nuclear Information System (INIS)

1995-07-01

This document summarizes the results of a co-ordinated research programme on ''The Use of Nuclear Techniques for Improvement of Crop Production in Salt-affected Soils''. It aims at providing scientists experimental evidence of demonstrating technical feasibility of biological amelioration of salt affected soils as an alternative option of using expensive chemical amendments in soil reclamation complementing engineering structures of farm drainage systems or option of leaving the saline areas as barren lands in spite of the fact that arable agricultural lands have exhausted. 68 refs, 26 figs, 32 tabs

Management strategies to utilize salt affected soils. Isotopic and conventional research methods. Results of a co-ordinated research programme

Energy Technology Data Exchange (ETDEWEB)

NONE

1995-07-01

This document summarizes the results of a co-ordinated research programme on ``The Use of Nuclear Techniques for Improvement of Crop Production in Salt-affected Soils``. It aims at providing scientists experimental evidence of demonstrating technical feasibility of biological amelioration of salt affected soils as an alternative option of using expensive chemical amendments in soil reclamation complementing engineering structures of farm drainage systems or option of leaving the saline areas as barren lands in spite of the fact that arable agricultural lands have exhausted. 68 refs, 26 figs, 32 tabs.

Relative camera localisation in non-overlapping camera networks using multiple trajectories

NARCIS (Netherlands)

John, V.; Englebienne, G.; Kröse, B.J.A.

2012-01-01

In this article we present an automatic camera calibration algorithm using multiple trajectories in a multiple camera network with non-overlapping field-of-views (FOV). Visible trajectories within a camera FOV are assumed to be measured with respect to the camera local co-ordinate system.

Estimating the similarity of alternative Affymetrix probe sets using transcriptional networks

Science.gov (United States)

2013-01-01

Background The usefulness of the data from Affymetrix microarray analysis depends largely on the reliability of the files describing the correspondence between probe sets, genes and transcripts. Particularly, when a gene is targeted by several probe sets, these files should give information about the similarity of each alternative probe set pair. Transcriptional networks integrate the multiple correlations that exist between all probe sets and supply much more information than a simple correlation coefficient calculated for two series of signals. In this study, we used the PSAWN (Probe Set Assignment With Networks) programme we developed to investigate whether similarity of alternative probe sets resulted in some specific properties. Findings PSAWNpy delivered a full textual description of each probe set and information on the number and properties of secondary targets. PSAWNml calculated the similarity of each alternative probe set pair and allowed finding relationships between similarity and localisation of probes in common transcripts or exons. Similar alternative probe sets had very low negative correlation, high positive correlation and similar neighbourhood overlap. Using these properties, we devised a test that allowed grouping similar probe sets in a given network. By considering several networks, additional information concerning the similarity reproducibility was obtained, which allowed defining the actual similarity of alternative probe set pairs. In particular, we calculated the common localisation of probes in exons and in known transcripts and we showed that similarity was correctly correlated with them. The information collected on all pairs of alternative probe sets in the most popular 3’ IVT Affymetrix chips is available in tabular form at http://bns.crbm.cnrs.fr/download.html. Conclusions These processed data can be used to obtain a finer interpretation when comparing microarray data between biological conditions. They are particularly well

Estimating the similarity of alternative Affymetrix probe sets using transcriptional networks.

Science.gov (United States)

Bellis, Michel

2013-03-21

The usefulness of the data from Affymetrix microarray analysis depends largely on the reliability of the files describing the correspondence between probe sets, genes and transcripts. Particularly, when a gene is targeted by several probe sets, these files should give information about the similarity of each alternative probe set pair. Transcriptional networks integrate the multiple correlations that exist between all probe sets and supply much more information than a simple correlation coefficient calculated for two series of signals. In this study, we used the PSAWN (Probe Set Assignment With Networks) programme we developed to investigate whether similarity of alternative probe sets resulted in some specific properties. PSAWNpy delivered a full textual description of each probe set and information on the number and properties of secondary targets. PSAWNml calculated the similarity of each alternative probe set pair and allowed finding relationships between similarity and localisation of probes in common transcripts or exons. Similar alternative probe sets had very low negative correlation, high positive correlation and similar neighbourhood overlap. Using these properties, we devised a test that allowed grouping similar probe sets in a given network. By considering several networks, additional information concerning the similarity reproducibility was obtained, which allowed defining the actual similarity of alternative probe set pairs. In particular, we calculated the common localisation of probes in exons and in known transcripts and we showed that similarity was correctly correlated with them. The information collected on all pairs of alternative probe sets in the most popular 3' IVT Affymetrix chips is available in tabular form at http://bns.crbm.cnrs.fr/download.html. These processed data can be used to obtain a finer interpretation when comparing microarray data between biological conditions. They are particularly well adapted for searching 3' alternative

Homologous regions of Fen1 and p21Cip1 compete for binding to the same site on PCNA: a potential mechanism to co-ordinate DNA replication and repair.

Science.gov (United States)

Warbrick, E; Lane, D P; Glover, D M; Cox, L S

1997-05-15

Following genomic damage, the cessation of DNA replication is co-ordinated with onset of DNA repair; this co-ordination is essential to avoid mutation and genomic instability. To investigate these phenomena, we have analysed proteins that interact with PCNA, which is required for both DNA replication and repair. One such protein is p21Cip1, which inhibits DNA replication through its interaction with PCNA, while allowing repair to continue. We have identified an interaction between PCNA and the structure specific nuclease, Fen1, which is involved in DNA replication. Deletion analysis suggests that p21Cip1 and Fen1 bind to the same region of PCNA. Within Fen1 and its homologues a small region (10 amino acids) is sufficient for PCNA binding, which contains an 8 amino acid conserved PCNA-binding motif. This motif shares critical residues with the PCNA-binding region of p21Cip1. A PCNA binding peptide from p21Cip1 competes with Fen1 peptides for binding to PCNA, disrupts the Fen1-PCNA complex in replicating cell extracts, and concomitantly inhibits DNA synthesis. Competition between homologous regions of Fen1 and p21Cip1 for binding to the same site on PCNA may provide a mechanism to co-ordinate the functions of PCNA in DNA replication and repair.

Bulk hydrogen analysis, using neutrons. Final report of the second research co-ordination meeting

International Nuclear Information System (INIS)

1998-11-01

The aims of the Second Co-ordination Meting (RCM) of the Coordinated Research Programme (CRP) were to report on and review progress against the work programme set at the beginning of the CRP and to discuss the work plans for the second half of the programme. In many cases hydrogen is required to be measured in a bulk medium rather than merely at a surface. For this reason neutrons are used due to their high penetrating power in dense material. In addition, the mass attenuation coefficient for neutrons in hydrogen is significantly larger than for all other elements, meaning that neutrons have a higher probability of interacting with hydrogen than with other elements in the sample matrix. Neutrons have been used in the following areas: Fast Neutron Transmission, Scattering and Activation Technique; Digital Neutron Imaging; Hydrogen Detection by Epithermal Neutrons; Microscopic Behaviour of Hydrogen in Bulk Materials

Compilation of anatomical, physiological and metabolic characteristics for a Reference Asian Man. Volume 1: data summary and conclusions. Results of a co-ordinated research programme 1988-1993

International Nuclear Information System (INIS)

1998-02-01

The Co-ordinated Research Programme (CRP) on Compilation of Anatomical, Physiological and Metabolic Characteristics for a Reference Asian Man has been conducted as a programme of the IAEA Regional Co-operative Agreement (RCA) for Asia and the Pacific. The CRP was conducted to provide data for radiation protection purposes that is relevant to the biokinetic and dosimetric characteristics of the ethnic populations in the Asian region. The radiological protection decisions that had to be made in the RCA member States following the Chernobyl accident were a significant motivation for establishing the CRP. Eleven RCA Member States participated in the CRP. Research co-ordination meetings (RCMs) for the CRP were held in Mito City, Japan, 17-21 October 1988 and Bhabha Atomic Research Centre, India, 8-12 April 1991. The concluding meeting was held in Tianjin, China, 25-29 October 1993. This publication is divided into two volumes: Volume 1 contains a summary of the data and conclusions from the project and Volume 2 the reports from participating countries

Compilation of anatomical, physiological and metabolic characteristics for a Reference Asian Man. Volume 1: data summary and conclusions. Results of a co-ordinated research programme 1988-1993

Energy Technology Data Exchange (ETDEWEB)

NONE

1998-02-01

The Co-ordinated Research Programme (CRP) on Compilation of Anatomical, Physiological and Metabolic Characteristics for a Reference Asian Man has been conducted as a programme of the IAEA Regional Co-operative Agreement (RCA) for Asia and the Pacific. The CRP was conducted to provide data for radiation protection purposes that is relevant to the biokinetic and dosimetric characteristics of the ethnic populations in the Asian region. The radiological protection decisions that had to be made in the RCA member States following the Chernobyl accident were a significant motivation for establishing the CRP. Eleven RCA Member States participated in the CRP. Research co-ordination meetings (RCMs) for the CRP were held in Mito City, Japan, 17-21 October 1988 and Bhabha Atomic Research Centre, India, 8-12 April 1991. The concluding meeting was held in Tianjin, China, 25-29 October 1993. This publication is divided into two volumes: Volume 1 contains a summary of the data and conclusions from the project and Volume 2 the reports from participating countries. Refs, figs, tabs.

Radiation protection Ordinance

International Nuclear Information System (INIS)

1976-06-01

This Ordinance lays down the licensing system for activities in Switzerland involving possible exposure to radiation, with the exception of nuclear installations, fuels and radioactive waste which, under the 1959 Atomic Energy Act, are subject to licensing. The Ordinance applies to the production, handling, use, storage, transport, disposal, import and export of radioactive substances and devices and articles containing them; and generally to any activity involving hazards caused by ionizing radiation. The Federal Public Health Office is the competent authority for granting licences. Provision is also made for the administrative conditions to be complied with for obtaining such licences as well as for technical measures required when engaged in work covered by the Ordinance. This consolidated version of the Ordinance contains all the successive amendments up to 26 September 1988. (NEA) [fr

The Second Ordinance for Amendment of the Radiation Protection Ordinance

International Nuclear Information System (INIS)

Czajka, D.

1989-01-01

This Second Ordinance for Amendment of the Radiation Protection Ordinance has modified the most important legal provisions supplementing the Atomic Energy Act. But looking closer at the revised version of the Ordinance, many an amendment turns out to be just a new facade on the old brickwork. The article critically reviews the most important amendments, stating that the main principles have remained untouched, and discussing the modification of limiting values, the definition of regulatory scopes, the new meaning of the term 'wastes containing nuclear fuel', and the regulatory scope of provisions governing radioactive substances and their medical applications. (orig./RST) [de

Localizing potentially active post-transcriptional regulations in the Ewing's sarcoma gene regulatory network

Directory of Open Access Journals (Sweden)

Delyon Bernard

2010-11-01

Full Text Available Abstract Background A wide range of techniques is now available for analyzing regulatory networks. Nonetheless, most of these techniques fail to interpret large-scale transcriptional data at the post-translational level. Results We address the question of using large-scale transcriptomic observation of a system perturbation to analyze a regulatory network which contained several types of interactions - transcriptional and post-translational. Our method consisted of post-processing the outputs of an open-source tool named BioQuali - an automatic constraint-based analysis mimicking biologist's local reasoning on a large scale. The post-processing relied on differences in the behavior of the transcriptional and post-translational levels in the network. As a case study, we analyzed a network representation of the genes and proteins controlled by an oncogene in the context of Ewing's sarcoma. The analysis allowed us to pinpoint active interactions specific to this cancer. We also identified the parts of the network which were incomplete and should be submitted for further investigation. Conclusions The proposed approach is effective for the qualitative analysis of cancer networks. It allows the integrative use of experimental data of various types in order to identify the specific information that should be considered a priority in the initial - and possibly very large - experimental dataset. Iteratively, new dataset can be introduced into the analysis to improve the network representation and make it more specific.

Establishment of an international reference data library of nuclear activation cross sections. Summary report of the first research co-ordination meeting held in Debrecen, Hungary, from 4 to 7 October 1994

International Nuclear Information System (INIS)

Pashchenko, A.B.

1995-02-01

The report contains the Summary of the First IAEA Research Co-ordination Meeting (RCM) of the new Co-ordinated Research Programme (CRP) on ''Establishment of an International Reference Data Library of Nuclear Activation Cross Sections''. The meeting was organized by the IAEA Nuclear Data Section with co-operation and assistance of local organizers from the Institute of Experimental Physics and held in Debrecen, Hungary, from 4 to 7 October 1994. The purpose of the RCM was to discuss the scope and goals of the CRP, to report and evaluate the first results of the research carried out by each participating laboratory, to review the current tasks, identify further actions of participants and agree on the coordination of work under this CRP. The detailed agenda, the list of participants, conclusions and recommendations of the meeting are presented in the summary report. (author)

Global transcriptional regulatory network for Escherichia coli robustly connects gene expression to transcription factor activities

DEFF Research Database (Denmark)

Fang, Xin; Sastry, Anand; Mih, Nathan

2017-01-01

Transcriptional regulatory networks (TRNs) have been studied intensely for >25 y. Yet, even for the Escherichia coli TRN-probably the best characterized TRN-several questions remain. Here, we address three questions: (i) How complete is our knowledge of the E. coli TRN; (ii) how well can we predi...

Unraveling the WRKY transcription factors network in Arabidopsis Thaliana by integrative approach

Directory of Open Access Journals (Sweden)

Mouna Choura

2015-06-01

Full Text Available The WRKY transcription factors superfamily are involved in diverse biological processes in plants including response to biotic and abiotic stresses and plant immunity. Protein-protein interaction network is a useful approach for understanding these complex processes. The availability of Arabidopsis Thaliana interactome offers a good opportunity to do get a global view of protein network. In this work, we have constructed the WRKY transcription factor network by combining different sources of evidence and we characterized its topological features using computational tools. We found that WRKY network is a hub-based network involving multifunctional proteins denoted as hubs such as WRKY 70, WRKY40, WRKY 53, WRKY 60, WRKY 33 and WRKY 51. Functional annotation showed seven functional modules particularly involved in biotic stress and defense responses. Furthermore, the gene ontology and pathway enrichment analysis revealed that WRKY proteins are mainly involved in plant-pathogen interaction pathways and their functions are directly related to the stress response and immune system process.

Relation of Transcriptional Factors to the Expression and Activity of Cytochrome P450 and UDP-Glucuronosyltransferases 1A in Human Liver: Co-Expression Network Analysis.

Science.gov (United States)

Zhong, Shilong; Han, Weichao; Hou, Chuqi; Liu, Junjin; Wu, Lili; Liu, Menghua; Liang, Zhi; Lin, Haoming; Zhou, Lili; Liu, Shuwen; Tang, Lan

2017-01-01

Cytochrome P450 (CYPs) and UDP-glucuronosyltransferases (UGTs) play important roles in the metabolism of exogenous and endogenous compounds. The gene transcription of CYPs and UGTs can be enhanced or reduced by transcription factors (TFs). This study aims to explore novel TFs involved in the regulatory network of human hepatic UGTs/CYPs. Correlations between the transcription levels of 683 key TFs and CYPs/UGTs in three different human liver expression profiles (n = 640) were calculated first. Supervised weighted correlation network analysis (sWGCNA) was employed to define hub genes among the selected TFs. The relationship among 17 defined TFs, CYPs/UGTs expression, and activity were evaluated in 30 liver samples from Chinese patients. The positive controls (e.g., PPARA, NR1I2, NR1I3) and hub TFs (NFIA, NR3C2, and AR) in the Grey sWGCNA Module were significantly and positively associated with CYPs/UGTs expression. And the cancer- or inflammation-related TFs (TEAD4, NFKB2, and NFKB1) were negatively associated with mRNA expression of CYP2C9/CYP2E1/UGT1A9. Furthermore, the effect of NR1I2, NR1I3, AR, TEAD4, and NFKB2 on CYP450/UGT1A gene transcription translated into moderate influences on enzyme activities. To our knowledge, this is the first study to integrate Gene Expression Omnibus (GEO) datasets and supervised weighted correlation network analysis (sWGCNA) for defining TFs potentially related to CYPs/UGTs. We detected several novel TFs involved in the regulatory network of hepatic CYPs and UGTs in humans. Further validation and investigation may reveal their exact mechanism of CYPs/UGTs regulation.

The thematic plant life assessment network (PLAN)

Energy Technology Data Exchange (ETDEWEB)

Hurst, R C; McGarry, D [EC/JRC Institute for Advanced Materials, Petten (Netherlands); Pedersen, H H [Brite Euram DG XII, Brussels (Belgium)

1999-12-31

The Plant Life Assessment Network (PLAN) is a Brite Euram Type II Thematic Network, initiated by the European Commission to facilitate structured co-operation between all cost shared action projects already funded by the Commission which fall under this common technical theme. The projects involved address a multiplicity of problems associated with plant life assessment and are drawn from Brite-Euram, Standards, Measurement and Testing, Nuclear Fission Safety and Esprit EC programmes. The main aim of the Network is to initiate, maintain and monitor a fruitful co-operation process between completed, ongoing and future EC R and D projects, thereby promoting improved cross fertilization and enhanced industrial exploitation of R and D results. As the project is in its infancy, this presentation covers the background to the initiative in some detail. In particular two key aspects are highlighted, namely, the requirement of the EC to launch such a network in the area of plant life assessment including its evolution from two small Thematic Research Actions and, secondly, the mechanism for structuring the Network in an ordered and proven way along the lines of the EC/JRC European Networks, PISC, NESC, AMES, ENIQ, ENAIS and EPERC. The operating and financial structure of the Network is detailed with reference made to the role of the executive Steering Committee, The Network Project Leader and the Network Financial Co-ordinator. Each of the 58 projects involved in the Network, representing a wide range of industrial sectors and disciplines, is distributed in terms of their efforts between 4 disciplinary Clusters covering Inspection, Instrumentation and Monitoring, Structural Mechanics and Maintenance. For each of these Clusters, an expert has been appointed as a Project Technical Auditor to support the elected Cluster Co-ordinator to define Cluster Tasks, which contribute to the overall objectives of the project. From the Project Representatives, Cluster Task Leaders and

The thematic plant life assessment network (PLAN)

Energy Technology Data Exchange (ETDEWEB)

Hurst, R.C.; McGarry, D. [EC/JRC Institute for Advanced Materials, Petten (Netherlands); Pedersen, H.H. [Brite Euram DG XII, Brussels (Belgium)

1998-12-31

The Plant Life Assessment Network (PLAN) is a Brite Euram Type II Thematic Network, initiated by the European Commission to facilitate structured co-operation between all cost shared action projects already funded by the Commission which fall under this common technical theme. The projects involved address a multiplicity of problems associated with plant life assessment and are drawn from Brite-Euram, Standards, Measurement and Testing, Nuclear Fission Safety and Esprit EC programmes. The main aim of the Network is to initiate, maintain and monitor a fruitful co-operation process between completed, ongoing and future EC R and D projects, thereby promoting improved cross fertilization and enhanced industrial exploitation of R and D results. As the project is in its infancy, this presentation covers the background to the initiative in some detail. In particular two key aspects are highlighted, namely, the requirement of the EC to launch such a network in the area of plant life assessment including its evolution from two small Thematic Research Actions and, secondly, the mechanism for structuring the Network in an ordered and proven way along the lines of the EC/JRC European Networks, PISC, NESC, AMES, ENIQ, ENAIS and EPERC. The operating and financial structure of the Network is detailed with reference made to the role of the executive Steering Committee, The Network Project Leader and the Network Financial Co-ordinator. Each of the 58 projects involved in the Network, representing a wide range of industrial sectors and disciplines, is distributed in terms of their efforts between 4 disciplinary Clusters covering Inspection, Instrumentation and Monitoring, Structural Mechanics and Maintenance. For each of these Clusters, an expert has been appointed as a Project Technical Auditor to support the elected Cluster Co-ordinator to define Cluster Tasks, which contribute to the overall objectives of the project. From the Project Representatives, Cluster Task Leaders and

The influence of boundary conditions on resonant frequencies of cavities in 3-D FDTD algorithm using non-orthogonal co-ordinates

Energy Technology Data Exchange (ETDEWEB)

Zhao, L.; Tong, L.S. [Southeast Univ., Nanjing (China). Research Inst. of Electronics; Carter, R.G. [Lancaster Univ. (United Kingdom). Engineering Dept.

1994-09-01

The 3-dimensional finite-difference time-domain method in non-orthogonal co-ordinates (non-standard FDTD) is used to calculate the frequencies of resonators. The numerical boundary conditions of the method are presented. The Influences of boundary conditions and discrete meshes on the numerical accuracy are investigated. The authors present the nonstandard FDTD method using the boundary-orthogonal mesh and equivalent dielectric constant so that the error is reduced from 8.66% to 3.0% for the cylindrical cavity loaded by a dielectric button.

Co-ordinated research programme on nuclear techniques for toxic elements in foodstuffs

International Nuclear Information System (INIS)

1988-01-01

The purpose of this Co-ordinated Research Programme (CRP) is to obtain comparative data on the existing elemental concentrations of potentially toxic elements in foodstuffs in various countries. This study is also intended to provide information on the dietary intakes of toxic elements as a means to detect potential health hazards to the population groups concerned. This study has important economic implications since trade in foodstuffs is dependent on compliance with regulations pertaining to maximum permissible concentrations. An important supplementary purpose of the programme is to help establish analytical expertise for work of this kind in individual countries, allowing such laboratories to offer analytical quality control services. The programme has centred its objective on the determination of important toxic elements such as As, Cd, Cr, Hg, Pb and Se, in addition to Cu, Sb and Zn, which are also potentially toxic but are generally of minor importance from the point of view of public health. The matrices of interest are foodstuffs which comprise together more than 50% of the average daily intake. Drinking water is also of high importance and should be analysed as well. Refs, figs and tabs

A genomic approach to identify regulatory nodes in the transcriptional network of systemic acquired resistance in plants.

Directory of Open Access Journals (Sweden)

Dong Wang

2006-11-01

Full Text Available Many biological processes are controlled by intricate networks of transcriptional regulators. With the development of microarray technology, transcriptional changes can be examined at the whole-genome level. However, such analysis often lacks information on the hierarchical relationship between components of a given system. Systemic acquired resistance (SAR is an inducible plant defense response involving a cascade of transcriptional events induced by salicylic acid through the transcription cofactor NPR1. To identify additional regulatory nodes in the SAR network, we performed microarray analysis on Arabidopsis plants expressing the NPR1-GR (glucocorticoid receptor fusion protein. Since nuclear translocation of NPR1-GR requires dexamethasone, we were able to control NPR1-dependent transcription and identify direct transcriptional targets of NPR1. We show that NPR1 directly upregulates the expression of eight WRKY transcription factor genes. This large family of 74 transcription factors has been implicated in various defense responses, but no specific WRKY factor has been placed in the SAR network. Identification of NPR1-regulated WRKY factors allowed us to perform in-depth genetic analysis on a small number of WRKY factors and test well-defined phenotypes of single and double mutants associated with NPR1. Among these WRKY factors we found both positive and negative regulators of SAR. This genomics-directed approach unambiguously positioned five WRKY factors in the complex transcriptional regulatory network of SAR. Our work not only discovered new transcription regulatory components in the signaling network of SAR but also demonstrated that functional studies of large gene families have to take into consideration sequence similarity as well as the expression patterns of the candidates.

Isotope and geochemical techniques applied to geothermal investigations. Proceedings of the final research co-ordination meeting held in Dumaguete City, Philippines, 12-15 October 1993

Energy Technology Data Exchange (ETDEWEB)

NONE

1995-02-01

In the last ten years, geothermal energy has emerged as an alternative source of energy for electrical and non-electrical uses. In some of these countries geothermal energy contributed up to 40% of the national power requirement. In others, it is being widely used in agriculture, aquaculture, air conditioning, kiln and fruit drying, pulp and paper industry, greenhouses and food processing. The Co-ordinated Research Programme (CRP) on the Application of Isotope and Geochemical Techniques to Geothermal Exploration in the Middle East, Asia, the Pacific and Africa aimed at integrating isotope techniques with traditional geochemical and hydrological methods in understanding the characteristics of geothermal systems. It involved isotopic and chemical surveys of hot to cold springs, wells and rivers in exploration areas as well as in exploited reservoirs where problems such as return of injected wastewaters are experienced. This publication is a compilation of the scientific papers presented at the final Research Co-ordination Meeting, held in Dumaguete City, Philippines, from 12 to 15 October 1993. Refs, figs and tabs.

The application of isotope techniques to the assessment of aquifer systems in major urban areas. Final report of a co-ordinated research project 1997-2000

International Nuclear Information System (INIS)

2002-07-01

Aquifer systems in most urban areas have been impacted to varying degrees by sustained exploitation and the future availability of water is being threatened by depleting aquifers or water quality degradation. Improved methods for the assessment and management of groundwater resources in major urban areas, therefore, are issues of high priority for most countries. The IAEA has, over last four decades, co-ordinated the development, adaptation, and testing of isotope techniques for hydrological applications. A number of techniques and methodologies that are now established for water resources management are potentially useful for characterizing the short and long term changes resulting from the extensive use of aquifers in and near urban areas. The application of isotope techniques in urban hydrology was the focus of this co-ordinated research project (CRP). This report provides the final results of the CRP, and is expected to be of interest to scientists, managers and planners involved in water resources assessment in urban areas. This publication contains seven individual reports, each of them was indexed separately

Research and development on procedures to stabilize acaricides in livestock dips. Proceedings of a final research co-ordination meeting

International Nuclear Information System (INIS)

1997-11-01

Ticks and mites are serious ectoparasites of livestock in many countries. As vectors of animal diseases they pose a threat to livestock production. Traditionally, different types of acaricides are used to control them. One of the most commonly used tick control techniques is to force animals to walk through an acaricide suspension in a trough or Cattle Dip. Dipping is quite effective as the entire body of the animal gets treated with the acaricide. However, with increased usage the concentration of the acaricide in the 'dip' declines due to removal by the animal and degradation by biological and chemicals processes. The dissipation of the acaricide results in loss of efficacy of the 'dip', and may also enhance the development of resistance by the ectoparasites to the acaricides. Maintenance of an effective concentration, by periodic recharge or stabilization of the acaricide, is essential to assure efficient and cost-effective control and to minimize chances of resistance to develop. In 1990, the FAO/IAEA Joint Division, recognizing the need for co-ordinated research on studying the dissipation of acaricides in cattle dips and developing procedures to stabilize them, established a 5-year Co-ordinated Research Programme on Development of Procedures to Stabilize Acaricides in Livestock Dips and of Simplified Methods to Measure Their Concentration, Using Nuclear Techniques. In initiating this programme, the Joint Division recognized that major gaps exist in the knowledge in this area which, if filled, would greatly aid developing countries in their effort to more effectively use acaricides to protect animal health. This TECDOC reports the accomplishments of this programme

Reverse engineering of TLX oncogenic transcriptional networks identifies RUNX1 as tumor suppressor in T-ALL.

Science.gov (United States)

Della Gatta, Giusy; Palomero, Teresa; Perez-Garcia, Arianne; Ambesi-Impiombato, Alberto; Bansal, Mukesh; Carpenter, Zachary W; De Keersmaecker, Kim; Sole, Xavier; Xu, Luyao; Paietta, Elisabeth; Racevskis, Janis; Wiernik, Peter H; Rowe, Jacob M; Meijerink, Jules P; Califano, Andrea; Ferrando, Adolfo A

2012-02-26

The TLX1 and TLX3 transcription factor oncogenes have a key role in the pathogenesis of T cell acute lymphoblastic leukemia (T-ALL). Here we used reverse engineering of global transcriptional networks to decipher the oncogenic regulatory circuit controlled by TLX1 and TLX3. This systems biology analysis defined T cell leukemia homeobox 1 (TLX1) and TLX3 as master regulators of an oncogenic transcriptional circuit governing T-ALL. Notably, a network structure analysis of this hierarchical network identified RUNX1 as a key mediator of the T-ALL induced by TLX1 and TLX3 and predicted a tumor-suppressor role for RUNX1 in T cell transformation. Consistent with these results, we identified recurrent somatic loss-of-function mutations in RUNX1 in human T-ALL. Overall, these results place TLX1 and TLX3 at the top of an oncogenic transcriptional network controlling leukemia development, show the power of network analyses to identify key elements in the regulatory circuits governing human cancer and identify RUNX1 as a tumor-suppressor gene in T-ALL.

Co-ordinated research project: ingestion and organ content of trace elements of importance in radiological protection. Reference Asian man project, phase 2

International Nuclear Information System (INIS)

1998-01-01

This First Research Co-ordination Meeting on Ingestion and Organ Content of Trace Elements was held at the Hotel Rembrandt,Quezon City, the Philippines. Information on individual participant's plans for participation in the CRP, and the progress achieved so far on this and related topics is presented in each country's report. The major themes covered include sampling of diets and tissues, analytical techniques used, analytical quality assurance and data reporting of results

Update of X- and γ-ray decay data standards for detector calibration and other applications. Summary report of the 1. research co-ordination meeting

International Nuclear Information System (INIS)

Herman, M.; Nichols, A.

1999-07-01

The discussions and conclusions of the First Research Co-ordination Meeting to Update X- and γ-ray Decay Data Standards for Detector Calibration are described in this summary report. The agreed list of radionuclides to be evaluated is given, along with the evaluation procedures and assignment of tasks among participants of the CRP. 14 presentations given at the meeting were indexed separately

Use of immunoassay technologies for the diagnosis and control of foot-and-mouth disease in Southeast Asia. Proceedings of a final research co-ordination meeting

Energy Technology Data Exchange (ETDEWEB)

NONE

2000-05-01

The IAEA and FAO, through the activities of the Joint FAO/IAEA Division of Nuclear Techniques in Food and Agriculture and their technical co-operation programmes, support the introduction of nuclear and related techniques to improve animal disease diagnosis and surveillance in developing countries. At a workshop hosted by the Australian Centre for International Agricultural Research (ACIAR) and the Department of Livestock Development (DLD) of Thailand, in Lampang, Thailand, in September 1993, an analysis of the results of an ACIAR project on foot-and-mouth disease (FMD) as well as national reports from twelve other Asian countries clearly demonstrated that the control and eradication of FMD in Asia is both a national and regional problem (vaccination alone costs in the region US $380 million annually). It was concluded that a co-ordinated regional approach was the only realistic way forward for controlling and eventually eradicating FMD from the region. It was agreed that the OIE would lead this co-ordinated regional programme in close co-operation with FAO, ACIAR, other relevant international organizations and national governments. Results of the ACIAR Project also clearly demonstrated the immense value of ELISA based systems for the diagnosis and control of FMD within Thailand. The meeting, therefore, recommended that an essential component of a regional strategy was to have, as a minimum, ELISA tests for the detection of FMD virus and for assessing the antibody status of livestock population in each country in the region. In support of this concept, the Joint FAO/IAEA Division of Nuclear Techniques in Food and Agriculture established a co-ordinated research project (CRP) with the primary aim of establishing and documenting appropriate mechanisms for introducing and using ELISA based technologies for FMD diagnosis and surveillance in participating countries. At the completion of this Project, the region is left with a national ELISA based diagnostic facility in

Use of immunoassay technologies for the diagnosis and control of foot-and-mouth disease in Southeast Asia. Proceedings of a final research co-ordination meeting

International Nuclear Information System (INIS)

2000-05-01

The IAEA and FAO, through the activities of the Joint FAO/IAEA Division of Nuclear Techniques in Food and Agriculture and their technical co-operation programmes, support the introduction of nuclear and related techniques to improve animal disease diagnosis and surveillance in developing countries. At a workshop hosted by the Australian Centre for International Agricultural Research (ACIAR) and the Department of Livestock Development (DLD) of Thailand, in Lampang, Thailand, in September 1993, an analysis of the results of an ACIAR project on foot-and-mouth disease (FMD) as well as national reports from twelve other Asian countries clearly demonstrated that the control and eradication of FMD in Asia is both a national and regional problem (vaccination alone costs in the region US $380 million annually). It was concluded that a co-ordinated regional approach was the only realistic way forward for controlling and eventually eradicating FMD from the region. It was agreed that the OIE would lead this co-ordinated regional programme in close co-operation with FAO, ACIAR, other relevant international organizations and national governments. Results of the ACIAR Project also clearly demonstrated the immense value of ELISA based systems for the diagnosis and control of FMD within Thailand. The meeting, therefore, recommended that an essential component of a regional strategy was to have, as a minimum, ELISA tests for the detection of FMD virus and for assessing the antibody status of livestock population in each country in the region. In support of this concept, the Joint FAO/IAEA Division of Nuclear Techniques in Food and Agriculture established a co-ordinated research project (CRP) with the primary aim of establishing and documenting appropriate mechanisms for introducing and using ELISA based technologies for FMD diagnosis and surveillance in participating countries. At the completion of this Project, the region is left with a national ELISA based diagnostic facility in

Ordinal measures for iris recognition.

Science.gov (United States)

Sun, Zhenan; Tan, Tieniu

2009-12-01

Images of a human iris contain rich texture information useful for identity authentication. A key and still open issue in iris recognition is how best to represent such textural information using a compact set of features (iris features). In this paper, we propose using ordinal measures for iris feature representation with the objective of characterizing qualitative relationships between iris regions rather than precise measurements of iris image structures. Such a representation may lose some image-specific information, but it achieves a good trade-off between distinctiveness and robustness. We show that ordinal measures are intrinsic features of iris patterns and largely invariant to illumination changes. Moreover, compactness and low computational complexity of ordinal measures enable highly efficient iris recognition. Ordinal measures are a general concept useful for image analysis and many variants can be derived for ordinal feature extraction. In this paper, we develop multilobe differential filters to compute ordinal measures with flexible intralobe and interlobe parameters such as location, scale, orientation, and distance. Experimental results on three public iris image databases demonstrate the effectiveness of the proposed ordinal feature models.

A CoAP-Based Network Access Authentication Service for Low-Power Wide Area Networks: LO-CoAP-EAP

Directory of Open Access Journals (Sweden)

Dan Garcia-Carrillo

2017-11-01

Full Text Available The Internet-of-Things (IoT landscape is expanding with new radio technologies. In addition to the Low-Rate Wireless Personal Area Network (LR-WPAN, the recent set of technologies conforming the so-called Low-Power Wide Area Networks (LP-WAN offers long-range communications, allowing one to send small pieces of information at a reduced energy cost, which promotes the creation of new IoT applications and services. However, LP-WAN technologies pose new challenges since they have strong limitations in the available bandwidth. In general, a first step prior to a smart object being able to gain access to the network is the process of network access authentication. It involves authentication, authorization and key management operations. This process is of vital importance for operators to control network resources. However, proposals for managing network access authentication in LP-WAN are tailored to the specifics of each technology, which could introduce interoperability problems in the future. In this sense, little effort has been put so far into providing a wireless-independent solution for network access authentication in the area of LP-WAN. To fill this gap, we propose a service named Low-Overhead CoAP-EAP (LO-CoAP-EAP, which is based on previous work designed for LR-WPAN. LO-CoAP-EAP integrates the use of Authentication, Authorization and Accounting (AAA infrastructures and the Extensible Authentication Protocol (EAP protocol. For this integration, we use the Constrained Application Protocol (CoAP to design a network authentication service independent of the type of LP-WAN technology. LO-CoAP-EAP represents a trade-off between flexibility, wireless technology independence, scalability and performance in LP-WAN.

A CoAP-Based Network Access Authentication Service for Low-Power Wide Area Networks: LO-CoAP-EAP.

Science.gov (United States)

Garcia-Carrillo, Dan; Marin-Lopez, Rafael; Kandasamy, Arunprabhu; Pelov, Alexander

2017-11-17

The Internet-of-Things (IoT) landscape is expanding with new radio technologies. In addition to the Low-Rate Wireless Personal Area Network (LR-WPAN), the recent set of technologies conforming the so-called Low-Power Wide Area Networks (LP-WAN) offers long-range communications, allowing one to send small pieces of information at a reduced energy cost, which promotes the creation of new IoT applications and services. However, LP-WAN technologies pose new challenges since they have strong limitations in the available bandwidth. In general, a first step prior to a smart object being able to gain access to the network is the process of network access authentication. It involves authentication, authorization and key management operations. This process is of vital importance for operators to control network resources. However, proposals for managing network access authentication in LP-WAN are tailored to the specifics of each technology, which could introduce interoperability problems in the future. In this sense, little effort has been put so far into providing a wireless-independent solution for network access authentication in the area of LP-WAN. To fill this gap, we propose a service named Low-Overhead CoAP-EAP (LO-CoAP-EAP), which is based on previous work designed for LR-WPAN. LO-CoAP-EAP integrates the use of Authentication, Authorization and Accounting (AAA) infrastructures and the Extensible Authentication Protocol (EAP) protocol. For this integration, we use the Constrained Application Protocol (CoAP) to design a network authentication service independent of the type of LP-WAN technology. LO-CoAP-EAP represents a trade-off between flexibility, wireless technology independence, scalability and performance in LP-WAN.

Safety cases for radioactive waste disposal facilities: guidance on confidence building and regulatory review IAEA-ASAM co-ordinated research project

International Nuclear Information System (INIS)

Ben Belfadhel, M.; Bennett, D.G.; Metcalf, P.; Nys, V.; Goldammer, W.

2008-01-01

The IAEA has been conducting two co-ordinated research programmes (CRPs) projects to develop and apply improved safety assessment methodologies for near-surface radioactive waste disposal facilities. The more recent of these projects, ASAM (application of safety assessment methodologies), included a Regulatory Review Working Group (RRWG) which has been working to develop guidance on how to gain confidence in safety assessments and safety cases, and on how to conduct regulatory reviews of safety assessments. This paper provides an overview of the ASAM project, focusing on the safety case and regulatory review. (authors)

Diagnosis and epidemiology of animal diseases in Latin America. Proceedings of the final research co-ordination meetings of FAO/IAEA/SIDA co-ordinated research projects

International Nuclear Information System (INIS)

1998-11-01

In 1986 the Animal Production and Health Section of the Joint FAO/IAEA Division of Nuclear Techniques in Food and Agriculture embarked on a programme of support to scientists in developing countries focused on improving animal disease diagnosis through the use of nuclear and related technologies. As part of this programme the Swedish International Development Authority (SIDA) agreed to provide support for a FAO/IAEA Co-ordinated Research Project (CRP) concerned with the introduction and use of such technologies in Latin America. Through this programme, which was entitled Regional Network for Latin America on Animal Disease Diagnosis Using Immunoassays and Labeled DNA Probe Techniques, studies were supported on a number of diseases considered to be of substantial economic and social importance to the region, including brucellosis, tuberculosis, babesiosis, leukosis, bluetongue and chlamydia infection in cattle and psedorabies in pigs. One significant conclusion was that large number of diseases studied limited research findings owing to the lack of a critical mass of scientists studying any one specific disease problem. Thus when in 1991, SIDA agreed to follow-up CRP on Immunoassay Methods for the Diagnosis and Epidemiology of Animal Diseases in Latin America, the work was restricted to three diseases, i.e. foot-and-mouth disease (FMD), bovine brucellosis and bovine babesiosis. In 1994 results were presented in Guadeloupe, Lesser Antilles, France. The outcome of this meeting was the validation of ELISAs for the above mentioned diseases and a recommendation that future research should focus on diagnosis and epidemiology to support existing control and eradication campaigns against the two diseases of major importance in the region (FMD and Brucellosis). A follow-up CRP (1994-1997) entitled the Use of ELISA for Epidemiology and Control of Foot-and-Mouth Disease and Bovine Brucellosis in Latin America focused on the further validation and subsequent use of a

Diagnosis and epidemiology of animal diseases in Latin America. Proceedings of the final research co-ordination meetings of FAO/IAEA/SIDA co-ordinated research projects

Energy Technology Data Exchange (ETDEWEB)

NONE

1998-11-01

In 1986 the Animal Production and Health Section of the Joint FAO/IAEA Division of Nuclear Techniques in Food and Agriculture embarked on a programme of support to scientists in developing countries focused on improving animal disease diagnosis through the use of nuclear and related technologies. As part of this programme the Swedish International Development Authority (SIDA) agreed to provide support for a FAO/IAEA Co-ordinated Research Project (CRP) concerned with the introduction and use of such technologies in Latin America. Through this programme, which was entitled Regional Network for Latin America on Animal Disease Diagnosis Using Immunoassays and Labeled DNA Probe Techniques, studies were supported on a number of diseases considered to be of substantial economic and social importance to the region, including brucellosis, tuberculosis, babesiosis, leukosis, bluetongue and chlamydia infection in cattle and psedorabies in pigs. One significant conclusion was that large number of diseases studied limited research findings owing to the lack of a critical mass of scientists studying any one specific disease problem. Thus when in 1991, SIDA agreed to follow-up CRP on Immunoassay Methods for the Diagnosis and Epidemiology of Animal Diseases in Latin America, the work was restricted to three diseases, i.e. foot-and-mouth disease (FMD), bovine brucellosis and bovine babesiosis. In 1994 results were presented in Guadeloupe, Lesser Antilles, France. The outcome of this meeting was the validation of ELISAs for the above mentioned diseases and a recommendation that future research should focus on diagnosis and epidemiology to support existing control and eradication campaigns against the two diseases of major importance in the region (FMD and Brucellosis). A follow-up CRP (1994-1997) entitled the Use of ELISA for Epidemiology and Control of Foot-and-Mouth Disease and Bovine Brucellosis in Latin America focused on the further validation and subsequent use of a

CO-Ordinated Action Design of Rheostatic and Air Brakes on the Electric Railcar Series 6 111

Directory of Open Access Journals (Sweden)

Josip Zavada

2012-10-01

Full Text Available The paper presents the solution for the modification of thebrakes on the electric railcar series 6111 used in suburban traffic.It also gives the results of the performed measurements aswell as their analysis.The mentioned electric railcar is fitted with air and rheostaticbrakes whose activation is mutually independent. Sincesuburban traffic means frequent slopping, and since the enginedriver does not use the rheostatic brake regularly, but only theair brake, the wear of the brake lining and wheels is higher, andthe heat load on the brake elements is substantial. By regularapplication of rheostatic brake, the air brake could be LLSed lessthus contributing to a lower wear of the friction elements.The presented solution for the modification of the brakeconsists of co-ordinated and automatic action of the rheostaticand air brake with every braking

Co-ordinated experimental research into PV power interaction with the supply network - Phase 1

Energy Technology Data Exchange (ETDEWEB)

Hacker, R.; Thornycroft, J.; Munro, D.; Rudkin, E.

1999-07-01

This report summarises the findings of a study examining the integration of photovoltaic systems into the UK electricity supply network. Details of research and development in the UK, and the participants in the research project are given. Information on photovoltaics as embedded generators, power conditioner design and performance, and the effects of photovoltaics on the network are outlined, and AC modules, standards, testing and approval schemes are considered. (UK)

A contribution to the study of plant development evolution based on gene co-expression networks

Directory of Open Access Journals (Sweden)

Francisco J. Romero-Campero

2013-08-01

Full Text Available Phototrophic eukaryotes are among the most successful organisms on Earth due to their unparalleled efficiency at capturing light energy and fixing carbon dioxide to produce organic molecules. A conserved and efficient network of light-dependent regulatory modules could be at the bases of this success. This regulatory system conferred early advantages to phototrophic eukaryotes that allowed for specialization, complex developmental processes and modern plant characteristics. We have studied light-dependent gene regulatory modules from algae to plants employing integrative-omics approaches based on gene co-expression networks. Our study reveals some remarkably conserved ways in which eukaryotic phototrophs deal with day length and light signaling. Here we describe how a family of Arabidopsis transcription factors involved in photoperiod response has evolved from a single algal gene according to the innovation, amplification and divergence theory of gene evolution by duplication. These modifications of the gene co-expression networks from the ancient unicellular green algae Chlamydomonas reinhardtii to the modern brassica Arabidopsis thaliana may hint on the evolution and specialization of plants and other organisms.

Hybrid modeling of the crosstalk between signaling and transcriptional networks using ordinary differential equations and multi-valued logic.

Science.gov (United States)

Khan, Faiz M; Schmitz, Ulf; Nikolov, Svetoslav; Engelmann, David; Pützer, Brigitte M; Wolkenhauer, Olaf; Vera, Julio

2014-01-01

A decade of successful results indicates that systems biology is the appropriate approach to investigate the regulation of complex biochemical networks involving transcriptional and post-transcriptional regulations. It becomes mandatory when dealing with highly interconnected biochemical networks, composed of hundreds of compounds, or when networks are enriched in non-linear motifs like feedback and feedforward loops. An emerging dilemma is to conciliate models of massive networks and the adequate description of non-linear dynamics in a suitable modeling framework. Boolean networks are an ideal representation of massive networks that are humble in terms of computational complexity and data demand. However, they are inappropriate when dealing with nested feedback/feedforward loops, structural motifs common in biochemical networks. On the other hand, models of ordinary differential equations (ODEs) cope well with these loops, but they require enormous amounts of quantitative data for a full characterization of the model. Here we propose hybrid models, composed of ODE and logical sub-modules, as a strategy to handle large scale, non-linear biochemical networks that include transcriptional and post-transcriptional regulations. We illustrate the construction of this kind of models using as example a regulatory network centered on E2F1, a transcription factor involved in cancer. The hybrid modeling approach proposed is a good compromise between quantitative/qualitative accuracy and scalability when considering large biochemical networks with a small highly interconnected core, and module of transcriptionally regulated genes that are not part of critical regulatory loops. This article is part of a Special Issue entitled: Computational Proteomics, Systems Biology & Clinical Implications. Guest Editor: Yudong Cai. Copyright © 2013 Elsevier B.V. All rights reserved.

Bonegilla Heritage Park: Contesting and Co-ordinating a Public History Site

Directory of Open Access Journals (Sweden)

Alexandra Dellios

2012-10-01

Full Text Available Since the 1980s, efforts to publically commemorate the former migrant training and reception centre of Bonegilla, while intermittent, have increased. I am referring to: reunions and anniversaries, state and national heritage listings, the erection of museum displays, temporary and touring exhibitions, the on-site Heritage Park, and forms of popular culture. For the national audience, as well as several ethnic communities, Bonegilla now plays a role in the collective imagination of the post-war period and the migrant journey. Furthermore, the nature of Bonegilla’s public representation has evolved since the late 1980s. Bonegilla has become much more than a place of personal migrant memory, and its previous negative connotations in the public arena have been erased. This public evolution is linked to much wider processes in our national history. This article thus explores the contestation and co-ordination of collective memories—that is, multiple narratives of Bonegilla’s past, which, while in constant dialogue with each other, are framed and sanctioned by the limits of Australian multiculturalism and heritage discourses. While the earliest efforts to commemorate Bonegilla might be typified as ‘participatory’ and vernacular, they might now be described in reference to ‘retrospective commemoration’, in which Bonegilla’s public history is framed by state-sanctioned narratives and other attendant discursive frameworks.

The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line

DEFF Research Database (Denmark)

Suzuki, Harukazu; Forrest, Alistair R R; van Nimwegen, Erik

2009-01-01

, we identified the key transcription regulators, their time-dependent activities and target genes. Systematic siRNA knockdown of 52 transcription factors confirmed the roles of individual factors in the regulatory network. Our results indicate that cellular states are constrained by complex networks......Using deep sequencing (deepCAGE), the FANTOM4 study measured the genome-wide dynamics of transcription-start-site usage in the human monocytic cell line THP-1 throughout a time course of growth arrest and differentiation. Modeling the expression dynamics in terms of predicted cis-regulatory sites...... involving both positive and negative regulatory interactions among substantial numbers of transcription factors and that no single transcription factor is both necessary and sufficient to drive the differentiation process....

Co-ordinate changes in enzymes of fatty acid synthesis, activation and esterification in rabbit mammary gland druing pregnancy and lactation.

Science.gov (United States)

Short, V J; Brindley, D N; Dils, R

1977-01-01

1. The activities of fatty acid synthetase, acyl-CoA synthetase, glycerol phosphate acyltransferase and phosphatidate phosphatase were measured in the mammary glands of rabbits from day 16 of pregnancy to day 15 of post partum. 2. There were significant correlations between the increases in activities of these enzymes during this period. This was the case whether the activities were expressed per mg of homogenate protein, per g wet wt. of tissue or per total wet weight of the whole glands. The only exception was the lack of correlation between the activities of fatty acid synthetase and of phosphatidate phosphatase per g wet wt. of tissue. 3. These co-ordinate increases are discussed in relation to the changes which occur in fatty acid metabolism in the mammary gland during pregnancy and lactation. PMID:192226

Co-ordination of the nuclear reaction data centers. Report on an IAEA advisory group meeting

International Nuclear Information System (INIS)

Schwerer, O.; Lemmel, H.D.

1996-11-01

This report summarizes the 1996 co-ordination meeting in Brookhaven, U.S.A., of the national and regional nuclear reaction data center, convened by the IAEA at regular intervals. The main topics are: the international exchange of nuclear reaction data by means of the ''EXFOR'' system, and the further development of this system; the ''CINDA'' system as an international index and bibliography to neutron reaction data; the sharing of the workload for speedy and reliable nuclear data compilation and data center services; the exchange and documentation of evaluated data libraries in ''ENDF'' format; the rapid advances of online electronic information technologies, with the goal of rendering data center services to data users in IAEA Member States by means of computer retrievals, online services and printed materials. The scope of data covers microscopic cross-sections and related parameters of nuclear reactions induced by neutrons, charged-particles and photons. (author). Refs, figs, tabs

Co-ordination of the nuclear reactions data centers. Report on an IAEA advisory group meeting

International Nuclear Information System (INIS)

Pronyaev, V.G.; Schwerer, O.

1998-07-01

This report summarizes the 1998 co-ordination meeting at the IAEA Headquarters in Vienna of the regional, national and specialized nuclear reaction data centers, concerned by the IAEA at two-year intervals. The main topics are: the international exchange of nuclear reaction data by means of the ''EXFOR'' system, and the further development of this system; the ''CINDA'' system as an international index and bibliography to neutron reaction data; the sharing of the workload for speedy and reliable nuclear data compilation and data center services; the exchange and documentation of evaluated data libraries in ''ENDF'' format; the rapid advances of online electronic information technologies, with goal of rendering data center services to data users in IAEA Member States by means of computer retrievals, online services and printed materials. The scope of data covers microscopic cross-sections and related parameters of nuclear reactions induced by neutrons, charged-particles and photons. (author)

Co-ordination of the nuclear reaction data centers. Report on an IAEA advisory group meeting

Energy Technology Data Exchange (ETDEWEB)

Schwerer, O; Lemmel, H D [eds.

1996-11-01

This report summarizes the 1996 co-ordination meeting in Brookhaven, U.S.A., of the national and regional nuclear reaction data center, convened by the IAEA at regular intervals. The main topics are: the international exchange of nuclear reaction data by means of the ``EXFOR`` system, and the further development of this system; the ``CINDA`` system as an international index and bibliography to neutron reaction data; the sharing of the workload for speedy and reliable nuclear data compilation and data center services; the exchange and documentation of evaluated data libraries in ``ENDF`` format; the rapid advances of online electronic information technologies, with the goal of rendering data center services to data users in IAEA Member States by means of computer retrievals, online services and printed materials. The scope of data covers microscopic cross-sections and related parameters of nuclear reactions induced by neutrons, charged-particles and photons. (author). Refs, figs, tabs.

Simulating Ordinal Data

Science.gov (United States)

Ferrari, Pier Alda; Barbiero, Alessandro

2012-01-01

The increasing use of ordinal variables in different fields has led to the introduction of new statistical methods for their analysis. The performance of these methods needs to be investigated under a number of experimental conditions. Procedures to simulate from ordinal variables are then required. In this article, we deal with simulation from…

A new high accuracy non-polynomial tension spline method for the solution of one dimensional wave equation in polar co-ordinates

Directory of Open Access Journals (Sweden)

Venu Gopal

2014-07-01

Full Text Available In this paper, we propose a new three-level implicit nine point compact finite difference formulation of O(k2 + h4 based on non-polynomial tension spline approximation in r-direction and finite difference approximation in t-direction for the numerical solution of one dimensional wave equation in polar co-ordinates. We describe the mathematical formulation procedure in details and also discuss the stability of the method. Numerical results are provided to justify the usefulness of the proposed method.

Improvement of measurements, theoretical computations and evaluations of neutron induced helium production cross sections. Summary report on the third and final research co-ordination meeting

International Nuclear Information System (INIS)

Pashchenko, A.B.

1996-09-01

The present report contains the Summary of the Third and Final IAEA Research Co-ordination Meeting (RCM) on ''Improvement of Measurements, Theoretical Computations and Evaluations of Neutron Induced Helium Production Cross Sections'' which was hosted by the Tohoku University and held in Sendai, Japan, from 25 to 29 September 1995. This RCM was organized by the IAEA Nuclear Data Section (NDS), with the co-operation and assistance of local organizers from Tohoku University. Summarized are the proceedings and results of the meeting. The List of Participants and meeting Agenda are included. (author)

Transcriptional dynamics of a conserved gene expression network associated with craniofacial divergence in Arctic charr.

Science.gov (United States)

Ahi, Ehsan Pashay; Kapralova, Kalina Hristova; Pálsson, Arnar; Maier, Valerie Helene; Gudbrandsson, Jóhannes; Snorrason, Sigurdur S; Jónsson, Zophonías O; Franzdóttir, Sigrídur Rut

2014-01-01

Understanding the molecular basis of craniofacial variation can provide insights into key developmental mechanisms of adaptive changes and their role in trophic divergence and speciation. Arctic charr (Salvelinus alpinus) is a polymorphic fish species, and, in Lake Thingvallavatn in Iceland, four sympatric morphs have evolved distinct craniofacial structures. We conducted a gene expression study on candidates from a conserved gene coexpression network, focusing on the development of craniofacial elements in embryos of two contrasting Arctic charr morphotypes (benthic and limnetic). Four Arctic charr morphs were studied: one limnetic and two benthic morphs from Lake Thingvallavatn and a limnetic reference aquaculture morph. The presence of morphological differences at developmental stages before the onset of feeding was verified by morphometric analysis. Following up on our previous findings that Mmp2 and Sparc were differentially expressed between morphotypes, we identified a network of genes with conserved coexpression across diverse vertebrate species. A comparative expression study of candidates from this network in developing heads of the four Arctic charr morphs verified the coexpression relationship of these genes and revealed distinct transcriptional dynamics strongly correlated with contrasting craniofacial morphologies (benthic versus limnetic). A literature review and Gene Ontology analysis indicated that a significant proportion of the network genes play a role in extracellular matrix organization and skeletogenesis, and motif enrichment analysis of conserved noncoding regions of network candidates predicted a handful of transcription factors, including Ap1 and Ets2, as potential regulators of the gene network. The expression of Ets2 itself was also found to associate with network gene expression. Genes linked to glucocorticoid signalling were also studied, as both Mmp2 and Sparc are responsive to this pathway. Among those, several transcriptional

Integrated pathway-based transcription regulation network mining and visualization based on gene expression profiles.

Science.gov (United States)

Kibinge, Nelson; Ono, Naoaki; Horie, Masafumi; Sato, Tetsuo; Sugiura, Tadao; Altaf-Ul-Amin, Md; Saito, Akira; Kanaya, Shigehiko

2016-06-01

Conventionally, workflows examining transcription regulation networks from gene expression data involve distinct analytical steps. There is a need for pipelines that unify data mining and inference deduction into a singular framework to enhance interpretation and hypotheses generation. We propose a workflow that merges network construction with gene expression data mining focusing on regulation processes in the context of transcription factor driven gene regulation. The pipeline implements pathway-based modularization of expression profiles into functional units to improve biological interpretation. The integrated workflow was implemented as a web application software (TransReguloNet) with functions that enable pathway visualization and comparison of transcription factor activity between sample conditions defined in the experimental design. The pipeline merges differential expression, network construction, pathway-based abstraction, clustering and visualization. The framework was applied in analysis of actual expression datasets related to lung, breast and prostrate cancer. Copyright © 2016 Elsevier Inc. All rights reserved.

Transcriptional profiling uncovers a network of cholesterol-responsive atherosclerosis target genes.

Directory of Open Access Journals (Sweden)

Josefin Skogsberg

2008-03-01

Full Text Available Despite the well-documented effects of plasma lipid lowering regimes halting atherosclerosis lesion development and reducing morbidity and mortality of coronary artery disease and stroke, the transcriptional response in the atherosclerotic lesion mediating these beneficial effects has not yet been carefully investigated. We performed transcriptional profiling at 10-week intervals in atherosclerosis-prone mice with human-like hypercholesterolemia and a genetic switch to lower plasma lipoproteins (Ldlr(-/-Apo(100/100Mttp(flox/flox Mx1-Cre. Atherosclerotic lesions progressed slowly at first, then expanded rapidly, and plateaued after advanced lesions formed. Analysis of lesion expression profiles indicated that accumulation of lipid-poor macrophages reached a point that led to the rapid expansion phase with accelerated foam-cell formation and inflammation, an interpretation supported by lesion histology. Genetic lowering of plasma cholesterol (e.g., lipoproteins at this point all together prevented the formation of advanced plaques and parallel transcriptional profiling of the atherosclerotic arterial wall identified 37 cholesterol-responsive genes mediating this effect. Validation by siRNA-inhibition in macrophages incubated with acetylated-LDL revealed a network of eight cholesterol-responsive atherosclerosis genes regulating cholesterol-ester accumulation. Taken together, we have identified a network of atherosclerosis genes that in response to plasma cholesterol-lowering prevents the formation of advanced plaques. This network should be of interest for the development of novel atherosclerosis therapies.

The test-retest reliability of anatomical co-ordinate axes definition for the quantification of lower extremity kinematics during running.

Science.gov (United States)

Sinclair, Jonathan; Taylor, Paul John; Greenhalgh, Andrew; Edmundson, Christopher James; Brooks, Darrell; Hobbs, Sarah Jane

2012-12-01

Three-dimensional (3-D) kinematic analyses are used widely in both sport and clinical examinations. However, this procedure depends on reliable palpation of anatomical landmarks and mal-positioning of markers between sessions may result in improperly defined segment co-ordinate system axes which will produce in-consistent joint rotations. This had led some to question the efficacy of this technique. The aim of the current investigation was to assess the reliability of the anatomical frame definition when quantifying 3-D kinematics of the lower extremities during running. Ten participants completed five successful running trials at 4.0 m·s(-1) ± 5%. 3-D angular joint kinematics parameters from the hip, knee and ankle were collected using an eight camera motion analysis system. Two static calibration trials were captured. The first (test) was conducted prior to the running trials following which anatomical landmarks were removed. The second was obtained following completion of the running trials where anatomical landmarks were re-positioned (retest). Paired samples t-tests were used to compare 3-D kinematic parameters quantified using the two static trials, and intraclass correlations were employed to examine the similarities between the sagittal, coronal and transverse plane waveforms. The results indicate that no significant (p>0.05) differences were found between test and retest 3-D kinematic parameters and strong (R(2)≥0.87) correlations were observed between test and retest waveforms. Based on the results obtained from this investigation, it appears that the anatomical co-ordinate axes of the lower extremities can be defined reliably thus confirming the efficacy of studies using this technique.

Intercomparison for individual monitoring of external exposure from photon radiation. Results of a co-ordinated research project 1996-1998

International Nuclear Information System (INIS)

1999-12-01

This TECDOC presents the results of a Co-ordinated Research Project on Intercomparison for Individual Monitoring of External Exposure from photon radiation. The International Basic Safety Standards for Protection against Ionizing Radiation and for the Safety of Radiation Sources (BSS) have endorsed the use of the operational quantities for monitoring purposes. Specifically, personal dose equivalent, H p (d), is to be used for individual dosimetry to demonstrate compliance with the exposure limit recommendations, while for workplace area monitoring the ambient dose equivalent and the directional dose equivalent are recommended. In view of the technical difficulties associated with the introduction of these operational quantities the IAEA decided to assist Member States in their provision of appropriate dosimetry for occupational protection. In this respect, intercomparisons have proven to be a cost effective method of providing such support. A Co-ordinated Research Project (CRP) was started in 1997 on Intercomparison for Individual Monitoring of External Exposure from photon radiation, involving more than twenty laboratories from eastern Europe and the countries of the former Soviet Union, and focusing on personnel dosimetry services for nuclear power plants. This CRP was part of the activities of the IAEA Occupational Protection Programme, the objective4s of which are to promote and internationally harmonized approach for optimizing occupational radiation protection through: the development of guides, within the IAEA activities for establishing standards for radiation protection, for restricting radiation exposures in the workplace and for applying current occupational radiation protection techniques, and the promotion of the application of these guidelines. The preparatory phase included, in May 1997, a workshop aimed at familiarizing the participants with the new operational quantities

Uncovering Transcriptional Regulatory Networks by Sparse Bayesian Factor Model

Directory of Open Access Journals (Sweden)

Qi Yuan(Alan

2010-01-01

Full Text Available Abstract The problem of uncovering transcriptional regulation by transcription factors (TFs based on microarray data is considered. A novel Bayesian sparse correlated rectified factor model (BSCRFM is proposed that models the unknown TF protein level activity, the correlated regulations between TFs, and the sparse nature of TF-regulated genes. The model admits prior knowledge from existing database regarding TF-regulated target genes based on a sparse prior and through a developed Gibbs sampling algorithm, a context-specific transcriptional regulatory network specific to the experimental condition of the microarray data can be obtained. The proposed model and the Gibbs sampling algorithm were evaluated on the simulated systems, and results demonstrated the validity and effectiveness of the proposed approach. The proposed model was then applied to the breast cancer microarray data of patients with Estrogen Receptor positive ( status and Estrogen Receptor negative ( status, respectively.

Regulatory cross-talks and cascades in rice hormone biosynthesis pathways contribute to stress signaling

Directory of Open Access Journals (Sweden)

Arindam Deb

2016-08-01

Full Text Available Crosstalk among different hormone signaling pathways play an important role in modulating plant response to both biotic and abiotic stress. Hormone activity is controlled by its bio-availability, which is again influenced by its biosynthesis. Thus independent hormone biosynthesis pathways must be regulated and co-ordinated to mount an integrated response. One of the possibilities is to use cis-regulatory elements to orchestrate expression of hormone biosynthesis genes. Analysis of CREs, associated with differentially expressed hormone biosynthesis related genes in rice leaf under Magnaporthe oryzae attack and drought stress enabled us to obtain insights about cross-talk among hormone biosynthesis pathways at the transcriptional level. We identified some master transcription regulators that co-ordinate different hormone biosynthesis pathways under stress. We found that Abscisic acid and Brassinosteroid regulate Cytokinin conjugation; conversely Brassinosteroid biosynthesis is affected by both Abscisic acid and Cytokinin. Jasmonic acid and Ethylene biosynthesis may be modulated by Abscisic acid through DREB transcription factors. Jasmonic acid or Salicylic acid biosynthesis pathways are co-regulated but they are unlikely to influence each other’s production directly. Thus multiple hormones may modulate hormone biosynthesis pathways through a complex regulatory network, where biosynthesis of one hormone is affected by several other contributing hormones.

Review of methodologies for analysis of safety incidents at NPPs. Final report of a co-ordinated research project 1998-2001

International Nuclear Information System (INIS)

2002-03-01

The safe operation of nuclear power plants around the world and the prevention of incidents in these installations remain key concerns for the nuclear community. In this connection, the feedback of operating experience plays a major role: every nuclear power plant or nuclear utility needs to have a system in place for collecting information on unusual events, whether these are incidents or merely deviations from normal operation. Reporting to the regulatory body of important events and lessons learned is normally carried out through the national reporting schemes based on regulatory reporting requirements. The most important lessons learned are further shared internationally, through, for example, the Joint IAEA/NEA Incident Reporting System (IRS) or the event information exchange of the World Association of Nuclear Operators (WANO). In order to properly assess the event, an adequate event investigation methodology has to be applied, which leads to the identification of correct root causes. Once these root causes have been ascertained, appropriate corrective actions can be established and corresponding lessons can be drawn. The overall goal of root cause analysis is the prevention of events or their recurrence and thus the overall improvement in plant safety. In 1998, the IAEA established a co-ordinated research project with the objective of exploring root cause methodologies and techniques currently in use in Member States, evaluating their strengths and limitations and developing criteria for appropriate event investigation methodologies. This report is the outcome of four years of co-ordinated research which involved 15 national and international research organizations

Inferring transcriptional gene regulation network of starch metabolism in Arabidopsis thaliana leaves using graphical Gaussian model

Directory of Open Access Journals (Sweden)

Ingkasuwan Papapit

2012-08-01

Full Text Available Abstract Background Starch serves as a temporal storage of carbohydrates in plant leaves during day/night cycles. To study transcriptional regulatory modules of this dynamic metabolic process, we conducted gene regulation network analysis based on small-sample inference of graphical Gaussian model (GGM. Results Time-series significant analysis was applied for Arabidopsis leaf transcriptome data to obtain a set of genes that are highly regulated under a diurnal cycle. A total of 1,480 diurnally regulated genes included 21 starch metabolic enzymes, 6 clock-associated genes, and 106 transcription factors (TF. A starch-clock-TF gene regulation network comprising 117 nodes and 266 edges was constructed by GGM from these 133 significant genes that are potentially related to the diurnal control of starch metabolism. From this network, we found that β-amylase 3 (b-amy3: At4g17090, which participates in starch degradation in chloroplast, is the most frequently connected gene (a hub gene. The robustness of gene-to-gene regulatory network was further analyzed by TF binding site prediction and by evaluating global co-expression of TFs and target starch metabolic enzymes. As a result, two TFs, indeterminate domain 5 (AtIDD5: At2g02070 and constans-like (COL: At2g21320, were identified as positive regulators of starch synthase 4 (SS4: At4g18240. The inference model of AtIDD5-dependent positive regulation of SS4 gene expression was experimentally supported by decreased SS4 mRNA accumulation in Atidd5 mutant plants during the light period of both short and long day conditions. COL was also shown to positively control SS4 mRNA accumulation. Furthermore, the knockout of AtIDD5 and COL led to deformation of chloroplast and its contained starch granules. This deformity also affected the number of starch granules per chloroplast, which increased significantly in both knockout mutant lines. Conclusions In this study, we utilized a systematic approach of microarray

Social Network: a Cytoscape app for visualizing co-authorship networks.

Science.gov (United States)

Kofia, Victor; Isserlin, Ruth; Buchan, Alison M J; Bader, Gary D

2015-01-01

Networks that represent connections between individuals can be valuable analytic tools. The Social Network Cytoscape app is capable of creating a visual summary of connected individuals automatically. It does this by representing relationships as networks where each node denotes an individual and an edge linking two individuals represents a connection. The app focuses on creating visual summaries of individuals connected by co-authorship links in academia, created from bibliographic databases like PubMed, Scopus and InCites. The resulting co-authorship networks can be visualized and analyzed to better understand collaborative research networks or to communicate the extent of collaboration and publication productivity among a group of researchers, like in a grant application or departmental review report. It can also be useful as a research tool to identify important research topics, researchers and papers in a subject area.

Use of mutation techniques for improvement of cereals in Latin America. Final reports of a co-ordinated research programme

Energy Technology Data Exchange (ETDEWEB)

NONE

1996-01-01

This publication presents the scientific results obtained under the FAO/IAEA Co-ordinated Research Programme on Improvement of Cereals in Latin America through Mutation Breeding. Some of the selected mutants were already tested in multilocation trials and had higher yields and/or other advantages, in comparison with the leading local varieties. On the basis of these results it it expected that a few new mutant varieties of rice (Brazil, Costa Rica, Cuba, Guatemala), wheat (Brazil, Chile) and barley (Peru) will be officially released within the next few years. Still more mutants, which are valuable for conventional breeding programmes as new sources of desired genes, were selected. Refs, figs and tabs.

A network of paralogous stress response transcription factors in the human pathogen Candida glabrata.

Directory of Open Access Journals (Sweden)

Jawad eMerhej

2016-05-01

Full Text Available The yeast Candida glabrata has become the second cause of systemic candidemia in humans. However, relatively few genome-wide studies have been conducted in this organism and our knowledge of its transcriptional regulatory network is quite limited. In the present work, we combined genome-wide chromatin immunoprecipitation (ChIP-seq, transcriptome analyses and DNA binding motif predictions to describe the regulatory interactions of the seven Yap (Yeast AP1 transcription factors of C. glabrata. We described a transcriptional network containing 255 regulatory interactions and 309 potential target genes. We predicted with high confidence the preferred DNA binding sites for 5 of the 7 CgYaps and showed a strong conservation of the Yap DNA binding properties between S. cerevisiae and C. glabrata. We provided reliable functional annotation for 3 of the 7 Yaps and identified for Yap1 and Yap5 a core regulon which is conserved in S. cerevisiae, C. glabrata and C. albicans. We uncovered new roles for CgYap7 in the regulation of iron-sulfur cluster biogenesis, for CgYap1 in the regulation of heme biosynthesis and for CgYap5 in the repression of GRX4 in response to iron starvation. These transcription factors define an interconnected transcriptional network at the cross-roads between redox homeostasis, oxygen consumption and iron metabolism.

Atomic Energy Act and ordinances. 8. ed.

International Nuclear Information System (INIS)

Anon.

1978-01-01

The new issue of the text contains the Atomic Energy Act (AtG) in its new wording of the announcement of 31 Oct 76, the new wording of the ordinances put in effect in 1977: Atomic procedure ordinance (AtVfV), radiation protection ordinance (SSU), and atomic financial security ordinance (AtDeckV); furthermore the x-ray ordinance (RoeV) of 1978 in its wording which has been changed by the radiation protection ordinance. Also printed are the cost ordinance (AtKostV) of 1971, the food irradiation ordinance (LebensmBestrV) in the wording of 1975 and the medicine ordinance (ArzneimV) in the wording of 1971. An addition was made by adding to the liability laws the Paris agreement (PUE) on the liability towards third persons in the field of nuclear energy in the wording of the announcement of 5 Feb 76. (orig./HP) [de

Integrative analysis of many weighted co-expression networks using tensor computation.

Directory of Open Access Journals (Sweden)

Wenyuan Li

2011-06-01

Full Text Available The rapid accumulation of biological networks poses new challenges and calls for powerful integrative analysis tools. Most existing methods capable of simultaneously analyzing a large number of networks were primarily designed for unweighted networks, and cannot easily be extended to weighted networks. However, it is known that transforming weighted into unweighted networks by dichotomizing the edges of weighted networks with a threshold generally leads to information loss. We have developed a novel, tensor-based computational framework for mining recurrent heavy subgraphs in a large set of massive weighted networks. Specifically, we formulate the recurrent heavy subgraph identification problem as a heavy 3D subtensor discovery problem with sparse constraints. We describe an effective approach to solving this problem by designing a multi-stage, convex relaxation protocol, and a non-uniform edge sampling technique. We applied our method to 130 co-expression networks, and identified 11,394 recurrent heavy subgraphs, grouped into 2,810 families. We demonstrated that the identified subgraphs represent meaningful biological modules by validating against a large set of compiled biological knowledge bases. We also showed that the likelihood for a heavy subgraph to be meaningful increases significantly with its recurrence in multiple networks, highlighting the importance of the integrative approach to biological network analysis. Moreover, our approach based on weighted graphs detects many patterns that would be overlooked using unweighted graphs. In addition, we identified a large number of modules that occur predominately under specific phenotypes. This analysis resulted in a genome-wide mapping of gene network modules onto the phenome. Finally, by comparing module activities across many datasets, we discovered high-order dynamic cooperativeness in protein complex networks and transcriptional regulatory networks.

Analysis of the dynamic co-expression network of heart regeneration in the zebrafish

Science.gov (United States)

Rodius, Sophie; Androsova, Ganna; Götz, Lou; Liechti, Robin; Crespo, Isaac; Merz, Susanne; Nazarov, Petr V.; de Klein, Niek; Jeanty, Céline; González-Rosa, Juan M.; Muller, Arnaud; Bernardin, Francois; Niclou, Simone P.; Vallar, Laurent; Mercader, Nadia; Ibberson, Mark; Xenarios, Ioannis; Azuaje, Francisco

2016-05-01

The zebrafish has the capacity to regenerate its heart after severe injury. While the function of a few genes during this process has been studied, we are far from fully understanding how genes interact to coordinate heart regeneration. To enable systematic insights into this phenomenon, we generated and integrated a dynamic co-expression network of heart regeneration in the zebrafish and linked systems-level properties to the underlying molecular events. Across multiple post-injury time points, the network displays topological attributes of biological relevance. We show that regeneration steps are mediated by modules of transcriptionally coordinated genes, and by genes acting as network hubs. We also established direct associations between hubs and validated drivers of heart regeneration with murine and human orthologs. The resulting models and interactive analysis tools are available at http://infused.vital-it.ch. Using a worked example, we demonstrate the usefulness of this unique open resource for hypothesis generation and in silico screening for genes involved in heart regeneration.

Co-ordination of the nuclear reactions data centers. Report on an IAEA advisory group meeting

Energy Technology Data Exchange (ETDEWEB)

Pronyaev, V G; Schwerer, O [eds.

1998-07-01

This report summarizes the 1998 co-ordination meeting at the IAEA Headquarters in Vienna of the regional, national and specialized nuclear reaction data centers, concerned by the IAEA at two-year intervals. The main topics are: the international exchange of nuclear reaction data by means of the ``EXFOR`` system, and the further development of this system; the ``CINDA`` system as an international index and bibliography to neutron reaction data; the sharing of the workload for speedy and reliable nuclear data compilation and data center services; the exchange and documentation of evaluated data libraries in ``ENDF`` format; the rapid advances of online electronic information technologies, with goal of rendering data center services to data users in IAEA Member States by means of computer retrievals, online services and printed materials. The scope of data covers microscopic cross-sections and related parameters of nuclear reactions induced by neutrons, charged-particles and photons. (author) Refs, figs, tabs

ChIPBase v2.0: decoding transcriptional regulatory networks of non-coding RNAs and protein-coding genes from ChIP-seq data.

Science.gov (United States)

Zhou, Ke-Ren; Liu, Shun; Sun, Wen-Ju; Zheng, Ling-Ling; Zhou, Hui; Yang, Jian-Hua; Qu, Liang-Hu

2017-01-04

The abnormal transcriptional regulation of non-coding RNAs (ncRNAs) and protein-coding genes (PCGs) is contributed to various biological processes and linked with human diseases, but the underlying mechanisms remain elusive. In this study, we developed ChIPBase v2.0 (http://rna.sysu.edu.cn/chipbase/) to explore the transcriptional regulatory networks of ncRNAs and PCGs. ChIPBase v2.0 has been expanded with ∼10 200 curated ChIP-seq datasets, which represent about 20 times expansion when comparing to the previous released version. We identified thousands of binding motif matrices and their binding sites from ChIP-seq data of DNA-binding proteins and predicted millions of transcriptional regulatory relationships between transcription factors (TFs) and genes. We constructed 'Regulator' module to predict hundreds of TFs and histone modifications that were involved in or affected transcription of ncRNAs and PCGs. Moreover, we built a web-based tool, Co-Expression, to explore the co-expression patterns between DNA-binding proteins and various types of genes by integrating the gene expression profiles of ∼10 000 tumor samples and ∼9100 normal tissues and cell lines. ChIPBase also provides a ChIP-Function tool and a genome browser to predict functions of diverse genes and visualize various ChIP-seq data. This study will greatly expand our understanding of the transcriptional regulations of ncRNAs and PCGs. © The Author(s) 2016. Published by Oxford University Press on behalf of Nucleic Acids Research.

ENIQ: European Network for Inspection Qualification: Status report

International Nuclear Information System (INIS)

Champigny, F.; Sandberg, U.; Crutzen, S.; Lemaitre, P.

1998-01-01

The European Network for Inspection Qualification (ENIQ) groups the major part of the nuclear power plant operators in the European Union (and Switzerland). The main objective of ENIQ is to co-ordinate and manage at European level expertise and resources for the qualification of NDE inspection systems, primarily for nuclear components. In this paper the main activities, organisation and actual status of ENIQ are discussed. (author)

Second research co-ordination meeting for the coordinated research project on 'Application of nuclear techniques in the prevention of degenerative diseases (obesity and non-insulin dependent diseases) in ageing'. Summary report

International Nuclear Information System (INIS)

Iyengar, G.V.; Mokhtar, N.

2002-01-01

In the developed countries, research using nuclear methods has been substantially used to examine the physiological and biochemical mechanisms involved in obesity-related diseases. This Co-ordinated Research Project (CRP) is intended to promote the use of these techniques in the developing world. The specific objectives of this CRP are: 1. To define the magnitude of the obesity/NIDDM problem in developing countries. 2. To identify vulnerable groups at high risk. 3. To describe the metabolic mechanisms involved. The purpose of this first Research Co-ordination Meeting (RCM) was thus to develop a worldwide collaboration in the use of nuclear and isotopic techniques to investigate the aetiology of degenerative diseases in ageing. All countries participating in this CRP are going through the epidemiological transition with changes in lifestyles to approach those seen in the developed nations

IAEA-RCA Co-ordinated Research Program on Reference Asian Man

International Nuclear Information System (INIS)

Koyanagi, Taku

1990-01-01

The Research Coordination Meeting was held in Mito City, Japan on October 17-21, 1988, inviting the chief investigating scientists from 11 RCA member countries to discuss practical plans for the Coordinated Research Program (CRP) on 'Compilation of Anatomical, Physiological and Metabolic Characteristics for a Reference Asian Man' based on the decision taken at the Project Formulation Meeting for the RCA Project 'Strengthening Radiation Protection' Tokyo, November 1987. Significance of the setting 'Reference Man' for Asian peoples to estimate more realistic radiation doses by applying the real typical physical, physiological and metabolic parameters for them instead of those recommended by ICRP based on the data for 'Caucasian Man' has been indicated by whole member countries and recognized again at the Meeting. The present status of 'Reference Man-oriented Studies' in each countries was presented by the participants and certain difference or difficulties were pointed out among the countries depending on the geographical, social, or economical conditions as well as the ethnic circumstances. After the mutual discussions and exchange of up-to-date information, the general conclusions were drawn as follows: acknowledging the importance of the CRP, research works should be carried out in each country with the expected supports from IAEA and other member countries. The first priority is given on the measurements of human physique (and internal organs) followed by the food consumption survey. Trace element analysis would be done by the countries where possible. The standard manual for data collection might be necessary. The establishments of Co-ordination Center or central body with data base and also subgroup systems are desirable to promote the CRP. (author)

Dissecting the expression relationships between RNA-binding proteins and their cognate targets in eukaryotic post-transcriptional regulatory networks

Science.gov (United States)

Nishtala, Sneha; Neelamraju, Yaseswini; Janga, Sarath Chandra

2016-05-01

RNA-binding proteins (RBPs) are pivotal in orchestrating several steps in the metabolism of RNA in eukaryotes thereby controlling an extensive network of RBP-RNA interactions. Here, we employed CLIP (cross-linking immunoprecipitation)-seq datasets for 60 human RBPs and RIP-ChIP (RNP immunoprecipitation-microarray) data for 69 yeast RBPs to construct a network of genome-wide RBP- target RNA interactions for each RBP. We show in humans that majority (~78%) of the RBPs are strongly associated with their target transcripts at transcript level while ~95% of the studied RBPs were also found to be strongly associated with expression levels of target transcripts when protein expression levels of RBPs were employed. At transcript level, RBP - RNA interaction data for the yeast genome, exhibited a strong association for 63% of the RBPs, confirming the association to be conserved across large phylogenetic distances. Analysis to uncover the features contributing to these associations revealed the number of target transcripts and length of the selected protein-coding transcript of an RBP at the transcript level while intensity of the CLIP signal, number of RNA-Binding domains, location of the binding site on the transcript, to be significant at the protein level. Our analysis will contribute to improved modelling and prediction of post-transcriptional networks.

Acute and long-term nutrient-led modifications of gene expression: potential role of SIRT1 as a central co-ordinator of short and longer-term programming of tissue function.

Science.gov (United States)

Holness, Mark J; Caton, Paul W; Sugden, Mary C

2010-05-01

Environmental factors can influence the acute and longer-term risks of developing diseases, including type 2 diabetes mellitus and cardiovascular disease; however, the underlying mechanism remains elusive. Increasing evidence suggests that these effects can be achieved by modification of metabolic gene expression. These include acute changes in histone methylation, acetylation, phosphorylation, and ubiquitination and longer-term DNA silencing elicited by DNA methylation. Thus, an increased risk of disease may reflect acute or chronic stable modification of genes that regulate nutrient handling, leading to altered nutrient utilization (increased lipid oxidation at the expense of glucose utilization) and/or changes in the balance between nutrient storage and energy production, thereby favoring the development of obesity. The review addresses the hypothesis that early-life epigenetic programming of gene expression could be mirrored by changes in acute function of nuclear receptors, in particular the peroxisome proliferator-activated receptors, achieved by enzymes that are more conventionally involved in regulating DNA methylation and post-transcriptional modification of histones. Emphasis is placed on the potential importance of the protein deacetylase sirtuin-1 as a central co-ordinator. Copyright 2010 Elsevier Inc. All rights reserved.

Radiation processing for safe, shelf-stable and ready-to-eat food. Proceedings of a final research co-ordination meeting

International Nuclear Information System (INIS)

2003-01-01

The increasingly busy lifestyles of populations in many countries have driven the demand for safe, convenient and ready-to-eat food. Traditional food processes such as drying, canning or refrigeration offer a partial solution to this demand as the sensory quality of such food may be significantly affected or the products may be contaminated by pathogenic bacteria during preparation. For developing countries, safe shelf-stable food without the need for refrigeration would offer advantages. In addition, the increasing number of immuno-compromised populations in many countries requires a new approach to food safety to meet their needs. Irradiation offers a potential to enhance microbiological safety and quality of food through shelf-life extension. The benefits of irradiation as a sanitary treatment of many types of food are well known, some of which are applied commercially in several countries. Little data were available, however, on the effect of irradiation on minimally processed food and composite food including prepared meals. A Co-ordinated Research Project (CRP) on the Development of Safe, Shelf-Stable and Ready-to-Eat Food through Radiation Processing therefore was implemented by the Joint FAO/IAEA Division of Nuclear Techniques in Food and Agriculture in 1996 to evaluate the role of irradiation for such food. The results were encouraging as irradiation offers promise as a sanitary treatment to ensure microbiological safety and shelf-life extension of several types of food products including pre-cut vegetables and some sous-vide meals, chilled ready-prepared meals, chilled ready-to-eat meat products, food for immuno-compromised patients/populations, sterile meals, ready-to-eat-food of intermediate moisture content. This publication presents the research results reported at the final Research Co-ordination meeting on this CRP held in Saint Hyacinthe, Quebec, Canada, 10-14 July 2000

Radiation processing for safe, shelf-stable and ready-to-eat food. Proceedings of a final research co-ordination meeting

Energy Technology Data Exchange (ETDEWEB)

NONE

2003-01-01

The increasingly busy lifestyles of populations in many countries have driven the demand for safe, convenient and ready-to-eat food. Traditional food processes such as drying, canning or refrigeration offer a partial solution to this demand as the sensory quality of such food may be significantly affected or the products may be contaminated by pathogenic bacteria during preparation. For developing countries, safe shelf-stable food without the need for refrigeration would offer advantages. In addition, the increasing number of immuno-compromised populations in many countries requires a new approach to food safety to meet their needs. Irradiation offers a potential to enhance microbiological safety and quality of food through shelf-life extension. The benefits of irradiation as a sanitary treatment of many types of food are well known, some of which are applied commercially in several countries. Little data were available, however, on the effect of irradiation on minimally processed food and composite food including prepared meals. A Co-ordinated Research Project (CRP) on the Development of Safe, Shelf-Stable and Ready-to-Eat Food through Radiation Processing therefore was implemented by the Joint FAO/IAEA Division of Nuclear Techniques in Food and Agriculture in 1996 to evaluate the role of irradiation for such food. The results were encouraging as irradiation offers promise as a sanitary treatment to ensure microbiological safety and shelf-life extension of several types of food products including pre-cut vegetables and some sous-vide meals, chilled ready-prepared meals, chilled ready-to-eat meat products, food for immuno-compromised patients/populations, sterile meals, ready-to-eat-food of intermediate moisture content. This publication presents the research results reported at the final Research Co-ordination meeting on this CRP held in Saint Hyacinthe, Quebec, Canada, 10-14 July 2000.

In vitro techniques for selection of radiation induced mutations adapted to adverse environmental conditions. Proceedings of a final research co-ordination meeting

International Nuclear Information System (INIS)

2001-06-01

The ever increasing human population and dwindling land and water resources worldwide make it essential to produce more food, fibre and fodder from less and less land. During the last century, plant breeding contributed remarkably to increasing food by producing varieties which give higher yield, have improved quality and nutrition, and resist diseases and pests. Nearly 50% of the increase in food production in Asia during the last fifty years can be attributed to the high yielding, short height varieties of rice and wheat, the remaining to the improved agronomic inputs and management. Many crops, such as cassava, potato, pineapple, sweet potato, sugarcane, banana and plantain are major food crops, and others such as sugarcane and pineapple are important to the economies of many developing countries. One of the solutions to have a sustainable and secure food production is to breed varieties which are tolerant of stress conditions during their growth and development. Hence a Co-ordinated Research Project on In vitro Techniques for Selection of Radiation Induced Mutations Adapted to Adverse Environmental Conditions was initiated and focused primarily on the improvement of vegetatively propagated plants. Since the inception of this project, several participating scientists established the optimal dose requirement for in vitro cultured material. Investigations were carried out on the effect of radiation to alter traits which affect survival under stress conditions and high temperature stress in potato, pineapple, sweet potato and garlic. The possibility to change traits such as tolerance to saline and water logged soils in sugarcane and gene regulation for salinity tolerance were studied. The limited number of available reports suggest that callus cultures are much more sensitive to radiation treatment and require much lower doses (2 to 5 Gy) than stem cuttings or seeds, and that relatively higher doses (15 to 20 Gy) cause necrosis or loss of regenerative capacity. The

In vitro techniques for selection of radiation induced mutations adapted to adverse environmental conditions. Proceedings of a final research co-ordination meeting

Energy Technology Data Exchange (ETDEWEB)

NONE

2001-06-01

The ever increasing human population and dwindling land and water resources worldwide make it essential to produce more food, fibre and fodder from less and less land. During the last century, plant breeding contributed remarkably to increasing food by producing varieties which give higher yield, have improved quality and nutrition, and resist diseases and pests. Nearly 50% of the increase in food production in Asia during the last fifty years can be attributed to the high yielding, short height varieties of rice and wheat, the remaining to the improved agronomic inputs and management. Many crops, such as cassava, potato, pineapple, sweet potato, sugarcane, banana and plantain are major food crops, and others such as sugarcane and pineapple are important to the economies of many developing countries. One of the solutions to have a sustainable and secure food production is to breed varieties which are tolerant of stress conditions during their growth and development. Hence a Co-ordinated Research Project on In vitro Techniques for Selection of Radiation Induced Mutations Adapted to Adverse Environmental Conditions was initiated and focused primarily on the improvement of vegetatively propagated plants. Since the inception of this project, several participating scientists established the optimal dose requirement for in vitro cultured material. Investigations were carried out on the effect of radiation to alter traits which affect survival under stress conditions and high temperature stress in potato, pineapple, sweet potato and garlic. The possibility to change traits such as tolerance to saline and water logged soils in sugarcane and gene regulation for salinity tolerance were studied. The limited number of available reports suggest that callus cultures are much more sensitive to radiation treatment and require much lower doses (2 to 5 Gy) than stem cuttings or seeds, and that relatively higher doses (15 to 20 Gy) cause necrosis or loss of regenerative capacity. The

Characterization of ceramics and semiconductors using nuclear techniques. Final report of a co-ordinated research project

Energy Technology Data Exchange (ETDEWEB)

NONE

1999-03-01

With the aim of promoting research and facilitating more extensive application of nuclear techniques for material development, the IAEA established in 1994 a Co-ordinated Research Project (CRP) on Characterization of Ceramics and Semiconductors using Nuclear Techniques. This publication reviews and summarizes recent developments in this field and includes an assessment of the current status and trends in nuclear techniques in characterization of inorganic materials of technological importance. The TECDOC presents new achievements on ceramic superconductor behaviour under neutron induced defects, optimization of structure of mineral gels,m low temperature preparation of fine particles of ferrites, crystal luminescence of ceramic composites with improved plastic properties, thin film defects and detoxification of asbestos. The investigation of chemical composition, phase transitions and magnetic properties of ferrites by Moessbauer spectroscopy is largely developed. The document includes 18 individual contributions, each of them has been indexed and provided with an abstract Refs, figs, tabs

Characterization of ceramics and semiconductors using nuclear techniques. Final report of a co-ordinated research project

International Nuclear Information System (INIS)

1999-03-01

With the aim of promoting research and facilitating more extensive application of nuclear techniques for material development, the IAEA established in 1994 a Co-ordinated Research Project (CRP) on Characterization of Ceramics and Semiconductors using Nuclear Techniques. This publication reviews and summarizes recent developments in this field and includes an assessment of the current status and trends in nuclear techniques in characterization of inorganic materials of technological importance. The TECDOC presents new achievements on ceramic superconductor behaviour under neutron induced defects, optimization of structure of mineral gels,m low temperature preparation of fine particles of ferrites, crystal luminescence of ceramic composites with improved plastic properties, thin film defects and detoxification of asbestos. The investigation of chemical composition, phase transitions and magnetic properties of ferrites by Moessbauer spectroscopy is largely developed. The document includes 18 individual contributions, each of them has been indexed and provided with an abstract

Co-ordination of satellite and data programs: The committee on earth observation satellites' approach

Science.gov (United States)

Embleton, B. J. J.; Kingwell, J.

1997-01-01

Every year, an average of eight new civilian remote sensing satellite missions are launched. Cumulatively, over 250 such missions, each with a cost equivalent in current value to between US 100 million to US 1000 million, have been sponsored by space agencies in perhaps two dozen countries. These missions produce data and information products which are vital for informed decision making all over the world, on matters relating to natural resource exploitation, health and safety, sustainable national development, infrastructure planning, and a host of other applications. By contributing to better scientific understanding of global changes in the atmosphere, land surface, oceans and ice caps, these silently orbiting sentinels in the sky make it possible for governments and industries to make wiser environmental policy decisions and support the economic development needs of humanity. The international Committee on Earth Observation Satellites (CEOS) is the premier world body for co-ordinating and planning civilian satellite missions for Earth observation. Through its technical working groups and special task teams, it endeavours to: • maximise the international benefits from Earth observation satellites; and • harmonise practice in calibration, validation, data management and information systems for Earth observation. CEOS encompasses not only space agencies (data providers), but also the great international scientific and operational programs which rely on Earth science data from space. The user organisations affiliated with CEOS, together with the mission operators, attempt to reconcile user needs with the complex set of considerations — including national interests, cost, schedule — which affect the undertaking of space missions. Without such an internationally co-ordinated consensual approach, there is a much greater risk of waste through duplication, and of missed opportunity, or through the absence of measurements of some vital physical or biological

Rapid instrumental and separation methods for monitoring radionuclides in food and environmental samples. Final report on an IAEA co-ordinated research programme

International Nuclear Information System (INIS)

1995-01-01

The Co-ordinated Research Programme (CRP) on Rapid Instrumental and Separation Methods for Monitoring Radionuclides in Food and Environmental Samples was established by the Agency following a Consultants' Meeting on the same topic, which was held 5-9 September 1988 in Vienna. It was completed in 1992. At various times during its course it encompassed 15 participants from 14 countries. The scope of work and objectives of the CRP were established at the Consultants' Meeting. It was agreed that the CRP should focus on the development of rapid methods for the determination of radionuclides in food and environmental samples during the intermediate and late post-accident phases. The rapid methods developed during the course of the CRP were intended to permit a timely and accurate determination of radionuclides at concentrations at least one order of magnitude below those specified for Derived Intervention Levels (DILs) for food by the WHO/FAO and the IAEA. Research Co-ordination meetings were held in Warsaw, Poland in September 1989 and in Vienna, Austria in 1991. Reports of the meetings are available from the Agency on Request. This document comprises copies of final reports from the participants and selected contributions presented by the participants at the meetings. The contributions were selected on the basis of being able to stand alone, without further explanation. Where there was an overlap in the information presented by a participant at both meetings, the most complete contribution was selected

Rapid instrumental and separation methods for monitoring radionuclides in food and environmental samples. Final report on an IAEA co-ordinated research programme

Energy Technology Data Exchange (ETDEWEB)

NONE

1995-07-01

The Co-ordinated Research Programme (CRP) on Rapid Instrumental and Separation Methods for Monitoring Radionuclides in Food and Environmental Samples was established by the Agency following a Consultants' Meeting on the same topic, which was held 5-9 September 1988 in Vienna. It was completed in 1992. At various times during its course it encompassed 15 participants from 14 countries. The scope of work and objectives of the CRP were established at the Consultants' Meeting. It was agreed that the CRP should focus on the development of rapid methods for the determination of radionuclides in food and environmental samples during the intermediate and late post-accident phases. The rapid methods developed during the course of the CRP were intended to permit a timely and accurate determination of radionuclides at concentrations at least one order of magnitude below those specified for Derived Intervention Levels (DILs) for food by the WHO/FAO and the IAEA. Research Co-ordination meetings were held in Warsaw, Poland in September 1989 and in Vienna, Austria in 1991. Reports of the meetings are available from the Agency on Request. This document comprises copies of final reports from the participants and selected contributions presented by the participants at the meetings. The contributions were selected on the basis of being able to stand alone, without further explanation. Where there was an overlap in the information presented by a participant at both meetings, the most complete contribution was selected.

The metazoan Mediator co-activator complex as an integrative hub for transcriptional regulation.

Science.gov (United States)

Malik, Sohail; Roeder, Robert G

2010-11-01

The Mediator is an evolutionarily conserved, multiprotein complex that is a key regulator of protein-coding genes. In metazoan cells, multiple pathways that are responsible for homeostasis, cell growth and differentiation converge on the Mediator through transcriptional activators and repressors that target one or more of the almost 30 subunits of this complex. Besides interacting directly with RNA polymerase II, Mediator has multiple functions and can interact with and coordinate the action of numerous other co-activators and co-repressors, including those acting at the level of chromatin. These interactions ultimately allow the Mediator to deliver outputs that range from maximal activation of genes to modulation of basal transcription to long-term epigenetic silencing.

Combined genome-wide expression profiling and targeted RNA interference in primary mouse macrophages reveals perturbation of transcriptional networks associated with interferon signalling

Directory of Open Access Journals (Sweden)

Craigon Marie

2009-08-01

Full Text Available Abstract Background Interferons (IFNs are potent antiviral cytokines capable of reprogramming the macrophage phenotype through the induction of interferon-stimulated genes (ISGs. Here we have used targeted RNA interference to suppress the expression of a number of key genes associated with IFN signalling in murine macrophages prior to stimulation with interferon-gamma. Genome-wide changes in transcript abundance caused by siRNA activity were measured using exon-level microarrays in the presence or absence of IFNγ. Results Transfection of murine bone-marrow derived macrophages (BMDMs with a non-targeting (control siRNA and 11 sequence-specific siRNAs was performed using a cationic lipid transfection reagent (Lipofectamine2000 prior to stimulation with IFNγ. Total RNA was harvested from cells and gene expression measured on Affymetrix GeneChip Mouse Exon 1.0 ST Arrays. Network-based analysis of these data revealed six siRNAs to cause a marked shift in the macrophage transcriptome in the presence or absence IFNγ. These six siRNAs targeted the Ifnb1, Irf3, Irf5, Stat1, Stat2 and Nfkb2 transcripts. The perturbation of the transcriptome by the six siRNAs was highly similar in each case and affected the expression of over 600 downstream transcripts. Regulated transcripts were clustered based on co-expression into five major groups corresponding to transcriptional networks associated with the type I and II IFN response, cell cycle regulation, and NF-KB signalling. In addition we have observed a significant non-specific immune stimulation of cells transfected with siRNA using Lipofectamine2000, suggesting use of this reagent in BMDMs, even at low concentrations, is enough to induce a type I IFN response. Conclusion Our results provide evidence that the type I IFN response in murine BMDMs is dependent on Ifnb1, Irf3, Irf5, Stat1, Stat2 and Nfkb2, and that siRNAs targeted to these genes results in perturbation of key transcriptional networks associated

Non-proportional odds multivariate logistic regression of ordinal family data.

Science.gov (United States)

Zaloumis, Sophie G; Scurrah, Katrina J; Harrap, Stephen B; Ellis, Justine A; Gurrin, Lyle C

2015-03-01

Methods to examine whether genetic and/or environmental sources can account for the residual variation in ordinal family data usually assume proportional odds. However, standard software to fit the non-proportional odds model to ordinal family data is limited because the correlation structure of family data is more complex than for other types of clustered data. To perform these analyses we propose the non-proportional odds multivariate logistic regression model and take a simulation-based approach to model fitting using Markov chain Monte Carlo methods, such as partially collapsed Gibbs sampling and the Metropolis algorithm. We applied the proposed methodology to male pattern baldness data from the Victorian Family Heart Study. © 2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Co-ordinated stage-dependent enhancement of Plasmodium falciparum antioxidant enzymes and heat shock protein expression in parasites growing in oxidatively stressed or G6PD-deficient red blood cells

Directory of Open Access Journals (Sweden)

Müller Sylke

2009-05-01

Full Text Available Abstract Background Plasmodium falciparum-parasitized red blood cells (RBCs are equipped with protective antioxidant enzymes and heat shock proteins (HSPs. The latter are only considered to protect against thermal stress. Important issues are poorly explored: first, it is insufficiently known how both systems are expressed in relation to the parasite developmental stage; secondly, it is unknown whether P. falciparum HSPs are redox-responsive, in view of redox sensitivity of HSP in eukaryotic cells; thirdly, it is poorly known how the antioxidant defense machinery would respond to increased oxidative stress or inhibited antioxidant defense. Those issues are interesting as several antimalarials increase the oxidative stress or block antioxidant defense in the parasitized RBC. In addition, numerous inhibitors of HSPs are currently developed for cancer therapy and might be tested as anti-malarials. Thus, the joint disruption of the parasite antioxidant enzymes/HSP system would interfere with parasite growth and open new perspectives for anti-malaria therapy. Methods Stage-dependent mRNA expression of ten representative P. falciparum antioxidant enzymes and hsp60/70–2/70–3/75/90 was studied by quantitative real-time RT-PCR in parasites growing in normal RBCs, in RBCs oxidatively-stressed by moderate H2O2 generation and in G6PD-deficient RBCs. Protein expression of antioxidant enzymes was assayed by Western blotting. The pentosephosphate-pathway flux was measured in isolated parasites after Sendai-virus lysis of RBC membrane. Results In parasites growing in normal RBCs, mRNA expression of antioxidant enzymes and HSPs displayed co-ordinated stage-dependent modulation, being low at ring, highest at early trophozoite and again very low at schizont stage. Additional exogenous oxidative stress or growth in antioxidant blunted G6PD-deficient RBCs indicated remarkable flexibility of both systems, manifested by enhanced, co-ordinated mRNA expression of

Co-ordinated stage-dependent enhancement of Plasmodium falciparum antioxidant enzymes and heat shock protein expression in parasites growing in oxidatively stressed or G6PD-deficient red blood cells.

Science.gov (United States)

Akide-Ndunge, Oscar Bate; Tambini, Elisa; Giribaldi, Giuliana; McMillan, Paul J; Müller, Sylke; Arese, Paolo; Turrini, Francesco

2009-05-29

Plasmodium falciparum-parasitized red blood cells (RBCs) are equipped with protective antioxidant enzymes and heat shock proteins (HSPs). The latter are only considered to protect against thermal stress. Important issues are poorly explored: first, it is insufficiently known how both systems are expressed in relation to the parasite developmental stage; secondly, it is unknown whether P. falciparum HSPs are redox-responsive, in view of redox sensitivity of HSP in eukaryotic cells; thirdly, it is poorly known how the antioxidant defense machinery would respond to increased oxidative stress or inhibited antioxidant defense. Those issues are interesting as several antimalarials increase the oxidative stress or block antioxidant defense in the parasitized RBC. In addition, numerous inhibitors of HSPs are currently developed for cancer therapy and might be tested as anti-malarials. Thus, the joint disruption of the parasite antioxidant enzymes/HSP system would interfere with parasite growth and open new perspectives for anti-malaria therapy. Stage-dependent mRNA expression of ten representative P. falciparum antioxidant enzymes and hsp60/70-2/70-3/75/90 was studied by quantitative real-time RT-PCR in parasites growing in normal RBCs, in RBCs oxidatively-stressed by moderate H2O2 generation and in G6PD-deficient RBCs. Protein expression of antioxidant enzymes was assayed by Western blotting. The pentosephosphate-pathway flux was measured in isolated parasites after Sendai-virus lysis of RBC membrane. In parasites growing in normal RBCs, mRNA expression of antioxidant enzymes and HSPs displayed co-ordinated stage-dependent modulation, being low at ring, highest at early trophozoite and again very low at schizont stage. Additional exogenous oxidative stress or growth in antioxidant blunted G6PD-deficient RBCs indicated remarkable flexibility of both systems, manifested by enhanced, co-ordinated mRNA expression of antioxidant enzymes and HSPs. Protein expression of

Predictive regulatory models in Drosophila melanogaster by integrative inference of transcriptional networks

Science.gov (United States)

Marbach, Daniel; Roy, Sushmita; Ay, Ferhat; Meyer, Patrick E.; Candeias, Rogerio; Kahveci, Tamer; Bristow, Christopher A.; Kellis, Manolis

2012-01-01

Gaining insights on gene regulation from large-scale functional data sets is a grand challenge in systems biology. In this article, we develop and apply methods for transcriptional regulatory network inference from diverse functional genomics data sets and demonstrate their value for gene function and gene expression prediction. We formulate the network inference problem in a machine-learning framework and use both supervised and unsupervised methods to predict regulatory edges by integrating transcription factor (TF) binding, evolutionarily conserved sequence motifs, gene expression, and chromatin modification data sets as input features. Applying these methods to Drosophila melanogaster, we predict ∼300,000 regulatory edges in a network of ∼600 TFs and 12,000 target genes. We validate our predictions using known regulatory interactions, gene functional annotations, tissue-specific expression, protein–protein interactions, and three-dimensional maps of chromosome conformation. We use the inferred network to identify putative functions for hundreds of previously uncharacterized genes, including many in nervous system development, which are independently confirmed based on their tissue-specific expression patterns. Last, we use the regulatory network to predict target gene expression levels as a function of TF expression, and find significantly higher predictive power for integrative networks than for motif or ChIP-based networks. Our work reveals the complementarity between physical evidence of regulatory interactions (TF binding, motif conservation) and functional evidence (coordinated expression or chromatin patterns) and demonstrates the power of data integration for network inference and studies of gene regulation at the systems level. PMID:22456606

Predictive regulatory models in Drosophila melanogaster by integrative inference of transcriptional networks.

Science.gov (United States)

Marbach, Daniel; Roy, Sushmita; Ay, Ferhat; Meyer, Patrick E; Candeias, Rogerio; Kahveci, Tamer; Bristow, Christopher A; Kellis, Manolis

2012-07-01

Gaining insights on gene regulation from large-scale functional data sets is a grand challenge in systems biology. In this article, we develop and apply methods for transcriptional regulatory network inference from diverse functional genomics data sets and demonstrate their value for gene function and gene expression prediction. We formulate the network inference problem in a machine-learning framework and use both supervised and unsupervised methods to predict regulatory edges by integrating transcription factor (TF) binding, evolutionarily conserved sequence motifs, gene expression, and chromatin modification data sets as input features. Applying these methods to Drosophila melanogaster, we predict ∼300,000 regulatory edges in a network of ∼600 TFs and 12,000 target genes. We validate our predictions using known regulatory interactions, gene functional annotations, tissue-specific expression, protein-protein interactions, and three-dimensional maps of chromosome conformation. We use the inferred network to identify putative functions for hundreds of previously uncharacterized genes, including many in nervous system development, which are independently confirmed based on their tissue-specific expression patterns. Last, we use the regulatory network to predict target gene expression levels as a function of TF expression, and find significantly higher predictive power for integrative networks than for motif or ChIP-based networks. Our work reveals the complementarity between physical evidence of regulatory interactions (TF binding, motif conservation) and functional evidence (coordinated expression or chromatin patterns) and demonstrates the power of data integration for network inference and studies of gene regulation at the systems level.

Update of X- and γ-ray decay data standards for detector calibration and other applications. Summary report of the second research co-ordination meeting

International Nuclear Information System (INIS)

Herman, M.; Nichols, A.L.

2000-09-01

The Second Research Co-ordination Meeting to Update X- and γ-ray Decay Data Standards for Detector Calibration was held at PTB Braunschweig from 10 to 12 May 2000. A primary aim of this meeting was to review progress in the evaluation and recommendation of data under the auspices of the CRP. All CRP activities were reviewed, and actions agreed for the remaining 18 months of the programme. Separate indexing was provided for 13 contributions to the meeting

Update of X- and {gamma}-ray decay data standards for detector calibration and other applications. Summary report of the second research co-ordination meeting

Energy Technology Data Exchange (ETDEWEB)

Herman, M [International Atomic Energy Agency, Nuclear Data Section, Vienna (Austria); Nichols, A L [AEA Technology, Harwell (United Kingdom)

2000-09-01

The Second Research Co-ordination Meeting to Update X- and {gamma}-ray Decay Data Standards for Detector Calibration was held at PTB Braunschweig from 10 to 12 May 2000. A primary aim of this meeting was to review progress in the evaluation and recommendation of data under the auspices of the CRP. All CRP activities were reviewed, and actions agreed for the remaining 18 months of the programme. Separate indexing was provided for 13 contributions to the meeting.

Deciphering Fur transcriptional regulatory network highlights its complex role beyond iron metabolism in Escherichia coli

DEFF Research Database (Denmark)

Seo, Sang Woo; Kim, Donghyuk; Latif, Haythem

2014-01-01

The ferric uptake regulator (Fur) plays a critical role in the transcriptional regulation of iron metabolism. However, the full regulatory potential of Fur remains undefined. Here we comprehensively reconstruct the Fur transcriptional regulatory network in Escherichia coli K-12 MG1655 in response...

The Brakeless co-regulator can directly activate and repress transcription in early Drosophila embryos.

Science.gov (United States)

Crona, Filip; Holmqvist, Per-Henrik; Tang, Min; Singla, Bhumica; Vakifahmetoglu-Norberg, Helin; Fantur, Katrin; Mannervik, Mattias

2015-11-01

The Brakeless protein performs many important functions during Drosophila development, but how it controls gene expression is poorly understood. We previously showed that Brakeless can function as a transcriptional co-repressor. In this work, we perform transcriptional profiling of brakeless mutant embryos. Unexpectedly, the majority of affected genes are down-regulated in brakeless mutants. We demonstrate that genomic regions in close proximity to some of these genes are occupied by Brakeless, that over-expression of Brakeless causes a reciprocal effect on expression of these genes, and that Brakeless remains an activator of the genes upon fusion to an activation domain. Together, our results show that Brakeless can both repress and activate gene expression. A yeast two-hybrid screen identified the Mediator complex subunit Med19 as interacting with an evolutionarily conserved part of Brakeless. Both down- and up-regulated Brakeless target genes are also affected in Med19-depleted embryos, but only down-regulated targets are influenced in embryos depleted of both Brakeless and Med19. Our data provide support for a Brakeless activator function that regulates transcription by interacting with Med19. We conclude that the transcriptional co-regulator Brakeless can either activate or repress transcription depending on context. Copyright © 2015 Elsevier Inc. All rights reserved.

Connectivity in the yeast cell cycle transcription network: inferences from neural networks.

Directory of Open Access Journals (Sweden)

Christopher E Hart

2006-12-01

Full Text Available A current challenge is to develop computational approaches to infer gene network regulatory relationships based on multiple types of large-scale functional genomic data. We find that single-layer feed-forward artificial neural network (ANN models can effectively discover gene network structure by integrating global in vivo protein:DNA interaction data (ChIP/Array with genome-wide microarray RNA data. We test this on the yeast cell cycle transcription network, which is composed of several hundred genes with phase-specific RNA outputs. These ANNs were robust to noise in data and to a variety of perturbations. They reliably identified and ranked 10 of 12 known major cell cycle factors at the top of a set of 204, based on a sum-of-squared weights metric. Comparative analysis of motif occurrences among multiple yeast species independently confirmed relationships inferred from ANN weights analysis. ANN models can capitalize on properties of biological gene networks that other kinds of models do not. ANNs naturally take advantage of patterns of absence, as well as presence, of factor binding associated with specific expression output; they are easily subjected to in silico "mutation" to uncover biological redundancies; and they can use the full range of factor binding values. A prominent feature of cell cycle ANNs suggested an analogous property might exist in the biological network. This postulated that "network-local discrimination" occurs when regulatory connections (here between MBF and target genes are explicitly disfavored in one network module (G2, relative to others and to the class of genes outside the mitotic network. If correct, this predicts that MBF motifs will be significantly depleted from the discriminated class and that the discrimination will persist through evolution. Analysis of distantly related Schizosaccharomyces pombe confirmed this, suggesting that network-local discrimination is real and complements well-known enrichment of

Rewiring the severe acute respiratory syndrome coronavirus (SARS-CoV) transcription circuit: Engineering a recombination-resistant genome

Science.gov (United States)

Yount, Boyd; Roberts, Rhonda S.; Lindesmith, Lisa; Baric, Ralph S.

2006-08-01

Live virus vaccines provide significant protection against many detrimental human and animal diseases, but reversion to virulence by mutation and recombination has reduced appeal. Using severe acute respiratory syndrome coronavirus as a model, we engineered a different transcription regulatory circuit and isolated recombinant viruses. The transcription network allowed for efficient expression of the viral transcripts and proteins, and the recombinant viruses replicated to WT levels. Recombinant genomes were then constructed that contained mixtures of the WT and mutant regulatory circuits, reflecting recombinant viruses that might occur in nature. Although viable viruses could readily be isolated from WT and recombinant genomes containing homogeneous transcription circuits, chimeras that contained mixed regulatory networks were invariantly lethal, because viable chimeric viruses were not isolated. Mechanistically, mixed regulatory circuits promoted inefficient subgenomic transcription from inappropriate start sites, resulting in truncated ORFs and effectively minimize viral structural protein expression. Engineering regulatory transcription circuits of intercommunicating alleles successfully introduces genetic traps into a viral genome that are lethal in RNA recombinant progeny viruses. regulation | systems biology | vaccine design

Cis-Natural Antisense Transcripts Are Mainly Co-expressed with Their Sense Transcripts and Primarily Related to Energy Metabolic Pathways during Muscle Development.

Science.gov (United States)

Zhao, Yunxia; Hou, Ye; Zhao, Changzhi; Liu, Fei; Luan, Yu; Jing, Lu; Li, Xinyun; Zhu, Mengjin; Zhao, Shuhong

2016-01-01

Cis-natural antisense transcripts (cis-NATs) are a new class of RNAs identified in various species. However, the biological functions of cis-NATs are largely unknown. In this study, we investigated the transcriptional characteristics and functions of cis-NATs in the muscle tissue of lean Landrace and indigenous fatty Lantang pigs. In total, 3,306 cis-NATs of 2,469 annotated genes were identified in the muscle tissue of pigs. More than 1,300 cis-NATs correlated with their sense genes at the transcriptional level, and approximately 80% of them were co-expressed in the two breeds. Furthermore, over 1,200 differentially expressed cis-NATs were identified during muscle development. Function annotation showed that the cis-NATs participated in muscle development mainly by co-expressing with genes involved in energy metabolic pathways, including citrate cycle (TCA cycle), glycolysis or gluconeogenesis, mitochondrial activation and so on. Moreover, these cis-NATs and their sense genes abruptly increased at the transition from the late fetal stages to the early postnatal stages and then decreased along with muscle development. In conclusion, the cis-NATs in the muscle tissue of pigs were identified and determined to be mainly co-expressed with their sense genes. The co-expressed cis-NATs and their sense gene were primarily related to energy metabolic pathways during muscle development in pigs. Our results offered novel evidence on the roles of cis-NATs during the muscle development of pigs.

Hierarchical structure and modules in the Escherichia coli transcriptional regulatory network revealed by a new top-down approach

Directory of Open Access Journals (Sweden)

Buer Jan

2004-12-01

Full Text Available Abstract Background Cellular functions are coordinately carried out by groups of genes forming functional modules. Identifying such modules in the transcriptional regulatory network (TRN of organisms is important for understanding the structure and function of these fundamental cellular networks and essential for the emerging modular biology. So far, the global connectivity structure of TRN has not been well studied and consequently not applied for the identification of functional modules. Moreover, network motifs such as feed forward loop are recently proposed to be basic building blocks of TRN. However, their relationship to functional modules is not clear. Results In this work we proposed a top-down approach to identify modules in the TRN of E. coli. By studying the global connectivity structure of the regulatory network, we first revealed a five-layer hierarchical structure in which all the regulatory relationships are downward. Based on this regulatory hierarchy, we developed a new method to decompose the regulatory network into functional modules and to identify global regulators governing multiple modules. As a result, 10 global regulators and 39 modules were identified and shown to have well defined functions. We then investigated the distribution and composition of the two basic network motifs (feed forward loop and bi-fan motif in the hierarchical structure of TRN. We found that most of these network motifs include global regulators, indicating that these motifs are not basic building blocks of modules since modules should not contain global regulators. Conclusion The transcriptional regulatory network of E. coli possesses a multi-layer hierarchical modular structure without feedback regulation at transcription level. This hierarchical structure builds the basis for a new and simple decomposition method which is suitable for the identification of functional modules and global regulators in the transcriptional regulatory network of E

Use of irradiation for chemical and microbial decontamination of water, wastewater and sludge. Final report of a co-ordinated research project 1995-1999

International Nuclear Information System (INIS)

2001-06-01

The co-ordinated research project (CRP) was established in order to focus the attention of appropriate technical experts in integrating the effects of ionizing radiation on refractory organic pollutants and pathogenic microorganisms and parasites in the treatment of water, waste water and sewage sludge. This publication describes the findings of the CRP in three subject areas: ground water remediation, decontamination of industrial and municipal waste water and sewage sludge hygienization. This publication contains 11 individual papers from participants; each of the papers was indexed separately

Nuclear model parameter testing for nuclear data evaluation (Reference Input Parameter Library: Phase II). Summary report of the third research co-ordination meeting

International Nuclear Information System (INIS)

Herman, M.

2002-04-01

This report summarises the results and recommendations of the third Research Co-ordination Meeting on improving and testing the Reference Input Parameter Library: Phase II. A primary aim of the meeting was to review the achievements of the CRP, to assess the testing of the library and to approve the final contents. Actions were approved that will result in completion of the file and a draft report by the end of February 2002. Full release of the library is scheduled for July 2002. (author)

The academic library network

Directory of Open Access Journals (Sweden)

Jacek Wojciechowski

2012-01-01

Full Text Available The efficiency of libraries, academic libraries in particular, necessitates organizational changes facilitating or even imposing co-operation. Any structure of any university has to have an integrated network of libraries, with an appropriate division of work, and one that is consolidated as much as it is possible into medium-size or large libraries. Within thus created network, a chance arises to centralize the main library processes based on appropriate procedures in the main library, highly specialized, more effective and therefore cheaper in operation, including a co-ordination of all more important endeavours and tasks. Hierarchically subordinated libraries can be thus more focused on performing their routine service, more and more frequently providing for the whole of the university, and being able to adjust to changeable requirements and demands of patrons and of new tasks resulting from the new model of the university operation. Another necessary change seems to be a universal implementation of an ov rall programme framework that would include all services in the university’s library networks.

Co-ordinated research and environmental surveillance programme related to sea disposal of radioactive waste

International Nuclear Information System (INIS)

1984-01-01

Sea disposal operations of packaged low-level radioactive waste are carried out under the provisions of the Convention on the Prevention of Marine Pollution by Dumping of Wastes and Other Matter, also referred to as the London Dumping Convention. The environmental impact of this disposal method is continuously kept under review, in particular within the IAEA which has provided the ''Definition of High-Level Radioactive Waste or Other High-Level Radioactive Matter Unsuitable for Dumping at Sea'' for the purpose of the Convention and within the OECD-NEA in the framework of its Multilateral Consultation and Surveillance Mechanism for Sea Dumping of Radioactive Waste. The NEA Co-Ordinated Research and Environmental Surveillance Programme (CRESP) is focussed on the actual North-East Atlantic dump site. Its objective is to increase the available scientific data base related to the oceanographic and biological characteristics of the dump site and elaborate a site specific model of the transfers of radionuclides to human populations. Future site suitability reviews, as periodically requested under the terms of the Multilateral Consultation and Surveillance Mechanism, will therefore be based on a more accurate and comprehensive scientific basis

c-Myc Antagonises the Transcriptional Activity of the Androgen Receptor in Prostate Cancer Affecting Key Gene Networks.

Science.gov (United States)

Barfeld, Stefan J; Urbanucci, Alfonso; Itkonen, Harri M; Fazli, Ladan; Hicks, Jessica L; Thiede, Bernd; Rennie, Paul S; Yegnasubramanian, Srinivasan; DeMarzo, Angelo M; Mills, Ian G

2017-04-01

Prostate cancer (PCa) is the most common non-cutaneous cancer in men. The androgen receptor (AR), a ligand-activated transcription factor, constitutes the main drug target for advanced cases of the disease. However, a variety of other transcription factors and signaling networks have been shown to be altered in patients and to influence AR activity. Amongst these, the oncogenic transcription factor c-Myc has been studied extensively in multiple malignancies and elevated protein levels of c-Myc are commonly observed in PCa. Its impact on AR activity, however, remains elusive. In this study, we assessed the impact of c-Myc overexpression on AR activity and transcriptional output in a PCa cell line model and validated the antagonistic effect of c-MYC on AR-targets in patient samples. We found that c-Myc overexpression partially reprogrammed AR chromatin occupancy and was associated with altered histone marks distribution, most notably H3K4me1 and H3K27me3. We found c-Myc and the AR co-occupy a substantial number of binding sites and these exhibited enhancer-like characteristics. Interestingly, c-Myc overexpression antagonised clinically relevant AR target genes. Therefore, as an example, we validated the antagonistic relationship between c-Myc and two AR target genes, KLK3 (alias PSA, prostate specific antigen), and Glycine N-Methyltransferase (GNMT), in patient samples. Our findings provide unbiased evidence that MYC overexpression deregulates the AR transcriptional program, which is thought to be a driving force in PCa. Crown Copyright © 2017. Published by Elsevier B.V. All rights reserved.

c-Myc Antagonises the Transcriptional Activity of the Androgen Receptor in Prostate Cancer Affecting Key Gene Networks

Directory of Open Access Journals (Sweden)

Stefan J. Barfeld

2017-04-01

Full Text Available Prostate cancer (PCa is the most common non-cutaneous cancer in men. The androgen receptor (AR, a ligand-activated transcription factor, constitutes the main drug target for advanced cases of the disease. However, a variety of other transcription factors and signaling networks have been shown to be altered in patients and to influence AR activity. Amongst these, the oncogenic transcription factor c-Myc has been studied extensively in multiple malignancies and elevated protein levels of c-Myc are commonly observed in PCa. Its impact on AR activity, however, remains elusive. In this study, we assessed the impact of c-Myc overexpression on AR activity and transcriptional output in a PCa cell line model and validated the antagonistic effect of c-MYC on AR-targets in patient samples. We found that c-Myc overexpression partially reprogrammed AR chromatin occupancy and was associated with altered histone marks distribution, most notably H3K4me1 and H3K27me3. We found c-Myc and the AR co-occupy a substantial number of binding sites and these exhibited enhancer-like characteristics. Interestingly, c-Myc overexpression antagonised clinically relevant AR target genes. Therefore, as an example, we validated the antagonistic relationship between c-Myc and two AR target genes, KLK3 (alias PSA, prostate specific antigen, and Glycine N-Methyltransferase (GNMT, in patient samples. Our findings provide unbiased evidence that MYC overexpression deregulates the AR transcriptional program, which is thought to be a driving force in PCa.

Radiation (Safety Control) Ordinance 1978

International Nuclear Information System (INIS)

1978-01-01

This Ordinance provides for the control, regulation, possession, use and transport of radioactive substance and irradiating apparatus. The Director of Health is responsible for administration of the Ordinance, which contains detailed provisions concerning the terms and conditions of licences, duties of licensees, medical examinations, maximum radiation doses, precautions to be taken to avoid exceeding such doses. The Ordinance also lays down a system of record-keeping and registration as well as packaging specifications for the transport of radioactive substances. (NEA) [fr

Ordinal bivariate inequality

DEFF Research Database (Denmark)

Sonne-Schmidt, Christoffer Scavenius; Tarp, Finn; Østerdal, Lars Peter Raahave

This paper introduces a concept of inequality comparisons with ordinal bivariate categorical data. In our model, one population is more unequal than another when they have common arithmetic median outcomes and the first can be obtained from the second by correlationincreasing switches and/or median......-preserving spreads. For the canonical 2x2 case (with two binary indicators), we derive a simple operational procedure for checking ordinal inequality relations in practice. As an illustration, we apply the model to childhood deprivation in Mozambique....

Radiographic evaluation of corrosion and deposits in pipelines: results of an IAEA co-ordinated research programme

International Nuclear Information System (INIS)

Zscherpel, U.; Ewert, U.; Infanzon, S.; Rastkhan, N.; Vaidya, P.R.; Einav, I.; Ekinci, S.

2006-01-01

The principle of wall thickness measurement and monitoring of corrosion and deposits by means of film-based tangential projection radiography is known since decades. Nevertheless, there are no international standards and guidelines available. The International Atomic Energy Agency has organized a co-ordinated research programme bringing together participants from twelve member states to study the state of the art. The general scope of the project covered radiographic inspection of corrosion and deposits in steel pipes (diameter >150mm) corroded on the outer or inner surfaces with or without insulation. Two inspection methods have been investigated: 1. tangential radiographic projection technique (TRT) and 2. double wall inspection technique (DWT). The application ranges of both methods were studied depending on pipe diameter, wall thickness, radiation source (X-ray, Ir-192 and Co-60 were used) and screen/film combination. Diagrams for application limits using TRT have been designed and verified by the participating countries. All measurements have been performed on special designed test pieces and also industrial pipes. Corrosion measurements based on DWT are more sophisticated and use effective attenuation coefficients to calculate wall thickness changes from density differences shown on the film. The values of effective attenuation coefficients, established for Ir-192 and Co-60, are stable and independent in a wide range on pipe diameter and insulation. Guidelines were developed and tested in the twelve different countries to determine the reliability of this technology. A testing procedure approved by the project partners has been released and shall be submitted as standard proposal. (orig.)

Mathematical models and their applications to isotope studies in groundwater hydrology. Proceedings of a final research co-ordination meeting held in Vienna, 1-4 June 1993

International Nuclear Information System (INIS)

1994-12-01

Tracer Techniques have proved to be useful tool for assessing, developing and water management of water resources. IAEA initiated a co-ordinated research programme (CRP) to improve quantitative evaluation of isotope data collected in groundwater hydrology. This publication compiles papers summarizing the results and findings of the work undertaken by participating institutes. Both mathematical modelling and their applications to isotope data on actual field results are covered. Refs, figs and tabs

Analysis of a Plant Transcriptional Regulatory Network Using Transient Expression Systems.

Science.gov (United States)

Díaz-Triviño, Sara; Long, Yuchen; Scheres, Ben; Blilou, Ikram

2017-01-01

In plant biology, transient expression systems have become valuable approaches used routinely to rapidly study protein expression, subcellular localization, protein-protein interactions, and transcriptional activity prior to in vivo studies. When studying transcriptional regulation, luciferase reporter assays offer a sensitive readout for assaying promoter behavior in response to different regulators or environmental contexts and to confirm and assess the functional relevance of predicted binding sites in target promoters. This chapter aims to provide detailed methods for using luciferase reporter system as a rapid, efficient, and versatile assay to analyze transcriptional regulation of target genes by transcriptional regulators. We describe a series of optimized transient expression systems consisting of Arabidopsis thaliana protoplasts, infiltrated Nicotiana benthamiana leaves, and human HeLa cells to study the transcriptional regulations of two well-characterized transcriptional regulators SCARECROW (SCR) and SHORT-ROOT (SHR) on one of their targets, CYCLIN D6 (CYCD6).Here, we illustrate similarities and differences in outcomes when using different systems. The plant-based systems revealed that the SCR-SHR complex enhances CYCD6 transcription, while analysis in HeLa cells showed that the complex is not sufficient to strongly induce CYCD6 transcription, suggesting that additional, plant-specific regulators are required for full activation. These results highlight the importance of the system and suggest that including heterologous systems, such as HeLa cells, can provide a more comprehensive analysis of a complex gene regulatory network.

Trimming of mammalian transcriptional networks using network component analysis

Directory of Open Access Journals (Sweden)

Liao James C

2010-10-01

Full Text Available Abstract Background Network Component Analysis (NCA has been used to deduce the activities of transcription factors (TFs from gene expression data and the TF-gene binding relationship. However, the TF-gene interaction varies in different environmental conditions and tissues, but such information is rarely available and cannot be predicted simply by motif analysis. Thus, it is beneficial to identify key TF-gene interactions under the experimental condition based on transcriptome data. Such information would be useful in identifying key regulatory pathways and gene markers of TFs in further studies. Results We developed an algorithm to trim network connectivity such that the important regulatory interactions between the TFs and the genes were retained and the regulatory signals were deduced. Theoretical studies demonstrated that the regulatory signals were accurately reconstructed even in the case where only three independent transcriptome datasets were available. At least 80% of the main target genes were correctly predicted in the extreme condition of high noise level and small number of datasets. Our algorithm was tested with transcriptome data taken from mice under rapamycin treatment. The initial network topology from the literature contains 70 TFs, 778 genes, and 1423 edges between the TFs and genes. Our method retained 1074 edges (i.e. 75% of the original edge number and identified 17 TFs as being significantly perturbed under the experimental condition. Twelve of these TFs are involved in MAPK signaling or myeloid leukemia pathways defined in the KEGG database, or are known to physically interact with each other. Additionally, four of these TFs, which are Hif1a, Cebpb, Nfkb1, and Atf1, are known targets of rapamycin. Furthermore, the trimmed network was able to predict Eno1 as an important target of Hif1a; this key interaction could not be detected without trimming the regulatory network. Conclusions The advantage of our new algorithm

Dose determination with plane-parallel ionization chambers in therapeutic electron and photon beams. Report of the 2nd research co-ordinated meeting (326-E2-RC-641.2), March 30 - April 3, 1998, Barcelona, Spain

International Nuclear Information System (INIS)

Andreo, P.

1999-01-01

In 1987, the IAEA published a report entitled 'Absorbed Dose Determination in Photon and Electron Beams: An International Code of Practice' (IAEA Technical Reports Series No. 277) to advise users how to obtain the absorbed dose in water from the measurements made with an ionization chamber, calibrated in terms of air kerma. For high-energy photons (energies above 1 MeV) the chamber calibration was at a single photon quality (Cobalt-60 gamma rays). The scientific scope of the Co-ordinated Research Project is to investigate the accuracy of the new data and procedures included in the Code of Practice IAEA TRS-381. Differences with existing recommendations, published by national organizations, are to be evaluated to analyze the possible impact on patient dosimetry. The second Research Co-ordination Meeting (RCM) was organized to revise the activities in the Co-ordinated Research Project (CRP) and the status of the various projects. The status of the on-going work under the frame of the CRP was presented by the participants in the RCM during the first two days and each contribution discussed in detail. During the following days, plans were made on the work left for each participant to complete the project and the feasibility of preparing a report describing in detail the work done in the project

Irradiation to control Vibrio infection from consumption of raw seafood and fresh produce. Results of a co-ordinated research project

International Nuclear Information System (INIS)

2001-04-01

Vibrio spp. comprises an important group of pathogenic bacteria in food that often causes human illness and even death when the contaminated food is consumed raw or improperly cooked. The most dangerous member of this group, the El Tor strain of V. cholerae, was responsible for the cholera pandemic which started in Peru in 1991 and spread to nearby countries, resulting in hundreds of thousands of cases and thousands of deaths. Recognizing the role of irradiation to ensure the microbiological safety of food, the Pan American Health Organization of the World Health Organization and the Joint FAO/IAEA Division of Nuclear Techniques in Food and Agriculture jointly sponsored a Co-ordinated Research Project (CRP) on the Use of Irradiation as a Public Health Intervention Measure to Control Foodborne Diseases in Latin America and the Caribbean, to assess the efficacy of this technology for food protection. The CRP was initiated in 1993 and concluded in 1998. The results of this CRP demonstrated that irradiation is effective for ensuring the microbiological safety of food naturally contaminated by Vibrio spp. This process offers unique benefits for decontamination of seafood, often contaminated with this group of aquatic bacteria at the source, and fresh vegetables that may be contaminated during production and handling, especially when these products are consumed raw or not thoroughly cooked. Because of the sensitivity of this group of bacteria to radiation, the dose required to ensure microbiological safety of food against them is not more than 1 kGy. The CRP also generated data on the effectiveness of irradiation to control infection by pork tapeworm (Taenia solium metacestode). However, the results of these studies were not conclusive enough for publication. This publication presents the research results reported at the final Research Co-ordination meeting on this CRP held in Havana, Cuba, 16-20 November 1998

Irradiation to control Vibrio infection from consumption of raw seafood and fresh produce. Results of a co-ordinated research project

Energy Technology Data Exchange (ETDEWEB)

NONE

2001-04-01

Vibrio spp. comprises an important group of pathogenic bacteria in food that often causes human illness and even death when the contaminated food is consumed raw or improperly cooked. The most dangerous member of this group, the El Tor strain of V. cholerae, was responsible for the cholera pandemic which started in Peru in 1991 and spread to nearby countries, resulting in hundreds of thousands of cases and thousands of deaths. Recognizing the role of irradiation to ensure the microbiological safety of food, the Pan American Health Organization of the World Health Organization and the Joint FAO/IAEA Division of Nuclear Techniques in Food and Agriculture jointly sponsored a Co-ordinated Research Project (CRP) on the Use of Irradiation as a Public Health Intervention Measure to Control Foodborne Diseases in Latin America and the Caribbean, to assess the efficacy of this technology for food protection. The CRP was initiated in 1993 and concluded in 1998. The results of this CRP demonstrated that irradiation is effective for ensuring the microbiological safety of food naturally contaminated by Vibrio spp. This process offers unique benefits for decontamination of seafood, often contaminated with this group of aquatic bacteria at the source, and fresh vegetables that may be contaminated during production and handling, especially when these products are consumed raw or not thoroughly cooked. Because of the sensitivity of this group of bacteria to radiation, the dose required to ensure microbiological safety of food against them is not more than 1 kGy. The CRP also generated data on the effectiveness of irradiation to control infection by pork tapeworm (Taenia solium metacestode). However, the results of these studies were not conclusive enough for publication. This publication presents the research results reported at the final Research Co-ordination meeting on this CRP held in Havana, Cuba, 16-20 November 1998.

Ordinance on protection from the harmful effects of X-radiation (X-ray Ordinance). As of January 8, 1987. 3. ed.

International Nuclear Information System (INIS)

Hinrichs, O.

1992-01-01

The German X-ray Ordinance (Roentgenverordnung) contains the main protective provisions applying to the field of X-ray equipment and sources of unwanted X radiation. It thus forms a complement to the German Radiation Protection Ordinance (Strahlenschutzverordnung). The X-ray Ordinance is based, as is the Radiation Protection Ordinance, on the German Nuclear Energy Act (Atomgesetz). It transposes the same Euratom Directives into national law, through which above all the limit values are defined. The current state of the X-ray Ordinance is that of the text promulgated on 8.01.1987 with the subsequent amendments, the last of which was adopted on 19.12.1990. The brochure also reproduces the Official Memorandum to the X-ray Ordinance, as this gives important indications for the legal construction of the Ordinance. (orig./HSCH) [de

Memory-Based Specification of Verbal Features for Classifying Animals into Super-Ordinate and Sub-Ordinate Categories

Directory of Open Access Journals (Sweden)

Takahiro Soshi

2017-09-01

Full Text Available Accumulating evidence suggests that category representations are based on features. Distinguishing features are considered to define categories, because of all-or-none responses for objects in different categories; however, it is unclear how distinguishing features actually classify objects at various category levels. The present study included 75 animals within three classes (mammal, bird, and fish, along with 195 verbal features. Healthy adults participated in memory-based feature-animal matching verification tests. Analyses included a hierarchical clustering analysis, support vector machine, and independent component analysis to specify features effective for classifications. Quantitative and qualitative comparisons for significant features were conducted between super-ordinate and sub-ordinate levels. The number of significant features was larger for super-ordinate than sub-ordinate levels. Qualitatively, the proportion of biological features was larger than cultural/affective features in both the levels, while the proportion of affective features increased at the sub-ordinate level. To summarize, the two types of features differentially function to establish category representations.

Summary report of the 3. research co-ordination meeting on development of reference input parameter library for nuclear model calculations of nuclear data (Phase 1: Starter File)

International Nuclear Information System (INIS)

Oblozinsky, P.

1997-09-01

The report contains the summary of the third and the last Research Co-ordination Meeting on ''Development of Reference Input Parameter Library for Nuclear Model Calculations of Nuclear Data (Phase I: Starter File)'', held at the ICTP, Trieste, Italy, from 26 to 29 May 1997. Details are given on the status of the Handbook and the Starter File - two major results of the project. (author)

The use of nuclear techniques in the management of nitrogen fixation by trees to enhance fertility of fragile tropical soils. Results of a co-ordinated research project

International Nuclear Information System (INIS)

1998-11-01

The Joint FAO/IAEA Division of Nuclear Techniques in Food and Agriculture initiated in 1990 a Co-ordinated Research Project on The Use of Nuclear or Related Techniques in Management of Nitrogen Fixation by Trees for Enhancing Soil Fertility and Soil Conservation in Fragile Tropical Soils. This document contains nine papers referring to the results of the project. A separate abstract was prepared for each paper

Oncogenes Activate an Autonomous Transcriptional Regulatory Circuit That Drives Glioblastoma

Directory of Open Access Journals (Sweden)

Dinesh K. Singh

2017-01-01

Full Text Available Efforts to identify and target glioblastoma (GBM drivers have primarily focused on receptor tyrosine kinases (RTKs. Clinical benefits, however, have been elusive. Here, we identify an SRY-related box 2 (SOX2 transcriptional regulatory network that is independent of upstream RTKs and capable of driving glioma-initiating cells. We identified oligodendrocyte lineage transcription factor 2 (OLIG2 and zinc-finger E-box binding homeobox 1 (ZEB1, which are frequently co-expressed irrespective of driver mutations, as potential SOX2 targets. In murine glioma models, we show that different combinations of tumor suppressor and oncogene mutations can activate Sox2, Olig2, and Zeb1 expression. We demonstrate that ectopic co-expression of the three transcription factors can transform tumor-suppressor-deficient astrocytes into glioma-initiating cells in the absence of an upstream RTK oncogene. Finally, we demonstrate that the transcriptional inhibitor mithramycin downregulates SOX2 and its target genes, resulting in markedly reduced proliferation of GBM cells in vivo.

Ordinal Bivariate Inequality

DEFF Research Database (Denmark)

Sonne-Schmidt, Christoffer Scavenius; Tarp, Finn; Østerdal, Lars Peter Raahave

2016-01-01

This paper introduces a concept of inequality comparisons with ordinal bivariate categorical data. In our model, one population is more unequal than another when they have common arithmetic median outcomes and the first can be obtained from the second by correlation-increasing switches and....../or median-preserving spreads. For the canonical 2 × 2 case (with two binary indicators), we derive a simple operational procedure for checking ordinal inequality relations in practice. As an illustration, we apply the model to childhood deprivation in Mozambique....

Isotope studies on plant productivity. Results of a co-ordinated research programme

International Nuclear Information System (INIS)

1996-07-01

In order to explore this approach, a Co-ordinated Research Programme (CRP) on the Use of Isotope Studies for Increasing and Stabilizing Plant Productivity in Low Phosphate and Semi-arid and Sub-humid Soils of the Tropics and Sub-tropics was initiated in October 1989 and complete in October 1994. Almost half of the work carried out under this programme concentrated on water use efficiency and the rest on phosphate use efficiency. Egypt, Morocco and Tunisia focused on wheat; Nigeria and Sierra Leone on cowpea; Kenya, Sudan and the United Republic of Tanzania on nitrogen fixing trees such as Prosopis, Acacia and Gliricidia; and Viet Nam on rice. Experiments conducted in the field showed that there is a wealth of genetic diversity among the genotypes/provenances of crop and tree species in their capacity for uptake and use of phosphorus and water from soils limited in resources. Several elite genotypes/provenances were identified which are highly efficient in water or phosphate use. In a few cases, the high water use efficiency (or the high phosphorus use efficiency) feature was seen in the same genotype where the grain yield was also high. Morphological parameters responsible for making some genotypes superior in their capacity to use phosphorus or water have also been investigated. It is our hope that the findings reported in this publication will help agricultural scientists in the Member States, particularly in Africa, in their quest of finding solutions to problems of food security. Refs, figs, tabs

Isotope studies on plant productivity. Results of a co-ordinated research programme

Energy Technology Data Exchange (ETDEWEB)

NONE

1996-07-01

In order to explore this approach, a Co-ordinated Research Programme (CRP) on the Use of Isotope Studies for Increasing and Stabilizing Plant Productivity in Low Phosphate and Semi-arid and Sub-humid Soils of the Tropics and Sub-tropics was initiated in October 1989 and complete in October 1994. Almost half of the work carried out under this programme concentrated on water use efficiency and the rest on phosphate use efficiency. Egypt, Morocco and Tunisia focused on wheat; Nigeria and Sierra Leone on cowpea; Kenya, Sudan and the United Republic of Tanzania on nitrogen fixing trees such as Prosopis, Acacia and Gliricidia; and Viet Nam on rice. Experiments conducted in the field showed that there is a wealth of genetic diversity among the genotypes/provenances of crop and tree species in their capacity for uptake and use of phosphorus and water from soils limited in resources. Several elite genotypes/provenances were identified which are highly efficient in water or phosphate use. In a few cases, the high water use efficiency (or the high phosphorus use efficiency) feature was seen in the same genotype where the grain yield was also high. Morphological parameters responsible for making some genotypes superior in their capacity to use phosphorus or water have also been investigated. It is our hope that the findings reported in this publication will help agricultural scientists in the Member States, particularly in Africa, in their quest of finding solutions to problems of food security. Refs, figs, tabs.

A linear programming approach for estimating the structure of a sparse linear genetic network from transcript profiling data

Directory of Open Access Journals (Sweden)

Chandra Nagasuma R

2009-02-01

Full Text Available Abstract Background A genetic network can be represented as a directed graph in which a node corresponds to a gene and a directed edge specifies the direction of influence of one gene on another. The reconstruction of such networks from transcript profiling data remains an important yet challenging endeavor. A transcript profile specifies the abundances of many genes in a biological sample of interest. Prevailing strategies for learning the structure of a genetic network from high-dimensional transcript profiling data assume sparsity and linearity. Many methods consider relatively small directed graphs, inferring graphs with up to a few hundred nodes. This work examines large undirected graphs representations of genetic networks, graphs with many thousands of nodes where an undirected edge between two nodes does not indicate the direction of influence, and the problem of estimating the structure of such a sparse linear genetic network (SLGN from transcript profiling data. Results The structure learning task is cast as a sparse linear regression problem which is then posed as a LASSO (l1-constrained fitting problem and solved finally by formulating a Linear Program (LP. A bound on the Generalization Error of this approach is given in terms of the Leave-One-Out Error. The accuracy and utility of LP-SLGNs is assessed quantitatively and qualitatively using simulated and real data. The Dialogue for Reverse Engineering Assessments and Methods (DREAM initiative provides gold standard data sets and evaluation metrics that enable and facilitate the comparison of algorithms for deducing the structure of networks. The structures of LP-SLGNs estimated from the INSILICO1, INSILICO2 and INSILICO3 simulated DREAM2 data sets are comparable to those proposed by the first and/or second ranked teams in the DREAM2 competition. The structures of LP-SLGNs estimated from two published Saccharomyces cerevisae cell cycle transcript profiling data sets capture known

Tree Ordination as Invented Tradition

Directory of Open Access Journals (Sweden)

Avery Morrow

2012-01-01

Full Text Available The symbolic ordination of trees as monks in Thailand is widely perceived in Western scholarship to be proof of the power of Buddhism to spur ecological thought. However, a closer analysis of tree ordination demonstrates that it is not primarily about Buddhist teaching, but rather is an invented tradition based on the sanctity of Thai Buddhist symbols as well as those of spirit worship and the monarchy. Tree ordinations performed by non-Buddhist minorities in Thailand do not demonstrate a religious commitment but rather a political one.

Co-ordination of the international network of nuclear structure and decay data evaluators

International Nuclear Information System (INIS)

Schmidt, J.J.

1988-10-01

The IAEA Nuclear Data Section convened the eighth meeting of the international nuclear structure and decay data network at Ghent, Belgium, 16-20 May 1988. The meeting was attended by 21 scientists from 12 Member States and three international organizations, concerned with the compilation, evaluation, and dissemination of nuclear structure and decay data. This document contains a summary of the meeting, the proceedings of the meeting and in appendices status reports of activities in nuclear structure and decay data from the participating centers. Refs and tabs

Deciphering microbial interactions and detecting keystone species with co-occurrence networks

Directory of Open Access Journals (Sweden)

David eBerry

2014-05-01

Full Text Available Co-occurrence networks produced from microbial survey sequencing data are frequently used to identify interactions between community members. While this approach has potential to reveal ecological processes, it has been insufficiently validated due to the technical limitations inherent in studying complex microbial ecosystems. Here, we simulate multi-species microbial communities with known interaction patterns using generalized Lotka-Volterra dynamics, construct co-occurrence networks, and evaluate how well networks reveal the underlying interactions, and how experimental and ecological parameters can affect network inference and interpretation. We find that co-occurrence networks can recapitulate interaction networks under certain conditions, but that they lose interpretability when the effects of habitat filtering become significant. We demonstrate that networks suffer from local hot spots of spurious correlation in the neighborhood of hub species that engage in many interactions. We also identify topological features associated with keystone species in co-occurrence networks. This study provides a substantiated framework to guide environmental microbiologists in the construction and interpretation of co-occurrence networks from microbial survey datasets.

Deciphering microbial interactions and detecting keystone species with co-occurrence networks.

Science.gov (United States)

Berry, David; Widder, Stefanie

2014-01-01

Co-occurrence networks produced from microbial survey sequencing data are frequently used to identify interactions between community members. While this approach has potential to reveal ecological processes, it has been insufficiently validated due to the technical limitations inherent in studying complex microbial ecosystems. Here, we simulate multi-species microbial communities with known interaction patterns using generalized Lotka-Volterra dynamics. We then construct co-occurrence networks and evaluate how well networks reveal the underlying interactions and how experimental and ecological parameters can affect network inference and interpretation. We find that co-occurrence networks can recapitulate interaction networks under certain conditions, but that they lose interpretability when the effects of habitat filtering become significant. We demonstrate that networks suffer from local hot spots of spurious correlation in the neighborhood of hub species that engage in many interactions. We also identify topological features associated with keystone species in co-occurrence networks. This study provides a substantiated framework to guide environmental microbiologists in the construction and interpretation of co-occurrence networks from microbial survey datasets.

A gene regulatory network controlling hhex transcription in the anterior endoderm of the organizer

Science.gov (United States)

Rankin, Scott A.; Kormish, Jay; Kofron, Matt; Jegga, Anil; Zorn, Aaron M.

2011-01-01

The homeobox gene hhex is one of the earliest markers of the anterior endoderm, which gives rise to foregut organs such as the liver, ventral pancreas, thyroid, and lungs. The regulatory networks controlling hhex transcription are poorly understood. In an extensive cis-regulatory analysis of the Xenopus hhex promoter we determined how the Nodal, Wnt, and BMP pathways and their downstream transcription factors regulate hhex expression in the gastrula organizer. We show that Nodal signaling, present throughout the endoderm, directly activates hhex transcription via FoxH1/Smad2 binding sites in the proximal −0.44 Kb promoter. This positive action of Nodal is suppressed in the ventral-posterior endoderm by Vent 1 and Vent2, homeodomain repressors that are induced by BMP signaling. Maternal Wnt/β-catenin on the dorsal side of the embryo cooperates with Nodal and indirectly activate hhex expression via the homeodomain activators Siamois and Twin. Siamois/Twin stimulate hhex transcription through two mechanisms: 1) They induce the expression of Otx2 and Lim1 and together Siamois, Twin, Otx2 and Lim1 appear to promote hhex transcription through homeobox sites in a Wnt-responsive element located between −0.65 to −0.55 Kb of the hhex promoter. 2) Siamois/Twin also induce the expression of the BMP-antagonists Chordin and Noggin, which are required to exclude Vents from the organizer allowing hhex transcription. This work reveals a complex network regulating anterior endoderm transcription in the early embryo. PMID:21215263

Architecture of transcriptional regulatory circuits is knitted over the topology of bio-molecular interaction networks

DEFF Research Database (Denmark)

Soberano de Oliveira, Ana Paula; Patil, Kiran Raosaheb; Nielsen, Jens

2008-01-01

is to use the topology of bio-molecular interaction networks in order to constrain the solution space. Such approaches systematically integrate the existing biological knowledge with the 'omics' data. Results: Here we introduce a hypothesis-driven method that integrates bio-molecular network topology......Background: Uncovering the operating principles underlying cellular processes by using 'omics' data is often a difficult task due to the high-dimensionality of the solution space that spans all interactions among the bio-molecules under consideration. A rational way to overcome this problem...... with transcriptome data, thereby allowing the identification of key biological features (Reporter Features) around which transcriptional changes are significantly concentrated. We have combined transcriptome data with different biological networks in order to identify Reporter Gene Ontologies, Reporter Transcription...

Exploring the bZIP transcription factor regulatory network in Neurospora crassa.

Science.gov (United States)

Tian, Chaoguang; Li, Jingyi; Glass, N Louise

2011-03-01

Transcription factors (TFs) are key nodes of regulatory networks in eukaryotic organisms, including filamentous fungi such as Neurospora crassa. The 178 predicted DNA-binding TFs in N. crassa are distributed primarily among six gene families, which represent an ancient expansion in filamentous ascomycete genomes; 98 TF genes show detectable expression levels during vegetative growth of N. crassa, including 35 that show a significant difference in expression level between hyphae at the periphery versus hyphae in the interior of a colony. Regulatory networks within a species genome include paralogous TFs and their respective target genes (TF regulon). To investigate TF network evolution in N. crassa, we focused on the basic leucine zipper (bZIP) TF family, which contains nine members. We performed baseline transcriptional profiling during vegetative growth of the wild-type and seven isogenic, viable bZIP deletion mutants. We further characterized the regulatory network of one member of the bZIP family, NCU03905. NCU03905 encodes an Ap1-like protein (NcAp-1), which is involved in resistance to multiple stress responses, including oxidative and heavy metal stress. Relocalization of NcAp-1 from the cytoplasm to the nucleus was associated with exposure to stress. A comparison of the NcAp-1 regulon with Ap1-like regulons in Saccharomyces cerevisiae, Schizosaccharomyces pombe, Candida albicans and Aspergillus fumigatus showed both conservation and divergence. These data indicate how N. crassa responds to stress and provide information on pathway evolution.

Co-ordination of the International Network of Nuclear Structure and Decay Data Evaluators

Energy Technology Data Exchange (ETDEWEB)

Ricard-McCutchan, E. [Brookhaven National Lab. (BNL), Upton, NY (United States); Dimitriou, P. [Intl Atomic Energy Agency (IAEA), Vienna (Austria); Nichols, A. L. [Univ. of Surrey, Guildford (United Kingdom)

2015-08-01

The 21st meeting of the International Network of Nuclear Structure and Decay Data Evaluators was convened at the IAEA Headquarters, Vienna, from 20 to 24 April 2015 under the auspices of the IAEA Nuclear Data Section. This meeting was attended by 36 scientists from 15 Member States, plus IAEA staff, concerned with the compilation, evaluation and dissemination of nuclear structure and decay data. A summary of the meeting, data centre reports, various proposals considered, and actions agreed by the participants, as well as recommendations/conclusions are presented within this document.

Uncovering transcription factor and microRNA risk regulatory pathways associated with osteoarthritis by network analysis.

Science.gov (United States)

Song, Zhenhua; Zhang, Chi; He, Lingxiao; Sui, Yanfang; Lin, Xiafei; Pan, Jingjing

2018-05-01

Osteoarthritis (OA) is the most common form of joint disease. The development of inflammation have been considered to play a key role during the progression of OA. Regulatory pathways are known to play crucial roles in many pathogenic processes. Thus, deciphering these risk regulatory pathways is critical for elucidating the mechanisms underlying OA. We constructed an OA-specific regulatory network by integrating comprehensive curated transcription and post-transcriptional resource involving transcription factor (TF) and microRNA (miRNA). To deepen our understanding of underlying molecular mechanisms of OA, we developed an integrated systems approach to identify OA-specific risk regulatory pathways. In this study, we identified 89 significantly differentially expressed genes between normal and inflamed areas of OA patients. We found the OA-specific regulatory network was a standard scale-free network with small-world properties. It significant enriched many immune response-related functions including leukocyte differentiation, myeloid differentiation and T cell activation. Finally, 141 risk regulatory pathways were identified based on OA-specific regulatory network, which contains some known regulator of OA. The risk regulatory pathways may provide clues for the etiology of OA and be a potential resource for the discovery of novel OA-associated disease genes. Copyright © 2018 Elsevier Inc. All rights reserved.

The far and distal enhancers in the CYP3A4 gene co-ordinate the proximal promoter in responding similarly to the pregnane X receptor but differentially to hepatocyte nuclear factor-4alpha.

Science.gov (United States)

Liu, Fu-Jun; Song, Xiulong; Yang, Dongfang; Deng, Ruitang; Yan, Bingfang

2008-01-01

CYP3A4 (cytochrome P450 3A4) is involved in the metabolism of more than 50% of drugs and other xenobiotics. The expression of CYP3A4 is induced by many structurally dissimilar compounds. The PXR (pregnane X receptor) is recognized as a key regulator for the induction, and the PXR-directed transactivation of the CYP3A4 gene is achieved through a co-ordinated mechanism of the distal module with the proximal promoter. Recently, a far module was found to support constitutive expression of CYP3A4. The far module, like the distal module, is structurally clustered by a PXR response element (F-ER6) and elements recognized by HNF-4alpha (hepatocyte nuclear receptor-4alpha). We hypothesized that the far module supports PXR transactivation of the CYP3A4 gene. Consistent with the hypothesis, fusion of the far module to the proximal promoter of CYP3A4 markedly increased rifampicin-induced reporter activity. The increase was synergistically enhanced when both the far and distal modules were fused to the proximal promoter. The increase, however, was significantly reduced when the F-ER6 was disrupted. Chromatin immunoprecipitation detected the presence of PXR in the far module. Interestingly, HNF-4alpha increased the activity of the distal-proximal fused promoter, but decreased the activity of the far-proximal fused promoter. Given the fact that induction of CYP3A4 represents an important detoxification mechanism, the functional redundancy and synergistic interaction in supporting PXR transactivation suggest that the far and distal modules ensure the induction of CYP3A4 during chemical insults. The difference in responding to HNF-4alpha suggests that the magnitude of the induction is under control through various transcriptional networks.

Studying Dynamic Features in Myocardial Infarction Progression by Integrating miRNA-Transcription Factor Co-Regulatory Networks and Time-Series RNA Expression Data from Peripheral Blood Mononuclear Cells.

Directory of Open Access Journals (Sweden)

Hongbo Shi

Full Text Available Myocardial infarction (MI is a serious heart disease and a leading cause of mortality and morbidity worldwide. Although some molecules (genes, miRNAs and transcription factors (TFs associated with MI have been studied in a specific pathological context, their dynamic characteristics in gene expressions, biological functions and regulatory interactions in MI progression have not been fully elucidated to date. In the current study, we analyzed time-series RNA expression data from peripheral blood mononuclear cells. We observed that significantly differentially expressed genes were sharply up- or down-regulated in the acute phase of MI, and then changed slowly until the chronic phase. Biological functions involved at each stage of MI were identified. Additionally, dynamic miRNA-TF co-regulatory networks were constructed based on the significantly differentially expressed genes and miRNA-TF co-regulatory motifs, and the dynamic interplay of miRNAs, TFs and target genes were investigated. Finally, a new panel of candidate diagnostic biomarkers (STAT3 and ICAM1 was identified to have discriminatory capability for patients with or without MI, especially the patients with or without recurrent events. The results of the present study not only shed new light on the understanding underlying regulatory mechanisms involved in MI progression, but also contribute to the discovery of true diagnostic biomarkers for MI.

Co-ordinated research programme on benchmark study for the seismic analysis and testing of WWER-type nuclear power plants. V. 4B. Paks NPP: Analysis/testing. Working material

International Nuclear Information System (INIS)

1995-01-01

The Co-ordinated research programme on the benchmark study for the seismic analysis and testing of WWER-type nuclear power plants was initiated subsequent to the request from representatives of Member States. The conclusions adopted at the Technical Committee Meeting on Seismic Issues related to existing nuclear power plants held in Tokyo in 1991 called for the harmonization of methods and criteria used in Member States in issues related to seismic safety. The Consulltants' Meeting which followed resulted in producing a working document for CRP. It was decided that a benchmark study is the most effective way to achieve the principal objective. Two types of WWER reactors (WWER-440/213 and WWER-1000) were selected as prototypes for the benchmark exercise to be tested on a full scale using explosions and/or vibration generators. The two prototypes are Kozloduy Units 5/6 for WWER-1000 and Paks for WWER-440/213 nuclear power plants. This volume of Working material contains reports on dynamic study of the main building of the Paks NPP; shake table investigation at Paks NPP and the Final report of the Co-ordinated Research Programme

Measuring co-authorship and networking-adjusted scientific impact.

Directory of Open Access Journals (Sweden)

John P A Ioannidis

Full Text Available Appraisal of the scientific impact of researchers, teams and institutions with productivity and citation metrics has major repercussions. Funding and promotion of individuals and survival of teams and institutions depend on publications and citations. In this competitive environment, the number of authors per paper is increasing and apparently some co-authors don't satisfy authorship criteria. Listing of individual contributions is still sporadic and also open to manipulation. Metrics are needed to measure the networking intensity for a single scientist or group of scientists accounting for patterns of co-authorship. Here, I define I(1 for a single scientist as the number of authors who appear in at least I(1 papers of the specific scientist. For a group of scientists or institution, I(n is defined as the number of authors who appear in at least I(n papers that bear the affiliation of the group or institution. I(1 depends on the number of papers authored N(p. The power exponent R of the relationship between I(1 and N(p categorizes scientists as solitary (R>2.5, nuclear (R = 2.25-2.5, networked (R = 2-2.25, extensively networked (R = 1.75-2 or collaborators (R<1.75. R may be used to adjust for co-authorship networking the citation impact of a scientist. I(n similarly provides a simple measure of the effective networking size to adjust the citation impact of groups or institutions. Empirical data are provided for single scientists and institutions for the proposed metrics. Cautious adoption of adjustments for co-authorship and networking in scientific appraisals may offer incentives for more accountable co-authorship behaviour in published articles.

Atomic Energy Law with ordinances. 9. ed.

International Nuclear Information System (INIS)

Anon.

1982-01-01

The revised edition of the text is due to a variety of major changes in, and amendments to, the German Atomic Energy Law. This book includes the current version of the Atomic Energy Law which has been changed several times, the 1982-version of the ordinace concerning procedures laid down in the Atomic Energy Law, the 1976 radiation protection ordinance together with recent amendments, the 1973 X-ray ordinance, the 1977 financial security ordinance laid down in the Atomic Energy Law, the 1981 ordinance concerning costs, the ordinance concerning performance in anticipation of ultimate disposal. The book is a compilation of the basic Atomic Energy Law which is needed mostly for imminent practical requirements. (orig./HSCH) [de

The use of nuclear techniques in the management of nitrogen fixation by trees to enhance fertility of fragile tropical soils. Results of a co-ordinated research project

Energy Technology Data Exchange (ETDEWEB)

NONE

1998-11-01

The Joint FAO/IAEA Division of Nuclear Techniques in Food and Agriculture initiated in 1990 a Co-ordinated Research Project on The Use of Nuclear or Related Techniques in Management of Nitrogen Fixation by Trees for Enhancing Soil Fertility and Soil Conservation in Fragile Tropical Soils. This document contains nine papers referring to the results of the project. A separate abstract was prepared for each paper Refs, figs, tabs

Variations in CT determination of target volume with active breath co-ordinate in radiotherapy for post-operative gastric cancer.

Science.gov (United States)

Li, Gui-Chao; Zhang, Zhen; Ma, Xue-Jun; Yu, Xiao-Li; Hu, Wei-Gang; Wang, Jia-Zhou; Li, Qi-Wen; Liang, Li-Ping; Shen, Li-Jun; Zhang, Hui; Fan, Ming

2016-01-01

To investigate interobserver and inter-CT variations in using the active breath co-ordinate technique in the determination of clinical tumour volume (CTV) and normal organs in post-operative gastric cancer radiotherapy. Ten gastric cancer patients were enrolled in our study, and four radiation oncologists independently determined the CTVs and organs at risk based on the CT simulation data. To determine interobserver and inter-CT variation, we evaluated the maximum dimensions, derived volume and distance between the centres of mass (CMs) of the CTVs. We assessed the reliability in CTV determination among the observers by conformity index (CI). The average volumes ± standard deviation (cm(3)) of the CTV, liver, left kidney and right kidney were 674 ± 138 (range, 332-969), 1000 ± 138 (range, 714-1320), 149 ± 13 (range, 104-183) and 141 ± 21 (range, 110-186) cm(3), respectively. The average inter-CT distances between the CMs of the CTV, liver, left kidney and right kidney were 0.40, 0.56, 0.65 and 0.6 cm, respectively; the interobserver values were 0.98, 0.53, 0.16 and 0.15 cm, respectively. In the volume size of CTV for post-operative gastric cancer, there were significant variations among multiple observers, whereas there was no variation between different CTs. The slices in which variations more likely occur were the slices of the lower verge of the hilum of the spleen and porta hepatis, then the paraoesophageal lymph nodes region and abdominal aorta, and the inferior vena cava, and the variation in the craniocaudal orientation from the interobserver was more predominant than that from inter-CT. First, this is the first study to evaluate the interobserver and inter-CT variations in the determination of the CTV and normal organs in gastric cancer with the use of the active breath co-ordinate technique. Second, we analysed the region where variations most likely occur. Third, we investigated the influence of interobserver variation on

Patterns of subnet usage reveal distinct scales of regulation in the transcriptional regulatory network of Escherichia coli.

Directory of Open Access Journals (Sweden)

Carsten Marr

Full Text Available The set of regulatory interactions between genes, mediated by transcription factors, forms a species' transcriptional regulatory network (TRN. By comparing this network with measured gene expression data, one can identify functional properties of the TRN and gain general insight into transcriptional control. We define the subnet of a node as the subgraph consisting of all nodes topologically downstream of the node, including itself. Using a large set of microarray expression data of the bacterium Escherichia coli, we find that the gene expression in different subnets exhibits a structured pattern in response to environmental changes and genotypic mutation. Subnets with fewer changes in their expression pattern have a higher fraction of feed-forward loop motifs and a lower fraction of small RNA targets within them. Our study implies that the TRN consists of several scales of regulatory organization: (1 subnets with more varying gene expression controlled by both transcription factors and post-transcriptional RNA regulation and (2 subnets with less varying gene expression having more feed-forward loops and less post-transcriptional RNA regulation.

Single-cell Transcriptional Analysis Reveals Novel Neuronal Phenotypes and Interaction Networks involved In the Central Circadian Clock

Directory of Open Access Journals (Sweden)

James Park

2016-10-01

Full Text Available Single-cell heterogeneity confounds efforts to understand how a population of cells organizes into cellular networks that underlie tissue-level function. This complexity is prominent in the mammalian suprachiasmatic nucleus (SCN. Here, individual neurons exhibit a remarkable amount of asynchronous behavior and transcriptional heterogeneity. However, SCN neurons are able to generate precisely coordinated synaptic and molecular outputs that synchronize the body to a common circadian cycle by organizing into cellular networks. To understand this emergent cellular network property, it is important to reconcile single-neuron heterogeneity with network organization. In light of recent studies suggesting that transcriptionally heterogeneous cells organize into distinct cellular phenotypes, we characterized the transcriptional, spatial, and functional organization of 352 SCN neurons from mice experiencing phase-shifts in their circadian cycle. Using the community structure detection method and multivariate analytical techniques, we identified previously undescribed neuronal phenotypes that are likely to participate in regulatory networks with known SCN cell types. Based on the newly discovered neuronal phenotypes, we developed a data-driven neuronal network structure in which multiple cell types interact through known synaptic and paracrine signaling mechanisms. These results provide a basis from which to interpret the functional variability of SCN neurons and describe methodologies towards understanding how a population of heterogeneous single cells organizes into cellular networks that underlie tissue-level function.

Report on the 1st research co-ordination meeting of the co-ordinated research project on standardized high current solid targets for cyclotron production of diagnostic and therapeutic radionuclides

International Nuclear Information System (INIS)

2000-01-01

Radioisotopes produced with a cyclotron and their corresponding radiopharmaceuticals have already been shown to be extremely valuable in basic medical research, disease diagnosis and radiotherapy treatment. There are more than 200 cyclotron facilities worldwide and the number is growing every year. A number of the Member States have acquired cyclotrons for the purpose of producing radioisotopes for nuclear medicine and a number of others have expressed an interest in acquiring such facilities. This report is concerned with the production of four radiotracers: Iodine-123, Iodine-124, Thallium-201 and Palladium-103. Iodine-123 is already widely used in SPECT studies, I-124 has shown great promise and can be used for PET studies as well as in radiotherapy. Tl-201 is widely used throughout the world as 201 Tl + for measuring cardiac blood flow. It is a routine tool that is needed for the Nuclear Medicine communities and can be made available by those countries possessing a cyclotron facility with 30 MeV protons. Moreover, as preliminary results dealing with the labelling of chelated polypeptides with trivalent cationic Tl-201 are very promising; the nuclide can also be tried as a potential substitute for Indium tracers in SPECT diagnosis involving polypeptides. Palladium-103, an Auger electron emitter, has become an extremely important radionuclide for therapy. The Co-ordinated Research Programme (CRP) focuses on the optimisation and standardisation of solid phase cyclotron target technology for the production of I-123, I-124, Tl-201 and Pd-103. In particular, as originally proposed and further discussed and agreed upon during the 1st Research Co-ordination Meeting, the main technical goals of the CRP are described as follows: (i) to investigate the possibility of using electrodeposited tellurium and melted tellurium oxide as target material for the production of I-123 and I-124. For the oxide target, the following parameters and techniques will be explored: 1) methods

Pleiotropy constrains the evolution of protein but not regulatory sequences in a transcription regulatory network influencing complex social behaviours

Directory of Open Access Journals (Sweden)

Daria eMolodtsova

2014-12-01

Full Text Available It is increasingly apparent that genes and networks that influence complex behaviour are evolutionary conserved, which is paradoxical considering that behaviour is labile over evolutionary timescales. How does adaptive change in behaviour arise if behaviour is controlled by conserved, pleiotropic, and likely evolutionary constrained genes? Pleiotropy and connectedness are known to constrain the general rate of protein evolution, prompting some to suggest that the evolution of complex traits, including behaviour, is fuelled by regulatory sequence evolution. However, we seldom have data on the strength of selection on mutations in coding and regulatory sequences, and this hinders our ability to study how pleiotropy influences coding and regulatory sequence evolution. Here we use population genomics to estimate the strength of selection on coding and regulatory mutations for a transcriptional regulatory network that influences complex behaviour of honey bees. We found that replacement mutations in highly connected transcription factors and target genes experience significantly stronger negative selection relative to weakly connected transcription factors and targets. Adaptively evolving proteins were significantly more likely to reside at the periphery of the regulatory network, while proteins with signs of negative selection were near the core of the network. Interestingly, connectedness and network structure had minimal influence on the strength of selection on putative regulatory sequences for both transcription factors and their targets. Our study indicates that adaptive evolution of complex behaviour can arise because of positive selection on protein-coding mutations in peripheral genes, and on regulatory sequence mutations in both transcription factors and their targets throughout the network.

Social Host Ordinances and Policies. Prevention Update

Science.gov (United States)

Higher Education Center for Alcohol, Drug Abuse, and Violence Prevention, 2011

2011-01-01

Social host liability laws (also known as teen party ordinances, loud or unruly gathering ordinances, or response costs ordinances) target the location in which underage drinking takes place. Social host liability laws hold noncommercial individuals responsible for underage drinking events on property they own, lease, or otherwise control. They…

NFIA co-localizes with PPARγ and transcriptionally controls the brown fat gene program

DEFF Research Database (Denmark)

Hiraike, Yuta; Waki, Hironori; Yu, Jing

2017-01-01

. NFIA and the master transcriptional regulator of adipogenesis, PPARγ, co-localize at the brown-fat-specific enhancers. Moreover, the binding of NFIA precedes and facilitates the binding of PPARγ, leading to increased chromatin accessibility and active transcription. Introduction of NFIA into myoblasts...... results in brown adipocyte differentiation. Conversely, the brown fat of NFIA-knockout mice displays impaired expression of the brown-fat-specific genes and reciprocal elevation of muscle genes. Finally, expression of NFIA and the brown-fat-specific genes is positively correlated in human brown fat...

The Use of RNA Sequencing and Correlation Network Analysis to Study Potential Regulators of Crabapple Leaf Color Transformation.

Science.gov (United States)

Yang, Tuo; Li, Keting; Hao, Suxiao; Zhang, Jie; Song, Tingting; Tian, Ji; Yao, Yuncong

2018-05-01

Anthocyanins are plant pigments that contribute to the color of leaves, flowers and fruits, and that are beneficial to human health in the form of dietary antioxidants. The study of a transformable crabapple cultivar, 'India magic', which has red buds and green mature leaves, using mRNA profiling of four leaf developmental stages, allowed us to characterize molecular mechanisms regulating red color formation in early leaf development and the subsequent rapid down-regulation of anthocyanin biosynthesis. This analysis of differential gene expression during leaf development revealed that ethylene signaling-responsive genes are up-regulated during leaf pigmentation. Genes in the ethylene response factor (ERF), SPL, NAC, WRKY and MADS-box transcription factor (TF) families were identified in two weighted gene co-expression network analysis (WGCNA) modules as having a close relationship to anthocyanin accumulation. Analyses of network hub genes indicated that SPL TFs are located in central positions within anthocyanin-related modules. Furthermore, cis-motif and yeast one-hybrid assays suggested that several anthocyanin biosynthetic or regulatory genes are potential targets of SPL8 and SPL13B. Transient silencing of these two genes confirmed that they play a role in co-ordinating anthocyanin biosynthesis and crabapple leaf development. We present a high-resolution method for identifying regulatory modules associated with leaf pigmentation, which provides a platform for functional genomic studies of anthocyanin biosynthesis.

Processing ordinality and quantity: the case of developmental dyscalculia.

Directory of Open Access Journals (Sweden)

Orly Rubinsten

Full Text Available In contrast to quantity processing, up to date, the nature of ordinality has received little attention from researchers despite the fact that both quantity and ordinality are embodied in numerical information. Here we ask if there are two separate core systems that lie at the foundations of numerical cognition: (1 the traditionally and well accepted numerical magnitude system but also (2 core system for representing ordinal information. We report two novel experiments of ordinal processing that explored the relation between ordinal and numerical information processing in typically developing adults and adults with developmental dyscalculia (DD. Participants made "ordered" or "non-ordered" judgments about 3 groups of dots (non-symbolic numerical stimuli; in Experiment 1 and 3 numbers (symbolic task: Experiment 2. In contrast to previous findings and arguments about quantity deficit in DD participants, when quantity and ordinality are dissociated (as in the current tasks, DD participants exhibited a normal ratio effect in the non-symbolic ordinal task. They did not show, however, the ordinality effect. Ordinality effect in DD appeared only when area and density were randomized, but only in the descending direction. In the symbolic task, the ordinality effect was modulated by ratio and direction in both groups. These findings suggest that there might be two separate cognitive representations of ordinal and quantity information and that linguistic knowledge may facilitate estimation of ordinal information.

Processing ordinality and quantity: the case of developmental dyscalculia.

Science.gov (United States)

Rubinsten, Orly; Sury, Dana

2011-01-01

In contrast to quantity processing, up to date, the nature of ordinality has received little attention from researchers despite the fact that both quantity and ordinality are embodied in numerical information. Here we ask if there are two separate core systems that lie at the foundations of numerical cognition: (1) the traditionally and well accepted numerical magnitude system but also (2) core system for representing ordinal information. We report two novel experiments of ordinal processing that explored the relation between ordinal and numerical information processing in typically developing adults and adults with developmental dyscalculia (DD). Participants made "ordered" or "non-ordered" judgments about 3 groups of dots (non-symbolic numerical stimuli; in Experiment 1) and 3 numbers (symbolic task: Experiment 2). In contrast to previous findings and arguments about quantity deficit in DD participants, when quantity and ordinality are dissociated (as in the current tasks), DD participants exhibited a normal ratio effect in the non-symbolic ordinal task. They did not show, however, the ordinality effect. Ordinality effect in DD appeared only when area and density were randomized, but only in the descending direction. In the symbolic task, the ordinality effect was modulated by ratio and direction in both groups. These findings suggest that there might be two separate cognitive representations of ordinal and quantity information and that linguistic knowledge may facilitate estimation of ordinal information.

Consumer acceptance and market development of irradiated food in Asia and the Pacific. Proceedings of a final research co-ordination meeting

Energy Technology Data Exchange (ETDEWEB)

NONE

2001-05-01

This publication covers the activities and accomplishments of eight countries that participated in a Co-ordinated Research Project (CRP) on Public Acceptance and Market Development of Irradiated Food in Asia and the Pacific, as presented at a final Research Coordination Meeting held in Bangkok, 20-25 September 1998. The CRP was implemented through research agreements with Bangladesh, China (one each for Shanghai and Beijing), the Republic of Korea, Malaysia, Pakistan, the Philippines, Sri Lanka, Thailand and Viet Nam, from 1994 to 1998. The technical work undertaken to bring food irradiation technology to the marketplace to address food security, public health and trade needs, is described. This covered the establishment of quality assurance procedures, the determination of irradiation doses for nontraditional as well as traditional foods, the conduct of techno-economic feasibility, and the identification of industry and consumer needs. In the majority of cases, R and D activities were undertaken in partnership with industry. Developments in the establishment and harmonization of regulations on food irradiation were also monitored. The participants made commendable progress in the marketing of irradiated food and in the understanding and promotion of consumer acceptance of the technology. This was demonstrated in the marketing of close to 179,000 tons of different food and related products through normal trading channels. While the volume of food irradiated varied with the capacity of irradiation plants in participating countries, the work showed that consumers would accept irradiated foods and that trade benefits would ensue from the application of the technology. Information dissemination was found to be a critical factor in public acceptance. The discussions at the final Research Co-ordination Meeting, which are also summarized in this publication, focused on key issues and recommendations to bring about the wider commercialization of food irradiation for the

Consumer acceptance and market development of irradiated food in Asia and the Pacific. Proceedings of a final research co-ordination meeting

International Nuclear Information System (INIS)

2001-05-01

This publication covers the activities and accomplishments of eight countries that participated in a Co-ordinated Research Project (CRP) on Public Acceptance and Market Development of Irradiated Food in Asia and the Pacific, as presented at a final Research Coordination Meeting held in Bangkok, 20-25 September 1998. The CRP was implemented through research agreements with Bangladesh, China (one each for Shanghai and Beijing), the Republic of Korea, Malaysia, Pakistan, the Philippines, Sri Lanka, Thailand and Viet Nam, from 1994 to 1998. The technical work undertaken to bring food irradiation technology to the marketplace to address food security, public health and trade needs, is described. This covered the establishment of quality assurance procedures, the determination of irradiation doses for nontraditional as well as traditional foods, the conduct of techno-economic feasibility, and the identification of industry and consumer needs. In the majority of cases, R and D activities were undertaken in partnership with industry. Developments in the establishment and harmonization of regulations on food irradiation were also monitored. The participants made commendable progress in the marketing of irradiated food and in the understanding and promotion of consumer acceptance of the technology. This was demonstrated in the marketing of close to 179,000 tons of different food and related products through normal trading channels. While the volume of food irradiated varied with the capacity of irradiation plants in participating countries, the work showed that consumers would accept irradiated foods and that trade benefits would ensue from the application of the technology. Information dissemination was found to be a critical factor in public acceptance. The discussions at the final Research Co-ordination Meeting, which are also summarized in this publication, focused on key issues and recommendations to bring about the wider commercialization of food irradiation for the

Evaluation of Boulder, CO, SmartRegs Ordinance and Better Buildings Program

Energy Technology Data Exchange (ETDEWEB)

Arena, L.; Vijayakumar, G.

2012-04-01

Under the SmartRegs ordinance in the city of Boulder, Colorado, all rental properties in the city must achieve an energy efficiency level comparable to a HERS Index of approximately 120 points or lower by the year 2019. The City of Boulder received a $12 million grant from the DOE's Better Buildings initiative to create and incentivize their EnergySmart Program. In this report, the Consortium for Advanced Residential Buildings (CARB) describes its work with the program, including energy audits of rental properties, developing training programs for insulators and inspectors, and conducting interviews with property owners.

Evaluation of Boulder, CO,SmartRegs Ordinance and Better Buildings Program

Energy Technology Data Exchange (ETDEWEB)

Arena, L. [Consortium for Advanced Residential Buildings (CARB), Norwalk, CT (United States); Vijayakumar, G. [Consortium for Advanced Residential Buildings (CARB), Norwalk, CT (United States)

2012-04-01

Under the SmartRegs ordinance in the city of Boulder, Colorado, all rental properties in the city must achieve an energy efficiency level comparable to a HERS Index of approximately 120 points or lower by the year 2019. The City of Boulder received a $12 million grant from the DOE’s Better Buildings initiative to create and incentivize their EnergySmart Program. In this report, the Consortium for Advanced Residential Buildings (CARB) describes its work with the program, including energy audits of rental properties, developing training programs for insulators and inspectors, and conducting interviews with property owners.

Co-ordinated research programme on assessment of environmental exposure to mercury in selected human populations as studied by nuclear and other techniques. Report on the second research co-ordination meeting held in Kuala Lumpur, Malaysia, 24-28 August 1992

International Nuclear Information System (INIS)

1992-01-01

A Coordinated Research Programme (CRP) on assessment of environmental exposure to mercury in selected human populations as studied by nuclear and other techniques was initiated by the IAEA in 1990 in collaboration with WHO. The purpose of this CRP is to promote national and regional studies to evaluate the exposure of selected population groups to mercury and methylmercury and to estimate potential health risks in these groups. The programme is focused on the analysis of human head hair for the determination of mercury and methylmercury. This CRP has two main components: (i) identifying population groups that are at risk, and (ii) studying health effects in the exposed persons, particularly pregnant women and the babies born to them. This report contains the discussions held during the second Research Co-ordination Meeting (RCM) for the CRP which took place in Kuala Lumpur, Malaysia, under the sponsorship of the University Kebangsaan Malaysia and papers presented at this meeting. Refs, figs and tabs

Co-ordination of the international network of nuclear structure and decay data evaluation

International Nuclear Information System (INIS)

Lemmel, H.D.

1991-11-01

The IAEA Nuclear Data Section convened the ninth meeting of the international nuclear structure and decay data network at Kuwait, 10-14 March 1990. The meeting was attended by 19 scientists from 9 Member States and two international organizations, concerned with the compilation, evaluation, and dissemination of nuclear structure and decay data. The document contains a summary and the proceedings of the meeting, and in annexes, status reports of activities in nuclear structure and decay data from the participating centers. A separate abstract was prepared for one of the scientific lectures related to the topics of the meeting which is reproduced in full length. Refs, figs and tabs

TcoF-DB v2: update of the database of human and mouse transcription co-factors and transcription factor interactions

KAUST Repository

Schmeier, Sebastian; Alam, Tanvir; Essack, Magbubah; Bajic, Vladimir B.

2016-01-01

Transcription factors (TFs) play a pivotal role in transcriptional regulation, making them crucial for cell survival and important biological functions. For the regulation of transcription, interactions of different regulatory proteins known as transcription co-factors (TcoFs) and TFs are essential in forming necessary protein complexes. Although TcoFs themselves do not bind DNA directly, their influence on transcriptional regulation and initiation, although indirect, has been shown to be significant, with the functionality of TFs strongly influenced by the presence of TcoFs. In the TcoF-DB v2 database, we collect information on TcoFs. In this article, we describe updates and improvements implemented in TcoF-DB v2. TcoF-DB v2 provides several new features that enables exploration of the roles of TcoFs. The content of the database has significantly expanded, and is enriched with information from Gene Ontology, biological pathways, diseases and molecular signatures. TcoF-DB v2 now includes many more TFs; has substantially increased the number of human TcoFs to 958, and now includes information on mouse (418 new TcoFs). TcoF-DB v2 enables the exploration of information on TcoFs and allows investigations into their influence on transcriptional regulation in humans and mice. TcoF-DB v2 can be accessed at http://tcofdb.org/.

TcoF-DB v2: update of the database of human and mouse transcription co-factors and transcription factor interactions

KAUST Repository

Schmeier, Sebastian

2016-10-17

Transcription factors (TFs) play a pivotal role in transcriptional regulation, making them crucial for cell survival and important biological functions. For the regulation of transcription, interactions of different regulatory proteins known as transcription co-factors (TcoFs) and TFs are essential in forming necessary protein complexes. Although TcoFs themselves do not bind DNA directly, their influence on transcriptional regulation and initiation, although indirect, has been shown to be significant, with the functionality of TFs strongly influenced by the presence of TcoFs. In the TcoF-DB v2 database, we collect information on TcoFs. In this article, we describe updates and improvements implemented in TcoF-DB v2. TcoF-DB v2 provides several new features that enables exploration of the roles of TcoFs. The content of the database has significantly expanded, and is enriched with information from Gene Ontology, biological pathways, diseases and molecular signatures. TcoF-DB v2 now includes many more TFs; has substantially increased the number of human TcoFs to 958, and now includes information on mouse (418 new TcoFs). TcoF-DB v2 enables the exploration of information on TcoFs and allows investigations into their influence on transcriptional regulation in humans and mice. TcoF-DB v2 can be accessed at http://tcofdb.org/.

Application of DNA based marker mutations for improvement of cereals and other sexually reproduced crop plants. Proceedings of a final research co-ordination meeting

Energy Technology Data Exchange (ETDEWEB)

NONE

1998-03-01

The Co-ordinated Research Programme (CRP) on the Application of DNA Based Marker Mutations for Improvement of Cereals and Other Sexually Reproduced Crop Plants represents the first of three CRPs dealing with the application of molecular markers to mutations and plant breeding and was implemented between 1992 and 1996. A second companion CRP entitled Use of Novel DNA Fingerprinting Techniques for the Detection and Characterization of Genetic Variation in Vegetatively Propagated Crops devoted to the application of molecular markers in vegetatively propagated crops species was implemented between 1993 and 1997. One positive consequence of these two CRPs has been the implementation of a third CRP entitled Radioactively Labeled DNA Probes for Crop Improvement, which began in 1995 and aims to provide enabling technologies, in the form of probes and primers, to laboratories in developing countries. The rapid development of molecular marker technologies has also resulted in a dramatic increase in request from developing Member States for technical co-operation projects utilizing molecular markers to improve local varieties for biotic and abiotic stresses and other traits of relevance. With the intensified use of induced mutations in genetic studies, it will be important to continue the important work of understanding induced mutations at the molecular level. Evidence of the progress made in implementing molecular marker technologies in laboratories around the world is presented in this publication, which contains the results presented by the participants at the fourth and final Research Co-ordination Meeting of the CRP held in Vienna, 4-8 November 1996. The FAO and IAEA wish to express their sincere appreciation to the participants of the meeting for their work during the project period resulting in the summary and scientific reports presented in this publication. Refs, figs, tabs.

Application of DNA based marker mutations for improvement of cereals and other sexually reproduced crop plants. Proceedings of a final research co-ordination meeting

International Nuclear Information System (INIS)

1998-03-01

The Co-ordinated Research Programme (CRP) on the Application of DNA Based Marker Mutations for Improvement of Cereals and Other Sexually Reproduced Crop Plants represents the first of three CRPs dealing with the application of molecular markers to mutations and plant breeding and was implemented between 1992 and 1996. A second companion CRP entitled Use of Novel DNA Fingerprinting Techniques for the Detection and Characterization of Genetic Variation in Vegetatively Propagated Crops devoted to the application of molecular markers in vegetatively propagated crops species was implemented between 1993 and 1997. One positive consequence of these two CRPs has been the implementation of a third CRP entitled Radioactively Labeled DNA Probes for Crop Improvement, which began in 1995 and aims to provide enabling technologies, in the form of probes and primers, to laboratories in developing countries. The rapid development of molecular marker technologies has also resulted in a dramatic increase in request from developing Member States for technical co-operation projects utilizing molecular markers to improve local varieties for biotic and abiotic stresses and other traits of relevance. With the intensified use of induced mutations in genetic studies, it will be important to continue the important work of understanding induced mutations at the molecular level. Evidence of the progress made in implementing molecular marker technologies in laboratories around the world is presented in this publication, which contains the results presented by the participants at the fourth and final Research Co-ordination Meeting of the CRP held in Vienna, 4-8 November 1996. The FAO and IAEA wish to express their sincere appreciation to the participants of the meeting for their work during the project period resulting in the summary and scientific reports presented in this publication

Cross disease analysis of co-functional microRNA pairs on a reconstructed network of disease-gene-microRNA tripartite.

Science.gov (United States)

Peng, Hui; Lan, Chaowang; Zheng, Yi; Hutvagner, Gyorgy; Tao, Dacheng; Li, Jinyan

2017-03-24

MicroRNAs always function cooperatively in their regulation of gene expression. Dysfunctions of these co-functional microRNAs can play significant roles in disease development. We are interested in those multi-disease associated co-functional microRNAs that regulate their common dysfunctional target genes cooperatively in the development of multiple diseases. The research is potentially useful for human disease studies at the transcriptional level and for the study of multi-purpose microRNA therapeutics. We designed a computational method to detect multi-disease associated co-functional microRNA pairs and conducted cross disease analysis on a reconstructed disease-gene-microRNA (DGR) tripartite network. The construction of the DGR tripartite network is by the integration of newly predicted disease-microRNA associations with those relationships of diseases, microRNAs and genes maintained by existing databases. The prediction method uses a set of reliable negative samples of disease-microRNA association and a pre-computed kernel matrix instead of kernel functions. From this reconstructed DGR tripartite network, multi-disease associated co-functional microRNA pairs are detected together with their common dysfunctional target genes and ranked by a novel scoring method. We also conducted proof-of-concept case studies on cancer-related co-functional microRNA pairs as well as on non-cancer disease-related microRNA pairs. With the prioritization of the co-functional microRNAs that relate to a series of diseases, we found that the co-function phenomenon is not unusual. We also confirmed that the regulation of the microRNAs for the development of cancers is more complex and have more unique properties than those of non-cancer diseases.

A new method to construct co-author networks

Science.gov (United States)

Liu, Jie; Li, Yunpeng; Ruan, Zichan; Fu, Guangyuan; Chen, Xiaowu; Sadiq, Rehan; Deng, Yong

2015-02-01

In this paper, we propose a new method to evaluate the importance of nodes in a given network. The proposed method is based on the PageRank algorithm. However, we have made necessary improvements to combine the importance of the node itself and that of its community status. First, we propose an improved method to better evaluate the real impact of a paper. The proposed method calibrates the real influence of a paper over time. Then we propose a scheme of evaluating the contribution of each author in a paper. We later develop a new method to combine the information of the author itself and the structure of the co-author network. We use the number of co-authorship to calculate the effective distance between two authors, and evaluate the strength of their influence to each other with the law of gravity. The strength of influence is used to build a new network of authors, which is a comprehensive topological representation of both the quality of the node and its role in network. Finally, we apply our method to the Erdos co-author community and AMiner Citation Network to identify the most influential authors.

Seed maturation associated transcriptional programs and regulatory networks underlying genotypic difference in seed dormancy and size/weight in wheat (Triticum aestivum L.).

Science.gov (United States)

Yamasaki, Yuji; Gao, Feng; Jordan, Mark C; Ayele, Belay T

2017-09-16

Maturation forms one of the critical seed developmental phases and it is characterized mainly by programmed cell death, dormancy and desiccation, however, the transcriptional programs and regulatory networks underlying acquisition of dormancy and deposition of storage reserves during the maturation phase of seed development are poorly understood in wheat. The present study performed comparative spatiotemporal transcriptomic analysis of seed maturation in two wheat genotypes with contrasting seed weight/size and dormancy phenotype. The embryo and endosperm tissues of maturing seeds appeared to exhibit genotype-specific temporal shifts in gene expression profile that might contribute to the seed phenotypic variations. Functional annotations of gene clusters suggest that the two tissues exhibit distinct but genotypically overlapping molecular functions. Motif enrichment predicts genotypically distinct abscisic acid (ABA) and gibberellin (GA) regulated transcriptional networks contribute to the contrasting seed weight/size and dormancy phenotypes between the two genotypes. While other ABA responsive element (ABRE) motifs are enriched in both genotypes, the prevalence of G-box-like motif specifically in tissues of the dormant genotype suggests distinct ABA mediated transcriptional mechanisms control the establishment of dormancy during seed maturation. In agreement with this, the bZIP transcription factors that co-express with ABRE enriched embryonic genes differ with genotype. The enrichment of SITEIIATCYTC motif specifically in embryo clusters of maturing seeds irrespective of genotype predicts a tissue specific role for the respective TCP transcription factors with no or minimal contribution to the variations in seed dormancy. The results of this study advance our understanding of the seed maturation associated molecular mechanisms underlying variation in dormancy and weight/size in wheat seeds, which is a critical step towards the designing of molecular strategies

A single gene target of an ETS-family transcription factor determines neuronal CO2-chemosensitivity

DEFF Research Database (Denmark)

Brandt, Julia P; Aziz-Zaman, Sonya; Juozaityte, Vaida

2012-01-01

. We report here a mechanism that endows C. elegans neurons with the ability to detect CO(2). The ETS-5 transcription factor is necessary for the specification of CO(2)-sensing BAG neurons. Expression of a single ETS-5 target gene, gcy-9, which encodes a receptor-type guanylate cyclase, is sufficient...

Study of co-authorship network of papers in the Journal of Research in Medical Sciences using social network analysis

Directory of Open Access Journals (Sweden)

Firoozeh Zare-Farashbandi

2014-01-01

Full Text Available Background: Co-authorship is one of the most tangible forms of research collaboration. A co-authorship network is a social network in which the authors through participation in one or more publication through an indirect path have linked to each other. The present research using the social network analysis studied co-authorship network of 681 articles published in Journal of Research in Medical Sciences (JRMS during 2008-2012. Materials and Methods: The study was carried out with the scientometrics approach and using co-authorship network analysis of authors. The topology of the co-authorship network of 681 published articles in JRMS between 2008 and 2012 was analyzed using macro-level metrics indicators of network analysis such as density, clustering coefficient, components and mean distance. In addition, in order to evaluate the performance of each authors and countries in the network, the micro-level indicators such as degree centrality, closeness centrality and betweenness centrality as well as productivity index were used. The UCINET and NetDraw softwares were used to draw and analyze the co-authorship network of the papers. Results: The assessment of the authors productivity in this journal showed that the first ranks were belonged to only five authors, respectively. Furthermore, analysis of the co-authorship of the authors in the network demonstrated that in the betweenness centrality index, three authors of them had the good position in the network. They can be considered as the network leaders able to control the flow of information in the network compared with the other members based on the shortest paths. On the other hand, the key role of the network according to the productivity and centrality indexes was belonged to Iran, Malaysia and United States of America. Conclusion: Co-authorship network of JRMS has the characteristics of a small world network. In addition, the theory of 6° separation is valid in this network was also true.

Disentangling the co-structure of multilayer interaction networks: degree distribution and module composition in two-layer bipartite networks.

Science.gov (United States)

Astegiano, Julia; Altermatt, Florian; Massol, François

2017-11-13

Species establish different interactions (e.g. antagonistic, mutualistic) with multiple species, forming multilayer ecological networks. Disentangling network co-structure in multilayer networks is crucial to predict how biodiversity loss may affect the persistence of multispecies assemblages. Existing methods to analyse multilayer networks often fail to consider network co-structure. We present a new method to evaluate the modular co-structure of multilayer networks through the assessment of species degree co-distribution and network module composition. We focus on modular structure because of its high prevalence among ecological networks. We apply our method to two Lepidoptera-plant networks, one describing caterpillar-plant herbivory interactions and one representing adult Lepidoptera nectaring on flowers, thereby possibly pollinating them. More than 50% of the species established either herbivory or visitation interactions, but not both. These species were over-represented among plants and lepidopterans, and were present in most modules in both networks. Similarity in module composition between networks was high but not different from random expectations. Our method clearly delineates the importance of interpreting multilayer module composition similarity in the light of the constraints imposed by network structure to predict the potential indirect effects of species loss through interconnected modular networks.

TIGER: Toolbox for integrating genome-scale metabolic models, expression data, and transcriptional regulatory networks

Directory of Open Access Journals (Sweden)

Jensen Paul A

2011-09-01

Full Text Available Abstract Background Several methods have been developed for analyzing genome-scale models of metabolism and transcriptional regulation. Many of these methods, such as Flux Balance Analysis, use constrained optimization to predict relationships between metabolic flux and the genes that encode and regulate enzyme activity. Recently, mixed integer programming has been used to encode these gene-protein-reaction (GPR relationships into a single optimization problem, but these techniques are often of limited generality and lack a tool for automating the conversion of rules to a coupled regulatory/metabolic model. Results We present TIGER, a Toolbox for Integrating Genome-scale Metabolism, Expression, and Regulation. TIGER converts a series of generalized, Boolean or multilevel rules into a set of mixed integer inequalities. The package also includes implementations of existing algorithms to integrate high-throughput expression data with genome-scale models of metabolism and transcriptional regulation. We demonstrate how TIGER automates the coupling of a genome-scale metabolic model with GPR logic and models of transcriptional regulation, thereby serving as a platform for algorithm development and large-scale metabolic analysis. Additionally, we demonstrate how TIGER's algorithms can be used to identify inconsistencies and improve existing models of transcriptional regulation with examples from the reconstructed transcriptional regulatory network of Saccharomyces cerevisiae. Conclusion The TIGER package provides a consistent platform for algorithm development and extending existing genome-scale metabolic models with regulatory networks and high-throughput data.

Temporal dynamics and transcriptional control using single-cell gene expression analysis.

Science.gov (United States)

Kouno, Tsukasa; de Hoon, Michiel; Mar, Jessica C; Tomaru, Yasuhiro; Kawano, Mitsuoki; Carninci, Piero; Suzuki, Harukazu; Hayashizaki, Yoshihide; Shin, Jay W

2013-01-01

Changes in environmental conditions lead to expression variation that manifest at the level of gene regulatory networks. Despite a strong understanding of the role noise plays in synthetic biological systems, it remains unclear how propagation of expression heterogeneity in an endogenous regulatory network is distributed and utilized by cells transitioning through a key developmental event. Here we investigate the temporal dynamics of a single-cell transcriptional network of 45 transcription factors in THP-1 human myeloid monocytic leukemia cells undergoing differentiation to macrophages. We systematically measure temporal regulation of expression and variation by profiling 120 single cells at eight distinct time points, and infer highly controlled regulatory modules through which signaling operates with stochastic effects. This reveals dynamic and specific rewiring as a cellular strategy for differentiation. The integration of both positive and negative co-expression networks further identifies the proto-oncogene MYB as a network hinge to modulate both the pro- and anti-differentiation pathways. Compared to averaged cell populations, temporal single-cell expression profiling provides a much more powerful technique to probe for mechanistic insights underlying cellular differentiation. We believe that our approach will form the basis of novel strategies to study the regulation of transcription at a single-cell level.

A guide to practical radiation protection in medicine. X-Ray Ordinance. Radiation Protection Ordinance. Practice-oriented hints, comments, text compilation

International Nuclear Information System (INIS)

Fiebich, M.; Nischelsky, J.E.; Pfeiff, H.; Westermann, K.

2003-01-01

This loose-leaf collection has been compiled for users who have to implement the X-ray Ordinance and the Radiation Protection Ordinance at their place of work. It presents all acts, ordinances, safety guides, regulations and recommendations of relevance in connection with the above two ordinances, as well as practical instructions and the full text of technical codes. Radiation protection officers and other persons in charge of radiation protection will find the references, information and advice needed to solve problems encountered. (orig.) [de

Breast cancer publication network: profile of co-authorship and co-organization.

Science.gov (United States)

Biglu, Mohammad-Hossein; Abotalebi, Parvaneh; Ghavami, Mostafa

2016-01-01

Introduction: Breast cancer is one of the highest reasons of deaths for people in the world. The objective of current study is to analyze and visualize the trend of global scientific activities in the field of breast cancer during a period of 10 years through 2006-2015. Methods: The current study was performed by utilizing the scientometrics analysis and mapping the co-authorship and co-organization networks. The Web of Science Core Collection (WoS-CC)database was used to extract all papers indexed as a topic of breast cancer through 2006 to 2015. Research productivity was measured through analysis several parameters, including: the number and time course of publications, the journal and language of publications, the frequency and type of publications, as well as top 20 active sub-categories together with country contribution. The extracted data were transferred into the Excel charts and plotted as diagrams. The Science of Science (Sci2) and CiteSpace softwares were used as tools for mapping the co-authorship and co-organization networks of the published papers. Results: Analysis of data indicated that the number of publications in the field of breast cancer has linearly increased and correlated with the time-course of the study. The number of publication indexed in WoS-CC in 2015 was two times greater than that of 2006, which reached from 15 229 documents in 2006 to 30 667 documents in 2015. English Language accounted for 98% of total publications as the most dominant language. The vast majority of publications' type was in the form of original journal articles (64.7%). Based on Bradford scatterings law, the journal of "Cancer Research" was the most productive journal among the core journals, while the USA, China, and England were the most prolific countries in the field. The co-organization network indicated the dominant role of Harvard University in the field. Conclusion: The integrity of network indicated that scientists in the field of breast cancer

Radiation synthesis and modification of polymers for biomedical applications. Final results of a co-ordinated research project. 1996-2000

CERN Document Server

2002-01-01

Radiation techniques are being used for synthesis of hydrogels, functional polymers, interpenetrating systems, chemical modification of surfaces, immobilization of bioactive materials, synthesis of functional micro- and nanospheres and processing of naturally derived biomaterials. Potential medical applications of these biomaterials include implants, topical dressings, treatment devices and drug delivery systems. Biotechnological applications include diagnostic assays, separation and purification systems, immobilized enzyme and cell bioprocesses and cell culture surfaces. The main objective of the CRP on The use of Radiation Processing to Prepare Biomaterials for Application in Medicine was to co-ordinate the research carried out in the participating countries, to ensure that different research programmes complement each other and the information exchange is available to all. Furthermore, the objective was to expand the use of ionizing radiation in two major areas: synthesis of polymers and gels for medical a...

Regulation of a transcription factor network by Cdk1 coordinates late cell cycle gene expression.

Science.gov (United States)

Landry, Benjamin D; Mapa, Claudine E; Arsenault, Heather E; Poti, Kristin E; Benanti, Jennifer A

2014-05-02

To maintain genome stability, regulators of chromosome segregation must be expressed in coordination with mitotic events. Expression of these late cell cycle genes is regulated by cyclin-dependent kinase (Cdk1), which phosphorylates a network of conserved transcription factors (TFs). However, the effects of Cdk1 phosphorylation on many key TFs are not known. We find that elimination of Cdk1-mediated phosphorylation of four S-phase TFs decreases expression of many late cell cycle genes, delays mitotic progression, and reduces fitness in budding yeast. Blocking phosphorylation impairs degradation of all four TFs. Consequently, phosphorylation-deficient mutants of the repressors Yox1 and Yhp1 exhibit increased promoter occupancy and decreased expression of their target genes. Interestingly, although phosphorylation of the transcriptional activator Hcm1 on its N-terminus promotes its degradation, phosphorylation on its C-terminus is required for its activity, indicating that Cdk1 both activates and inhibits a single TF. We conclude that Cdk1 promotes gene expression by both activating transcriptional activators and inactivating transcriptional repressors. Furthermore, our data suggest that coordinated regulation of the TF network by Cdk1 is necessary for faithful cell division.

Analysis of co-occurrence toponyms in web pages based on complex networks

Science.gov (United States)

Zhong, Xiang; Liu, Jiajun; Gao, Yong; Wu, Lun

2017-01-01

A large number of geographical toponyms exist in web pages and other documents, providing abundant geographical resources for GIS. It is very common for toponyms to co-occur in the same documents. To investigate these relations associated with geographic entities, a novel complex network model for co-occurrence toponyms is proposed. Then, 12 toponym co-occurrence networks are constructed from the toponym sets extracted from the People's Daily Paper documents of 2010. It is found that two toponyms have a high co-occurrence probability if they are at the same administrative level or if they possess a part-whole relationship. By applying complex network analysis methods to toponym co-occurrence networks, we find the following characteristics. (1) The navigation vertices of the co-occurrence networks can be found by degree centrality analysis. (2) The networks express strong cluster characteristics, and it takes only several steps to reach one vertex from another one, implying that the networks are small-world graphs. (3) The degree distribution satisfies the power law with an exponent of 1.7, so the networks are free-scale. (4) The networks are disassortative and have similar assortative modes, with assortative exponents of approximately 0.18 and assortative indexes less than 0. (5) The frequency of toponym co-occurrence is weakly negatively correlated with geographic distance, but more strongly negatively correlated with administrative hierarchical distance. Considering the toponym frequencies and co-occurrence relationships, a novel method based on link analysis is presented to extract the core toponyms from web pages. This method is suitable and effective for geographical information retrieval.

The new German radiation protection ordinance

International Nuclear Information System (INIS)

Pfeffer, W.; Weimer, G.

2003-01-01

According to European law, the Basic Safety Standards (BSS) published by the European Council in 1996 and the Council Directive on health protection of individuals against dangers of ionising radiation in relation to medical exposure had to be transferred into national law within due time. In 2001 the new Ordinance for the Implementation of the Euratom Guidelines on Radiation Protection] was published, which replaces the old Radiation Protection Ordinance. The new German Ordinance adapts the European Directive to German law, covering the general principles but even giving more details in many fields of radiation protection. The BSS scope certainly is much broader than the prescriptions important for the field of radiation protection in nuclear power plants. According to the scope of this workshop on occupational exposure in nuclear power plants - and as the BSS most probably will be quite familiar to all of you - after a short general overview on relevant contents of the German Ordinance, this presentation will focus on the main issues important in the operation of NPP and especially on some areas which may give rise to necessary changes caused by the new Ordinance. (A.L.B.)

Innovations and networking fostering tourist destination development in Slovakia

Directory of Open Access Journals (Sweden)

Gajdošík Tomáš

2017-12-01

Full Text Available The paper focuses on the implementation of innovations and networking in the sector of tourism in two Slovak mountain destinations of international significance. The main objective of the paper is to identify and evaluate how innovations and networking contribute to tourist destination development in Slovakia. The implementation of institutional innovation resulted in the establishment of formal and informal networks. The developed networks consist of representatives of all sectors co-ordinating all relevant stakeholders. Formal and informal networks and the collaboration among stakeholders have launched other types of innovations in the tourism sector. The interactions and intensity of relations among stakeholders are analysed by network analysis. Destinations are compared with the network of the same size and density through quantitative network characteristics. Based on empirical research we investigate the impact of networks and innovations on tourist destination development. Due to the synergy effect of networking and implementation of multiple innovations, tourist destination development is observed.

Comparative transcriptome and gene co-expression network analysis reveal genes and signaling pathways adaptively responsive to varied adverse stresses in the insect fungal pathogen, Beauveria bassiana.

Science.gov (United States)

He, Zhangjiang; Zhao, Xin; Lu, Zhuoyue; Wang, Huifang; Liu, Pengfei; Zeng, Fanqin; Zhang, Yongjun

2018-01-01

Sensing, responding, and adapting to the surrounding environment are crucial for all living organisms to survive, proliferate, and differentiate in their biological niches. Beauveria bassiana is an economically important insect-pathogenic fungus which is widely used as a biocontrol agent to control a variety of insect pests. The fungal pathogen unavoidably encounters a variety of adverse environmental stresses and defense response from the host insects during application of the fungal agents. However, few are known about the transcription response of the fungus to respond or adapt varied adverse stresses. Here, we comparatively analyzed the transcriptome of B. bassiana in globe genome under the varied stationary-phase stresses including osmotic agent (0.8 M NaCl), high temperature (32 °C), cell wall-perturbing agent (Congo red), and oxidative agents (H 2 O 2 or menadione). Total of 12,412 reads were obtained, and mapped to the 6767 genes of the B. bassiana. All of these stresses caused transcription responses involved in basal metabolism, cell wall construction, stress response or cell rescue/detoxification, signaling transduction and gene transcription regulation, and likely other cellular processes. An array of genes displayed similar transcription patterns in response to at least two of the five stresses, suggesting a shared transcription response to varied adverse stresses. Gene co-expression network analysis revealed that mTOR signaling pathway, but not HOG1 MAP kinase pathway, played a central role in regulation the varied adverse stress responses, which was verified by RNAi-mediated knockdown of TOR1. Our findings provided an insight of transcription response and gene co-expression network of B. bassiana in adaptation to varied environments. Copyright © 2017 Elsevier Inc. All rights reserved.

Co-opetition and knowledge co-creation in Japanese supplier-networks : The case of Toyota

NARCIS (Netherlands)

Wilhelm, Miriam M.; Kohlbacher, Florian

This article examines how knowledge co-creation takes place within the Toyota network. We extend the work of Dyer and Nobeoka, who contributed to the theory of network-level learning by showing how Toyota succeeded in 'creating and managing a high-performance knowledge-sharing network'. By examining

Overview of Existing Wind Energy Ordinances

Energy Technology Data Exchange (ETDEWEB)

Oteri, F.

2008-12-01

Due to increased energy demand in the United States, rural communities with limited or no experience with wind energy now have the opportunity to become involved in this industry. Communities with good wind resources may be approached by entities with plans to develop the resource. Although these opportunities can create new revenue in the form of construction jobs and land lease payments, they also create a new responsibility on the part of local governments to ensure that ordinances will be established to aid the development of safe facilities that will be embraced by the community. The purpose of this report is to educate and engage state and local governments, as well as policymakers, about existing large wind energy ordinances. These groups will have a collection of examples to utilize when they attempt to draft a new large wind energy ordinance in a town or county without existing ordinances.

Co-ordinated functions of Mms proteins define the surface structure of cubo-octahedral magnetite crystals in magnetotactic bacteria.

Science.gov (United States)

Arakaki, Atsushi; Yamagishi, Ayana; Fukuyo, Ayumi; Tanaka, Masayoshi; Matsunaga, Tadashi

2014-08-01

Magnetotactic bacteria synthesize magnetosomes comprised of membrane-enveloped single crystalline magnetite (Fe3 O4 ). The size and morphology of the nano-sized magnetite crystals (Mms (Mms5, Mms6, Mms7, and Mms13), was previously isolated from the surface of cubo-octahedral magnetite crystals in Magnetospirillum magneticum strain AMB-1. Analysis of an mms6 gene deletion mutant suggested that the Mms6 protein plays a major role in the regulation of magnetite crystal size and morphology. In this study, we constructed various mms gene deletion mutants and characterized the magnetite crystals formed by the mutant strains. Comparative analysis showed that all mms genes were involved in the promotion of crystal growth in different manners. The phenotypic characterization of magnetites also suggested that these proteins are involved in controlling the geometries of the crystal surface structures. Thus, the co-ordinated functions of Mms proteins regulate the morphology of the cubo-octahedral magnetite crystals in magnetotactic bacteria. © 2014 John Wiley & Sons Ltd.

Spatial Representation of Ordinal Information

Directory of Open Access Journals (Sweden)

Meng eZhang

2016-04-01

Full Text Available Right hand responds faster than left hand when shown larger numbers and vice-versa when shown smaller numbers (the SNARC effect. Accumulating evidence suggests that the SNARC effect may not be exclusive for numbers and can be extended to other ordinal sequences (e.g., months or letters in the alphabet as well. In this study, we tested the SNARC effect with a non-numerically ordered sequence: The Chinese notations for the color spectrum (Red, Orange, Yellow, Green, Blue, Indigo, and Violet. Chinese color word sequence reserves relatively weak ordinal information, because each element color in the sequence normally appears in non-sequential contexts, making it ideal to test the spatial organization of sequential information that was stored in the long-term memory. This study found a reliable SNARC-like effect for Chinese color words (deciding whether the presented color word was before or after the reference color word green, suggesting that, without access to any quantitative information or exposure to any previous training, ordinal representation can still activate a sense of space. The results support that weak ordinal information without quantitative magnitude encoded in the long-term memory can activate spatial representation in a comparison task.

Spatial Representation of Ordinal Information.