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Sample records for co-authorship network analysis

  1. Study of co-authorship network of papers in the Journal of Research in Medical Sciences using social network analysis

    Directory of Open Access Journals (Sweden)

    Firoozeh Zare-Farashbandi

    2014-01-01

    Full Text Available Background: Co-authorship is one of the most tangible forms of research collaboration. A co-authorship network is a social network in which the authors through participation in one or more publication through an indirect path have linked to each other. The present research using the social network analysis studied co-authorship network of 681 articles published in Journal of Research in Medical Sciences (JRMS during 2008-2012. Materials and Methods: The study was carried out with the scientometrics approach and using co-authorship network analysis of authors. The topology of the co-authorship network of 681 published articles in JRMS between 2008 and 2012 was analyzed using macro-level metrics indicators of network analysis such as density, clustering coefficient, components and mean distance. In addition, in order to evaluate the performance of each authors and countries in the network, the micro-level indicators such as degree centrality, closeness centrality and betweenness centrality as well as productivity index were used. The UCINET and NetDraw softwares were used to draw and analyze the co-authorship network of the papers. Results: The assessment of the authors productivity in this journal showed that the first ranks were belonged to only five authors, respectively. Furthermore, analysis of the co-authorship of the authors in the network demonstrated that in the betweenness centrality index, three authors of them had the good position in the network. They can be considered as the network leaders able to control the flow of information in the network compared with the other members based on the shortest paths. On the other hand, the key role of the network according to the productivity and centrality indexes was belonged to Iran, Malaysia and United States of America. Conclusion: Co-authorship network of JRMS has the characteristics of a small world network. In addition, the theory of 6° separation is valid in this network was also true.

  2. Visualization and Analysis of the Co-authorship Network of Articles of National Congress on “Family Pathology” Using Social Network Analysis Indicators

    OpenAIRE

    امیررضا اصنافی; الهه حسینی; سارا آمایه

    2017-01-01

    The present paper aims to visualize and analyze the co-authorship network of articles of national congress on family pathology using social network analysis (SNA) indicators. The present paper employed the descriptive research method with scientometrics approach and analyzed social network by micro and macro indicators. UCINET software was used to visualize and analyze the co-authorship network, and VOS viewer software was utilized to visualize a density network of the co-authorship. The 6th ...

  3. Research Activity in Computational Physics utilizing High Performance Computing: Co-authorship Network Analysis

    Science.gov (United States)

    Ahn, Sul-Ah; Jung, Youngim

    2016-10-01

    The research activities of the computational physicists utilizing high performance computing are analyzed by bibliometirc approaches. This study aims at providing the computational physicists utilizing high-performance computing and policy planners with useful bibliometric results for an assessment of research activities. In order to achieve this purpose, we carried out a co-authorship network analysis of journal articles to assess the research activities of researchers for high-performance computational physics as a case study. For this study, we used journal articles of the Scopus database from Elsevier covering the time period of 2004-2013. We extracted the author rank in the physics field utilizing high-performance computing by the number of papers published during ten years from 2004. Finally, we drew the co-authorship network for 45 top-authors and their coauthors, and described some features of the co-authorship network in relation to the author rank. Suggestions for further studies are discussed.

  4. Measuring co-authorship and networking-adjusted scientific impact.

    Directory of Open Access Journals (Sweden)

    John P A Ioannidis

    Full Text Available Appraisal of the scientific impact of researchers, teams and institutions with productivity and citation metrics has major repercussions. Funding and promotion of individuals and survival of teams and institutions depend on publications and citations. In this competitive environment, the number of authors per paper is increasing and apparently some co-authors don't satisfy authorship criteria. Listing of individual contributions is still sporadic and also open to manipulation. Metrics are needed to measure the networking intensity for a single scientist or group of scientists accounting for patterns of co-authorship. Here, I define I(1 for a single scientist as the number of authors who appear in at least I(1 papers of the specific scientist. For a group of scientists or institution, I(n is defined as the number of authors who appear in at least I(n papers that bear the affiliation of the group or institution. I(1 depends on the number of papers authored N(p. The power exponent R of the relationship between I(1 and N(p categorizes scientists as solitary (R>2.5, nuclear (R = 2.25-2.5, networked (R = 2-2.25, extensively networked (R = 1.75-2 or collaborators (R<1.75. R may be used to adjust for co-authorship networking the citation impact of a scientist. I(n similarly provides a simple measure of the effective networking size to adjust the citation impact of groups or institutions. Empirical data are provided for single scientists and institutions for the proposed metrics. Cautious adoption of adjustments for co-authorship and networking in scientific appraisals may offer incentives for more accountable co-authorship behaviour in published articles.

  5. [Co-authorship and Spanish pediatric scientific collaboration networks (2006-2010)].

    Science.gov (United States)

    Aleixandre Benavent, R; González de Dios, J; Alonso Arroyo, A; Bolaños Pizarro, M; Castelló Cogollos, L; González Alcaide, G; Vidal Infer, A; Navarro Molina, C; Coronado Ferrer, S; González Muñoz, M; Málaga Guerrero, S

    2013-06-01

    Scientific collaboration is very important, as it is the basis of the scientific development of every discipline. The aim of this paper is to identify the indicators of scientific collaboration and co-authorship networks of Spanish researchers and institutions publishing in national and international paediatric, multidisciplinary or other knowledge areas journals during the period 2006-2010. The papers studied were obtained from the databases including, Science Citation Index Expanded, Scopus, Índice Médico Español and Índice Bibliográfico Español en Ciencias de la Salud, by means of applying different search profiles. All the papers signed by co-authors were quantified in order to identify the authorship and institutional collaboration networks. Furthermore the degree, betweenness index, and closeness index were obtained as a measurement of the structural analysis. Co-authorships were represented graphically by the network analysis and display software Pajek. A total of 7971 articles were published during the period 2006-2010, with 90.55% completed in collaboration. Using a threshold of 10 or more co-authorships, 77 research groups in Pediatrics were identified. Most papers were published in collaboration between institutions of the same Autonomous Community (42.28%), and 14.84% with international collaboration. The analysis of institutional participation enabled a large nucleus or institutional collaboration network to be identified, with 52 linked institutions. International collaboration was led by the USA and European countries, such as United Kingdom, Germany and Italy. Authors, institutions and the most active working groups in Spanish pediatrics were identified, which is very interesting information to establish contacts to increase the existing networks, to prevent redundancies, and to take advantage of the new emerging groups. It is necessary to promote the collaboration of Spanish researchers, especially with their international colleagues, since a

  6. A Survey on Density and Size of Co-authorship Networks in Information Science Journals

    OpenAIRE

    Faramarz Soheili; Farideh Osareh

    2014-01-01

    Scientific collaboration has always been of interest to researchers. The analyses of data relating to scientific collaboration is one of the techniques by which we can evaluate research activities. Co-authorship network analysis can represent good information regarding the patterns and structures of co-authorship. Social network analysis was used as the research method. The research population included twenty journals of Information Science which had an impact factor of 0...

  7. Growth and structure of authorship and co-authorship network in the strategic management realm: Evidence from the Strategic Management Journal

    OpenAIRE

    Mehmet Ali Koseoglu

    2016-01-01

    The main objective of this study is to investigate the intellectual structure and evolution of author collaborations from articles published in the Strategic Management Journal between 1980 and 2014. This assessment includes the general view of authorship, authorship patterns, author productivity, ranking of authors, visualization of the co-authorship network, comparison of strategic management co-authorship network attributes with those of other disciplines, the evolution of main components ...

  8. Social Network: a Cytoscape app for visualizing co-authorship networks.

    Science.gov (United States)

    Kofia, Victor; Isserlin, Ruth; Buchan, Alison M J; Bader, Gary D

    2015-01-01

    Networks that represent connections between individuals can be valuable analytic tools. The Social Network Cytoscape app is capable of creating a visual summary of connected individuals automatically. It does this by representing relationships as networks where each node denotes an individual and an edge linking two individuals represents a connection. The app focuses on creating visual summaries of individuals connected by co-authorship links in academia, created from bibliographic databases like PubMed, Scopus and InCites. The resulting co-authorship networks can be visualized and analyzed to better understand collaborative research networks or to communicate the extent of collaboration and publication productivity among a group of researchers, like in a grant application or departmental review report. It can also be useful as a research tool to identify important research topics, researchers and papers in a subject area.

  9. Measuring co-authorship and networking-adjusted scientific impact.

    Science.gov (United States)

    Ioannidis, John P A

    2008-07-23

    Appraisal of the scientific impact of researchers, teams and institutions with productivity and citation metrics has major repercussions. Funding and promotion of individuals and survival of teams and institutions depend on publications and citations. In this competitive environment, the number of authors per paper is increasing and apparently some co-authors don't satisfy authorship criteria. Listing of individual contributions is still sporadic and also open to manipulation. Metrics are needed to measure the networking intensity for a single scientist or group of scientists accounting for patterns of co-authorship. Here, I define I(1) for a single scientist as the number of authors who appear in at least I(1) papers of the specific scientist. For a group of scientists or institution, I(n) is defined as the number of authors who appear in at least I(n) papers that bear the affiliation of the group or institution. I(1) depends on the number of papers authored N(p). The power exponent R of the relationship between I(1) and N(p) categorizes scientists as solitary (R>2.5), nuclear (R = 2.25-2.5), networked (R = 2-2.25), extensively networked (R = 1.75-2) or collaborators (Raccountable co-authorship behaviour in published articles.

  10. The evolution of your success lies at the centre of your co-authorship network.

    Directory of Open Access Journals (Sweden)

    Sandra Servia-Rodríguez

    Full Text Available Collaboration among scholars and institutions is progressively becoming essential to the success of research grant procurement and to allow the emergence and evolution of scientific disciplines. Our work focuses on analysing if the volume of collaborations of one author together with the relevance of his collaborators is somewhat related to his research performance over time. In order to prove this relation we collected the temporal distributions of scholars' publications and citations from the Google Scholar platform and the co-authorship network (of Computer Scientists underlying the well-known DBLP bibliographic database. By the application of time series clustering, social network analysis and non-parametric statistics, we observe that scholars with similar publications (citations patterns also tend to have a similar centrality in the co-authorship network. To our knowledge, this is the first work that considers success evolution with respect to co-authorship.

  11. An Analysis of Co-Authorship Network in the Iranian Sociology

    OpenAIRE

    2015-01-01

    Introduction   Among written academic collaborations, collaborating on writing scientific, research papers have a privileged position. It can show the rate of scientific development in any specialized discipline. T his study investigated the development of sociology in Iran through analyzing the co-authorship network in three main journal of "Iranian Journal of Sociology "," Sociological Studies " (a former Journal of Social Science) and "Quarterly Journal of Social S...

  12. A comparative study on the reliability of co-authorship networks with emphases on edges and nodes

    Directory of Open Access Journals (Sweden)

    Sandra Cristina de Oliveira

    2016-06-01

    Full Text Available A scientific co-authorship network may be modeled by a graph G composed of k nodes and m edges. Researchers that make up this network may be interpreted as its nodes and the link between these agents (co-authored papers as its edges. Current work evaluated and compared the reliability measure of networks with two emphases: 1 On nodes (perfectly reliable edges and 2 On edges (perfectly reliable nodes. Specifically, the reliability of a fictitious co-authorship network at a given time t was analyzed taking into account, first, the reliability of nodes (researchers equal and different, and, second, the reliability of edges (co-authorship relations, equal and different. Additionally, centrality measures of nodes were obtained to identify situations where the insertion of an edge significantly increased the reliability of the network. Results showed that the reliability of the co-authorship network focusing on edges is more sensitive to changes in individual reliabilities than the reliability of the network focusing on nodes. Additionally, the use of centrality measures was viable to identify possible insertions of edges or co-authorship relations to increase the reliability of the network in the two approaches.

  13. Breast cancer publication network: profile of co-authorship and co-organization.

    Science.gov (United States)

    Biglu, Mohammad-Hossein; Abotalebi, Parvaneh; Ghavami, Mostafa

    2016-01-01

    Introduction: Breast cancer is one of the highest reasons of deaths for people in the world. The objective of current study is to analyze and visualize the trend of global scientific activities in the field of breast cancer during a period of 10 years through 2006-2015. Methods: The current study was performed by utilizing the scientometrics analysis and mapping the co-authorship and co-organization networks. The Web of Science Core Collection (WoS-CC)database was used to extract all papers indexed as a topic of breast cancer through 2006 to 2015. Research productivity was measured through analysis several parameters, including: the number and time course of publications, the journal and language of publications, the frequency and type of publications, as well as top 20 active sub-categories together with country contribution. The extracted data were transferred into the Excel charts and plotted as diagrams. The Science of Science (Sci2) and CiteSpace softwares were used as tools for mapping the co-authorship and co-organization networks of the published papers. Results: Analysis of data indicated that the number of publications in the field of breast cancer has linearly increased and correlated with the time-course of the study. The number of publication indexed in WoS-CC in 2015 was two times greater than that of 2006, which reached from 15 229 documents in 2006 to 30 667 documents in 2015. English Language accounted for 98% of total publications as the most dominant language. The vast majority of publications' type was in the form of original journal articles (64.7%). Based on Bradford scatterings law, the journal of "Cancer Research" was the most productive journal among the core journals, while the USA, China, and England were the most prolific countries in the field. The co-organization network indicated the dominant role of Harvard University in the field. Conclusion: The integrity of network indicated that scientists in the field of breast cancer

  14. Co-authorship patterns and networks of Korean radiation oncologists

    International Nuclear Information System (INIS)

    Choi, Jin Hyun; Kang, Jin Oh; Park, Seo Hyun; Kim, Sang Ki

    2011-01-01

    This research aimed to analyze the patterns of co-authorship network among the Korean radiation oncologists and to identify attributing factors for the formation of networks. A total of 1,447 articles including contents of 'Radiation Oncology' and 'Therapeutic Radiology' were searched from the KoreaMed database. The co-authorship was assorted by the author's full name, affiliation and specialties. UCINET 6.0 was used to figure out the author's network centrality and the cluster analysis, and KeyPlayer 1.44 program was used to get a result of key player index. Sociogram was analyzed with the Netdraw 2.090. The statistical comparison was performed by a t-test and ANOVA using SPSS 16.0 with p-value < 0.05 as the significant value. The number of articles written by a radiation oncologist as the fi rst author was 1,025 out of 1,447. The pattern of coauthorship was classified into fi ve groups. For articles of which the fi rst author was a radiation oncologist, the number of single author articles (type-A) was 81; single-institution articles (type-B) was 687; and multiple-author articles (type-C) was 257. For the articles which radiation oncologists participated in as a co-author, the number of single-institution articles (type-D) was 280 while multiple-institution articles (type-E) were 142. There were 8,895 authors from 1,366 co-authored articles, thus the average number of authors per article was 6.51. It was 5.73 for type-B, 6.44 for type-C, 7.90 for type-D, and 7.67 for type-E (p 0.000) in the average number of authors per article. The number of authors for articles from the hospitals published more than 100 articles was 7.23 while form others was 5.94 (p = 0.005). Its number was 5.94 and 7.16 for the articles published before and after 2001 (p = 0.000). The articles written by a radiation oncologist as the fi rst author had 5.92 authors while others for 7.82 (p = 0.025). Its number was 5.57 and 7.71 for the Journal of the Korean Society for Therapeutic Radiology

  15. Collaboration patterns in the German political science co-authorship network.

    Science.gov (United States)

    Leifeld, Philip; Wankmüller, Sandra; Berger, Valentin T Z; Ingold, Karin; Steiner, Christiane

    2017-01-01

    Research on social processes in the production of scientific output suggests that the collective research agenda of a discipline is influenced by its structural features, such as "invisible colleges" or "groups of collaborators" as well as academic "stars" that are embedded in, or connect, these research groups. Based on an encompassing dataset that takes into account multiple publication types including journals and chapters in edited volumes, we analyze the complete co-authorship network of all 1,339 researchers in German political science. Through the use of consensus graph clustering techniques and descriptive centrality measures, we identify the ten largest research clusters, their research topics, and the most central researchers who act as bridges and connect these clusters. We also aggregate the findings at the level of research organizations and consider the inter-university co-authorship network. The findings indicate that German political science is structured by multiple overlapping research clusters with a dominance of the subfields of international relations, comparative politics and political sociology. A small set of well-connected universities takes leading roles in these informal research groups.

  16. Associating co-authorship patterns with publications in high-impact journals.

    Science.gov (United States)

    Bales, Michael E; Dine, Daniel C; Merrill, Jacqueline A; Johnson, Stephen B; Bakken, Suzanne; Weng, Chunhua

    2014-12-01

    To develop a method for investigating co-authorship patterns and author team characteristics associated with the publications in high-impact journals through the integration of public MEDLINE data and institutional scientific profile data. For all current researchers at Columbia University Medical Center, we extracted their publications from MEDLINE authored between years 2007 and 2011 and associated journal impact factors, along with author academic ranks and departmental affiliations obtained from Columbia University Scientific Profiles (CUSP). Chi-square tests were performed on co-authorship patterns, with Bonferroni correction for multiple comparisons, to identify team composition characteristics associated with publication impact factors. We also developed co-authorship networks for the 25 most prolific departments between years 2002 and 2011 and counted the internal and external authors, inter-connectivity, and centrality of each department. Papers with at least one author from a basic science department are significantly more likely to appear in high-impact journals than papers authored by those from clinical departments alone. Inclusion of at least one professor on the author list is strongly associated with publication in high-impact journals, as is inclusion of at least one research scientist. Departmental and disciplinary differences in the ratios of within- to outside-department collaboration and overall network cohesion are also observed. Enrichment of co-authorship patterns with author scientific profiles helps uncover associations between author team characteristics and appearance in high-impact journals. These results may offer implications for mentoring junior biomedical researchers to publish on high-impact journals, as well as for evaluating academic progress across disciplines in modern academic medical centers. Copyright © 2014 Elsevier Inc. All rights reserved.

  17. Comparing intermittency and network measurements of words and their dependence on authorship

    International Nuclear Information System (INIS)

    Amancio, Diego Raphael; Oliveira, Osvaldo N Jr; Fontoura Costa, Luciano da; Altmann, Eduardo G

    2011-01-01

    Many features of texts and languages can now be inferred from statistical analyses using concepts from complex networks and dynamical systems. In this paper, we quantify how topological properties of word co-occurrence networks and intermittency (or burstiness) in word distribution depend on the style of authors. Our database contains 40 books by eight authors who lived in the nineteenth and twentieth centuries, for which the following network measurements were obtained: the clustering coefficient, average shortest path lengths and betweenness. We found that the two factors with stronger dependence on authors were skewness in the distribution of word intermittency and the average shortest paths. Other factors such as betweenness and Zipf's law exponent show only weak dependence on authorship. Also assessed was the contribution from each measurement to authorship recognition using three machine learning methods. The best performance was about 65% accuracy upon combining complex networks and intermittency features with the nearest-neighbor algorithm of automatic authorship. From a detailed analysis of the interdependence of the various metrics, it is concluded that the methods used here are complementary for providing short- and long-scale perspectives on texts, which are useful for applications such as the identification of topical words and information retrieval. (paper)

  18. Authorship attribution based on Life-Like Network Automata.

    Science.gov (United States)

    Machicao, Jeaneth; Corrêa, Edilson A; Miranda, Gisele H B; Amancio, Diego R; Bruno, Odemir M

    2018-01-01

    The authorship attribution is a problem of considerable practical and technical interest. Several methods have been designed to infer the authorship of disputed documents in multiple contexts. While traditional statistical methods based solely on word counts and related measurements have provided a simple, yet effective solution in particular cases; they are prone to manipulation. Recently, texts have been successfully modeled as networks, where words are represented by nodes linked according to textual similarity measurements. Such models are useful to identify informative topological patterns for the authorship recognition task. However, there is no consensus on which measurements should be used. Thus, we proposed a novel method to characterize text networks, by considering both topological and dynamical aspects of networks. Using concepts and methods from cellular automata theory, we devised a strategy to grasp informative spatio-temporal patterns from this model. Our experiments revealed an outperformance over structural analysis relying only on topological measurements, such as clustering coefficient, betweenness and shortest paths. The optimized results obtained here pave the way for a better characterization of textual networks.

  19. Authorship attribution based on Life-Like Network Automata

    Science.gov (United States)

    Machicao, Jeaneth; Corrêa, Edilson A.; Miranda, Gisele H. B.; Amancio, Diego R.

    2018-01-01

    The authorship attribution is a problem of considerable practical and technical interest. Several methods have been designed to infer the authorship of disputed documents in multiple contexts. While traditional statistical methods based solely on word counts and related measurements have provided a simple, yet effective solution in particular cases; they are prone to manipulation. Recently, texts have been successfully modeled as networks, where words are represented by nodes linked according to textual similarity measurements. Such models are useful to identify informative topological patterns for the authorship recognition task. However, there is no consensus on which measurements should be used. Thus, we proposed a novel method to characterize text networks, by considering both topological and dynamical aspects of networks. Using concepts and methods from cellular automata theory, we devised a strategy to grasp informative spatio-temporal patterns from this model. Our experiments revealed an outperformance over structural analysis relying only on topological measurements, such as clustering coefficient, betweenness and shortest paths. The optimized results obtained here pave the way for a better characterization of textual networks. PMID:29566100

  20. Authorship attribution based on Life-Like Network Automata.

    Directory of Open Access Journals (Sweden)

    Jeaneth Machicao

    Full Text Available The authorship attribution is a problem of considerable practical and technical interest. Several methods have been designed to infer the authorship of disputed documents in multiple contexts. While traditional statistical methods based solely on word counts and related measurements have provided a simple, yet effective solution in particular cases; they are prone to manipulation. Recently, texts have been successfully modeled as networks, where words are represented by nodes linked according to textual similarity measurements. Such models are useful to identify informative topological patterns for the authorship recognition task. However, there is no consensus on which measurements should be used. Thus, we proposed a novel method to characterize text networks, by considering both topological and dynamical aspects of networks. Using concepts and methods from cellular automata theory, we devised a strategy to grasp informative spatio-temporal patterns from this model. Our experiments revealed an outperformance over structural analysis relying only on topological measurements, such as clustering coefficient, betweenness and shortest paths. The optimized results obtained here pave the way for a better characterization of textual networks.

  1. Alphabetical co-authorship in the social sciences and humanities: evidence from a comprehensive local database

    Energy Technology Data Exchange (ETDEWEB)

    Guns, R

    2016-07-01

    We present an analysis of alphabetical co-authorship in the social sciences and humanities (SSH), based on data from the VABB-SHW, a comprehensive database of SSH research output in Flanders (2000-2013). Using an unbiased estimator of the share of intentional alphabetical co-authorship (IAC), we find that alphabetical co-authorship is more engrained in SSH than in science as a whole. Within the SSH, large differences exist between disciplines. The highest proportions of IAC are found for Literature, Economics & business, and History. Furthermore, alphabetical co-authorship varies with publication type: it occurs most often in books, is less common in articles in journals or in books, and is rare in proceedings papers. The use of alphabetical co-authorship appears to be slowly declining. (Author)

  2. Scientific authorships and collaboration network analysis on Chagas disease: papers indexed in PubMed (1940-2009).

    Science.gov (United States)

    González-Alcaide, Gregorio; Park, Jinseo; Huamaní, Charles; Gascón, Joaquín; Ramos, José Manuel

    2012-08-01

    Chagas disease is a chronic, tropical, parasitic disease, endemic throughout Latin America. The large-scale migration of populations has increased the geographic distribution of the disease and cases have been observed in many other countries around the world. To strengthen the critical mass of knowledge generated in different countries, it is essential to promote cooperative and translational research initiatives. We analyzed authorship of scientific documents on Chagas disease indexed in the Medline database from 1940 to 2009. Bibliometrics was used to analyze the evolution of collaboration patterns. A Social Network Analysis was carried out to identify the main research groups in the area by applying clustering methods. We then analyzed 13,989 papers produced by 21,350 authors. Collaboration among authors dramatically increased over the study period, reaching an average of 6.2 authors per paper in the last five-year period. Applying a threshold of collaboration of five or more papers signed in co-authorship, we identified 148 consolidated research groups made up of 1,750 authors. The Chagas disease network identified constitutes a "small world," characterized by a high degree of clustering and a notably high number of Brazilian researchers.

  3. Co-authorship Network Analysis: A Powerful Tool for Strategic Planning of Research, Development and Capacity Building Programs on Neglected Diseases

    Science.gov (United States)

    Morel, Carlos Medicis; Serruya, Suzanne Jacob; Penna, Gerson Oliveira; Guimarães, Reinaldo

    2009-01-01

    Background New approaches and tools were needed to support the strategic planning, implementation and management of a Program launched by the Brazilian Government to fund research, development and capacity building on neglected tropical diseases with strong focus on the North, Northeast and Center-West regions of the country where these diseases are prevalent. Methodology/Principal Findings Based on demographic, epidemiological and burden of disease data, seven diseases were selected by the Ministry of Health as targets of the initiative. Publications on these diseases by Brazilian researchers were retrieved from international databases, analyzed and processed with text-mining tools in order to standardize author- and institution's names and addresses. Co-authorship networks based on these publications were assembled, visualized and analyzed with social network analysis software packages. Network visualization and analysis generated new information, allowing better design and strategic planning of the Program, enabling decision makers to characterize network components by area of work, identify institutions as well as authors playing major roles as central hubs or located at critical network cut-points and readily detect authors or institutions participating in large international scientific collaborating networks. Conclusions/Significance Traditional criteria used to monitor and evaluate research proposals or R&D Programs, such as researchers' productivity and impact factor of scientific publications, are of limited value when addressing research areas of low productivity or involving institutions from endemic regions where human resources are limited. Network analysis was found to generate new and valuable information relevant to the strategic planning, implementation and monitoring of the Program. It afforded a more proactive role of the funding agencies in relation to public health and equity goals, to scientific capacity building objectives and a more

  4. Co-authorship network analysis: a powerful tool for strategic planning of research, development and capacity building programs on neglected diseases.

    Directory of Open Access Journals (Sweden)

    Carlos Medicis Morel

    Full Text Available BACKGROUND: New approaches and tools were needed to support the strategic planning, implementation and management of a Program launched by the Brazilian Government to fund research, development and capacity building on neglected tropical diseases with strong focus on the North, Northeast and Center-West regions of the country where these diseases are prevalent. METHODOLOGY/PRINCIPAL FINDINGS: Based on demographic, epidemiological and burden of disease data, seven diseases were selected by the Ministry of Health as targets of the initiative. Publications on these diseases by Brazilian researchers were retrieved from international databases, analyzed and processed with text-mining tools in order to standardize author- and institution's names and addresses. Co-authorship networks based on these publications were assembled, visualized and analyzed with social network analysis software packages. Network visualization and analysis generated new information, allowing better design and strategic planning of the Program, enabling decision makers to characterize network components by area of work, identify institutions as well as authors playing major roles as central hubs or located at critical network cut-points and readily detect authors or institutions participating in large international scientific collaborating networks. CONCLUSIONS/SIGNIFICANCE: Traditional criteria used to monitor and evaluate research proposals or R&D Programs, such as researchers' productivity and impact factor of scientific publications, are of limited value when addressing research areas of low productivity or involving institutions from endemic regions where human resources are limited. Network analysis was found to generate new and valuable information relevant to the strategic planning, implementation and monitoring of the Program. It afforded a more proactive role of the funding agencies in relation to public health and equity goals, to scientific capacity building

  5. Study of co-authorship in the nets and the interdisciplinarity in the scientific production on the basis of social network analysis methods: evaluation of the posgraduation program in information science - PPGCI / UFMG

    Directory of Open Access Journals (Sweden)

    Antonio Braz de Oliveira e Silva

    2006-07-01

    Full Text Available This paper discusses the Social Network Analysis (SNA as a method to be broadly applied in researches in the Information Scienc (IS field. This science is, normally, presented as an interdisciplinary filed, but the reseaches lines conducted in Brazil have differents relationship with other disciplines, and doing so, dis-similars interdisciplinaries characteristics. The analysis of the co-authorship network of the professors of the PPGCI/UFMG emphasizes both, the strenght of the methodology and the characteristics of the colaboration in the IS. The article gives an overview of the theoretical basis of the SNA, and presents studies about subjects related to the Information Science field that are done applying SNA, mainly the coauthorship network analysis. Finally, the methodological approach of this research and the main results are presented.

  6. "Political co-authorships" in medical science journals.

    Science.gov (United States)

    Johal, Jaspreet; Loukas, Marios; Oskouian, Rod J; Tubbs, R Shane

    2017-09-01

    The issue of co-author relationships on medical sciences journal publications has become more pronounced as advances in technology have enabled collaboration across countries and institutions to occur much more efficiently. These relationships often have underlying political motivations and outcomes, including career advancement, attempting to increase prestige of a project, and maintaining research grants. Some authors may be listed as senior or honorary authors despite offering little or no contribution to the original research project. This may be done in an effort to enhance the gravitas of a research project, and attain publication in a highly regarded medical journal. The current review covers the topic of political co-authorship and germane literature and lists strategies to combat this phenomenon. Such co-authorship practices corrupt the integrity of the research process as they attempt to bypass the safeguard that medical journals and institutions have put in place to prevent fraud and falsification. A number of strategies have been proposed to combat the practice of co-authorship, but it may ultimately be an unavoidable feature of contemporary medical research publishing that is difficult to police. Clin. Anat. 30:831-834, 2017. © 2017Wiley Periodicals, Inc. © 2017 Wiley Periodicals, Inc.

  7. The Rise in Co-authorship in the Social Sciences (1980-2013)

    DEFF Research Database (Denmark)

    Henriksen, Dorte

    2015-01-01

    This paper examines the rise in co-authorship in the Social Sciences over a 33-year period. We investigate the development in co-authorship in different research areas and discuss how the methodological differences in these research areas and changes in academia affect the tendency to co-author a......This paper examines the rise in co-authorship in the Social Sciences over a 33-year period. We investigate the development in co-authorship in different research areas and discuss how the methodological differences in these research areas and changes in academia affect the tendency to co......-author articles. The study is based on bibliographic data about 4.5 million peer review articles published in the period 1980- 2013 and indexed in the 56 subject categories of the Web of Science’s (WoS) Social Science Citation Index (SSCI). Results show that in the majority of the subject categories we can...... data set, statistical methods and/or team-production models....

  8. Network effects on scientific collaborations.

    Directory of Open Access Journals (Sweden)

    Shahadat Uddin

    Full Text Available BACKGROUND: The analysis of co-authorship network aims at exploring the impact of network structure on the outcome of scientific collaborations and research publications. However, little is known about what network properties are associated with authors who have increased number of joint publications and are being cited highly. METHODOLOGY/PRINCIPAL FINDINGS: Measures of social network analysis, for example network centrality and tie strength, have been utilized extensively in current co-authorship literature to explore different behavioural patterns of co-authorship networks. Using three SNA measures (i.e., degree centrality, closeness centrality and betweenness centrality, we explore scientific collaboration networks to understand factors influencing performance (i.e., citation count and formation (tie strength between authors of such networks. A citation count is the number of times an article is cited by other articles. We use co-authorship dataset of the research field of 'steel structure' for the year 2005 to 2009. To measure the strength of scientific collaboration between two authors, we consider the number of articles co-authored by them. In this study, we examine how citation count of a scientific publication is influenced by different centrality measures of its co-author(s in a co-authorship network. We further analyze the impact of the network positions of authors on the strength of their scientific collaborations. We use both correlation and regression methods for data analysis leading to statistical validation. We identify that citation count of a research article is positively correlated with the degree centrality and betweenness centrality values of its co-author(s. Also, we reveal that degree centrality and betweenness centrality values of authors in a co-authorship network are positively correlated with the strength of their scientific collaborations. CONCLUSIONS/SIGNIFICANCE: Authors' network positions in co-authorship

  9. Scientific authorship and collaboration network analysis on malaria research in Benin: papers indexed in the web of science (1996-2016).

    Science.gov (United States)

    Azondekon, Roseric; Harper, Zachary James; Agossa, Fiacre Rodrigue; Welzig, Charles Michael; McRoy, Susan

    2018-01-01

    To sustain the critical progress made, prioritization and a multidisciplinary approach to malaria research remain important to the national malaria control program in Benin. To document the structure of the malaria collaborative research in Benin, we analyze authorship of the scientific documents published on malaria from Benin. We collected bibliographic data from the Web Of Science on malaria research in Benin from January 1996 to December 2016. From the collected data, a mulitigraph co-authorship network with authors representing vertices was generated. An edge was drawn between two authors when they co-author a paper. We computed vertex degree, betweenness, closeness, and eigenvectors among others to identify prolific authors. We further assess the weak points and how information flow in the network. Finally, we perform a hierarchical clustering analysis, and Monte-Carlo simulations. Overall, 427 publications were included in this study. The generated network contained 1792 authors and 116,388 parallel edges which converted in a weighted graph of 1792 vertices and 95,787 edges. Our results suggested that prolific authors with higher degrees tend to collaborate more. The hierarchical clustering revealed 23 clusters, seven of which form a giant component containing 94% of all the vertices in the network. This giant component has all the characteristics of a small-world network with a small shortest path distance between pairs of three, a diameter of 10 and a high clustering coefficient of 0.964. However, Monte-Carlo simulations suggested our observed network is an unusual type of small-world network. Sixteen vertices were identified as weak articulation points within the network. The malaria research collaboration network in Benin is a complex network that seems to display the characteristics of a small-world network. This research reveals the presence of closed research groups where collaborative research likely happens only between members. Interdisciplinary

  10. Using Co-authorship Networks to Map and Analyse Global Neglected Tropical Disease Research with an Affiliation to Germany.

    Directory of Open Access Journals (Sweden)

    Max Ernst Bender

    2015-12-01

    Full Text Available Research on Neglected Tropical Diseases (NTDs has increased in recent decades, and significant need-gaps in diagnostic and treatment tools remain. Analysing bibliometric data from published research is a powerful method for revealing research efforts, partnerships and expertise. We aim to identify and map NTD research networks in Germany and their partners abroad to enable an informed and transparent evaluation of German contributions to NTD research.A SCOPUS database search for articles with German author affiliations that were published between 2002 and 2012 was conducted for kinetoplastid and helminth diseases. Open-access tools were used for data cleaning and scientometrics (OpenRefine, geocoding (OpenStreetMaps and to create (Table2Net, visualise and analyse co-authorship networks (Gephi. From 26,833 publications from around the world that addressed 11 diseases, we identified 1,187 (4.4% with at least one German author affiliation, and we processed 972 publications for the five most published-about diseases. Of those, we extracted 4,007 individual authors and 863 research institutions to construct co-author networks. The majority of co-authors outside Germany were from high-income countries and Brazil. Collaborations with partners on the African continent remain scattered. NTD research within Germany was distributed among 220 research institutions. We identified strong performers on an individual level by using classic parameters (number of publications, h-index and social network analysis parameters (betweenness centrality. The research network characteristics varied strongly between diseases.The share of NTD publications with German affiliations is approximately half of its share in other fields of medical research. This finding underlines the need to identify barriers and expand Germany's otherwise strong research activities towards NTDs. A geospatial analysis of research collaborations with partners abroad can support decisions to

  11. The rise in co-authorship in the social sciences (1980-2013)

    DEFF Research Database (Denmark)

    Henriksen, Dorte

    2016-01-01

    This article examines the rise in co-authorship in the Social Sciences over a 34-year period. It investigates the development in co-authorship in different research fields and discusses how the methodological differences in these research fields together with changes in academia affect the tendency...... to co-author articles. The study is based on bibliographic data about 4.5 million peer review articles published in the period 1980-2013 and indexed in the 56 subject categories of the Web of Science’s (WoS) Social Science Citation Index (SSCI). The results show a rise in the average number of authors...... data set, statistical methods and/or team-production models....

  12. Patterns of authorship in the IPCC Working Group III report

    Science.gov (United States)

    Corbera, Esteve; Calvet-Mir, Laura; Hughes, Hannah; Paterson, Matthew

    2016-01-01

    The Intergovernmental Panel on Climate Change (IPCC) has completed its Fifth Assessment Report (AR5). Here, we explore the social scientific networks informing Working Group III (WGIII) assessment of mitigation for the AR5. Identifying authors’ institutional pathways, we highlight the persistence and extent of North-South inequalities in the authorship of the report, revealing the dominance of US and UK institutions as training sites for WGIII authors. Examining patterns of co-authorship between WGIII authors, we identify the unevenness in co-authoring relations, with a small number of authors co-writing regularly and indicative of an epistemic community’s influence over the IPCC’s definition of mitigation. These co-authoring networks follow regional patterns, with significant EU-BRICS collaboration and authors from the US relatively insular. From a disciplinary perspective, economists, engineers, physicists and natural scientists remain central to the process, with insignificant participation of scholars from the humanities. The shared training and career paths made apparent through our analysis suggest that the idea that broader geographic participation may lead to a wider range of viewpoints and cultural understandings of climate change mitigation may not be as sound as previously thought.

  13. Co-authorship and female participation in Brazilian scientific journals in the surgery field: Bibliometric study

    Directory of Open Access Journals (Sweden)

    Juliana Ravaschio Franco de Camargo

    2017-01-01

    Full Text Available Studies on female co-authorship in the scientific production of various areas of knowledge are frequent in international scientific literature. However, this object of study has been little explored by Brazilian research in the field of Information Science. This article presents a contribution to this area by presenting the results of a research that investigated female co-authorship and the participation of women in the editorial staff of Brazilian scientific journals in the area of surgery published between 2010 and 2014. The corpus investigated consisted of 920 articles published in four scientific journals: Acta Cirúrgica Brasileira (ACB, Arquivos Brasileiros de Cirurgia Digestiva (ABCD, Revista Brasileira de Cirurgia Cardiovascular (RBCCV and Revista do Colégio Brasileiro de Cirurgiões (RCBC. The bibliometric analysis is the methodological approach adopted and sample universe were 920 articles written by 5649 co-authors. Men appear as coauthors in 63.5% (n=585 of articles, while women show up as coauthors in 23.8% (219 of all articles. By investigating the gender of coauthorship in original and review articles, the results showed that women's participation is lower than men in both types and in all four journals. Observing the participation of women in editorial boards of the journals, the results revealed that in only one journal (ABCD the female presence is unique and exclusive. The study showed that gender inequality persists in terms of authorship, co-authorships, types of articles, and also on the editorial board, scientific committee and board of reviewers.

  14. Perceptions of Scholars in the Field of Economics on Co-Authorship Associations: Evidence from an International Survey.

    Science.gov (United States)

    Kumar, Sameer; Ratnavelu, Kuru

    2016-01-01

    Scholars (n = 580) from 69 countries who had contributed articles in the field of Economics during the year 2015 participated in a survey that gauged their perceptions of various aspects of co-authorship, including its benefits, motivations, working relationships, order of authorship and association preferences. Among the main findings, significant differences emerged in the proportion of co-authored papers based on age, gender and number of years the researchers had spent in their present institution. Female scholars had a greater proportion of co-authored papers than male scholars. Respondents considered improved quality of paper, contribution of mutual expertise, and division of labor as the biggest benefits of and motivation for co-authorship. Contrary to common perceptions that Economics researchers used a predominantly alphabetical order of authorship, our study found that a considerable percentage of respondents (34.5%) had practiced an order of authorship based on the significance of the authors' contribution to the work. The relative importance of tasks differed significantly according to whether researchers co-authored as mentors or co-authored as colleagues. Lastly, researchers were found to associate, to varying degrees, with other researchers based on socio-academic parameters, such as nationality, ethnicity, gender, professional position and friendship. The study indicates that Economics authors perceive co-authorship as a rewarding endeavor. Nonetheless, the level of contribution and even the choice of association itself as a co-author depends to a great extent on the type of working relationship and socio-academic factors.

  15. Perceptions of Scholars in the Field of Economics on Co-Authorship Associations: Evidence from an International Survey.

    Directory of Open Access Journals (Sweden)

    Sameer Kumar

    Full Text Available Scholars (n = 580 from 69 countries who had contributed articles in the field of Economics during the year 2015 participated in a survey that gauged their perceptions of various aspects of co-authorship, including its benefits, motivations, working relationships, order of authorship and association preferences. Among the main findings, significant differences emerged in the proportion of co-authored papers based on age, gender and number of years the researchers had spent in their present institution. Female scholars had a greater proportion of co-authored papers than male scholars. Respondents considered improved quality of paper, contribution of mutual expertise, and division of labor as the biggest benefits of and motivation for co-authorship. Contrary to common perceptions that Economics researchers used a predominantly alphabetical order of authorship, our study found that a considerable percentage of respondents (34.5% had practiced an order of authorship based on the significance of the authors' contribution to the work. The relative importance of tasks differed significantly according to whether researchers co-authored as mentors or co-authored as colleagues. Lastly, researchers were found to associate, to varying degrees, with other researchers based on socio-academic parameters, such as nationality, ethnicity, gender, professional position and friendship. The study indicates that Economics authors perceive co-authorship as a rewarding endeavor. Nonetheless, the level of contribution and even the choice of association itself as a co-author depends to a great extent on the type of working relationship and socio-academic factors.

  16. The strength of co-authorship in gene name disambiguation

    Directory of Open Access Journals (Sweden)

    Farkas Richárd

    2008-01-01

    Full Text Available Abstract Background A biomedical entity mention in articles and other free texts is often ambiguous. For example, 13% of the gene names (aliases might refer to more than one gene. The task of Gene Symbol Disambiguation (GSD – a special case of Word Sense Disambiguation (WSD – is to assign a unique gene identifier for all identified gene name aliases in biology-related articles. Supervised and unsupervised machine learning WSD techniques have been applied in the biomedical field with promising results. We examine here the utilisation potential of the fact – one of the special features of biological articles – that the authors of the documents are known through graph-based semi-supervised methods for the GSD task. Results Our key hypothesis is that a biologist refers to each particular gene by a fixed gene alias and this holds for the co-authors as well. To make use of the co-authorship information we decided to build the inverse co-author graph on MedLine abstracts. The nodes of the inverse co-author graph are articles and there is an edge between two nodes if and only if the two articles have a mutual author. We introduce here two methods using distances (based on the graph of abstracts for the GSD task. We found that a disambiguation decision can be made in 85% of cases with an extremely high (99.5% precision rate just by using information obtained from the inverse co-author graph. We incorporated the co-authorship information into two GSD systems in order to attain full coverage and in experiments our procedure achieved precision of 94.3%, 98.85%, 96.05% and 99.63% on the human, mouse, fly and yeast GSD evaluation sets, respectively. Conclusion Based on the promising results obtained so far we suggest that the co-authorship information and the circumstances of the articles' release (like the title of the journal, the year of publication can be a crucial building block of any sophisticated similarity measure among biological articles

  17. The Communications and Networks Collaborative Technology Alliance Publication Network: A Case Study on Graph and Simplicial Complex Analysis

    Science.gov (United States)

    2015-05-01

    Because of this closure property on subsets, simplicial complexes are amenable to mathe - matical formalism in combinatorics, abstract algebra, and...Introduction. Oxford (United Kingdom): Oxford University Press. 7. Wasserman S, Faust K. 1994. Social Network Analysis: Methods and Applica- tions. New York (NY...Bollen J, Nelson ML, Van de Sompel H. Co-authorship networks in the digital library research community. Information Processing and Management. 2005;41

  18. A Comprehensive Analysis of Authorship in Radiology Journals.

    Science.gov (United States)

    Dang, Wilfred; McInnes, Matthew D F; Kielar, Ania Z; Hong, Jiho

    2015-01-01

    The purpose of our study was to investigate authorship trends in radiology journals, and whether International Committee of Medical Journal Editors (ICMJE) recommendations have had an impact on these trends. A secondary objective was to explore other variables associated with authorship trends. A retrospective, bibliometric analysis of 49 clinical radiology journals published from 1946-2013 was conducted. The following data was exported from MEDLINE (1946 to May 2014) for each article: authors' full name, year of publication, primary author institution information, language of publication and publication type. Microsoft Excel Visual Basics for Applications scripts were programmed to categorize extracted data. Statistical analysis was performed to determine the overall mean number of authors per article over time, impact of ICMJE guidelines, authorship frequency per journal, country of origin, article type and language of publication. 216,271 articles from 1946-2013 were included. A univariate analysis of the mean authorship frequency per year of all articles yielded a linear relationship between time and authorship frequency. The mean number of authors per article in 1946 (1.42) was found to have increased consistently by 0.07 authors/ article per year (R² = 0.9728, Pjournals, country of origin, language of publication and article type. Overall authorship for 49 radiology journals across 68 years has increased markedly with no demonstrated impact from ICMJE guidelines. A higher number of authors per article was seen in articles from: higher impact journals, European and Asian countries, original research type, and those journals who explicitly endorse the ICMJE guidelines.

  19. Authorship issues in multi-centre clinical trials: the importance of making an authorship contract.

    Science.gov (United States)

    Rosenberg, Jacob; Burcharth, Jakob; Pommergaard, Hans-Christian; Vinther, Siri

    2015-02-01

    Discussions about authorship often arise in multi-centre clinical trials. Such trials may involve up to hundreds of contributors of whom some will eventually co-author the final publication. It is, however, often impossible to involve all contributors in the manuscript process sufficiently for them to qualify for authorship as defined by the International Committee of Medical Journal Editors. Therefore, rules for authorship in multi-centre trials are strongly recommended. We propose two contracts to prevent conflicts regarding authorship; both are freely available for use without pay but with reference to the original source.

  20. What factors are associated with increasing co-authorship in the social sciences? A case study of Danish Economics and Political Science

    DEFF Research Database (Denmark)

    Henriksen, Dorte

    2018-01-01

    these changes. This article examines the relationship between changes in co-authorship and research in Danish economics and political science to gain greater insights into whether there are changes in the research or in researchers' behavior. The analysis shows that articles with empirical research......The number of co-authors has in the social sciences has been rising over the last decades, but a deeper understanding of why this rise is occurring is lacking. Previous studies of co-authorship in the social sciences often refer to the physical or life sciences or anecdotal evidence to explain......, quantitative research and/or survey are more likely to have a higher number of coauthors than articles based on theoretical, interview, and qualitative research. Furthermore, international and interinstitutional Danish articles tend to have more coauthors than interinstitutional articles. The analysis also...

  1. Social network analysis of Iranian researchers in the field of violence.

    Science.gov (United States)

    Salamati, Payman; Soheili, Faramarz

    2016-10-01

    The social network analysis (SNA) is a paradigm for analyzing structural patterns in social re- lations, testing knowledge sharing process and identifying bottlenecks of information flow. The purpose of this study was to determine the status of research in the fleld of violence in Iran using SNA. Research population included all the papers with at least one Iranian affiliation published in violence fleld indexed in SCIE, PubMed and Scopus databases. The co-word maps, co-authorship network and structural holes were drawn using related software. In the next step, the active authors and some measures of our network including degree centrality (DC), closeness, eigenvector, betweeness, density, diameter, compactness and size of the main component were assessed. Likewise, the trend of the published articles was evaluated based on the number of documents and their citations from 1972 to 2014. Five hundred and seventy one records were obtained. The five main clusters and hot spots were mental health, violence, war, psychiatric disorders and suicide. The co-authorship network was complex, tangled and scale free. The top nine authors with cut point role and top ten active authors were identified. The mean (standard deviation) of normalized DC, closeness, eigenvector and betweeness were 0.449 (0.805), 0.609 (0.214), 2.373 (7.353) and 0.338 (1.122), respectively. The density, diameter and mean compactness of our co-authorship network were 0.0494, 3.955 and 0.125, respectively. The main component consisted of 216 nodes that formed 17% of total size of the network. Both the number of the documents and their citations has increased in the field of violence in the recent years. Although the number of the documents has recently increased in the field of violence, the information flow is slow and there are not many relations among the authors in the network. However, the active authors have ability to influence the flow of knowledge within the network.

  2. Gender equality in academic research on epilepsy-a study on scientific authorships.

    Science.gov (United States)

    Bendels, Michael H K; Wanke, Eileen; Schöffel, Norman; Bauer, Jan; Quarcoo, David; Groneberg, David A

    2017-10-01

    The study aims to elucidate the state of gender equality in epilepsy research, analyzing the representation of female authorships from 2008 to 2016. Gendermetrics aided in analyzing 106,282 authorships from 22,180 epilepsy-related original research articles. The key methodology was the combined analysis of the relative frequency and the odds ratio of female authorships. The Prestige Index measures the distribution of prestigious authorships between the two genders. The following were held by women: 39.6% of all authorships and 44.1% of the first, 41.0% of the co-, and 29.0% of the last authorships. Female authors have an odds ratio of 1.25 (95% CI 1.21-1.29) for first, 1.17 (CI 1.14-1.20) for co-, and 0.57 (CI 0.55-0.59) for last authorships. The female authorship ratios showed substantial growth in recent years, with an annual growth rate of 1.7% overall, with 2.4% for first, 1.4% for co-, and 1.9% for last authorships. Women publish fewer articles compared to men (43.8% female authors hold 39.6% of the authorships). Women are also less likely to secure prestigious authorships in articles with many authors that attract the highest citation rates. Multi-author articles with male key authors are cited slightly more frequently than articles with female key authors. Distinct differences at the country level were revealed. The prognosis for the next decade forecasts significantly increasing female odds for first authorships and only slightly higher female odds for last authorships. A female authorship ratio of 49.2% is predicted for the year 2026. The integration of women in the scientific field of epilepsy is advanced. However, a dichotomy is present: Although the current system promotes early career steps, there is an apparent lack of female research leaders. This structural imbalance is expected to grow in the next decade due to the consistently high increase of female early career researchers. Wiley Periodicals, Inc. © 2017 International League Against Epilepsy.

  3. Authorship attribution of source code by using back propagation neural network based on particle swarm optimization.

    Science.gov (United States)

    Yang, Xinyu; Xu, Guoai; Li, Qi; Guo, Yanhui; Zhang, Miao

    2017-01-01

    Authorship attribution is to identify the most likely author of a given sample among a set of candidate known authors. It can be not only applied to discover the original author of plain text, such as novels, blogs, emails, posts etc., but also used to identify source code programmers. Authorship attribution of source code is required in diverse applications, ranging from malicious code tracking to solving authorship dispute or software plagiarism detection. This paper aims to propose a new method to identify the programmer of Java source code samples with a higher accuracy. To this end, it first introduces back propagation (BP) neural network based on particle swarm optimization (PSO) into authorship attribution of source code. It begins by computing a set of defined feature metrics, including lexical and layout metrics, structure and syntax metrics, totally 19 dimensions. Then these metrics are input to neural network for supervised learning, the weights of which are output by PSO and BP hybrid algorithm. The effectiveness of the proposed method is evaluated on a collected dataset with 3,022 Java files belong to 40 authors. Experiment results show that the proposed method achieves 91.060% accuracy. And a comparison with previous work on authorship attribution of source code for Java language illustrates that this proposed method outperforms others overall, also with an acceptable overhead.

  4. Presenting results as dynamically generated co-authorship subgraphs in semantic digital library collections

    Directory of Open Access Journals (Sweden)

    James Powell

    2012-02-01

    Full Text Available Semantic web representations of data are by definition graphs, and these graphs can be explored using concepts from graph theory. This paper demonstrates how semantically mapped bibliographic metadata, combined with a lightweight software architecture and Web-based graph visualization tools, can be used to generate dynamic authorship graphs in response to typical user queries, as an alternative to more common text-based results presentations. It also shows how centrality measures and path analysis techniques from social network analysis can be used to enhance the visualization of query results. The resulting graphs require modestly more cognitive engagement from the user but offer insights not available from text.

  5. An Examination of Research Collaboration in Psychometrics Utilizing Social Network Analysis Methods

    Science.gov (United States)

    DiCrecchio, Nicole C.

    2016-01-01

    Co-authorship networks have been studied in many fields as a way to understand collaboration patterns. However, a comprehensive exploration of the psychometrics field has not been conducted. Also, few studies on co-author networks have included longitudinal analyses as well as data on the characteristics of authors in the network. Including both…

  6. Social Network Analysis of Scientific Articles Published by Food Policy

    Directory of Open Access Journals (Sweden)

    József Popp

    2018-02-01

    Full Text Available The article analyses co-authorship and co-citation networks in Food Policy, which is the most important agricultural policy journal in the field of agricultural economics. The paper highlights the principal researchers in this field together with their authorship and citation networks on the basis of 714 articles written between 2006 and 2015. Results suggest that the majority of the articles were written by a small number of researchers, indicating that groups and central authors play an important role in scientific advances. It also turns out that the number of articles and the central role played in the network are not related, contrary to expectations. Results also suggest that groups cite themselves more often than average, thereby boosting the scientific advancement of their own members.

  7. Co-Authorship and Collaboration in Academia

    DEFF Research Database (Denmark)

    Henriksen, Dorte

    Researchers’ status in academia is primarily determined by reputation. This reputation is applied in hiring, promotion and funding decisions, as well as performance evaluations (Weingart, 2005). Perhaps, one of the single most important factors for establishing a reputation is authorship, ideally...... of an article publish in a high-ranking journal. The journal article is often an essential part of bibliometric based research assessment, and we use the article features (citations, references, authors, publishers etc.) to multiple kinds of analysis. The growing tendency in academia to demand and use...

  8. Investigating JEEM empirically: a story of co-authorship and collaboration

    OpenAIRE

    Schymura, Michael; Löschel, Andreas

    2012-01-01

    We examine the incidence and extent of co-authorship and intellectual collaboration in the leading journal of environmental and resource economics: the Journal of Environmental Economics and Management. Previous studies of general economic journals have offered empirical evidence for the fact that intellectual collaboration is most prevalent in the field of environmental and resource economics. However, no previous study has examined this finding more carefully. This is a gap in the literatur...

  9. The question of authorship in the era of cyberculture

    Directory of Open Access Journals (Sweden)

    Raquel Yukie Murakami

    2014-04-01

    Full Text Available This paper aims at analyzing a number of consequences of the concept of authorship in the contemporary debate. Therefore, two objects, representing current tendencies, where chosen, both marked by the dynamics of cyberculture: Facebook and fandom. The first, a social network widely used in Brazil, does not require introductions. The latter is less known by general public, because it refers to a space used by fans to discuss the works they love. Through the analysis of these two virtual spaces, this paper is going to show how the authorship is called into question nowadays. It is going to describe the attempts of authors hedging their symbolic space and the readers’ strategies to conquer the authorship field.

  10. Multiscale Embedded Gene Co-expression Network Analysis.

    Directory of Open Access Journals (Sweden)

    Won-Min Song

    2015-11-01

    Full Text Available Gene co-expression network analysis has been shown effective in identifying functional co-expressed gene modules associated with complex human diseases. However, existing techniques to construct co-expression networks require some critical prior information such as predefined number of clusters, numerical thresholds for defining co-expression/interaction, or do not naturally reproduce the hallmarks of complex systems such as the scale-free degree distribution of small-worldness. Previously, a graph filtering technique called Planar Maximally Filtered Graph (PMFG has been applied to many real-world data sets such as financial stock prices and gene expression to extract meaningful and relevant interactions. However, PMFG is not suitable for large-scale genomic data due to several drawbacks, such as the high computation complexity O(|V|3, the presence of false-positives due to the maximal planarity constraint, and the inadequacy of the clustering framework. Here, we developed a new co-expression network analysis framework called Multiscale Embedded Gene Co-expression Network Analysis (MEGENA by: i introducing quality control of co-expression similarities, ii parallelizing embedded network construction, and iii developing a novel clustering technique to identify multi-scale clustering structures in Planar Filtered Networks (PFNs. We applied MEGENA to a series of simulated data and the gene expression data in breast carcinoma and lung adenocarcinoma from The Cancer Genome Atlas (TCGA. MEGENA showed improved performance over well-established clustering methods and co-expression network construction approaches. MEGENA revealed not only meaningful multi-scale organizations of co-expressed gene clusters but also novel targets in breast carcinoma and lung adenocarcinoma.

  11. Multiscale Embedded Gene Co-expression Network Analysis.

    Science.gov (United States)

    Song, Won-Min; Zhang, Bin

    2015-11-01

    Gene co-expression network analysis has been shown effective in identifying functional co-expressed gene modules associated with complex human diseases. However, existing techniques to construct co-expression networks require some critical prior information such as predefined number of clusters, numerical thresholds for defining co-expression/interaction, or do not naturally reproduce the hallmarks of complex systems such as the scale-free degree distribution of small-worldness. Previously, a graph filtering technique called Planar Maximally Filtered Graph (PMFG) has been applied to many real-world data sets such as financial stock prices and gene expression to extract meaningful and relevant interactions. However, PMFG is not suitable for large-scale genomic data due to several drawbacks, such as the high computation complexity O(|V|3), the presence of false-positives due to the maximal planarity constraint, and the inadequacy of the clustering framework. Here, we developed a new co-expression network analysis framework called Multiscale Embedded Gene Co-expression Network Analysis (MEGENA) by: i) introducing quality control of co-expression similarities, ii) parallelizing embedded network construction, and iii) developing a novel clustering technique to identify multi-scale clustering structures in Planar Filtered Networks (PFNs). We applied MEGENA to a series of simulated data and the gene expression data in breast carcinoma and lung adenocarcinoma from The Cancer Genome Atlas (TCGA). MEGENA showed improved performance over well-established clustering methods and co-expression network construction approaches. MEGENA revealed not only meaningful multi-scale organizations of co-expressed gene clusters but also novel targets in breast carcinoma and lung adenocarcinoma.

  12. Social Network and Content Analysis of the North American Carbon Program as a Scientific Community of Practice

    Science.gov (United States)

    Brown, Molly E.; Ihli, Monica; Hendrick, Oscar; Delgado-Arias, Sabrina; Escobar, Vanessa M.; Griffith, Peter

    2015-01-01

    The North American Carbon Program (NACP) was formed to further the scientific understanding of sources, sinks, and stocks of carbon in Earth's environment. Carbon cycle science integrates multidisciplinary research, providing decision-support information for managing climate and carbon-related change across multiple sectors of society. This investigation uses the conceptual framework of com-munities of practice (CoP) to explore the role that the NACP has played in connecting researchers into a carbon cycle knowledge network, and in enabling them to conduct physical science that includes ideas from social science. A CoP describes the communities formed when people consistently engage in shared communication and activities toward a common passion or learning goal. We apply the CoP model by using keyword analysis of abstracts from scientific publications to analyze the research outputs of the NACP in terms of its knowledge domain. We also construct a co-authorship network from the publications of core NACP members, describe the structure and social pathways within the community. Results of the content analysis indicate that the NACP community of practice has substantially expanded its research on human and social impacts on the carbon cycle, contributing to a better understanding of how human and physical processes interact with one another. Results of the co-authorship social network analysis demonstrate that the NACP has formed a tightly connected community with many social pathways through which knowledge may flow, and that it has also expanded its network of institutions involved in carbon cycle research over the past seven years.

  13. Authorship Guidelines and Actual Practice: Are They Harmonized in Different Research Systems?

    Directory of Open Access Journals (Sweden)

    Sonia Vasconcelos

    2014-10-01

    Full Text Available Changing patterns in collaborative research networks reflect a new geography of science that is increasingly shaped by interactions between established and emerging scientific powers, whose cultural and political diversity are now reflected in perhaps never before thought of interactions. The various partners in these international collaborations are likely to produce research results that should gradually lead to stronger diversity in research output, including an increase in international co-authorship. When it comes to multinational co-authored publications, among sensitive questions that may complicate these relationships is the way different research systems deal with research integrity. It is well worth examining how to accommodate different cultural traditions and normative assumptions embedded in academic practices for collaborative research networks. Given the increasingly international and interdisciplinary nature of science and engineering, any guidelines for authorship practices in international collaborations must be clear about the variations that exist across disciplines and cultures, variations which will have an impact on accepted practices and expectations for collaboration. Collaborative endeavors in research will succeed only if a broader understanding of potential obstacles to these collaborations is reached.

  14. A new method to construct co-author networks

    Science.gov (United States)

    Liu, Jie; Li, Yunpeng; Ruan, Zichan; Fu, Guangyuan; Chen, Xiaowu; Sadiq, Rehan; Deng, Yong

    2015-02-01

    In this paper, we propose a new method to evaluate the importance of nodes in a given network. The proposed method is based on the PageRank algorithm. However, we have made necessary improvements to combine the importance of the node itself and that of its community status. First, we propose an improved method to better evaluate the real impact of a paper. The proposed method calibrates the real influence of a paper over time. Then we propose a scheme of evaluating the contribution of each author in a paper. We later develop a new method to combine the information of the author itself and the structure of the co-author network. We use the number of co-authorship to calculate the effective distance between two authors, and evaluate the strength of their influence to each other with the law of gravity. The strength of influence is used to build a new network of authors, which is a comprehensive topological representation of both the quality of the node and its role in network. Finally, we apply our method to the Erdos co-author community and AMiner Citation Network to identify the most influential authors.

  15. A study on scientific collaboration and co-authorship patterns in library and information science studies in Iran between 2005 and 2009.

    Science.gov (United States)

    Siamaki, Saba; Geraei, Ehsan; Zare-Farashbandi, Firoozeh

    2014-01-01

    Scientific collaboration is among the most important subjects in scientometrics, and many studies have investigated this concept to this day. The goal of the current study is investigation of scientific collaboration and co-authorship patterns of researchers in the field of library and information science in Iran between years 2005 and 2009. The current study uses scientometrics method. The statistical population consists of 942 documents published in Iranian library and information science journals between years 2005 and 2009. Collaboration coefficient, collaboration index (CI), and degree of collaboration (DC) were used for data analysis. The findings showed that among 942 investigated documents, 506 documents (53.70%) was created by one individual researcher and 436 documents (46.30%) were the result of collaboration between two or more researchers. Also, the highest rank of different authorship patterns belonged to National Journal of Librarianship and Information Organization (code H). The average collaboration coefficient for the library and information science researchers in the investigated time frame was 0.23. The closer this coefficient is to 1, the higher is the level of collaboration between authors, and a coefficient near zero shows a tendency to prefer individual articles. The highest collaboration index with an average of 1.92 authors per paper was seen in year 1388. The five year collaboration index in library and information science in Iran was 1.58, and the average degree of collaboration between researchers in the investigated papers was 0.46, which shows that library and information science researchers have a tendency for co-authorship. However, the co-authorship had increased in recent years reaching its highest number in year 1388. The researchers' collaboration coefficient also shows relative increase between years 1384 and 1388. National Journal of Librarianship and Information Organization has the highest rank among all the investigated

  16. Authorship and contributorship.

    Science.gov (United States)

    Zarghami, Mehran

    2011-01-01

    Authorship which is important to the grant support, academic promotion and reputation of the scientists and their institution should be determined by how genuinely they contribute to each article. The International Committee of Medical Journal Editors (ICMJE) has recommended that authorship credit should be based on substantial contributions to conception and design, acquisition of data, or analysis and interpretation of data; drafting the manuscript or critical revising it; and ultimate approval of the version to be published. Interpretation of the respective contributions of individual authors is not possible from order of authorship. The corresponding author should certify that all authors fulfill standards for authorship and prepare a brief written description of their contribution to the manuscript. This information provides an appropriate context for the readers of the articles to be able to interpret the authors' roles correctly.

  17. Centrality measures in temporal networks with time series analysis

    Science.gov (United States)

    Huang, Qiangjuan; Zhao, Chengli; Zhang, Xue; Wang, Xiaojie; Yi, Dongyun

    2017-05-01

    The study of identifying important nodes in networks has a wide application in different fields. However, the current researches are mostly based on static or aggregated networks. Recently, the increasing attention to networks with time-varying structure promotes the study of node centrality in temporal networks. In this paper, we define a supra-evolution matrix to depict the temporal network structure. With using of the time series analysis, the relationships between different time layers can be learned automatically. Based on the special form of the supra-evolution matrix, the eigenvector centrality calculating problem is turned into the calculation of eigenvectors of several low-dimensional matrices through iteration, which effectively reduces the computational complexity. Experiments are carried out on two real-world temporal networks, Enron email communication network and DBLP co-authorship network, the results of which show that our method is more efficient at discovering the important nodes than the common aggregating method.

  18. Explaining international co-authorship in global environmental change research

    Energy Technology Data Exchange (ETDEWEB)

    Jappe, A.

    2006-04-15

    This paper maps the domain of earth and environmental sciences (EES) and investigates the relationship between cognitive problem structures and internationalisation patterns, drawing on the concepts of systemic versus cumulative global environmental change (GEC) and mutual task dependence in scientific fields. We find that scientific output concentration and internationalisation are significantly higher in the systemic GEC fields of Meteorology and Atmospheric Sciences and Oceanography than in the cumulative GEC fields Ecology and Water Resources. The relationship is explained by stronger mutual task dependence in systemic GEC fields. In contrast, the portion of co-authorships with developing, emerging and transition countries among all international publications is larger for Water Resources than for the three other fields, consistent with the most pressing needs for STI capacity development in these countries. (orig.)

  19. Networks dynamics in the case of emerging technologies

    Energy Technology Data Exchange (ETDEWEB)

    Rotolo, D

    2016-07-01

    This research in progress aims at increasing our understanding of how collaborative networks form, evolve and are configured in the case of emerging technologies. The architecture of the relationships among the variety of organisational actors involved in the emergence process exerts a significant influence in shaping technological change in certain directions rather than others, especially in the early stage of emergence. As a result, socially optimal or desirable technological trajectories may be ‘opportunistically’ rejected. Our empirical analysis is based on a case-study of an emerging medical technology, namely ‘microneedles’. On the basis of co-authorship data reported in 1,943 publications on the topic from 1990 to 2014, longitudinal collaboration (co-authorship) networks were built at two levels: affiliation and author. We examined the dynamics of co-authorship networks by building on recent methodological advancements in network analysis, i.e. Exponential Random Graph Models (ERGMs). These models enable us to make statistical inferences about on the extent to which a network configuration occurs more than could be expected by chance and to identify which social mechanisms may be shaping the network in certain configurations. The findings of the statistical analyses (currently in progress) combined with the qualitative understanding of the case will increase our understanding of which mechanisms are more likely to drive the network dynamics in the case of emerging technologies. These include evidence of the extent to which the likelihood of forming, maintaining, or terminating ties among actors (authors or affiliations) is affected by actors’ covariates such as types of organisations, diversity/specialisation of the research undertaken, and status. These findings have potential to provide important inputs for policymaking process in the case of emerging technologies. (Author)

  20. Networks dynamics in the case of emerging technologies

    International Nuclear Information System (INIS)

    Rotolo, D

    2016-01-01

    This research in progress aims at increasing our understanding of how collaborative networks form, evolve and are configured in the case of emerging technologies. The architecture of the relationships among the variety of organisational actors involved in the emergence process exerts a significant influence in shaping technological change in certain directions rather than others, especially in the early stage of emergence. As a result, socially optimal or desirable technological trajectories may be ‘opportunistically’ rejected. Our empirical analysis is based on a case-study of an emerging medical technology, namely ‘microneedles’. On the basis of co-authorship data reported in 1,943 publications on the topic from 1990 to 2014, longitudinal collaboration (co-authorship) networks were built at two levels: affiliation and author. We examined the dynamics of co-authorship networks by building on recent methodological advancements in network analysis, i.e. Exponential Random Graph Models (ERGMs). These models enable us to make statistical inferences about on the extent to which a network configuration occurs more than could be expected by chance and to identify which social mechanisms may be shaping the network in certain configurations. The findings of the statistical analyses (currently in progress) combined with the qualitative understanding of the case will increase our understanding of which mechanisms are more likely to drive the network dynamics in the case of emerging technologies. These include evidence of the extent to which the likelihood of forming, maintaining, or terminating ties among actors (authors or affiliations) is affected by actors’ covariates such as types of organisations, diversity/specialisation of the research undertaken, and status. These findings have potential to provide important inputs for policymaking process in the case of emerging technologies. (Author)

  1. Evaluating research and impact: a bibliometric analysis of research by the NIH/NIAID HIV/AIDS clinical trials networks.

    Directory of Open Access Journals (Sweden)

    Scott R Rosas

    2011-03-01

    Full Text Available Evaluative bibliometrics uses advanced techniques to assess the impact of scholarly work in the context of other scientific work and usually compares the relative scientific contributions of research groups or institutions. Using publications from the National Institute of Allergy and Infectious Diseases (NIAID HIV/AIDS extramural clinical trials networks, we assessed the presence, performance, and impact of papers published in 2006-2008. Through this approach, we sought to expand traditional bibliometric analyses beyond citation counts to include normative comparisons across journals and fields, visualization of co-authorship across the networks, and assess the inclusion of publications in reviews and syntheses. Specifically, we examined the research output of the networks in terms of the a presence of papers in the scientific journal hierarchy ranked on the basis of journal influence measures, b performance of publications on traditional bibliometric measures, and c impact of publications in comparisons with similar publications worldwide, adjusted for journals and fields. We also examined collaboration and interdisciplinarity across the initiative, through network analysis and modeling of co-authorship patterns. Finally, we explored the uptake of network produced publications in research reviews and syntheses. Overall, the results suggest the networks are producing highly recognized work, engaging in extensive interdisciplinary collaborations, and having an impact across several areas of HIV-related science. The strengths and limitations of the approach for evaluation and monitoring research initiatives are discussed.

  2. Emerging Politics of Authorship: Recovering Collectivity, Negotiating the Risk

    Directory of Open Access Journals (Sweden)

    Andrea Pisac

    2011-12-01

    Full Text Available This article examines authorship as a socially embedded process by challenging Western notions of the autonomous creative genius. It considers social interactions between various agents in the field of literary production which in turn recovers the collective nature of modern authorship. Far from leaving it unexamined, it further contextualises authorial collectivity and its role in the emerging model of authorship. Questions and arguments raised in this article are informed by the ethnographic data collected during my doctoral research focusing on the reception of post-1990s ex-Yugoslav literature on the UK book market. Such ethnographic approach to literary translations – i.e. the micro-level analysis of social interactions that ‘create’ literature – demonstrated how the author is ‘created’ in the communication of two literary systems through linguistic translation as well as re-translations of symbolic and social capitals. My research was concerned with analysing the ‘backstage’ of the publishing industry – informal networks and international literary geopolitics – which all contributed to debunking the myth of the autonomous creative genius. However, instead of retracing my steps, this article outlines new avenues and questions that such analysis has opened up. One such question is how new technologies are (reconstructing and (repositioning the role of the author.

  3. Mine, thine, and ours: collaboration and co-authorship in the material culture of the mid-twentieth century chemical laboratory.

    Science.gov (United States)

    Nye, Mary Jo

    2014-08-01

    Patterns of collaboration and co-authorship in chemical science from the 1920s to the 1960s are examined with an eye to frequency of co-authorship and differences in allocation of credit during a period of increasing team research and specialization within chemical research groups. Three research leaders in the cross-disciplinary and cutting edge field of X-ray crystallography and molecular structure are the focus of this historical study within a framework of sociological literature on different collaborative patterns followed by eminent scientists. The examples of Michael Polanyi in Berlin and Manchester, Linus Pauling in Pasadena, and Dorothy Crowfoot Hodgkin in Oxford demonstrate the need to de-centre historical narrative from the heroic 'he' or 'she' to the collaborative 'they.' These cases demonstrate, too, the roles of disciplinary apprenticeships, local conditions, and individual personalities for historical explanation that transcends universal generalizations about scientific practice, material culture, and sociological trends.

  4. Heroin assisted treatment and research networks

    DEFF Research Database (Denmark)

    Houborg, Esben; Munksgaard, Rasmus

    2015-01-01

    Purpose – The purpose of this paper is to map research communities related to heroin-assisted treatment (HAT) and the scientific network they are part of to determine their structure and content. Design/methodology/approach – Co-authorship as the basis for conducting social network analysis....... In total, 11 research communities were constructed with different scientific content. HAT research communities are closely connected to medical, psychiatric, and epidemiological research and very loosely connected to social research. Originality/value – The first mapping of the collaborative network HAT...... researchers using social network methodology...

  5. A collaboration and productiveness analysis of the BPM community

    NARCIS (Netherlands)

    Reijers, H.A.; Song, M.S.; Romero, H.L.; Dayal, U.; Eder, J.; Koehler, J.; Dayal, U.; Eder, J.; Koehler, J.; Reijers, H.A.

    2009-01-01

    The main scientific event for academics working in the field of Business Process Management is the International BPM Conference. In this paper, social network analysis techniques are used to unveil the co-authorship networks that can be derived from the papers presented at this conference. Links

  6. Canada's neglected tropical disease research network: who's in the core-who's on the periphery?

    Directory of Open Access Journals (Sweden)

    Kaye Phillips

    Full Text Available This study designed and applied accessible yet systematic methods to generate baseline information about the patterns and structure of Canada's neglected tropical disease (NTD research network; a network that, until recently, was formed and functioned on the periphery of strategic Canadian research funding.MULTIPLE METHODS WERE USED TO CONDUCT THIS STUDY, INCLUDING: (1 a systematic bibliometric procedure to capture archival NTD publications and co-authorship data; (2 a country-level "core-periphery" network analysis to measure and map the structure of Canada's NTD co-authorship network including its size, density, cliques, and centralization; and (3 a statistical analysis to test the correlation between the position of countries in Canada's NTD network ("k-core measure" and the quantity and quality of research produced.Over the past sixty years (1950-2010, Canadian researchers have contributed to 1,079 NTD publications, specializing in Leishmania, African sleeping sickness, and leprosy. Of this work, 70% of all first authors and co-authors (n = 4,145 have been Canadian. Since the 1990s, however, a network of international co-authorship activity has been emerging, with representation of researchers from 62 different countries; largely researchers from OECD countries (e.g. United States and United Kingdom and some non-OECD countries (e.g. Brazil and Iran. Canada has a core-periphery NTD international research structure, with a densely connected group of OECD countries and some African nations, such as Uganda and Kenya. Sitting predominantly on the periphery of this research network is a cluster of 16 non-OECD nations that fall within the lowest GDP percentile of the network.The publication specialties, composition, and position of NTD researchers within Canada's NTD country network provide evidence that while Canadian researchers currently remain the overall gatekeepers of the NTD research they generate; there is opportunity to leverage

  7. Estudo da rede de co-autoria e da interdisciplinaridade na produção científica com base nos métodos de análise de redes sociais: avaliação do caso do programa de pós-graduação em ciência da informação - PPGCI / UFMG Study of co-authorship in the nets and the interdisciplinarity in the scientific production on the basis of social network analysis methods: evaluation of the posgraduation program in information science - PPGCI / UFMG

    Directory of Open Access Journals (Sweden)

    Antonio Braz de Oliveira e Silva

    2006-01-01

    Full Text Available Este artigo apresenta a Análise de Redes Sociais (ARS como um método a ser aplicado em estudos na Ciência da Informação (CI. Esta é, normalmente, apresentada como uma área do conhecimento interdisciplinar, mas as diferentes linhas de pesquisa existentes nos Programas de Pós-Graduação no Brasil recebem influências de diferentes áreas do conhecimento, ou seja, possuem diferenças em suas interdisciplinaridades. A aplicação da ARS no estudo da rede de co-autoria dos professores do PPGCI/UFMG permite tanto a apresentação do método como a obtenção de resultados empíricos para alimentar a discussão sobre a CI. As redes de colaboração entre os professores refletem, em tese, a participação em programas de pesquisa da área. A colaboração entre professores das diferentes linhas se relaciona com a integração das diferentes interdisciplinaridades que elas apresentam. O texto dá uma visão geral da ARS e apresenta estudos da área, destacando-se a análise de redes de co-autoria. Em seguida, se descreve a metodologia da pesquisa e os principais resultados obtidos da ARS.This paper discusses the Social Network Analysis (SNA as a method to be broadly applied in researches in the Information Scienc (IS field. This science is, normally, presented as an interdisciplinary filed, but the reseaches lines conducted in Brazil have differents relationship with other disciplines, and doing so, dis-similars interdisciplinaries characteristics. The analysis of the co-authorship network of the professors of the PPGCI/UFMG emphasizes both, the strenght of the methodology and the characteristics of the colaboration in the IS. The article gives an overview of the theoretical basis of the SNA, and presents studies about subjects related to the Information Science field that are done applying SNA, mainly the co-authorship network analysis. Finally, the methodological approach of this research and the main results are presented.

  8. Analysis of co-occurrence toponyms in web pages based on complex networks

    Science.gov (United States)

    Zhong, Xiang; Liu, Jiajun; Gao, Yong; Wu, Lun

    2017-01-01

    A large number of geographical toponyms exist in web pages and other documents, providing abundant geographical resources for GIS. It is very common for toponyms to co-occur in the same documents. To investigate these relations associated with geographic entities, a novel complex network model for co-occurrence toponyms is proposed. Then, 12 toponym co-occurrence networks are constructed from the toponym sets extracted from the People's Daily Paper documents of 2010. It is found that two toponyms have a high co-occurrence probability if they are at the same administrative level or if they possess a part-whole relationship. By applying complex network analysis methods to toponym co-occurrence networks, we find the following characteristics. (1) The navigation vertices of the co-occurrence networks can be found by degree centrality analysis. (2) The networks express strong cluster characteristics, and it takes only several steps to reach one vertex from another one, implying that the networks are small-world graphs. (3) The degree distribution satisfies the power law with an exponent of 1.7, so the networks are free-scale. (4) The networks are disassortative and have similar assortative modes, with assortative exponents of approximately 0.18 and assortative indexes less than 0. (5) The frequency of toponym co-occurrence is weakly negatively correlated with geographic distance, but more strongly negatively correlated with administrative hierarchical distance. Considering the toponym frequencies and co-occurrence relationships, a novel method based on link analysis is presented to extract the core toponyms from web pages. This method is suitable and effective for geographical information retrieval.

  9. Criteria for Authorship in Bioethics

    OpenAIRE

    Resnik, David B.; Master, Zubin

    2011-01-01

    Multiple authorship is becoming increasingly common in bioethics research. There are well-established criteria for authorship in empirical bioethics research but not for conceptual research. It is important to develop criteria for authorship in conceptual publications to prevent undeserved authorship and uphold standards of fairness and accountability. This article explores the issue of multiple authorship in bioethics and develops criteria for determining who should be an author on a concept...

  10. Self-Authorship

    Science.gov (United States)

    Baxter Magolda, Marcia B.

    2014-01-01

    Developing self-authorship, or the internal capacity to construct one's beliefs, identity, and social relations, is crucial to successfully navigate adult life. Learning partnerships that engage collegians in interdependent relationships with educators support the transition from dependence on authority to self-authorship during college.

  11. Authorship issues in multi-centre clinical trials

    DEFF Research Database (Denmark)

    Rosenberg, Jacob; Burcharth, Jakob; Pommergaard, Hans-Christian

    2015-01-01

    Discussions about authorship often arise in multi-centre clinical trials. Such trials may involve up to hundreds of contributors of whom some will eventually co-author the final publication. It is, however, often impossible to involve all contributors in the manuscript process sufficiently for th...

  12. Multiple Authorship in Scientific Manuscripts: Ethical Challenges, Ghost and Guest/Gift Authorship, and the Cultural/Disciplinary Perspective.

    Science.gov (United States)

    Teixeira da Silva, Jaime A; Dobránszki, Judit

    2016-10-01

    Multiple authorship is the universal solution to multi-tasking in the sciences. Without a team, each with their own set of expertise, and each involved mostly in complementary ways, a research project will likely not advance quickly, or effectively. Consequently, there is a risk that research goals will not be met within a desired timeframe. Research teams that strictly scrutinize their modus operandi select and include a set of authors that have participated substantially in the physical undertaking of the research, in its planning, or who have contributed intellectually to the ideas or the development of the manuscript. Authorship is not an issue that is taken lightly, and save for dishonest authors, it is an issue that is decided collectively by the authors, usually in sync with codes of conduct established by their research institutes or national ministries of education. Science, technology and medicine (STM) publishers have, through independent, or sometimes coordinated efforts, also established their own sets of guidelines regarding what constitutes valid authorship. However, these are, for the greater part, merely guidelines. A previous and recent analysis of authorship definitions indicates that the definitions in place regarding authorship and its validity by many leading STM publishers is neither uniform, nor standard, despite several of them claiming to follow the guidelines as set forward by the International Committee of Medical Journal Editors or ICMJE. This disparity extends itself to ghost and guest authorship, two key authorship-related issues that are examined in this paper to assess the extent of discrepancies among the same set of STM publishers and what possible influence they might have on publishing ethics.

  13. New developments in publishing related to authorship.

    Science.gov (United States)

    Donev, Doncho

    2014-01-01

    To present the inappropriate types of authorship and practice, and the most recent developments related to basic principles and criteria to a fair system for allocating authorship in scientific publications. An analysis of relevant materials and documents, sources from the internet and published literature and personal experience and observations of the author. Working in multidisciplinary teams is a common feature of modern research processes. The most sensitive question is how to decide on who to acknowledge as author of a multi-authored publication. The pertinence of this question is growing with the increasing importance of individual scientists' publication records for professional status and career. However, discussions about authorship allocation might lead to serious conflicts and disputes among coworkers which could even endanger cooperation and successful completion of a research project. It seems that discussion and education about ethical standards and practical guidelines for fairly allocating authorship are insufficient and the question of ethical practices related to authorship in multi-authored publications remains generally unresolved. It is necessary to work for raising awareness about the importance and need for education about principles of scientific communication and fair allocation of authorship, ethics of research and publication of results. The use of various forms of education in the scientific community, especially young researchers and students, in order to create an ethical environment, is one of the most effective ways to prevent the emergence of scientific and publication dishonesty and fraud, including pathology of authorship.

  14. CEAI: CCM based Email Authorship Identification Model

    DEFF Research Database (Denmark)

    Nizamani, Sarwat; Memon, Nasrullah

    2013-01-01

    In this paper we present a model for email authorship identification (EAI) by employing a Cluster-based Classification (CCM) technique. Traditionally, stylometric features have been successfully employed in various authorship analysis tasks; we extend the traditional feature-set to include some...... more interesting and effective features for email authorship identification (e.g. the last punctuation mark used in an email, the tendency of an author to use capitalization at the start of an email, or the punctuation after a greeting or farewell). We also included Info Gain feature selection based...... reveal that the proposed CCM-based email authorship identification model, along with the proposed feature set, outperforms the state-of-the-art support vector machine (SVM)-based models, as well as the models proposed by Iqbal et al. [1, 2]. The proposed model attains an accuracy rate of 94% for 10...

  15. Global research collaboration: Networks and partners in South East Asia

    OpenAIRE

    Woolley, Richard; Robinson-Garcia, Nicolas; Costas, Rodrigo

    2017-01-01

    This is an empirical paper that addresses the role of bilateral and multilateral international co-authorships in the six leading science systems among the ASEAN group of countries (ASEAN6). The paper highlights the different ways that bilateral and multilateral co-authorships structure global networks and the collaborations of the ASEAN6. The paper looks at the influence of the collaboration styles of major collaborating countries of the ASEAN6, particularly the USA and Japan. It also highlig...

  16. Authorship policies of scientific journals.

    Science.gov (United States)

    Resnik, David B; Tyler, Ana M; Black, Jennifer R; Kissling, Grace

    2016-03-01

    We analysed the authorship policies of a random sample of 600 journals from the Journal Citation Reports database. 62.5% of the journals we sampled had an authorship policy. Having an authorship policy was positively associated with impact factor. Journals from the biomedical sciences and social sciences/humanities were more likely to have an authorship policy than journals from the physical sciences, engineering or mathematical sciences. Among journals with a policy, the most frequent type of policy was guidance on criteria for authorship (99.7%); followed by guidance on acknowledgments (97.3%); requiring that authors make substantial contributions to the research (94.7%); requiring that authors be accountable for the research as a whole (84.8%); guidance on changes in authorship (77.9%); requiring that authors give final approval to the manuscript (77.6%); requiring that authors draft or critically revise the manuscript (71.7%); providing guidance on corporate authorship (58.9%); prohibiting gift, guest or ghost authorship (31.7%); requiring authors to describe their contributions (5.3%); limiting the number of authors for some types of articles (4.0%) and requiring authors to be accountable for their part in the research (1.1%). None of the policies addressed equal contribution statements. Journals that do not have authorship policies should consider adopting or developing ones. Published by the BMJ Publishing Group Limited. For permission to use (where not already granted under a licence) please go to http://www.bmj.com/company/products-services/rights-and-licensing/

  17. Network Analysis of Earth's Co-Evolving Geosphere and Biosphere

    Science.gov (United States)

    Hazen, R. M.; Eleish, A.; Liu, C.; Morrison, S. M.; Meyer, M.; Consortium, K. D.

    2017-12-01

    A fundamental goal of Earth science is the deep understanding of Earth's dynamic, co-evolving geosphere and biosphere through deep time. Network analysis of geo- and bio- `big data' provides an interactive, quantitative, and predictive visualization framework to explore complex and otherwise hidden high-dimension features of diversity, distribution, and change in the evolution of Earth's geochemistry, mineralogy, paleobiology, and biochemistry [1]. Networks also facilitate quantitative comparison of different geological time periods, tectonic settings, and geographical regions, as well as different planets and moons, through network metrics, including density, centralization, diameter, and transitivity.We render networks by employing data related to geographical, paragenetic, environmental, or structural relationships among minerals, fossils, proteins, and microbial taxa. An important recent finding is that the topography of many networks reflects parameters not explicitly incorporated in constructing the network. For example, networks for minerals, fossils, and protein structures reveal embedded qualitative time axes, with additional network geometries possibly related to extinction and/or other punctuation events (see Figure). Other axes related to chemical activities and volatile fugacities, as well as pressure and/or depth of formation, may also emerge from network analysis. These patterns provide new insights into the way planets evolve, especially Earth's co-evolving geosphere and biosphere. 1. Morrison, S.M. et al. (2017) Network analysis of mineralogical systems. American Mineralogist 102, in press. Figure Caption: A network of Phanerozoic Era fossil animals from the past 540 million years includes blue, red, and black circles (nodes) representing family-level taxa and grey lines (links) between coexisting families. Age information was not used in the construction of this network; nevertheless an intrinsic timeline is embedded in the network topology. In

  18. Criteria for authorship in bioethics.

    Science.gov (United States)

    Resnik, David B; Master, Zubin

    2011-10-01

    Multiple authorship is becoming increasingly common in bioethics research. There are well-established criteria for authorship in empirical bioethics research but not for conceptual research. It is important to develop criteria for authorship in conceptual publications to prevent undeserved authorship and uphold standards of fairness and accountability. This article explores the issue of multiple authorship in bioethics and develops criteria for determining who should be an author on a conceptual publication in bioethics. Authorship in conceptual research should be based on contributing substantially to: (1) identifying a topic, problem, or issue to study; (2) reviewing and interpreting the relevant literature; (3) formulating, analyzing, and evaluating arguments that support one or more theses; (4) responding to objections and counterarguments; and (5) drafting the manuscript. Authors of conceptual publications should participate substantially in at least two of areas (1)-(5) and also approve the final version. [corrected].

  19. SAR: Stroke Authorship Recognition

    KAUST Repository

    Shaheen, Sara; Rockwood, Alyn; Ghanem, Bernard

    2015-01-01

    Are simple strokes unique to the artist or designer who renders them? If so, can this idea be used to identify authorship or to classify artistic drawings? Also, could training methods be devised to develop particular styles? To answer these questions, we propose the Stroke Authorship Recognition (SAR) approach, a novel method that distinguishes the authorship of 2D digitized drawings. SAR converts a drawing into a histogram of stroke attributes that is discriminative of authorship. We provide extensive classification experiments on a large variety of data sets, which validate SAR's ability to distinguish unique authorship of artists and designers. We also demonstrate the usefulness of SAR in several applications including the detection of fraudulent sketches, the training and monitoring of artists in learning a particular new style and the first quantitative way to measure the quality of automatic sketch synthesis tools. © 2015 The Eurographics Association and John Wiley & Sons Ltd.

  20. SAR: Stroke Authorship Recognition

    KAUST Repository

    Shaheen, Sara

    2015-10-15

    Are simple strokes unique to the artist or designer who renders them? If so, can this idea be used to identify authorship or to classify artistic drawings? Also, could training methods be devised to develop particular styles? To answer these questions, we propose the Stroke Authorship Recognition (SAR) approach, a novel method that distinguishes the authorship of 2D digitized drawings. SAR converts a drawing into a histogram of stroke attributes that is discriminative of authorship. We provide extensive classification experiments on a large variety of data sets, which validate SAR\\'s ability to distinguish unique authorship of artists and designers. We also demonstrate the usefulness of SAR in several applications including the detection of fraudulent sketches, the training and monitoring of artists in learning a particular new style and the first quantitative way to measure the quality of automatic sketch synthesis tools. © 2015 The Eurographics Association and John Wiley & Sons Ltd.

  1. CEAI: CCM-based email authorship identification model

    Directory of Open Access Journals (Sweden)

    Sarwat Nizamani

    2013-11-01

    Full Text Available In this paper we present a model for email authorship identification (EAI by employing a Cluster-based Classification (CCM technique. Traditionally, stylometric features have been successfully employed in various authorship analysis tasks; we extend the traditional feature set to include some more interesting and effective features for email authorship identification (e.g., the last punctuation mark used in an email, the tendency of an author to use capitalization at the start of an email, or the punctuation after a greeting or farewell. We also included Info Gain feature selection based content features. It is observed that the use of such features in the authorship identification process has a positive impact on the accuracy of the authorship identification task. We performed experiments to justify our arguments and compared the results with other base line models. Experimental results reveal that the proposed CCM-based email authorship identification model, along with the proposed feature set, outperforms the state-of-the-art support vector machine (SVM-based models, as well as the models proposed by Iqbal et al. (2010, 2013 [1,2]. The proposed model attains an accuracy rate of 94% for 10 authors, 89% for 25 authors, and 81% for 50 authors, respectively on Enron dataset, while 89.5% accuracy has been achieved on authors’ constructed real email dataset. The results on Enron dataset have been achieved on quite a large number of authors as compared to the models proposed by Iqbal et al. [1,2].

  2. Scientific cooperation of the "Universidad Distrital Francisco José de Caldas" between the years 2011 and 2015, a Network Social Analisys (NSA approach

    Directory of Open Access Journals (Sweden)

    Jesus David Romero Betancur

    2016-12-01

    Full Text Available Analysis of cooperation networks formed as a result of the co-authorship of scientific texts allows a different view of space in which research activity and relationships, formal and informal, made up of researchers and constitute social capital for them develops and the institution. Based on those recorded in the SciVal platform scientific texts, which include the participation of at least one author or co-author with affiliation with the University Francisco José de Caldas, the networks made up of institutional cooperation are identified in the authorship of these texts, identifying for these and the actors who compose, modularity and the degree of cooperation, obtaining as main result, the relationship of the institutions with which it has been more relevant cooperation during the period analyzed.

  3. Evolutionary features of academic articles co-keyword network and keywords co-occurrence network: Based on two-mode affiliation network

    Science.gov (United States)

    Li, Huajiao; An, Haizhong; Wang, Yue; Huang, Jiachen; Gao, Xiangyun

    2016-05-01

    Keeping abreast of trends in the articles and rapidly grasping a body of article's key points and relationship from a holistic perspective is a new challenge in both literature research and text mining. As the important component, keywords can present the core idea of the academic article. Usually, articles on a single theme or area could share one or some same keywords, and we can analyze topological features and evolution of the articles co-keyword networks and keywords co-occurrence networks to realize the in-depth analysis of the articles. This paper seeks to integrate statistics, text mining, complex networks and visualization to analyze all of the academic articles on one given theme, complex network(s). All 5944 ;complex networks; articles that were published between 1990 and 2013 and are available on the Web of Science are extracted. Based on the two-mode affiliation network theory, a new frontier of complex networks, we constructed two different networks, one taking the articles as nodes, the co-keyword relationships as edges and the quantity of co-keywords as the weight to construct articles co-keyword network, and another taking the articles' keywords as nodes, the co-occurrence relationships as edges and the quantity of simultaneous co-occurrences as the weight to construct keyword co-occurrence network. An integrated method for analyzing the topological features and evolution of the articles co-keyword network and keywords co-occurrence networks is proposed, and we also defined a new function to measure the innovation coefficient of the articles in annual level. This paper provides a useful tool and process for successfully achieving in-depth analysis and rapid understanding of the trends and relationships of articles in a holistic perspective.

  4. Comics and Authorship: An Introduction

    Directory of Open Access Journals (Sweden)

    Maaheen Ahmed

    2017-12-01

    Full Text Available If media authorship can be understood "as a site of cultural tension" (Johnson and Gray 2013, 10, then a deeper understanding of comics authorship will also provide clues regarding the sustaining—and constraining— of creative practices in other media ecologies and intermedial interactions (such as, for instance, adaptations. For comics, this implies combining insights from comics scholars, practitioners as well as agents involved in the publication and dissemination of comics. This issue, building on the findings of extant scholarship on authorship in comics and other media, hopes to provide incentive for further adventures into the (almost unknown of comics authorship.

  5. International collaboration in science: The global map and the network

    NARCIS (Netherlands)

    Leydesdorff, L.; Wagner, C.S.; Park, H.W.; Adams, J.

    2013-01-01

    The network of international co-authorship relations has been dominated by certain European nations and the USA, but this network is rapidly expanding at the global level. Between 40 and 50 countries appear in the center of the international network in 2011, and almost all (201) nations are nowadays

  6. Corpus Linguistics, Network Analysis and Co-occurrence Matrices Corpus Linguistics, Network Analysis and Co-occurrence Matrices

    Directory of Open Access Journals (Sweden)

    Keith Stuart

    2009-12-01

    Full Text Available This article describes research undertaken in order to design a methodology for the reticular representation of knowledge of a specific discourse community. To achieve this goal, a representative corpus of the scientific production of the members of this discourse community (Universidad Politécnica de Valencia, UPV was created. The article presents the practical analysis (frequency, keyword, collocation and cluster analysis that was carried out in the initial phases of the study aimed at establishing the theoretical and practical background and framework for our matrix and network analysis of the scientific discourse of the UPV. In the methodology section, the processes that have allowed us to extract from the corpus the linguistic elements needed to develop co-occurrence matrices, as well as the computer tools used in the research, are described. From these co-occurrence matrices, semantic networks of subject and discipline knowledge were generated. Finally, based on the results obtained, we suggest that it may be viable to extract and to represent the intellectual capital of an academic institution using corpus linguistics methods in combination with the formulations of network theory.En este artículo describimos la investigación que se ha desarrollado en el diseño de una metodología para la representación reticular del conocimiento que se genera en el seno de una institución a partir de un corpus representativo de la producción científica de los integrantes de dicha comunidad discursiva, la Universidad Politécnica de Valencia.. Para ello, presentamos las acciones que se realizaron en las fases iniciales del estudio encaminadas a establecer el marco teórico y práctico en el que se inscribe nuestro análisis. En la sección de metodología se describen las herramientas informáticas utilizadas, así como los procesos que nos permitieron disponer de aquellos elementos presentes en el corpus, que nos llevarían al desarrollo de

  7. Bibliometric Analysis of Female Authorship Trends and Collaboration Dynamics Over JBMR's 30-Year History.

    Science.gov (United States)

    Wininger, Austin E; Fischer, James P; Likine, Elive F; Gudeman, Andrew S; Brinker, Alexander R; Ryu, Jonathan; Maupin, Kevin A; Lunsford, Shatoria; Whipple, Elizabeth C; Loder, Randall T; Kacena, Melissa A

    2017-12-01

    In academia, authorship is considered a currency and is important for career advancement. As the Journal of Bone and Mineral Research (JBMR) is the highest-ranked journal in the field of bone, muscle, and mineral metabolism and is the official publication of the American Society for Bone and Mineral Research, we sought to examine authorship changes over JBMR's 30-year history. Two bibliometric methods were used to collect the data. The "decade method" included all published manuscripts throughout 1 year in each decade over the past 30 years starting with the inaugural year, yielding 746 manuscripts for analysis. The "random method" examined 10% of published manuscripts from each of the 30 years, yielding 652 manuscripts for analysis. Using both methods, the average number of authors per manuscript, numerical location of the corresponding author, number of collaborating institutions, number of collaborating countries, number of printed manuscript pages, and the number of times each manuscript was cited all significantly increased between 1986 and 2015 (p authorship trends over the past 30 years and demonstrate those countries having the most changes and where challenges still exist. © 2017 American Society for Bone and Mineral Research. © 2017 American Society for Bone and Mineral Research.

  8. Authorship and cinema

    OpenAIRE

    Cook, Pam

    2007-01-01

    The chapter reviews the history and cultural impact of debates about authorship and cinema, from the French concept of the 'politique des auteurs' and American and British auteur theory to the structuralist rejection of auteurism and its revision and revival in recent cultural theory. The main text is accompanied by case studies that provide detailed analysis of key films and film-makers.

  9. A Sensemaking Approach to Visual Analytics of Attribute-Rich Social Networks

    Science.gov (United States)

    Gou, Liang

    2012-01-01

    Social networks have become more complex, in particular considering the fact that elements in social networks are not only abstract topological nodes and links, but contain rich social attributes and reflecting diverse social relationships. For example, in a co-authorship social network in a scientific community, nodes in the social network, which…

  10. Gender Differences in the Authorship of Original Research in Pediatric Journals, 2001-2016.

    Science.gov (United States)

    Fishman, Michael; Williams, Wadsworth A; Goodman, Denise M; Ross, Lainie Friedman

    2017-12-01

    To examine the gender of authors of original research in 3 high-impact pediatric journals between 2001 and 2016, given the importance of publishing on academic promotion, and to compare authorship gender with the percentage of women on editorial boards and with academic faculty composition. We assessed the prevalence of female first and senior (last-listed) authorship of original research articles published in 3 pediatric-focused journals Pediatrics, JAMA Pediatrics (entitled Archives of Pediatric and Adolescent Medicine until 2013), and The Journal of Pediatrics. We also examined the gender breakdown of the main editors and the broader editorial boards of these journals. In addition, we examined whether junior female faculty co-authored with male or female senior faculty. Of 3895 original articles, 22 were excluded because the gender of either the first or senior author could not be determined from the name. An analysis of authorship by year showed increasing female representation across the selected journals in both first (39.8% in 2001, 57.7% in 2016) and senior (28.6% in 2001, 38.1% in 2016) authors, respectively. Editorial boards also showed increasing female representation (17.8% in 2001 to 39.8% in 2016). Junior female faculty were more likely to co-author with senior female women (female first and last author); the gap remained unchanged despite the increasing number of women entering pediatrics. Women are underrepresented as authors and editors, although the gap is closing. Junior women are less likely to co-author with senior men, which may be a disservice given current gender disparities in promotion and leadership. Copyright © 2017 Elsevier Inc. All rights reserved.

  11. Co-Inheritance Analysis within the Domains of Life Substantially Improves Network Inference by Phylogenetic Profiling.

    Directory of Open Access Journals (Sweden)

    Junha Shin

    Full Text Available Phylogenetic profiling, a network inference method based on gene inheritance profiles, has been widely used to construct functional gene networks in microbes. However, its utility for network inference in higher eukaryotes has been limited. An improved algorithm with an in-depth understanding of pathway evolution may overcome this limitation. In this study, we investigated the effects of taxonomic structures on co-inheritance analysis using 2,144 reference species in four query species: Escherichia coli, Saccharomyces cerevisiae, Arabidopsis thaliana, and Homo sapiens. We observed three clusters of reference species based on a principal component analysis of the phylogenetic profiles, which correspond to the three domains of life-Archaea, Bacteria, and Eukaryota-suggesting that pathways inherit primarily within specific domains or lower-ranked taxonomic groups during speciation. Hence, the co-inheritance pattern within a taxonomic group may be eroded by confounding inheritance patterns from irrelevant taxonomic groups. We demonstrated that co-inheritance analysis within domains substantially improved network inference not only in microbe species but also in the higher eukaryotes, including humans. Although we observed two sub-domain clusters of reference species within Eukaryota, co-inheritance analysis within these sub-domain taxonomic groups only marginally improved network inference. Therefore, we conclude that co-inheritance analysis within domains is the optimal approach to network inference with the given reference species. The construction of a series of human gene networks with increasing sample sizes of the reference species for each domain revealed that the size of the high-accuracy networks increased as additional reference species genomes were included, suggesting that within-domain co-inheritance analysis will continue to expand human gene networks as genomes of additional species are sequenced. Taken together, we propose that co

  12. Honorary authorship and symbolic violence.

    Science.gov (United States)

    Kovacs, Jozsef

    2017-03-01

    This paper invokes the conceptual framework of Bourdieu to analyse the mechanisms, which help to maintain inappropriate authorship practices and the functions these practices may serve. Bourdieu's social theory with its emphasis on mechanisms of domination can be applied to the academic field, too, where competition is omnipresent, control mechanisms of authorship are loose, and the result of performance assessment can be a matter of symbolic life and death for the researchers. This results in a problem of game-theoretic nature, where researchers' behaviour will be determined more by the logic of competition, than by individual character or motives. From this follows that changing this practice requires institutionalized mechanisms, and change cannot be expected from simply appealing to researchers' individual conscience. The article aims at showing that academic capital (administrative power, seniority) is translated into honorary authorship. With little control, undetected honorary authorship gives the appearance of possessing intellectual capital (scientific merit). In this way a dominant position is made to be seen as natural result of intellectual ability or scientific merit, which makes it more acceptable to those in dominated positions. The final conclusion of this paper is that undemocratic authorship decisions and authorship based performance assessment together are a form of symbolic violence.

  13. Has globalization strengthened South Korea’s national research system? National and international dynamics of the Triple Helix of scientific co-authorship relationships in South Korea

    NARCIS (Netherlands)

    Kwon, K.-S.; Park, H.W.; So, M.; Leydesdorff, L.

    2012-01-01

    We trace the structural patterns of co-authorship between Korean researchers at three institutional types (university, government, and industry) and their international partners in terms of the mutual information generated in these relations. Data were collected from the Web of Science during the

  14. Co-occurrence correlations of heavy metals in sediments revealed using network analysis.

    Science.gov (United States)

    Liu, Lili; Wang, Zhiping; Ju, Feng; Zhang, Tong

    2015-01-01

    In this study, the correlation-based study was used to identify the co-occurrence correlations among metals in marine sediment of Hong Kong, based on the long-term (from 1991 to 2011) temporal and spatial monitoring data. 14 stations out of the total 45 marine sediment monitoring stations were selected from three representative areas, including Deep Bay, Victoria Harbour and Mirs Bay. Firstly, Spearman's rank correlation-based network analysis was conducted as the first step to identify the co-occurrence correlations of metals from raw metadata, and then for further analysis using the normalized metadata. The correlations patterns obtained by network were consistent with those obtained by the other statistic normalization methods, including annual ratios, R-squared coefficient and Pearson correlation coefficient. Both Deep Bay and Victoria Harbour have been polluted by heavy metals, especially for Pb and Cu, which showed strong co-occurrence with other heavy metals (e.g. Cr, Ni, Zn and etc.) and little correlations with the reference parameters (Fe or Al). For Mirs Bay, which has better marine sediment quality compared with Deep Bay and Victoria Harbour, the co-occurrence patterns revealed by network analysis indicated that the metals in sediment dominantly followed the natural geography process. Besides the wide applications in biology, sociology and informatics, it is the first time to apply network analysis in the researches of environment pollutions. This study demonstrated its powerful application for revealing the co-occurrence correlations among heavy metals in marine sediments, which could be further applied for other pollutants in various environment systems. Copyright © 2014 Elsevier Ltd. All rights reserved.

  15. Authors and authorship in brazilian information science journals

    OpenAIRE

    Maria Del Carmen Bohn

    2003-01-01

    This article discusses issues of authorship. It presents the analysis of 86 journal articles with 1528 bibliographical entries. The articles were all published in 2001 in four Brazilian journals of Information Science. Several characteristics of the authors were considered. Among them are the authors’ academic qualification, function and job held; individual and joint authorship, language of publication, papers published by sex and nationality and self-citation. Data show that the most signif...

  16. Scientific cooperation of the "Universidad Distrital Francisco José de Caldas" between the years 2011 and 2015, a Network Social Analisys (NSA) approach

    OpenAIRE

    Jesus David Romero Betancur

    2016-01-01

    Analysis of cooperation networks formed as a result of the co-authorship of scientific texts allows a different view of space in which research activity and relationships, formal and informal, made up of researchers and constitute social capital for them develops and the institution. Based on those recorded in the SciVal platform scientific texts, which include the participation of at least one author or co-author with affiliation with the University Francisco José de Caldas, the networks mad...

  17. Analysis of Trends in Cooperative Network Patterns for KAERI Researchers

    International Nuclear Information System (INIS)

    Chun, Young Choon; Lee, Hyun Soo

    2016-01-01

    There has been a trend toward faster results of research and accelerating inter-disciplinary convergence, under constraints in available resources. Under such reality, national and international cooperation with inter-sectoral research on science-technology-industry is becoming inevitable as a strategic approach for enhancing competitive edge on global dimension. This study gives an analysis on the cooperative network in nuclear research which bears multi-disciplinary technical feature. The study aims to visualize the cooperative network of KAERI(Korea Atomic Energy Research Institute) researchers, as the hub of the network, including academics and industry, with a view to provide insight on strengthening the cooperative network in nuclear research. This study accounted for the paper entries in SCI(E) in 2013 (538 papers) and 2015 (551 papers) with a view to identify cooperative research activities centered for KAERI. On international cooperation, the analysis showed a trend toward, first of all, diversification of partner countries. There were 118 entries of co-authorship with 22 countries in 2013 (41 with USA, 12 with Japan, 9 with India), which evolved to 121 entries in 2015 (34 for USA, 11 with China, 10 each with Japan and India). Secondly, there was a trend toward more number of countries evenly spread in 2015 compared to 2013, except a few major countries like USA, Japan, and India

  18. Analysis of Trends in Cooperative Network Patterns for KAERI Researchers

    Energy Technology Data Exchange (ETDEWEB)

    Chun, Young Choon; Lee, Hyun Soo [KAERI, Daejeon (Korea, Republic of)

    2016-05-15

    There has been a trend toward faster results of research and accelerating inter-disciplinary convergence, under constraints in available resources. Under such reality, national and international cooperation with inter-sectoral research on science-technology-industry is becoming inevitable as a strategic approach for enhancing competitive edge on global dimension. This study gives an analysis on the cooperative network in nuclear research which bears multi-disciplinary technical feature. The study aims to visualize the cooperative network of KAERI(Korea Atomic Energy Research Institute) researchers, as the hub of the network, including academics and industry, with a view to provide insight on strengthening the cooperative network in nuclear research. This study accounted for the paper entries in SCI(E) in 2013 (538 papers) and 2015 (551 papers) with a view to identify cooperative research activities centered for KAERI. On international cooperation, the analysis showed a trend toward, first of all, diversification of partner countries. There were 118 entries of co-authorship with 22 countries in 2013 (41 with USA, 12 with Japan, 9 with India), which evolved to 121 entries in 2015 (34 for USA, 11 with China, 10 each with Japan and India). Secondly, there was a trend toward more number of countries evenly spread in 2015 compared to 2013, except a few major countries like USA, Japan, and India.

  19. Gender disparities in prosthodontics: authorship and leadership, 13 years of observation.

    Science.gov (United States)

    Kongkiatkamon, Suchada; Yuan, Judy Chia-Chun; Lee, Damian J; Knoernschild, Kent L; Campbell, Stephen D; Sukotjo, Cortino

    2010-10-01

    The purpose of this study was to examine gender disparities in prosthodontics by reviewing the trend of female authorship in prosthodontic journals and exploring the role of female leadership in prosthodontic organizations and Advanced Education in Prosthodontic (AEP) programs. Three journals representing the prosthodontic specialty were selected to analyze the percentage of female dentist first and last (senior) authors for the years 1995, 2000, 2005, and 2008. Article inclusion criteria were restricted to the first or last authors who held at least a DMD/DDS/BDS degree and were from U.S. institutions. Data on female leadership in prosthodontic organizations and advanced education programs were collected, and the trends were studied. Descriptive statistics were used to analyze the data. A linear regression analysis was performed to investigate the proportion of female authorship compared to male in the dental literature. A Fisher's Exact Test was performed to contrast differences of female first and last authorship in the selected journals between years 1995 and 2008. Overall, there was no statistically significant linear increase in the proportion of either first or last female authorship compared to male authorship over time. With respect to each journal, the linear regression analysis showed that the increase of first female authorship was statistically significant (p= 0.016) compared to male authorship only in the Journal of Prosthetic Dentistry. The percentage of female presidents of prosthodontic organizations has been very limited. A similar trend was also observed in AEP program director positions. Over the past 13 years, female dentists' participation in prosthodontics literature authorship has not increased significantly in the United States. Furthermore, female involvement in prosthodontics leadership has been limited over the past decades. © 2010 by The American College of Prosthodontists.

  20. Dynamics of co-authorship and productivity across different fields of scientific research.

    Science.gov (United States)

    Parish, Austin J; Boyack, Kevin W; Ioannidis, John P A

    2018-01-01

    We aimed to assess which factors correlate with collaborative behavior and whether such behavior associates with scientific impact (citations and becoming a principal investigator). We used the R index which is defined for each author as log(Np)/log(I1), where I1 is the number of co-authors who appear in at least I1 papers written by that author and Np are his/her total papers. Higher R means lower collaborative behavior, i.e. not working much with others, or not collaborating repeatedly with the same co-authors. Across 249,054 researchers who had published ≥30 papers in 2000-2015 but had not published anything before 2000, R varied across scientific fields. Lower values of R (more collaboration) were seen in physics, medicine, infectious disease and brain sciences and higher values of R were seen for social science, computer science and engineering. Among the 9,314 most productive researchers already reaching Np ≥ 30 and I1 ≥ 4 by the end of 2006, R mostly remained stable for most fields from 2006 to 2015 with small increases seen in physics, chemistry, and medicine. Both US-based authorship and male gender were associated with higher values of R (lower collaboration), although the effect was small. Lower values of R (more collaboration) were associated with higher citation impact (h-index), and the effect was stronger in certain fields (physics, medicine, engineering, health sciences) than in others (brain sciences, computer science, infectious disease, chemistry). Finally, for a subset of 400 U.S. researchers in medicine, infectious disease and brain sciences, higher R (lower collaboration) was associated with a higher chance of being a principal investigator by 2016. Our analysis maps the patterns and evolution of collaborative behavior across scientific disciplines.

  1. Dynamics of co-authorship and productivity across different fields of scientific research.

    Directory of Open Access Journals (Sweden)

    Austin J Parish

    Full Text Available We aimed to assess which factors correlate with collaborative behavior and whether such behavior associates with scientific impact (citations and becoming a principal investigator. We used the R index which is defined for each author as log(Np/log(I1, where I1 is the number of co-authors who appear in at least I1 papers written by that author and Np are his/her total papers. Higher R means lower collaborative behavior, i.e. not working much with others, or not collaborating repeatedly with the same co-authors. Across 249,054 researchers who had published ≥30 papers in 2000-2015 but had not published anything before 2000, R varied across scientific fields. Lower values of R (more collaboration were seen in physics, medicine, infectious disease and brain sciences and higher values of R were seen for social science, computer science and engineering. Among the 9,314 most productive researchers already reaching Np ≥ 30 and I1 ≥ 4 by the end of 2006, R mostly remained stable for most fields from 2006 to 2015 with small increases seen in physics, chemistry, and medicine. Both US-based authorship and male gender were associated with higher values of R (lower collaboration, although the effect was small. Lower values of R (more collaboration were associated with higher citation impact (h-index, and the effect was stronger in certain fields (physics, medicine, engineering, health sciences than in others (brain sciences, computer science, infectious disease, chemistry. Finally, for a subset of 400 U.S. researchers in medicine, infectious disease and brain sciences, higher R (lower collaboration was associated with a higher chance of being a principal investigator by 2016. Our analysis maps the patterns and evolution of collaborative behavior across scientific disciplines.

  2. Co-authoring History: Montpellier, the Vendée, and the Co-authorship of the Sources

    Directory of Open Access Journals (Sweden)

    István M. Szijártó

    2013-10-01

    Full Text Available The discourses of literature and history are generally regarded as two distinct genres. This essay sets out to investigate the use of fictitious, that is, the invented, as well as real elements, in addition to narrative tools in some literary and historical texts to examine whether there is evidence for a fundamental difference between them in this respect. In the first half of the article, from the juxtaposition of Merle’s historical novel, En nos vertes années, to Le Roy Ladurie’s The Beggar and the Professor, we shall see that real and fictitious elements are also interwoven in Merle’s text, just as history uses fictitious elements, necessarily and tacitly, or, in some works, in a rather provocative way. In the second half of this essay, in examining literary and historical narratives of the counter-revolution in the Vendée, it will become evident that historians also use the same narrative techniques as writers to orientate readers. While these findings would confound the normative distinction between history and literature, we cannot, however, finally conclude that there is no fundamental difference between literary fiction and history. Arguing against Alun Munslow, who claims in Authoring the Past that “’doing history’ is an authorial activity,” this present article tries to argue that, while in many aspects writing history is indistinguishable from writing fiction, the historian has co-authors: the sources themselves may enter the process of writing history. This is a conclusion that emerges from the analysis of Simon Schama’s Citizens. His text about the revolt in the Vendée points to a potential advantage of history when compared to literary fiction: historians may feel obliged to change their original point of view under the burden of the fact they themselves have enumerated—something we can call the latent but inherent co-authorship of the sources in historical narratives.

  3. Enabling policy planning and innovation management through patent information and co-authorship network analyses: a study of tuberculosis in Brazil.

    Directory of Open Access Journals (Sweden)

    Alexandre Guimarães Vasconcellos

    Full Text Available INTRODUCTION: New tools and approaches are necessary to facilitate public policy planning and foster the management of innovation in countries' public health systems. To this end, an understanding of the integrated way in which the various actors who produce scientific knowledge and inventions in technological areas of interest operate, where they are located and how they relate to one another is of great relevance. Tuberculosis has been chosen as a model for the present study as it is a current challenge for Brazilian research and innovation. METHODOLOGY: Publications about tuberculosis written by Brazilian authors were accessed from international databases, analyzed, processed with text searching tools and networks of coauthors were constructed and visualized. Patent applications about tuberculosis in Brazil were retrieved from the Brazilian National Institute of Industrial Property (INPI and the European Patent Office databases, through the use of International Patent Classification and keywords and then categorized and analyzed. RESULTS/CONCLUSIONS: Brazilian authorship of articles about tuberculosis jumped from 1% in 1995 to 5% in 2010. Article production and patent filings of national origin have been concentrated in public universities and research institutions while the participation of private industry in the filing of Brazilian patents has remained limited. The goals of national patenting efforts have still not been reached, as up to the present none of the applications filed have been granted a patent. The analysis of all this data about TB publishing and patents clearly demonstrates the importance of maintaining the continuity of Brazil's production development policies as well as government support for infrastructure projects to be employed in transforming the potential of research. This policy, which already exists for the promotion of new products and processes that, in addition to bringing diverse economic benefits to the country

  4. Enabling policy planning and innovation management through patent information and co-authorship network analyses: a study of tuberculosis in Brazil.

    Science.gov (United States)

    Vasconcellos, Alexandre Guimarães; Morel, Carlos Medicis

    2012-01-01

    New tools and approaches are necessary to facilitate public policy planning and foster the management of innovation in countries' public health systems. To this end, an understanding of the integrated way in which the various actors who produce scientific knowledge and inventions in technological areas of interest operate, where they are located and how they relate to one another is of great relevance. Tuberculosis has been chosen as a model for the present study as it is a current challenge for Brazilian research and innovation. Publications about tuberculosis written by Brazilian authors were accessed from international databases, analyzed, processed with text searching tools and networks of coauthors were constructed and visualized. Patent applications about tuberculosis in Brazil were retrieved from the Brazilian National Institute of Industrial Property (INPI) and the European Patent Office databases, through the use of International Patent Classification and keywords and then categorized and analyzed. Brazilian authorship of articles about tuberculosis jumped from 1% in 1995 to 5% in 2010. Article production and patent filings of national origin have been concentrated in public universities and research institutions while the participation of private industry in the filing of Brazilian patents has remained limited. The goals of national patenting efforts have still not been reached, as up to the present none of the applications filed have been granted a patent. The analysis of all this data about TB publishing and patents clearly demonstrates the importance of maintaining the continuity of Brazil's production development policies as well as government support for infrastructure projects to be employed in transforming the potential of research. This policy, which already exists for the promotion of new products and processes that, in addition to bringing diverse economic benefits to the country, will also contribute to effective dealing with public health

  5. Authorship issues in multi-centre clinical trials

    DEFF Research Database (Denmark)

    Rosenberg, Jacob; Burcharth, Jakob; Pommergaard, Hans-Christian

    2015-01-01

    to qualify for authorship as defined by the International Committee of Medical Journal Editors. Therefore, rules for authorship in multi-centre trials are strongly recommended. We propose two contracts to prevent conflicts regarding authorship; both are freely available for use without pay but with reference...... to the original source....

  6. Anonymous Authorship Control for User-Generated Content

    Directory of Open Access Journals (Sweden)

    Suk-Bong LEE

    2007-12-01

    Full Text Available User-Generated Content (UGC is opening up new large market in content services, and more and more people are visiting web sites to share and enjoy UGCs. These trends make many authors to move into online. Authors want to conserve their authorship and expect to publish their UGC anonymously in cases. To meet the requirements, we propose a new authorship control model based on watermarking and metadata. Authors can embed their authorship into their UGC with identities or with anonym. Even though an author publishes his UGC anonymously, he can prove his authorship without unveiling his identity via 5 methods utilizing the proposed authorship model. The proposed model and methods need no TTP and are robust even based on fragile underlying watermarking scheme.

  7. Automated authorship attribution using advanced signal classification techniques.

    Directory of Open Access Journals (Sweden)

    Maryam Ebrahimpour

    Full Text Available In this paper, we develop two automated authorship attribution schemes, one based on Multiple Discriminant Analysis (MDA and the other based on a Support Vector Machine (SVM. The classification features we exploit are based on word frequencies in the text. We adopt an approach of preprocessing each text by stripping it of all characters except a-z and space. This is in order to increase the portability of the software to different types of texts. We test the methodology on a corpus of undisputed English texts, and use leave-one-out cross validation to demonstrate classification accuracies in excess of 90%. We further test our methods on the Federalist Papers, which have a partly disputed authorship and a fair degree of scholarly consensus. And finally, we apply our methodology to the question of the authorship of the Letter to the Hebrews by comparing it against a number of original Greek texts of known authorship. These tests identify where some of the limitations lie, motivating a number of open questions for future work. An open source implementation of our methodology is freely available for use at https://github.com/matthewberryman/author-detection.

  8. Power-Hop: A Pervasive Observation for Real Complex Networks

    Science.gov (United States)

    2016-03-14

    e.g., power grid, the Internet and the web-graph), social (e.g., friendship networks — Facebook , Gowalla—and co- authorship networks ), urban (e.g...Mislove A., Cha M. and Gummadi K.P. On the evolution of user interaction in Facebook . In Proc. Workshop on Online Social Networks 2009. doi...scale-free distribution is pervasive and describes a large variety of networks , ranging from social and urban to technological and biological networks

  9. Authorship for scientific papers: the new challenges.

    Science.gov (United States)

    Garcia, Carla Costa; Martrucelli, Cristina Ribeiro Nabuco; Rossilho, Marilisa de Melo Freire; Denardin, Odilon Victor Porto

    2010-01-01

    The dissemination of the practice of collaborative authorship (coauthorship) in Brazil and in the international scientific community has been accompanied by an increasing occurrence of frauds, manipulations and other deviations in the assignment of responsibility for a scientific paper. This article discusses the criteria for authorship attribution, the reasons for the growing indices of coauthorship and the challenges to determine authorship in electronic journals. Through literature review and case study (bibliographic search in scientific database), it shows ways to avoid that "misbehaviors" related to the authorship attribution affect the credibility of science.

  10. Co-authorship of Iranian Researchers in Science, Social Science, Art and Humanities Citation Indexes in the Web of Science between 2000 and 2006

    Directory of Open Access Journals (Sweden)

    Farideh Osareh

    2010-09-01

    Full Text Available The present study determines the co-authorship factor in the Iranian scientific output between 2000 and 2006 as reflected in the science, social science art and humanities citation indexes made available through the Web of Science database. Webometric indicators were used. The data were extracted in plain text from WOS, analyzed using HistCite software and counted in MS Office Excel program. Of the Total of 25320 documents indexed, 24480 documents were in Science Citation Index, 783 in Social Citation Index and 57 in Art and Humanities index. The findings indicated that co-authorship factor in the period studied had been on the rise. The highest participation rate belonged to the documents with two or three authors. General coauthorship factor was 0.59. The year 2006 had the highest coauthorship factor (0.62 while the year 2000 had the least (0.55. Bradford and Lotka laws were applied to the data sets. The Lotka’s Law only held true for the science citation index. The Bradford’s Law, however, held true for all indexes. In all citation indexes, the United States with 1865 documents (7.38 had the highest degree of coauthorship in Iranian scientific output.

  11. Gender Trends in Radiology Authorship: A 35-Year Analysis.

    Science.gov (United States)

    Piper, Crystal L; Scheel, John R; Lee, Christoph I; Forman, Howard P

    2016-01-01

    The purpose of this study was to describe trends over time in female authorship in the radiology literature and to investigate the tendency of female first authors to publish with female senior authors. Data on the gender of academic physician authors based in the United States for all major articles published in three general radiology journals--Radiology, AJR, and Academic Radiology--were collected and analyzed for the years 1978, 1988, 1998, 2008, and 2013. Multivariate logistic regression was used to identify significant trends over time, and a chi-square test of independence was performed to determine significant relations between the genders of first and senior authors. The gender of 4182 of 4217 (99.17%) authors with MD degrees was determined. The proportion of original research articles published by women as first authors increased from 8.33% in 1978 to 32.35% in 2013 (p < 0.001). The proportion of original research articles with women as senior authors increased from 6.75% in 1978 to 21.90% in 2013 (p < 0.001). Female first and senior authorship increased significantly over time (first author, p < 0.001; senior author, p < 0.001). There was a statistically significant relation between the genders of first and senior authors of original research articles and guest editorials (p < 0.001). Over 35 years, there was a statistically significant upward linear trend of female physician participation in authorship of academic radiology literature. Female first authors were more likely to publish with female senior authors.

  12. "What is Authorship, and What Should it Be? A Survey of Prominent Guidelines for Determining Authorship in Scientific Publications"

    Directory of Open Access Journals (Sweden)

    Jason W. Osborne

    2009-07-01

    Full Text Available Before the mid 20th century most scientific writing was solely authored (Claxton, 2005; Greene, 2007 and thus it is only relatively recently, as science has grown more complex, that the ethical and procedural issues around authorship have arisen. Fields as diverse as medicine (International Committee of Medical Journal Editors, 2008, mathematics (e.g., American Statistical Association, 1999, the physical sciences (e.g., American Chemical Society, 2006, and the social sciences (e.g., American Psychological Association, 2002 have, in recent years, wrestled with what constitutes authorship and how to eliminate problematic practices such as honorary authorship and ghost authorship (e.g., Anonymous, 2004; Claxton, 2005; Manton & English, 2008. As authorship is the coin of the realm in academia (Louis, Holdsworth, Anderson, & Campbell, 2008, it is an ethical issue of singular importance. The goal of this paper is to review prominent and diverse guidelines concerning scientific authorship and to attempt to synthesize existing guidelines into recommendations that represent ethical practices for ensuring credit where (and only where credit is due.

  13. Scientific misconducts and authorship conflicts: Indian perspective

    Directory of Open Access Journals (Sweden)

    Mohanchandra Mandal

    2015-01-01

    Full Text Available This article is a narrative review about how appropriate authorship can be achieved, a brief mention about various scientific misconducts, the reason and consequences of such misconducts and finally, the policies to be adopted by the aspiring authors to avert these problems. The literature search was performed in the Google and PubMed using ′scientific misconduct′, ′honorary/ghost authorship′, ′publish-or-perish′, ′plagiarism′ and other related key words and phrases. More than 300 free full-text articles published from 1990 to 2015 were retrieved and studied. Many consensus views have been presented regarding what constitutes authorship, the authorship order and different scientific misconducts. The conflicts about authorship issues related to publication of dissertation, the area of the grey zone have been discussed. Suggestions from different authorities about improving the existing inappropriate authorship issues have been included.

  14. Analysis of Co-Authorship Indicators, Betweenness Centrality and Structural Holes of the Iranian Nanotechnology Researchers in Science Citation Index (1991-2011

    Directory of Open Access Journals (Sweden)

    Mohammad Hassanzadeh

    2012-12-01

    Full Text Available This research aimed to investigate Iranian papers on nanotechnology area against some scientometrics indicators such as most prolific, most cited and so on. The statistical population were all papers have been published by Iranian researchers on nanotechnology in the Science Citation Index (SCI from 1991 to 7 August 2011 (4605 records that has been done with the aim of identifying, the most prolific, most cited and most effect of Iranian nanotechnology scientists. The results showed that the collaborative index in per-document was 3.39. The highest collaborative index was in 1997 with six authors by per-document. Iranian nanotechnology researchers' degree of collaboration was 0.96 this indicates, greater tendency of nanotechnology authors towards co-authorship. Considering total collaboration coefficient (0.64, nanotechnology authors have shown tendency to production of scientific collaborative document. The highest collaboration coefficient (0.83 And the lowest collaboration coefficient (0.5 have been allocated to the 1997 and 1991 respectively.

  15. cooccurNet: an R package for co-occurrence network construction and analysis.

    Science.gov (United States)

    Zou, Yuanqiang; Wu, Zhiqiang; Deng, Lizong; Wu, Aiping; Wu, Fan; Li, Kenli; Jiang, Taijiao; Peng, Yousong

    2017-06-15

    Previously, we developed a computational model to identify genomic co-occurrence networks that was applied to capture the coevolution patterns within genomes of influenza viruses. To facilitate easy public use of this model, an R package 'cooccurNet' is presented here. 'cooccurNet' includes functionalities of construction and analysis of residues (e.g. nucleotides, amino acids and SNPs) co-occurrence network. In addition, a new method for measuring residues coevolution, defined as residue co-occurrence score (RCOS), is proposed and implemented in 'cooccurNet' based on the co-occurrence network. 'cooccurNet' is publicly available on CRAN repositories under the GPL-3 Open Source License ( http://cran.r-project.org/package=cooccurNet ). taijiao@ibms.pumc.edu.cn or pys2013@hnu.edu.cn. Supplementary data are available at Bioinformatics online. © The Author 2017. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com

  16. Zur Kollaboration in der Wissenschaftlichen Kommission Organisation

    DEFF Research Database (Denmark)

    Blaschke, Steffen

    2015-01-01

    Science is as much bound by single scholars as by schools of thought. Business studies and its disciplines are no exception. A systematic analysis of structural effects in and of co-authorship networks of the past 35 years within German-speaking organization science proves this statement to be ri......Science is as much bound by single scholars as by schools of thought. Business studies and its disciplines are no exception. A systematic analysis of structural effects in and of co-authorship networks of the past 35 years within German-speaking organization science proves this statement...

  17. Challenges of education for authorship in the academic sphere

    Directory of Open Access Journals (Sweden)

    Mary Elizabeth Cerutti-Rizzatti

    2016-09-01

    Full Text Available http://dx.doi.org/10.5007/2175-8026.2016v69n3p63 The theme of this article is 'Education for authorship in university'; it is organized to answer the following question: What challenges does the academic sphere face as regards education for authorship today? In order to answer that question, the text spouses a theoretical-epistemological affiliation of a historical-cultural basis, employing a comprehensive approach in the generation and analysis of data, which derive from a number of studies consolidated or in phase of consolidation in the Research Group 'Writing Culture and Schooling' of Universidade Federal de Santa Catarina. In response to the research question, it is argued that there are, among many others, three major challenges of substantive relevance in education for authorship: (i appropriation of knowledge tensioned by relativistic fundamentals in the school sphere; (ii academic expectations with condescending attitudes; and (iii selective attention as opposed to auscultation. It is argued that an education for authorship in the academic sphere involves the expansion of individuals’ cultural repertoire throughout their education so as they consolidate a condition of autonomy in opposition to heteronomy.

  18. Assessing the Gap in Female Authorship in Radiology: Trends Over the Past Two Decades.

    Science.gov (United States)

    Liang, Teresa; Zhang, Cathy; Khara, Rohan M; Harris, Alison C

    2015-07-01

    The aim of this study was to retrospectively identify trends in the representation of female authorship in prominent general radiology journals over the past 2 decades. A comprehensive search was conducted for all articles published in 1993, 2003, and 2013 in Radiology, the American Journal of Roentgenology (AJR), European Radiology, and Investigative Radiology. The genders of the first and last authors were collected. Chi-square tests were used for statistical analysis, and P values authorship, 24.7% of first authors, and 15.2% of senior authors. The average overall female first and senior authorship grew from 19.7% to 32.1% and from 13.6% to 19.1%, respectively from 1993 to 2013. Female first authorship grew over the past 2 decades in the journals reviewed, with significant growth in AJR and Radiology (P authorship in the individual journals grew from 16.4%-29.1% in 1993, to 29.1%-34.8% in 2013. Female senior authorship also demonstrated growth in the past 2 decades, growing from 4.3%-17.5% in 1993 to 15.5%-23.2% in 2013. There was significant growth in senior female authorship in Radiology (from 12.1% to 19.2%, P = .004) and European Radiology (from 4.3% to 15.5%, P = .0433). Female senior authorship remained significantly lower than first authorship over the past 2 decades (P = .002, P authorship in radiology literature is proportional to their growth in the specialty, they continue to remain a minority, especially in senior authorship, and demonstrate similar participation to other medical specialties. Copyright © 2015 American College of Radiology. Published by Elsevier Inc. All rights reserved.

  19. Guidance for RNA-seq co-expression network construction and analysis: safety in numbers.

    Science.gov (United States)

    Ballouz, S; Verleyen, W; Gillis, J

    2015-07-01

    RNA-seq co-expression analysis is in its infancy and reasonable practices remain poorly defined. We assessed a variety of RNA-seq expression data to determine factors affecting functional connectivity and topology in co-expression networks. We examine RNA-seq co-expression data generated from 1970 RNA-seq samples using a Guilt-By-Association framework, in which genes are assessed for the tendency of co-expression to reflect shared function. Minimal experimental criteria to obtain performance on par with microarrays were >20 samples with read depth >10 M per sample. While the aggregate network constructed shows good performance (area under the receiver operator characteristic curve ∼0.71), the dependency on number of experiments used is nearly identical to that present in microarrays, suggesting thousands of samples are required to obtain 'gold-standard' co-expression. We find a major topological difference between RNA-seq and microarray co-expression in the form of low overlaps between hub-like genes from each network due to changes in the correlation of expression noise within each technology. jgillis@cshl.edu or sballouz@cshl.edu Networks are available at: http://gillislab.labsites.cshl.edu/supplements/rna-seq-networks/ and supplementary data are available at Bioinformatics online. © The Author 2015. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com.

  20. A multilayer network analysis of hashtags in twitter via co-occurrence and semantic links

    Science.gov (United States)

    Türker, Ilker; Sulak, Eyüb Ekmel

    2018-02-01

    Complex network studies, as an interdisciplinary framework, span a large variety of subjects including social media. In social networks, several mechanisms generate miscellaneous structures like friendship networks, mention networks, tag networks, etc. Focusing on tag networks (namely, hashtags in twitter), we made a two-layer analysis of tag networks from a massive dataset of Twitter entries. The first layer is constructed by converting the co-occurrences of these tags in a single entry (tweet) into links, while the second layer is constructed converting the semantic relations of the tags into links. We observed that the universal properties of the real networks like small-world property, clustering and power-law distributions in various network parameters are also evident in the multilayer network of hashtags. Moreover, we outlined that co-occurrences of hashtags in tweets are mostly coupled with semantic relations, whereas a small number of semantically unrelated, therefore random links reduce node separation and network diameter in the co-occurrence network layer. Together with the degree distributions, the power-law consistencies of degree difference, edge weight and cosine similarity distributions in both layers are also appealing forms of Zipf’s law evident in nature.

  1. Citation Analysis and Authorship Patterns of Two Linguistics Journals

    Science.gov (United States)

    Ezema, Ifeanyi J.; Asogwa, Brendan E.

    2014-01-01

    This article analyzes the sources cited in articles published in two linguistics journals, "Applied Linguistics and Journal of Linguistics," from 2001 to 2010. A retrospective descriptive study was conducted using bibliometric indicators, such as types of cited sources, timeliness of cited sources, authorship patterns, rank lists of the…

  2. Concentric network symmetry grasps authors' styles in word adjacency networks

    Science.gov (United States)

    Amancio, Diego R.; Silva, Filipi N.; Costa, Luciano da F.

    2015-06-01

    Several characteristics of written texts have been inferred from statistical analysis derived from networked models. Even though many network measurements have been adapted to study textual properties at several levels of complexity, some textual aspects have been disregarded. In this paper, we study the symmetry of word adjacency networks, a well-known representation of text as a graph. A statistical analysis of the symmetry distribution performed in several novels showed that most of the words do not display symmetric patterns of connectivity. More specifically, the merged symmetry displayed a distribution similar to the ubiquitous power-law distribution. Our experiments also revealed that the studied metrics do not correlate with other traditional network measurements, such as the degree or the betweenness centrality. The discriminability power of the symmetry measurements was verified in the authorship attribution task. Interestingly, we found that specific authors prefer particular types of symmetric motifs. As a consequence, the authorship of books could be accurately identified in 82.5% of the cases, in a dataset comprising books written by 8 authors. Because the proposed measurements for text analysis are complementary to the traditional approach, they can be used to improve the characterization of text networks, which might be useful for applications based on stylistic classification.

  3. Mining author relationship in scholarly networks based on tripartite citation analysis

    Science.gov (United States)

    Wang, Xiaohan; Yang, Siluo

    2017-01-01

    Following scholars in Scientometrics as examples, we develop five author relationship networks, namely, co-authorship, author co-citation (AC), author bibliographic coupling (ABC), author direct citation (ADC), and author keyword coupling (AKC). The time frame of data sets is divided into two periods: before 2011 (i.e., T1) and after 2011 (i.e., T2). Through quadratic assignment procedure analysis, we found that some authors have ABC or AC relationships (i.e., potential communication relationship, PCR) but do not have actual collaborations or direct citations (i.e., actual communication relationship, ACR) among them. In addition, we noticed that PCR and AKC are highly correlated and that the old PCR and the new ACR are correlated and consistent. Such facts indicate that PCR tends to produce academic exchanges based on similar themes, and ABC bears more advantages in predicting potential relations. Based on tripartite citation analysis, including AC, ABC, and ADC, we also present an author-relation mining process. Such process can be used to detect deep and potential author relationships. We analyze the prediction capacity by comparing between the T1 and T2 periods, which demonstrate that relation mining can be complementary in identifying authors based on similar themes and discovering more potential collaborations and academic communities. PMID:29117198

  4. Mining author relationship in scholarly networks based on tripartite citation analysis.

    Directory of Open Access Journals (Sweden)

    Feifei Wang

    Full Text Available Following scholars in Scientometrics as examples, we develop five author relationship networks, namely, co-authorship, author co-citation (AC, author bibliographic coupling (ABC, author direct citation (ADC, and author keyword coupling (AKC. The time frame of data sets is divided into two periods: before 2011 (i.e., T1 and after 2011 (i.e., T2. Through quadratic assignment procedure analysis, we found that some authors have ABC or AC relationships (i.e., potential communication relationship, PCR but do not have actual collaborations or direct citations (i.e., actual communication relationship, ACR among them. In addition, we noticed that PCR and AKC are highly correlated and that the old PCR and the new ACR are correlated and consistent. Such facts indicate that PCR tends to produce academic exchanges based on similar themes, and ABC bears more advantages in predicting potential relations. Based on tripartite citation analysis, including AC, ABC, and ADC, we also present an author-relation mining process. Such process can be used to detect deep and potential author relationships. We analyze the prediction capacity by comparing between the T1 and T2 periods, which demonstrate that relation mining can be complementary in identifying authors based on similar themes and discovering more potential collaborations and academic communities.

  5. World Cities of Scientific Knowledge: Systems, Networks and Potential Dynamics. An Analysis Based on Bibliometric Indicators

    DEFF Research Database (Denmark)

    Matthiessen, Christian Wichmann; Schwarz, Annette Winkel; Find, Søren

    2010-01-01

    This paper is based on identification of the pattern of the upper level of the world city network of knowledge as published in a series of papers.It is our aim to update the findings and relate to the general world city discussion. The structure of the world cities of knowledge network has changed...... over the last decade in favour of south east Asian and south European cities and in disfavour of the traditional centres of North America and north-western Europe. The analysis is based on bibliometric data on the world’s 100 largest cities measured in terms of research output. Then level of co......-authorships between researchers in different cities is an indicators of links and respect, and the number of citations to papers produced by researchers located in each city is an indicator of respect. Finally, one research discipline is selected for an experiment in forecasting future hot spots of research....

  6. CO-AUTHORING SCIENTIFIC PAPERS IN MANAGEMENT: INTERNATIONAL ACADEMICS’ POINTS OF VIEW

    Directory of Open Access Journals (Sweden)

    Manuel Aníbal Silva Portugal Vasconcelos Ferreira

    2015-12-01

    Full Text Available Responding to institutional pressure to publish more papers, and in respected journals, management academics are seeking to increase their productivity by establishing co-authoring ties that speed up the process, from the initial stages of defining the research question to publication in a journal. Understanding the motives, benefits and hazards of co-authorship, especially using the experiences of highly reputed scholars, may help improve the efficiency and quality of research efforts. In this paper, we examine the responses to six questions sent to thirteen prolific international researchers, by email. In essence, we sought to understand such aspects as: the origins of co-authoring ties, the importance of having co-authors, the pitfalls of and methods for coordinating co-authorships, and what constitutes a contribution that warrants co-authorship. Results show that (1 international researchers evaluate their co-authorships positively, (2 many co-authorships emerge from prior supervision or personal proximity, more so than ties to the same institution, (3 the ordering of names is defined a priori and managed actively, (4 the benefits sought after are mainly specialization and complementary competences, (5 co-authorship is given based on actual contribution, albeit there are many forms of contribution, and (6 the pressure to publish, and an increasing difficulty of publishing in the top journals are the drivers of co-authorship. The analyses point to important insights for young Brazilian scholars.

  7. MEANING OF CO-RESIDENCE IN ELDERLY VISION: A STRATEGY FOR COGNITIVE ANALYSIS WITH USE OF SEMANTICS NETWORKS

    Directory of Open Access Journals (Sweden)

    Claudia Ribeiro Santos Lopes

    2015-04-01

    Full Text Available This paper presents a pilot study for cognitive analysis of the concept of co-residence from the perspective of a group of elderly based on the analysis of semantic networks. The data were collected in research with elderly people in a city in the state of Bahia, using the free evocation of words technique. The term inducer was co-residence. Each individual participant of the research should say up to five words that came to his/her mind. Data analysis was interpretively carried out and related to the use of semantic networks with the theoretical support the social and complex network analysis. The elderly gave to the concept of co-residence the meanings of love, happiness, goodness, union and peace, which leads us to believe the emphasis on co-residence, since it represents an interaction leading to a better living and health conditions.

  8. Ongoing ethical issues concerning authorship in biomedical journals: an integrative review.

    Science.gov (United States)

    Kornhaber, Rachel Anne; McLean, Loyola M; Baber, Rodney J

    2015-01-01

    Health professionals publishing within the field of health sciences continue to experience issues concerning appropriate authorship, which have clinical, ethical, and academic implications. This integrative review sought to explore the key issues concerning authorship from a bioethical standpoint, aiming to explore the key features of the authorship debate. Studies were identified through an electronic search, using the PubMed, Cumulative Index to Nursing and Allied Health Literature (CINAHL), and Scopus databases of peer-reviewed research, published between 2009 and 2014, limited to English language research, with search terms developed to reflect the current issues of authorship. From among the 279 papers identified, 20 research papers met the inclusion criteria. Findings were compiled and then arranged to identify themes and relationships. The review incorporated a wide range of authorship issues encompassing equal-credited authors, honorary (guest/gift) and ghost authorship, perception/experiences of authorship, and guidelines/policies. This review suggests that the International Committee of Medical Journal Editors' (ICMJE) recommended guidelines for authorship are not reflected in current authorship practices within the domain of health sciences in both low-and high-impact-factor journals. This devaluing of the true importance of authorship has the potential to affect the validity of authorship, diminish the real contributions of the true authors, and negatively affect patient care.

  9. Ongoing ethical issues concerning authorship in biomedical journals: an integrative review

    Science.gov (United States)

    Kornhaber, Rachel Anne; McLean, Loyola M; Baber, Rodney J

    2015-01-01

    Health professionals publishing within the field of health sciences continue to experience issues concerning appropriate authorship, which have clinical, ethical, and academic implications. This integrative review sought to explore the key issues concerning authorship from a bioethical standpoint, aiming to explore the key features of the authorship debate. Studies were identified through an electronic search, using the PubMed, Cumulative Index to Nursing and Allied Health Literature (CINAHL), and Scopus databases of peer-reviewed research, published between 2009 and 2014, limited to English language research, with search terms developed to reflect the current issues of authorship. From among the 279 papers identified, 20 research papers met the inclusion criteria. Findings were compiled and then arranged to identify themes and relationships. The review incorporated a wide range of authorship issues encompassing equal-credited authors, honorary (guest/gift) and ghost authorship, perception/experiences of authorship, and guidelines/policies. This review suggests that the International Committee of Medical Journal Editors’ (ICMJE) recommended guidelines for authorship are not reflected in current authorship practices within the domain of health sciences in both low-and high-impact-factor journals. This devaluing of the true importance of authorship has the potential to affect the validity of authorship, diminish the real contributions of the true authors, and negatively affect patient care. PMID:26257520

  10. [Weighted gene co-expression network analysis in biomedicine research].

    Science.gov (United States)

    Liu, Wei; Li, Li; Ye, Hua; Tu, Wei

    2017-11-25

    High-throughput biological technologies are now widely applied in biology and medicine, allowing scientists to monitor thousands of parameters simultaneously in a specific sample. However, it is still an enormous challenge to mine useful information from high-throughput data. The emergence of network biology provides deeper insights into complex bio-system and reveals the modularity in tissue/cellular networks. Correlation networks are increasingly used in bioinformatics applications. Weighted gene co-expression network analysis (WGCNA) tool can detect clusters of highly correlated genes. Therefore, we systematically reviewed the application of WGCNA in the study of disease diagnosis, pathogenesis and other related fields. First, we introduced principle, workflow, advantages and disadvantages of WGCNA. Second, we presented the application of WGCNA in disease, physiology, drug, evolution and genome annotation. Then, we indicated the application of WGCNA in newly developed high-throughput methods. We hope this review will help to promote the application of WGCNA in biomedicine research.

  11. Honorary authorship in radiologic research articles: assessment of frequency and associated factors.

    Science.gov (United States)

    Eisenberg, Ronald L; Ngo, Long; Boiselle, Philip M; Bankier, Alexander A

    2011-05-01

    To quantify the frequency of perceived honorary authorship in radiologic journals and to identify specific factors that increase its prevalence. This study qualified for exempt status by the institutional review board. An electronic survey was sent to first authors of all original research articles published in Radiology and European Radiology over 3 years. Questions included guidelines used for determining authorship, contributions of coauthors, the perception of honorary authorship, and demographic information. Univariable analysis of sample proportions was performed by using χ(2) tests. Multivariable logistic regression models were used to assess the independent factors that were associated with the probability of perceiving honorary authorship. Of the 392 (29.3%) of 1338 first authors who responded to the survey, 102 (26.0%) perceived that one or more coauthors did not make sufficient contributions to merit being included as an author. Of the 392 respondents, 231 (58.9%) stated that one or more coauthors performed only "nonauthor" tasks according to International Committee of Medical Journal Editors criteria. Factors associated with an increased first-author perception of honorary authorship included lower academic rank (adjusted odds ratio [OR]: 2.89; 95% confidence interval [CI]: 1.66, 5.06), as well as working in an environment in which the section or department head was automatically listed as an author (adjusted OR: 3.80; 95% CI: 2.13, 6.79). The percentage of honorary authorship was significantly higher (P = .019) among respondents who did not follow journal requirements for authorship. The rate of perceived honorary authorship (overall, 26.0%) was substantially more frequent among respondents of lower academic rank and in those working in an environment in which their section or department head was automatically listed as an author. http://radiology.rsna.org/lookup/suppl/doi:10.1148/radiol.11101500/-/DC1. RSNA, 2011

  12. The evolution analysis of listed companies co-holding non-listed financial companies based on two-mode heterogeneous networks

    Science.gov (United States)

    An, Pengli; Li, Huajiao; Zhou, Jinsheng; Chen, Fan

    2017-10-01

    Complex network theory is a widely used tool in the empirical research of financial markets. Two-mode and multi-mode networks are new trends and represent new directions in that they can more accurately simulate relationships between entities. In this paper, we use data for Chinese listed companies holding non-listed financial companies over a ten-year period to construct two networks: a two-mode primitive network in which listed companies and non-listed financial companies are considered actors and events, respectively, and a one-mode network that is constructed based on the decreasing-mode method in which listed companies are considered nodes. We analyze the evolution of the listed company co-holding network from several perspectives, including that of the whole network, of information control ability, of implicit relationships, of community division and of small-world characteristics. The results of the analysis indicate that (1) China's developing stock market affects the share-holding condition of listed companies holding non-listed financial companies; (2) the information control ability of co-holding networks is focused on a few listed companies and the implicit relationship of investment preference between listed companies is determined by the co-holding behavior; (3) the community division of the co-holding network is increasingly obvious, as determined by the investment preferences among listed companies; and (4) the small-world characteristics of the co-holding network are increasingly obvious, resulting in reduced communication costs. In this paper, we conduct an evolution analysis and develop an understanding of the factors that influence the listed companies co-holding network. This study will help illuminate research on evolution analysis.

  13. Increased number of papers co-authored by professor and his students in humanities and social sciences journals published in Korea

    Directory of Open Access Journals (Sweden)

    Rae Seong Hong

    2017-02-01

    Full Text Available Humanities and social sciences studies in Korea have remarkably low rates of co-authorship between professors and students. We chose a bibliometrics-based approach to characterize changes in the ratio of joint authorship between professors and students. Articles classified in the humanities and social sciences sectors that were published in journals registered in the Korean Citation Index during 2 phases over a 10-year period—2004 to 2006 (phase 1 and 2011 to 2013 (phase 2—were used as the main source for the analysis. The study results can be summarized as follows: first, the overall number of co-authored articles drastically increased from phase 1 to phase 2; the percentage of co-authorship articles increased from 34.8% to 47.7%, and the percentage of co-authorship between students and professors rose from 9.9% to 20.7%. This trend was particularly noticeable in the social sciences, such as accounting, social welfare, and economics/business administration. Second, papers written by scholars from Seoul National University, Yonsei University, and Korea University were often published in high-impact factor journals. Among those articles, the rate of professor-student co-authorship increased by 21.6% for 7 years. Third, the increase in professor-student co-authored articles published in high- impact factor journals was even sharper. These findings indicate that perceptions of professor-student co-authorship have changed in the humanities and social sciences. In the near future, positive perceptions toward joint research and joint authorship between professors and students are expected to become more widespread.

  14. Honorary authorship

    DEFF Research Database (Denmark)

    Basford, Jeffrey R; Frontera, Walter R; Sjölund, Bengt H.

    2014-01-01

    This issue of Archives of Physical Medicine and Rehabilitation includes an article by Rajasekaran et al that addresses the persistent, difficult, and unsettled issue of unwarranted authorship as it applies to physical medicine and rehabilitation. The findings that it exists and that its frequency...

  15. Eugenics and moral authorship. Analysis of a Habermas´s thesis

    Directory of Open Access Journals (Sweden)

    César Ortega Esquembre

    2017-08-01

    Full Text Available The aim of this paper is to study the Jürgen Habermas´s vision of genetic manipulation; in particular, it will be addressed critically his assumption that the genetically engineered person would loose his awareness of authorship. In the author´s view, positive genetic intervention —one that is to genetically enhance the subject— would eliminate the awareness of authorship of that subject, as well as his self-understanding as moral agent. Two aspects of the question will be approached: firstly, the correctness or incorrectness of Habermas´s thesis. Secondly, the relevance of the thesis to oppose positive eugenics. Could be other arguments considered within Habermas´s conceptual framework to oppose positive eugenics?

  16. Co-expression network analysis of duplicate genes in maize (Zea mays L.) reveals no subgenome bias.

    Science.gov (United States)

    Li, Lin; Briskine, Roman; Schaefer, Robert; Schnable, Patrick S; Myers, Chad L; Flagel, Lex E; Springer, Nathan M; Muehlbauer, Gary J

    2016-11-04

    Gene duplication is prevalent in many species and can result in coding and regulatory divergence. Gene duplications can be classified as whole genome duplication (WGD), tandem and inserted (non-syntenic). In maize, WGD resulted in the subgenomes maize1 and maize2, of which maize1 is considered the dominant subgenome. However, the landscape of co-expression network divergence of duplicate genes in maize is still largely uncharacterized. To address the consequence of gene duplication on co-expression network divergence, we developed a gene co-expression network from RNA-seq data derived from 64 different tissues/stages of the maize reference inbred-B73. WGD, tandem and inserted gene duplications exhibited distinct regulatory divergence. Inserted duplicate genes were more likely to be singletons in the co-expression networks, while WGD duplicate genes were likely to be co-expressed with other genes. Tandem duplicate genes were enriched in the co-expression pattern where co-expressed genes were nearly identical for the duplicates in the network. Older gene duplications exhibit more extensive co-expression variation than younger duplications. Overall, non-syntenic genes primarily from inserted duplications show more co-expression divergence. Also, such enlarged co-expression divergence is significantly related to duplication age. Moreover, subgenome dominance was not observed in the co-expression networks - maize1 and maize2 exhibit similar levels of intra subgenome correlations. Intriguingly, the level of inter subgenome co-expression was similar to the level of intra subgenome correlations, and genes from specific subgenomes were not likely to be the enriched in co-expression network modules and the hub genes were not predominantly from any specific subgenomes in maize. Our work provides a comprehensive analysis of maize co-expression network divergence for three different types of gene duplications and identifies potential relationships between duplication types

  17. Bibliometric Analysis of Gender Authorship Trends and Collaboration Dynamics Over 30 Years of Spine 1985 to 2015.

    Science.gov (United States)

    Brinker, Alexander R; Liao, Jane L; Kraus, Kent R; Young, Jocelyn; Sandelski, Morgan; Mikesell, Carter; Robinson, Daniel; Adjei, Michael; Lunsford, Shatoria D; Fischer, James; Kacena, Melissa A; Whipple, Elizabeth C; Loder, Randall T

    2018-07-15

    A bibliometric analysis. The aim of this article was to study bibliometric changes over the last 30 years of Spine. These trends are important regarding academic publication productivity. Inflation in authorship number and other bibliometric variables has been described in the scientific literature. The issue of author gender is taking on increasing importance, as efforts are being made to close the gender gap. From 1985 to 2015, 10-year incremental data for several bibliometric variables were collected, including author gender. Standard bivariate statistical analyses were performed. Trends over time were assessed by the Cochran linear trend. A P < 0.05 was considered statistically significant. Inclusion criteria were met for 1566 manuscripts. The majority of the manuscripts were from North America (51.2%), Europe (25.2%), and Asia (20.8%). The number of manuscripts, authors, countries, pages, and references all increased from 1985 to 2015. There was a slight increase in female first authors over time (17.5% to 18.4%, P = 0.048). There was no gender change over time for corresponding authors (14.3% to 14.0%, P = 0.29). There was an 88% increase in the percentage of female first authors having male corresponding authors (P = 0.00004), and a 123% increase in male first authors having female corresponding authors (P = 0.0002). The 14% to 18% of female authors in Spine is higher than the ∼5% female membership of the Scoliosis Research Society and North American Spine Society. Manuscripts in Spine over the past 30 years have shown a significant increase in the number of authors, collaborating institutions and countries, printed pages, references, and number of times each manuscript was cited. There has been a mild increase in female first authorship, but none in corresponding authorship. Increases in female authorship will likely require recruitment of more females into the discipline rather than providing females in the discipline with authorship

  18. Evolution of the social network of scientific collaborations

    Science.gov (United States)

    Barabási, A. L.; Jeong, H.; Néda, Z.; Ravasz, E.; Schubert, A.; Vicsek, T.

    2002-08-01

    The co-authorship network of scientists represents a prototype of complex evolving networks. In addition, it offers one of the most extensive database to date on social networks. By mapping the electronic database containing all relevant journals in mathematics and neuro-science for an 8-year period (1991-98), we infer the dynamic and the structural mechanisms that govern the evolution and topology of this complex system. Three complementary approaches allow us to obtain a detailed characterization. First, empirical measurements allow us to uncover the topological measures that characterize the network at a given moment, as well as the time evolution of these quantities. The results indicate that the network is scale-free, and that the network evolution is governed by preferential attachment, affecting both internal and external links. However, in contrast with most model predictions the average degree increases in time, and the node separation decreases. Second, we propose a simple model that captures the network's time evolution. In some limits the model can be solved analytically, predicting a two-regime scaling in agreement with the measurements. Third, numerical simulations are used to uncover the behavior of quantities that could not be predicted analytically. The combined numerical and analytical results underline the important role internal links play in determining the observed scaling behavior and network topology. The results and methodologies developed in the context of the co-authorship network could be useful for a systematic study of other complex evolving networks as well, such as the world wide web, Internet, or other social networks.

  19. Integrative analysis of many weighted co-expression networks using tensor computation.

    Directory of Open Access Journals (Sweden)

    Wenyuan Li

    2011-06-01

    Full Text Available The rapid accumulation of biological networks poses new challenges and calls for powerful integrative analysis tools. Most existing methods capable of simultaneously analyzing a large number of networks were primarily designed for unweighted networks, and cannot easily be extended to weighted networks. However, it is known that transforming weighted into unweighted networks by dichotomizing the edges of weighted networks with a threshold generally leads to information loss. We have developed a novel, tensor-based computational framework for mining recurrent heavy subgraphs in a large set of massive weighted networks. Specifically, we formulate the recurrent heavy subgraph identification problem as a heavy 3D subtensor discovery problem with sparse constraints. We describe an effective approach to solving this problem by designing a multi-stage, convex relaxation protocol, and a non-uniform edge sampling technique. We applied our method to 130 co-expression networks, and identified 11,394 recurrent heavy subgraphs, grouped into 2,810 families. We demonstrated that the identified subgraphs represent meaningful biological modules by validating against a large set of compiled biological knowledge bases. We also showed that the likelihood for a heavy subgraph to be meaningful increases significantly with its recurrence in multiple networks, highlighting the importance of the integrative approach to biological network analysis. Moreover, our approach based on weighted graphs detects many patterns that would be overlooked using unweighted graphs. In addition, we identified a large number of modules that occur predominately under specific phenotypes. This analysis resulted in a genome-wide mapping of gene network modules onto the phenome. Finally, by comparing module activities across many datasets, we discovered high-order dynamic cooperativeness in protein complex networks and transcriptional regulatory networks.

  20. Publication practices and responsible authorship: a review article

    Directory of Open Access Journals (Sweden)

    Elvis E. Tarkang

    2017-06-01

    Full Text Available Dissemination of research findings through the publication of one’s work or a group of contributors is an important part of the research process, as this allows the passing on of benefits to a much wider community. In whatever evocative form this dissemination may take, the onus lies on the author(s to ensure adherence to the code of ethics as it pertains to the integrity of the information being put out. We publish because we want our findings to be adapted into practice and application, or in some cases may be relevant to policy makers in decision-making. To a large extent in the field of academia, successful publication improves opportunities for academic funding and promotion whilst enhancing scientific and scholarly achievement and repute. A situation may be compromised where intellectual contributions to a scientific investigation do not adhere to the four key guidelines of scholarship, authorship, approval and agreement as well as the protocols of ensuring good publication ethics. The objective of this review is to lay emphasis on universal standards for manuscript authorship and to fostering good practices. This in our view will bring authorship credit and accountability to the attention of our colleagues and readers at large. To achieve this, a systematic and critical review of the literature was undertaken. Electronic databases, academic journals and books from various sources were accessed. Several key search terms relating to responsible authorship, common authorship malpractices, conflict of interest, universal publication guidelines and other authorship related issues, were used. Only references deemed useful from relevant texts and journal articles were included. In this paper, the authors have sought to highlight the pitfalls researchers sometimes entangle themselves within an act of compromise thereby impinging on the ethical and professional responsibilities for the content of a paper under consideration. This article

  1. Women authorship in radiology research in France: An analysis of the last three decades.

    Science.gov (United States)

    Pyatigorskaya, N; Di Marco, L

    2017-11-01

    The aim of this study was to evaluate the evolution of women authorship in France and to analyze the recent trends of the evolution of gender differences in French academic radiology. A retrospective bibliometric analysis was performed by searching for articles published in Diagnostic and Interventional Imaging (Diagn Interv Imaging) and in Journal de Radiologie (J Radiol) in Pubmed over the last three decades. For each of these articles, we determined the gender of the first and last author. The specific radiological field of each article was also determined. The proportion of women authors has significantly increased from 12% in 1984 to 34% in 2014 (Pauthorship in Diagnostic and Interventional Imaging has increased over the last years together with the proportion of women first authors. However, the fraction of women last authors is still underrepresented. More women need to become leaders in radiological research to contribute to stimulate women authorship. Copyright © 2017 Éditions françaises de radiologie. Published by Elsevier Masson SAS. All rights reserved.

  2. Using gene co-expression network analysis to predict biomarkers for chronic lymphocytic leukemia

    Directory of Open Access Journals (Sweden)

    Borlawsky Tara B

    2010-10-01

    Full Text Available Abstract Background Chronic lymphocytic leukemia (CLL is the most common adult leukemia. It is a highly heterogeneous disease, and can be divided roughly into indolent and progressive stages based on classic clinical markers. Immunoglobin heavy chain variable region (IgVH mutational status was found to be associated with patient survival outcome, and biomarkers linked to the IgVH status has been a focus in the CLL prognosis research field. However, biomarkers highly correlated with IgVH mutational status which can accurately predict the survival outcome are yet to be discovered. Results In this paper, we investigate the use of gene co-expression network analysis to identify potential biomarkers for CLL. Specifically we focused on the co-expression network involving ZAP70, a well characterized biomarker for CLL. We selected 23 microarray datasets corresponding to multiple types of cancer from the Gene Expression Omnibus (GEO and used the frequent network mining algorithm CODENSE to identify highly connected gene co-expression networks spanning the entire genome, then evaluated the genes in the co-expression network in which ZAP70 is involved. We then applied a set of feature selection methods to further select genes which are capable of predicting IgVH mutation status from the ZAP70 co-expression network. Conclusions We have identified a set of genes that are potential CLL prognostic biomarkers IL2RB, CD8A, CD247, LAG3 and KLRK1, which can predict CLL patient IgVH mutational status with high accuracies. Their prognostic capabilities were cross-validated by applying these biomarker candidates to classify patients into different outcome groups using a CLL microarray datasets with clinical information.

  3. A social network analysis approach to alcohol use and co-occurring addictive behavior in young adults.

    Science.gov (United States)

    Meisel, Matthew K; Clifton, Allan D; MacKillop, James; Goodie, Adam S

    2015-12-01

    The current study applied egocentric social network analysis (SNA) to investigate the prevalence of addictive behavior and co-occurring substance use in college students' networks. Specifically, we examined individuals' perceptions of the frequency of network members' co-occurring addictive behavior and investigated whether co-occurring addictive behavior is spread evenly throughout networks or is more localized in clusters. We also examined differences in network composition between individuals with varying levels of alcohol use. The study utilized an egocentric SNA approach in which respondents ("egos") enumerated 30 of their closest friends, family members, co-workers, and significant others ("alters") and the relations among alters listed. Participants were 281 undergraduates at a large university in the Southeastern United States. Robust associations were observed among the frequencies of gambling, smoking, drinking, and using marijuana by network members. We also found that alters tended to cluster together into two distinct groups: one cluster moderate-to-high on co-occurring addictive behavior and the other low on co-occurring addictive behavior. Lastly, significant differences were present when examining egos' perceptions of alters' substance use between the networks of at-risk, light, and nondrinkers. These findings provide empirical evidence of distinct clustering of addictive behavior among young adults and suggest the promise of social network-based interventions for this cohort. Copyright © 2015. Published by Elsevier Ltd.

  4. Gendered Authorship and Demographic Research: An Analysis of 50 Years of Demography.

    Science.gov (United States)

    Krapf, Sandra; Kreyenfeld, Michaela; Wolf, Katharina

    2016-08-01

    Demography, the official journal of the Population Association of America, has been given the highest rating among demographic journals by the Social Sciences Citation Index (SSCI). Our aim here is to investigate the development of research subfields and female authorship in Demography over the last 50 years. We find that female authorship in Demography has risen considerably since the 1980s and that currently a woman is about as likely as a man to be the sole or the first author of a paper published in the journal. However, we find some differences by subfield. Women seem to be overrepresented in the "family and household" research subfield but underrepresented in the "mortality and health" and "data and methods" categories.

  5. Aspects of JASIS Authorship through Five Decades.

    Science.gov (United States)

    Lipetz, Ben-Ami

    1999-01-01

    Presents results of a survey of five volumes of the "Journal of the American Society for Information Science (JASIS)," one for each decade of JASIS's existence. Discusses findings related to growth of JASIS and authorship, national versus international authorship, coauthoring of papers, author productivity, author gender, author…

  6. MEANING OF CO-RESIDENCE IN ELDERLY VISION: A STRATEGY FOR COGNITIVE ANALYSIS WITH USE OF SEMANTICS NETWORKS

    Directory of Open Access Journals (Sweden)

    Claudia Ribeiro Santos Lopes

    2015-06-01

    Full Text Available This paper presents a pilot study for cognitive analysis of the concept of co-residence from the perspective of a group of elderly based on the analysis of semantic networks. The data were collected in research with elderly people in a city in the state of Bahia, using the free evocation of words technique. The term inducer was co-residence. Each individual participant of the research should say up to five words that came to his/her mind. Data analysis was interpretively carried out and related to the use of semantic networks with the theoretical support the social and complex network analysis. The elderly gave to the concept of coresidence the meanings of love, happiness, goodness, union and peace, which leads us to believe the emphasis on co-residence, since it represents an interaction leading to a better living and health conditions.

  7. 6th Workshop on Complex Networks

    CERN Document Server

    Simini, Filippo; Uzzo, Stephen; Wang, Dashun

    2015-01-01

    Elucidating the spatial and temporal dynamics of how things connect has become one of the most important areas of research in the 21st century. Network science now pervades nearly every science domain, resulting in new discoveries in a host of dynamic social and natural systems, including: how neurons connect and communicate in the brain, how information percolates within and among social networks, the evolution of science research through co-authorship networks, the spread of epidemics, and many other complex phenomena. Over the past decade, advances in computational power have put the tools of network analysis in the hands of increasing numbers of scientists, enabling more explorations of our world than ever before possible. Information science, social sciences, systems biology, ecosystems ecology, neuroscience and physics all benefit from this movement, which combines graph theory with data sciences to develop and validate theories about the world around us. This book brings together cutting-edge research ...

  8. 5th Workshop on Complex Networks

    CERN Document Server

    Menezes, Ronaldo; Omicini, Andrea; Poncela-Casasnovas, Julia

    2014-01-01

    A network is a mathematical object consisting of a set of points that are connected to each other in some fashion by lines. It turns out this simple description corresponds to a bewildering array of systems in the real world, ranging from technological ones such as the Internet and World Wide Web, biological networks such as that of connections of the nervous systems, food webs, or  protein interactions, infrastructural systems such as networks of roads, airports or the power-grid, to patterns of social and professional relationships such as friendship, sex partners, network of Hollywood actors, co-authorship networks and many more. Recent years have witnessed a substantial amount of interest within the scientific community in the properties of these networks. The emergence of the internet in particular, coupled with the widespread availability of inexpensive computing resources has facilitated studies ranging from large scale empirical analysis of networks in the real world, to the development...

  9. The Intellectual Structure of Metacognitive Scaffolding in Science Education: A Co-Citation Network Analysis

    Science.gov (United States)

    Tang, Kai-Yu; Wang, Chia-Yu; Chang, Hsin-Yi; Chen, Sufen; Lo, Hao-Chang; Tsai, Chin-Chung

    2016-01-01

    The issues of metacognitive scaffolding in science education (MSiSE) have become increasingly popular and important. Differing from previous content reviews, this study proposes a series of quantitative computer-based analyses by integrating document co-citation analysis, social network analysis, and exploratory factor analysis to explore the…

  10. Authors and authorship in brazilian information science journals

    Directory of Open Access Journals (Sweden)

    Maria Del Carmen Bohn

    2003-01-01

    Full Text Available This article discusses issues of authorship. It presents the analysis of 86 journal articles with 1528 bibliographical entries. The articles were all published in 2001 in four Brazilian journals of Information Science. Several characteristics of the authors were considered. Among them are the authors’ academic qualification, function and job held; individual and joint authorship, language of publication, papers published by sex and nationality and self-citation. Data show that the most significant number of papers are published by the academic community; they also show that publishing partnerships are more common among members of the same academic institution and that the male contribution to publications has lately increased. The analysis furthermore shows that self-citations privilege papers given at academic events and articles. However the preferred citations in articles are book chapters, journal articles and electronic texts. Finally, data show that most of the referred bibliography is recent, but they also show a certain degree of inbreeding since there are few references of interdisciplinary nature.

  11. Gender trends in authorship in oral and maxillofacial surgery literature: A 30-year analysis.

    Science.gov (United States)

    Nkenke, Emeka; Seemann, Rudolf; Vairaktaris, Elefterios; Schaller, Hans-Günter; Rohde, Maximilian; Stelzle, Florian; Knipfer, Christian

    2015-07-01

    The aim of the present study was to perform a bibliometric analysis of the gender distribution of first and senior authorships in important oral and maxillofacial journals over the 30-year period from 1980 to 2010. Articles published in three representative oral and maxillofacial surgery journals were selected. The years 1980, 1990, 2000, and 2010 were chosen as representative points in time for article selection. Original research, case reports, technical notes, and reviews were included in the analysis. Case reports and technical notes were pooled in one group. For each article, the gender of the first author as well as that of the senior author was determined, based on the inspection of their first name. The type of article was determined and the country of origin of the article was documented. A total 1412 articles were subjected to the data analysis. A significant increase in female authorship in oral and maxillofacial surgery could be identified over the chosen 30-year period. However, the number of publications by male authors was still significantly higher at all points of time, exceeding those of female authors by at least 3.8 fold in 2010. As there is a trend towards feminization of medicine and dentistry, the results of the present study may serve as the basis for further analysis of the current situation, and the identification of necessary actions to accelerate the closure of the gender gap in publishing in oral and maxillofacial surgery. Copyright © 2015 European Association for Cranio-Maxillo-Facial Surgery. Published by Elsevier Ltd. All rights reserved.

  12. Exploring the Relationship between the Three Dimensions of Self-Authorship

    Science.gov (United States)

    Pizzolato, Jane Elizabeth; Olson, Avery B.

    2016-01-01

    Through a year-long study of welfare-to-work students in the community college CalWORKs program, we investigated what self-authorship development looks like by examining developmental progress, and whether there are patterns in development along the three dimensions of self-authorship. Findings demonstrate progress toward self-authorship, but…

  13. [Ethical conflicts in the authorship of scientific papers].

    Science.gov (United States)

    von Oetinger, Astrid; Sadarangani, Kabir P; Salas, Sofía P

    2016-11-01

    The frequency of conflicts about authorship of publications has increased along with the increase in the number of people involved in scientific work. Some of the factors that strongly influence the generation of conflicts and malpractices in authorship definition of scientific publications are the pressure of academia, economic incentives from the pharmaceutical industry in the field of biomedicine and authors’ wishes and expectations of recognition, among other factors. The article analyzes this problem, increasingly common in the field of medicine and related areas. Special attention is devoted to the prevailing laws in our country and international guidelines related to intellectual property and authorship of scientific publications, respectively. However, the ethical commitment, intellectual honesty and truthfulness of each of the authors about what is reported seems to be the decisive factor for the solution to these authorship conflicts.

  14. Honorary and ghost authorship in nursing publications.

    Science.gov (United States)

    Kennedy, Maureen Shawn; Barnsteiner, Jane; Daly, John

    2014-11-01

    The purposes of this study were to (a) assess the prevalence of articles with honorary authors and ghost authors in 10 leading peer-reviewed nursing journals between 2010 to 2012; (b) compare the results to prevalence reported by authors of articles published in high-impact medical journals; and (c) assess the experiences of editors in the International Academy of Nursing Editors with honorary and guest authorship. Corresponding authors of articles published in 10 nursing journals between 2010 and 2012 were invited to complete an online survey about the contributions of coauthors to see if the International Committee of Medical Journal Editors () criteria for authorship were met. Additionally, members of the International Academy of Nursing Editors were invited to complete an online survey about their experiences in identifying honorary or ghost authors in articles submitted for publication. The prevalence of articles published in 10 nursing journals with honorary authors was 42%, and the prevalence of ghost authorship was 27.6%. This is a greater prevalence than what has been reported among medical journals. Qualitative data yielded five themes: lack of awareness around the rules for authorship; acknowledged need for debate, discussion, and promotion of ethical practice; knowingly tolerating, and sometimes deliberately promoting, transgressions in practice; power relations and expectations; and avoiding scrutiny. Among the 60 respondents to the editor survey, 22 (36.7%) reported identifying honorary authors and 13 (21.7%) reported ghost authors among papers submitted to their publications. Inappropriate authorship is a significant problem among scholarly nursing publications. If nursing scholarship is to maintain integrity and be considered trustworthy, and if publications are to be a factor in professional advancement, editors, nursing leaders, and faculty need to disseminate and adhere to ethical authorship practices. © 2014 Sigma Theta Tau International.

  15. Large-scale analysis of Arabidopsis transcription reveals a basal co-regulation network

    Directory of Open Access Journals (Sweden)

    Chamovitz Daniel A

    2009-09-01

    Full Text Available Abstract Background Analyses of gene expression data from microarray experiments has become a central tool for identifying co-regulated, functional gene modules. A crucial aspect of such analysis is the integration of data from different experiments and different laboratories. How to weigh the contribution of different experiments is an important point influencing the final outcomes. We have developed a novel method for this integration, and applied it to genome-wide data from multiple Arabidopsis microarray experiments performed under a variety of experimental conditions. The goal of this study is to identify functional globally co-regulated gene modules in the Arabidopsis genome. Results Following the analysis of 21,000 Arabidopsis genes in 43 datasets and about 2 × 108 gene pairs, we identified a globally co-expressed gene network. We found clusters of globally co-expressed Arabidopsis genes that are enriched for known Gene Ontology annotations. Two types of modules were identified in the regulatory network that differed in their sensitivity to the node-scoring parameter; we further showed these two pertain to general and specialized modules. Some of these modules were further investigated using the Genevestigator compendium of microarray experiments. Analyses of smaller subsets of data lead to the identification of condition-specific modules. Conclusion Our method for identification of gene clusters allows the integration of diverse microarray experiments from many sources. The analysis reveals that part of the Arabidopsis transcriptome is globally co-expressed, and can be further divided into known as well as novel functional gene modules. Our methodology is general enough to apply to any set of microarray experiments, using any scoring function.

  16. Exploring Vietnamese co-authorship patterns in social sciences with basic network measures of 2008-2017 Scopus data.

    Science.gov (United States)

    Ho, Tung Manh; Nguyen, Ha Viet; Vuong, Thu-Trang; Dam, Quang-Minh; Pham, Hiep-Hung; Vuong, Quan-Hoang

    2017-01-01

    Background: Collaboration is a common occurrence among Vietnamese scientists; however, insights into Vietnamese scientific collaborations have been scarce. On the other hand, the application of social network analysis in studying science collaboration has gained much attention all over the world. The technique could be employed to explore Vietnam's scientific community. Methods: This paper employs network theory to explore characteristics of a network of 412 Vietnamese social scientists whose papers can be found indexed in the Scopus database. Two basic network measures, density and clustering coefficient, were taken, and the entire network was studied in comparison with two of its largest components. Results: The networks connections are very sparse, with a density of only 0.47%, while the clustering coefficient is very high (58.64%). This suggests an inefficient dissemination of information, knowledge, and expertise in the network. Secondly, the disparity in levels of connection among individuals indicates that the network would easily fall apart if a few highly-connected nodes are removed. Finally, the two largest components of the network were found to differ from the entire networks in terms of measures and were both led by the most productive and well-connected researchers. Conclusions: High clustering and low density seems to be tied to inefficient dissemination of expertise among Vietnamese social scientists, and consequently low scientific output. Also low in robustness, the network shows the potential of an intellectual elite composed of well-connected, productive, and socially significant individuals.

  17. Aplicación de técnicas de análisis de redes sociales y de co-ocurrencia de palabras en la determinación de frentes de investigación

    Science.gov (United States)

    Boeris, C. E.

    A bibliometric study of the scientific production of the IAR researchers has been performed, with the aim of determining the institute's research fronts and groups of researchers working on these fronts. Methods of analysis of co-occurrence of words, authorship analysis and social network analysis (SNA) has been applied by extracting keywords and the names of the authors on the base of published works. The results support the existence of two research fronts within the institution. FULL TEXT IN SPANISH

  18. Network analysis of named entity co-occurrences in written texts

    Science.gov (United States)

    Amancio, Diego Raphael

    2016-06-01

    The use of methods borrowed from statistics and physics to analyze written texts has allowed the discovery of unprecedent patterns of human behavior and cognition by establishing links between models features and language structure. While current models have been useful to unveil patterns via analysis of syntactical and semantical networks, only a few works have probed the relevance of investigating the structure arising from the relationship between relevant entities such as characters, locations and organizations. In this study, we represent entities appearing in the same context as a co-occurrence network, where links are established according to a null model based on random, shuffled texts. Computational simulations performed in novels revealed that the proposed model displays interesting topological features, such as the small world feature, characterized by high values of clustering coefficient. The effectiveness of our model was verified in a practical pattern recognition task in real networks. When compared with traditional word adjacency networks, our model displayed optimized results in identifying unknown references in texts. Because the proposed representation plays a complementary role in characterizing unstructured documents via topological analysis of named entities, we believe that it could be useful to improve the characterization of written texts (and related systems), specially if combined with traditional approaches based on statistical and deeper paradigms.

  19. Weighted Evolving Networks with Self-organized Communities

    International Nuclear Information System (INIS)

    Xie Zhou; Wang Xiaofan; Li Xiang

    2008-01-01

    In order to describe the self-organization of communities in the evolution of weighted networks, we propose a new evolving model for weighted community-structured networks with the preferential mechanisms functioned in different levels according to community sizes and node strengths, respectively. Theoretical analyses and numerical simulations show that our model captures power-law distributions of community sizes, node strengths, and link weights, with tunable exponents of ν ≥ 1, γ > 2, and α > 2, respectively, sharing large clustering coefficients and scaling clustering spectra, and covering the range from disassortative networks to assortative networks. Finally, we apply our new model to the scientific co-authorship networks with both their weighted and unweighted datasets to verify its effectiveness

  20. A ten-year comparison of women authorship in U.S. dermatology literature, 1999 vs. 2009

    Directory of Open Access Journals (Sweden)

    Shali Zhang, MD

    2016-03-01

    Full Text Available Women are entering medicine at increasing rates, particularly in dermatology. In this study, we compared women’s influence and status in academic dermatology with that of men by examining authorship roles in peer-reviewed dermatology literature. We examined the literature in 2009 and compared that to 10 years prior (1999. A total of 1399 articles were reviewed, 594 of which met study criteria and were included in statistical analysis. There was a marked increase in senior female authorship over a decade (22% vs. 38%, p < 0.001. Female first authorship increased as well (41% vs. 51%, p < 0.001. In contrast, changes in male senior and first authorship were not statistically significant. Federal funding for female senior authors increased over a decade (19% vs. 37%, p = 0.05, and female senior authors in the 2009 cohort were more likely to hold a dual MD/PhD degree (0% vs. 11%, p = 0.04 or pure PhD degree (11% vs. 27%, p = 0.04. Women are approaching parity with men in terms of authorship in the dermatology literature, and additional research training and attainment of federal funding have helped women publish as senior authors.

  1. A ten-year comparison of women authorship in U.S. dermatology literature, 1999 vs. 2009

    Directory of Open Access Journals (Sweden)

    Shali Zhang, MD

    2017-03-01

    Full Text Available Women are entering medicine at increasing rates, particularly in dermatology. In this study, we compared women’s influence and status in academic dermatology with that of men by examining authorship roles in peer-reviewed dermatology literature. We examined the literature in 2009 and compared that to 10 years prior (1999. A total of 1399 articles were reviewed, 594 of which met study criteria and were included in statistical analysis. There was a marked increase in senior female authorship over a decade (22% vs. 38%, p < 0.001. Female first authorship increased as well (41% vs. 51%, p < 0.001. In contrast, changes in male senior and first authorship were not statistically significant. Federal funding for female senior authors increased over a decade (19% vs. 37%, p = 0.05, and female senior authors in the 2009 cohort were more likely to hold a dual MD/PhD degree (0% vs. 11%, p = 0.04 or pure PhD degree (11% vs. 27%, p = 0.04. Women are approaching parity with men in terms of authorship in the dermatology literature, and additional research training and attainment of federal funding have helped women publish as senior authors.

  2. Authorship trends in the Journal of Orthopaedic Research: A bibliometric analysis.

    Science.gov (United States)

    Seetharam, Abhijit; Ali, Mohammed T; Wang, Christine Y; Schultz, Katherine E; Fischer, James P; Lunsford, Shatoria; Whipple, Elizabeth C; Loder, Randall T; Kacena, Melissa A

    2018-05-18

    Publications are an important tool to measure one's success and achievement in academia. They can help propel a career forward and move one into a position of leadership. The overall purpose of this study was to investigate changes in bibliometric variables, authorship, and collaboration trends in the Journal of Orthopaedic Research (JOR®), since its inception in 1983. A bibliometric analysis was completed for all manuscripts meeting the inclusion criteria (638), which were published throughout the inaugural year plus one representative year of each decade. Several parameters were investigated including numbers of manuscripts, authors, collaborating institutions/countries, references, pages, and citations; region of origin and gender of authors over time and by region were main focuses. Significant increases over time were observed in all bibliometric variables analyzed except in the number of pages and citations. There was an approximate 27% point increase for both female first and corresponding authors from 1983 to 2015. While this is most likely due to the increase in the number of women that have entered the field over time, similar increases in the percentage of women holding positions on the JOR editorial board or in leadership positions within in the field may have also contributed to improvements in gender parity. Understanding changes in publishing characteristics over time, by region, and by gender are critical, especially with the rising demands of publishing in academia. JOR has seen increase in most variables analyzed, including improvements in authorship by women in the field of orthopaedic research. © 2018 Orthopaedic Research Society. Published by Wiley Periodicals, Inc. J Orthop Res. © 2018 Orthopaedic Research Society. Published by Wiley Periodicals, Inc.

  3. Database Documentary: From Authorship to Authoring in Remediated/Remixed Documentary

    Directory of Open Access Journals (Sweden)

    Hart Cohen

    2012-06-01

    Full Text Available The engagement with documentary from its inception as a film form is frequently a set of references to documentary auteurs. The names of Flaherty, Grierson, Vertov and later Ivens, Leacock and Rouch are immediate signifiers of whole documentary film practices. These practices have given rise to histories and criticism that have dominated discussion of documentary and provided the foundation for more nuanced thinking about problems of the genre. One of the seminal texts in the field, Documentary by Erik Barnouw (1974 celebrates the auteur as the structuring principle for his historical review of documentary. It may be a reflection of the influence of this book, that so much of documentary criticism reflects the auteur approach as a starting point for analysis. The shift towards a new documentary format, the Database Documentary, challenges the concept of an auteur in its presentation of documentary materials. This format relies on a remediation technique that recalibrates documentary media within new distributive networks supported by the web and enhanced by converged and designed visual and sonic interfaces. The reception modalities are necessarily removed from the familiar forms of projection and presentation of documentary film and television. The research focus for this paper is how the concept of authorship (the “auteur” is transformed by the emergence of the relatively new screen format of the database documentary. The paper reviews some of the more recent examples of Database Documentary, the contexts for their production and the literature on new conceptions of documentary knowledge that may be drawn from these examples. An analysis of the authoring program, Korsakow and the documentaries that have been made using its software will demonstrate the route documentary has travelled from authorship to authoring in contemporary media production.

  4. Gendered Authorship and Demographic Research : An Analysis of 50 Years of Demography

    NARCIS (Netherlands)

    Krapf, Sandra; Kreyenfeld, Michaela; Wolf, Katharina

    2016-01-01

    Demography, the official journal of the Population Association of America, has been given the highest rating among demographic journals by the Social Sciences Citation Index (SSCI). Our aim here is to investigate the development of research subfields and female authorship in Demography over the last

  5. Writing a research paper at the university: authorship vs plagiarism

    Directory of Open Access Journals (Sweden)

    Maria Fátima Alves

    2016-09-01

    Full Text Available Considering the need of producing academic texts at the university, many undergraduate students do it by copying texts that were already published. In this study we discuss the presence of plagiarism versus authorship marks in the introduction of academic articles produced by freshmen in a licenciateship degree. Therefore, we emphasize the issue of plagiarism and authorship, particularly from the perspective of the enunciative bakhtinian studies and then present the theoretical basis of Literacies, with the most recent studies on Literacies and Socio-Rhetorics. Data analysis revealed and confirmed the academic writing as a complex activity, given the practice of plagiarism found in the analyzed productions. The lack of knowledge of academic writing together not the theme domain contributed to the practice of plagiarism.

  6. Psychometric Evaluation of the Student Authorship Questionnaire: A Confirmatory Factor Analysis Approach

    Science.gov (United States)

    Ballantine, Joan; Guo, Xin; Larres, Patricia

    2015-01-01

    This research provides new insights into the measurement of students' authorial identity and its potential for minimising the incidence of unintentional plagiarism by providing evidence about the psychometric properties of the Student Authorship Questionnaire (SAQ). Exploratory and confirmatory factor analyses (EFA and CFA) are employed to…

  7. Pore network quantification of sandstones under experimental CO2 injection using image analysis

    Science.gov (United States)

    Berrezueta, Edgar; González-Menéndez, Luís; Ordóñez-Casado, Berta; Olaya, Peter

    2015-04-01

    Automated-image identification and quantification of minerals, pores and textures together with petrographic analysis can be applied to improve pore system characterization in sedimentary rocks. Our case study is focused on the application of these techniques to study the evolution of rock pore network subjected to super critical CO2-injection. We have proposed a Digital Image Analysis (DIA) protocol that guarantees measurement reproducibility and reliability. This can be summarized in the following stages: (i) detailed description of mineralogy and texture (before and after CO2-injection) by optical and scanning electron microscopy (SEM) techniques using thin sections; (ii) adjustment and calibration of DIA tools; (iii) data acquisition protocol based on image capture with different polarization conditions (synchronized movement of polarizers); (iv) study and quantification by DIA that allow (a) identification and isolation of pixels that belong to the same category: minerals vs. pores in each sample and (b) measurement of changes in pore network, after the samples have been exposed to new conditions (in our case: SC-CO2-injection). Finally, interpretation of the petrography and the measured data by an automated approach were done. In our applied study, the DIA results highlight the changes observed by SEM and microscopic techniques, which consisted in a porosity increase when CO2 treatment occurs. Other additional changes were minor: variations in the roughness and roundness of pore edges, and pore aspect ratio, shown in the bigger pore population. Additionally, statistic tests of pore parameters measured were applied to verify that the differences observed between samples before and after CO2-injection were significant.

  8. Meta-analysis of inter-species liver co-expression networks elucidates traits associated with common human diseases.

    Directory of Open Access Journals (Sweden)

    Kai Wang

    2009-12-01

    Full Text Available Co-expression networks are routinely used to study human diseases like obesity and diabetes. Systematic comparison of these networks between species has the potential to elucidate common mechanisms that are conserved between human and rodent species, as well as those that are species-specific characterizing evolutionary plasticity. We developed a semi-parametric meta-analysis approach for combining gene-gene co-expression relationships across expression profile datasets from multiple species. The simulation results showed that the semi-parametric method is robust against noise. When applied to human, mouse, and rat liver co-expression networks, our method out-performed existing methods in identifying gene pairs with coherent biological functions. We identified a network conserved across species that highlighted cell-cell signaling, cell-adhesion and sterol biosynthesis as main biological processes represented in genome-wide association study candidate gene sets for blood lipid levels. We further developed a heterogeneity statistic to test for network differences among multiple datasets, and demonstrated that genes with species-specific interactions tend to be under positive selection throughout evolution. Finally, we identified a human-specific sub-network regulated by RXRG, which has been validated to play a different role in hyperlipidemia and Type 2 diabetes between human and mouse. Taken together, our approach represents a novel step forward in integrating gene co-expression networks from multiple large scale datasets to leverage not only common information but also differences that are dataset-specific.

  9. The literary science as de-facement. Problem of double authorship in Tadeusz Rachwał and Tadeusz Sławek's texts

    Directory of Open Access Journals (Sweden)

    Piotr Bogalecki

    2007-11-01

    Full Text Available The essay is an attempt of rethinking a mode of authorship in literary science discourse of Tadeusz Rachwał and Tadeusz Sławek. Their texts is being compared with G. Deleuze and F. Guattari's method of collective writing and interpreted according to theories of J. Derrida, P. de Man and M. Foucault. Rachwał and Sławek's strategy of double authorship (which is not the same as traditional co-authorship underlines the impossibility of recognition who is speaking in the text; therefore their collective books may be understood as a kind of performing theses which they contain (e.g. connected with poststructuralist "death of author" or a poet and God's mystical co-writing. Furthermore, double authorship leaves its marks on structure of text. We can see a lot of techniques which make Rachwał and Sławek's texts more complicated, e.g. fragmentary style of writing, using different types of typography and even creating an elements of visual poetry. These experiments and a new way of these texts' being in academic public sphere make them rather ethical than scientific - the ethic qualities and poetic function seem to be more important than the science typical cognitive functions. Because of unceasing underlining a linguistic aspect, the texts of Rachwał and Sławek may be read as examples of rhetorical type of ethic criticism. Not only do they ask about a significance of primary ethical ideas like friendship, community or responsibility, but also about an existence of category of author in literary studies after linguistic turn.

  10. Trends in the Authorship of Peer Reviewed Publications in the Urology Literature.

    Science.gov (United States)

    An, Julie Y; Baiocco, Joseph A; Rais-Bahrami, Soroush

    2018-05-01

    We evaluated the authorship count of all original research and review articles published in prominent Urology journals to trend patterns in authorship over the last decade. Secondarily, we evaluated bibliometric assessments and sought to understand whether authorship count was associated with citation rate and each article's field-normalized measure of impact. Information on authorship count, date of publication, study type, journal of publication, citation rate, and relative citation ratio (RCR) was collected for all original research and review articles published in European Urology, Journal of Urology, Urology , and British Journal of Urology International between 2006 and 2016. We examined trends in authorship count over the past decade, as well as between journals and article types. 21,336 articles were analyzed, of which 19,527 (91.5%) were original research and 1,809 (8.5%) were review articles. Overall, number of authors increased 46.1% from 2006 to 2016. Authorship counts in original research articles increased by an average of 2.45 per manuscript (43.3% increase) over the decade analyzed. More dramatically, authorship counts in review articles increased by an average of 3.14 per manuscript (92.6% increase). Articles with higher authorship counts were associated with more citations and greater RCR (r=0.13, p<0.001). There is a global trend towards more authors per article in urology publications-in both original research publications and review articles, and across each of the individual journals evaluated. An increase in author count has also been associated with increased citations and measures of article impact.

  11. Authorship in Radiation Oncology: Proliferation Trends Over 30 Years

    Energy Technology Data Exchange (ETDEWEB)

    Ojerholm, Eric, E-mail: eric.ojerholm@uphs.upenn.edu; Swisher-McClure, Samuel

    2015-11-15

    Purpose: To investigate authorship trends in the radiation oncology literature. Methods and Materials: We examined the authorship credits of “original research articles” within 2 popular radiation oncology journals–International Journal of Radiation Oncology, Biology, Physics and Radiotherapy and Oncology–in 1984, 1994, 2004, and 2014. We compared the number of authors per publication during these 4 time periods using simple linear regression as a test for trend. We investigated additional author characteristics in a subset of articles. Results: A total of 2005 articles were eligible. The mean number of authors per publication rose from 4.3 in 1984 to 9.1 in 2014 (P<.001). On subset analysis of 400 articles, there was an increase in the percentage of multidisciplinary bylines (from 52% to 72%), multi-institutional bylines (from 20% to 53%), and publications with a trainee first author (from 16% to 56%) during the study period. Conclusions: The mean number of authors per publication has more than doubled over the last 30 years in the radiation oncology literature. Possible explanations include increasingly complex and collaborative research as well as honorary authorship. Explicit documentation of author contributions could help ensure that scientific work is credited according to accepted standards.

  12. Ethical Questions Regarding Joint Authorship: Business and Nonbusiness Faculty Perceptions on Noncontributing Authorship.

    Science.gov (United States)

    Hamilton, J. Brooke, III; And Others

    1997-01-01

    Survey responses from 36 of 61 business faculty and 53 of 139 nonbusiness faculty found that both groups considered it unethical to give noncontributors authorship credit. However, business faculty reported the practice to be more prevalent and considered their colleagues more likely to do it. (SK)

  13. Some Dynamics of Authorship.

    Science.gov (United States)

    Dunkin, Mick

    1992-01-01

    A study of the relationship between faculty publishing and career advancement at the University of Sydney (Australia) controlled for both gender and discipline. Results revealed some previously unseen dynamics of authorship, bringing into question common assumptions about solo vs. multiple authors and order of author names. Some discipline-related…

  14. Honorary Authorship Practices in Environmental Science Teams: Structural and Cultural Factors and Solutions.

    Science.gov (United States)

    Elliott, Kevin C; Settles, Isis H; Montgomery, Georgina M; Brassel, Sheila T; Cheruvelil, Kendra Spence; Soranno, Patricia A

    2017-01-01

    Overinclusive authorship practices such as honorary or guest authorship have been widely reported, and they appear to be exacerbated by the rise of large interdisciplinary collaborations that make authorship decisions particularly complex. Although many studies have reported on the frequency of honorary authorship and potential solutions to it, few have probed how the underlying dynamics of large interdisciplinary teams contribute to the problem. This article reports on a qualitative study of the authorship standards and practices of six National Science Foundation-funded interdisciplinary environmental science teams. Using interviews of the lead principal investigator and an early-career member on each team, our study explores the nature of honorary authorship practices as well as some of the motivating factors that may contribute to these practices. These factors include both structural elements (policies and procedures) and cultural elements (values and norms) that cross organizational boundaries. Therefore, we provide recommendations that address the intersection of these factors and that can be applied at multiple organizational levels.

  15. Exploring Co-studied Massive Open Online Course Subjects via Social Network Analysis

    Directory of Open Access Journals (Sweden)

    Katy Jordan

    2014-06-01

    Full Text Available Massive Open Online Courses (MOOCs allow students to study online courses without requiring previous experience or qualifications. This offers students the freedom to study a wide variety of topics, freed from the curriculum of a degree programme for example; however, it also poses a challenge for students in terms of making connections between individual courses. This paper examines the subjects which students at one MOOC platform (Coursera choose to study. It uses a social network analysis based approach to create a network graph of co-studied subjects. The resulting network demonstrates a good deal of overlap between different disciplinary areas. Communities are identified within the graph and characterised. The results suggests that MOOC students may not be seeking to replicate degree-style courses in one specialist area, which may have implications for the future moves toward ‘MOOCs for credit’.

  16. Information categorization approach to literary authorship disputes

    Science.gov (United States)

    Yang, Albert C.-C.; Peng, C.-K.; Yien, H.-W.; Goldberger, Ary L.

    2003-11-01

    Scientific analysis of the linguistic styles of different authors has generated considerable interest. We present a generic approach to measuring the similarity of two symbolic sequences that requires minimal background knowledge about a given human language. Our analysis is based on word rank order-frequency statistics and phylogenetic tree construction. We demonstrate the applicability of this method to historic authorship questions related to the classic Chinese novel “The Dream of the Red Chamber,” to the plays of William Shakespeare, and to the Federalist papers. This method may also provide a simple approach to other large databases based on their information content.

  17. Age, Cohort and Co-Authorship

    OpenAIRE

    Hamermesh, Daniel S.

    2015-01-01

    The previously documented trend toward more co- and multi-authored research in economics is partly (perhaps 20 percent) due to different research styles of scholars in different birth cohorts (of different ages). Most of the trend reflects profession-wide changes in research style. Older scholars show greater variation in their research styles than younger ones, who use similar numbers of co-authors in each published paper; but there are no differences across cohorts in scholars’ willingness ...

  18. Writing a research paper at the university: authorship vs plagiarism

    Directory of Open Access Journals (Sweden)

    Maria Fátima Alves

    2016-09-01

    Full Text Available http://dx.doi.org/10.5007/2175-8026.2016v69n3p77 Considering the need of producing academic texts at the university, many undergraduate students do it by copying texts that were already published. In this study we discuss the presence of plagiarism versus authorship marks in the introduction of academic articles produced by freshmen in a licenciateship degree. Therefore, we emphasize the issue of plagiarism and authorship, particularly from the perspective of the enunciative bakhtinian studies and then present the theoretical basis of Literacies, with the most recent studies on Literacies and Socio-Rhetorics. Data analysis revealed and confirmed the academic writing as a complex activity, given the practice of plagiarism found in the analyzed productions. The lack of knowledge of academic writing together not the theme domain contributed to the practice of plagiarism.

  19. Understanding Context: Cultural, Relational, & Psychological Interactions in Self-Authorship Development

    Science.gov (United States)

    Pizzolato, Jane Elizabeth; Nguyen, Tu-Lien Kim; Johnston, Marc P.; Wang, Sherry

    2012-01-01

    Existing research points toward dissonance as the primary catalyst in self-authorship development. This study investigated the cultural relevance of current conceptions of dissonance's role in self-authorship development. A total of 166 participants of color were recruited from three large public research universities from different regions in the…

  20. A Co-Citation Network of Young Children's Learning with Technology

    Science.gov (United States)

    Tang, Kai-Yu; Li, Ming-Chaun; Hsin, Ching-Ting; Tsai, Chin-Chung

    2016-01-01

    This paper used a novel literature review approach--co-citation network analysis--to illuminate the latent structure of 87 empirical papers in the field of young children's learning with technology (YCLT). Based on the document co-citation analysis, a total of 206 co-citation relationships among the 87 papers were identified and then graphically…

  1. In vitro co-cultures of human gut bacterial species as predicted from co-occurrence network analysis

    DEFF Research Database (Denmark)

    Das, Promi; Ji, Boyang; Kovatcheva-Datchary, Petia

    2018-01-01

    Network analysis of large metagenomic datasets generated by current sequencing technologies can reveal significant co-occurrence patterns between microbial species of a biological community. These patterns can be analyzed in terms of pairwise combinations between all species comprising a community...... thetaiotaomicron, as well as Faecalibacterium prausnitzii and Roseburia inulinivorans as model organisms for our study. We then delineate the outcome of the co-cultures when equal distributions of resources were provided. The growth behavior of the co-culture was found to be dependent on the types of microbial...... species present, their specific metabolic activities, and resulting changes in the culture environment. Through this reductionist approach and using novel in vitro combinations of microbial species under anaerobic conditions, the results of this work will aid in the understanding and design of synthetic...

  2. Views on authorship: survey among academic staffs of the Korean radiologists

    International Nuclear Information System (INIS)

    Hwang, Seong Su

    2004-01-01

    The purpose of my survey is to assess the knowledge and views of the academic staff on authorship criteria. 363 academic staff were invited to fill out the survey via e-mail and the responses were collected for two weeks. A one-page questionnaire was prepared and it included 19 questions with three major groups. The first group of questions was demographic information including the responder's age, sex and academic position. The second group of questions was focused on the individual perception and personal experience for authorship on their publications. The last group of questions included awareness and views of authorship criteria established by International Committee of Medical Journal Editors (ICMJE). The responders were grouped according to age, sex and grade. To examine the difference of responses among each group, a Chi square test for categorical variables was performed. The overall response rate to the survey was 39.2% (113/288) and 20.7% (75/363) of e-mail address were undeliverable. The grade of respondents is relatively evenly distributed from fellowship (20%) to professor (22%). Most of the respondents (90.6%) had experienced difficulties with authorship. Although 72.2% of respondents had no awareness of ICMJE's criteria, they agreed with criteria fully (56.1%) and partially (42.4%). 42% of respondents expected that more than 50% of the authors per paper didn't fulfill the authorship criteria. Less than 5 authors per paper were adequate (96%). Most of respondents thought that the introduction of a contribution listing to the Journal of the Korean radiological society is necessary (93.5%) but it is not urgently needed (59.0%). I can see that there are authorship problems among the academic members of Korean radiological society. It is necessary to educate the members and to have them justify the validity of their authorship claims

  3. The Gender of Authorship: Heiner Müller and Christa Wolf

    Directory of Open Access Journals (Sweden)

    Helen Fehervary

    1980-09-01

    Full Text Available The relationship between sexuality and politics has always been an underlying assumption of the avant-garde. In recent East German avant-garde literature, the notion of authorship as production has become associated with technological rationality and the patriarchal socialist state. The ensuing crisis of the traditional male author has thus led necessarily to a radicalization of subjectivity and to the politics of gender. A comparison of two contemporary texts, one by a female author, one by a male, shows that the crisis of authorship assumes two distinctly different forms when differences in gender are taken into account. The East German authors Heiner Müller and Christa Wolf have exhibited remarkably similar literary and political developments. Two of their most recent texts, Mülller's Hamletmachine and Wolf's No Place. Nowhere , both address the problematic of traditional male authorship and the disintegration of a preconceived literary gender identity. Yet, these two texts exemplify very different assumptions about the relationship between authorship and the literary tradition. Müller's text suggests the imprisonment of the male author within a petrified system of tradition and images, and hence the necessity of deconstruction. Wolf's text manifests a process of creating a new form of female-identified authorship and the possibility of redefining the tradition of literature and its future.

  4. Authorship in Croatian copyright legislation from 1846 to 2007

    OpenAIRE

    Velagić, Zoran; Hocenski, Ines

    2015-01-01

    The aim of this paper is to investigate and present concepts of the author and his/her copyright work in copyright legislation that entered into force in Croatia from 1846 to 2007. 17 legal documents (acts, corrigenda, amendments) were investigated using the content analysis method. The analysis of the results gives an insight into various cultural and sociological dimensions of authorship in the given time-frame. Special attention was paid to definitions of the author and his/her copyright w...

  5. Bibliometric analysis of authorship trends and collaboration dynamics over the past three decades of BONE's publication history.

    Science.gov (United States)

    Khan, Faisal; Sandelski, Morgan M; Rytlewski, Jeffrey D; Lamb, Jennifer; Pedro, Christina; Adjei, Michael B N; Lunsford, Shatoria; Fischer, James P; Wininger, Austin E; Whipple, Elizabeth C; Loder, Randall T; Kacena, Melissa A

    2018-02-01

    The existence of a gender gap in academia has been a hotly debated topic over the past several decades. It has been argued that due to the gender gap, it is more difficult for women to obtain higher positions. Manuscripts serve as an important measurement of one's accomplishments within a particular field of academia. Here, we analyzed, over the past 3 decades, authorship and other trends in manuscripts published in BONE, one of the premier journals in the field of bone and mineral metabolism. For this study, one complete year of manuscripts was evaluated (e.g. 1985, 1995, 2005, 2015) for each decade. A bibliometric analysis was then performed of authorship trends for those manuscripts. Analyzed fields included: average number of authors per manuscript, numerical position of the corresponding author, number of institutions collaborating on each manuscript, number of countries involved with each manuscript, number of references, and number of citations per manuscript. Each of these fields increased significantly over the 30-year time frame (pgender of both the first and corresponding authors was identified and analyzed over time and by region. There was a significant increase in the percentage of female first authors from 23.4% in 1985 to 47.8% in 2015 (p=0.001). The percentage of female corresponding authors also increased from 21.2% in 1985 to 35.4% in 2015 although it was not significant (p=0.07). With such a substantial emphasis being placed on publishing in academic medicine, it is crucial to comprehend the changes in publishing characteristics over time and geographical region. These findings highlight authorship trends in BONE over time as well as by region. Importantly, these findings also highlight where challenges still exist. Copyright © 2017 Elsevier Inc. All rights reserved.

  6. Comparing absolute and normalized indicators in scientific collaboration: a study in Environmental Science in Latin America

    Energy Technology Data Exchange (ETDEWEB)

    Cabrini-Grácio, M.C.; Oliveira, E.F.T.

    2016-07-01

    This paper aims to conduct a comparative analysis of scientific collaboration proximity trends generated from absolute indicators and indicators of collaboration intensity in the field of Environmental Sciences in Latin America (LA), in order to identify possible existing biases in the absolute indicators of international cooperation, due to the magnitude of scientific production of these countries in mainstream science. More specifically, the objective is to analyze the compared forms of absolute and normalized values of co-authorship among Latin America countries and their main collaborators, in order to observe similarities and differences expressed by two indexes of frequency in relation to scientific collaboration trends in LA countries. In addition, we aim to visualize and analyze scientific collaboration networks with absolute and normalized indexes of co-authorship through SC among Latin America countries and their collaborators, comparing proximity evidenced by two generated collaborative networks - absolute and relative indicators. Data collection comprised a period of 10 years (2006-2015) for the countries from LA: Brazil, Mexico, Argentina, Chile and Colombia as they produced 94% of total production, a percentage considered representative and significant for this study. Then, we verified the co-authorship frequencies among the five countries and their key collaborators and builted the matrix with the indexes of co-authorship normalized through SC. Then, we generated two egocentric networks of scientific collaboration - absolute frequencies and normalized frequencies through SC using Pajek software. From the results, we observed the need for absolute and normalized indicators to describe the scientific collaboration phenomenon in a more thoroughly way, once these indicators provide complementary information. (Author)

  7. Honorary and ghost authorship in high impact biomedical journals: a cross sectional survey.

    Science.gov (United States)

    Wislar, Joseph S; Flanagin, Annette; Fontanarosa, Phil B; Deangelis, Catherine D

    2011-10-25

    To assess the prevalence of honorary and ghost authors in six leading general medical journals in 2008 and compare this with the prevalence reported by authors of articles published in 1996. Cross sectional survey using a web based questionnaire. International survey of journal authors. Sample of corresponding authors of 896 research articles, review articles, and editorial/opinion articles published in six general medical journals with high impact factors in 2008: Annals of Internal Medicine, JAMA, Lancet, Nature Medicine, New England Journal of Medicine, and PLoS Medicine. Self reported compliance with International Committee of Medical Journal Editors (ICMJE) criteria for authorship for all authors on the selected articles. A total of 630/896 (70.3%) corresponding authors responded to the survey. The prevalence of articles with honorary authorship or ghost authorship, or both, was 21.0% (95% CI 18.0% to 24.3%), a decrease from 29.2% reported in 1996 (P = 0.004). Based on 545 responses on honorary authorship, 96 articles (17.6% (95% CI 14.6% to 21.0%)) had honorary authors (range by journal 12.2% to 29.3%), a non-significant change from 1996 (19.3%; P = 0.439). Based on 622 responses on ghost authorship, 49 articles (7.9% (6.0% to 10.3%)) had ghost authors (range by journal 2.1% to 11.0%), a significant decline from 1996 (11.5%; P = 0.023). The prevalence of honorary authorship was 25.0% in original research reports, 15.0% in reviews, and 11.2% in editorials, whereas the prevalence of ghost authorship was 11.9% in research articles, 6.0% in reviews, and 5.3% in editorials. Evidence of honorary and ghost authorship in 21% of articles published in major medical journals in 2008 suggests that increased efforts by scientific journals, individual authors, and academic institutions are essential to promote responsibility, accountability, and transparency in authorship, and to maintain integrity in scientific publication.

  8. Integrating Genetic and Gene Co-expression Analysis Identifies Gene Networks Involved in Alcohol and Stress Responses.

    Science.gov (United States)

    Luo, Jie; Xu, Pei; Cao, Peijian; Wan, Hongjian; Lv, Xiaonan; Xu, Shengchun; Wang, Gangjun; Cook, Melloni N; Jones, Byron C; Lu, Lu; Wang, Xusheng

    2018-01-01

    Although the link between stress and alcohol is well recognized, the underlying mechanisms of how they interplay at the molecular level remain unclear. The purpose of this study is to identify molecular networks underlying the effects of alcohol and stress responses, as well as their interaction on anxiety behaviors in the hippocampus of mice using a systems genetics approach. Here, we applied a gene co-expression network approach to transcriptomes of 41 BXD mouse strains under four conditions: stress, alcohol, stress-induced alcohol and control. The co-expression analysis identified 14 modules and characterized four expression patterns across the four conditions. The four expression patterns include up-regulation in no restraint stress and given an ethanol injection (NOE) but restoration in restraint stress followed by an ethanol injection (RSE; pattern 1), down-regulation in NOE but rescue in RSE (pattern 2), up-regulation in both restraint stress followed by a saline injection (RSS) and NOE, and further amplification in RSE (pattern 3), and up-regulation in RSS but reduction in both NOE and RSE (pattern 4). We further identified four functional subnetworks by superimposing protein-protein interactions (PPIs) to the 14 co-expression modules, including γ-aminobutyric acid receptor (GABA) signaling, glutamate signaling, neuropeptide signaling, cAMP-dependent signaling. We further performed module specificity analysis to identify modules that are specific to stress, alcohol, or stress-induced alcohol responses. Finally, we conducted causality analysis to link genetic variation to these identified modules, and anxiety behaviors after stress and alcohol treatments. This study underscores the importance of integrative analysis and offers new insights into the molecular networks underlying stress and alcohol responses.

  9. Integrating Genetic and Gene Co-expression Analysis Identifies Gene Networks Involved in Alcohol and Stress Responses

    Directory of Open Access Journals (Sweden)

    Jie Luo

    2018-04-01

    Full Text Available Although the link between stress and alcohol is well recognized, the underlying mechanisms of how they interplay at the molecular level remain unclear. The purpose of this study is to identify molecular networks underlying the effects of alcohol and stress responses, as well as their interaction on anxiety behaviors in the hippocampus of mice using a systems genetics approach. Here, we applied a gene co-expression network approach to transcriptomes of 41 BXD mouse strains under four conditions: stress, alcohol, stress-induced alcohol and control. The co-expression analysis identified 14 modules and characterized four expression patterns across the four conditions. The four expression patterns include up-regulation in no restraint stress and given an ethanol injection (NOE but restoration in restraint stress followed by an ethanol injection (RSE; pattern 1, down-regulation in NOE but rescue in RSE (pattern 2, up-regulation in both restraint stress followed by a saline injection (RSS and NOE, and further amplification in RSE (pattern 3, and up-regulation in RSS but reduction in both NOE and RSE (pattern 4. We further identified four functional subnetworks by superimposing protein-protein interactions (PPIs to the 14 co-expression modules, including γ-aminobutyric acid receptor (GABA signaling, glutamate signaling, neuropeptide signaling, cAMP-dependent signaling. We further performed module specificity analysis to identify modules that are specific to stress, alcohol, or stress-induced alcohol responses. Finally, we conducted causality analysis to link genetic variation to these identified modules, and anxiety behaviors after stress and alcohol treatments. This study underscores the importance of integrative analysis and offers new insights into the molecular networks underlying stress and alcohol responses.

  10. The Intellectual Structure of Research on Educational Technology in Science Education (ETiSE): A Co-citation Network Analysis of Publications in Selected Journals (2008-2013)

    Science.gov (United States)

    Tang, Kai-Yu; Tsai, Chin-Chung

    2016-01-01

    The main purpose of this paper is to investigate the intellectual structure of the research on educational technology in science education (ETiSE) within the most recent years (2008-2013). Based on the criteria for educational technology research and the citation threshold for educational co-citation analysis, a total of 137 relevant ETiSE papers were identified from the International Journal of Science Education, the Journal of Research in Science Teaching, Science Education, and the Journal of Science Education and Technology. Then, a series of methodologies were performed to analyze all 137 source documents, including document co-citation analysis, social network analysis, and exploratory factor analysis. As a result, 454 co-citation ties were obtained and then graphically visualized with an undirected network, presenting a global structure of the current ETiSE research network. In addition, four major underlying intellectual subfields within the main component of the ETiSE network were extracted and named as: (1) technology-enhanced science inquiry, (2) simulation and visualization for understanding, (3) technology-enhanced chemistry learning, and (4) game-based science learning. The most influential co-citation pairs and cross-boundary phenomena were then analyzed and visualized in a co-citation network. This is the very first attempt to illuminate the core ideas underlying ETiSE research by integrating the co-citation method, factor analysis, and the networking visualization technique. The findings of this study provide a platform for scholarly discussion of the dissemination and research trends within the current ETiSE literature.

  11. Facilitating value co-creation in networks

    DEFF Research Database (Denmark)

    Rasmussen, Mette Apollo

    participants in varied ways come to grasp the meaning of networking. The dissertation draws on insights from the Service-Dominant (S-D) Logic to explain how networks can be seen as spheres for value co-creation. Co-creation as a theoretical construct has evolved from varied streams of service marketing...... of networking. The concept of “imaginative value” (Beckert, 2011) is used to explain the oscillating behaviors observed in the two networks. Imaginative value can be defined as symbolic value that actors ascribe to an object, in this case the network. I argue that the group practices in the networks led......The dissertation investigates through two ethnographic case studies how value co-creation takes place in inter-organizational networks that have been facilitated by a municipality. The contribution of the study to business network research is the emphasis on development phases of networks...

  12. Elucidating gene function and function evolution through comparison of co-expression networks in plants

    Directory of Open Access Journals (Sweden)

    Marek eMutwil

    2014-08-01

    Full Text Available The analysis of gene expression data has shown that transcriptionally coordinated (co-expressed genes are often functionally related, enabling scientists to use expression data in gene function prediction. This Focused Review discusses our original paper (Large-scale co-expression approach to dissect secondary cell wall formation across plant species, Frontiers in Plant Science 2:23. In this paper we applied cross-species analysis to co-expression networks of genes involved in cellulose biosynthesis. We show that the co-expression networks from different species are highly similar, indicating that whole biological pathways are conserved across species. This finding has two important implications. First, the analysis can transfer gene function annotation from well-studied plants, such as Arabidopsis, to other, uncharacterized plant species. As the analysis finds genes that have similar sequence and similar expression pattern across different organisms, functionally equivalent genes can be identified. Second, since co-expression analyses are often noisy, a comparative analysis should have higher performance, as parts of co-expression networks that are conserved are more likely to be functionally relevant. In this Focused Review, we outline the comparative analysis done in the original paper and comment on the recent advances and approaches that allow comparative analyses of co-function networks. We hypothesize that, in comparison to simple co-expression analysis, comparative analysis would yield more accurate gene function predictions. Finally, by combining comparative analysis with genomic information of green plants, we propose a possible composition of cellulose biosynthesis machinery during earlier stages of plant evolution.

  13. Culture and Unmerited Authorship Credit: Who Wants It and Why?

    Science.gov (United States)

    Ren, Xiaopeng; Su, Hong; Lu, Kewen; Dong, Xiawei; Ouyang, Zhengzheng; Talhelm, Thomas

    2016-01-01

    Unmerited authorship is a practice common to many countries around the world, but are there systematic cultural differences in the practice? We tested whether scientists from collectivistic countries are more likely to add unmerited coauthors than scientists from individualistic countries. We analyzed archival data from top scientific journals (Study 1) and found that national collectivism predicted the number of authors, which might suggest more unmerited authors. Next, we found that collectivistic scientists were more likely to add unmerited coauthors than individualistic scientists, both between cultures (Studies 2-3) and within cultures (Study 4). Finally, we found that priming people with collectivistic self-construal primes made them more likely to endorse questionable authorship attitudes (Study 5). These findings show that culture collectivism is related to unmerited authorship.

  14. The Ethics of Multiple Authorship: Power, Performativity and the Gift Economy

    Science.gov (United States)

    Macfarlane, Bruce

    2017-01-01

    The allocation of authorship credit in academic publication raises complex ethical issues but is comparatively under-researched, particularly in the social sciences. The paper analyses the results of research into attitudes to multiple authorship based on a survey questionnaire of academics working in education faculties in universities in Hong…

  15. 機器人文獻之合著網絡及熱門主題分析 Analysis of the Co-authorship Network and Hot Topics in the Robotics Literature

    Directory of Open Access Journals (Sweden)

    Ya-Chu Hsu

    2011-09-01

    Full Text Available 本研究主要探討機器人文獻之合著情況及高被引文獻之熱門研究主題,以科學引文索引擴充版(SCIE)資料庫中14種機器人學核心期刊文獻為研究資料來源,樣本資料共計9,571篇研究論文,分布於1983-2009年間。研究分析結果顯示,機器人學每年研究論文篇數由96篇成長至746篇,整體之合著率為82.71%,以2至4位作者為最主要的合著型態。在國家層次方面,整體跨國合著率為11.98%,美國是跨國合著篇數最高且最具資源控制能力之國家,但其跨國合著率(22.79%)不及瑞士跨國合著率(48.51%)。在機構層次方面,整體跨機構合著率為29.24%,美國卡內基美隆大學是跨機構合著篇數最高之機構,然而,日本國際電氣通信基礎技術研究所的跨機構合著率達85.71%,高於美國任一機構。另外,美國麻省理工學院為最具有資源控制能力之機構。高被引文獻之關鍵字分析結果呈現六大研究主題,包括無固定路線之機器人、智慧型機器人、視覺機器人、固定路線或固定點之移動機器人、時域機器人、夾爪機器人。The purpose of this study is to explore the co-authorship and the hot topic from the most highly cited articles of robots literature. The research targets are 14 journals of robotics from the Science Citation Index Expanded (SCIE database. A total of 9,571 articles were collected from 1983 to 2009. The conclusions are as follows. The total number of articles from robots literature increased gradually from 96 to 746 each year. The percentage of co-authored articles was 83% and the most frequent numbers of authors per article ranged from 2 to 4. At the national level, the multinational collaboration accounted for 12% of the co-authored articles. The U.S. owned the largest number of multinational collaboration articles and had the highest value of the three chief kinds of centrality

  16. [Credit problems on scientific article authorships: some solutions].

    Science.gov (United States)

    Casas-Martínez, María de la Luz

    2008-01-01

    Unfortunately, since the amount of publications has become a parameter for qualifying the scientific production, abuses and even frauds can take place easily. Along with the rising of new investigation projects in which numerous scientists participate, the multi-authorship has also taken place into the scientific scene, with articles having been damaged, modified or altered purposely with erroneous information and plagiarism, against the true author's will. The unconformities among the research team members reflect on a tense and stressful work atmosphere that interferes with investigation process itself; therefore, it is necessary to give and apply more transparency to these activities. The present article will analyze the recommendations from the International Committee of Medical Journal Editors on authorships for medical articles. Here it is pointed out, when an authorship should be considered as one or not, also offering possible solutions to avoid this problem, such as, the elaboration of an author's consent letters written previously to the publication of the article, the elaboration of credits and the limitation of qualified publications regarding each activity reason.

  17. [AUTHORSHIP - A GREAT HONOR OR AN ONEROUS RESPONSIBILITY?

    Science.gov (United States)

    Shemer, Asaf; Shoenfeld, Yehuda

    2017-06-01

    Over the years ethical issues have been raised regarding authorship of scientific literature. Research is mainly accomplished through teamwork, and publishing articles has a significant impact upon academic promotion and career path. Thus, concepts such as honorary authors, ghost authors, and equally contributing authors have been established. In order to maintain better regulation, authorship recommendation and policies have been developed such as the International Committee of Medical Journal Editors (ICMJE) guidelines. The senior researcher plays an important role in the process of publishing an article. While they may be eager to announce their findings, the senior researcher must first ensure that no falsification, fabrication or plagiarism has been committed, as well as address the sensitive subject of the correct order of authors on the paper. The senior researcher, along with the rest of the authors appearing on the paper, must also be accountable for the data reported in the article. In this editorial, we will review the topic of authorship and explore famous international incidents as well as our own experiences.

  18. Authorship Trends in Spine Publications from 2000 to 2015.

    Science.gov (United States)

    Haws, Brittany E; Khechen, Benjamin; Movassaghi, Kamran; Yom, Kelly H; Guntin, Jordan A; Cardinal, Kaitlyn L; Shoshana, Noah B; Singh, Kern

    2018-02-06

    Literature review. To examine changes in authorship characteristics for Spine publications from the year 2000-2015. Scientific publications are considered an indication of academic achievement for physicians. Recently, authorship trends have been investigated, however, limited information is available on this topic within spine-specific literature. Original research articles published in Spine in the years 2000, 2005, 2010, and 2015 were evaluated. Authorship characteristics were collected for each article, including the number of authors and institutions per publication, first and last author gender, publication origin, and highest degree held by the first and last author. Trends over time were analyzed using numeric and visual descriptive analyses including percentages, means, standard deviations, and graphs. An average of 506 articles per year were published in Spine during the years 2000, 2005, 2010, and 2015. The number of articles written by ≥ 10 authors increased during this time (0.9% to 14.4%). There was a substantial increase in the number of multiple institutional affiliations (33.6% to 68.7%) and articles originating from outside North America (47.6% to 55.7%) from 2000 to 2015. The percentage of first authors with bachelor's degrees was higher in 2015 (6.6%) as compared to 2000 (1.4%), and more last authors were identified as MD/PhDs in 2015 (19.2%) than in 2000 (10.0%). Similar female representation was noted for first and last authorship for all years evaluated. The results of this study demonstrate increases in authors per article published in Spine from 2000 to 2015. Additionally, first authors were more likely to hold bachelor's degrees over time. This may be attributed to increasing competition in spine-related fields, necessitating earlier research exposure to aid in academic achievement. Interestingly, the percentage of female authorship has not changed significantly over time, in contrast with much of the previous literature. 2.

  19. Authorship Policies for the Conduct of Graduate Research in Puerto Rico

    Science.gov (United States)

    Mulero-Portela, Ana L.; Colon-Santaella, Carmen L.; Bonet-Rivera, Ivette

    2011-01-01

    Authorship credit is one of the areas addressed by research integrity. Policies established by graduate academic programs and academic institutions in Puerto Rico are analyzed by describing authorship principles included. Twenty-six percent of the policies specify that students are authors of their research work. Four percent of the policies…

  20. Fragments of peer review: A quantitative analysis of the literature (1969-2015)

    Science.gov (United States)

    Grimaldo, Francisco; Marušić, Ana

    2018-01-01

    This paper examines research on peer review between 1969 and 2015 by looking at records indexed from the Scopus database. Although it is often argued that peer review has been poorly investigated, we found that the number of publications in this field doubled from 2005. A half of this work was indexed as research articles, a third as editorial notes and literature reviews and the rest were book chapters or letters. We identified the most prolific and influential scholars, the most cited publications and the most important journals in the field. Co-authorship network analysis showed that research on peer review is fragmented, with the largest group of co-authors including only 2.1% of the whole community. Co-citation network analysis indicated a fragmented structure also in terms of knowledge. This shows that despite its central role in research, peer review has been examined only through small-scale research projects. Our findings would suggest that there is need to encourage collaboration and knowledge sharing across different research communities. PMID:29466467

  1. Authorships of habitual bodies dancing

    DEFF Research Database (Denmark)

    Ravn, Susanne

    Dance is a mandatory part of physical education in Denmark and in this context imitation and improvisation are often used as if they are to be understood as dichotomies. In this paper I focus on analyzing how the students’ experience of the authorships of their dance-movements – whether improvise...

  2. Authors, authorship order, the moving finger writes

    Directory of Open Access Journals (Sweden)

    Jayakumar Avula

    2015-01-01

    Full Text Available There has been a phenomenal increase in the number of research papers with multiple authors. Increasing academic pressures and halo around individuals with prolific publications have made many aspirants to claim authorship. Increasing number of authors has brought its own issues of author credits, disputes, rivalry, and a degree of unwelcome scramble for credit sharing. Many unresolved issues about authorship and various guidelines and admonitions are more often infringed than adhered to. The position of the first and last author seem to be well recognized in medical and dental journals, but the fate of middle authors is left to guessing and often of inconsequential importance. Most of these issues, as well as fraud, misconduct in medical research publications, have been discussed amply but too of no avail. It is comforting to know that except for small shouts and whispers, dental research has been relatively free from scams and frauds. The complacency, however, needs to be tempered with constant vigil against fraud, falsification and fabrication of research reports. Honest authorship, vigilant editors, robust peer review, and a discerning readership are the sine qua non for a good research paper. Academic institutions and selection committees should be concentrating on the quality of research papers and not enamored of their number.

  3. Analysis of co-authorship patterns at the individual level

    Directory of Open Access Journals (Sweden)

    Wolfgang Glänzel

    Full Text Available Publication activity, citation impact and communication patterns, in general, change in the course of a scientist's career. Mobility and radical changes in a scientist's research environment or profile are among the most spectacular factors that have effect on individual collaboration patterns. Although bibliometrics at this level should be applied with the utmost care, characteristic patterns of an individual scientist's research collaboration and changes in these in the course of a career can be well depicted using bibliometric methods. A wide variety of indicators and network tools are chosen to follow up the evolution and to visualise and to quantify collaboration and performance profiles of individual researchers. These methods are, however, designed to supplement expert-opinion based assessment and other qualitative assessments, and should not be used as stand-alone evaluation tools. This study presents part of the results published in an earlier study by Zhang and Glänzel (20124 as well as new applications of these methods.

  4. Culture and Unmerited Authorship Credit: Who Wants It and Why?

    Science.gov (United States)

    Ren, Xiaopeng; Su, Hong; Lu, Kewen; Dong, Xiawei; Ouyang, Zhengzheng; Talhelm, Thomas

    2016-01-01

    Unmerited authorship is a practice common to many countries around the world, but are there systematic cultural differences in the practice? We tested whether scientists from collectivistic countries are more likely to add unmerited coauthors than scientists from individualistic countries. We analyzed archival data from top scientific journals (Study 1) and found that national collectivism predicted the number of authors, which might suggest more unmerited authors. Next, we found that collectivistic scientists were more likely to add unmerited coauthors than individualistic scientists, both between cultures (Studies 2–3) and within cultures (Study 4). Finally, we found that priming people with collectivistic self-construal primes made them more likely to endorse questionable authorship attitudes (Study 5). These findings show that culture collectivism is related to unmerited authorship. PMID:28082940

  5. The Authorship of a Musical Work and the Position of a Music Arranger (Avtorstvo glasbenega dela in položaj glasbenega aranžerja

    Directory of Open Access Journals (Sweden)

    Matija Damjan

    2015-11-01

    Full Text Available The creation of the final form of a piece of popular music usually involves several people: the composer, the lyricist, the music arranger, performers, sound engineers, etc. The article explores under what conditions the contributions of these persons constitute co-authorship of a piece of music and discusses in which phase a musical work can be considered finished. The copyright status of a music arranger is discussed in particular, whose work is usually defined in theory as adaptation of existing musical works, whereas in the practice of Slovenian popular music, arrangers often act as co-authors of new original music. The last part of the article examines the rules on the duration of rights in musical works produced in co-authorship and discusses in what way the ownership and the duration of copyrights in musical works is affected by Directive 2011/77/EU, which sets out unified rules on the duration of rights in musical compositions with words.

  6. Authorship Analysis on Dark Marketplace Forums

    NARCIS (Netherlands)

    Spitters, M.; Klaver, F.; Koot, G.; Staalduinen, M.V.

    2015-01-01

    Anonymity networks like Tor harbor many underground markets and discussion forums dedicated to the trade of illegal goods and services. As they are gaining in popularity, the analysis of their content and users is becoming increasingly urgent for many different parties, ranging from law enforcement

  7. Intriguing Trends in Nuclear Physics Articles Authorship

    Energy Technology Data Exchange (ETDEWEB)

    Pritychenko, B. [Brookhaven National Lab. (BNL), Upton, NY (United States). NNDC

    2014-11-06

    A look at how authorship of physics publications (particularly nuclear publications) have changed throughout the decades by comparing data mined from the National Nuclear Data Center (NNDC) with observations.

  8. Composers on Stage: Ambiguous Authorship in Contemporary Music Performance

    DEFF Research Database (Denmark)

    Groth, Sanne Krogh

    2016-01-01

    In recent years, workflows within the field of contemporary classical music have changed drastically. Increasingly, composers are active in the process of creating and co-creating performances, not only the auditory dimensions but also the visual design and theatrical staging. The practice has...... but involving themselves in other ways. The article explores the ambivalent authorship at stake in these performances, arguing that they appear to be projects that reveal the processes of musical performance in ways that undermine the Romantic idea of the composer while concurrently celebrating that very same...... idea through their exposition and staging of the composer. The examples used to illustrate my argument are analyses of All the Time (Hodkinson, 2001), Buenos Aires (Steen-Andersen 2014) and Ord for Ord (Rønsholdt, 2014)...

  9. Using egocentric analysis to investigate professional networks and productivity of graduate students and faculty in life sciences in Japan, Singapore, and Taiwan.

    Science.gov (United States)

    Hara, Noriko; Chen, Hui; Ynalvez, Marcus Antonius

    2017-01-01

    Prior studies showed that scientists' professional networks contribute to research productivity, but little work has examined what factors predict the formation of professional networks. This study sought to 1) examine what factors predict the formation of international ties between faculty and graduate students and 2) identify how these international ties would affect publication productivity in three East Asian countries. Face-to-face surveys and in-depth semi-structured interviews were conducted with a sample of faculty and doctoral students in life sciences at 10 research institutions in Japan, Singapore, and Taiwan. Our final sample consisted of 290 respondents (84 faculty and 206 doctoral students) and 1,435 network members. We used egocentric social network analysis to examine the structure of international ties and how they relate to research productivity. Our findings suggest that overseas graduate training can be a key factor in graduate students' development of international ties in these countries. Those with a higher proportion of international ties in their professional networks were likely to have published more papers and written more manuscripts. For faculty, international ties did not affect the number of manuscripts written or of papers published, but did correlate with an increase in publishing in top journals. The networks we examined were identified by asking study participants with whom they discuss their research. Because the relationships may not appear in explicit co-authorship networks, these networks were not officially recorded elsewhere. This study sheds light on the relationships of these invisible support networks to researcher productivity.

  10. Using egocentric analysis to investigate professional networks and productivity of graduate students and faculty in life sciences in Japan, Singapore, and Taiwan.

    Directory of Open Access Journals (Sweden)

    Noriko Hara

    Full Text Available Prior studies showed that scientists' professional networks contribute to research productivity, but little work has examined what factors predict the formation of professional networks. This study sought to 1 examine what factors predict the formation of international ties between faculty and graduate students and 2 identify how these international ties would affect publication productivity in three East Asian countries. Face-to-face surveys and in-depth semi-structured interviews were conducted with a sample of faculty and doctoral students in life sciences at 10 research institutions in Japan, Singapore, and Taiwan. Our final sample consisted of 290 respondents (84 faculty and 206 doctoral students and 1,435 network members. We used egocentric social network analysis to examine the structure of international ties and how they relate to research productivity. Our findings suggest that overseas graduate training can be a key factor in graduate students' development of international ties in these countries. Those with a higher proportion of international ties in their professional networks were likely to have published more papers and written more manuscripts. For faculty, international ties did not affect the number of manuscripts written or of papers published, but did correlate with an increase in publishing in top journals. The networks we examined were identified by asking study participants with whom they discuss their research. Because the relationships may not appear in explicit co-authorship networks, these networks were not officially recorded elsewhere. This study sheds light on the relationships of these invisible support networks to researcher productivity.

  11. Analysis of the dynamic co-expression network of heart regeneration in the zebrafish

    Science.gov (United States)

    Rodius, Sophie; Androsova, Ganna; Götz, Lou; Liechti, Robin; Crespo, Isaac; Merz, Susanne; Nazarov, Petr V.; de Klein, Niek; Jeanty, Céline; González-Rosa, Juan M.; Muller, Arnaud; Bernardin, Francois; Niclou, Simone P.; Vallar, Laurent; Mercader, Nadia; Ibberson, Mark; Xenarios, Ioannis; Azuaje, Francisco

    2016-05-01

    The zebrafish has the capacity to regenerate its heart after severe injury. While the function of a few genes during this process has been studied, we are far from fully understanding how genes interact to coordinate heart regeneration. To enable systematic insights into this phenomenon, we generated and integrated a dynamic co-expression network of heart regeneration in the zebrafish and linked systems-level properties to the underlying molecular events. Across multiple post-injury time points, the network displays topological attributes of biological relevance. We show that regeneration steps are mediated by modules of transcriptionally coordinated genes, and by genes acting as network hubs. We also established direct associations between hubs and validated drivers of heart regeneration with murine and human orthologs. The resulting models and interactive analysis tools are available at http://infused.vital-it.ch. Using a worked example, we demonstrate the usefulness of this unique open resource for hypothesis generation and in silico screening for genes involved in heart regeneration.

  12. Characterization of WRKY co-regulatory networks in rice and Arabidopsis

    Directory of Open Access Journals (Sweden)

    Kikuchi Shoshi

    2009-09-01

    Full Text Available Abstract Background The WRKY transcription factor gene family has a very ancient origin and has undergone extensive duplications in the plant kingdom. Several studies have pointed out their involvement in a range of biological processes, revealing that a large number of WRKY genes are transcriptionally regulated under conditions of biotic and/or abiotic stress. To investigate the existence of WRKY co-regulatory networks in plants, a whole gene family WRKYs expression study was carried out in rice (Oryza sativa. This analysis was extended to Arabidopsis thaliana taking advantage of an extensive repository of gene expression data. Results The presented results suggested that 24 members of the rice WRKY gene family (22% of the total were differentially-regulated in response to at least one of the stress conditions tested. We defined the existence of nine OsWRKY gene clusters comprising both phylogenetically related and unrelated genes that were significantly co-expressed, suggesting that specific sets of WRKY genes might act in co-regulatory networks. This hypothesis was tested by Pearson Correlation Coefficient analysis of the Arabidopsis WRKY gene family in a large set of Affymetrix microarray experiments. AtWRKYs were found to belong to two main co-regulatory networks (COR-A, COR-B and two smaller ones (COR-C and COR-D, all including genes belonging to distinct phylogenetic groups. The COR-A network contained several AtWRKY genes known to be involved mostly in response to pathogens, whose physical and/or genetic interaction was experimentally proven. We also showed that specific co-regulatory networks were conserved between the two model species by identifying Arabidopsis orthologs of the co-expressed OsWRKY genes. Conclusion In this work we identified sets of co-expressed WRKY genes in both rice and Arabidopsis that are functionally likely to cooperate in the same signal transduction pathways. We propose that, making use of data from co

  13. Social networks and online environments: when science and practice co-evolve

    OpenAIRE

    Rosen, Devan; Barnett, George A.; Kim, Jang Hyun

    2011-01-01

    The science of social network analysis has co-evolved with the development of online environments and computer-mediated communication. Unique and precise data available from computer and information systems have allowed network scientists to explore novel social phenomena and develop new methods. Additionally, advances in the structural analysis and visualization of computer-mediated social networks have informed developers and shaped the design of social media tools. This article reviews som...

  14. Identifying key genes in rheumatoid arthritis by weighted gene co-expression network analysis.

    Science.gov (United States)

    Ma, Chunhui; Lv, Qi; Teng, Songsong; Yu, Yinxian; Niu, Kerun; Yi, Chengqin

    2017-08-01

    This study aimed to identify rheumatoid arthritis (RA) related genes based on microarray data using the WGCNA (weighted gene co-expression network analysis) method. Two gene expression profile datasets GSE55235 (10 RA samples and 10 healthy controls) and GSE77298 (16 RA samples and seven healthy controls) were downloaded from Gene Expression Omnibus database. Characteristic genes were identified using metaDE package. WGCNA was used to find disease-related networks based on gene expression correlation coefficients, and module significance was defined as the average gene significance of all genes used to assess the correlation between the module and RA status. Genes in the disease-related gene co-expression network were subject to functional annotation and pathway enrichment analysis using Database for Annotation Visualization and Integrated Discovery. Characteristic genes were also mapped to the Connectivity Map to screen small molecules. A total of 599 characteristic genes were identified. For each dataset, characteristic genes in the green, red and turquoise modules were most closely associated with RA, with gene numbers of 54, 43 and 79, respectively. These genes were enriched in totally enriched in 17 Gene Ontology terms, mainly related to immune response (CD97, FYB, CXCL1, IKBKE, CCR1, etc.), inflammatory response (CD97, CXCL1, C3AR1, CCR1, LYZ, etc.) and homeostasis (C3AR1, CCR1, PLN, CCL19, PPT1, etc.). Two small-molecule drugs sanguinarine and papaverine were predicted to have a therapeutic effect against RA. Genes related to immune response, inflammatory response and homeostasis presumably have critical roles in RA pathogenesis. Sanguinarine and papaverine have a potential therapeutic effect against RA. © 2017 Asia Pacific League of Associations for Rheumatology and John Wiley & Sons Australia, Ltd.

  15. Investigation of Strategic Changes Using Patent Co-Inventor Network Analysis: The Case of Samsung Electronics

    Directory of Open Access Journals (Sweden)

    Sungchul Choi

    2016-12-01

    Full Text Available The aim of this paper is to propose a method to investigate a firm’s strategic changes. Technologies or technological capabilities are a major resource for achieving competitive advantages, so a firm’s R&D effort to improve capabilities on specific technologies is aligned with strategic direction. Therefore, this research analyzes changes in R&D efforts by identifying key R&D personnel using patent co-inventor network and social network analysis. Based on characteristics of application and granted patents, the method analyzes current and future R&D efforts and so identifies strategic changes of a firm. We conducted an empirical analysis using the patents of Samsung Electronics. Our method analyzed the current and future strategies of Samsung Electronics and the result shows clear strategic changes in their focal technologies and business.

  16. [Interagency collaboration in Spanish scientific production in nursing: social network analysis].

    Science.gov (United States)

    Almero-Canet, Amparo; López-Ferrer, Mayte; Sales-Orts, Rafael

    2013-01-01

    The objectives of this paper are to analyze the Spanish scientific production in nursing, define its temporal evolution, its geographical and institutional distribution, and observe the interinstitutional collaboration. We analyze a comprehensive sample of Spanish scientific production in the nursing area extracted from the multidisciplinary database SciVerse Scopus. The nursing scientific production grows along time. The collaboration rate is 3.7 authors per paper and 61% of the authors only publish one paper. Barcelona and Madrid are the provinces with highest number of authors. Most belong to the hospitalary environment, followed closely by authors belonging to the university. The most institutions that collaborate, sharing authorship of articles are: University of Barcelona, Autonomous University of Barcelona and Clinic Hospital of Barcelona. The nursing scientific production has been increasing since her incorporation at the university. The collaboration rate found is higher than found for other papers. It shows a low decrease of occasional authors. It discusses the outlook of scientific collaboration in nursing in Spain, at the level of institutions by co-authorship of papers, through a network graph. It observes their distribution, importance and interactions or lack thereof. There is a strong need to use international databases for research, care and teaching, in addition to the national specialized information resources. Professionals are encouraged to normalization of the paper's signature, both, surnames and institutions to which they belong. It confirms the limited cooperation with foreign institutions, although there is an increasing trend of collaboration between Spanish authors in this discipline. It is observed, clearly defined three interinstitutional collaboration patterns. Copyright © 2012 Elsevier España, S.L. All rights reserved.

  17. Reconstructing Faculty Roles to Align with Self- Authorship Development: The Gentle Art of Stepping Back

    Directory of Open Access Journals (Sweden)

    Deborah A. Day

    2014-11-01

    Full Text Available Student development has connections to important academic purposes in higher education (King, Baxter Magolda, Barber, Kendall Brown & Lindsay, 2009. In particular, a growing body of work on self-authorship, a social-constructive theory of development, has demonstrated relevance to the purposes of higher education (Baxter Magolda, 2001; King & Baxter Magolda, 2004. The conditions which support self-authorship development in academic settings have been studied in detail, drawing attention to what King et al. (2009 frame as developmentally effective educational experiences. Explorations of self-authorship development in academic settings have focused on students’ experiences and outcomes. The classroom experiences of faculty, particularly those working outside institutional initiatives, to support self-authorship have received less attention. This study used a theory-driven (Baxter Magolda, 2001; Pizzolato, 2005, practice-based research framework, to explore a faculty-student affairs collaboration through participant observation as the collaborators sought to align their teaching practices with the tenets of self-authorship development in the context of a senior undergraduate course in Service-Learning. Four themes emerged, which have relevance for those who wish to consider student personal and academic development concurrently. We argue that individual faculty members can collaborate with student affairs professionals and use self-authorship theory to expand their constructions of what it means to be a “good professor” by approaching teaching as a mirror image of the self-authorship journey traveled by students.

  18. Authorship, Gender, and Institutional Affiliation in Library History: The Case of "Libraries & Culture."

    Science.gov (United States)

    Herubel, Jean-Pierre V. M.

    1991-01-01

    Describes a study that examined two characteristics of authorship--the gender of the authors and their institutional affiliation--to see who is producing published research in the field of library history. The results of an analysis of articles, technical notes, and reviews from 23 years of "Library and Culture" are discussed. (two…

  19. Trends in authorship based on gender and nationality in published neuroscience literature.

    Science.gov (United States)

    Dubey, Divyanshu; Sawhney, Anshudha; Atluru, Aparna; Amritphale, Amod; Dubey, Archana; Trivedi, Jaya

    2016-01-01

    To evaluate the disparity in authorship based on gender and nationality of institutional affiliation among journals from developed and developing countries. Original articles from two neuroscience journals, with a 5 year impact factor >15 (Neuron and Nature Neuroscience) and from two neurology journals from a developing country (Neurology India and Annals of Indian Academy of Neurology) were categorized by gender and institutional affiliation of first and senior authors. Articles were further divided by the type of research (basic/translational/clinical), study/target population (adult/pediatrics/both) and field of neurology. Data was collected for the years 2002 and 2012. There are large disparities in authorship by women and from developing countries in high impact factor neuroscience journals. However, there was a non-statistical rise in female first and senior authorship over a 10 year period. Additionally there was a significant increase in first authorship from institutions based in developing countries in the two neuroscience journals examined (P < 0.05). In the two neurology journals based in India there was a significant increase in the number of articles published by international investigators between 2002 and 2012 (P < 0.05). Over the last decade, there has been a non-statistical increase in proportion of female first and senior authors, and a significant increase in authors from developing countries in high impact factor neuroscience journals. However they continue to constitute a minority. The disparity in authorship based on gender also exists in neurology journals based in a developing country (India).

  20. Authorship and Moral Rights in Video Games

    Directory of Open Access Journals (Sweden)

    Julian Stein

    2015-10-01

    Full Text Available The complex and multimedia nature of video games results in several original and derivative works of copyright contained in a single game. Although there is no need to establish a new category of work and the current state of law offers comprehensive protection of the works, it also means there can be many different authors in a single production, so assignment of rights can be difficult.This interrelation of works and their respective authors can also have a negative effect on authors' moral rights, or, more specifically, the right to claim authorship and the right to object to derogatory treatment of the work.This article analyses the current law of the United Kingdom with regard to authorship and ownership of copyright in video games and underlying works before analysing and evaluating the moral rights of video games' contributors.

  1. [The gender gap in highest quality medical research - A scientometric analysis of the representation of female authors in highest impact medical journals].

    Science.gov (United States)

    Bendels, Michael H K; Wanke, Eileen M; Benik, Steffen; Schehadat, Marc S; Schöffel, Norman; Bauer, Jan; Gerber, Alexander; Brüggmann, Dörthe; Oremek, Gerhard M; Groneberg, David A

    2018-05-01

     The study aims to elucidate the state of gender equality in high-impact medical research, analyzing the representation of female authorships from January, 2008 to September, 2017.  133 893 male and female authorships from seven high-impact medical journals were analyzed. The key methodology was the combined analysis of the relative frequency, odds ratio and citations of female authorships. The Prestige Index measures the distribution of prestigious authorships between the two genders.  35.0 % of all authorships and 34.3 % of the first, 36.1 % of the co- and 24.2 % of the last authorships were held by women. Female authors have an odds ratio of 0.97 (KI: 0.93 - 1.01) for first, 1.36 (KI: 1.32 - 1.40) for co- und 0.57 (KI: 0.54 - 0.60) for last authorships compared to male authors. The proportion of female authorships exhibits an annual growth of 1.3 % overall, with 0.5 % for first, 1.2 % for co-, and 0.8 % for last authorships. Women are underrepresented at prestigious authorship compared to men (Prestige Index = -0.38). The underrepresentation accentuates in highly competitive articles attracting the highest citation rates, namely, articles with many authors and articles that were published in highest-impact journals. Multi-author articles with male key authors are more frequently cited than articles with female key authors. The gender-specific differences in citation rates increase the more authors contribute to an article. Women publish fewer articles compared to men (39.6 % female authors are responsible for 35.0 % of the authorships) and are underrepresented at productivity levels of more than 1 article per author. Distinct differences at the country level were revealed.  High impact medical research is characterized by few female group leaders as last authors and many female researchers being first or co-authors early in their career. It is very likely that this gender-specific career dichotomy will persistent in

  2. Using species co-occurrence networks to assess the impacts of climate change

    DEFF Research Database (Denmark)

    Bastos Araujo, Miguel; Rozenfeld, Alejandro; Rahbek, Carsten

    2011-01-01

    Viable populations of species occur in a given place if three conditions are met: the environment at the place is suitable; the species is able to colonize it; co-occurrence is possible despite or because of interactions with other species. Studies investigating the effects of climate change...... on species have mainly focused on measuring changes in climate suitability. Complex interactions among species have rarely been explored in such studies. We extend network theory to the analysis of complex patterns of co-occurrence among species. The framework is used to explore the robustness of networks...... under climate change. With our data, we show that networks describing the geographic pattern of co-occurrence among species display properties shared by other complex networks, namely that most species are poorly connected to other species in the network and only a few are highly connected. In our...

  3. The analysis of transient noise of PCB P/G network based on PI/SI co-simulation

    Science.gov (United States)

    Haohang, Su

    2018-02-01

    With the frequency of the space camera become higher than before, the power noise of the imaging electronic system become the important factor. Much more power noise would disturb the transmissions signal, and even influence the image sharpness and system noise. "Target impedance method" is one of the traditional design method of P/G network (power and ground network), which is shorted of transient power noise analysis and often made "over design". In this paper, a new design method of P/G network is provided which simulated by PI/SI co-simulation. The transient power noise can be simulated and then applied in the design of noise reduction, thus effectively controlling the change of the noise in the P/G network. The method can efficiently control the number of adding decoupling capacitor, and is very efficient and feasible to keep the power integrity.

  4. "My Library Was Dukedom Large Enough": Academic Libraries Mediating the Shakespeare Authorship Debate

    Directory of Open Access Journals (Sweden)

    Michael Quinn Dudley

    2013-11-01

    Full Text Available The "Shakespeare Authorship Question" regarding the identity of the poet-playwright has been debated for over 150 years. Now, with the growing list of signatories to the "Declaration of Reasonable Doubt", the creation of a Master's Degree program in Authorship Studies at Brunel University in London, the opening of the Shakespeare Authorship Research Studies Center at the Library of Concordia University in Portland, and the release of two competing high profile books both entitled Shakespeare Beyond Doubt, academic libraries are being presented with a unique and timely opportunity to participate in and encourage this debate, which has long been considered a taboo subject in the academy.

  5. Exploring Vietnamese co-authorship patterns in social sciences with basic network measures of 2008-2017 Scopus data [version 1; referees: 2 approved

    Directory of Open Access Journals (Sweden)

    Tung Manh Ho

    2017-08-01

    Full Text Available Background: Collaboration is a common occurrence among Vietnamese scientists; however, insights into Vietnamese scientific collaborations have been scarce. On the other hand, the application of social network analysis in studying science collaboration has gained much attention all over the world. The technique could be employed to explore Vietnam’s scientific community. Methods: This paper employs network theory to explore characteristics of a network of 412 Vietnamese social scientists whose papers can be found indexed in the Scopus database. Two basic network measures, density and clustering coefficient, were taken, and the entire network was studied in comparison with two of its largest components. Results: The networks connections are very sparse, with a density of only 0.47%, while the clustering coefficient is very high (58.64%. This suggests an inefficient dissemination of information, knowledge, and expertise in the network. Secondly, the disparity in levels of connection among individuals indicates that the network would easily fall apart if a few highly-connected nodes are removed. Finally, the two largest components of the network were found to differ from the entire networks in terms of measures and were both led by the most productive and well-connected researchers. Conclusions: High clustering and low density seems to be tied to inefficient dissemination of expertise among Vietnamese social scientists, and consequently low scientific output. Also low in robustness, the network shows the potential of an intellectual elite composed of well-connected, productive, and socially significant individuals.

  6. A CoAP-Based Network Access Authentication Service for Low-Power Wide Area Networks: LO-CoAP-EAP

    Directory of Open Access Journals (Sweden)

    Dan Garcia-Carrillo

    2017-11-01

    Full Text Available The Internet-of-Things (IoT landscape is expanding with new radio technologies. In addition to the Low-Rate Wireless Personal Area Network (LR-WPAN, the recent set of technologies conforming the so-called Low-Power Wide Area Networks (LP-WAN offers long-range communications, allowing one to send small pieces of information at a reduced energy cost, which promotes the creation of new IoT applications and services. However, LP-WAN technologies pose new challenges since they have strong limitations in the available bandwidth. In general, a first step prior to a smart object being able to gain access to the network is the process of network access authentication. It involves authentication, authorization and key management operations. This process is of vital importance for operators to control network resources. However, proposals for managing network access authentication in LP-WAN are tailored to the specifics of each technology, which could introduce interoperability problems in the future. In this sense, little effort has been put so far into providing a wireless-independent solution for network access authentication in the area of LP-WAN. To fill this gap, we propose a service named Low-Overhead CoAP-EAP (LO-CoAP-EAP, which is based on previous work designed for LR-WPAN. LO-CoAP-EAP integrates the use of Authentication, Authorization and Accounting (AAA infrastructures and the Extensible Authentication Protocol (EAP protocol. For this integration, we use the Constrained Application Protocol (CoAP to design a network authentication service independent of the type of LP-WAN technology. LO-CoAP-EAP represents a trade-off between flexibility, wireless technology independence, scalability and performance in LP-WAN.

  7. A CoAP-Based Network Access Authentication Service for Low-Power Wide Area Networks: LO-CoAP-EAP.

    Science.gov (United States)

    Garcia-Carrillo, Dan; Marin-Lopez, Rafael; Kandasamy, Arunprabhu; Pelov, Alexander

    2017-11-17

    The Internet-of-Things (IoT) landscape is expanding with new radio technologies. In addition to the Low-Rate Wireless Personal Area Network (LR-WPAN), the recent set of technologies conforming the so-called Low-Power Wide Area Networks (LP-WAN) offers long-range communications, allowing one to send small pieces of information at a reduced energy cost, which promotes the creation of new IoT applications and services. However, LP-WAN technologies pose new challenges since they have strong limitations in the available bandwidth. In general, a first step prior to a smart object being able to gain access to the network is the process of network access authentication. It involves authentication, authorization and key management operations. This process is of vital importance for operators to control network resources. However, proposals for managing network access authentication in LP-WAN are tailored to the specifics of each technology, which could introduce interoperability problems in the future. In this sense, little effort has been put so far into providing a wireless-independent solution for network access authentication in the area of LP-WAN. To fill this gap, we propose a service named Low-Overhead CoAP-EAP (LO-CoAP-EAP), which is based on previous work designed for LR-WPAN. LO-CoAP-EAP integrates the use of Authentication, Authorization and Accounting (AAA) infrastructures and the Extensible Authentication Protocol (EAP) protocol. For this integration, we use the Constrained Application Protocol (CoAP) to design a network authentication service independent of the type of LP-WAN technology. LO-CoAP-EAP represents a trade-off between flexibility, wireless technology independence, scalability and performance in LP-WAN.

  8. Modular co-evolution of metabolic networks

    Directory of Open Access Journals (Sweden)

    Yu Zhong-Hao

    2007-08-01

    Full Text Available Abstract Background The architecture of biological networks has been reported to exhibit high level of modularity, and to some extent, topological modules of networks overlap with known functional modules. However, how the modular topology of the molecular network affects the evolution of its member proteins remains unclear. Results In this work, the functional and evolutionary modularity of Homo sapiens (H. sapiens metabolic network were investigated from a topological point of view. Network decomposition shows that the metabolic network is organized in a highly modular core-periphery way, in which the core modules are tightly linked together and perform basic metabolism functions, whereas the periphery modules only interact with few modules and accomplish relatively independent and specialized functions. Moreover, over half of the modules exhibit co-evolutionary feature and belong to specific evolutionary ages. Peripheral modules tend to evolve more cohesively and faster than core modules do. Conclusion The correlation between functional, evolutionary and topological modularity suggests that the evolutionary history and functional requirements of metabolic systems have been imprinted in the architecture of metabolic networks. Such systems level analysis could demonstrate how the evolution of genes may be placed in a genome-scale network context, giving a novel perspective on molecular evolution.

  9. Weighted gene co-expression network analysis of the peripheral blood from Amyotrophic Lateral Sclerosis patients

    Directory of Open Access Journals (Sweden)

    DeYoung Joseph

    2009-08-01

    Full Text Available Abstract Background Amyotrophic Lateral Sclerosis (ALS is a lethal disorder characterized by progressive degeneration of motor neurons in the brain and spinal cord. Diagnosis is mainly based on clinical symptoms, and there is currently no therapy to stop the disease or slow its progression. Since access to spinal cord tissue is not possible at disease onset, we investigated changes in gene expression profiles in whole blood of ALS patients. Results Our transcriptional study showed dramatic changes in blood of ALS patients; 2,300 probes (9.4% showed significant differential expression in a discovery dataset consisting of 30 ALS patients and 30 healthy controls. Weighted gene co-expression network analysis (WGCNA was used to find disease-related networks (modules and disease related hub genes. Two large co-expression modules were found to be associated with ALS. Our findings were replicated in a second (30 patients and 30 controls and third dataset (63 patients and 63 controls, thereby demonstrating a highly significant and consistent association of two large co-expression modules with ALS disease status. Ingenuity Pathway Analysis of the ALS related module genes implicates enrichment of functional categories related to genetic disorders, neurodegeneration of the nervous system and inflammatory disease. The ALS related modules contain a number of candidate genes possibly involved in pathogenesis of ALS. Conclusion This first large-scale blood gene expression study in ALS observed distinct patterns between cases and controls which may provide opportunities for biomarker development as well as new insights into the molecular mechanisms of the disease.

  10. Distribution of authorship in a scientific work.

    Science.gov (United States)

    Petroianu, Andy

    2012-01-01

    To publish became almost compulsory in Medicine. There is no doubt about the importance of publishing research, but the ordering of its authors is not easy. The lack of internationally accepted criteria led to the establishment of several groups or conventions particularized medical and scientific sectors. To present numerical method to establish rule of value to people who carried out the research, and whether or not incorporated as authors. The proposed score is based on the needs of each step when conducting a scientific work. They were divided into topics in which the main ones were: 1) scientific criteria for authorship; 2) create the idea that originated the work and develop hypotheses; 3) structure the method of work; 4) guiding the work; 5) write the manuscript; 6) coordinate the group that carried out the work; 7) reviewing the literature; 8) suggestions incorporated into the work; 9) to solve fundamental problems of labor; 10) to collect data; 11) presentation at scientific meetings; 12 ) lead the job and raise funds; 13) providing patients or material; 14) to do the routine needs; 15) specific fee to participate; 16) criteria for ranking the authors; 17) honorary author; 18) usurpation of the main authorship, 19) acknowledgments . It is important to emphasize that, to prevent major conflicts, the group that is willing to conduct a scientific work should establish at the outset, as objectively as possible, the criteria to be adopted for distribution of authorship. The subjective criteria here proposed avoid interference and prevent conflicts of interest.

  11. Plagiarism, Intertextuality and Emergent Authorship in University Students' Academic Writing

    Directory of Open Access Journals (Sweden)

    Celia Helen Thompson

    2009-08-01

    Full Text Available Issues of plagiarism, intertextuality and authorial presence in academic writing are fundamental to the teaching and learning activities of all university lecturers and their students. Knowing how to assist students, particularly those who speak English as an additional language (EAL, to develop a sense of text/knowledge ownership and authorial presence in the creation of discipline-based scholarly texts can be especially challenging. Clarifying what is encompassed by the notion of ‘common knowledge’ is also central to this process. The aim of this paper is to explore the political and intertextual nature of text/knowledge construction and emergent student authorship through the analysis of interviews and written assignments from two EAL students, together with interview data from lecturers from relevant disciplinary fields. Drawing on the work of Bakhtin, Kristeva and Penrose and Geisler, I conclude by suggesting that it is by engaging with, rather than fearing, intertextual connections, that we can create a dialogic pedagogy for academic writing that will enable students to articulate an authoritative authorial identity of their own. The importance of lecturer intervention during the drafting stages of text production is also emphasised. Keywords: plagiarism; intertextuality; emergent authorship; academic writing

  12. Building gene co-expression networks using transcriptomics data for systems biology investigations

    DEFF Research Database (Denmark)

    Kadarmideen, Haja; Watson-Haigh, Nathan S.

    2012-01-01

    Gene co-expression networks (GCN), built using high-throughput gene expression data are fundamental aspects of systems biology. The main aims of this study were to compare two popular approaches to building and analysing GCN. We use real ovine microarray transcriptomics datasets representing four......) is connected within a network. The two GCN construction methods used were, Weighted Gene Co-expression Network Analysis (WGCNA) and Partial Correlation and Information Theory (PCIT) methods. Nodes were ranked based on their connectivity measures in each of the four different networks created by WGCNA and PCIT...... (with > 20000 genes) access to large computer clusters, particularly those with larger amounts of shared memory is recommended....

  13. Teaching authorship and publication practices in the biomedical and life sciences.

    Science.gov (United States)

    Macrina, Francis L

    2011-06-01

    Examination of a limited number of publisher's Instructions for Authors, guidelines from two scientific societies, and the widely accepted policy document of the International Committee of Medical Journal Editors (ICMJE) provided useful information on authorship practices. Three of five journals examined (Nature, Science, and the Proceedings of the National Academy of Sciences) publish papers across a variety of disciplines. One is broadly focused on topics in medical research (New England Journal of Medicine) and one publishes research reports in a single discipline (Journal of Bacteriology). Similar elements of publication policy and accepted practices were found across the policies of these journals articulated in their Instructions for Authors. A number of these same elements were found in the professional society guidelines of the Society for Neuroscience and the American Chemical Society, as well as the ICMJE Uniform Requirements for Manuscripts Submitted to Biomedical Journals. Taken together, these sources provide the basis for articulating best practices in authorship in scientific research. Emerging from this material is a definition of authorship, as well as policy statements on duplicative publication, conflict of interest disclosure, electronic access, data sharing, digital image integrity, and research requiring subjects' protection, including prior registration of clinical trials. These common elements provide a foundation for teaching about scientific authorship and publication practices across biomedical and life sciences disciplines.

  14. Neural Networks to model the innovativeness perception of co-creative firms

    DEFF Research Database (Denmark)

    Tanev, Stoyan

    2012-01-01

    contribution is to make a quantitative analysis in order to assess the relationship between value co-creation and innovation in technology-driven firms: we are using Artificial Neural Network (ANN) to investigate the relationship between value co-creation and innovativeness, and Self Organising Map (SOM) models...

  15. The Missing Tooth: Case Illustrations of a Child's Assembled, Out-of-School Authorship

    Science.gov (United States)

    Winters, Kari-Lynn

    2012-01-01

    Case illustrations of a six-year-old boy's adventures with a missing tooth are used in this paper to re-define a broader notion of authorship. Drawing on theories of social semiotics, New Literacy Studies (NLS), and critical positioning, this notion of authorship not only interweaves the boy's preferred modes of meaning-making and communication,…

  16. Trends in Authorship of Articles in Major Ophthalmology Journals by Gender, 2002-2014.

    Science.gov (United States)

    Mimouni, Michael; Zayit-Soudry, Shiri; Segal, Ori; Barak, Yoreh; Nemet, Arie Y; Shulman, Shiri; Geffen, Noa

    2016-08-01

    To evaluate trends in the prevalence of women authors in ophthalmology in recent years. Cohort study. Authors listed in publications of 6 leading ophthalmology journals between January 2002 and December 2014. Using the PubMed search engine, we conducted an observational study of trends in gender distribution of all authors in 6 leading ophthalmology journals between January 2002 and December 2014. In multiauthored articles, the first listed author often is the lead investigator and the last author is the senior author. Therefore, the full names and positions (first, middle, or last) of all authors in every article were collected. A Google-based name identifier was used to assign the gender of authors. Proportion of women authors throughout the study period in all journals, general ophthalmology versus subspecialty journals, and basic science versus clinical research journals. Furthermore, we assessed the proportion of women in different authorship positions (first, middle, and last). A total of 102 254 authors from 23 026 published articles were analyzed. There was a significant rise over time in the percentage of women authors, with a steeper slope for first authors than for last authors (P<0.001), although in 2014, women authors were less than the 50% mark in all categories of authorship. The rise in the percentage of women authors was similar in basic and clinical research, but was steeper for first authorship than for last authorship (P<0.001). In all 3 authorship positions (first, middle, or last), women's contributions consistently were higher in basic research publications. The rise in the percentage of women authors was significantly steeper for general journals than for subspecialty journals (P<0.001). There was no significant rise for last authorship in subspecialty journals. In all 3 authorship positions, the proportion of women was consistently higher in general ophthalmology journals than for subspecialty journals. Despite an overall increase in

  17. Authorship ethics in global health research partnerships between researchers from low or middle income countries and high income countries.

    Science.gov (United States)

    Smith, Elise; Hunt, Matthew; Master, Zubin

    2014-05-28

    Over the past two decades, the promotion of collaborative partnerships involving researchers from low and middle income countries with those from high income countries has been a major development in global health research. Ideally, these partnerships would lead to more equitable collaboration including the sharing of research responsibilities and rewards. While collaborative partnership initiatives have shown promise and attracted growing interest, there has been little scholarly debate regarding the fair distribution of authorship credit within these partnerships. In this paper, we identify four key authorship issues relevant to global health research and discuss their ethical and practical implications. First, we argue that authorship guidance may not adequately apply to global health research because it requires authors to write or substantially revise the manuscript. Since most journals of international reputation in global health are written in English, this would systematically and unjustly exclude non-English speaking researchers even if they have substantially contributed to the research project. Second, current guidance on authorship order does not address or mitigate unfair practices which can occur in global health research due to power differences between researchers from high and low-middle income countries. It also provides insufficient recognition of "technical tasks" such as local participant recruitment. Third, we consider the potential for real or perceived editorial bias in medical science journals in favour of prominent western researchers, and the risk of promoting misplaced credit and/or prestige authorship. Finally, we explore how diverse cultural practices and expectations regarding authorship may create conflict between researchers from low-middle and high income countries and contribute to unethical authorship practices. To effectively deal with these issues, we suggest: 1) undertaking further empirical and conceptual research regarding

  18. Pareto distance for multi-layer network analysis

    DEFF Research Database (Denmark)

    Magnani, Matteo; Rossi, Luca

    2013-01-01

    services, e.g., Facebook, Twitter, LinkedIn and Foursquare. As a result, the analysis of on-line social networks requires a wider scope and, more technically speaking, models for the representation of this fragmented scenario. The recent introduction of more realistic layered models has however determined......Social Network Analysis has been historically applied to single networks, e.g., interaction networks between co-workers. However, the advent of on-line social network sites has emphasized the stratified structure of our social experience. Individuals usually spread their identities over multiple...

  19. Cross-border Co-operation and Policy Networks in West Africa

    DEFF Research Database (Denmark)

    Trémolières, Marie; Walther, Olivier

    This publication examines how policy actors involved in cross-border co-operation contribute to the regional integration process in West Africa. It uses a pioneering methodology, known as social network analysis, to visualise the formal and informal relationships between actors involved in cross...... West Africa to develop cross-border initiatives in a number of ways. Combining these two analyses with the perceptions of regional policy makers as to which border areas they consider as priorities for regional integration, the publication concludes with the analytical foundations for more effective......-border policy networks, showing that borders have notable and diverse impacts on exchanges of information and the relative power of networks. The report then analyses a range of regional indicators of co-operation potential, visually demonstrating that borders can also affect the ability of sub-regions within...

  20. Shakespeare and Middleton’s Co-Authorship of Timon of Athens

    Directory of Open Access Journals (Sweden)

    Eilidh Kane

    2016-03-01

    Full Text Available The essay focuses on Shakespeare’s collaboration with Thomas Middleton on Timon of Athens (1605-1606. It provides new evidence concerning the patterns of imagery in the play and argues that these support the authorial divisions established by earlier attribution studies. Beyond the issue of ‘who wrote what’ are questions about how Shakespeare co-wrote with Middleton. Previous analysis of the play has suggested that Timon was co-written consecutively, Shakespeare first, Middleton second. However, it is argued here that a mixture of consecutive and simultaneous co-writing would better explain the play as it stands. In the course of making the case, the essay reasserts the value of attribution evidence to the study of collaboration. Middleton’s skill in writing cynical urban scenes for his city comedies is often cited as the reason why he and Shakespeare worked together on Timon; and it is argued that Middleton’s early pamphlets should also be considered as evidence of his ability to satirise greed, and therefore as a reason why he was valuable to Shakespeare as a collaborator.

  1. Temporal context for authorship attribution

    DEFF Research Database (Denmark)

    Hansen, Niels Dalum; Lioma, Christina; Larsen, Birger

    2014-01-01

    A study of temporal aspects of authorship attribution - a task which aims to distinguish automatically between texts written by different authors by measuring textual features. This task is important in a number of areas, including plagiarism detection in secondary education, which we study...... world data from Danish secondary school students show 84% prediction accuracy when using all available material and 71.9% prediction accuracy when using only the five most recent writing samples from each student....

  2. Measuring science–technology interactions using patent citations and author-inventor links: an exploration analysis from Chinese nanotechnology

    International Nuclear Information System (INIS)

    Wang Gangbo; Guan Jiancheng

    2011-01-01

    This article contributes to the growing study on the interactions between science and technology with China’s evidence in the field of nanotechnology, based on the database of United States Patent and Trademark Office. The analysis is focused during the period of 1991–2008, a rapid increasing period for the development of nanotechnology. Using the non-patent references cited by patents, we first investigate the science–technology connections in the context of Chinese nanotechnology, especially in institutional sectors and its application fields. Those patents, produced by academic researchers and directed towards basic scientific knowledge, generally cite more scientific references with a higher proportion of self-citations. It is interesting to find that patents contributed by collaborations between public organizations and corporations seldom contain scientific references. Following an interesting path on matching the data of publications and patents, we establish the author-inventor links in this emerging field. Author-inventors, who are co-active in publishing and patenting, are at the very top of the most prolific and highly cited researchers. Finally, we employ social network analysis to explore the characteristics of scientific and technological networks generated by co-authorship and co-invention data, to investigate the position and the role of patenting–publishing scientists in these research networks.

  3. Epigenomic Co-localization and Co-evolution Reveal a Key Role for 5hmC as a Communication Hub in the Chromatin Network of ESCs

    Directory of Open Access Journals (Sweden)

    David Juan

    2016-02-01

    Full Text Available Summary: Epigenetic communication through histone and cytosine modifications is essential for gene regulation and cell identity. Here, we propose a framework that is based on a chromatin communication model to get insight on the function of epigenetic modifications in ESCs. The epigenetic communication network was inferred from genome-wide location data plus extensive manual annotation. Notably, we found that 5-hydroxymethylcytosine (5hmC is the most-influential hub of this network, connecting DNA demethylation to nucleosome remodeling complexes and to key transcription factors of pluripotency. Moreover, an evolutionary analysis revealed a central role of 5hmC in the co-evolution of chromatin-related proteins. Further analysis of regions where 5hmC co-localizes with specific interactors shows that each interaction points to chromatin remodeling, stemness, differentiation, or metabolism. Our results highlight the importance of cytosine modifications in the epigenetic communication of ESCs. : 5-hydroxymethylcytosine (5hmC plays a key role in the epigenomic communication network of embryonic stem cells. Juan et al. build a communication network based in co-localization of epigenomic data and literature. The analysis of the network and its components reveals that proteins reading and editing 5hmC co-evolve and serve as links between diverse molecular processes.

  4. Authorship matrix: a rational approach to quantify individual contributions and responsibilities in multi-author scientific articles.

    Science.gov (United States)

    Clement, T Prabhakar

    2014-06-01

    We propose a rational method for addressing an important question-who deserves to be an author of a scientific article? We review various contentious issues associated with this question and recommend that the scientific community should view authorship in terms of contributions and responsibilities, rather than credits. We propose a new paradigm that conceptually divides a scientific article into four basic elements: ideas, work, writing, and stewardship. We employ these four fundamental elements to modify the well-known International Committee of Medical Journal Editors (ICMJE) authorship guidelines. The modified ICMJE guidelines are then used as the basis to develop an approach to quantify individual contributions and responsibilities in multi-author articles. The outcome of the approach is an authorship matrix, which can be used to answer several nagging questions related to authorship.

  5. Cross disease analysis of co-functional microRNA pairs on a reconstructed network of disease-gene-microRNA tripartite.

    Science.gov (United States)

    Peng, Hui; Lan, Chaowang; Zheng, Yi; Hutvagner, Gyorgy; Tao, Dacheng; Li, Jinyan

    2017-03-24

    MicroRNAs always function cooperatively in their regulation of gene expression. Dysfunctions of these co-functional microRNAs can play significant roles in disease development. We are interested in those multi-disease associated co-functional microRNAs that regulate their common dysfunctional target genes cooperatively in the development of multiple diseases. The research is potentially useful for human disease studies at the transcriptional level and for the study of multi-purpose microRNA therapeutics. We designed a computational method to detect multi-disease associated co-functional microRNA pairs and conducted cross disease analysis on a reconstructed disease-gene-microRNA (DGR) tripartite network. The construction of the DGR tripartite network is by the integration of newly predicted disease-microRNA associations with those relationships of diseases, microRNAs and genes maintained by existing databases. The prediction method uses a set of reliable negative samples of disease-microRNA association and a pre-computed kernel matrix instead of kernel functions. From this reconstructed DGR tripartite network, multi-disease associated co-functional microRNA pairs are detected together with their common dysfunctional target genes and ranked by a novel scoring method. We also conducted proof-of-concept case studies on cancer-related co-functional microRNA pairs as well as on non-cancer disease-related microRNA pairs. With the prioritization of the co-functional microRNAs that relate to a series of diseases, we found that the co-function phenomenon is not unusual. We also confirmed that the regulation of the microRNAs for the development of cancers is more complex and have more unique properties than those of non-cancer diseases.

  6. Attributing Authorship in the Noisy Digitized Correspondence of Jacob and Wilhelm Grimm

    Directory of Open Access Journals (Sweden)

    Greta Franzini

    2018-04-01

    Full Text Available This article presents the results of a multidisciplinary project aimed at better understanding the impact of different digitization strategies in computational text analysis. More specifically, it describes an effort to automatically discern the authorship of Jacob and Wilhelm Grimm in a body of uncorrected correspondence processed by HTR (Handwritten Text Recognition and OCR (Optical Character Recognition, reporting on the effect this noise has on the analyses necessary to computationally identify the different writing style of the two brothers. In summary, our findings show that OCR digitization serves as a reliable proxy for the more painstaking process of manual digitization, at least when it comes to authorship attribution. Our results suggest that attribution is viable even when using training and test sets from different digitization pipelines. With regards to HTR, this research demonstrates that even though automated transcription significantly increases the risk of text misclassification when compared to OCR, a cleanliness above ≈ 20% is already sufficient to achieve a higher-than-chance probability of correct binary attribution.

  7. CoNekT: an open-source framework for comparative genomic and transcriptomic network analyses.

    Science.gov (United States)

    Proost, Sebastian; Mutwil, Marek

    2018-05-01

    The recent accumulation of gene expression data in the form of RNA sequencing creates unprecedented opportunities to study gene regulation and function. Furthermore, comparative analysis of the expression data from multiple species can elucidate which functional gene modules are conserved across species, allowing the study of the evolution of these modules. However, performing such comparative analyses on raw data is not feasible for many biologists. Here, we present CoNekT (Co-expression Network Toolkit), an open source web server, that contains user-friendly tools and interactive visualizations for comparative analyses of gene expression data and co-expression networks. These tools allow analysis and cross-species comparison of (i) gene expression profiles; (ii) co-expression networks; (iii) co-expressed clusters involved in specific biological processes; (iv) tissue-specific gene expression; and (v) expression profiles of gene families. To demonstrate these features, we constructed CoNekT-Plants for green alga, seed plants and flowering plants (Picea abies, Chlamydomonas reinhardtii, Vitis vinifera, Arabidopsis thaliana, Oryza sativa, Zea mays and Solanum lycopersicum) and thus provide a web-tool with the broadest available collection of plant phyla. CoNekT-Plants is freely available from http://conekt.plant.tools, while the CoNekT source code and documentation can be found at https://github.molgen.mpg.de/proost/CoNekT/.

  8. What is Authorship, and What Should it Be? A Survey of Prominent Guidelines for Determining Authorship in Scientific Publications

    Science.gov (United States)

    Osborne, Jason W.; Holland, Abigail

    2009-01-01

    Before the mid 20th century most scientific writing was solely authored (Claxton, 2005; Greene, 2007) and thus it is only relatively recently, as science has grown more complex, that the ethical and procedural issues around authorship have arisen. Fields as diverse as medicine (International Committee of Medical Journal Editors, 2008), mathematics…

  9. Female authorship in emergency medicine parallels women practicing academic emergency medicine.

    Science.gov (United States)

    Tinjum, Banu E; Getto, Leila; Tiedemann, Juliah; Marri, Maaya; Brodowy, Michelle; Bollinger, Melissa; O'Connor, Robert E; Breyer, Michael J

    2011-12-01

    Studies have shown that women in emergency medicine (EM) lag behind their male counterparts in academic productivity. We compared the proportion of female attending physicians from EM academic programs to the proportion of female first or second authors of original scientific manuscripts and case reports from four major EM journals in a single year. We used a retrospective cross-sectional design. Original scientific manuscripts and case reports from four major EM journals published in 2005: Academic Emergency Medicine, Annals of Emergency Medicine, American Journal of Emergency Medicine, and Journal of Emergency Medicine were reviewed to determine genders of first and second authors. The proportion of female first or second authorship was then compared to the proportion of female EM attending physicians from 134 academic EM programs in the United States. Data were analyzed using Pearson's chi-squared and Clopper-Pearson binomial confidence intervals as appropriate. A p-value of ≤ 0.05 was considered significant. The percentage of female faculty; 940/3571 (26.32%, 95% confidence interval [CI] 24.9-27.8%) vs. the percentage of female first or second authorship 289/1123 (25.73%, 95% CI 23.3-28.4%) was not statistically significant (p = 0.562). There was no difference in the proportion of male and female authors with multiple manuscripts (p = 0.889). As measured by first and second authorship, there was no discrepancy between the proportion of female EM faculty and the proportion of female authorship in EM literature from 2005. Copyright © 2011 Elsevier Inc. All rights reserved.

  10. CO2 Urban Synthesis and Analysis ("CO2-USA") Network

    Science.gov (United States)

    Lin, J. C.; Hutyra, L.; Loughner, C.; Stein, A. F.; Lusk, K.; Mitchell, L.; Gately, C.; Wofsy, S. C.

    2017-12-01

    Emissions of carbon associated with cities comprise a large component of the anthropogenic source. A number of cities have announced plans to reduce greenhouse gas emissions, but the scientific knowledge to quantitatively track emissions and assess the efficacy of mitigation is lacking. As the global population increasingly resides in urban regions, scientific knowledge about how much, where, and why a particular city emits carbon becomes increasingly important. To address this gap, researchers have initiated studies of carbon emissions and cycling in several U.S. cities, making it timely to develop a collaborative network to exchange information on community standards and common measurements, facilitate data sharing, and create analysis frameworks and cross-city syntheses to catalyze a new generation of researchers and enable new collaborations tackling important objectives that are difficult to address in isolation. We describe initial results from an incipient network focusing initially on cities in the U.S. with low barriers of entry that entrains a cross-section of U.S. urban centers with varying characteristics: size, population density, vegetation, urban form, infrastructure, development rates, climate, and meteorological patterns. Results will be reported that emerge from an initial workshop covering data harmonization & integration, inventory comparison, stakeholder outreach, network design, inverse modeling, and collaboration.

  11. Twenty-year trends of authorship and sampling in applied biomechanics research.

    Science.gov (United States)

    Knudson, Duane

    2012-02-01

    This study documented the trends in authorship and sampling in applied biomechanics research published in the Journal of Applied Biomechanics and ISBS Proceedings. Original research articles of the 1989, 1994, 1999, 2004, and 2009 volumes of these serials were reviewed, excluding reviews, modeling papers, technical notes, and editorials. Compared to 1989 volumes, the mean number of authors per paper significantly increased (35 and 100%, respectively) in the 2009 volumes, along with increased rates of hyperauthorship, and a decline in rates of single authorship. Sample sizes varied widely across papers and did not appear to change since 1989.

  12. The role of gender in scholarly authorship.

    Directory of Open Access Journals (Sweden)

    Jevin D West

    Full Text Available Gender disparities appear to be decreasing in academia according to a number of metrics, such as grant funding, hiring, acceptance at scholarly journals, and productivity, and it might be tempting to think that gender inequity will soon be a problem of the past. However, a large-scale analysis based on over eight million papers across the natural sciences, social sciences, and humanities reveals a number of understated and persistent ways in which gender inequities remain. For instance, even where raw publication counts seem to be equal between genders, close inspection reveals that, in certain fields, men predominate in the prestigious first and last author positions. Moreover, women are significantly underrepresented as authors of single-authored papers. Academics should be aware of the subtle ways that gender disparities can occur in scholarly authorship.

  13. The role of gender in scholarly authorship.

    Science.gov (United States)

    West, Jevin D; Jacquet, Jennifer; King, Molly M; Correll, Shelley J; Bergstrom, Carl T

    2013-01-01

    Gender disparities appear to be decreasing in academia according to a number of metrics, such as grant funding, hiring, acceptance at scholarly journals, and productivity, and it might be tempting to think that gender inequity will soon be a problem of the past. However, a large-scale analysis based on over eight million papers across the natural sciences, social sciences, and humanities reveals a number of understated and persistent ways in which gender inequities remain. For instance, even where raw publication counts seem to be equal between genders, close inspection reveals that, in certain fields, men predominate in the prestigious first and last author positions. Moreover, women are significantly underrepresented as authors of single-authored papers. Academics should be aware of the subtle ways that gender disparities can occur in scholarly authorship.

  14. The scientific production of Italian agricultural engineers: a bibliometric network analysis concerning the scientific sector AGR/10 Rural buildings and agro-forestry territory

    Directory of Open Access Journals (Sweden)

    Andrea De Montis

    2017-03-01

    Full Text Available According to a worldwide well-known attitude, also in Italy, the assessment of scientific production in the last decades has been progressively based on the analysis of the impact through bibliometric variables. Various data sets, such as Scopus by Elsevier and Web of Science by Thomson Reuters, are designed and maintained to index a steadily increasing range of essays: mostly journal articles, book chapters, and conference proceedings. The indexing relays on the capacity to evaluate and update specific impact measures by keeping track of the citations representing the relations between the essays. The related opportunity to interpret bibliographic systems as research and development (R&D networks attracted the interest of scientists operating, beyond the field of bibliometric analysis, in the realm of social networking. Network analysis belongs to mechanical statistics and is able to make sense of interconnected systems including very large sets of nodes and links. In this paper, we present a network approach to the review of the scientific production in the time period January, 2003-June, 2016 of Italian agricultural engineers, namely scientists belonging to the Italian ministerial scientific disciplinary sector AGR/10 - rural buildings and agro-forestry territory. Starting from 238 articles indexed in the Web of Knowledge database and published by 87 AGR/10 scholars, we apply four network analysis approaches to the study of the citations among articles, the most influential journals and topics, the co-authorship, the most favourite keywords with their evolution in time, and the communities’ pattern. We discover that Italian agricultural engineers are interlaced in a sparse network with a still limited tendency toward citing each other and are inclined to team up in established research groups based on a single university. As for the dualism between rural buildings and territory, we document on a relevant expansion of the issues related to

  15. Dengue research networks: building evidence for policy and planning in Brazil.

    Science.gov (United States)

    de Paula Fonseca E Fonseca, Bruna; Zicker, Fabio

    2016-11-08

    The analysis of scientific networks has been applied in health research to map and measure relationships between researchers and institutions, describing collaboration structures, individual roles, and research outputs, and helping the identification of knowledge gaps and cooperation opportunities. Driven by dengue continued expansion in Brazil, we explore the contribution, dynamics and consolidation of dengue scientific networks that could ultimately inform the prioritisation of research, financial investments and health policy. Social network analysis (SNA) was used to produce a 20-year (1995-2014) retrospective longitudinal evaluation of dengue research networks within Brazil and with its partners abroad, with special interest in describing institutional collaboration and their research outputs. The analysis of institutional co-authorship showed a significant expansion of collaboration over the years, increased international involvement, and ensured a shift from public health research toward vector control and basic biomedical research, probably as a reflection of the expansion of transmission, high burden and increasing research funds from the Brazilian government. The analysis identified leading national organisations that maintained the research network connectivity, facilitated knowledge exchange and reduced network vulnerability. SNA proved to be a valuable tool that, along with other indicators, can strengthen a knowledge platform to inform future policy, planning and funding decisions. The paper provides relevant information to policy and planning for dengue research as it reveals: (1) the effectiveness of the research network in knowledge generation, sharing and diffusion; (2) the near-absence of collaboration with the private sector; and (3) the key central organisations that can support strategic decisions on investments, development and implementation of innovations. In addition, the increase in research activities and collaboration has not yet

  16. Application of neural networks to quantitative spectrometry analysis

    International Nuclear Information System (INIS)

    Pilato, V.; Tola, F.; Martinez, J.M.; Huver, M.

    1999-01-01

    Accurate quantitative analysis of complex spectra (fission and activation products), relies upon experts' knowledge. In some cases several hours, even days of tedious calculations are needed. This is because current software is unable to solve deconvolution problems when several rays overlap. We have shown that such analysis can be correctly handled by a neural network, and the procedure can be automated with minimum laboratory measurements for networks training, as long as all the elements of the analysed solution figure in the training set and provided that adequate scaling of input data is performed. Once the network has been trained, analysis is carried out in a few seconds. On submitting to a test between several well-known laboratories, where unknown quantities of 57 Co, 58 Co, 85 Sr, 88 Y, 131 I, 139 Ce, 141 Ce present in a sample had to be determined, the results yielded by our network classed it amongst the best. The method is described, including experimental device and measures, training set designing, relevant input parameters definition, input data scaling and networks training. Main results are presented together with a statistical model allowing networks error prediction

  17. Autores e autoria em periódicos brasileiros de ciência da informação

    Authors and authorship in brazilian information science journals

    OpenAIRE

    Maria del Carmen Rivera Bohn

    2003-01-01

    This article discusses issues of authorship. It presents the analysis of 86 journal articles with 1528 bibliographical entries. The articles were all published in 2001 in four Brazilian journals of Information Science. Several characteristics of the authors were considered. Among them are the authors’ academic qualification, function and job held; individual and joint authorship, language of publication, papers published by sex and nationality and self-citation. Data show that the most signif...

  18. Co-expression Network Approach to Studying the Effects of Botulinum Neurotoxin-A.

    Science.gov (United States)

    Mukund, Kavitha; Ward, Samuel R; Lieber, Richard L; Subramaniam, Shankar

    2017-10-16

    Botulinum Neurotoxin A (BoNT-A) is a potent neurotoxin with several clinical applications.The goal of this study was to utilize co-expression network theory to analyze temporal transcriptional data from skeletal muscle after BoNT-A treatment. Expression data for 2000 genes (extracted using a ranking heuristic) served as the basis for this analysis. Using weighted gene co-expression network analysis (WGCNA), we identified 19 co-expressed modules, further hierarchically clustered into 5 groups. Quantifying average expression and co-expression patterns across these groups revealed temporal aspects of muscle's response to BoNT-A. Functional analysis revealed enrichment of group 1 with metabolism; group 5 with contradictory functions of atrophy and cellular recovery; and groups 2 and 3 with extracellular matrix (ECM) and non-fast fiber isoforms. Topological positioning of two highly ranked, significantly expressed genes- Dclk1 and Ostalpha within group 5 suggested possible mechanistic roles in recovery from BoNT-A induced atrophy. Phenotypic correlations of groups with titin and myosin protein content further emphasized the effect of BoNT-A on the sarcomeric contraction machinery in early phase of chemodenervation. In summary, our approach revealed a hierarchical functional response to BoNT-A induced paralysis with early metabolic and later ECM responses and identified putative biomarkers associated with chemodenervation. Additionally, our results provide an unbiased validation of the response documented in our previous workBotulinum Neurotoxin A (BoNT-A) is a potent neurotoxin with several clinical applications.The goal of this study was to utilize co-expression network theory to analyze temporal transcriptional data from skeletal muscle after BoNT-A treatment. Expression data for 2000 genes (extracted using a ranking heuristic) served as the basis for this analysis. Using weighted gene co-expression network analysis (WGCNA), we identified 19 co-expressed modules

  19. Publishing at "the request of friends": Alexander Ross and James Beattie’s Authorial Networks in Eighteenth-Century Aberdeen

    OpenAIRE

    Ruth Knezevich

    2016-01-01

    Authorship in eighteenth-century Aberdeen often functioned differently than in London and Edinburgh. The Aberdeen model of authorship relied heavily on an intricate network of booksellers, patrons, readers, and critics involved in preparing a text to be consumed by the reading public; yet the prevailing narrative of the author as rising to “inspired genius” disallows for this network. The authorial career of poet Alexander Ross and his friend/mentorship with philosopher James Beattie offers a...

  20. [Co-author and keyword networks and their clustering appearance in preventive medicine fields in Korea: analysis of papers in the Journal of Preventive Medicine and Public Health, 1991~2006].

    Science.gov (United States)

    Jung, Minsoo; Chung, Dongjun

    2008-01-01

    This study evaluated knowledge structure and its effect factor by analysis of co-author and keyword networks in Korea's preventive medicine sector. The data was extracted from 873 papers listed in the Journal of Preventive Medicine and Public Health, and was transformed into a co-author and keyword matrix where the existence of a 'link' was judged by impact factors calculated by the weight value of the role and rate of author participation. Research achievement was dependent upon the author's status and networking index, as analyzed by neighborhood degree, multidimensional scaling, correspondence analysis, and multiple regression. Co-author networks developed as randomness network in the center of a few high-productivity researchers. In particular, closeness centrality was more developed than degree centrality. Also, power law distribution was discovered in impact factor and research productivity by college affiliation. In multiple regression, the effect of the author's role was significant in both the impact factor calculated by the participatory rate and the number of listed articles. However, the number of listed articles varied by sex. This study shows that the small world phenomenon exists in co-author and keyword networks in a journal, as in citation networks. However, the differentiation of knowledge structure in the field of preventive medicine was relatively restricted by specialization.

  1. Species co-occurrence networks: Can they reveal trophic and non-trophic interactions in ecological communities?

    Science.gov (United States)

    Freilich, Mara A; Wieters, Evie; Broitman, Bernardo R; Marquet, Pablo A; Navarrete, Sergio A

    2018-03-01

    -based ecological theory to interpret network variability and stability. Co-occurrence networks may be particularly valuable for analysis of community dynamics that blends interactions and environment, rather than pairwise interactions alone. © 2018 by the Ecological Society of America.

  2. Weaving the native web: using social network analysis to demonstrate the value of a minority career development program.

    Science.gov (United States)

    Buchwald, Dedra; Dick, Rhonda Wiegman

    2011-06-01

    American Indian and Alaska Native scientists are consistently among the most underrepresented minority groups in health research. The authors used social network analysis (SNA) to evaluate the Native Investigator Development Program (NIDP), a career development program for junior Native researchers established as a collaboration between the University of Washington and the University of Colorado Denver. The study focused on 29 trainees and mentors who participated in the NIDP. Data were collected on manuscripts and grant proposals produced by participants from 1998 to 2007. Information on authorship of manuscripts and collaborations on grant applications was used to conduct social network analyses with three measures of centrality and one measure of network reach. Both visual and quantitative analyses were performed. Participants in the NIDP collaborated on 106 manuscripts and 83 grant applications. Although three highly connected individuals, with critical and central roles in the program, accounted for much of the richness of the network, both current core faculty and "graduates" of the program were heavily involved in collaborations on manuscripts and grants. This study's innovative application of SNA demonstrates that collaborative relationships can be an important outcome of career development programs for minority investigators and that an analysis of these relationships can provide a more complete assessment of the value of such programs.

  3. Deciphering microbial interactions and detecting keystone species with co-occurrence networks

    Directory of Open Access Journals (Sweden)

    David eBerry

    2014-05-01

    Full Text Available Co-occurrence networks produced from microbial survey sequencing data are frequently used to identify interactions between community members. While this approach has potential to reveal ecological processes, it has been insufficiently validated due to the technical limitations inherent in studying complex microbial ecosystems. Here, we simulate multi-species microbial communities with known interaction patterns using generalized Lotka-Volterra dynamics, construct co-occurrence networks, and evaluate how well networks reveal the underlying interactions, and how experimental and ecological parameters can affect network inference and interpretation. We find that co-occurrence networks can recapitulate interaction networks under certain conditions, but that they lose interpretability when the effects of habitat filtering become significant. We demonstrate that networks suffer from local hot spots of spurious correlation in the neighborhood of hub species that engage in many interactions. We also identify topological features associated with keystone species in co-occurrence networks. This study provides a substantiated framework to guide environmental microbiologists in the construction and interpretation of co-occurrence networks from microbial survey datasets.

  4. Deciphering microbial interactions and detecting keystone species with co-occurrence networks.

    Science.gov (United States)

    Berry, David; Widder, Stefanie

    2014-01-01

    Co-occurrence networks produced from microbial survey sequencing data are frequently used to identify interactions between community members. While this approach has potential to reveal ecological processes, it has been insufficiently validated due to the technical limitations inherent in studying complex microbial ecosystems. Here, we simulate multi-species microbial communities with known interaction patterns using generalized Lotka-Volterra dynamics. We then construct co-occurrence networks and evaluate how well networks reveal the underlying interactions and how experimental and ecological parameters can affect network inference and interpretation. We find that co-occurrence networks can recapitulate interaction networks under certain conditions, but that they lose interpretability when the effects of habitat filtering become significant. We demonstrate that networks suffer from local hot spots of spurious correlation in the neighborhood of hub species that engage in many interactions. We also identify topological features associated with keystone species in co-occurrence networks. This study provides a substantiated framework to guide environmental microbiologists in the construction and interpretation of co-occurrence networks from microbial survey datasets.

  5. Application of Weighted Gene Co-expression Network Analysis for Data from Paired Design.

    Science.gov (United States)

    Li, Jianqiang; Zhou, Doudou; Qiu, Weiliang; Shi, Yuliang; Yang, Ji-Jiang; Chen, Shi; Wang, Qing; Pan, Hui

    2018-01-12

    Investigating how genes jointly affect complex human diseases is important, yet challenging. The network approach (e.g., weighted gene co-expression network analysis (WGCNA)) is a powerful tool. However, genomic data usually contain substantial batch effects, which could mask true genomic signals. Paired design is a powerful tool that can reduce batch effects. However, it is currently unclear how to appropriately apply WGCNA to genomic data from paired design. In this paper, we modified the current WGCNA pipeline to analyse high-throughput genomic data from paired design. We illustrated the modified WGCNA pipeline by analysing the miRNA dataset provided by Shiah et al. (2014), which contains forty oral squamous cell carcinoma (OSCC) specimens and their matched non-tumourous epithelial counterparts. OSCC is the sixth most common cancer worldwide. The modified WGCNA pipeline identified two sets of novel miRNAs associated with OSCC, in addition to the existing miRNAs reported by Shiah et al. (2014). Thus, this work will be of great interest to readers of various scientific disciplines, in particular, genetic and genomic scientists as well as medical scientists working on cancer.

  6. Analysis of a summary network of co-infection in humans reveals that parasites interact most via shared resources

    OpenAIRE

    Griffiths, Emily C; Pedersen, Amy B; Fenton, Andy; Petchey, Owen L

    2014-01-01

    Simultaneous infection by multiple parasite species (viruses, bacteria, helminths, protozoa or fungi) is commonplace. Most reports show co-infected humans to have worse health than those with single infections. However, we have little understanding of how co-infecting parasites interact within human hosts. We used data from over 300 published studies to construct a network that offers the first broad indications of how groups of co-infecting parasites tend to interact. The network had three l...

  7. WGCNA: an R package for weighted correlation network analysis.

    Science.gov (United States)

    Langfelder, Peter; Horvath, Steve

    2008-12-29

    Correlation networks are increasingly being used in bioinformatics applications. For example, weighted gene co-expression network analysis is a systems biology method for describing the correlation patterns among genes across microarray samples. Weighted correlation network analysis (WGCNA) can be used for finding clusters (modules) of highly correlated genes, for summarizing such clusters using the module eigengene or an intramodular hub gene, for relating modules to one another and to external sample traits (using eigengene network methodology), and for calculating module membership measures. Correlation networks facilitate network based gene screening methods that can be used to identify candidate biomarkers or therapeutic targets. These methods have been successfully applied in various biological contexts, e.g. cancer, mouse genetics, yeast genetics, and analysis of brain imaging data. While parts of the correlation network methodology have been described in separate publications, there is a need to provide a user-friendly, comprehensive, and consistent software implementation and an accompanying tutorial. The WGCNA R software package is a comprehensive collection of R functions for performing various aspects of weighted correlation network analysis. The package includes functions for network construction, module detection, gene selection, calculations of topological properties, data simulation, visualization, and interfacing with external software. Along with the R package we also present R software tutorials. While the methods development was motivated by gene expression data, the underlying data mining approach can be applied to a variety of different settings. The WGCNA package provides R functions for weighted correlation network analysis, e.g. co-expression network analysis of gene expression data. The R package along with its source code and additional material are freely available at http://www.genetics.ucla.edu/labs/horvath/CoexpressionNetwork/Rpackages/WGCNA.

  8. Believing and perceiving: authorship belief modulates sensory attenuation.

    Directory of Open Access Journals (Sweden)

    Andrea Desantis

    Full Text Available Sensory attenuation refers to the observation that self-generated stimuli are attenuated, both in terms of their phenomenology and their cortical response compared to the same stimuli when generated externally. Accordingly, it has been assumed that sensory attenuation might help individuals to determine whether a sensory event was caused by themselves or not. In the present study, we investigated whether this dependency is reciprocal, namely whether sensory attenuation is modulated by prior beliefs of authorship. Participants had to judge the loudness of auditory effects that they believed were either self-generated or triggered by another person. However, in reality, the sounds were always triggered by the participants' actions. Participants perceived the tones' loudness attenuated when they believed that the sounds were self-generated compared to when they believed that they were generated by another person. Sensory attenuation is considered to contribute to the emergence of people's belief of authorship. Our results suggest that sensory attenuation is also a consequence of prior belief about the causal link between an action and a sensory change in the environment.

  9. Bacterial networks and co-occurrence relationships in the lettuce root microbiota.

    Science.gov (United States)

    Cardinale, Massimiliano; Grube, Martin; Erlacher, Armin; Quehenberger, Julian; Berg, Gabriele

    2015-01-01

    Lettuce is one of the most common raw foods worldwide, but occasionally also involved in pathogen outbreaks. To understand the correlative structure of the bacterial community as a network, we studied root microbiota of eight ancient and modern Lactuca sativa cultivars and the wild ancestor Lactuca serriola by pyrosequencing of 16S rRNA gene amplicon libraries. The lettuce microbiota was dominated by Proteobacteria and Bacteriodetes, as well as abundant Chloroflexi and Actinobacteria. Cultivar specificity comprised 12.5% of the species. Diversity indices were not different between lettuce cultivar groups but higher than in L. serriola, suggesting that domestication lead to bacterial diversification in lettuce root system. Spearman correlations between operational taxonomic units (OTUs) showed that co-occurrence prevailed over co-exclusion, and complementary fluorescence in situ hybridization-confocal laser scanning microscopy (FISH-CLSM) analyses revealed that this pattern results from both potential interactions and habitat sharing. Predominant taxa, such as Pseudomonas, Flavobacterium and Sphingomonadaceae rather suggested interactions, even though these are not necessarily part of significant modules in the co-occurrence networks. Without any need for complex interactions, single organisms are able to invade into this microbial network and to colonize lettuce plants, a fact that can influence the susceptibility to pathogens. The approach to combine co-occurrence analysis and FISH-CLSM allows reliably reconstructing and interpreting microbial interaction networks. © 2014 Society for Applied Microbiology and John Wiley & Sons Ltd.

  10. Uncovering co-expression gene network modules regulating fruit acidity in diverse apples.

    Science.gov (United States)

    Bai, Yang; Dougherty, Laura; Cheng, Lailiang; Zhong, Gan-Yuan; Xu, Kenong

    2015-08-16

    Acidity is a major contributor to fruit quality. Several organic acids are present in apple fruit, but malic acid is predominant and determines fruit acidity. The trait is largely controlled by the Malic acid (Ma) locus, underpinning which Ma1 that putatively encodes a vacuolar aluminum-activated malate transporter1 (ALMT1)-like protein is a strong candidate gene. We hypothesize that fruit acidity is governed by a gene network in which Ma1 is key member. The goal of this study is to identify the gene network and the potential mechanisms through which the network operates. Guided by Ma1, we analyzed the transcriptomes of mature fruit of contrasting acidity from six apple accessions of genotype Ma_ (MaMa or Mama) and four of mama using RNA-seq and identified 1301 fruit acidity associated genes, among which 18 were most significant acidity genes (MSAGs). Network inferring using weighted gene co-expression network analysis (WGCNA) revealed five co-expression gene network modules of significant (P acidity. Overall, this study provides important insight into the Ma1-mediated gene network controlling acidity in mature apple fruit of diverse genetic background.

  11. Network statistics of genetically-driven gene co-expression modules in mouse crosses

    Directory of Open Access Journals (Sweden)

    Marie-Pier eScott-Boyer

    2013-12-01

    Full Text Available In biology, networks are used in different contexts as ways to represent relationships between entities, such as for instance interactions between genes, proteins or metabolites. Despite progress in the analysis of such networks and their potential to better understand the collective impact of genes on complex traits, one remaining challenge is to establish the biologic validity of gene co-expression networks and to determine what governs their organization. We used WGCNA to construct and analyze seven gene expression datasets from several tissues of mouse recombinant inbred strains (RIS. For six out of the 7 networks, we found that linkage to module QTLs (mQTLs could be established for 29.3% of gene co-expression modules detected in the several mouse RIS. For about 74.6% of such genetically-linked modules, the mQTL was on the same chromosome as the one contributing most genes to the module, with genes originating from that chromosome showing higher connectivity than other genes in the modules. Such modules (that we considered as genetically-driven had network statistic properties (density, centralization and heterogeneity that set them apart from other modules in the network. Altogether, a sizeable portion of gene co-expression modules detected in mouse RIS panels had genetic determinants as their main organizing principle. In addition to providing a biologic interpretation validation for these modules, these genetic determinants imparted on them particular properties that set them apart from other modules in the network, to the point that they can be predicted to a large extent on the basis of their network statistics.

  12. Effects of threshold on the topology of gene co-expression networks.

    Science.gov (United States)

    Couto, Cynthia Martins Villar; Comin, César Henrique; Costa, Luciano da Fontoura

    2017-09-26

    Several developments regarding the analysis of gene co-expression profiles using complex network theory have been reported recently. Such approaches usually start with the construction of an unweighted gene co-expression network, therefore requiring the selection of a suitable threshold defining which pairs of vertices will be connected. We aimed at addressing such an important problem by suggesting and comparing five different approaches for threshold selection. Each of the methods considers a respective biologically-motivated criterion for electing a potentially suitable threshold. A set of 21 microarray experiments from different biological groups was used to investigate the effect of applying the five proposed criteria to several biological situations. For each experiment, we used the Pearson correlation coefficient to measure the relationship between each gene pair, and the resulting weight matrices were thresholded considering several values, generating respective adjacency matrices (co-expression networks). Each of the five proposed criteria was then applied in order to select the respective threshold value. The effects of these thresholding approaches on the topology of the resulting networks were compared by using several measurements, and we verified that, depending on the database, the impact on the topological properties can be large. However, a group of databases was verified to be similarly affected by most of the considered criteria. Based on such results, it can be suggested that when the generated networks present similar measurements, the thresholding method can be chosen with greater freedom. If the generated networks are markedly different, the thresholding method that better suits the interests of each specific research study represents a reasonable choice.

  13. Formation of Molecular Networks: Tailored Quantum Boxes and Behavior of Adsorbed CO in Them

    Science.gov (United States)

    Wyrick, Jon; Sun, Dezheng; Kim, Dae-Ho; Cheng, Zhihai; Lu, Wenhao; Zhu, Yeming; Luo, Miaomiao; Kim, Yong Su; Rotenberg, Eli; Kim, Kwangmoo; Einstein, T. L.; Bartels, Ludwig

    2011-03-01

    We show that the behavior of CO adsorbed into the pores of large regular networks on Cu(111) is significantly affected by their nano-scale lateral confinement and that formation of the networks themselves is directed by the Shockley surface state. Saturation coverages of CO are found to exhibit persistent dislocation lines; at lower coverages their mobility increases. Individual CO within the pores titrate the surface state, providing crucial information for understanding formation of the network as a result of optimization of the number N of electrons bound within each pore. Determination of N is based on quinone-coverage-dependent UPS data and an analysis of states of particles in a pore-shaped box (verified by CO's titration); a wide range of possible pore shapes and sizes has been considered. Work at UCR supported by NSF CHE 07-49949; at UMD by NSF CHE 07-50334 & UMD NSF-MRSEC DMR 05-20471.

  14. Popular Authorship Reconfigured: Stephen King’s Authorial Personae from Print to Digital Environments

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    Despoina Feleki

    2014-04-01

    Full Text Available The convergence of literary practices with computer information technologies (ICTs has immensely affected writing processes and theories of authorship. This paper aims to foreground contemporary sociocultural conditions which have reconfigured authorship in relation to the materiality of the product through the example of Stephen King’s writing and marketing choices. An investigation of selected printed and digital works, including Misery, Lisey’s Story, Duma’s Key, and UR, showcases King’s concern for the future of authorship in the digital age and the position of the writer in the book and entertainment industries. This article seeks to trace the trajectory of the concept of the author who is seen moving from print to digital environments and being entangled in new forms of communication with the reader. In particular, King, who leaves control of the narrative story to experts in digital mediation, takes advantage of the new medium’s immediacy, comes closer to the recipients of his works, and manages to re-invent his authorial image while his name turns into a brand.

  15. Identification of networks of co-occurring, tumor-related DNA copy number changes using a genome-wide scoring approach.

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    Christiaan Klijn

    2010-01-01

    Full Text Available Tumorigenesis is a multi-step process in which normal cells transform into malignant tumors following the accumulation of genetic mutations that enable them to evade the growth control checkpoints that would normally suppress their growth or result in apoptosis. It is therefore important to identify those combinations of mutations that collaborate in cancer development and progression. DNA copy number alterations (CNAs are one of the ways in which cancer genes are deregulated in tumor cells. We hypothesized that synergistic interactions between cancer genes might be identified by looking for regions of co-occurring gain and/or loss. To this end we developed a scoring framework to separate truly co-occurring aberrations from passenger mutations and dominant single signals present in the data. The resulting regions of high co-occurrence can be investigated for between-region functional interactions. Analysis of high-resolution DNA copy number data from a panel of 95 hematological tumor cell lines correctly identified co-occurring recombinations at the T-cell receptor and immunoglobulin loci in T- and B-cell malignancies, respectively, showing that we can recover truly co-occurring genomic alterations. In addition, our analysis revealed networks of co-occurring genomic losses and gains that are enriched for cancer genes. These networks are also highly enriched for functional relationships between genes. We further examine sub-networks of these networks, core networks, which contain many known cancer genes. The core network for co-occurring DNA losses we find seems to be independent of the canonical cancer genes within the network. Our findings suggest that large-scale, low-intensity copy number alterations may be an important feature of cancer development or maintenance by affecting gene dosage of a large interconnected network of functionally related genes.

  16. Authorship in "College & Research Libraries" Revisited: Gender, Institutional Affiliation, Collaboration.

    Science.gov (United States)

    Terry, James L.

    1996-01-01

    Updates earlier studies on the characteristics of authorship of articles published in "College & Research Libraries", focusing on gender, institutional affiliation, and extent of collaboration. Results show representation by academic librarians and authors affiliated with library schools increased, collaboration predominated, and…

  17. Parametric optimization design for supercritical CO2 power cycle using genetic algorithm and artificial neural network

    International Nuclear Information System (INIS)

    Wang Jiangfeng; Sun Zhixin; Dai Yiping; Ma Shaolin

    2010-01-01

    Supercritical CO 2 power cycle shows a high potential to recover low-grade waste heat due to its better temperature glide matching between heat source and working fluid in the heat recovery vapor generator (HRVG). Parametric analysis and exergy analysis are conducted to examine the effects of thermodynamic parameters on the cycle performance and exergy destruction in each component. The thermodynamic parameters of the supercritical CO 2 power cycle is optimized with exergy efficiency as an objective function by means of genetic algorithm (GA) under the given waste heat condition. An artificial neural network (ANN) with the multi-layer feed-forward network type and back-propagation training is used to achieve parametric optimization design rapidly. It is shown that the key thermodynamic parameters, such as turbine inlet pressure, turbine inlet temperature and environment temperature have significant effects on the performance of the supercritical CO 2 power cycle and exergy destruction in each component. It is also shown that the optimum thermodynamic parameters of supercritical CO 2 power cycle can be predicted with good accuracy using artificial neural network under variable waste heat conditions.

  18. The Disputed Authorship of a Medieval Text: A New Solution to the Attribution Problem in the Case of Guillaume D’Angleterre

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    Maria Slautina

    2012-11-01

    Full Text Available This paper presents a case of disputed authorship concerning a literary medieval text, the Old French romance Guillaume d’Angleterre, and describes a new attempt to use the mathematical method of authorship attribution called the "method of pattern recognition”. After presenting an overview of previous approaches to the problem of the authorship of this text, I argue for the advantages of a statistical syntactic based method for authorship attribution of medieval texts. The method of pattern recognition consists in the identification of a domain of syntactic parameters and a measurement of the proximity or distance of texts as located in a multi-dimensional syntactic space. I find that the medieval text most likely belongs to Chrétien de Troyes, one of the most famous French authors of the twelfth century. I present for the first time an attempt to apply the method of pattern recognition to determine the authorship of a medieval text written in Old French.

  19. Developmental Coaching to Support the Transition to Self-authorship

    Science.gov (United States)

    Pappas, James P.; Jerman, Jerry; Coughlin, Carolyn

    2015-01-01

    Constructive-developmental theorists have made the case that adults require at least a self-authored meaning-making system to thrive in today's world. This chapter shows how coaches literate in adult development and body/mind theory and practice can be powerful partners to adults on the journey to self-authorship.

  20. Authentic Leadership: Practical Reflexivity, Self-Awareness, and Self-Authorship

    Science.gov (United States)

    Eriksen, Matthew

    2009-01-01

    This assignment provides a process to facilitate student engagement in practical reflexivity and self-authorship through which students develop the self-awareness that is required to be an authentic and effective leader. It facilitates the development of students' personal leadership principles, which help guide their decision making and actions,…

  1. Measuring the evolutionary rewiring of biological networks.

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    Chong Shou

    Full Text Available We have accumulated a large amount of biological network data and expect even more to come. Soon, we anticipate being able to compare many different biological networks as we commonly do for molecular sequences. It has long been believed that many of these networks change, or "rewire", at different rates. It is therefore important to develop a framework to quantify the differences between networks in a unified fashion. We developed such a formalism based on analogy to simple models of sequence evolution, and used it to conduct a systematic study of network rewiring on all the currently available biological networks. We found that, similar to sequences, biological networks show a decreased rate of change at large time divergences, because of saturation in potential substitutions. However, different types of biological networks consistently rewire at different rates. Using comparative genomics and proteomics data, we found a consistent ordering of the rewiring rates: transcription regulatory, phosphorylation regulatory, genetic interaction, miRNA regulatory, protein interaction, and metabolic pathway network, from fast to slow. This ordering was found in all comparisons we did of matched networks between organisms. To gain further intuition on network rewiring, we compared our observed rewirings with those obtained from simulation. We also investigated how readily our formalism could be mapped to other network contexts; in particular, we showed how it could be applied to analyze changes in a range of "commonplace" networks such as family trees, co-authorships and linux-kernel function dependencies.

  2. Disentangling the co-structure of multilayer interaction networks: degree distribution and module composition in two-layer bipartite networks.

    Science.gov (United States)

    Astegiano, Julia; Altermatt, Florian; Massol, François

    2017-11-13

    Species establish different interactions (e.g. antagonistic, mutualistic) with multiple species, forming multilayer ecological networks. Disentangling network co-structure in multilayer networks is crucial to predict how biodiversity loss may affect the persistence of multispecies assemblages. Existing methods to analyse multilayer networks often fail to consider network co-structure. We present a new method to evaluate the modular co-structure of multilayer networks through the assessment of species degree co-distribution and network module composition. We focus on modular structure because of its high prevalence among ecological networks. We apply our method to two Lepidoptera-plant networks, one describing caterpillar-plant herbivory interactions and one representing adult Lepidoptera nectaring on flowers, thereby possibly pollinating them. More than 50% of the species established either herbivory or visitation interactions, but not both. These species were over-represented among plants and lepidopterans, and were present in most modules in both networks. Similarity in module composition between networks was high but not different from random expectations. Our method clearly delineates the importance of interpreting multilayer module composition similarity in the light of the constraints imposed by network structure to predict the potential indirect effects of species loss through interconnected modular networks.

  3. Late Print Culture’s Social Media Revolution: Authorship, Collaboration and Copy Machines

    Directory of Open Access Journals (Sweden)

    Kate Eichhorn

    2013-05-01

    Full Text Available This article examines the impact of copy machines on late twentieth-century print cultures. Specifically, this article makes a case for “dry copying,” the method of print reproduction perfected by Xerox in the late 1950s, as a unique medium rather than a weak imitation of other printing methods. Following the claim that the widespread availability of copy machines in the late twentieth century represented the arrival of a new medium, this article further examines how understandings of authorship, established with print culture, came undone in the era of the copy machine. Finally, this paper makes a case for understanding copy machines as a form of “social media” that opened up opportunities for writers, readers and publishers to create, share, exchange and comment on texts and images in communities and networks of their own making in the decades preceding the development of the web.

  4. Boletin Geologico y Minero: two decades of scientific production: analysis and evolution (1989-2008); Boletn Geologico y Minero, dos decadas de produccion cientifica: analisis y evolucion (1989-2008)

    Energy Technology Data Exchange (ETDEWEB)

    Bermudez Molina, O.; Alonso Gallego, F.; Gutierrez Garate, M.; Lopez Blanco, G.; Barragan Sanabria, A.

    2010-07-01

    The scientific production published during the last 20 years in the Boletin Geologico y Minero is an indicator of scientific activity. The growth of scientific research can be determined by the number of papers published, their evolution over time, their authorship, institutions and geographical areas. A study of the Boletin provides a good idea of the degree of collaboration between researchers or institutions and the structure and dynamics of the groups who publish their results in it. This paper is based upon the selection and evaluation of relevant documents, and the description, analysis and assessment of scientific activity and those involved in it. The study applies biblio metric techniques to describe the content of the Boletin during the last two decades. It also relates, on the one hand, the different authorships (identifying informal research groups) and, on the other, the collaboration of the Institute with other entities throughout the world. Furthermore, the work analyses ten subject groups and the activity within these groups from year to year, as well as the levels of consistency among the volumes according to the parameters of authorship, the descriptors used in the indexing of documents and their subject groups. The basis of this study rests upon the 789 papers published for the dissemination of scientific knowledge in the pages of the Boletin Geologico y Minero. The study of the dynamics of the social network in terms of co-authorship provides evidence for the existence of active groups of authors and collaboration between informal research groups. (Author)

  5. Dynamic functional modules in co-expressed protein interaction networks of dilated cardiomyopathy

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    Oyang Yen-Jen

    2010-10-01

    Full Text Available Abstract Background Molecular networks represent the backbone of molecular activity within cells and provide opportunities for understanding the mechanism of diseases. While protein-protein interaction data constitute static network maps, integration of condition-specific co-expression information provides clues to the dynamic features of these networks. Dilated cardiomyopathy is a leading cause of heart failure. Although previous studies have identified putative biomarkers or therapeutic targets for heart failure, the underlying molecular mechanism of dilated cardiomyopathy remains unclear. Results We developed a network-based comparative analysis approach that integrates protein-protein interactions with gene expression profiles and biological function annotations to reveal dynamic functional modules under different biological states. We found that hub proteins in condition-specific co-expressed protein interaction networks tended to be differentially expressed between biological states. Applying this method to a cohort of heart failure patients, we identified two functional modules that significantly emerged from the interaction networks. The dynamics of these modules between normal and disease states further suggest a potential molecular model of dilated cardiomyopathy. Conclusions We propose a novel framework to analyze the interaction networks in different biological states. It successfully reveals network modules closely related to heart failure; more importantly, these network dynamics provide new insights into the cause of dilated cardiomyopathy. The revealed molecular modules might be used as potential drug targets and provide new directions for heart failure therapy.

  6. Non-Traditional Authorship Attribution Studies of William Shakespeare’s Canon: Some Caveats

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    Joseph Rudman

    2016-03-01

    Full Text Available The paper looks at the problems in conducting non-traditional authorship attribution studies on the canon of William Shakespeare. After a short introduction, the case is put forth that these studies are ‘scientific’ and must adhere to the tenets of the scientific method. By showing that a complete and valid experimental plan is necessary and pointing out the many and varied pitfalls (e.g., the text, the control groups, the treatment of errors, it becomes clear what a valid study of Shakespearean non-traditional authorship attribution demands. I then come to the conclusion that such a valid study is not attainable with the limits of present-day knowledge.

  7. Genetic architecture of wood properties based on association analysis and co-expression networks in white spruce.

    Science.gov (United States)

    Lamara, Mebarek; Raherison, Elie; Lenz, Patrick; Beaulieu, Jean; Bousquet, Jean; MacKay, John

    2016-04-01

    Association studies are widely utilized to analyze complex traits but their ability to disclose genetic architectures is often limited by statistical constraints, and functional insights are usually minimal in nonmodel organisms like forest trees. We developed an approach to integrate association mapping results with co-expression networks. We tested single nucleotide polymorphisms (SNPs) in 2652 candidate genes for statistical associations with wood density, stiffness, microfibril angle and ring width in a population of 1694 white spruce trees (Picea glauca). Associations mapping identified 229-292 genes per wood trait using a statistical significance level of P wood associated genes and several known MYB and NAC regulators were identified as network hubs. The network revealed a link between the gene PgNAC8, wood stiffness and microfibril angle, as well as considerable within-season variation for both genetic control of wood traits and gene expression. Trait associations were distributed throughout the network suggesting complex interactions and pleiotropic effects. Our findings indicate that integration of association mapping and co-expression networks enhances our understanding of complex wood traits. © 2015 The Authors. New Phytologist © 2015 New Phytologist Trust.

  8. In-silico gene co-expression network analysis in Paracoccidioides brasiliensis with reference to haloacid dehalogenase superfamily hydrolase gene

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    Raghunath Satpathy

    2015-01-01

    Full Text Available Context: Paracoccidioides brasiliensis, a dimorphic fungus is the causative agent of paracoccidioidomycosis, a disease globally affecting millions of people. The haloacid dehalogenase (HAD superfamily hydrolases enzyme in the fungi, in particular, is known to be responsible in the pathogenesis by adhering to the tissue. Hence, identification of novel drug targets is essential. Aims: In-silico based identification of co-expressed genes along with HAD superfamily hydrolase in P. brasiliensis during the morphogenesis from mycelium to yeast to identify possible genes as drug targets. Materials and Methods: In total, four datasets were retrieved from the NCBI-gene expression omnibus (GEO database, each containing 4340 genes, followed by gene filtration expression of the data set. Further co-expression (CE study was performed individually and then a combination these genes were visualized in the Cytoscape 2. 8.3. Statistical Analysis Used: Mean and standard deviation value of the HAD superfamily hydrolase gene was obtained from the expression data and this value was subsequently used for the CE calculation purpose by selecting specific correlation power and filtering threshold. Results: The 23 genes that were thus obtained are common with respect to the HAD superfamily hydrolase gene. A significant network was selected from the Cytoscape network visualization that contains total 7 genes out of which 5 genes, which do not have significant protein hits, obtained from gene annotation of the expressed sequence tags by BLAST X. For all the protein PSI-BLAST was performed against human genome to find the homology. Conclusions: The gene co-expression network was obtained with respect to HAD superfamily dehalogenase gene in P. Brasiliensis.

  9. Dissection of regulatory networks that are altered in disease via differential co-expression.

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    David Amar

    Full Text Available Comparing the gene-expression profiles of sick and healthy individuals can help in understanding disease. Such differential expression analysis is a well-established way to find gene sets whose expression is altered in the disease. Recent approaches to gene-expression analysis go a step further and seek differential co-expression patterns, wherein the level of co-expression of a set of genes differs markedly between disease and control samples. Such patterns can arise from a disease-related change in the regulatory mechanism governing that set of genes, and pinpoint dysfunctional regulatory networks. Here we present DICER, a new method for detecting differentially co-expressed gene sets using a novel probabilistic score for differential correlation. DICER goes beyond standard differential co-expression and detects pairs of modules showing differential co-expression. The expression profiles of genes within each module of the pair are correlated across all samples. The correlation between the two modules, however, differs markedly between the disease and normal samples. We show that DICER outperforms the state of the art in terms of significance and interpretability of the detected gene sets. Moreover, the gene sets discovered by DICER manifest regulation by disease-specific microRNA families. In a case study on Alzheimer's disease, DICER dissected biological processes and protein complexes into functional subunits that are differentially co-expressed, thereby revealing inner structures in disease regulatory networks.

  10. Large-scale structure of a network of co-occurring MeSH terms: statistical analysis of macroscopic properties.

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    Andrej Kastrin

    Full Text Available Concept associations can be represented by a network that consists of a set of nodes representing concepts and a set of edges representing their relationships. Complex networks exhibit some common topological features including small diameter, high degree of clustering, power-law degree distribution, and modularity. We investigated the topological properties of a network constructed from co-occurrences between MeSH descriptors in the MEDLINE database. We conducted the analysis on two networks, one constructed from all MeSH descriptors and another using only major descriptors. Network reduction was performed using the Pearson's chi-square test for independence. To characterize topological properties of the network we adopted some specific measures, including diameter, average path length, clustering coefficient, and degree distribution. For the full MeSH network the average path length was 1.95 with a diameter of three edges and clustering coefficient of 0.26. The Kolmogorov-Smirnov test rejects the power law as a plausible model for degree distribution. For the major MeSH network the average path length was 2.63 edges with a diameter of seven edges and clustering coefficient of 0.15. The Kolmogorov-Smirnov test failed to reject the power law as a plausible model. The power-law exponent was 5.07. In both networks it was evident that nodes with a lower degree exhibit higher clustering than those with a higher degree. After simulated attack, where we removed 10% of nodes with the highest degrees, the giant component of each of the two networks contains about 90% of all nodes. Because of small average path length and high degree of clustering the MeSH network is small-world. A power-law distribution is not a plausible model for the degree distribution. The network is highly modular, highly resistant to targeted and random attack and with minimal dissortativity.

  11. Multi-tissue analysis of co-expression networks by higher-order generalized singular value decomposition identifies functionally coherent transcriptional modules.

    Directory of Open Access Journals (Sweden)

    Xiaolin Xiao

    2014-01-01

    Full Text Available Recent high-throughput efforts such as ENCODE have generated a large body of genome-scale transcriptional data in multiple conditions (e.g., cell-types and disease states. Leveraging these data is especially important for network-based approaches to human disease, for instance to identify coherent transcriptional modules (subnetworks that can inform functional disease mechanisms and pathological pathways. Yet, genome-scale network analysis across conditions is significantly hampered by the paucity of robust and computationally-efficient methods. Building on the Higher-Order Generalized Singular Value Decomposition, we introduce a new algorithmic approach for efficient, parameter-free and reproducible identification of network-modules simultaneously across multiple conditions. Our method can accommodate weighted (and unweighted networks of any size and can similarly use co-expression or raw gene expression input data, without hinging upon the definition and stability of the correlation used to assess gene co-expression. In simulation studies, we demonstrated distinctive advantages of our method over existing methods, which was able to recover accurately both common and condition-specific network-modules without entailing ad-hoc input parameters as required by other approaches. We applied our method to genome-scale and multi-tissue transcriptomic datasets from rats (microarray-based and humans (mRNA-sequencing-based and identified several common and tissue-specific subnetworks with functional significance, which were not detected by other methods. In humans we recapitulated the crosstalk between cell-cycle progression and cell-extracellular matrix interactions processes in ventricular zones during neocortex expansion and further, we uncovered pathways related to development of later cognitive functions in the cortical plate of the developing brain which were previously unappreciated. Analyses of seven rat tissues identified a multi

  12. Multi-tissue analysis of co-expression networks by higher-order generalized singular value decomposition identifies functionally coherent transcriptional modules.

    Science.gov (United States)

    Xiao, Xiaolin; Moreno-Moral, Aida; Rotival, Maxime; Bottolo, Leonardo; Petretto, Enrico

    2014-01-01

    Recent high-throughput efforts such as ENCODE have generated a large body of genome-scale transcriptional data in multiple conditions (e.g., cell-types and disease states). Leveraging these data is especially important for network-based approaches to human disease, for instance to identify coherent transcriptional modules (subnetworks) that can inform functional disease mechanisms and pathological pathways. Yet, genome-scale network analysis across conditions is significantly hampered by the paucity of robust and computationally-efficient methods. Building on the Higher-Order Generalized Singular Value Decomposition, we introduce a new algorithmic approach for efficient, parameter-free and reproducible identification of network-modules simultaneously across multiple conditions. Our method can accommodate weighted (and unweighted) networks of any size and can similarly use co-expression or raw gene expression input data, without hinging upon the definition and stability of the correlation used to assess gene co-expression. In simulation studies, we demonstrated distinctive advantages of our method over existing methods, which was able to recover accurately both common and condition-specific network-modules without entailing ad-hoc input parameters as required by other approaches. We applied our method to genome-scale and multi-tissue transcriptomic datasets from rats (microarray-based) and humans (mRNA-sequencing-based) and identified several common and tissue-specific subnetworks with functional significance, which were not detected by other methods. In humans we recapitulated the crosstalk between cell-cycle progression and cell-extracellular matrix interactions processes in ventricular zones during neocortex expansion and further, we uncovered pathways related to development of later cognitive functions in the cortical plate of the developing brain which were previously unappreciated. Analyses of seven rat tissues identified a multi-tissue subnetwork of co

  13. Construction and analysis of the transcription factor-microRNA co-regulatory network response to Mycobacterium tuberculosis: a view from the blood.

    Science.gov (United States)

    Lin, Yan; Duan, Zipeng; Xu, Feng; Zhang, Jiayuan; Shulgina, Marina V; Li, Fan

    2017-01-01

    Mycobacterium tuberculosis ( Mtb ) infection has been regional outbreak, recently. The traditional focus on the patterns of "reductionism" which was associated with single molecular changes has been unable to meet the demand of early diagnosis and clinical application when current tuberculosis infection happened. In this study, we employed a systems biology approach to collect large microarray data sets including mRNAs and microRNAs (miRNAs) to identify the differentially expressed mRNAs and miRNAs in the whole blood of TB patients. The aim was to identify key genes associated with the immune response in the pathogenic process of tuberculosis by analyzing the co-regulatory network that was consisted of transcription factors and miRNAs as well as their target genes. The network along with their co-regulatory genes was analyzed utilizing Transcriptional Regulatory Element Database (TRED) and Database for Annotation, Visualization and Integrated Discovery (DAVID). We got 21 (19 up-regulated and 2 down-regulated) differentially expressed genes that were co-regulated by transcription factors and miRNAs. KEGG pathway enrichment analysis showed that the 21 differentially expressed genes were predominantly involved in Tuberculosis signaling pathway, which may play a major role in tuberculosis biological process. Quantitative real-time PCR was performed to verify the over expression of co-regulatory genes ( FCGR1A and CEBPB ). The genetic expression was correlated with clinicopathological characteristics in TB patients and inferences drawn. Our results suggest the TF-miRNA gene co-regulatory network may help us further understand the molecular mechanism of immune response to tuberculosis and provide us a new angle of future biomarker and therapeutic targets.

  14. Taxon abundance, diversity, co-occurrence and network analysis of the ruminal microbiota in response to dietary changes in dairy cows.

    Directory of Open Access Journals (Sweden)

    Ilma Tapio

    Full Text Available The ruminal microbiome, comprising large numbers of bacteria, ciliate protozoa, archaea and fungi, responds to diet and dietary additives in a complex way. The aim of this study was to investigate the benefits of increasing the depth of the community analysis in describing and explaining responses to dietary changes. Quantitative PCR, ssu rRNA amplicon based taxa composition, diversity and co-occurrence network analyses were applied to ruminal digesta samples obtained from four multiparous Nordic Red dairy cows fitted with rumen cannulae. The cows received diets with forage:concentrate ratio either 35:65 (diet H or 65:35 (L, supplemented or not with sunflower oil (SO (0 or 50 g/kg diet dry matter, supplied in a 4 × 4 Latin square design with a 2 × 2 factorial arrangement of treatments and four 35-day periods. Digesta samples were collected on days 22 and 24 and combined. QPCR provided a broad picture in which a large fall in the abundance of fungi was seen with SO in the H but not the L diet. Amplicon sequencing showed higher community diversity indices in L as compared to H diets and revealed diet specific taxa abundance changes, highlighting large differences in protozoal and fungal composition. Methanobrevibacter ruminantium and Mbb. gottschalkii dominated archaeal communities, and their abundance correlated negatively with each other. Co-occurrence network analysis provided evidence that no microbial domain played a more central role in network formation, that some minor-abundance taxa were at nodes of highest centrality, and that microbial interactions were diet specific. Networks added new dimensions to our understanding of the diet effect on rumen microbial community interactions.

  15. Longitudinal Gender Disparity in Female Urology Resident Primary Authorship at an American Urological Association Sectional Meeting.

    Science.gov (United States)

    Lin, Tony R; Kocher, Neil J; Klausner, Adam P; Raman, Jay D

    2017-12-01

    To further evaluate the academic representation of female urology residents in the United States, we reviewed abstracts from the Mid-Atlantic American Urological Association (MA-AUA) sectional meetings to determine if the recent increase in the number of female urology residents mirrored an increase in this group's abstract authorship. Full text abstracts from the MA-AUA meetings were analyzed from 2008 to 2014 excluding 1 joint section meeting. First-author gender was determined by querying publicly available institutional websites, social media platforms, and the U.S. News & World Report. First-author gender was indeterminable in 10 abstracts based on search criteria and these were excluded. Individual abstracts were broadly categorized based on keywords into 1 of several topics. Chi-square statistical tests examined the relationship between first-authorship gender, publication year, and abstract category. The number of female urology residents in the MA-AUA increased over the study period. A total of 484 abstracts were analyzed. Three hundred ninety-three abstracts (81%) included a male first-author, whereas 81 abstracts (17%) included a female first-author. Female first-authorship ranged from 13% to 25% annually. Comparison of male-to-female first-authorship was statistically significant in all years evaluated (P <.001). There was a statistically significant difference between male and female first-authorship in all topic categories (P <.01), except Education/Other (P = .56). Despite continued gains and increasing female representation in urology, these data highlight significantly fewer female first-authors at the regional Mid-Atlantic section meetings. Larger studies are necessary to identify contributing factors and further areas for improvement toward decreasing gender imbalances within the academic community. Copyright © 2017 Elsevier Inc. All rights reserved.

  16. Authorship, plagiarism and conflict of interest: views and practices from low/middle-income country health researchers

    Science.gov (United States)

    Young, Taryn; Garner, Paul

    2017-01-01

    Objectives To document low/middle-income country (LMIC) health researchers’ views about authorship, redundant publication, plagiarism and conflicts of interest and how common poor practice was in their institutions. Design We developed a questionnaire based on scenarios about authorship, redundant publication, plagiarism and conflicts of interest. We asked participants whether the described practices were acceptable and whether these behaviours were common at their institutions. We conducted in-depth interviews with respondents who agreed to be interviewed. Participants We invited 607 corresponding authors of Cochrane reviews working in LMICs. From the 583 emails delivered, we obtained 199 responses (34%). We carried out in-depth interviews with 15 respondents. Results Seventy-seven per cent reported that guest authorship occurred at their institution, 60% reported text recycling. For plagiarism, 12% of respondents reported that this occurred ‘occasionally’, and 24% ‘rarely’. Forty per cent indicated that their colleagues had not declared conflicts of interest in the past. Respondents generally recognised poor practice in scenarios but reported that they occurred at their institutions. Themes identified from in-depth interviews were (1) authorship rules are simple in theory, but not consistently applied; (2) academic status and power underpin behaviours; (3) institutions and culture fuel bad practices and (4) researchers are uncertain about what conflict of interests means and how this may influence research. Conclusions LMIC researchers report that guest authorship is widely accepted and common. While respondents report that plagiarism and undeclared conflicts of interest are unacceptable in practice, they appear common. Determinants of poor practice relate to academic status and power, fuelled by institutional norms and culture. PMID:29170291

  17. Analysis of Collaboration and Co-Citation Networks between Researchers Studying Violence Involving Women

    Science.gov (United States)

    Muñoz-Muñoz, Ana M.; Mirón-Valdivieso, M. Dolores

    2017-01-01

    Introduction: We analyse the collaboration and co-citation networks at the international level in scientific articles about violence against women. The aim is to identify who are writing about this subject, if they are women and/or men, who the most influential authors are and which institutions they belong to, and finally which authors are cited…

  18. Co-opetition and knowledge co-creation in Japanese supplier-networks : The case of Toyota

    NARCIS (Netherlands)

    Wilhelm, Miriam M.; Kohlbacher, Florian

    This article examines how knowledge co-creation takes place within the Toyota network. We extend the work of Dyer and Nobeoka, who contributed to the theory of network-level learning by showing how Toyota succeeded in 'creating and managing a high-performance knowledge-sharing network'. By examining

  19. Robustness of cluster synchronous patterns in small-world networks with inter-cluster co-competition balance

    International Nuclear Information System (INIS)

    Zhang, Jianbao; Ma, Zhongjun; Chen, Guanrong

    2014-01-01

    All edges in the classical Watts and Strogatz's small-world network model are unweighted and cooperative (positive). By introducing competitive (negative) inter-cluster edges and assigning edge weights to mimic more realistic networks, this paper develops a modified model which possesses co-competitive weighted couplings and cluster structures while maintaining the common small-world network properties of small average shortest path lengths and large clustering coefficients. Based on theoretical analysis, it is proved that the new model with inter-cluster co-competition balance has an important dynamical property of robust cluster synchronous pattern formation. More precisely, clusters will neither merge nor split regardless of adding or deleting nodes and edges, under the condition of inter-cluster co-competition balance. Numerical simulations demonstrate the robustness of the model against the increase of the coupling strength and several topological variations

  20. Robustness of cluster synchronous patterns in small-world networks with inter-cluster co-competition balance

    Science.gov (United States)

    Zhang, Jianbao; Ma, Zhongjun; Chen, Guanrong

    2014-06-01

    All edges in the classical Watts and Strogatz's small-world network model are unweighted and cooperative (positive). By introducing competitive (negative) inter-cluster edges and assigning edge weights to mimic more realistic networks, this paper develops a modified model which possesses co-competitive weighted couplings and cluster structures while maintaining the common small-world network properties of small average shortest path lengths and large clustering coefficients. Based on theoretical analysis, it is proved that the new model with inter-cluster co-competition balance has an important dynamical property of robust cluster synchronous pattern formation. More precisely, clusters will neither merge nor split regardless of adding or deleting nodes and edges, under the condition of inter-cluster co-competition balance. Numerical simulations demonstrate the robustness of the model against the increase of the coupling strength and several topological variations.

  1. Robustness of cluster synchronous patterns in small-world networks with inter-cluster co-competition balance

    Energy Technology Data Exchange (ETDEWEB)

    Zhang, Jianbao [School of Science, Hangzhou Dianzi University, Hangzhou 310018 (China); Ma, Zhongjun, E-mail: mzj1234402@163.com [School of Mathematics and Computing Science, Guilin University of Electronic Technology, Guilin 541004 (China); Chen, Guanrong [Department of Electronic Engineering, City University of Hong Kong, Kowloon, Hong Kong (China)

    2014-06-15

    All edges in the classical Watts and Strogatz's small-world network model are unweighted and cooperative (positive). By introducing competitive (negative) inter-cluster edges and assigning edge weights to mimic more realistic networks, this paper develops a modified model which possesses co-competitive weighted couplings and cluster structures while maintaining the common small-world network properties of small average shortest path lengths and large clustering coefficients. Based on theoretical analysis, it is proved that the new model with inter-cluster co-competition balance has an important dynamical property of robust cluster synchronous pattern formation. More precisely, clusters will neither merge nor split regardless of adding or deleting nodes and edges, under the condition of inter-cluster co-competition balance. Numerical simulations demonstrate the robustness of the model against the increase of the coupling strength and several topological variations.

  2. Transcriptional Regulatory Network Analysis of MYB Transcription Factor Family Genes in Rice

    Directory of Open Access Journals (Sweden)

    Shuchi eSmita

    2015-12-01

    Full Text Available MYB transcription factor (TF is one of the largest TF families and regulates defense responses to various stresses, hormone signaling as well as many metabolic and developmental processes in plants. Understanding these regulatory hierarchies of gene expression networks in response to developmental and environmental cues is a major challenge due to the complex interactions between the genetic elements. Correlation analyses are useful to unravel co-regulated gene pairs governing biological process as well as identification of new candidate hub genes in response to these complex processes. High throughput expression profiling data are highly useful for construction of co-expression networks. In the present study, we utilized transcriptome data for comprehensive regulatory network studies of MYB TFs by top down and guide gene approaches. More than 50% of OsMYBs were strongly correlated under fifty experimental conditions with 51 hub genes via top down approach. Further, clusters were identified using Markov Clustering (MCL. To maximize the clustering performance, parameter evaluation of the MCL inflation score (I was performed in terms of enriched GO categories by measuring F-score. Comparison of co-expressed cluster and clads analyzed from phylogenetic analysis signifies their evolutionarily conserved co-regulatory role. We utilized compendium of known interaction and biological role with Gene Ontology enrichment analysis to hypothesize function of coexpressed OsMYBs. In the other part, the transcriptional regulatory network analysis by guide gene approach revealed 40 putative targets of 26 OsMYB TF hubs with high correlation value utilizing 815 microarray data. The putative targets with MYB-binding cis-elements enrichment in their promoter region, functional co-occurrence as well as nuclear localization supports our finding. Specially, enrichment of MYB binding regions involved in drought-inducibility implying their regulatory role in drought

  3. Does the multi-authorship trend influence the quality of an article?

    Digital Repository Service at National Institute of Oceanography (India)

    Sahu, S.R.; Panda, K.C.

    (10):920–927, 2010). It may be necessitated by interdisciplinary research, the evolution of a discipline, or the intention of quality improvement. This article studies the relationship between the authorship and the quality of articles (publications in better impact...

  4. Authorship, plagiarism and conflict of interest: views and practices from low/middle-income country health researchers.

    Science.gov (United States)

    Rohwer, Anke; Young, Taryn; Wager, Elizabeth; Garner, Paul

    2017-11-22

    To document low/middle-income country (LMIC) health researchers' views about authorship, redundant publication, plagiarism and conflicts of interest and how common poor practice was in their institutions. We developed a questionnaire based on scenarios about authorship, redundant publication, plagiarism and conflicts of interest. We asked participants whether the described practices were acceptable and whether these behaviours were common at their institutions. We conducted in-depth interviews with respondents who agreed to be interviewed. We invited 607 corresponding authors of Cochrane reviews working in LMICs. From the 583 emails delivered, we obtained 199 responses (34%). We carried out in-depth interviews with 15 respondents. Seventy-seven per cent reported that guest authorship occurred at their institution, 60% reported text recycling. For plagiarism, 12% of respondents reported that this occurred 'occasionally', and 24% 'rarely'. Forty per cent indicated that their colleagues had not declared conflicts of interest in the past. Respondents generally recognised poor practice in scenarios but reported that they occurred at their institutions. Themes identified from in-depth interviews were (1) authorship rules are simple in theory, but not consistently applied; (2) academic status and power underpin behaviours; (3) institutions and culture fuel bad practices and (4) researchers are uncertain about what conflict of interests means and how this may influence research. LMIC researchers report that guest authorship is widely accepted and common. While respondents report that plagiarism and undeclared conflicts of interest are unacceptable in practice, they appear common. Determinants of poor practice relate to academic status and power, fuelled by institutional norms and culture. © Article author(s) (or their employer(s) unless otherwise stated in the text of the article) 2017. All rights reserved. No commercial use is permitted unless otherwise expressly granted.

  5. Identification of PEG-induced water stress responsive transcripts using co-expression network in Eucalyptus grandis.

    Science.gov (United States)

    Ghosh Dasgupta, Modhumita; Dharanishanthi, Veeramuthu

    2017-09-05

    Ecophysiological studies in Eucalyptus have shown that water is the principal factor limiting stem growth. Effect of water deficit conditions on physiological and biochemical parameters has been extensively reported in Eucalyptus. The present study was conducted to identify major polyethylene glycol induced water stress responsive transcripts in Eucalyptus grandis using gene co-expression network. A customized array representing 3359 water stress responsive genes was designed to document their expression in leaves of E. grandis cuttings subjected to -0.225MPa of PEG treatment. The differentially expressed transcripts were documented and significantly co-expressed transcripts were used for construction of network. The co-expression network was constructed with 915 nodes and 3454 edges with degree ranging from 2 to 45. Ninety four GO categories and 117 functional pathways were identified in the network. MCODE analysis generated 27 modules and module 6 with 479 nodes and 1005 edges was identified as the biologically relevant network. The major water responsive transcripts represented in the module included dehydrin, osmotin, LEA protein, expansin, arabinogalactans, heat shock proteins, major facilitator proteins, ARM repeat proteins, raffinose synthase, tonoplast intrinsic protein and transcription factors like DREB2A, ARF9, AGL24, UNE12, WLIM1 and MYB66, MYB70, MYB 55, MYB 16 and MYB 103. The coordinated analysis of gene expression patterns and coexpression networks developed in this study identified an array of transcripts that may regulate PEG induced water stress responses in E. grandis. Copyright © 2017 Elsevier B.V. All rights reserved.

  6. Multiple Authorship in Two English-Language Journals in Radiation Oncology.

    Science.gov (United States)

    Halperin, Edward C.; And Others

    1992-01-01

    A study of multiple authorship in 1,908 papers in the "International Journal of Radiation Oncology, Biology, and Physics" and "Radiotherapy and Oncology" from 1983-87 investigated patterns and trends in number of authors per article by journal, article type, country, author's institution, author gender, and order of listing of…

  7. Semantic Similarity versus Co-authorship Networks: A Detailed Comparison

    NARCIS (Netherlands)

    Paraschiv, Ionut Cristian; Dascalu, Mihai; Trausan-Matu, Stefan; Nistor, Nicolae; Montes de Oca, Ambar Murillo; McNamara, Danielle S.

    2017-01-01

    Whether interested in personal work, in learning about trending topics, or in finding the structure of a specific domain, individuals' work of staying up-to-date has become more and more difficult due to the increasing information overflow. ln our previous work our focus has been to create a

  8. NAP: The Network Analysis Profiler, a web tool for easier topological analysis and comparison of medium-scale biological networks.

    Science.gov (United States)

    Theodosiou, Theodosios; Efstathiou, Georgios; Papanikolaou, Nikolas; Kyrpides, Nikos C; Bagos, Pantelis G; Iliopoulos, Ioannis; Pavlopoulos, Georgios A

    2017-07-14

    Nowadays, due to the technological advances of high-throughput techniques, Systems Biology has seen a tremendous growth of data generation. With network analysis, looking at biological systems at a higher level in order to better understand a system, its topology and the relationships between its components is of a great importance. Gene expression, signal transduction, protein/chemical interactions, biomedical literature co-occurrences, are few of the examples captured in biological network representations where nodes represent certain bioentities and edges represent the connections between them. Today, many tools for network visualization and analysis are available. Nevertheless, most of them are standalone applications that often (i) burden users with computing and calculation time depending on the network's size and (ii) focus on handling, editing and exploring a network interactively. While such functionality is of great importance, limited efforts have been made towards the comparison of the topological analysis of multiple networks. Network Analysis Provider (NAP) is a comprehensive web tool to automate network profiling and intra/inter-network topology comparison. It is designed to bridge the gap between network analysis, statistics, graph theory and partially visualization in a user-friendly way. It is freely available and aims to become a very appealing tool for the broader community. It hosts a great plethora of topological analysis methods such as node and edge rankings. Few of its powerful characteristics are: its ability to enable easy profile comparisons across multiple networks, find their intersection and provide users with simplified, high quality plots of any of the offered topological characteristics against any other within the same network. It is written in R and Shiny, it is based on the igraph library and it is able to handle medium-scale weighted/unweighted, directed/undirected and bipartite graphs. NAP is available at http://bioinformatics.med.uoc.gr/NAP .

  9. Autoria em artigos científicos: os novos desafios Authorship for scientific papers: the new challenges

    Directory of Open Access Journals (Sweden)

    Carla Costa Garcia

    2010-12-01

    Full Text Available A disseminação da prática de coautoria no Brasil e na comunidade internacional tem sido acompanhada pelo aumento no registro de fraudes, manipulações e outros desvios ao definir a responsabilidade por um trabalho científico. Este artigo discorre sobre os critérios utilizados para atribuição da autoria, as razões para o crescimento dos índices de coautoria e os desafios para estabelecer a autoria em periódicos eletrônicos. Por meio de revisão bibliográfica e estudo de caso (a partir de levantamento de base de dados, aponta caminhos para evitar que "desvios de comportamento" quanto à atribuição de autoria abalem a credibilidade da ciência.The dissemination of the practice of collaborative authorship (coauthorship in Brazil and in the international scientific community has been accompanied by an increasing occurrence of frauds, manipulations and other deviations in the assignment of responsibility for a scientific paper. This article discusses the criteria for authorship attribution, the reasons for the growing indices of coauthorship and the challenges to determine authorship in electronic journals. Through literature review and case study (bibliographic search in scientific database, it shows ways to avoid that "misbehaviors" related to the authorship attribution affect the credibility of science.

  10. Adaptive co-evolution of strategies and network leading to optimal cooperation level in spatial prisoner's dilemma game

    International Nuclear Information System (INIS)

    Han-Shuang, Chen; Zhong-Huai, Hou; Hou-Wen, Xin; Ji-Qian, Zhang

    2010-01-01

    We study evolutionary prisoner's dilemma game on adaptive networks where a population of players co-evolves with their interaction networks. During the co-evolution process, interacted players with opposite strategies either rewire the link between them with probability p or update their strategies with probability 1 – p depending on their payoffs. Numerical simulation shows that the final network is either split into some disconnected communities whose players share the same strategy within each community or forms a single connected network in which all nodes are in the same strategy. Interestingly, the density of cooperators in the final state can be maximised in an intermediate range of p via the competition between time scale of the network dynamics and that of the node dynamics. Finally, the mean-field analysis helps to understand the results of numerical simulation. Our results may provide some insight into understanding the emergence of cooperation in the real situation where the individuals' behaviour and their relationship adaptively co-evolve. (general)

  11. The development of a network for community-based obesity prevention: the CO-OPS Collaboration

    Science.gov (United States)

    2011-01-01

    Background Community-based interventions are a promising approach and an important component of a comprehensive response to obesity. In this paper we describe the Collaboration of COmmunity-based Obesity Prevention Sites (CO-OPS Collaboration) in Australia as an example of a collaborative network to enhance the quality and quantity of obesity prevention action at the community level. The core aims of the CO-OPS Collaboration are to: identify and analyse the lessons learned from a range of community-based initiatives aimed at tackling obesity, and; to identify the elements that make community-based obesity prevention initiatives successful and share the knowledge gained with other communities. Methods Key activities of the collaboration to date have included the development of a set of Best Practice Principles and knowledge translation and exchange activities to promote the application (or use) of evidence, evaluation and analysis in practice. Results The establishment of the CO-OPS Collaboration is a significant step toward strengthening action in this area, by bringing together research, practice and policy expertise to promote best practice, high quality evaluation and knowledge translation and exchange. Future development of the network should include facilitation of further evidence generation and translation drawing from process, impact and outcome evaluation of existing community-based interventions. Conclusions The lessons presented in this paper may help other networks like CO-OPS as they emerge around the globe. It is important that networks integrate with each other and share the experience of creating these networks. PMID:21349185

  12. The network researchers' network: A social network analysis of the IMP Group 1985-2006

    DEFF Research Database (Denmark)

    Henneberg, Stephan C. M.; Ziang, Zhizhong; Naudé, Peter

    The Industrial Marketing and Purchasing (IMP) Group is a network of academic researchers working in the area of business-to-business marketing. The group meets every year to discuss and exchange ideas, with a conference having been held every year since 1984 (there was no meeting in 1987......). In this paper, based upon the papers presented at the 22 conferences held to date, we undertake a Social Network Analysis in order to examine the degree of co-publishing that has taken place between this group of researchers. We identify the different components in this database, and examine the large main...

  13. Currency co-movement and network correlation structure of foreign exchange market

    Science.gov (United States)

    Mai, Yong; Chen, Huan; Zou, Jun-Zhong; Li, Sai-Ping

    2018-02-01

    We study the correlations of exchange rate volatility in the global foreign exchange(FX) market based on complex network graphs. Correlation matrices (CM) and the theoretical information flow method (Infomap) are employed to analyze the modular structure of the global foreign exchange network. The analysis demonstrates that there exist currency modules in the network, which is consistent with the geographical nature of currencies. The European and the East Asian currency modules in the FX network are most significant. We introduce a measure of the impact of individual currency based on its partial correlations with other currencies. We further incorporate an impact elimination method to filter out the impact of core nodes and construct subnetworks after the removal of these core nodes. The result reveals that (i) the US Dollar has prominent global influence on the FX market while the Euro has great impact on European currencies; (ii) the East Asian currency module is more strongly correlated than the European currency module. The strong correlation is a result of the strong co-movement of currencies in the region. The co-movement of currencies is further used to study the formation of international monetary bloc and the result is in good agreement with the consideration based on international trade.

  14. Characterization of differentially expressed genes using high-dimensional co-expression networks

    DEFF Research Database (Denmark)

    Coelho Goncalves de Abreu, Gabriel; Labouriau, Rodrigo S.

    2010-01-01

    We present a technique to characterize differentially expressed genes in terms of their position in a high-dimensional co-expression network. The set-up of Gaussian graphical models is used to construct representations of the co-expression network in such a way that redundancy and the propagation...... that allow to make effective inference in problems with high degree of complexity (e.g. several thousands of genes) and small number of observations (e.g. 10-100) as typically occurs in high throughput gene expression studies. Taking advantage of the internal structure of decomposable graphical models, we...... construct a compact representation of the co-expression network that allows to identify the regions with high concentration of differentially expressed genes. It is argued that differentially expressed genes located in highly interconnected regions of the co-expression network are less informative than...

  15. Relationships Among Tweets Related to Radiation: Visualization Using Co-Occurring Networks.

    Science.gov (United States)

    Yagahara, Ayako; Hanai, Keiri; Hasegawa, Shin; Ogasawara, Katsuhiko

    2018-03-15

    After the Fukushima Daiichi nuclear accident on March 11, 2011, interest in, and fear of, radiation increased among citizens. When such accidents occur, appropriate risk communication must provided by the government. It is therefore necessary to understand the fears of citizens in the days after such accidents. This study aimed to identify the progression of people's concerns, specifically fear, from a study of radiation-related tweets in the days after the Fukushima Daiichi nuclear accident. From approximately 1.5 million tweets in Japanese including any of the phrases "radiation" (), "radioactivity" (), and "radioactive substance" () sent March 11-17, 2011, we extracted tweets that expressed fear. We then performed a morphological analysis on the extracted tweets. Citizens' fears were visualized by creating co-occurrence networks using co-occurrence degrees showing relationship strength. Moreover, we calculated the Jaccard coefficient, which is one of the co-occurrence indices for expressing the strength of the relationship between morphemes when creating networks. From the visualization of the co-occurrence networks, we found high citizen interest in "nuclear power plant" on March 11 and 12, "health" on March 12 and 13, "medium" on March 13 and 14, and "economy" on March 15. On March 16 and 17, citizens' interest changed to "lack of goods in the afflicted area." In each co-occurrence network, trending topics, citizens' fears, and opinions to the government were extracted. This study used Twitter to understand changes in the concerns of Japanese citizens during the week after the Fukushima Daiichi nuclear accident, with a focus specifically on citizens' fears. We found that immediately after the accident, the interest in the accident itself was high, and then interest shifted to concerns affecting life, such as health and economy, as the week progressed. Clarifying citizens' fears and the dissemination of information through mass media and social media can add to

  16. A comparative network analysis of eating disorder psychopathology and co-occurring depression and anxiety symptoms before and after treatment.

    Science.gov (United States)

    Smith, Kathryn E; Mason, Tyler B; Crosby, Ross D; Cao, Li; Leonard, Rachel C; Wetterneck, Chad T; Smith, Brad E R; Farrell, Nicholas R; Riemann, Bradley C; Wonderlich, Stephen A; Moessner, Markus

    2018-04-15

    Network analysis is an emerging approach in the study of psychopathology, yet few applications have been seen in eating disorders (EDs). Furthermore, little research exists regarding changes in network strength after interventions. Therefore the present study examined the network structures of ED and co-occurring depression and anxiety symptoms before and after treatment for EDs. Participants from residential or partial hospital ED treatment programs (N = 446) completed assessments upon admission and discharge. Networks were estimated using regularized Graphical Gaussian Models using 38 items from the Eating Disorders Examination-Questionnaire, Quick Inventory of Depressive Symptomatology, and State-Trait Anxiety Inventory. ED symptoms with high centrality indices included a desire to lose weight, guilt about eating, shape overvaluation, and wanting an empty stomach, while restlessness, self-esteem, lack of energy, and feeling overwhelmed bridged ED to depression and anxiety symptoms. Comparisons between admission and discharge networks indicated the global network strength did not change significantly, though symptom severity decreased. Participants with denser networks at admission evidenced less change in ED symptomatology during treatment. Findings suggest that symptoms related to shape and weight concerns and guilt are central ED symptoms, while physical symptoms, self-esteem, and feeling overwhelmed are links that may underlie comorbidities in EDs. Results provided some support for the validity of network approaches, in that admission networks conveyed prognostic information. However, the lack of correspondence between symptom reduction and change in network strength indicates that future research is needed to examine network dynamics in the context of intervention and relapse prevention.

  17. Trends in female authorship in research papers on eating disorders: 20-year bibliometric study.

    Science.gov (United States)

    Strand, Mattias; Bulik, Cynthia M

    2018-03-01

    There is a clear gender gap in scientific authorship. Although the proportions of female authors in medicine and psychiatry have increased over the past decades, women are still underrepresented. Aims To analyse authorship gender trends in eating disorder research. First and last author gender in research articles on eating disorders during the period 1997-2016 were assessed in eating disorder specialty journals, high-impact psychiatry journals and high-impact clinical psychology journals. The total number of papers on eating disorders increased substantially over the observation period, although a decrease was observed in high-impact psychiatry journals. Female authorship increased in both specialty journals and high-impact psychiatry journals. Authors were significantly less likely to be female in high-impact psychiatry and clinical psychology journals than in speciality journals. Eating disorder research has been increasingly allocated to specialty journals over the past 20 years. A consistent gender gap between specialty and high-impact journals exists. Declaration of interest C.M.B is a grant recipient from Shire Pharmaceuticals, Inc. and has participated as a member of their scientific advisory board. These positions are unrelated to the content of this article.

  18. Characterization of authorship speeches in classroom

    Directory of Open Access Journals (Sweden)

    Daniella de Almeida Santos

    2007-08-01

    Full Text Available Our paper intends to discuss how the teacher's speech can interfere in the construction of arguments on the part of the students, when they are involved with the task of solving an experimental problem in sciences classes. Thus, we wanted to understand how teacher and students relate to each other in a discursive movement for the senses structuring of the obtained experimental data. With that concern, our focus is in the processes of the speeches authorship, both students' and teachers', in the episodes in which the actors of the teaching and learning process organize their speeches, mediated by the experimental activity.

  19. Lattice Boltzmann simulation of CO2 reactive transport in network fractured media

    Science.gov (United States)

    Tian, Zhiwei; Wang, Junye

    2017-08-01

    Carbon dioxide (CO2) geological sequestration plays an important role in mitigating CO2 emissions for climate change. Understanding interactions of the injected CO2 with network fractures and hydrocarbons is key for optimizing and controlling CO2 geological sequestration and evaluating its risks to ground water. However, there is a well-known, difficult process in simulating the dynamic interaction of fracture-matrix, such as dynamic change of matrix porosity, unsaturated processes in rock matrix, and effect of rock mineral properties. In this paper, we develop an explicit model of the fracture-matrix interactions using multilayer bounce-back treatment as a first attempt to simulate CO2 reactive transport in network fractured media through coupling the Dardis's LBM porous model for a new interface treatment. Two kinds of typical fracture networks in porous media are simulated: straight cross network fractures and interleaving network fractures. The reaction rate and porosity distribution are illustrated and well-matched patterns are found. The species concentration distribution and evolution with time steps are also analyzed and compared with different transport properties. The results demonstrate the capability of this model to investigate the complex processes of CO2 geological injection and reactive transport in network fractured media, such as dynamic change of matrix porosity.

  20. Comprehensive analysis of coding-lncRNA gene co-expression network uncovers conserved functional lncRNAs in zebrafish.

    Science.gov (United States)

    Chen, Wen; Zhang, Xuan; Li, Jing; Huang, Shulan; Xiang, Shuanglin; Hu, Xiang; Liu, Changning

    2018-05-09

    Zebrafish is a full-developed model system for studying development processes and human disease. Recent studies of deep sequencing had discovered a large number of long non-coding RNAs (lncRNAs) in zebrafish. However, only few of them had been functionally characterized. Therefore, how to take advantage of the mature zebrafish system to deeply investigate the lncRNAs' function and conservation is really intriguing. We systematically collected and analyzed a series of zebrafish RNA-seq data, then combined them with resources from known database and literatures. As a result, we obtained by far the most complete dataset of zebrafish lncRNAs, containing 13,604 lncRNA genes (21,128 transcripts) in total. Based on that, a co-expression network upon zebrafish coding and lncRNA genes was constructed and analyzed, and used to predict the Gene Ontology (GO) and the KEGG annotation of lncRNA. Meanwhile, we made a conservation analysis on zebrafish lncRNA, identifying 1828 conserved zebrafish lncRNA genes (1890 transcripts) that have their putative mammalian orthologs. We also found that zebrafish lncRNAs play important roles in regulation of the development and function of nervous system; these conserved lncRNAs present a significant sequential and functional conservation, with their mammalian counterparts. By integrative data analysis and construction of coding-lncRNA gene co-expression network, we gained the most comprehensive dataset of zebrafish lncRNAs up to present, as well as their systematic annotations and comprehensive analyses on function and conservation. Our study provides a reliable zebrafish-based platform to deeply explore lncRNA function and mechanism, as well as the lncRNA commonality between zebrafish and human.

  1. In silico identification of miRNAs and their target genes and analysis of gene co-expression network in saffron (Crocus sativus L.) stigma

    Science.gov (United States)

    Zinati, Zahra; Shamloo-Dashtpagerdi, Roohollah; Behpouri, Ali

    2016-01-01

    As an aromatic and colorful plant of substantive taste, saffron (Crocus sativus L.) owes such properties of matter to growing class of the secondary metabolites derived from the carotenoids, apocarotenoids. Regarding the critical role of microRNAs in secondary metabolic synthesis and the limited number of identified miRNAs in C. sativus, on the other hand, one may see the point how the characterization of miRNAs along with the corresponding target genes in C. sativus might expand our perspectives on the roles of miRNAs in carotenoid/apocarotenoid biosynthetic pathway. A computational analysis was used to identify miRNAs and their targets using EST (Expressed Sequence Tag) library from mature saffron stigmas. Then, a gene co- expression network was constructed to identify genes which are potentially involved in carotenoid/apocarotenoid biosynthetic pathways. EST analysis led to the identification of two putative miRNAs (miR414 and miR837-5p) along with the corresponding stem- looped precursors. To our knowledge, this is the first report on miR414 and miR837-5p in C. sativus. Co-expression network analysis indicated that miR414 and miR837-5p may play roles in C. sativus metabolic pathways and led to identification of candidate genes including six transcription factors and one protein kinase probably involved in carotenoid/apocarotenoid biosynthetic pathway. Presence of transcription factors, miRNAs and protein kinase in the network indicated multiple layers of regulation in saffron stigma. The candidate genes from this study may help unraveling regulatory networks underlying the carotenoid/apocarotenoid biosynthesis in saffron and designing metabolic engineering for enhanced secondary metabolites. PMID:28261627

  2. Closing the Gender Gap: Increased Female Authorship in AJR and Radiology.

    Science.gov (United States)

    Yun, Eun Joo; Yoon, Dae Young; Kim, Bitna; Moon, Ji Yoon; Yoon, Soo Jeong; Hong, Su Jin; Baek, Sora

    2015-08-01

    The purpose of this study was to evaluate gender differences in the authorship of original research articles by radiologists in two major American radiology journals, AJR and Radiology. In a retrospective bibliometric analysis, all original articles published in AJR and Radiology during three 3-year periods (1991-1993, 2001-2003, and 2011-2013) were reviewed to determine the gender of the first and corresponding radiology authors. In addition, radiologic subspecialty and country of the authors were also abstracted from each article. The gender of the first and corresponding authors could be determined for 10,043 of 10,228 authors (98.2%) of original research in radiology. Between the periods 1991-1993 and 2011-2013, the percentage of female authors significantly increased: from 20.4% to 34.4%, respectively, among first authors (p < 0.0001); and from 18.0% to 28.7%, respectively, among corresponding authors (p < 0.0001). There was a significant correlation between the gender of the first and corresponding authors (p < 0.05). In the 2011-2013 period, the proportion of female authors was highest in breast (64.2%) and pediatric (48.2%) and lowest in vascular and interventional (18.5%) and cardiac (21.0%) subspecialties. The proportion of female authors was the highest in The Netherlands (47.3%), South Korea (37.9%), France (36.2%), and Italy (33.6%). There was a significant increase in the female authorship of original research articles in two major American radiology journals between the periods 1991-1993 and 2011-2013.

  3. Value Co-creation and Co-innovation: Linking Networked Organisations and Customer Communities

    Science.gov (United States)

    Romero, David; Molina, Arturo

    Strategic networks such as Collaborative Networked Organisations (CNOs) and Virtual Customer Communities (VCCs) show a high potential as drivers of value co-creation and collaborative innovation in today’s Networking Era. Both look at the network structures as a source of jointly value creation and open innovation through access to new skills, knowledge, markets and technologies by sharing risk and integrating complementary competencies. This collaborative endeavour has proven to be able to enhance the adaptability and flexibility of CNOs and VCCs value creating systems in order to react in response to external drivers such as collaborative (business) opportunities. This paper presents a reference framework for creating interface networks, also known as ‘experience-centric networks’, as enablers for linking networked organisations and customer communities in order to support the establishment of user-driven and collaborative innovation networks.

  4. Analysis of Research Collaboration between Universities and Private Companies in Spain Based on Joint Scientific Publications

    Science.gov (United States)

    Olmeda-Gómez, Carlos; Ovalle-Perandones, María Antonia; de Moya-Anegón, Félix

    2015-01-01

    Introduction: The article presents the results of a study on scientific collaboration between Spanish universities and private enterprise, measured in terms of the co-authorship of papers published in international journals. Method: Bibliometric analysis of papers published in journals listed in Scopus in 2003-2011. Indicators were calculated for…

  5. Codon based co-occurrence network motifs in human mitochondria

    Directory of Open Access Journals (Sweden)

    Pramod Shinde

    2017-10-01

    Full Text Available The nucleotide polymorphism in human mitochondrial genome (mtDNA tolled by codon position bias plays an indispensable role in human population dispersion and expansion. Herein, we constructed genome-wide nucleotide co-occurrence networks using a massive data consisting of five different geographical regions and around 3000 samples for each region. We developed a powerful network model to describe complex mitochondrial evolutionary patterns between codon and non-codon positions. It was interesting to report a different evolution of Asian genomes than those of the rest which is divulged by network motifs. We found evidence that mtDNA undergoes substantial amounts of adaptive evolution, a finding which was supported by a number of previous studies. The dominance of higher order motifs indicated the importance of long-range nucleotide co-occurrence in genomic diversity. Most notably, codon motifs apparently underpinned the preferences among codon positions for co-evolution which is probably highly biased during the origin of the genetic code. Our analyses manifested that codon position co-evolution is very well conserved across human sub-populations and independently maintained within human sub-populations implying the selective role of evolutionary processes on codon position co-evolution. Ergo, this study provided a framework to investigate cooperative genomic interactions which are critical in underlying complex mitochondrial evolution.

  6. Progression of Authorship of Scientific Articles in The Journal of Hand Surgery, 1985-2015.

    Science.gov (United States)

    Gu, Alex; Almeida, Neil; Cohen, Jordan S; Peck, Kathryn M; Merrell, Gregory A

    2017-04-01

    For scientists, authorship is academic currency. Authorship characteristics have been studied in a subset of the surgical and medical literature, but trends in the specialty of hand surgery have not yet been investigated. Specifically, a longitudinal analysis of number, educational training, sex, and geographical origin of authors has not been conducted. We explored the progression of authorship of scientific articles in a leading hand surgery journal. We recorded number of authors, number of references, degrees, and sex of the first and senior authors as well as geographical origin of the corresponding author in The Journal of Hand Surgery in 1985, 1995, 2005, and 2015. All original work was analyzed. A total of 892 articles were reviewed. The mean number of authors per article increased significantly from 2.6 in 1985 to 3.9 in 2015 and the number of references increased significantly from 13.7 in 1985 to 22.6 in 2015. There was a significant increase in the proportion of first authors with an MD/PhD, PhD, master's or bachelor's degree since 1985. During that same time period, a decrease in the proportion of first authors who held solely an MD was seen. There was a significant increase in proportion of the number of last authors with an MD/PhD, PhD or Master's degree in that same time period. There has been significant growth in publications originating from the "Far East" and "Other" regions, with 4.2% and 5.0% of publications, respectively, in 1985 having increased to 10.3% and 7.4% of publications, respectively, in 2015. Female first authorship significantly increased over the study period from 7.9% in 1985 to 22.1% of publications in 2015. There has been a significant increase in number of authors per article in The Journal of Hand Surgery. Similar to other studies, we noted shifts in the degrees most commonly held by authors, an increase in references per article, and a greater representation of international authors in the hand surgery. In addition, the

  7. The Strategic Impact of Corporate Responsibility and Criminal Networks on Value Co-Creation

    Directory of Open Access Journals (Sweden)

    Peter Zettinig

    2011-02-01

    Full Text Available This article is motivated by the increasing concern about the ever-declining security of pharmaceutical products due to the abundance of counterfeit network actors. We argue that if networks are effective mechanisms for criminal organizations to infiltrate into any value chain, then networks should also work for responsible businesses in their quests to counter this phenomenon of value destruction, which is ultimately detrimental to the value co-creation process. Thus, this article demonstrates a nuanced understanding of the strategic impact of corporate responsibility of actors in networks on value co-creation. The current discourse on value co-creation in business networks is structured in such a way that it precludes its inherent corporate responsibility component even though they are not mutually exclusive. Moreover, research on value co-creation aimed at the proactive and responsible defence of a network substance via value co-protection has been mostly scant. We propose a model of value-optimization through value co-protection and ethical responsibility. This way of theorizing has several implications for both policy making and managerial decision making in the pharmaceutical industry and beyond.

  8. Credit where credit's due: accounting for co-authorship in citation counts.

    Science.gov (United States)

    Tol, Richard S J

    2011-10-01

    I propose a new method (Pareto weights) to objectively attribute citations to co-authors. Previous methods either profess ignorance about the seniority of co-authors (egalitarian weights) or are based in an ad hoc way on the order of authors (rank weights). Pareto weights are based on the respective citation records of the co-authors. Pareto weights are proportional to the probability of observing the number of citations obtained. Assuming a Pareto distribution, such weights can be computed with a simple, closed-form equation but require a few iterations and data on a scholar, her co-authors, and her co-authors' co-authors. The use of Pareto weights is illustrated with a group of prominent economists. In this case, Pareto weights are very different from rank weights. Pareto weights are more similar to egalitarian weights but can deviate up to a quarter in either direction (for reasons that are intuitive).

  9. Supra-molecular networks for CO2 capture

    Science.gov (United States)

    Sadowski, Jerzy; Kestell, John

    Utilizing capabilities of low-energy electron microscopy (LEEM) for non-destructive interrogation of the real-time molecular self-assembly, we have investigated supramolecular systems based on carboxylic acid-metal complexes, such as trimesic and mellitic acid, doped with transition metals. Such 2D networks can act as host systems for transition-metal phthalocyanines (MPc; M = Fe, Ti, Sc). The electrostatic interactions of CO2 molecules with transition metal ions can be tuned by controlling the type of TM ion and the size of the pore in the host network. We further applied infrared reflection-absorption spectroscopy (IRRAS) to determine of the molecular orientation of the functional groups and the whole molecule in the 2D monolayers of carboxylic acid. The kinetics and mechanism of the CO2 adsorption/desorption on the 2D molecular network, with and without the TM ion doping, have been also investigated. This research used resources of the Center for Functional Nanomaterials, which is the U.S. DOE Office of Science User Facility, at Brookhaven National Laboratory under Contract No. DE-SC0012704.

  10. One or Many? Tensions with Authorship and Evaluation in Community Engagement Writing

    Science.gov (United States)

    Taggart, Amy Rupiper

    2007-01-01

    This article illustrates the sometimes unproductive tensions between community engagement goals in teaching writing and academic trends and institutional structures that influence grading practices and the language of authorship. To broaden instructors' understandings of possibilities for the relatively peaceful coexistence of individual and…

  11. Egocentric Social Network Analysis of Pathological Gambling

    Science.gov (United States)

    Meisel, Matthew K.; Clifton, Allan D.; MacKillop, James; Miller, Joshua D.; Campbell, W. Keith; Goodie, Adam S.

    2012-01-01

    Aims To apply social network analysis (SNA) to investigate whether frequency and severity of gambling problems were associated with different network characteristics among friends, family, and co-workers. is an innovative way to look at relationships among individuals; the current study was the first to our knowledge to apply SNA to gambling behaviors. Design Egocentric social network analysis was used to formally characterize the relationships between social network characteristics and gambling pathology. Setting Laboratory-based questionnaire and interview administration. Participants Forty frequent gamblers (22 non-pathological gamblers, 18 pathological gamblers) were recruited from the community. Findings The SNA revealed significant social network compositional differences between the two groups: pathological gamblers (PGs) had more gamblers, smokers, and drinkers in their social networks than did nonpathological gamblers (NPGs). PGs had more individuals in their network with whom they personally gambled, smoked, and drank with than those with who were NPG. Network ties were closer to individuals in their networks who gambled, smoked, and drank more frequently. Associations between gambling severity and structural network characteristics were not significant. Conclusions Pathological gambling is associated with compositional but not structural differences in social networks. Pathological gamblers differ from non-pathological gamblers in the number of gamblers, smokers, and drinkers in their social networks. Homophily within the networks also indicates that gamblers tend to be closer with other gamblers. This homophily may serve to reinforce addictive behaviors, and may suggest avenues for future study or intervention. PMID:23072641

  12. Egocentric social network analysis of pathological gambling.

    Science.gov (United States)

    Meisel, Matthew K; Clifton, Allan D; Mackillop, James; Miller, Joshua D; Campbell, W Keith; Goodie, Adam S

    2013-03-01

    To apply social network analysis (SNA) to investigate whether frequency and severity of gambling problems were associated with different network characteristics among friends, family and co-workers is an innovative way to look at relationships among individuals; the current study was the first, to our knowledge, to apply SNA to gambling behaviors. Egocentric social network analysis was used to characterize formally the relationships between social network characteristics and gambling pathology. Laboratory-based questionnaire and interview administration. Forty frequent gamblers (22 non-pathological gamblers, 18 pathological gamblers) were recruited from the community. The SNA revealed significant social network compositional differences between the two groups: pathological gamblers (PGs) had more gamblers, smokers and drinkers in their social networks than did non-pathological gamblers (NPGs). PGs had more individuals in their network with whom they personally gambled, smoked and drank than those with who were NPG. Network ties were closer to individuals in their networks who gambled, smoked and drank more frequently. Associations between gambling severity and structural network characteristics were not significant. Pathological gambling is associated with compositional but not structural differences in social networks. Pathological gamblers differ from non-pathological gamblers in the number of gamblers, smokers and drinkers in their social networks. Homophily within the networks also indicates that gamblers tend to be closer with other gamblers. This homophily may serve to reinforce addictive behaviors, and may suggest avenues for future study or intervention. © 2012 The Authors, Addiction © 2012 Society for the Study of Addiction.

  13. Inequalities in global health inequalities research: A 50-year bibliometric analysis (1966-2015)

    Science.gov (United States)

    Pericàs, Juan M.; Benach, Joan

    2018-01-01

    Background Increasing evidence shows that health inequalities exist between and within countries, and emphasis has been placed on strengthening the production and use of the global health inequalities research, so as to improve capacities to act. Yet, a comprehensive overview of this evidence base is still needed, to determine what is known about the global and historical scientific production on health inequalities to date, how is it distributed in terms of country income groups and world regions, how has it changed over time, and what international collaboration dynamics exist. Methods A comprehensive bibliometric analysis of the global scientific production on health inequalities, from 1966 to 2015, was conducted using Scopus database. The historical and global evolution of the study of health inequalities was considered, and through joinpoint regression analysis and visualisation network maps, the preceding questions were examined. Findings 159 countries (via authorship affiliation) contributed to this scientific production, three times as many countries than previously found. Scientific output on health inequalities has exponentially grown over the last five decades, with several marked shift points, and a visible country-income group affiliation gradient in the initiation and consistent publication frequency. Higher income countries, especially Anglo-Saxon and European countries, disproportionately dominate first and co-authorship, and are at the core of the global collaborative research networks, with the Global South on the periphery. However, several country anomalies exist that suggest that the causes of these research inequalities, and potential underlying dependencies, run deeper than simply differences in country income and language. Conclusions Whilst the global evidence base has expanded, Global North-South research gaps exist, persist and, in some cases, are widening. Greater understanding of the structural determinants of these research

  14. An additional k-means clustering step improves the biological features of WGCNA gene co-expression networks.

    Science.gov (United States)

    Botía, Juan A; Vandrovcova, Jana; Forabosco, Paola; Guelfi, Sebastian; D'Sa, Karishma; Hardy, John; Lewis, Cathryn M; Ryten, Mina; Weale, Michael E

    2017-04-12

    Weighted Gene Co-expression Network Analysis (WGCNA) is a widely used R software package for the generation of gene co-expression networks (GCN). WGCNA generates both a GCN and a derived partitioning of clusters of genes (modules). We propose k-means clustering as an additional processing step to conventional WGCNA, which we have implemented in the R package km2gcn (k-means to gene co-expression network, https://github.com/juanbot/km2gcn ). We assessed our method on networks created from UKBEC data (10 different human brain tissues), on networks created from GTEx data (42 human tissues, including 13 brain tissues), and on simulated networks derived from GTEx data. We observed substantially improved module properties, including: (1) few or zero misplaced genes; (2) increased counts of replicable clusters in alternate tissues (x3.1 on average); (3) improved enrichment of Gene Ontology terms (seen in 48/52 GCNs) (4) improved cell type enrichment signals (seen in 21/23 brain GCNs); and (5) more accurate partitions in simulated data according to a range of similarity indices. The results obtained from our investigations indicate that our k-means method, applied as an adjunct to standard WGCNA, results in better network partitions. These improved partitions enable more fruitful downstream analyses, as gene modules are more biologically meaningful.

  15. Quantitative Study of the Geographical Distribution of the Authorship of High-Energy Physics Journals

    CERN Document Server

    Krause, Jan; Mele, S

    2007-01-01

    The recent debate on Open Access publishing in High-Energy Physics has exposed the problem of assessing the scienti c production of every country where scholars are active in this discipline. This assessment is complicated by the highly-collaborative cross-border tradition of High-Energy Physics research. We present the results of a quantitative study of the geographical distribution of authors of High-Energy Physics articles, which takes into account cross-border co-authorship by attributing articles to countries on a pro-rata basis. Aggregated data on the share of scienti c results published by each country are presented together with a breakdown for the most popular journals in the eld, and a separation for articles by small groups or large collaborations. Collaborative patterns across large geographic areas are also investigated. Finally, the High-Energy Physics production of each country is compared with some economic indicators.

  16. Authorship attribution and author profiling of Lithuanian literary texts

    OpenAIRE

    Kapočiūtė-Dzikienė, Jurgita; Utka, Andrius; Šarkutė, Ligita

    2015-01-01

    In this work we are solving authorship attribution and author profiling tasks (by focusing on the age and gender dimensions) for the Lithuanian language. This paper reports the first results on literary texts, which we compared to the results, previously obtained with different functional styles and language types (i.e., parliamentary transcripts and forum posts). Using the Naïve Bayes Multinomial and Support Vector Machine methods we investigated an impact of...

  17. Research Quality, Fairness, and Authorship Order

    DEFF Research Database (Denmark)

    Ackerman, Margareta; Branzei, Simina

    2012-01-01

    of their last names, implying that all contributed equally, and by contribution, where authors are listed in decreasing order of their contribution to the paper. We perform a game theoretic analysis of the impact of author ordering schemes, uncovering two considerable advantages of alphabetical ordering......The order in which authors are listed on an academic paper determines the credit that each receives on a co-authored publication, influencing hiring, tenure and promotions. Two of the prevalent author ordering schemes are alphabetical, which involves listing authors in lexicographical order......: it leads to improved research quality, and it is the more fair of the two approaches in the worst case. On the other hand, contribution-based ordering results in a denser collaboration network and a greater number of publications than is achieved using alphabetical author ordering. Furthermore, authors can...

  18. Morphology-controllable synthesis of 3D CoNiO_2 nano-networks as a high-performance positive electrode material for supercapacitors

    International Nuclear Information System (INIS)

    Zhang, Jijun; Chen, Zexiang; Wang, Yan; Li, Hai

    2016-01-01

    Here, we report a novel three-dimensional (3D) assembly of CoNiO_2 nanowire networks using a facile and scalable hydrothermal method followed by an annealing process for supercapacitor applications. The X-ray diffraction (XRD) results revealed the formation of highly-crystalline CoNiO_2 nano-networks. Scanning electron microscope (SEM) analysis showed the formation of a 3D interconnected network of CoNiO_2 nanowires during the synthesis. In addition, a formation mechanism for 3D CoNiO_2 nano-networks was proposed. Electrochemical analysis showed a typical pseudocapacitive behavior for the CoNiO_2 nanowire networks. The as-prepared CoNiO_2 electrode exhibited a high specific capacitance of 1462 F g"−"1 (45.32 F cm"−"2) at a current density of 1 A g"−"1 (31 mA cm"−"2) and an excellent rate capability of 1000 F g"−"1 (31 F cm"−"2) at 32 A g"−"1 (992 mA cm"−"2). Moreover, a good cycle stability was achieved at 4 A g"−"1 with no degradation over 800 cycles, indicating the stable 3D structure of CoNiO_2 after the redox reactions. The high rate capability and the good cycle stability indicated that the as-prepared 3D CoNiO_2 electrode could satisfy the needs of supercapacitors with both high power and energy densities. - Highlights: • A three-dimensional (3D) assembly of CoNiO_2 nanowire networks was prepared. • Sodium-p-styrenesulfonate (PSS) plays a key role in forming the structure. • The as-prepared 3D CoNiO_2 electrode exhibits high power and energy densities. • The proposed method is easy to provide an industrial mass production. • The method can be used to fabricate different morphologies of nanomaterials.

  19. Part II: Should the h-index be modified? An analysis of the m-quotient, contemporary h-index, authorship value, and impact factor.

    Science.gov (United States)

    Khan, Nickalus R; Thompson, Clinton J; Taylor, Douglas R; Gabrick, Kyle S; Choudhri, Asim F; Boop, Frederick R; Klimo, Paul

    2013-12-01

    The widely accepted h-index depends on the citation analysis source and does not consider the authorship position, the journal's impact factor (IF), or the age of the paper or author. We investigated these factors in citation statistics of academic neurosurgeons. An uncorrected h-index and the m-quotient, which corrects for career length, were calculated by the use of Scopus and Google Scholar. In a subset of neurosurgeons, we computed the contemporary h-index (hc), which accounts for the age of the publications; the authorship value (AV), weighted by author position; and the journal IF. An "overall' average for AV and IF including most of an author's publications and an average for publications comprising the h-index ("h-index core") were calculated. When we used Google Scholar, the mean h-index was significantly greater than that calculated when we used Scopus (P = 0.0030). m-quotient and hc-index increased with academic rank, with an m-quotient >1 achieved by 69% of chairmen and 48% of professors. The effect of AV was greatest on the greater h-indices. The average IF for the h-index core was greater than the overall IF, which did not correlate with academic rank. Few neurosurgeons consistently publish in high-impact journals. Google Scholar tends to inflate the h-index. The m-quotient and hc-index allow comparisons of researchers across time. Although average journal IF did not differ significantly among neurosurgeons academic ranks, it should be noted for individuals who consistently publish in high-impact journals. We recommend the creation of individual bibliometric profiles to better compare the academic productivity of neurosurgeons. Copyright © 2013 Elsevier Inc. All rights reserved.

  20. Co-evolution of social networks and continuous actor attributes

    NARCIS (Netherlands)

    Niezink, Nynke M.D.; Snijders, Tom A.B.

    2017-01-01

    Social networks and the attributes of the actors in these networks are not static; they may develop interdependently over time. The stochastic actor-oriented model allows for statistical inference on the mechanisms driving this co-evolution process. In earlier versions of this model, dynamic actor

  1. The normalization of co-authorship networks in the bibliometric evaluation: the government stimulation programs of China and Korea

    NARCIS (Netherlands)

    Park, H.W.; Yoon, J.; Leydesdorff, L.

    2016-01-01

    Using co-authored publications between China and Korea in Web of Science (WoS) during the one-year period of 2014, we evaluate the government stimulation program for collaboration between China and Korea. In particular, we apply dual approaches, full integer versus fractional counting, to

  2. Genetic Network Inference: From Co-Expression Clustering to Reverse Engineering

    Science.gov (United States)

    Dhaeseleer, Patrik; Liang, Shoudan; Somogyi, Roland

    2000-01-01

    Advances in molecular biological, analytical, and computational technologies are enabling us to systematically investigate the complex molecular processes underlying biological systems. In particular, using high-throughput gene expression assays, we are able to measure the output of the gene regulatory network. We aim here to review datamining and modeling approaches for conceptualizing and unraveling the functional relationships implicit in these datasets. Clustering of co-expression profiles allows us to infer shared regulatory inputs and functional pathways. We discuss various aspects of clustering, ranging from distance measures to clustering algorithms and multiple-duster memberships. More advanced analysis aims to infer causal connections between genes directly, i.e., who is regulating whom and how. We discuss several approaches to the problem of reverse engineering of genetic networks, from discrete Boolean networks, to continuous linear and non-linear models. We conclude that the combination of predictive modeling with systematic experimental verification will be required to gain a deeper insight into living organisms, therapeutic targeting, and bioengineering.

  3. Redes sociales y conocimiento médico. Un estudio a través de las co-autorías en la publicación “Archivo Médico de Camaguey” Social networks and medical knowledge. A study through co-athouries in “Archivo Médico de Camaguey”

    Directory of Open Access Journals (Sweden)

    Rosa Luisa Aguirre del Busto

    2007-12-01

    Full Text Available Las redes sociales asociadas al conocimiento resultan de interés tanto a los estudios en Ciencia Tecnología y Sociedad, como al desenvolvimiento del pensamiento de la complejidad que se desarrolla en el país. Su análisis explica la naturaleza social de la producción científica y la existencia del capital social, cuyas características se vinculan con la satisfacción y resolución de las necesidades sociales dentro de la población cubana. Se muestra una red, conformada en torno a la Publicación Archivo Médico de Camagüey, durante los años 2003, 2004 y dos bimestres del 2005 sobre el desenvolvimiento de las co autorías dentro de ella. Delineando en qué forma los investigadores se relacionaron entre sí, para valorar algunos de sus resultados. Se describen, los grupos esenciales de investigación y sus principales fortalezas. Constituye una herramienta de trabajo, al exponer los cambios que están ocurriendo en torno a la Universidad Médica CamagüeyanaThe social networks associated to human knowledge are useful to the studies in Science Technology and Society. Their analysis explains the social nature of the scientific production and the existence of social resources, which link the satisfaction and resolution of the social necessities inside the Cuban population. The characteristics of this networks conformed in Archivo Médico de Camagüey publication on the development of co authorship from 2003 to 2005 were presented in this article. The researchers were related to each other in this work to value in which way they function together and analyze some of their results. The essential groups of investigation and their main strengths were also described. It constitutes a work tool for further research works, to considering the changes that are happening about the scientific knowledge production in Camagüey University of Medicine

  4. Co-creation and Co-innovation in a Collaborative Networked Environment

    Science.gov (United States)

    Klen, Edmilson Rampazzo

    Leveraged by the advances in communication and information Technologies, producers and consumers are developing a new behavior. Together with the new emerging collaborative manifestations this behavior may directly impact the way products are developed. This powerful combination indicates that consumers will be involved in a very early stage in product development processes supporting even more the creation and innovation of products. This new way of collaboration gives rise to a new collaborative networked environment based on co-creation and co-innovation. This work will present some evolutionary steps that point to the development of this environment where prosumer communities and virtual organizations interact and collaborate.

  5. Interactive network configuration maintains bacterioplankton community structure under elevated CO2 in a eutrophic coastal mesocosm experiment

    Science.gov (United States)

    Lin, Xin; Huang, Ruiping; Li, Yan; Li, Futian; Wu, Yaping; Hutchins, David A.; Dai, Minhan; Gao, Kunshan

    2018-01-01

    There is increasing concern about the effects of ocean acidification on marine biogeochemical and ecological processes and the organisms that drive them, including marine bacteria. Here, we examine the effects of elevated CO2 on the bacterioplankton community during a mesocosm experiment using an artificial phytoplankton community in subtropical, eutrophic coastal waters of Xiamen, southern China. Through sequencing the bacterial 16S rRNA gene V3-V4 region, we found that the bacterioplankton community in this high-nutrient coastal environment was relatively resilient to changes in seawater carbonate chemistry. Based on comparative ecological network analysis, we found that elevated CO2 hardly altered the network structure of high-abundance bacterioplankton taxa but appeared to reassemble the community network of low abundance taxa. This led to relatively high resilience of the whole bacterioplankton community to the elevated CO2 level and associated chemical changes. We also observed that the Flavobacteria group, which plays an important role in the microbial carbon pump, showed higher relative abundance under the elevated CO2 condition during the early stage of the phytoplankton bloom in the mesocosms. Our results provide new insights into how elevated CO2 may influence bacterioplankton community structure.

  6. A Mobile Sensor Network to Map CO2 in Urban Environments

    Science.gov (United States)

    Lee, J.; Christen, A.; Nesic, Z.; Ketler, R.

    2014-12-01

    Globally, an estimated 80% of all fuel-based CO2 emissions into the atmosphere are attributable to cities, but there is still a lack of tools to map, visualize and monitor emissions to the scales at which emissions reduction strategies can be implemented - the local and urban scale. Mobile CO2 sensors, such as those attached to taxis and other existing mobile platforms, may be a promising way to observe and map CO2 mixing ratios across heterogenous urban environments with a limited number of sensors. Emerging modular open source technologies, and inexpensive compact sensor components not only enable rapid prototyping and replication, but also are allowing for the miniaturization and mobilization of traditionally fixed sensor networks. We aim to optimize the methods and technologies for monitoring CO2 in cities using a network of CO2 sensors deployable on vehicles and bikes. Our sensor technology is contained in a compact weather-proof case (35.8cm x 27.8cm x 11.8cm), powered independently by battery or by car, and includes the Li-Cor Li-820 infrared gas analyzer (Licor Inc, lincoln, NB, USA), Arduino Mega microcontroller (Arduino CC, Italy) and Adafruit GPS (Adafruit Technologies, NY, USA), and digital air temperature thermometer which measure CO2 mixing ratios (ppm), geolocation and speed, pressure and temperature, respectively at 1-second intervals. With the deployment of our sensor technology, we will determine if such a semi-autonomous mobile approach to monitoring CO2 in cities can determine excess urban CO2 mixing ratios (i.e. the 'urban CO2 dome') when compared to values measured at a fixed, remote background site. We present results from a pilot study in Vancouver, BC, where the a network of our new sensors was deployed both in fixed network and in a mobile campaign and examine the spatial biases of the two methods.

  7. Qualitative Study to improve integrity of NET : Perspectives of Peer review and Authorship in research ethics

    International Nuclear Information System (INIS)

    Kwon, Hyuk; Min, Byung Joo

    2007-01-01

    After Dr. Hwang's Human embryonic stem cell scandal, research ethics stood out as the hot issue in both Korean scientific circles and general public. Science Publishing Group referred the limitation of peer review system and the absence of responsibility of author to one of the causes for the scandal. In order to prevent a similar fraud, Ministry of Science and Technology(MOST) established guidelines for research ethics and integrity in 2006. The guidelines included fabrication, falsification, and plagiarism(FFP) and unfair authorship. MOST committed the authority of administration and supervision to the society and the institutes of research to preserve the research integrity. The society and institute are charged with overseeing the implementation of enacted ethics guidelines. SCI(Scientific Citation Index) holds the guideline of research ethics and canon of the society which were crafted in order to guaranty the integrity and quality of the research. The publication policy pertains submission of articles, authorship and responsibilities of a reviewer. Societies pay attention to the peer review policy because the quality of articles is strongly dependent on the peer review. Nuclear Engineering and Technology (NET) is the journal of Korea Nuclear Society(KNS). NET is registered with SCIE(Science Citation Index Expanded), recently. In addition to the growth in external circulation, the improvement of quality requires the effort of the society to establish a strict peer review system and a fair authorship. The qualitative study on peer review and authorship of NET was put into force to improve the quality of NET. Based on studies and suggestions, the policy focuses on research ethics to improve the integrity of NET

  8. Qualitative Study to improve integrity of NET : Perspectives of Peer review and Authorship in research ethics

    Energy Technology Data Exchange (ETDEWEB)

    Kwon, Hyuk; Min, Byung Joo [Korea Atomic Energy Research Institute, Daejeon (Korea, Republic of)

    2007-10-15

    After Dr. Hwang's Human embryonic stem cell scandal, research ethics stood out as the hot issue in both Korean scientific circles and general public. Science Publishing Group referred the limitation of peer review system and the absence of responsibility of author to one of the causes for the scandal. In order to prevent a similar fraud, Ministry of Science and Technology(MOST) established guidelines for research ethics and integrity in 2006. The guidelines included fabrication, falsification, and plagiarism(FFP) and unfair authorship. MOST committed the authority of administration and supervision to the society and the institutes of research to preserve the research integrity. The society and institute are charged with overseeing the implementation of enacted ethics guidelines. SCI(Scientific Citation Index) holds the guideline of research ethics and canon of the society which were crafted in order to guaranty the integrity and quality of the research. The publication policy pertains submission of articles, authorship and responsibilities of a reviewer. Societies pay attention to the peer review policy because the quality of articles is strongly dependent on the peer review. Nuclear Engineering and Technology (NET) is the journal of Korea Nuclear Society(KNS). NET is registered with SCIE(Science Citation Index Expanded), recently. In addition to the growth in external circulation, the improvement of quality requires the effort of the society to establish a strict peer review system and a fair authorship. The qualitative study on peer review and authorship of NET was put into force to improve the quality of NET. Based on studies and suggestions, the policy focuses on research ethics to improve the integrity of NET.

  9. DARPA Ensemble-Based Modeling Large Graphs & Applications to Social Networks

    Science.gov (United States)

    2015-07-29

    such as gender , level of education, age, race, religion, etc. We want to design statistically sound experiments that allow us to correctly make...age” of a researcher, the widely differing citation conventions among different fields, and the co- authorship of researchers with differing h-indices

  10. Culture and Unmerited Authorship Credit: Who Wants It and Why?

    OpenAIRE

    Ren, Xiaopeng; Su, Hong; Lu, Kewen; Dong, Xiawei; Ouyang, Zhengzheng; Talhelm, Thomas

    2016-01-01

    Unmerited authorship is a practice common to many countries around the world, but are there systematic cultural differences in the practice? We tested whether scientists from collectivistic countries are more likely to add unmerited coauthors than scientists from individualistic countries. We analyzed archival data from top scientific journals (Study 1) and found that national collectivism predicted the number of authors, which might suggest more unmerited authors. Next, we found that collect...

  11. Estimation of the proteomic cancer co-expression sub networks by using association estimators.

    Directory of Open Access Journals (Sweden)

    Cihat Erdoğan

    Full Text Available In this study, the association estimators, which have significant influences on the gene network inference methods and used for determining the molecular interactions, were examined within the co-expression network inference concept. By using the proteomic data from five different cancer types, the hub genes/proteins within the disease-associated gene-gene/protein-protein interaction sub networks were identified. Proteomic data from various cancer types is collected from The Cancer Proteome Atlas (TCPA. Correlation and mutual information (MI based nine association estimators that are commonly used in the literature, were compared in this study. As the gold standard to measure the association estimators' performance, a multi-layer data integration platform on gene-disease associations (DisGeNET and the Molecular Signatures Database (MSigDB was used. Fisher's exact test was used to evaluate the performance of the association estimators by comparing the created co-expression networks with the disease-associated pathways. It was observed that the MI based estimators provided more successful results than the Pearson and Spearman correlation approaches, which are used in the estimation of biological networks in the weighted correlation network analysis (WGCNA package. In correlation-based methods, the best average success rate for five cancer types was 60%, while in MI-based methods the average success ratio was 71% for James-Stein Shrinkage (Shrink and 64% for Schurmann-Grassberger (SG association estimator, respectively. Moreover, the hub genes and the inferred sub networks are presented for the consideration of researchers and experimentalists.

  12. Research on a practical telecom and CATV co-network transmission system

    Science.gov (United States)

    Mao, Youju

    1998-12-01

    A practical co-network transmission system of Telecom and CATV over installed Telecom network is designed. The system, making use of WDM and other technologies, has undergone experiments and performance tests on the Public Switched Telephone Network, which illustrate that optical fiber telecommunication network could be thereby transformed into a unified broadband network integrating VOICE, DATA, and VEDIO expeditiously and conveniently.

  13. Extraction of temporal networks from term co-occurrences in online textual sources.

    Directory of Open Access Journals (Sweden)

    Marko Popović

    Full Text Available A stream of unstructured news can be a valuable source of hidden relations between different entities, such as financial institutions, countries, or persons. We present an approach to continuously collect online news, recognize relevant entities in them, and extract time-varying networks. The nodes of the network are the entities, and the links are their co-occurrences. We present a method to estimate the significance of co-occurrences, and a benchmark model against which their robustness is evaluated. The approach is applied to a large set of financial news, collected over a period of two years. The entities we consider are 50 countries which issue sovereign bonds, and which are insured by Credit Default Swaps (CDS in turn. We compare the country co-occurrence networks to the CDS networks constructed from the correlations between the CDS. The results show relatively small, but significant overlap between the networks extracted from the news and those from the CDS correlations.

  14. Gender disparities in high-quality research revealed by Nature Index journals.

    Science.gov (United States)

    Bendels, Michael H K; Müller, Ruth; Brueggmann, Doerthe; Groneberg, David A

    2018-01-01

    The present study aims to elucidate the state of gender equality in high-quality research by analyzing the representation of female authorships in the last decade (from 2008 to 2016). Based on the Gendermetrics platform, 293,557 research articles from 54 journals listed in the Nature Index were considered covering the categories Life Science, Multidisciplinary, Earth & Environmental and Chemistry. The core method was the combined analysis of the proportion of female authorships and the female-to-male odds ratio for first, co- and last authorships. The distribution of prestigious authorships was measured by the Prestige Index. 29.8% of all authorships and 33.1% of the first, 31.8% of the co- and 18.1% of the last authorships were held by women. The corresponding female-to-male odds ratio is 1.19 (CI: 1.18-1.20) for first, 1.35 (CI: 1.34-1.36) for co- and 0.47 (CI: 0.46-0.48) for last authorships. Women are underrepresented at prestigious authorships compared to men (Prestige Index = -0.42). The underrepresentation accentuates in highly competitive articles attracting the highest citation rates, namely, articles with many authors and articles that were published in highest-impact journals. More specifically, a large negative correlation between the 5-Year-Impact-Factor of a journal and the female representation at prestigious authorships was revealed (r(52) = -.63, P authorships) and are underrepresented at productivity levels of more than 2 articles per author. Articles with female key authors are less frequently cited than articles with male key authors. The gender-specific differences in citation rates increase the more authors contribute to an article. Distinct differences at the journal, journal category, continent and country level were revealed. The prognosis for the next decades forecast a very slow harmonization of authorships odds between the two genders.

  15. The scientific authorship of Doctor Chernoviz, from the popularization of medicine to professional training: the Dicionário de medicina popular, 1842-1890.

    Science.gov (United States)

    Medeiros, Aline da Silva

    2018-03-01

    This article reflects on the scientific authorship of Pedro Luiz Napoleão Chernoviz, based on his Dicionário de medicina popular, which was published in six editions between 1842 and 1890. The first part of the text discusses Chernoviz's position within the regimes of scientific authorship which were present in the medical community in Rio de Janeiro. Next, we analyze the author's arguments justifying a text that popularized medical science while this field strove for exclusivity in the practice of medicine. Finally, we suggest new meanings around Chernoviz's scientific authorship based on how the Dicionário was used and read by an initiated public.

  16. Blogs, Twitter Feeds, and Reddit Comments: Cross-domain Authorship Attribution

    Directory of Open Access Journals (Sweden)

    Overdorf Rebekah

    2016-07-01

    Full Text Available Stylometry is a form of authorship attribution that relies on the linguistic information to attribute documents of unknown authorship based on the writing styles of a suspect set of authors. This paper focuses on the cross-domain subproblem where the known and suspect documents differ in the setting in which they were created. Three distinct domains, Twitter feeds, blog entries, and Reddit comments, are explored in this work. We determine that state-of-the-art methods in stylometry do not perform as well in cross-domain situations (34.3% accuracy as they do in in-domain situations (83.5% accuracy and propose methods that improve performance in the cross-domain setting with both feature and classification level techniques which can increase accuracy to up to 70%. In addition to testing these approaches on a large real world dataset, we also examine real world adversarial cases where an author is actively attempting to hide their identity. Being able to identify authors across domains facilitates linking identities across the Internet making this a key security and privacy concern; users can take other measures to ensure their anonymity, but due to their unique writing style, they may not be as anonymous as they believe.

  17. An Effect of the Co-Operative Network Model for Students' Quality in Thai Primary Schools

    Science.gov (United States)

    Khanthaphum, Udomsin; Tesaputa, Kowat; Weangsamoot, Visoot

    2016-01-01

    This research aimed: 1) to study the current and desirable states of the co-operative network in developing the learners' quality in Thai primary schools, 2) to develop a model of the co-operative network in developing the learners' quality, and 3) to examine the results of implementation of the co-operative network model in the primary school.…

  18. Steering the Author Discourse: The Construction of Authorship in Quality TV, and the Case of Game of Thrones

    Directory of Open Access Journals (Sweden)

    Tobias Steiner

    2015-12-01

    Full Text Available This essay examines how the authorship is discursively constructed and employed as an indicator of quality in the marketing of US cable network HBO's TV series Game of Thrones (2011-. It relates the authorial concept of literary studies to that in the visual media and analyses mise-en-scène and narrative structure of the show pilot in order to detect markers of an authorial voice within the text. Subsequently, it turns to a selection of paratexts – critical reviews, producers' commentaries and special features of the show’s DVD box set – to show how the team of producers help manufacture and promote the presence of a showrunner-auteur collective in order to foster a perception of this text as a ‘quality TV’ narrative.

  19. Hierarchical and Non-Hierarchical Linear and Non-Linear Clustering Methods to “Shakespeare Authorship Question”

    Directory of Open Access Journals (Sweden)

    Refat Aljumily

    2015-09-01

    Full Text Available A few literary scholars have long claimed that Shakespeare did not write some of his best plays (history plays and tragedies and proposed at one time or another various suspect authorship candidates. Most modern-day scholars of Shakespeare have rejected this claim, arguing that strong evidence that Shakespeare wrote the plays and poems being his name appears on them as the author. This has caused and led to an ongoing scholarly academic debate for quite some long time. Stylometry is a fast-growing field often used to attribute authorship to anonymous or disputed texts. Stylometric attempts to resolve this literary puzzle have raised interesting questions over the past few years. The following paper contributes to “the Shakespeare authorship question” by using a mathematically-based methodology to examine the hypothesis that Shakespeare wrote all the disputed plays traditionally attributed to him. More specifically, the mathematically based methodology used here is based on Mean Proximity, as a linear hierarchical clustering method, and on Principal Components Analysis, as a non-hierarchical linear clustering method. It is also based, for the first time in the domain, on Self-Organizing Map U-Matrix and Voronoi Map, as non-linear clustering methods to cover the possibility that our data contains significant non-linearities. Vector Space Model (VSM is used to convert texts into vectors in a high dimensional space. The aim of which is to compare the degrees of similarity within and between limited samples of text (the disputed plays. The various works and plays assumed to have been written by Shakespeare and possible authors notably, Sir Francis Bacon, Christopher Marlowe, John Fletcher, and Thomas Kyd, where “similarity” is defined in terms of correlation/distance coefficient measure based on the frequency of usage profiles of function words, word bi-grams, and character triple-grams. The claim that Shakespeare authored all the disputed

  20. Comparing Existing Pipeline Networks with the Potential Scale of Future U.S. CO2 Pipeline Networks

    Energy Technology Data Exchange (ETDEWEB)

    Dooley, James J.; Dahowski, Robert T.; Davidson, Casie L.

    2008-02-29

    There is growing interest regarding the potential size of a future U.S. dedicated CO2 pipeline infrastructure if carbon dioxide capture and storage (CCS) technologies are commercially deployed on a large scale. In trying to understand the potential scale of a future national CO2 pipeline network, comparisons are often made to the existing pipeline networks used to deliver natural gas and liquid hydrocarbons to markets within the U.S. This paper assesses the potential scale of the CO2 pipeline system needed under two hypothetical climate policies and compares this to the extant U.S. pipeline infrastructures used to deliver CO2 for enhanced oil recovery (EOR), and to move natural gas and liquid hydrocarbons from areas of production and importation to markets. The data presented here suggest that the need to increase the size of the existing dedicated CO2 pipeline system should not be seen as a significant obstacle for the commercial deployment of CCS technologies.

  1. Legal Effects of Link Sharing in Social Networks

    Directory of Open Access Journals (Sweden)

    Eugenio Gil

    2015-12-01

    Full Text Available Knowledge sharing among individuals has changed deeply with the advent of social networks in the environment of Web 2.0. Every user has the possibility of publishing what he or she deems of interest for their audience, regardless of the origin or authorship of the piece of knowledge. It is generally accepted that as the user is sharing a link to a document or video, for example, without getting paid for it, there is no point in worrying about the rights of the original author. It seems that the concepts of authorship and originality is about to disappear as promised the structuralists fifty years ago. Nevertheless the legal system has not changed, nor have the economic interests concerned. This paper explores the last developments of the legal system concerning these issues.

  2. Text mining and network analysis to find functional associations of genes in high altitude diseases.

    Science.gov (United States)

    Bhasuran, Balu; Subramanian, Devika; Natarajan, Jeyakumar

    2018-05-02

    Travel to elevations above 2500 m is associated with the risk of developing one or more forms of acute altitude illness such as acute mountain sickness (AMS), high altitude cerebral edema (HACE) or high altitude pulmonary edema (HAPE). Our work aims to identify the functional association of genes involved in high altitude diseases. In this work we identified the gene networks responsible for high altitude diseases by using the principle of gene co-occurrence statistics from literature and network analysis. First, we mined the literature data from PubMed on high-altitude diseases, and extracted the co-occurring gene pairs. Next, based on their co-occurrence frequency, gene pairs were ranked. Finally, a gene association network was created using statistical measures to explore potential relationships. Network analysis results revealed that EPO, ACE, IL6 and TNF are the top five genes that were found to co-occur with 20 or more genes, while the association between EPAS1 and EGLN1 genes is strongly substantiated. The network constructed from this study proposes a large number of genes that work in-toto in high altitude conditions. Overall, the result provides a good reference for further study of the genetic relationships in high altitude diseases. Copyright © 2018 Elsevier Ltd. All rights reserved.

  3. Authorship and authenticity in Sherlock Holmes pastiches

    Directory of Open Access Journals (Sweden)

    Sanna Nyqvist

    2017-03-01

    Full Text Available Rewritings and adaptations of the Sherlock Holmes stories are traditionally called pastiches among fandom. This article juxtaposes that established use with the literary critical notion of pastiche as imitation of style, and shows how stylistic affinity to the originals produces complex effects in the imitations. The article identifies two main strands in the pastiches: one that aims to correct the mistakes and fill in the gaps in the original stories, and one that supplements the canon with stories Watson left untold. Balancing among homage, criticism, and usurpation, the pastiches comment on the original story world and its cultural context, and engage in fictions of authorship to account for the apparent inauthenticity of the retellings.

  4. Comparison of gene co-networks reveals the molecular mechanisms of the rice (Oryza sativa L.) response to Rhizoctonia solani AG1 IA infection.

    Science.gov (United States)

    Zhang, Jinfeng; Zhao, Wenjuan; Fu, Rong; Fu, Chenglin; Wang, Lingxia; Liu, Huainian; Li, Shuangcheng; Deng, Qiming; Wang, Shiquan; Zhu, Jun; Liang, Yueyang; Li, Ping; Zheng, Aiping

    2018-05-05

    Rhizoctonia solani causes rice sheath blight, an important disease affecting the growth of rice (Oryza sativa L.). Attempts to control the disease have met with little success. Based on transcriptional profiling, we previously identified more than 11,947 common differentially expressed genes (TPM > 10) between the rice genotypes TeQing and Lemont. In the current study, we extended these findings by focusing on an analysis of gene co-expression in response to R. solani AG1 IA and identified gene modules within the networks through weighted gene co-expression network analysis (WGCNA). We compared the different genes assigned to each module and the biological interpretations of gene co-expression networks at early and later modules in the two rice genotypes to reveal differential responses to AG1 IA. Our results show that different changes occurred in the two rice genotypes and that the modules in the two groups contain a number of candidate genes possibly involved in pathogenesis, such as the VQ protein. Furthermore, these gene co-expression networks provide comprehensive transcriptional information regarding gene expression in rice in response to AG1 IA. The co-expression networks derived from our data offer ideas for follow-up experimentation that will help advance our understanding of the translational regulation of rice gene expression changes in response to AG1 IA.

  5. Preliminary results of a techno-economic assessment of CO2 capture-network configurations in the industry

    NARCIS (Netherlands)

    Berghout, N.A.; Kuramochi, T.; van den Broek, M.A.; Ramirez, C.A.; Faaij, A.P.C.

    2013-01-01

    This paper evaluated the techno economic performance of several CO2 capture-network configurations for a cluster of sixteen industrial plants in the Netherlands using bottom up analysis. Preliminary findings indicate that centralizing capture equipment instead of capture equipment at plant sites

  6. Longitudinal Analysis of Female Authorship of Psychiatry Articles in Turkey.

    Science.gov (United States)

    Erden Aki, Özlem; Özçelik Eroğlu, Elçin; Uslu, Ece

    2015-03-01

    The number of women with careers in medicine and with academic positions at medical schools has increased substantially since the 1980s; however, women remain underrepresented in medical academia, which may be because of the fewer research publications authored by women. This study aimed to determine the gender distribution among Turkish authors of psychiatry articles published in international scientific journals during a 30-year period. The ISI Web of Science database was searched for all psychiatry publications between 1980 and 2009 using the search term Turkey. All articles were classified according to publication period (1980-1989, 1990-1999, 2000-2004, and 2005-2009), gender of the first and last authors, first author title, total number of authors, and type of article. In all, 1961 articles meet the study criteria. The first author of 36.5% of the articles and 34.9% of last authors were women. The percentage of female first and last authors did not differ according to publication period (p=0.57). To the best of our knowledge this is the first study to examine gender and authorship of psychiatric research in Turkey. In total, 33% of academic positions in Turkish university psychiatry departments were occupied by women, which is comparable to the percentage of female first authors of psychiatric research papers from Turkey. It could be concluded that women academics in psychiatry departments from state universities are as reproductive as their male counterparts, but there is still a "gender gap" in psychiatry field in our country.

  7. Network design for quantifying urban CO2 emissions: assessing trade-offs between precision and network density

    Directory of Open Access Journals (Sweden)

    A. J. Turner

    2016-11-01

    Full Text Available The majority of anthropogenic CO2 emissions are attributable to urban areas. While the emissions from urban electricity generation often occur in locations remote from consumption, many of the other emissions occur within the city limits. Evaluating the effectiveness of strategies for controlling these emissions depends on our ability to observe urban CO2 emissions and attribute them to specific activities. Cost-effective strategies for doing so have yet to be described. Here we characterize the ability of a prototype measurement network, modeled after the Berkeley Atmospheric CO2 Observation Network (BEACO2N in California's Bay Area, in combination with an inverse model based on the coupled Weather Research and Forecasting/Stochastic Time-Inverted Lagrangian Transport (WRF-STILT to improve our understanding of urban emissions. The pseudo-measurement network includes 34 sites at roughly 2 km spacing covering an area of roughly 400 km2. The model uses an hourly 1  ×  1 km2 emission inventory and 1  ×  1 km2 meteorological calculations. We perform an ensemble of Bayesian atmospheric inversions to sample the combined effects of uncertainties of the pseudo-measurements and the model. We vary the estimates of the combined uncertainty of the pseudo-observations and model over a range of 20 to 0.005 ppm and vary the number of sites from 1 to 34. We use these inversions to develop statistical models that estimate the efficacy of the combined model–observing system in reducing uncertainty in CO2 emissions. We examine uncertainty in estimated CO2 fluxes on the urban scale, as well as for sources embedded within the city such as a line source (e.g., a highway or a point source (e.g., emissions from the stacks of small industrial facilities. Using our inversion framework, we find that a dense network with moderate precision is the preferred setup for estimating area, line, and point sources from a combined uncertainty and cost

  8. Network analysis of genomic alteration profiles reveals co-altered functional modules and driver genes for glioblastoma.

    Science.gov (United States)

    Gu, Yunyan; Wang, Hongwei; Qin, Yao; Zhang, Yujing; Zhao, Wenyuan; Qi, Lishuang; Zhang, Yuannv; Wang, Chenguang; Guo, Zheng

    2013-03-01

    The heterogeneity of genetic alterations in human cancer genomes presents a major challenge to advancing our understanding of cancer mechanisms and identifying cancer driver genes. To tackle this heterogeneity problem, many approaches have been proposed to investigate genetic alterations and predict driver genes at the individual pathway level. However, most of these approaches ignore the correlation of alteration events between pathways and miss many genes with rare alterations collectively contributing to carcinogenesis. Here, we devise a network-based approach to capture the cooperative functional modules hidden in genome-wide somatic mutation and copy number alteration profiles of glioblastoma (GBM) from The Cancer Genome Atlas (TCGA), where a module is a set of altered genes with dense interactions in the protein interaction network. We identify 7 pairs of significantly co-altered modules that involve the main pathways known to be altered in GBM (TP53, RB and RTK signaling pathways) and highlight the striking co-occurring alterations among these GBM pathways. By taking into account the non-random correlation of gene alterations, the property of co-alteration could distinguish oncogenic modules that contain driver genes involved in the progression of GBM. The collaboration among cancer pathways suggests that the redundant models and aggravating models could shed new light on the potential mechanisms during carcinogenesis and provide new indications for the design of cancer therapeutic strategies.

  9. Document co-citation analysis to enhance transdisciplinary research

    Science.gov (United States)

    Trujillo, Caleb M.; Long, Tammy M.

    2018-01-01

    Specialized and emerging fields of research infrequently cross disciplinary boundaries and would benefit from frameworks, methods, and materials informed by other fields. Document co-citation analysis, a method developed by bibliometric research, is demonstrated as a way to help identify key literature for cross-disciplinary ideas. To illustrate the method in a useful context, we mapped peer-recognized scholarship related to systems thinking. In addition, three procedures for validation of co-citation networks are proposed and implemented. This method may be useful for strategically selecting information that can build consilience about ideas and constructs that are relevant across a range of disciplines. PMID:29308433

  10. Impact of One-Semester Outdoor Education Programs on Adolescent Perceptions of Self-Authorship

    Science.gov (United States)

    McGowan, Amanda L.

    2016-01-01

    This study investigated one-semester outdoor education program impact on adolescents' perceived self-authorship--the ability to form our identity independently from the expectations of external individuals and the capacity to invent our beliefs, identity, and relationships (Baxter Magolda, 1998; Kegan, 1982)--as measured by the Self-Authorship…

  11. Technological measures for controlling the use of copyrighted works of authorship in the information society

    Directory of Open Access Journals (Sweden)

    Spasić Vidoje

    2016-01-01

    Full Text Available Information technology has given rise to the problem of controlling the use of copyrighted works of authorship from their unauthorized use. In this context, one of the effective solutions is the application of technological protection measures, which are aimed at a more efficient application of the protection measures prescribed by the law. Technological protection measures imply the use of any technology, device or component which may be aimed at preventing or restricting an unauthorized use of a protected work of authorship, which has not been approved by the author or holder of some related right. Generally, all these measures may be classified into three basic groups: technological measures aimed at controlling access, technological measured aimed at controlling exploitation, and technological measures aimed at protecting the integrity of the work of authorship. Considering their technical characteristics and mode of application, they may be hardware-based measures, software-based measures, or a combination thereof. Modern technology has enabled the development of digital systems which entail a controlled use of copyrighted works and facilitate obtaining licences for their exploitation. They are commonly known as digital rights management (DRM. The DRM system should provide for a compromise between safeguarding the intellectual property rights of the copyright holder, the end user privacy, and system costs. The envisaged goals are achieved by employing various cryptographic measures. The process of developing technological protection measures is accompanied by concurrent attempts to circumvent the application of these measures. Thus, the effectiveness of these measures primarily depends on their legal protection, which has been recognized by a vast majority of legal systems, we now know the most modern legal system. However, the normative solutions are not uniform. The observed differences actually reflect problems in finding adequate forms

  12. Trends and Developments in Multi-Authorship in five Social Science disciplines from 1991 to 2014

    Energy Technology Data Exchange (ETDEWEB)

    Mayer, S.J

    2016-07-01

    This article explores developments in author numbers in five disciplines of the Social Sciences from 1991 to 2014, Economics, Educational Sciences, Political Science, Psychology, and Sociology. The relationship between the mean number of authors per article (in every discipline's five top journals) and three factors, publication year, international collaboration (IC), and article content (theoretical, experimental, or large-scale comparative) are analyzed. The findings show that single-authorship is decreasing and multi-authorship is on the rise, publication year was found to be significantly correlated with the number of authors. In addition, IC is positively correlated with the number of authors, even when publication year is controlled for. The content type “theoretical articles” is negatively related to the number of authors, even when publication year is controlled for. (Author)

  13. The Gender of Authorship: Heiner Müller and Christa Wolf

    OpenAIRE

    Helen Fehervary

    1980-01-01

    The relationship between sexuality and politics has always been an underlying assumption of the avant-garde. In recent East German avant-garde literature, the notion of authorship as production has become associated with technological rationality and the patriarchal socialist state. The ensuing crisis of the traditional male author has thus led necessarily to a radicalization of subjectivity and to the politics of gender. A comparison of two contemporary texts, one by a female author, one by ...

  14. Globalization of authorship in the marketing discipline: Does it help or hinder the field?

    NARCIS (Netherlands)

    S. Stremersch (Stefan); P.C. Verhoef (Peter)

    2005-01-01

    textabstractMarketing scholars have reflected upon the marketing discipline's internal evolution before. However, no prior study has assessed the globalization of authorship in our discipline, let alone assessed its consequences for the field. This paper addresses the following two questions: (1) Is

  15. Globalization of authorship in the marketing discipline : Does it help or hinder the field?

    NARCIS (Netherlands)

    Stremersch, S; Verhoef, PC

    2005-01-01

    Marketing scholars have reflected upon the marketing discipline's internal evolution before. However, no prior study has assessed the globalization of authorship in our discipline, let alone assessed its consequences for the field. This paper addresses the following two questions: (1) Is there

  16. Profiling and Co-expression Network Analysis of Learned Helplessness Regulated mRNAs and lncRNAs in the Mouse Hippocampus

    Directory of Open Access Journals (Sweden)

    Chaoqun Li

    2018-01-01

    Full Text Available Although studies provide insights into the neurobiology of stress and depression, the exact molecular mechanisms underlying their pathologies remain largely unknown. Long non-coding RNA (lncRNA has been implicated in brain functions and behavior. A potential link between lncRNA and psychiatric disorders has been proposed. However, it remains undetermined whether IncRNA regulation, in the brain, contributes to stress or depression pathologies. In this study, we used a valid animal model of depression-like symptoms; namely learned helplessness, RNA-seq, Gene Ontology and co-expression network analyses to profile the expression pattern of lncRNA and mRNA in the hippocampus of mice. We identified 6346 differentially expressed transcripts. Among them, 340 lncRNAs and 3559 protein coding mRNAs were differentially expressed in helpless mice in comparison with control and/or non-helpless mice (inescapable stress resilient mice. Gene Ontology and pathway enrichment analyses indicated that induction of helplessness altered expression of mRNAs enriched in fundamental biological functions implicated in stress/depression neurobiology such as synaptic, metabolic, cell survival and proliferation, developmental and chromatin modification functions. To explore the possible regulatory roles of the altered lncRNAs, we constructed co-expression networks composed of the lncRNAs and mRNAs. Among our differentially expressed lncRNAs, 17% showed significant correlation with genes. Functional co-expression analysis linked the identified lncRNAs to several cellular mechanisms implicated in stress/depression neurobiology. Importantly, 57% of the identified regulatory lncRNAs significantly correlated with 18 different synapse-related functions. Thus, the current study identifies for the first time distinct groups of lncRNAs regulated by induction of learned helplessness in the mouse brain. Our results suggest that lncRNA-directed regulatory mechanisms might contribute to

  17. Profiling and Co-expression Network Analysis of Learned Helplessness Regulated mRNAs and lncRNAs in the Mouse Hippocampus.

    Science.gov (United States)

    Li, Chaoqun; Cao, Feifei; Li, Shengli; Huang, Shenglin; Li, Wei; Abumaria, Nashat

    2017-01-01

    Although studies provide insights into the neurobiology of stress and depression, the exact molecular mechanisms underlying their pathologies remain largely unknown. Long non-coding RNA (lncRNA) has been implicated in brain functions and behavior. A potential link between lncRNA and psychiatric disorders has been proposed. However, it remains undetermined whether IncRNA regulation, in the brain, contributes to stress or depression pathologies. In this study, we used a valid animal model of depression-like symptoms; namely learned helplessness, RNA-seq, Gene Ontology and co-expression network analyses to profile the expression pattern of lncRNA and mRNA in the hippocampus of mice. We identified 6346 differentially expressed transcripts. Among them, 340 lncRNAs and 3559 protein coding mRNAs were differentially expressed in helpless mice in comparison with control and/or non-helpless mice (inescapable stress resilient mice). Gene Ontology and pathway enrichment analyses indicated that induction of helplessness altered expression of mRNAs enriched in fundamental biological functions implicated in stress/depression neurobiology such as synaptic, metabolic, cell survival and proliferation, developmental and chromatin modification functions. To explore the possible regulatory roles of the altered lncRNAs, we constructed co-expression networks composed of the lncRNAs and mRNAs. Among our differentially expressed lncRNAs, 17% showed significant correlation with genes. Functional co-expression analysis linked the identified lncRNAs to several cellular mechanisms implicated in stress/depression neurobiology. Importantly, 57% of the identified regulatory lncRNAs significantly correlated with 18 different synapse-related functions. Thus, the current study identifies for the first time distinct groups of lncRNAs regulated by induction of learned helplessness in the mouse brain. Our results suggest that lncRNA-directed regulatory mechanisms might contribute to stress

  18. Co-extinction in a host-parasite network: identifying key hosts for network stability.

    Science.gov (United States)

    Dallas, Tad; Cornelius, Emily

    2015-08-17

    Parasites comprise a substantial portion of total biodiversity. Ultimately, this means that host extinction could result in many secondary extinctions of obligate parasites and potentially alter host-parasite network structure. Here, we examined a highly resolved fish-parasite network to determine key hosts responsible for maintaining parasite diversity and network structure (quantified here as nestedness and modularity). We evaluated four possible host extinction orders and compared the resulting co-extinction dynamics to random extinction simulations; including host removal based on estimated extinction risk, parasite species richness and host level contributions to nestedness and modularity. We found that all extinction orders, except the one based on realistic extinction risk, resulted in faster declines in parasite diversity and network structure relative to random biodiversity loss. Further, we determined species-level contributions to network structure were best predicted by parasite species richness and host family. Taken together, we demonstrate that a small proportion of hosts contribute substantially to network structure and that removal of these hosts results in rapid declines in parasite diversity and network structure. As network stability can potentially be inferred through measures of network structure, our findings may provide insight into species traits that confer stability.

  19. Authorship and characteristics of articles in pharmacy journals: changes over a 20-year interval.

    Science.gov (United States)

    Dotson, Bryan; McManus, Kevin P; Zhao, Jing J; Whittaker, Peter

    2011-03-01

    To our knowledge, no studies have evaluated authorship patterns and characteristics of articles in pharmacy journals. To investigate changes over a 20-year period in authorship and characteristics of articles in pharmacy journals. All articles published in the American Journal of Health-System Pharmacy, The Annals of Pharmacotherapy, and Pharmacotherapy in 1989, 1999, and 2009 were reviewed. Data collected for each article included article type, number of authors, number of physician authors, whether any author was affiliated with a pharmaceutical company, and source of funding. The number of articles included was 574 in 1989, 659 in 1999, and 589 in 2009. The mean number of authors per article increased from 2.5 in 1989 to 2.8 in 1999 and 3.6 in 2009 (p6 authors) increased from 2% in 1989 to 3% in 1999 and 9% in 2009 (pInternational Committee of Medical Journal Editors.

  20. Independent Peer Review of Communications, Navigation, and Networking re-Configurable Testbed (CoNNeCT) Project Antenna Pointing Subsystem (APS) Integrated Gimbal Assembly (IGA) Structural Analysis

    Science.gov (United States)

    Raju, Ivatury S.; Larsen, Curtis E.; Pellicciotti, Joseph W.

    2010-01-01

    Glenn Research Center Chief Engineer's Office requested an independent review of the structural analysis and modeling of the Communications, Navigation, and Networking re-Configurable Testbed (CoNNeCT) Project Antenna Pointing Subsystem (APS) Integrated Gimbal Assembly (IGA) to be conducted by the NASA Engineering and Safety Center (NESC). At this time, the IGA had completed its critical design review (CDR). The assessment was to be a peer review of the NEi-NASTRAN1 model of the APS Antenna, and not a peer review of the design and the analysis that had been completed by the GRC team for CDR. Thus, only a limited amount of information was provided on the structural analysis. However, the NESC team had difficulty separating analysis concerns from modeling issues. The team studied the NASTRAN model, but did not fully investigate how the model was used by the CoNNeCT Project and how the Project was interpreting the results. The team's findings, observations, and NESC recommendations are contained in this report.

  1. Globally homochiral assembly of two-dimensional molecular networks triggered by co-absorbers.

    Science.gov (United States)

    Chen, Ting; Yang, Wen-Hong; Wang, Dong; Wan, Li-Jun

    2013-01-01

    Understanding the chirality induction and amplification processes, and the construction of globally homochiral surfaces, represent essential challenges in surface chirality studies. Here we report the induction of global homochirality in two-dimensional enantiomorphous networks of achiral molecules via co-assembly with chiral co-absorbers. The scanning tunnelling microscopy investigations and molecular mechanics simulations demonstrate that the point chirality of the co-absorbers transfers to organizational chirality of the assembly units via enantioselective supramolecular interactions, and is then hierarchically amplified to the global homochirality of two-dimensional networks. The global homochirality of the network assembly shows nonlinear dependence on the enantiomeric excess of chiral co-absorber in the solution phase, demonstrating, for the first time, the validation of the 'majority rules' for the homochirality control of achiral molecules at the liquid/solid interface. Such an induction and nonlinear chirality amplification effect promises a new approach towards two-dimensional homochirality control and may reveal important insights into asymmetric heterogeneous catalysis, chiral separation and chiral crystallization.

  2. CoCoRaHS (The Community Collaborative Rain, Hail and Snow Network): Analysis of Participant Survey Data to Uncover Learning through Participation

    Science.gov (United States)

    Holzer, M. A.; Zimmerman, T.; Doesken, N. J.; Reges, H. W.; Newman, N.; Turner, J.; Schwalbe, Z.

    2010-12-01

    CoCoRaHS (The Community Collaborative Rain, Hail and Snow network) is based out of Fort Collins Colorado and is an extremely successful citizen science project with over 15,000 volunteers collecting valuable precipitation data. Forecasters and scientists use data from this dense network to illuminate and illustrate the high small-scale variability of precipitation across the nation. This presentation will discuss the results of a survey of CoCoRaHS participants as related to 1) citizen scientists’ motivation and learning; 2) the challenges of identifying how people learn science in citizen science projects; and 3) a potential research-based framework for how people learn through engaging in the data collection within in a citizen science project. A comprehensive survey of 14,500 CoCoRaHS observers was recently conducted to uncover participant perceptions of numerous aspects of the CoCoRaHS program, including its goal of increasing climate literacy. The survey yielded a response rate of over 50%, and included measures of motivation, engagement and learning. In relationship to motivation and learning, the survey revealed that most (57.1%) observers would make precipitation observations regardless of being a CoCoRaHS volunteer, therefore their motivation is related to their inherent level of interest in weather. Others are motivated by their desire to learn more about weather and climate, they want to contribute to a scientific project, they think its fun, and/or it provides a sense of community. Because so many respondents already had knowledge and interest in weather and climate, identifying how and what people learn through participating was a challenge. However, the narrow project focus of collecting and reporting of local precipitation assisted in identifying aspects of learning. For instance, most (46.4%) observers said they increased their knowledge about the local variability in precipitation even though they had been collecting precipitation data for many

  3. The Private Lives of Minerals: Social Network Analysis Applied to Mineralogy and Petrology

    Science.gov (United States)

    Hazen, R. M.; Morrison, S. M.; Fox, P. A.; Golden, J. J.; Downs, R. T.; Eleish, A.; Prabhu, A.; Li, C.; Liu, C.

    2016-12-01

    Comprehensive databases of mineral species (rruff.info/ima) and their geographic localities and co-existing mineral assemblages (mindat.org) reveal patterns of mineral association and distribution that mimic social networks, as commonly applied to such varied topics as social media interactions, the spread of disease, terrorism networks, and research collaborations. Applying social network analysis (SNA) to common assemblages of rock-forming igneous and regional metamorphic mineral species, we find patterns of cohesion, segregation, density, and cliques that are similar to those of human social networks. These patterns highlight classic trends in lithologic evolution and are illustrated with sociograms, in which mineral species are the "nodes" and co-existing species form "links." Filters based on chemistry, age, structural group, and other parameters highlight visually both familiar and new aspects of mineralogy and petrology. We quantify sociograms with SNA metrics, including connectivity (based on the frequency of co-occurrence of mineral pairs), homophily (the extent to which co-existing mineral species share compositional and other characteristics), network closure (based on the degree of network interconnectivity), and segmentation (as revealed by isolated "cliques" of mineral species). Exploitation of large and growing mineral data resources with SNA offers promising avenues for discovering previously hidden trends in mineral diversity-distribution systematics, as well as providing new pedagogical approaches to teaching mineralogy and petrology.

  4. Discussion on the nuclear information resources co-constructing and sharing under network information

    International Nuclear Information System (INIS)

    Wu Yang

    2010-01-01

    During the tenth five-year plan, along with the digitization of information, and the development of information transmission network, the co-construction and sharing of China's nuclear industry information is facing a new development opportunities and challenges. This paper is based on the analysis of the nuclear library status and characteristics, combined of the development process of nuclear information resources over the past 20 years. For the characteristic of information sharing and services in the net environment, the problem in the current co-construction and sharing of nuclear information, and the needs of the future nuclear research and development of nuclear production, this paper forecast the work trends of nuclear information, and gives some countermeasure to strength the development of the co-construction and sharing of nuclear information. (author)

  5. Outage analysis for underlay relay-assisted cognitive networks

    KAUST Repository

    Tourki, Kamel; Qaraqe, Khalid A.; Alouini, Mohamed-Slim

    2012-01-01

    Cooperative relay technology was recently introduced into cognitive radio networks in order to enhance network capacity, scalability, and reliability of end-to-end communication. In this paper, we investigate an underlay cognitive network where the quality of service of the secondary link is maintained by triggering an opportunistic regenerative relaying once it falls under an unacceptable level. We first provide the exact cumulative density function (CDF) of received signal-to-noise (SNR) over each hop with co-located relays. Then, the CDFs are used to determine very accurate closed-form expression for the outage probability for a transmission rate R. We validate our analysis by showing that simulation results coincide with our analytical results in Rayleigh fading channels. © 2012 IEEE.

  6. Outage analysis for underlay relay-assisted cognitive networks

    KAUST Repository

    Tourki, Kamel

    2012-12-01

    Cooperative relay technology was recently introduced into cognitive radio networks in order to enhance network capacity, scalability, and reliability of end-to-end communication. In this paper, we investigate an underlay cognitive network where the quality of service of the secondary link is maintained by triggering an opportunistic regenerative relaying once it falls under an unacceptable level. We first provide the exact cumulative density function (CDF) of received signal-to-noise (SNR) over each hop with co-located relays. Then, the CDFs are used to determine very accurate closed-form expression for the outage probability for a transmission rate R. We validate our analysis by showing that simulation results coincide with our analytical results in Rayleigh fading channels. © 2012 IEEE.

  7. Stroke and myocardial infarction: a comparative systematic evaluation of gender-specific analysis, funding and authorship patterns in cardiovascular research.

    Science.gov (United States)

    Oertelt-Prigione, Sabine; Wiedmann, Silke; Endres, Matthias; Nolte, Christian H; Regitz-Zagrosek, Vera; Heuschmann, Peter

    2011-01-01

    Major gender differences exist in cardiovascular diseases and lead to different outcomes in women and men. However, attention and incorporation of sex-/gender-specific research might vary among disciplines. We therefore conducted a systematic review comparing publication characteristics and trends between stroke and myocardial infarction (MI) with respect to sex- and gender-related aspects. A systematic literature search was performed in PubMed to identify gender-/sex-related articles published for stroke and MI between 1977 and 2008. A specifically designed text mining program was used, and all literature was rated by two independent investigators. Publications were classified according to type of research performed, publication year, funding, geographical location, and gender of first and last authors. 962 articles were retrieved and limited to 405 (42%) gender-relevant publications; 131 on stroke and 274 on MI. Type of performed research differed, especially in disease management, which received little attention (17%) in stroke, while representing the major focus in MI (40%). In both areas, clinical presentation received little attention (3 and 5%). Although publications progressively increased in both fields, an 8- to 10-year time gap emerged for stroke compared to MI. Last authors in both areas were predominantly men, but female last authorship is increasing more significantly over time in the field of stroke. Research on sex and gender differences in MI and stroke is largely underfunded, particularly by the EU. The data demonstrate how sex-/gender-specific research differs between specialties, most likely due to the diverse interest, funding opportunities and authorship distributions identified. Copyright © 2011 S. Karger AG, Basel.

  8. From protein-protein interactions to protein co-expression networks: a new perspective to evaluate large-scale proteomic data.

    Science.gov (United States)

    Vella, Danila; Zoppis, Italo; Mauri, Giancarlo; Mauri, Pierluigi; Di Silvestre, Dario

    2017-12-01

    The reductionist approach of dissecting biological systems into their constituents has been successful in the first stage of the molecular biology to elucidate the chemical basis of several biological processes. This knowledge helped biologists to understand the complexity of the biological systems evidencing that most biological functions do not arise from individual molecules; thus, realizing that the emergent properties of the biological systems cannot be explained or be predicted by investigating individual molecules without taking into consideration their relations. Thanks to the improvement of the current -omics technologies and the increasing understanding of the molecular relationships, even more studies are evaluating the biological systems through approaches based on graph theory. Genomic and proteomic data are often combined with protein-protein interaction (PPI) networks whose structure is routinely analyzed by algorithms and tools to characterize hubs/bottlenecks and topological, functional, and disease modules. On the other hand, co-expression networks represent a complementary procedure that give the opportunity to evaluate at system level including organisms that lack information on PPIs. Based on these premises, we introduce the reader to the PPI and to the co-expression networks, including aspects of reconstruction and analysis. In particular, the new idea to evaluate large-scale proteomic data by means of co-expression networks will be discussed presenting some examples of application. Their use to infer biological knowledge will be shown, and a special attention will be devoted to the topological and module analysis.

  9. Formation of nanoscale networks: selectively swelling amphiphilic block copolymers with CO2-expanded liquids.

    Science.gov (United States)

    Gong, Jianliang; Zhang, Aijuan; Bai, Hua; Zhang, Qingkun; Du, Can; Li, Lei; Hong, Yanzhen; Li, Jun

    2013-02-07

    Polymeric films with nanoscale networks were prepared by selectively swelling an amphiphilic diblock copolymer, polystyrene-block-poly(4-vinylpyridine) (PS-b-P4VP), with the CO(2)-expanded liquid (CXL), CO(2)-methanol. The phase behavior of the CO(2)-methanol system was investigated by both theoretical calculation and experiments, revealing that methanol can be expanded by CO(2), forming homogeneous CXL under the experimental conditions. When treated with the CO(2)-methanol system, the spin cast compact PS-b-P4VP film was transformed into a network with interconnected pores, in a pressure range of 12-20 MPa and a temperature range of 45-60 °C. The formation mechanism of the network, involving plasticization of PS and selective swelling of P4VP, was proposed. Because the diblock copolymer diffusion process is controlled by the activated hopping of individual block copolymer chains with the thermodynamic barrier for moving PVP segments from one to another, the formation of the network structures is achieved in a short time scale and shows "thermodynamically restricted" character. Furthermore, the resulting polymer networks were employed as templates, for the preparation of polypyrrole networks, by an electrochemical polymerization process. The prepared porous polypyrrole film was used to fabricate a chemoresistor-type gas sensor which showed high sensitivity towards ammonia.

  10. Functional network analysis of obese and lean Göttingen minipigs elucidates changes in oxidative and inflammatory networks in obese pigs

    DEFF Research Database (Denmark)

    Boonen, Harrie C. M.; Moesgaard, Sophia G.; Birck, Malene M.

    2014-01-01

    animals mainly for known physical traits. On the other hand, functional network analysis revealed new co-segregations, particularly in the domain of inflammatory and oxidative stress markers in the obese animals that were not present in the lean. Functional networks of lean or obese minipigs could......The Göttingen minipig model of obesity is used in pre-clinical research to predict clinical outcome of new treatments for metabolic diseases. However, treatment effects often remain unnoticed when using single parameter statistical comparisons due to the small numbers of animals giving rise...... to large variation and insufficient statistical power. The purpose of this study was to perform a correlation matrix analysis of multiple multi-scale parameters describing co-segregation of traits in order to identify differences between lean and obese minipigs. More than 40 parameters, ranging from...

  11. Bayesian network analysis revealed the connectivity difference of the default mode network from the resting-state to task-state

    Science.gov (United States)

    Wu, Xia; Yu, Xinyu; Yao, Li; Li, Rui

    2014-01-01

    Functional magnetic resonance imaging (fMRI) studies have converged to reveal the default mode network (DMN), a constellation of regions that display co-activation during resting-state but co-deactivation during attention-demanding tasks in the brain. Here, we employed a Bayesian network (BN) analysis method to construct a directed effective connectivity model of the DMN and compared the organizational architecture and interregional directed connections under both resting-state and task-state. The analysis results indicated that the DMN was consistently organized into two closely interacting subsystems in both resting-state and task-state. The directed connections between DMN regions, however, changed significantly from the resting-state to task-state condition. The results suggest that the DMN intrinsically maintains a relatively stable structure whether at rest or performing tasks but has different information processing mechanisms under varied states. PMID:25309414

  12. Uncovering robust patterns of microRNA co-expression across cancers using Bayesian Relevance Networks.

    Directory of Open Access Journals (Sweden)

    Parameswaran Ramachandran

    Full Text Available Co-expression networks have long been used as a tool for investigating the molecular circuitry governing biological systems. However, most algorithms for constructing co-expression networks were developed in the microarray era, before high-throughput sequencing-with its unique statistical properties-became the norm for expression measurement. Here we develop Bayesian Relevance Networks, an algorithm that uses Bayesian reasoning about expression levels to account for the differing levels of uncertainty in expression measurements between highly- and lowly-expressed entities, and between samples with different sequencing depths. It combines data from groups of samples (e.g., replicates to estimate group expression levels and confidence ranges. It then computes uncertainty-moderated estimates of cross-group correlations between entities, and uses permutation testing to assess their statistical significance. Using large scale miRNA data from The Cancer Genome Atlas, we show that our Bayesian update of the classical Relevance Networks algorithm provides improved reproducibility in co-expression estimates and lower false discovery rates in the resulting co-expression networks. Software is available at www.perkinslab.ca.

  13. Hierarchically porous MgCo2O4 nanochain networks: template-free synthesis and catalytic application

    Science.gov (United States)

    Guan, Xiangfeng; Yu, Yunlong; Li, Xiaoyan; Chen, Dagui; Luo, Peihui; Zhang, Yu; Guo, Shanxin

    2018-01-01

    In this work, hierarchically porous MgCo2O4 nanochain networks were successfully synthesized by a novel template-free method realized via a facile solvothermal synthesis followed by a heat treatment. The morphologies of MgCo2O4 precursor could be adjusted from nanosheets to nanobelts and finally to interwoven nanowires, depending on the volume ratio of diethylene glycol to deionized water in the solution. After calcination, the interwoven precursor nanowires were transformed to hierarchical MgCo2O4 nanochain networks with marco-/meso-porosity, which are composed of 10-20 nm nanoparticles connected one by one. Moreover, the relative formation mechanism of the MgCo2O4 nanochain networks was discussed. More importantly, when evaluated as catalytic additive for AP thermal decomposition, the MgCo2O4 nanochain networks show excellent accelerating effect. It is benefited from the unique hierarchically porous network structure and multicomponent effect, which effectively accelerates ammonia oxidation and {{{{ClO}}}4}- species dissociation. This approach opens the way to design other hierarchically porous multicomponent metal oxides.

  14. C60-pentacene network formation by 2-D co-crystallization.

    Science.gov (United States)

    Jin, Wei; Dougherty, Daniel B; Cullen, William G; Robey, Steven; Reutt-Robey, Janice E

    2009-09-01

    We report experiments highlighting the mechanistic role of mobile pentacene precursors in the formation of a network C(60)-pentacene co-crystalline structure on Ag(111). This co-crystalline arrangement was first observed by low temperature scanning tunneling microscopy (STM) by Zhang et al. (Zhang, H. L.; Chen, W.; Huang, H.; Chen, L.; Wee, A. T. S. J. Am. Chem. Soc. 2008, 130, 2720-2721). We now show that this structure forms readily at room temperature from a two-dimensional (2-D) mixture. Pentacene, evaporated onto Ag(111) to coverages of 0.4-1.0 ML, produces a two-dimensional (2-D) gas. Subsequently deposited C(60) molecules combine with the pentacene 2-D gas to generate a network structure, consisting of chains of close-packed C(60) molecules, spaced by individual C(60) linkers and 1 nm x 2.5 nm pores containing individual pentacene molecules. Spontaneous formation of this stoichiometric (C(60))(4)-pentacene network from a range of excess pentacene surface coverage (0.4 to 1.0 ML) indicates a self-limiting assembly process. We refine the structure model for this phase and discuss the generality of this co-crystallization mechanism.

  15. BIR 2014 - Bibliometric-enhanced Information Retrieval

    DEFF Research Database (Denmark)

    This first “Bibliometric-enhanced Information Retrieval” (BIR 2014) workshop1 aims to engage with the IR community about possible links to bibliometrics and scholarly communication. Bibliometric techniques are not yet widely used to enhance retrieval processes in digital libraries, although...... analysis of co-authorship network, can improve retrieval services for specific communities, as well as for large, cross-domain collections. This workshop aims to raise awareness of the missing link between information retrieval (IR) and bibliometrics / scientometrics and to create a common ground...... for the incorporation of bibliometric-enhanced services into retrieval at the digital library interface. Our interests include information retrieval, information seeking, science modelling, network analysis, and digital libraries. The goal is to apply insights from bibliometrics, scientometrics, and informetrics...

  16. "Journal of Documentary Reproduction", 1938-1942: Domain as Reflected in Characteristics of Authorship and Citation.

    Science.gov (United States)

    Walker, Thomas D.

    1997-01-01

    Places the "Journal of Documentary Reproduction", published by the American Library Association, in an historical context and defines its domain in terms of the characteristics of its contributors. Authorship characteristics include occupation, institutional affiliation, geographic distribution, and gender. (Author/LRW)

  17. Organized network for supporting the amateur-scientist co-operation in Finland

    Science.gov (United States)

    Mäkelä, V.; Haukka, H.; Oksanen, A.; Hentunen, V.-P.

    2014-04-01

    PROAM network is a working group of Ursa Astronomical Association [1] for supporting Finnish amateur astronomers participating to co-operation projects between professional and amateur astronomers. The network relays the information on projects, maintains professional contacts and arranges training on technical skills for research work.

  18. Preliminary investigation to use Bayesian networks in predicting NOx, CO, CO2 and HC emissions

    International Nuclear Information System (INIS)

    Karri, V.; Hafez, H.A.; Kristiansen, M.

    2005-01-01

    A Bayesian network was used to characterize Lister-Petter diesel combustion engine emissions. Three sets of tests were conducted: (1) full open throttle; (2) 68 per cent closed throttle; and (3) 58 per cent closed throttle. The first test simulated normal lean burning conditions, while the last 2 tests simulated a clogged air filter. Experiments were conducted in an engine generator assembly with a fixed speed governor of 1500 rpm. Electrochemical sensors were used to detect nitrogen oxide (NO x ); carbon dioxide (CO 2 ); carbon monoxide (CO); hydrocarbons; and particulate matter. Engine oil, engine outlet, and engine inlet and exhaust temperatures were digitally measured. Data from 20 experimental sets of tests were used to train, test and project accurate emission levels. The Bayesian network model was built using input variables and measured output parameters related to the exhaust components. Human knowledge was used to build relationships between defined nodes and a path condition algorithm. An estimation-maximization algorithm was used. Results of the validation study showed that the Bayesian network accurately predicted emissions levels. It was concluded that it is possible to predict engine emission outputs with probable acceptable levels using Bayesian network modelling techniques and limited experimental data. 33 refs., 3 tabs., 8 figs

  19. Directed evolution to re-adapt a co-evolved network within an enzyme.

    Science.gov (United States)

    Strafford, John; Payongsri, Panwajee; Hibbert, Edward G; Morris, Phattaraporn; Batth, Sukhjeet S; Steadman, David; Smith, Mark E B; Ward, John M; Hailes, Helen C; Dalby, Paul A

    2012-01-01

    We have previously used targeted active-site saturation mutagenesis to identify a number of transketolase single mutants that improved activity towards either glycolaldehyde (GA), or the non-natural substrate propionaldehyde (PA). Here, all attempts to recombine the singles into double mutants led to unexpected losses of specific activity towards both substrates. A typical trade-off occurred between soluble expression levels and specific activity for all single mutants, but many double mutants decreased both properties more severely suggesting a critical loss of protein stability or native folding. Statistical coupling analysis (SCA) of a large multiple sequence alignment revealed a network of nine co-evolved residues that affected all but one double mutant. Such networks maintain important functional properties such as activity, specificity, folding, stability, and solubility and may be rapidly disrupted by introducing one or more non-naturally occurring mutations. To identify variants of this network that would accept and improve upon our best D469 mutants for activity towards PA, we created a library of random single, double and triple mutants across seven of the co-evolved residues, combining our D469 variants with only naturally occurring mutations at the remaining sites. A triple mutant cluster at D469, E498 and R520 was found to behave synergistically for the specific activity towards PA. Protein expression was severely reduced by E498D and improved by R520Q, yet variants containing both mutations led to improved specific activity and enzyme expression, but with loss of solubility and the formation of inclusion bodies. D469S and R520Q combined synergistically to improve k(cat) 20-fold for PA, more than for any previous transketolase mutant. R520Q also doubled the specific activity of the previously identified D469T to create our most active transketolase mutant to date. Our results show that recombining active-site mutants obtained by saturation mutagenesis

  20. The health impact of trade and investment agreements: a quantitative systematic review and network co-citation analysis.

    Science.gov (United States)

    Barlow, Pepita; McKee, Martin; Basu, Sanjay; Stuckler, David

    2017-03-08

    Regional trade agreements are major international policy instruments that shape macro-economic and political systems. There is widespread debate as to whether and how these agreements pose risks to public health. Here we perform a comprehensive systematic review of quantitative studies of the health impact of trade and investment agreements. We identified studies from searches in PubMed, Web of Science, EMBASE, and Global Health Online. Research articles were eligible for inclusion if they were quantitative studies of the health impacts of trade and investment agreements or policy. We systematically reviewed study findings, evaluated quality using the Quality Assessment Tool from the Effective Public Health Practice Project, and performed network citation analysis to study disciplinary siloes. Seventeen quantitative studies met our inclusion criteria. There was consistent evidence that implementing trade agreements was associated with increased consumption of processed foods and sugar-sweetened beverages. Granting import licenses for patented drugs was associated with increased access to pharmaceuticals. Implementing trade agreements and associated policies was also correlated with higher cardiovascular disease incidence and higher Body Mass Index (BMI), whilst correlations with tobacco consumption, under-five mortality, maternal mortality, and life expectancy were inconclusive. Overall, the quality of studies is weak or moderately weak, and co-citation analysis revealed a relative isolation of public health from economics. We identified limitations in existing studies which preclude definitive conclusions of the health impacts of regional trade and investment agreements. Few address unobserved confounding, and many possible consequences and mechanisms linking trade and investment agreements to health remain poorly understood. Results from our co-citation analysis suggest scope for greater interdisciplinary collaboration. Notwithstanding these limitations, our

  1. Network analysis literacy a practical approach to the analysis of networks

    CERN Document Server

    Zweig, Katharina A

    2014-01-01

    Network Analysis Literacy focuses on design principles for network analytics projects. The text enables readers to: pose a defined network analytic question; build a network to answer the question; choose or design the right network analytic methods for a particular purpose, and more.

  2. A análise de redes sociais no mundo lusófono: contributos para o conhecimento de uma comunidade científica em desenvolvimento

    Directory of Open Access Journals (Sweden)

    Marta Varanda

    2012-06-01

    Full Text Available This article intends to characterize a group of social scientists we have distinguished by its use of social network analysis (SNA as a theoretical and methodological perspective, and which we circumscribe to the lusophone’s world. Through the characterization of their social profile and the measurement of these actors interdependencies (collaboration, advice and co-authorship, we wish to contribute to the explanation of the development of SNA in the lusophony. We elaborate hypothesis concerning the inhibitors and motivators of its development in this linguistic context.

  3. 30 years of IJPSM publications: an analysis

    NARCIS (Netherlands)

    Van Thiel, Sandra; Bouwman, Robin

    2017-01-01

    Purpose By using the analysis of 30 years of publications in the journal International Journal of Public Sector Management, the purpose of this paper is to discover trends in publications, such as single vs joint authorship, topics and country of origin in authorship and readership.

  4. Recognizing and Imitating Programmer Style: Adversaries in Program Authorship Attribution

    Directory of Open Access Journals (Sweden)

    Simko Lucy

    2018-01-01

    Full Text Available Source code attribution classifiers have recently become powerful. We consider the possibility that an adversary could craft code with the intention of causing a misclassification, i.e., creating a forgery of another author’s programming style in order to hide the forger’s own identity or blame the other author. We find that it is possible for a non-expert adversary to defeat such a system. In order to inform the design of adversarially resistant source code attribution classifiers, we conduct two studies with C/C++ programmers to explore the potential tactics and capabilities both of such adversaries and, conversely, of human analysts doing source code authorship attribution. Through the quantitative and qualitative analysis of these studies, we (1 evaluate a state-of-the-art machine classifier against forgeries, (2 evaluate programmers as human analysts/forgery detectors, and (3 compile a set of modifications made to create forgeries. Based on our analyses, we then suggest features that future source code attribution systems might incorporate in order to be adversarially resistant.

  5. Weighted gene co-expression network analysis reveals potential genes involved in early metamorphosis process in sea cucumber Apostichopus japonicus.

    Science.gov (United States)

    Li, Yongxin; Kikuchi, Mani; Li, Xueyan; Gao, Qionghua; Xiong, Zijun; Ren, Yandong; Zhao, Ruoping; Mao, Bingyu; Kondo, Mariko; Irie, Naoki; Wang, Wen

    2018-01-01

    Sea cucumbers, one main class of Echinoderms, have a very fast and drastic metamorphosis process during their development. However, the molecular basis under this process remains largely unknown. Here we systematically examined the gene expression profiles of Japanese common sea cucumber (Apostichopus japonicus) for the first time by RNA sequencing across 16 developmental time points from fertilized egg to juvenile stage. Based on the weighted gene co-expression network analysis (WGCNA), we identified 21 modules. Among them, MEdarkmagenta was highly expressed and correlated with the early metamorphosis process from late auricularia to doliolaria larva. Furthermore, gene enrichment and differentially expressed gene analysis identified several genes in the module that may play key roles in the metamorphosis process. Our results not only provide a molecular basis for experimentally studying the development and morphological complexity of sea cucumber, but also lay a foundation for improving its emergence rate. Copyright © 2017 Elsevier Inc. All rights reserved.

  6. FastGCN: a GPU accelerated tool for fast gene co-expression networks.

    Directory of Open Access Journals (Sweden)

    Meimei Liang

    Full Text Available Gene co-expression networks comprise one type of valuable biological networks. Many methods and tools have been published to construct gene co-expression networks; however, most of these tools and methods are inconvenient and time consuming for large datasets. We have developed a user-friendly, accelerated and optimized tool for constructing gene co-expression networks that can fully harness the parallel nature of GPU (Graphic Processing Unit architectures. Genetic entropies were exploited to filter out genes with no or small expression changes in the raw data preprocessing step. Pearson correlation coefficients were then calculated. After that, we normalized these coefficients and employed the False Discovery Rate to control the multiple tests. At last, modules identification was conducted to construct the co-expression networks. All of these calculations were implemented on a GPU. We also compressed the coefficient matrix to save space. We compared the performance of the GPU implementation with those of multi-core CPU implementations with 16 CPU threads, single-thread C/C++ implementation and single-thread R implementation. Our results show that GPU implementation largely outperforms single-thread C/C++ implementation and single-thread R implementation, and GPU implementation outperforms multi-core CPU implementation when the number of genes increases. With the test dataset containing 16,000 genes and 590 individuals, we can achieve greater than 63 times the speed using a GPU implementation compared with a single-thread R implementation when 50 percent of genes were filtered out and about 80 times the speed when no genes were filtered out.

  7. Credit Where Credit’s Due: Accounting for Co-Authorship in Citation Counts

    NARCIS (Netherlands)

    Tol, R.S.J.

    2011-01-01

    I propose a new method (Pareto weights) to objectively attribute citations to co-authors. Previous methods either profess ignorance about the seniority of co-authors (egalitarian weights) or are based in an ad hoc way on the order of authors (rank weights). Pareto weights are based on the respective

  8. Research on Biodiversity and Climate Change at a Distance: Collaboration Networks between Europe and Latin America and the Caribbean.

    Directory of Open Access Journals (Sweden)

    Olivier Dangles

    Full Text Available Biodiversity loss and climate change are both globally significant issues that must be addressed through collaboration across countries and disciplines. With the December 2015 COP21 climate conference in Paris and the recent creation of the Intergovernmental Platform on Biodiversity and Ecosystem Services (IPBES, it has become critical to evaluate the capacity for global research networks to develop at the interface between biodiversity and climate change. In the context of the European Union (EU strategy to stand as a world leader in tackling global challenges, the European Commission has promoted ties between the EU and Latin America and the Caribbean (LAC in science, technology and innovation. However, it is not clear how these significant interactions impact scientific cooperation at the interface of biodiversity and climate change. We looked at research collaborations between two major regions-the European Research Area (ERA and LAC-that addressed both biodiversity and climate change. We analysed the temporal evolution of these collaborations, whether they were led by ERA or LAC teams, and which research domains they covered. We surveyed publications listed on the Web of Science that were authored by researchers from both the ERA and LAC and that were published between 2003 and 2013. We also run similar analyses on other topics and other continents to provide baseline comparisons. Our results revealed a steady increase in scientific co-authorships between ERA and LAC countries as a result of the increasingly complex web of relationships that has been weaved among scientists from the two regions. The ERA-LAC co-authorship increase for biodiversity and climate change was higher than those reported for other topics and for collaboration with other continents. We also found strong differences in international collaboration patterns within the LAC: co-publications were fewest from researchers in low- and lower-middle-income countries and most

  9. Research on Biodiversity and Climate Change at a Distance: Collaboration Networks between Europe and Latin America and the Caribbean.

    Science.gov (United States)

    Dangles, Olivier; Loirat, Jean; Freour, Claire; Serre, Sandrine; Vacher, Jean; Le Roux, Xavier

    2016-01-01

    Biodiversity loss and climate change are both globally significant issues that must be addressed through collaboration across countries and disciplines. With the December 2015 COP21 climate conference in Paris and the recent creation of the Intergovernmental Platform on Biodiversity and Ecosystem Services (IPBES), it has become critical to evaluate the capacity for global research networks to develop at the interface between biodiversity and climate change. In the context of the European Union (EU) strategy to stand as a world leader in tackling global challenges, the European Commission has promoted ties between the EU and Latin America and the Caribbean (LAC) in science, technology and innovation. However, it is not clear how these significant interactions impact scientific cooperation at the interface of biodiversity and climate change. We looked at research collaborations between two major regions-the European Research Area (ERA) and LAC-that addressed both biodiversity and climate change. We analysed the temporal evolution of these collaborations, whether they were led by ERA or LAC teams, and which research domains they covered. We surveyed publications listed on the Web of Science that were authored by researchers from both the ERA and LAC and that were published between 2003 and 2013. We also run similar analyses on other topics and other continents to provide baseline comparisons. Our results revealed a steady increase in scientific co-authorships between ERA and LAC countries as a result of the increasingly complex web of relationships that has been weaved among scientists from the two regions. The ERA-LAC co-authorship increase for biodiversity and climate change was higher than those reported for other topics and for collaboration with other continents. We also found strong differences in international collaboration patterns within the LAC: co-publications were fewest from researchers in low- and lower-middle-income countries and most prevalent from

  10. Trends in authorship based on gender and nationality in published neuroscience literature

    OpenAIRE

    Divyanshu Dubey; Anshudha Sawhney; Aparna Atluru; Amod Amritphale; Archana Dubey; Jaya Trivedi

    2016-01-01

    Objective: To evaluate the disparity in authorship based on gender and nationality of institutional affiliation among journals from developed and developing countries. Materials and Methods: Original articles from two neuroscience journals, with a 5 year impact factor >15 (Neuron and Nature Neuroscience) and from two neurology journals from a developing country (Neurology India and Annals of Indian Academy of Neurology) were categorized by gender and institutional affiliation of first and...

  11. May I steal your sentences? Brazilian modernists debate the issue of authorship

    Directory of Open Access Journals (Sweden)

    Marcia Regina Jaschke Machado

    2014-06-01

    Full Text Available The topic of authorship has been thoroughly debated among Brazilian modernist intellectuals, especially during the 1920s. What we call search for the  authorial personality of modern styles was often linked to notions of influence and plagiarism. This article aims at presenting this debate in texts published at the time and in letters exchanged between Mário de Andrade and some of his interlocutors.

  12. Co-regulation of metabolic genes is better explained by flux coupling than by network distance.

    Directory of Open Access Journals (Sweden)

    Richard A Notebaart

    2008-01-01

    Full Text Available To what extent can modes of gene regulation be explained by systems-level properties of metabolic networks? Prior studies on co-regulation of metabolic genes have mainly focused on graph-theoretical features of metabolic networks and demonstrated a decreasing level of co-expression with increasing network distance, a naïve, but widely used, topological index. Others have suggested that static graph representations can poorly capture dynamic functional associations, e.g., in the form of dependence of metabolic fluxes across genes in the network. Here, we systematically tested the relative importance of metabolic flux coupling and network position on gene co-regulation, using a genome-scale metabolic model of Escherichia coli. After validating the computational method with empirical data on flux correlations, we confirm that genes coupled by their enzymatic fluxes not only show similar expression patterns, but also share transcriptional regulators and frequently reside in the same operon. In contrast, we demonstrate that network distance per se has relatively minor influence on gene co-regulation. Moreover, the type of flux coupling can explain refined properties of the regulatory network that are ignored by simple graph-theoretical indices. Our results underline the importance of studying functional states of cellular networks to define physiologically relevant associations between genes and should stimulate future developments of novel functional genomic tools.

  13. Ferramentas tecnológicas para investigação de autoria Technology tools for investigation of authorship

    Directory of Open Access Journals (Sweden)

    Lidia Helena Muller Zart

    2012-01-01

    Full Text Available Este estudo busca verificar como se dá o processo da autoria, permitido pela tecnologia, nas produções textuais em ambientes digitais, com o uso da internet. Esse ambiente de produção textual no meio digital suscita implicações sobre a concepção de autoria nos textos digitais e sobre práticas escolares em contextos digitais, em que as marcas de um autor individual desaparecem em favor de um autor coletivo constituído pelo hipertexto. Apontamos este aspecto como constituidor da concepção de letramento digital, desenvolvido na perspectiva da autoria segundo a função autor (FOUCAULT, 1996; 2006, e de reprodutibilidade técnica (BENJAMIN, 1994.This study aims to verify how is the process of authorship, enabled by technology, in the textual productions in digital environments, using the Internet. This textual production environment in the digital context raises implications about the concept of authorship in digital texts and about school practices in digital environments, in which the characteristics of an individual author disappear in favor of a collective author constituted by a hypertext. We point this aspect as the constitutor of the digital literacy conception, developed in the perspective of authorship according to the author's function (FOUCAULT, 1996; 2006 and of a technical reproducibility (BENJAMIN, 1994.

  14. Identifying miRNA and gene modules of colon cancer associated with pathological stage by weighted gene co-expression network analysis

    Directory of Open Access Journals (Sweden)

    Zhou X

    2018-05-01

    Full Text Available Xian-guo Zhou,1,2,* Xiao-liang Huang,1,2,* Si-yuan Liang,1–3 Shao-mei Tang,1,2 Si-kao Wu,1,2 Tong-tong Huang,1,2 Zeng-nan Mo,1,2,4 Qiu-yan Wang1,2,5 1Center for Genomic and Personalized Medicine, Guangxi Medical University, Nanning, Guangxi Zhuang Autonomous Region, People’s Republic of China; 2Guangxi Key Laboratory for Genomic and Personalized Medicine, Guangxi Collaborative Innovation Center for Genomic and Personalized Medicine, Nanning, Guangxi Zhuang Autonomous Region, People’s Republic of China; 3Department of Colorectal Surgery, First Affiliated Hospital of Guangxi Medical University, Nanning, Guangxi Zhuang Autonomous Region, People’s Republic of China; 4Department of Urology and Nephrology, The First Affiliated Hospital of Guangxi, Medical University, Nanning, Guangxi Zhuang Autonomous Region, People’s Republic of China; 5Guangxi Colleges and Universities Key Laboratory of Biological Molecular Medicine Research, Guangxi Medical University, Nanning, Guangxi Zhuang Autonomous Region, People’s Republic of China *These authors contributed equally to this work Introduction: Colorectal cancer (CRC is the fourth most common cause of cancer-related mortality worldwide. The tumor, node, metastasis (TNM stage remains the standard for CRC prognostication. Identification of meaningful microRNA (miRNA and gene modules or representative biomarkers related to the pathological stage of colon cancer helps to predict prognosis and reveal the mechanisms behind cancer progression.Materials and methods: We applied a systems biology approach by combining differential expression analysis and weighted gene co-expression network analysis (WGCNA to detect the pathological stage-related miRNA and gene modules and construct a miRNA–gene network. The Cancer Genome Atlas (TCGA colon adenocarcinoma (CAC RNA-sequencing data and miRNA-sequencing data were subjected to WGCNA analysis, and the GSE29623, GSE35602 and GSE39396 were utilized to validate and

  15. Liegnitzer, Hundsfeld or Lew? The question of authorship of popular Medieval fighting teachings

    Directory of Open Access Journals (Sweden)

    Jaquet Daniel

    2014-05-01

    Full Text Available In numerous 15th and 16th century Fightbooks several sets of teachings appear alongside the glosses of Liechtenauer’s Epitome on armoured fighting and fighting on horseback (Harnischfechten and Rossfechten often enough to be considered auctoritas on these subjects. However, their authorship from various witnesses are attributed to different authorial figures - Andreas Liegnitzer, Martin Hundsfeld, Jud Lew.

  16. Uncovering packaging features of co-regulated modules based on human protein interaction and transcriptional regulatory networks

    Directory of Open Access Journals (Sweden)

    He Weiming

    2010-07-01

    Full Text Available Abstract Background Network co-regulated modules are believed to have the functionality of packaging multiple biological entities, and can thus be assumed to coordinate many biological functions in their network neighbouring regions. Results Here, we weighted edges of a human protein interaction network and a transcriptional regulatory network to construct an integrated network, and introduce a probabilistic model and a bipartite graph framework to exploit human co-regulated modules and uncover their specific features in packaging different biological entities (genes, protein complexes or metabolic pathways. Finally, we identified 96 human co-regulated modules based on this method, and evaluate its effectiveness by comparing it with four other methods. Conclusions Dysfunctions in co-regulated interactions often occur in the development of cancer. Therefore, we focussed on an example co-regulated module and found that it could integrate a number of cancer-related genes. This was extended to causal dysfunctions of some complexes maintained by several physically interacting proteins, thus coordinating several metabolic pathways that directly underlie cancer.

  17. Evolution of primary care databases in UK: a scientometric analysis of research output.

    Science.gov (United States)

    Vezyridis, Paraskevas; Timmons, Stephen

    2016-10-11

    To identify publication and citation trends, most productive institutions and countries, top journals, most cited articles and authorship networks from articles that used and analysed data from primary care databases (CPRD, THIN, QResearch) of pseudonymised electronic health records (EHRs) in UK. Descriptive statistics and scientometric tools were used to analyse a SCOPUS data set of 1891 articles. Open access software was used to extract networks from the data set (Table2Net), visualise and analyse coauthorship networks of scholars and countries (Gephi) and density maps (VOSviewer) of research topics co-occurrence and journal cocitation. Research output increased overall at a yearly rate of 18.65%. While medicine is the main field of research, studies in more specialised areas include biochemistry and pharmacology. Researchers from UK, USA and Spanish institutions have published the most papers. Most of the journals that publish this type of research and most cited papers come from UK and USA. Authorship varied between 3 and 6 authors. Keyword analyses show that smoking, diabetes, cardiovascular diseases and mental illnesses, as well as medication that can treat such medical conditions, such as non-steroid anti-inflammatory agents, insulin and antidepressants constitute the main topics of research. Coauthorship network analyses show that lead scientists, directors or founders of these databases are, to various degrees, at the centre of clusters in this scientific community. There is a considerable increase of publications in primary care research from EHRs. The UK has been well placed at the centre of an expanding global scientific community, facilitating international collaborations and bringing together international expertise in medicine, biochemical and pharmaceutical research. Published by the BMJ Publishing Group Limited. For permission to use (where not already granted under a licence) please go to http://www.bmj.com/company/products-services/rights-and-licensing/.

  18. Changing Authorship Patterns and Publishing Habits in the European Journal of Pediatric Surgery: A 10-Year Analysis.

    Science.gov (United States)

    Pintér, András

    2015-08-01

    The aim of this study is an analysis of the changing authorship patterns and publishing habits encountered in papers published in the European Journal of Pediatric Surgery (EJPS) over the past 10 years. Furthermore, it seeks to anticipate the trends in the years ahead. We conducted a retrospective review of articles published in the EJPS during a 10-year period (January 1, 2003-December 31, 2012). Each article was classified as an Original Report/Original Article (OR/OA) or as a Case Report/Case Gallery (CR/CG), and they were analyzed separately. For investigation of the percentage distribution of publications according to the number of authors per articles, papers were combined and into three groups (1-2, 3-5, and 6 ≤ authors). The analysis focused on whether the work was done by members of one institution, or in collaboration with other units of the same institution, or in collaboration with other national or multinational institutes. In the past 10 years, the EJPS published 996 articles (616 ORs/OAs, 380 CRs/CGs). The one and two authored publications (125) have not decreased, the three to five authored articles (552) changed minimally, whereas the number of 6 ≤ authored publications (319) has increased. Of 996 publications, 348 were from single institutes and 648 were written in collaboration with two or more other institutes. In addition, in this 10-year period, the number of multinational articles has increased significantly from 24 to 59. Increase in cooperation within and between institutions is a positive trend, aiming with the goal of improving quality of publications. Georg Thieme Verlag KG Stuttgart · New York.

  19. Reconstructing Faculty Roles to Align with Self-Authorship Development: The Gentle Art of Stepping Back

    Science.gov (United States)

    Day, Deborah A.; Lane, Terry

    2014-01-01

    Student development has connections to important academic purposes in higher education (King, Baxter Magolda, Barber, Kendall Brown & Lindsay, 2009). In particular, a growing body of work on self-authorship, a social-constructive theory of development, has demonstrated relevance to the purposes of higher education (Baxter Magolda, 2001; King…

  20. Networked Identities

    DEFF Research Database (Denmark)

    Ryberg, Thomas; Larsen, Malene Charlotte

    2008-01-01

    of CoPs we shall argue that the metaphor or theory of networked learning is itself confronted with some central tensions and challenges that need to be addressed. We then explore these theoretical and analytic challenges to the network metaphor, through an analysis of a Danish social networking site. We......In this article we take up a critique of the concept of Communities of Practice (CoP) voiced by several authors, who suggest that networks may provide a better metaphor to understand social forms of organisation and learning. Through a discussion of the notion of networked learning and the critique...... argue that understanding meaning-making and ‘networked identities’ may be relevant analytic entry points in navigating the challenges....

  1. Networks and network analysis for defence and security

    CERN Document Server

    Masys, Anthony J

    2014-01-01

    Networks and Network Analysis for Defence and Security discusses relevant theoretical frameworks and applications of network analysis in support of the defence and security domains. This book details real world applications of network analysis to support defence and security. Shocks to regional, national and global systems stemming from natural hazards, acts of armed violence, terrorism and serious and organized crime have significant defence and security implications. Today, nations face an uncertain and complex security landscape in which threats impact/target the physical, social, economic

  2. International network non-energy use and CO2 emissions (NEU-CO2). An activity within the European Commission's ENRICH programme, DG RTD, 'Environment and Climate'. Final report of the first phase of the network (January 1999 - June 2000)

    International Nuclear Information System (INIS)

    Patel, M.; Gielen, D.; Kilde, N.; Simmons, T.

    2000-07-01

    This report concludes the first phase of the NEU-CO 2 network, covering the period from January 1999 to June 2000. Within this period, two workshops were held, one in Paris in September 1999 and the other in Brussels in April 2000. The results of these workshops represent the basis of this report. The workshop papers have also been compiled in workshop proceedings which are publicly available. Due to the success of the NEU-CO 2 network, the partners decided to apply for the continuation of this activity which was recently accepted by the European Commission. The second phase of the of the NEU-CO 2 network will start in Fall 2000 and will continue for 18 months. This will allow the NEU-CO 2 network to improve the methods applied, to close data gaps, to check the preliminary conclusions given in this report and to provide consolidated results and recommendations by mid 2002. The ultimate goal of the NEU-CO 2 network is to contribute to an improvement of the IPCC guidelines in the area of non-energy use and to provide inventorists with tools and methods to estimate more accurately non-energy CO 2 emissions. (orig.)

  3. Data mining of text as a tool in authorship attribution

    Science.gov (United States)

    Visa, Ari J. E.; Toivonen, Jarmo; Autio, Sami; Maekinen, Jarno; Back, Barbro; Vanharanta, Hannu

    2001-03-01

    It is common that text documents are characterized and classified by keywords that the authors use to give them. Visa et al. have developed a new methodology based on prototype matching. The prototype is an interesting document or a part of an extracted, interesting text. This prototype is matched with the document database of the monitored document flow. The new methodology is capable of extracting the meaning of the document in a certain degree. Our claim is that the new methodology is also capable of authenticating the authorship. To verify this claim two tests were designed. The test hypothesis was that the words and the word order in the sentences could authenticate the author. In the first test three authors were selected. The selected authors were William Shakespeare, Edgar Allan Poe, and George Bernard Shaw. Three texts from each author were examined. Every text was one by one used as a prototype. The two nearest matches with the prototype were noted. The second test uses the Reuters-21578 financial news database. A group of 25 short financial news reports from five different authors are examined. Our new methodology and the interesting results from the two tests are reported in this paper. In the first test, for Shakespeare and for Poe all cases were successful. For Shaw one text was confused with Poe. In the second test the Reuters-21578 financial news were identified by the author relatively well. The resolution is that our text mining methodology seems to be capable of authorship attribution.

  4. The author who wasn't there? Fairness and attribution in publications following access to population biobanks.

    Science.gov (United States)

    Kleiderman, Erika; Pack, Amy; Borry, Pascal; Zawati, Ma'n

    2018-01-01

    We conducted a document analysis that explored publication ethics and authorship in the context of population biobanks from both a theoretical (e.g. normative documents) and practical (e.g. biobank-specific documentation) perspective. The aim was to provide an overview of the state of authorship attribution in population biobanks and attempt to fill the gap in discussions around the issue. Our findings demonstrate that the most common approach adopted in both the normative and biobank-specific documentation is acknowledgment. A co-authorship approach was second and highlighted concerns surrounding the fairness of imposing authorship of the scientific leadership as a condition to access data and biosamples, as well as the alignment with the International Committee of Medical Journal Editors' criteria such as what is deemed a significant contribution and how to ensure accountability. Based on these findings, we propose a three-prong approach, that may be cumulative, to address the issue of authorship attribution in the context of population biobanks, namely 1) the biobank should be appropriately acknowledged; 2) an invitation for co-authorship should be made based on the spirit of collaboration and provided a substantial contribution has been made; and 3) a citation/referencing option should be available.

  5. A Multi-Tier Social-Ecological System Analysis of Protected Areas Co-Management in Belize

    Directory of Open Access Journals (Sweden)

    Kenrick W. Williams

    2016-01-01

    Full Text Available Co-management of protected areas has been recognized as a viable option to sustainably manage ecosystems. This collaborative approach actively engages civil society in the protected areas governance processes. Attempts at co-management, however, have not been uniformly successful; whereas the governance of some initiatives succeed and become strong and sustainable, others become weak or fail over time. In this paper, we provide a nuanced application of Ostrom’s multi-tier SES framework to carry out a systematic analysis of representative cases of co-management in Belize. This novel approach allows us to avoid the common problem of overstating the explanatory power of individual variables, while enabling us to tease out the interrelationships among critical process and contextual variables that may influence co-management outcomes. Our findings show that strong co-management is associated with a multiplicity of variables, including information sharing, conflict resolution, investments, self-organization, and networking. Contextual conditions inclusive of strong leadership, social capital, and high levels of dependence on resources for daily livelihoods seem to have influenced these processes over time. The presence of cross-scale and cross-level networks also seems to be important in influencing co-management outcomes. Our study contributes to the further development of Ostrom’s multi-tier SES framework by proposing the addition of five new third-tier variables. We advance some key lessons in the analysis of co-management outcomes and offer some policy recommendations to improve protected areas co-management policy and practice in Belize.

  6. Redes de colaboração científica na área de química no Brasil: um estudo baseado nas coautorias dos artigos da revista Química Nova

    Directory of Open Access Journals (Sweden)

    Cristina Gomes de Souza

    2012-01-01

    Full Text Available In this paper we built three co-authorship networks displaying the acquaintances between countries, universities and authors that have published papers in Quimica Nova from 1995 to 2008. Our research was conducted applying a bibliometric approach to 1782 papers and over 4200 authors. Centrality measures were used and the most significant actors of each network were pointed out. The results using the centrality metrics and the network structures indicated that Quimica Nova resembles a typical scientific community.

  7. ICan: an integrated co-alteration network to identify ovarian cancer-related genes.

    Science.gov (United States)

    Zhou, Yuanshuai; Liu, Yongjing; Li, Kening; Zhang, Rui; Qiu, Fujun; Zhao, Ning; Xu, Yan

    2015-01-01

    Over the last decade, an increasing number of integrative studies on cancer-related genes have been published. Integrative analyses aim to overcome the limitation of a single data type, and provide a more complete view of carcinogenesis. The vast majority of these studies used sample-matched data of gene expression and copy number to investigate the impact of copy number alteration on gene expression, and to predict and prioritize candidate oncogenes and tumor suppressor genes. However, correlations between genes were neglected in these studies. Our work aimed to evaluate the co-alteration of copy number, methylation and expression, allowing us to identify cancer-related genes and essential functional modules in cancer. We built the Integrated Co-alteration network (ICan) based on multi-omics data, and analyzed the network to uncover cancer-related genes. After comparison with random networks, we identified 155 ovarian cancer-related genes, including well-known (TP53, BRCA1, RB1 and PTEN) and also novel cancer-related genes, such as PDPN and EphA2. We compared the results with a conventional method: CNAmet, and obtained a significantly better area under the curve value (ICan: 0.8179, CNAmet: 0.5183). In this paper, we describe a framework to find cancer-related genes based on an Integrated Co-alteration network. Our results proved that ICan could precisely identify candidate cancer genes and provide increased mechanistic understanding of carcinogenesis. This work suggested a new research direction for biological network analyses involving multi-omics data.

  8. Hi-C Chromatin Interaction Networks Predict Co-expression in the Mouse Cortex

    Science.gov (United States)

    Hulsman, Marc; Lelieveldt, Boudewijn P. F.; de Ridder, Jeroen; Reinders, Marcel

    2015-01-01

    The three dimensional conformation of the genome in the cell nucleus influences important biological processes such as gene expression regulation. Recent studies have shown a strong correlation between chromatin interactions and gene co-expression. However, predicting gene co-expression from frequent long-range chromatin interactions remains challenging. We address this by characterizing the topology of the cortical chromatin interaction network using scale-aware topological measures. We demonstrate that based on these characterizations it is possible to accurately predict spatial co-expression between genes in the mouse cortex. Consistent with previous findings, we find that the chromatin interaction profile of a gene-pair is a good predictor of their spatial co-expression. However, the accuracy of the prediction can be substantially improved when chromatin interactions are described using scale-aware topological measures of the multi-resolution chromatin interaction network. We conclude that, for co-expression prediction, it is necessary to take into account different levels of chromatin interactions ranging from direct interaction between genes (i.e. small-scale) to chromatin compartment interactions (i.e. large-scale). PMID:25965262

  9. Leveraging value in multi-stakeholder innovation networks: A process framework for value co-creation and capture

    NARCIS (Netherlands)

    Reypens, C.; Lievens, A.; Blazevic, V.

    2016-01-01

    To develop innovative solutions for complex societal and scientific challenges, organizations need to move beyond the boundaries of single firms and engage in collaborative networks. In these networks, multiple, diverse stakeholders are working together to co-create innovative value. Co-creation in

  10. A bibliometric analysis assessing temporal changes in publication and authorship characteristics in The Knee from 1996 to 2016.

    Science.gov (United States)

    Sheridan, G; Wisken, E; Hing, C B; Smith, T O

    2018-03-01

    Evidence-based practice is a foundation to clinical excellence. However there remains little evidence on the characteristics of authors who contribute to the evidence-base and whether these have changed over time. The purpose of this study was to explore these characteristics by undertaking a bibliometric analysis to explore publication and authorship characteristics in a leading sub-speciality orthopaedic journal (The Knee) over a 20-year period. All articles published in The Knee in 1996, 2006 and 2016 were identified. For each article, data collected included: highest academic award; profession; gender; continent of first and last author; total number of authors; the level of evidence; and funding source. We analysed temporal changes in these variables using appropriate statistical models. A total of 413 papers were analysed. Between 1996 to 2016 there has been a significant increase in the overall number of authors, the number of paper submitted from Asia, the proportion of Level 1 or 2 tiered evidence, the proportion of people with Bachelor or Master-level degrees as their highest level of educational award and the proportion of non-medically qualified authors (Pauthorship characteristics in this sub-speciality orthopaedic journal during the past 20years. This provides encouraging indication of greater diversification and internationalisation of orthopaedic research. Copyright © 2018 Elsevier B.V. All rights reserved.

  11. Co-Citation Analysis of Articles Published in Substance Abuse Journals: Intellectual Structure and Research Fields (2001-2012).

    Science.gov (United States)

    González-Alcaide, Gregorio; Calafat, Amador; Becoña, Elisardo; Thijs, Bart; Glänzel, Wolfgang

    2016-09-01

    The purpose of this study is to introduce a new methodology in the field of substance abuse, namely, co-citation analysis, which uses the bibliographic references of publications to establish the main thematic areas being researched and to identify the seminal documents that have contributed to establishing the intellectual foundation of the discipline at the present time. We identified all bibliographic references that were cited in documents published in the substance abuse journals included in the Journal Citation Reports in the 2001-2012 period, generating a co-citation matrix. This matrix was used to perform a co-citation network analysis. The co-citation network analysis led to the identification of 56 prominent research clusters that bring together 698 documents; their subject matter constitutes the foundation of the discipline in the field's journals. Substance abuse research is dominated by a few core topics; chief among them are tools for measuring and diagnosing dependence, as well as therapeutic approaches to treat alcohol abuse and nicotine addiction. Other areas of note include epidemiological studies, research on drug user motivation (particularly among young people), binge drinking, social support mediators and networks, opioid dependence, consumption and effects of cannabis, basic research on brain damage, genetic factors associated with substance use, and the physiological and neurological determinants of abstinence syndrome. The main works of reference that we identified were published in a small number of journals, which establish the intellectual, conceptual, and methodological basis of the discipline.

  12. The gender imbalance in academic medicine: a study of female authorship in the United Kingdom.

    Science.gov (United States)

    Sidhu, Reena; Rajashekhar, Praveen; Lavin, Victoria L; Parry, Joanne; Attwood, James; Holdcroft, Anita; Sanders, David S

    2009-08-01

    A shortfall exists of female doctors in senior academic posts in the United Kingdom. Career progression depends on measures of esteem, including publication in prestigious journals. This study investigates gender differences in first and senior authorship in six peer-reviewed British journals and factors that are associated with publication rates. Data was collected on United Kingdom first and senior authors who had published in the British Medical Journal, Lancet, British Journal of Surgery, Gut, British Journal of Obstetrics and Gynaecology and the Archives of Diseases in Childhood. Authorship and gender were quantified for 1970, 1980, 1990, 2000 and 2004 (n=6457). In addition, selected questions from the Athena Survey of Science Engineering and Technology (ASSET2006), web-based doctor's self-report of publications were also analysed (n=1162). Female first authors increased from 10.5% in 1970 to 36.5% in 2004 (p<0.001) while female senior authors only increased from 12.3% to 16.5% (p=0.046). Within individual journals, the largest rise was in British Journal of Obstetric and Gynaecology with 4.5- and 3-fold increases for first and senior authors, respectively. In contrast, female senior authors marginally declined in Gut and Lancet by 2.8% and 2.2%, respectively. ASSET2006 identified that female respondents who were parents were less likely to have publications as sole (p=0.02) and joint authors (p<0.001) compared to male respondents. Female respondents with care responsibilities for parents/partner also had less publications as lead authors compared to those without carer responsibilities (p<0.001). The increase in UK female first authors is encouraging. In contrast, there is considerable lag and in some specialties a decline in female senior authors. Factors that could narrow the gender gap in authorship should be sought and addressed.

  13. Design and analysis of heat exchanger networks for integrated Ca-looping systems

    International Nuclear Information System (INIS)

    Lara, Yolanda; Lisbona, Pilar; Martínez, Ana; Romeo, Luis M.

    2013-01-01

    Highlights: • Heat integration is essential to minimize energy penalties in calcium looping cycles. • A design and analysis of four heat exchanger networks is stated. • New design with higher power, lower costs and lower destroyed exergy than base case. - Abstract: One of the main challenges of carbon capture and storage technologies deals with the energy penalty associated with CO 2 separation and compression processes. Thus, heat integration plays an essential role in the improvement of these systems’ efficiencies. CO 2 capture systems based on Ca-looping process present a great potential for residual heat integration with a new supercritical power plant. The pinch methodology is applied in this study to define the minimum energy requirements of the process and to design four configurations for the required heat exchanger network. The Second Law of Thermodynamics represents a powerful tool for reducing the energy demand since identifying the exergy losses of the system serves to allocate inefficiencies. In parallel, an economic analysis is required to asses the cost reduction achieved by each configuration. This work presents a combination of pinch methodology with economic and exergetic analyses to select the more appropriate configuration of heat exchanger network. The lower costs and minor destroyed exergy obtained for the best proposed network result in a of 0.91% global energy efficiency increase

  14. Formal Models of the Network Co-occurrence Underlying Mental Operations.

    Science.gov (United States)

    Bzdok, Danilo; Varoquaux, Gaël; Grisel, Olivier; Eickenberg, Michael; Poupon, Cyril; Thirion, Bertrand

    2016-06-01

    Systems neuroscience has identified a set of canonical large-scale networks in humans. These have predominantly been characterized by resting-state analyses of the task-unconstrained, mind-wandering brain. Their explicit relationship to defined task performance is largely unknown and remains challenging. The present work contributes a multivariate statistical learning approach that can extract the major brain networks and quantify their configuration during various psychological tasks. The method is validated in two extensive datasets (n = 500 and n = 81) by model-based generation of synthetic activity maps from recombination of shared network topographies. To study a use case, we formally revisited the poorly understood difference between neural activity underlying idling versus goal-directed behavior. We demonstrate that task-specific neural activity patterns can be explained by plausible combinations of resting-state networks. The possibility of decomposing a mental task into the relative contributions of major brain networks, the "network co-occurrence architecture" of a given task, opens an alternative access to the neural substrates of human cognition.

  15. On authorship in Samuel Beckett’s prose

    Directory of Open Access Journals (Sweden)

    Willian André

    2014-06-01

    Full Text Available This study aims at building a reflection on the notion of authorship in Samuel Beckett’s work, with a main focus on his short prose from the 60s and 70s. Thereunto, supported by the writings of Maurice Blanchot, S. E. Gontarski, João Adolfo Hansen and Hugh Kenner, we draw a route that starts with the Beckettian post-war trilogy, going through the subsequent productions that culminate in the short pieces outlined by the author after the publishing of How It Is (1961. As we take the path run by the Irish writer in his deal with failure (a path full of mud and light-grey-dark oscillations, we experience the rise of a paradoxical impression: the more severe are Beckett’s attacks against the shapes of the I, testifying the dilution of identity, more accurate become the shapes surrounding the idea of “author” that surmounts the whole of his literary project.

  16. Network Analysis Tools: from biological networks to clusters and pathways.

    Science.gov (United States)

    Brohée, Sylvain; Faust, Karoline; Lima-Mendez, Gipsi; Vanderstocken, Gilles; van Helden, Jacques

    2008-01-01

    Network Analysis Tools (NeAT) is a suite of computer tools that integrate various algorithms for the analysis of biological networks: comparison between graphs, between clusters, or between graphs and clusters; network randomization; analysis of degree distribution; network-based clustering and path finding. The tools are interconnected to enable a stepwise analysis of the network through a complete analytical workflow. In this protocol, we present a typical case of utilization, where the tasks above are combined to decipher a protein-protein interaction network retrieved from the STRING database. The results returned by NeAT are typically subnetworks, networks enriched with additional information (i.e., clusters or paths) or tables displaying statistics. Typical networks comprising several thousands of nodes and arcs can be analyzed within a few minutes. The complete protocol can be read and executed in approximately 1 h.

  17. Asymmetric network connectivity using weighted harmonic averages

    Science.gov (United States)

    Morrison, Greg; Mahadevan, L.

    2011-02-01

    We propose a non-metric measure of the "closeness" felt between two nodes in an undirected, weighted graph using a simple weighted harmonic average of connectivity, that is a real-valued Generalized Erdös Number (GEN). While our measure is developed with a collaborative network in mind, the approach can be of use in a variety of artificial and real-world networks. We are able to distinguish between network topologies that standard distance metrics view as identical, and use our measure to study some simple analytically tractable networks. We show how this might be used to look at asymmetry in authorship networks such as those that inspired the integer Erdös numbers in mathematical coauthorships. We also show the utility of our approach to devise a ratings scheme that we apply to the data from the NetFlix prize, and find a significant improvement using our method over a baseline.

  18. Bibliometric Analyses Reveal Patterns of Collaboration between ASMS Members

    Science.gov (United States)

    Palmblad, Magnus; van Eck, Nees Jan

    2018-03-01

    We have explored the collaborative network of the current American Society for Mass Spectrometry (ASMS) membership using bibliometric methods. The analysis shows that 4249 members are connected in a single, large, co-authorship graph, including the majority of the most published authors in the field of mass spectrometry. The map reveals topographical differences between university groups and national laboratories, and that the co-authors with the strongest links have long worked together at the same location. We have collected and summarized information on the geographical distribution of members, showing a high coverage of active researchers in North America and Western Europe. Looking at research fields, we could also identify a number of new or `hot' topics among ASMS members. Interactive versions of the maps are available on-line at https://goo.gl/UBNFMQ (collaborative network) and https://goo.gl/WV25vm (research topics). [Figure not available: see fulltext.

  19. Scientific production of the Radioprotection and Dosimetry Institute (IRD): preliminary bibliometric evaluation of the journal articles; Producao cientifica do Instituto de Radioprotecao e Dosimetria (IRD): avaliacao bibliometrica preliminar dos artigos de periodicos

    Energy Technology Data Exchange (ETDEWEB)

    Gusmao Pedrini, A de [Instituto de Radioprotecao e Dosimetria (IRD), Rio de Janeiro, RJ (Brazil); [Universidade do Estado, Rio de Janeiro, RJ (Brazil). Inst. de Biologia; [Universidade Santa Ursula, Rio de Janeiro, RJ (Brazil). Centro de Ciencias Biologicas

    1994-12-31

    A total of 114 articles (1974-1991, this last year the most productive) in 28 periodicals were published. The periodical core production is made up of: Health Physics, Radiation Protection Dosimetry, Radioprotecao e Dosimetria, Radiologia Brasileira. 53% were written in cooperation with 33 institutions. The 155 authors and 376 authorship were mainly in collective and triple-authorship articles. Mean productivity/author was 2.8 articles which is lower than that of Price. The most productivity author produced 14 articles + 19 co-authors in 7 periodicals on environmental radiation protection while 88 authors produced 1 article. The productive elite (12 authors) accounted for 72 articles, 26% above the average according to Lotka, with 111 out of a total of 376 authorships in 20 periodicals. The elite forms an inter departmental communication network with authors who write about environmental, occupational and individual radiation protection. (author). 17 refs, 1 tab.

  20. Scientific production of the Radioprotection and Dosimetry Institute (IRD): preliminary bibliometric evaluation of the journal articles

    International Nuclear Information System (INIS)

    Gusmao Pedrini, A. de; Universidade do Estado, Rio de Janeiro, RJ; Universidade Santa Ursula, Rio de Janeiro, RJ

    1994-01-01

    A total of 114 articles (1974-1991, this last year the most productive) in 28 periodicals were published. The periodical core production is made up of: Health Physics, Radiation Protection Dosimetry, Radioprotecao e Dosimetria, Radiologia Brasileira. 53% were written in cooperation with 33 institutions. The 155 authors and 376 authorship were mainly in collective and triple-authorship articles. Mean productivity/author was 2.8 articles which is lower than that of Price. The most productivity author produced 14 articles + 19 co-authors in 7 periodicals on environmental radiation protection while 88 authors produced 1 article. The productive elite (12 authors) accounted for 72 articles, 26% above the average according to Lotka, with 111 out of a total of 376 authorships in 20 periodicals. The elite forms an inter departmental communication network with authors who write about environmental, occupational and individual radiation protection. (author). 17 refs, 1 tab

  1. Examining the articulation of innovativeness in co-creative firms: a neural network approach

    Science.gov (United States)

    di Tollo, Giacomo; Tanev, Stoyan

    2011-03-01

    Value co-creation is an emerging marketing and innovation paradigm describing a broader opening of the firm to its customers by providing them with the opportunity to become active participants in the design and development of personalized products, services and experiences. The aim of the present contribution is to provide preliminary results from a research project focusing on the relationship between value co-creation and the perception of innovation in technology-driven firms. The data was collected in a previous study using web search techniques and factor analysis to identify the key co-creation components and the frequency of firms' online comments about their new products, processes and services. The present work focuses on using an Artificial Neural Network (ANN) approach to understand if the extent of value co-creation activities can be thought of as an indicator of the perception of innovation. The preliminary simulation results indicate the existence of such relationship. The ANN approach does not suggest a specific model but the relationship that was found out between the forecasted values of the perception of innovation and its actual values clearly points in this direction.

  2. Ecological network analysis for a virtual water network.

    Science.gov (United States)

    Fang, Delin; Chen, Bin

    2015-06-02

    The notions of virtual water flows provide important indicators to manifest the water consumption and allocation between different sectors via product transactions. However, the configuration of virtual water network (VWN) still needs further investigation to identify the water interdependency among different sectors as well as the network efficiency and stability in a socio-economic system. Ecological network analysis is chosen as a useful tool to examine the structure and function of VWN and the interactions among its sectors. A balance analysis of efficiency and redundancy is also conducted to describe the robustness (RVWN) of VWN. Then, network control analysis and network utility analysis are performed to investigate the dominant sectors and pathways for virtual water circulation and the mutual relationships between pairwise sectors. A case study of the Heihe River Basin in China shows that the balance between efficiency and redundancy is situated on the left side of the robustness curve with less efficiency and higher redundancy. The forestation, herding and fishing sectors and industrial sectors are found to be the main controllers. The network tends to be more mutualistic and synergic, though some competitive relationships that weaken the virtual water circulation still exist.

  3. Sulfonate-grafted porous polymer networks for preferential CO(2) adsorption at low pressure

    NARCIS (Netherlands)

    Lu, W.; Yuan, D.; Sculley, J.; Zhao, D.; Krishna, R.; Zhou, H.-C.

    2011-01-01

    A porous polymer network (PPN) grafted with sulfonic acid (PPN-6-SO3H) and its lithium salt (PPN-6-SO3Li) exhibit significant increases in isosteric heats of CO2 adsorption and CO2-uptake capacities. IAST calculations using single-component-isotherm data and a 15/85 CO2/N2 ratio at 295 K and 1 bar

  4. Gene Co-expression Analysis to Characterize Genes Related to Marbling Trait in Hanwoo (Korean) Cattle.

    Science.gov (United States)

    Lim, Dajeong; Lee, Seung-Hwan; Kim, Nam-Kuk; Cho, Yong-Min; Chai, Han-Ha; Seong, Hwan-Hoo; Kim, Heebal

    2013-01-01

    Marbling (intramuscular fat) is an important trait that affects meat quality and is a casual factor determining the price of beef in the Korean beef market. It is a complex trait and has many biological pathways related to muscle and fat. There is a need to identify functional modules or genes related to marbling traits and investigate their relationships through a weighted gene co-expression network analysis based on the system level. Therefore, we investigated the co-expression relationships of genes related to the 'marbling score' trait and systemically analyzed the network topology in Hanwoo (Korean cattle). As a result, we determined 3 modules (gene groups) that showed statistically significant results for marbling score. In particular, one module (denoted as red) has a statistically significant result for marbling score (p = 0.008) and intramuscular fat (p = 0.02) and water capacity (p = 0.006). From functional enrichment and relationship analysis of the red module, the pathway hub genes (IL6, CHRNE, RB1, INHBA and NPPA) have a direct interaction relationship and share the biological functions related to fat or muscle, such as adipogenesis or muscle growth. This is the first gene network study with m.logissimus in Hanwoo to observe co-expression patterns in divergent marbling phenotypes. It may provide insights into the functional mechanisms of the marbling trait.

  5. Gene Co-expression Analysis to Characterize Genes Related to Marbling Trait in Hanwoo (Korean Cattle

    Directory of Open Access Journals (Sweden)

    Dajeong Lim

    2013-01-01

    Full Text Available Marbling (intramuscular fat is an important trait that affects meat quality and is a casual factor determining the price of beef in the Korean beef market. It is a complex trait and has many biological pathways related to muscle and fat. There is a need to identify functional modules or genes related to marbling traits and investigate their relationships through a weighted gene co-expression network analysis based on the system level. Therefore, we investigated the co-expression relationships of genes related to the ‘marbling score’ trait and systemically analyzed the network topology in Hanwoo (Korean cattle. As a result, we determined 3 modules (gene groups that showed statistically significant results for marbling score. In particular, one module (denoted as red has a statistically significant result for marbling score (p = 0.008 and intramuscular fat (p = 0.02 and water capacity (p = 0.006. From functional enrichment and relationship analysis of the red module, the pathway hub genes (IL6, CHRNE, RB1, INHBA and NPPA have a direct interaction relationship and share the biological functions related to fat or muscle, such as adipogenesis or muscle growth. This is the first gene network study with m.logissimus in Hanwoo to observe co-expression patterns in divergent marbling phenotypes. It may provide insights into the functional mechanisms of the marbling trait.

  6. Contemporary psychology and women: A gender analysis of the scientific production.

    Science.gov (United States)

    González-Álvarez, Julio; Cervera-Crespo, Teresa

    2017-05-15

    Despite important advances made in recent decades, women are still underrepresented in science (less than 30% of authorships). This study presents a bibliometric analysis of all the Psychology articles published in 2009 included in the Web of Science database (Thomson Reuters) in order to examine the contribution of women in contemporary Psychology, their pattern of research collaboration, the scientific content and the scientific impact from a gender perspective. From a total of 90,067 authorships, gender could be identified in 74,413 (82.6%) of them, being 40,782 (54.8%) male authorships and 33,631 (45.2%) female authorships. These data corresponded to 24,477 (49.9%) individual men and 24,553 (50.1%) women, respectively. Therefore, Psychology presents gender parity in the number of authors, and a gender asymmetry in the number of authorships that it is much lower than in science in general and other specific scientific fields. In relative terms, women tend to be concentrated in the first position of the authorship by-line and much less in the last (senior) position. This double pattern suggests that age probably plays a role in (partly) explaining the slight gender disparity of authorships. © 2017 International Union of Psychological Science.

  7. Trends in Female Authorships, Editorial Board Memberships, and Editorships in Educational Psychology Journals from 2003 to 2008

    Science.gov (United States)

    Fong, Carlton J.; Yoo, Julia H.; Jones, Sara J.; Torres, Laura G.; Decker, Mark Lowry

    2009-01-01

    Robinson, McKay, Katayama, and Fan ("Contemporary Educational Psychology," 23, 331-343, 1998) reported that women were underrepresented in terms of authorships, editorial board memberships, and editorships in the field of educational psychology based on membership trends. More recently, Evans, Hsieh, and Robinson ("Educational Psychology Review,"…

  8. Social network analysis applied to team sports analysis

    CERN Document Server

    Clemente, Filipe Manuel; Mendes, Rui Sousa

    2016-01-01

    Explaining how graph theory and social network analysis can be applied to team sports analysis, This book presents useful approaches, models and methods that can be used to characterise the overall properties of team networks and identify the prominence of each team player. Exploring the different possible network metrics that can be utilised in sports analysis, their possible applications and variances from situation to situation, the respective chapters present an array of illustrative case studies. Identifying the general concepts of social network analysis and network centrality metrics, readers are shown how to generate a methodological protocol for data collection. As such, the book provides a valuable resource for students of the sport sciences, sports engineering, applied computation and the social sciences.

  9. The co-evolutionary dynamics of directed network of spin market agents

    Science.gov (United States)

    Horváth, Denis; Kuscsik, Zoltán; Gmitra, Martin

    2006-09-01

    The spin market model [S. Bornholdt, Int. J. Mod. Phys. C 12 (2001) 667] is generalized by employing co-evolutionary principles, where strategies of the interacting and competitive traders are represented by local and global couplings between the nodes of dynamic directed stochastic network. The co-evolutionary principles are applied in the frame of Bak-Sneppen self-organized dynamics [P. Bak, K. Sneppen, Phys. Rev. Lett. 71 (1993) 4083] that includes the processes of selection and extinction actuated by the local (node) fitness. The local fitness is related to orientation of spin agent with respect to the instant magnetization. The stationary regime is formed due to the interplay of self-organization and adaptivity effects. The fat tailed distributions of log-price returns are identified numerically. The non-trivial model consequence is the evidence of the long time market memory indicated by the power-law range of the autocorrelation function of volatility with exponent smaller than one. The simulations yield network topology with broad-scale node degree distribution characterized by the range of exponents 1.3social networks.

  10. Formal Models of the Network Co-occurrence Underlying Mental Operations.

    Directory of Open Access Journals (Sweden)

    Danilo Bzdok

    2016-06-01

    Full Text Available Systems neuroscience has identified a set of canonical large-scale networks in humans. These have predominantly been characterized by resting-state analyses of the task-unconstrained, mind-wandering brain. Their explicit relationship to defined task performance is largely unknown and remains challenging. The present work contributes a multivariate statistical learning approach that can extract the major brain networks and quantify their configuration during various psychological tasks. The method is validated in two extensive datasets (n = 500 and n = 81 by model-based generation of synthetic activity maps from recombination of shared network topographies. To study a use case, we formally revisited the poorly understood difference between neural activity underlying idling versus goal-directed behavior. We demonstrate that task-specific neural activity patterns can be explained by plausible combinations of resting-state networks. The possibility of decomposing a mental task into the relative contributions of major brain networks, the "network co-occurrence architecture" of a given task, opens an alternative access to the neural substrates of human cognition.

  11. Novel keyword co-occurrence network-based methods to foster systematic reviews of scientific literature.

    Science.gov (United States)

    Radhakrishnan, Srinivasan; Erbis, Serkan; Isaacs, Jacqueline A; Kamarthi, Sagar

    2017-01-01

    Systematic reviews of scientific literature are important for mapping the existing state of research and highlighting further growth channels in a field of study, but systematic reviews are inherently tedious, time consuming, and manual in nature. In recent years, keyword co-occurrence networks (KCNs) are exploited for knowledge mapping. In a KCN, each keyword is represented as a node and each co-occurrence of a pair of words is represented as a link. The number of times that a pair of words co-occurs in multiple articles constitutes the weight of the link connecting the pair. The network constructed in this manner represents cumulative knowledge of a domain and helps to uncover meaningful knowledge components and insights based on the patterns and strength of links between keywords that appear in the literature. In this work, we propose a KCN-based approach that can be implemented prior to undertaking a systematic review to guide and accelerate the review process. The novelty of this method lies in the new metrics used for statistical analysis of a KCN that differ from those typically used for KCN analysis. The approach is demonstrated through its application to nano-related Environmental, Health, and Safety (EHS) risk literature. The KCN approach identified the knowledge components, knowledge structure, and research trends that match with those discovered through a traditional systematic review of the nanoEHS field. Because KCN-based analyses can be conducted more quickly to explore a vast amount of literature, this method can provide a knowledge map and insights prior to undertaking a rigorous traditional systematic review. This two-step approach can significantly reduce the effort and time required for a traditional systematic literature review. The proposed KCN-based pre-systematic review method is universal. It can be applied to any scientific field of study to prepare a knowledge map.

  12. An Update on the Scholarly Networks on Resilience, Vulnerability, and Adaptation within the Human Dimensions of Global Environmental Change

    Directory of Open Access Journals (Sweden)

    Marco A. Janssen

    2007-12-01

    Full Text Available In Janssen et al. (2006, we presented a bibliometric analysis of the resilience, vulnerability, and adaptation knowledge domains within the research activities on human dimensions of global environmental change. We have updated the analysis because 2 years have gone by since the original analysis, and 1113 more publications can now be added to the database. We analyzed how the resulting 3399 publications between 1967 and 2007 are related in terms of co-authorship and citations. The rapid increase in the number of publications in the three knowledge domains continued over the last 2 years, and we still see an overlap between the knowledge domains. We were also able to identify the "hot" publications of the last 2 years.

  13. Co-Ethnic Network, Social Class, and Heritage Language Maintenance among Chinese Immigrant Families

    Science.gov (United States)

    Zhang, Donghui

    2012-01-01

    This ethnographic study investigated heritage language maintenance among two distinct groups of Chinese immigrant families (Mandarin and Fujianese) from the social network perspective. The results indicated that a co-ethnic network could be a double-edged sword, which works differently on children from different social classes. While the Mandarin…

  14. Multifractal analysis of complex networks

    International Nuclear Information System (INIS)

    Wang Dan-Ling; Yu Zu-Guo; Anh V

    2012-01-01

    Complex networks have recently attracted much attention in diverse areas of science and technology. Many networks such as the WWW and biological networks are known to display spatial heterogeneity which can be characterized by their fractal dimensions. Multifractal analysis is a useful way to systematically describe the spatial heterogeneity of both theoretical and experimental fractal patterns. In this paper, we introduce a new box-covering algorithm for multifractal analysis of complex networks. This algorithm is used to calculate the generalized fractal dimensions D q of some theoretical networks, namely scale-free networks, small world networks, and random networks, and one kind of real network, namely protein—protein interaction networks of different species. Our numerical results indicate the existence of multifractality in scale-free networks and protein—protein interaction networks, while the multifractal behavior is not clear-cut for small world networks and random networks. The possible variation of D q due to changes in the parameters of the theoretical network models is also discussed. (general)

  15. On the Compliance of Women Engineers with a Gendered Scientific System.

    Directory of Open Access Journals (Sweden)

    Gita Ghiasi

    Full Text Available There has been considerable effort in the last decade to increase the participation of women in engineering through various policies. However, there has been little empirical research on gender disparities in engineering which help underpin the effective preparation, co-ordination, and implementation of the science and technology (S&T policies. This article aims to present a comprehensive gendered analysis of engineering publications across different specialties and provide a cross-gender analysis of research output and scientific impact of engineering researchers in academic, governmental, and industrial sectors. For this purpose, 679,338 engineering articles published from 2008 to 2013 are extracted from the Web of Science database and 974,837 authorships are analyzed. The structures of co-authorship collaboration networks in different engineering disciplines are examined, highlighting the role of female scientists in the diffusion of knowledge. The findings reveal that men dominate 80% of all the scientific production in engineering. Women engineers publish their papers in journals with higher Impact Factors than their male peers, but their work receives lower recognition (fewer citations from the scientific community. Engineers-regardless of their gender-contribute to the reproduction of the male-dominated scientific structures through forming and repeating their collaborations predominantly with men. The results of this study call for integration of data driven gender-related policies in existing S&T discourse.

  16. On the Compliance of Women Engineers with a Gendered Scientific System.

    Science.gov (United States)

    Ghiasi, Gita; Larivière, Vincent; Sugimoto, Cassidy R

    2015-01-01

    There has been considerable effort in the last decade to increase the participation of women in engineering through various policies. However, there has been little empirical research on gender disparities in engineering which help underpin the effective preparation, co-ordination, and implementation of the science and technology (S&T) policies. This article aims to present a comprehensive gendered analysis of engineering publications across different specialties and provide a cross-gender analysis of research output and scientific impact of engineering researchers in academic, governmental, and industrial sectors. For this purpose, 679,338 engineering articles published from 2008 to 2013 are extracted from the Web of Science database and 974,837 authorships are analyzed. The structures of co-authorship collaboration networks in different engineering disciplines are examined, highlighting the role of female scientists in the diffusion of knowledge. The findings reveal that men dominate 80% of all the scientific production in engineering. Women engineers publish their papers in journals with higher Impact Factors than their male peers, but their work receives lower recognition (fewer citations) from the scientific community. Engineers-regardless of their gender-contribute to the reproduction of the male-dominated scientific structures through forming and repeating their collaborations predominantly with men. The results of this study call for integration of data driven gender-related policies in existing S&T discourse.

  17. Non-parametric co-clustering of large scale sparse bipartite networks on the GPU

    DEFF Research Database (Denmark)

    Hansen, Toke Jansen; Mørup, Morten; Hansen, Lars Kai

    2011-01-01

    of row and column clusters from a hypothesis space of an infinite number of clusters. To reach large scale applications of co-clustering we exploit that parameter inference for co-clustering is well suited for parallel computing. We develop a generic GPU framework for efficient inference on large scale...... sparse bipartite networks and achieve a speedup of two orders of magnitude compared to estimation based on conventional CPUs. In terms of scalability we find for networks with more than 100 million links that reliable inference can be achieved in less than an hour on a single GPU. To efficiently manage...

  18. Ecological network analysis: network construction

    NARCIS (Netherlands)

    Fath, B.D.; Scharler, U.M.; Ulanowicz, R.E.; Hannon, B.

    2007-01-01

    Ecological network analysis (ENA) is a systems-oriented methodology to analyze within system interactions used to identify holistic properties that are otherwise not evident from the direct observations. Like any analysis technique, the accuracy of the results is as good as the data available, but

  19. The Impact of Culture On Smart Community Technology: The Case of 13 Wikipedia Instances

    Directory of Open Access Journals (Sweden)

    Zinayida Petrushyna

    2014-11-01

    Full Text Available Smart communities provide technologies for monitoring social behaviors inside communities. The technologies that support knowledge building should consider the cultural background of community members. The studies of the influence of the culture on knowledge building is limited. Just a few works consider digital traces of individuals that they explain using cultural values and beliefs. In this work, we analyze 13 Wikipedia instances where users with different cultural background build knowledge in different ways. We compare edits of users. Using social network analysis we build and analyze co- authorship networks and watch the networks evolution. We explain the differences we have found using Hofstede dimensions and Schwartz cultural values and discuss implications for the design of smart community technologies. Our findings provide insights in requirements for technologies used for smart communities in different cultures.

  20. A Network Approach of Gene Co-expression in the Zea mays/Aspergillus flavus Pathosystem to Map Host/Pathogen Interaction Pathways

    OpenAIRE

    Musungu, Bryan M.; Bhatnagar, Deepak; Brown, Robert L.; Payne, Gary A.; OBrian, Greg; Fakhoury, Ahmad M.; Geisler, Matt

    2016-01-01

    A gene co-expression network (GEN) was generated using a dual RNA-seq study with the fungal pathogen Aspergillus flavus and its plant host Zea mays during the initial 3 days of infection. The analysis deciphered novel pathways and mapped genes of interest in both organisms during the infection. This network revealed a high degree of connectivity in many of the previously recognized pathways in Z. mays such as jasmonic acid, ethylene, and reactive oxygen species (ROS). For the pathogen A. flav...

  1. MPIGeneNet: Parallel Calculation of Gene Co-Expression Networks on Multicore Clusters.

    Science.gov (United States)

    Gonzalez-Dominguez, Jorge; Martin, Maria J

    2017-10-10

    In this work we present MPIGeneNet, a parallel tool that applies Pearson's correlation and Random Matrix Theory to construct gene co-expression networks. It is based on the state-of-the-art sequential tool RMTGeneNet, which provides networks with high robustness and sensitivity at the expenses of relatively long runtimes for large scale input datasets. MPIGeneNet returns the same results as RMTGeneNet but improves the memory management, reduces the I/O cost, and accelerates the two most computationally demanding steps of co-expression network construction by exploiting the compute capabilities of common multicore CPU clusters. Our performance evaluation on two different systems using three typical input datasets shows that MPIGeneNet is significantly faster than RMTGeneNet. As an example, our tool is up to 175.41 times faster on a cluster with eight nodes, each one containing two 12-core Intel Haswell processors. Source code of MPIGeneNet, as well as a reference manual, are available at https://sourceforge.net/projects/mpigenenet/.

  2. Statistics of the uplink co-tier interference in closed access heterogeneous networks

    KAUST Repository

    Tabassum, Hina

    2013-09-01

    In this paper, we derive a statistical model of the co-tier interference in closed access two tier heterogeneous wireless cellular networks with femtocell deployments. The derived model captures the impact of bounded path loss model, wall penetration loss, user distributions, random locations, and density of the femtocells. Firstly, we derive the analytical expressions for the probability density function (PDF) and moment generating function (MGF) of the co-tier interference considering a single femtocell interferer by exploiting the random disc line picking theory from geometric probability. We then derive the MGF of the cumulative interference from all femtocell interferers considering full spectral reuse in each femtocell. Orthogonal spectrum partitioning is assumed between the macrocell and femtocell networks to avoid any cross-tier interference. Finally, the accuracy of the derived expressions is validated through Monte-Carlo simulations and the expressions are shown to be useful in quantifying important network performance metrics such as ergodic capacity. © 2013 IEEE.

  3. Differential network analysis reveals evolutionary complexity in secondary metabolism of Rauvolfia serpentina over Catharanthus roseus

    Directory of Open Access Journals (Sweden)

    Shivalika Pathania

    2016-08-01

    Full Text Available Comparative co-expression analysis of multiple species using high-throughput data is an integrative approach to determine the uniformity as well as diversification in biological processes. Rauvolfia serpentina and Catharanthus roseus, both members of Apocyanacae family, are reported to have remedial properties against multiple diseases. Despite of sharing upstream of terpenoid indole alkaloid pathway, there is significant diversity in tissue-specific synthesis and accumulation of specialized metabolites in these plants. This led us to implement comparative co-expression network analysis to investigate the modules and genes responsible for differential tissue-specific expression as well as species-specific synthesis of metabolites. Towards these goals differential network analysis was implemented to identify candidate genes responsible for diversification of metabolites profile. Three genes were identified with significant difference in connectivity leading to differential regulatory behavior between these plants. These mechanisms may be responsible for diversification of secondary metabolism, and thereby for species-specific metabolite synthesis. The network robustness of R. serpentina, determined based on topological properties, was also complemented by comparison of gene-metabolite networks of both plants, and may have evolved to have complex metabolic mechanisms as compared to C. roseus under the influence of various stimuli. This study reveals evolution of complexity in secondary metabolism of Rauvolfia serpentina, and key genes that contribute towards diversification of specific metabolites.

  4. Differential Network Analysis Reveals Evolutionary Complexity in Secondary Metabolism of Rauvolfia serpentina over Catharanthus roseus.

    Science.gov (United States)

    Pathania, Shivalika; Bagler, Ganesh; Ahuja, Paramvir S

    2016-01-01

    Comparative co-expression analysis of multiple species using high-throughput data is an integrative approach to determine the uniformity as well as diversification in biological processes. Rauvolfia serpentina and Catharanthus roseus, both members of Apocyanacae family, are reported to have remedial properties against multiple diseases. Despite of sharing upstream of terpenoid indole alkaloid pathway, there is significant diversity in tissue-specific synthesis and accumulation of specialized metabolites in these plants. This led us to implement comparative co-expression network analysis to investigate the modules and genes responsible for differential tissue-specific expression as well as species-specific synthesis of metabolites. Toward these goals differential network analysis was implemented to identify candidate genes responsible for diversification of metabolites profile. Three genes were identified with significant difference in connectivity leading to differential regulatory behavior between these plants. These genes may be responsible for diversification of secondary metabolism, and thereby for species-specific metabolite synthesis. The network robustness of R. serpentina, determined based on topological properties, was also complemented by comparison of gene-metabolite networks of both plants, and may have evolved to have complex metabolic mechanisms as compared to C. roseus under the influence of various stimuli. This study reveals evolution of complexity in secondary metabolism of R. serpentina, and key genes that contribute toward diversification of specific metabolites.

  5. Perceived Conventionality in Co-speech Gestures Involves the Fronto-Temporal Language Network

    Directory of Open Access Journals (Sweden)

    Dhana Wolf

    2017-11-01

    Full Text Available Face-to-face communication is multimodal; it encompasses spoken words, facial expressions, gaze, and co-speech gestures. In contrast to linguistic symbols (e.g., spoken words or signs in sign language relying on mostly explicit conventions, gestures vary in their degree of conventionality. Bodily signs may have a general accepted or conventionalized meaning (e.g., a head shake or less so (e.g., self-grooming. We hypothesized that subjective perception of conventionality in co-speech gestures relies on the classical language network, i.e., the left hemispheric inferior frontal gyrus (IFG, Broca's area and the posterior superior temporal gyrus (pSTG, Wernicke's area and studied 36 subjects watching video-recorded story retellings during a behavioral and an functional magnetic resonance imaging (fMRI experiment. It is well documented that neural correlates of such naturalistic videos emerge as intersubject covariance (ISC in fMRI even without involving a stimulus (model-free analysis. The subjects attended either to perceived conventionality or to a control condition (any hand movements or gesture-speech relations. Such tasks modulate ISC in contributing neural structures and thus we studied ISC changes to task demands in language networks. Indeed, the conventionality task significantly increased covariance of the button press time series and neuronal synchronization in the left IFG over the comparison with other tasks. In the left IFG, synchronous activity was observed during the conventionality task only. In contrast, the left pSTG exhibited correlated activation patterns during all conditions with an increase in the conventionality task at the trend level only. Conceivably, the left IFG can be considered a core region for the processing of perceived conventionality in co-speech gestures similar to spoken language. In general, the interpretation of conventionalized signs may rely on neural mechanisms that engage during language comprehension.

  6. Multi-step-prediction of chaotic time series based on co-evolutionary recurrent neural network

    International Nuclear Information System (INIS)

    Ma Qianli; Zheng Qilun; Peng Hong; Qin Jiangwei; Zhong Tanwei

    2008-01-01

    This paper proposes a co-evolutionary recurrent neural network (CERNN) for the multi-step-prediction of chaotic time series, it estimates the proper parameters of phase space reconstruction and optimizes the structure of recurrent neural networks by co-evolutionary strategy. The searching space was separated into two subspaces and the individuals are trained in a parallel computational procedure. It can dynamically combine the embedding method with the capability of recurrent neural network to incorporate past experience due to internal recurrence. The effectiveness of CERNN is evaluated by using three benchmark chaotic time series data sets: the Lorenz series, Mackey-Glass series and real-world sun spot series. The simulation results show that CERNN improves the performances of multi-step-prediction of chaotic time series

  7. Network Analysis, Architecture, and Design

    CERN Document Server

    McCabe, James D

    2007-01-01

    Traditionally, networking has had little or no basis in analysis or architectural development, with designers relying on technologies they are most familiar with or being influenced by vendors or consultants. However, the landscape of networking has changed so that network services have now become one of the most important factors to the success of many third generation networks. It has become an important feature of the designer's job to define the problems that exist in his network, choose and analyze several optimization parameters during the analysis process, and then prioritize and evalua

  8. A study of the bibliometry and areas of the research groups of Archivos de Bronconeumología (2003-2007).

    Science.gov (United States)

    González-Alcaide, Gregorio; Aleixandre-Benavent, Rafael; de Granda-Orive, José Ignacio

    2010-02-01

    Scientific cooperation is essential for the advance of biomedical research. Scientists set up informal groups to work together on common issues, who are the main units in the research funding system. Bibliometric and Social Network Analysis methods allow informal groups in scientific papers to be identified and characterised. The objective of the study is to identify research groups in Archivos de Bronconeumología between 2003 and 2007 period with the aim of characterizing their scientific collaboration patterns and research areas. Co-authorships, institutional collaboration relationships and the main research areas of papers published in Archivos de Bronconeumología have been identified. Co-authorship networks and institutional collaboration networks have been constructed by using Pajek software tool. A total of 41 research groups involving 171 investigators have been identified. The Collaboration Index for articles was 5.59 and the Transcience Index was 73.11%. There was institutional collaboration in 60.33% of papers. The collaboration between institutions of the same region prevails (41.03%), followed by collaborations between departments, services or units of the same institution (39.74%), inter-regional collaboration (14,97%) and international collaboration (6.83%). A total of 83.03% of articles were cited. The main research areas covered by groups were chronic obstructive pulmonary disease, asthma, lung neoplasm, bronchogenic carcinoma, smoking and pulmonary embolism. The scientific production of a large number of Respiratory System Spanish research groups is published in Archivos de Bronconeumología. A notable collaboration and citation rate has been observed. Nevertheless, it is still essential to encourage inter-regional and international collaboration. Copyright 2009 SEPAR. Published by Elsevier Espana. All rights reserved.

  9. CO2 supply from an integrated network : the opportunities and challenges

    International Nuclear Information System (INIS)

    Heath, M.

    2006-01-01

    Strategies for using carbon dioxide (CO 2 ) from an integrated network were discussed. The oil and gas industry is currently considering carbon capture and storage (CCS) scenarios for Alberta. Integrated scenarios are aimed at providing business solution for CO 2 currently being produced in the province as well as optimizing the amounts of CO 2 that can be stored in geologic sinks. The scenarios hope to transform CCS into a value-added market capable of providing optimal returns to stakeholders along the CO 2 supply chain through the creation of an infrastructure designed to transport CO 2 in sufficient volumes. The storage of CO 2 in geologic sinks is expected to remove optimal amounts of anthropogenic CO 2 from larger stationary point sources. Interest in an integrated CO 2 market in Alberta has arisen from both economic and environmental concerns. The most effective CO 2 sources are fertilizer, gas processing, and hydrogen plants. Petrochemical facilities also produce high purity CO 2 . CO 2 capture approaches include post- and pre-combustion capture technologies as well as oxyfuel conversion. It was concluded that the cost of capturing CO 2 depends on concentration and purity levels obtained at the point of capture. Major CO 2 sources in the Western Canadian Sedimentary Basin (WCSB) were provided. tabs., figs

  10. Author contributions to ecological publications: What does it mean to be an author in modern ecological research?

    Directory of Open Access Journals (Sweden)

    John M Logan

    Full Text Available Authorship is a central element of scientific research carrying a variety of rewards and responsibilities, and while various guidelines exist, actual author contributions are often ambiguous. Inconsistent or limited contributions threaten to devalue authorship as intellectual currency and diminish authors' responsibility for published content. Researchers have assessed author contributions in the medical literature and other research fields, but similar data for the field of ecological research are lacking. Authorship practices in ecological research are broadly representative of a variety of fields due to the cross-disciplinary nature of collaborations in ecological studies. To better understand author contributions to current research, we distributed a survey regarding co-author contributions to a random selection of 996 lead authors of manuscripts published in ecological journals in 2010. We obtained useable responses from 45% of surveyed authors. Reported lead author contributions in ecological research studies consistently included conception of the project idea, data collection, analysis, and writing. Middle and last author contributions instead showed a high level of individual variability. Lead authorship in ecology is well defined while secondary authorship is more ambiguous. Nearly half (48% of all studies included in our survey had some level of non-compliance with Ecological Society of America (ESA authorship guidelines and the majority of studies (78% contained at least one co-author that did not meet International Committee of Medical Journal Editors (ICMJE requirements. Incidence of non-compliance varied with lead author occupation and author position. The probability of a study including an author that was non-compliant with ESA guidelines was lowest for professor-led studies and highest for graduate student and post doctoral researcher-led studies. Among studies with > two co-authors, all lead authors met ESA guidelines and only

  11. PV-Powered CoMP-Based Green Cellular Networks with a Standby Grid Supply

    Directory of Open Access Journals (Sweden)

    Abu Jahid

    2017-01-01

    Full Text Available This paper proposes a novel framework for PV-powered cellular networks with a standby grid supply and an essential energy management technique for achieving envisaged green networks. The proposal considers an emerging cellular network architecture employing two types of coordinated multipoint (CoMP transmission techniques for serving the subscribers. Under the proposed framework, each base station (BS is powered by an individual PV solar energy module having an independent storage device. BSs are also connected to the conventional grid supply for meeting additional energy demand. We also propose a dynamic inter-BS solar energy sharing policy through a transmission line for further greening the proposed network by minimizing the consumption from the grid supply. An extensive simulation-based study in the downlink of a Long-Term Evolution (LTE cellular system is carried out for evaluating the energy efficiency performance of the proposed framework. System performance is also investigated for identifying the impact of various system parameters including storage factor, storage capacity, solar generation capacity, transmission line loss, and different CoMP techniques.

  12. Gene expression patterns combined with network analysis identify hub genes associated with bladder cancer.

    Science.gov (United States)

    Bi, Dongbin; Ning, Hao; Liu, Shuai; Que, Xinxiang; Ding, Kejia

    2015-06-01

    To explore molecular mechanisms of bladder cancer (BC), network strategy was used to find biomarkers for early detection and diagnosis. The differentially expressed genes (DEGs) between bladder carcinoma patients and normal subjects were screened using empirical Bayes method of the linear models for microarray data package. Co-expression networks were constructed by differentially co-expressed genes and links. Regulatory impact factors (RIF) metric was used to identify critical transcription factors (TFs). The protein-protein interaction (PPI) networks were constructed by the Search Tool for the Retrieval of Interacting Genes/Proteins (STRING) and clusters were obtained through molecular complex detection (MCODE) algorithm. Centralities analyses for complex networks were performed based on degree, stress and betweenness. Enrichment analyses were performed based on Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) databases. Co-expression networks and TFs (based on expression data of global DEGs and DEGs in different stages and grades) were identified. Hub genes of complex networks, such as UBE2C, ACTA2, FABP4, CKS2, FN1 and TOP2A, were also obtained according to analysis of degree. In gene enrichment analyses of global DEGs, cell adhesion, proteinaceous extracellular matrix and extracellular matrix structural constituent were top three GO terms. ECM-receptor interaction, focal adhesion, and cell cycle were significant pathways. Our results provide some potential underlying biomarkers of BC. However, further validation is required and deep studies are needed to elucidate the pathogenesis of BC. Copyright © 2015 Elsevier Ltd. All rights reserved.

  13. Review Essay: Does Qualitative Network Analysis Exist?

    Directory of Open Access Journals (Sweden)

    Rainer Diaz-Bone

    2007-01-01

    Full Text Available Social network analysis was formed and established in the 1970s as a way of analyzing systems of social relations. In this review the theoretical-methodological standpoint of social network analysis ("structural analysis" is introduced and the different forms of social network analysis are presented. Structural analysis argues that social actors and social relations are embedded in social networks, meaning that action and perception of actors as well as the performance of social relations are influenced by the network structure. Since the 1990s structural analysis has integrated concepts such as agency, discourse and symbolic orientation and in this way structural analysis has opened itself. Since then there has been increasing use of qualitative methods in network analysis. They are used to include the perspective of the analyzed actors, to explore networks, and to understand network dynamics. In the reviewed book, edited by Betina HOLLSTEIN and Florian STRAUS, the twenty predominantly empirically orientated contributions demonstrate the possibilities of combining quantitative and qualitative methods in network analyses in different research fields. In this review we examine how the contributions succeed in applying and developing the structural analysis perspective, and the self-positioning of "qualitative network analysis" is evaluated. URN: urn:nbn:de:0114-fqs0701287

  14. Statistical analysis of network data with R

    CERN Document Server

    Kolaczyk, Eric D

    2014-01-01

    Networks have permeated everyday life through everyday realities like the Internet, social networks, and viral marketing. As such, network analysis is an important growth area in the quantitative sciences, with roots in social network analysis going back to the 1930s and graph theory going back centuries. Measurement and analysis are integral components of network research. As a result, statistical methods play a critical role in network analysis. This book is the first of its kind in network research. It can be used as a stand-alone resource in which multiple R packages are used to illustrate how to conduct a wide range of network analyses, from basic manipulation and visualization, to summary and characterization, to modeling of network data. The central package is igraph, which provides extensive capabilities for studying network graphs in R. This text builds on Eric D. Kolaczyk’s book Statistical Analysis of Network Data (Springer, 2009).

  15. Analysis of Semantic Networks using Complex Networks Concepts

    DEFF Research Database (Denmark)

    Ortiz-Arroyo, Daniel

    2013-01-01

    In this paper we perform a preliminary analysis of semantic networks to determine the most important terms that could be used to optimize a summarization task. In our experiments, we measure how the properties of a semantic network change, when the terms in the network are removed. Our preliminar...

  16. Systems thinking in public health: a bibliographic contribution to a meta-narrative review.

    Science.gov (United States)

    Chughtai, Saad; Blanchet, Karl

    2017-05-01

    Research across the formal, natural and social sciences has greatly expanded our knowledge about complex systems in recent decades, informing a broadly inclusive, cross-disciplinary conceptual framework referred to as Systems Thinking (ST). Its use in public health is rapidly increasing, although there remains a poor understanding of how these ideas have been imported, adapted and elaborated by public health research networks worldwide. This review employed a mixed methods approach to narrate the development of ST in public health. Tabulated results from a literature search of the Web of Science Core Collection database were used to perform a bibliometric analysis and literature review. Annual publication counts and citation scores were used to analyse trends and identify popular and potential 'landmark' publications. Citation network and co-authorship network diagrams were analysed to identify groups of articles and researchers in various network roles. Our search string related to 763 publications. Filtering excluded 208 publications while citation tracing identified 2 texts. The final 557 publications were analysed, revealing a near-exponential growth in literature over recent years. Half of all articles were published after 2010 with almost a fifth (17.8%) published in 2014. Bibliographic analysis identified five distinct citation and co-authorship groups homophilous by common geography, research focus, inspiration or institutional affiliation. As a loosely related set of sciences, many public health researchers have developed different aspects of ST based on their underlying perspective. Early studies were inspired by Management-related literature, while later groups adopted a broadly inclusive understanding which incorporated related Systems sciences and approaches. ST is an increasingly popular subject of discussion within public health although its understanding and approaches remain unclear. Briefly tracing the introduction and development of these ideas

  17. The Prevalence of Honorary and Ghost Authorships in Iranian Bio-Medical Journals and Its Associated Factors

    Science.gov (United States)

    Mirzazadeh, A; Navadeh, S; Rokni, MB; Farhangniya, M

    2011-01-01

    Background: The purpose of this study was to detect the prevalence of ghost and honorary authors and its determinant factors in bio-medical journals of Iran. Methods: The study was done in 2009–10 in Tehran, Kerman, and Iran Medical Universities, Iran. We contacted the first or corresponding authors of the papers had published papers in the recent two issues of Iranian Journal of Public Health, Journal of Kerman University of Medical Sciences, and Tehran University Medical Journal. They explored the role of each coauthor and others who had done mouthing for the paper. Then, according to ICMJE criteria, we counted how many of them are real, honorary or ghost author. For the analysis, we utilized two databases. One included articles as the records and the other included authors as the records. Results: From 124 articles, with 536 authors, 301 (56.1%) were honorary authors. Each article had 4.35 authors on average, while 2.4 of them were honorary authors. The percentage of honorary author in basic science articles was about 6% more than the articles of clinical sciences. Moreover, 89% of articles had at least one honorary author. About 20% of all articles had more than three honorary authors. Besides, 25 (21.43%) authors confessed they had colleague(s) omitted from the authors list, while only one (0.81%) of them met the authorship criteria. The percentage of agreement between the corresponding and the remaining authors on the number of honorary of the authors was about 47.4% (Kappa= 0.27, P= 0.01). Conclusion: It seems that the present data might assist the authorities to make a decisive decision on amending the process of authorship in Iran. PMID:23113050

  18. On business cycles synchronization in Europe: A note on network analysis

    Science.gov (United States)

    Matesanz, David; Ortega, Guillermo J.

    2016-11-01

    In this paper we examine synchronization in European business cycles from 1950 to 2013. Herein we further investigate previous and controversial results that arise from complex network analysis of this topic. By focusing on the importance of different configurations in the commonly used rolling windows and threshold significance levels, we find that selections are critical to obtaining accurate networks. Output co-movement and connectivity show no appreciable changes during the beginning of the Euro period, but rather dramatic jumps are observed since the outbreak of the global financial crisis. At this time, previous lead/lag effects disappeared and in-phase synchronization across Europe was observed.

  19. A novel multilayer model for missing link prediction and future link forecasting in dynamic complex networks

    Science.gov (United States)

    Yasami, Yasser; Safaei, Farshad

    2018-02-01

    The traditional complex network theory is particularly focused on network models in which all network constituents are dealt with equivalently, while fail to consider the supplementary information related to the dynamic properties of the network interactions. This is a main constraint leading to incorrect descriptions of some real-world phenomena or incomplete capturing the details of certain real-life problems. To cope with the problem, this paper addresses the multilayer aspects of dynamic complex networks by analyzing the properties of intrinsically multilayered co-authorship networks, DBLP and Astro Physics, and presenting a novel multilayer model of dynamic complex networks. The model examines the layers evolution (layers birth/death process and lifetime) throughout the network evolution. Particularly, this paper models the evolution of each node's membership in different layers by an Infinite Factorial Hidden Markov Model considering feature cascade, and thereby formulates the link generation process for intra-layer and inter-layer links. Although adjacency matrixes are useful to describe the traditional single-layer networks, such a representation is not sufficient to describe and analyze the multilayer dynamic networks. This paper also extends a generalized mathematical infrastructure to address the problems issued by multilayer complex networks. The model inference is performed using some Markov Chain Monte Carlo sampling strategies, given synthetic and real complex networks data. Experimental results indicate a tremendous improvement in the performance of the proposed multilayer model in terms of sensitivity, specificity, positive and negative predictive values, positive and negative likelihood ratios, F1-score, Matthews correlation coefficient, and accuracy for two important applications of missing link prediction and future link forecasting. The experimental results also indicate the strong predictivepower of the proposed model for the application of

  20. Artificial Neural Network Analysis System

    Science.gov (United States)

    2001-02-27

    Contract No. DASG60-00-M-0201 Purchase request no.: Foot in the Door-01 Title Name: Artificial Neural Network Analysis System Company: Atlantic... Artificial Neural Network Analysis System 5b. GRANT NUMBER 5c. PROGRAM ELEMENT NUMBER 6. AUTHOR(S) Powell, Bruce C 5d. PROJECT NUMBER 5e. TASK NUMBER...34) 27-02-2001 Report Type N/A Dates Covered (from... to) ("DD MON YYYY") 28-10-2000 27-02-2001 Title and Subtitle Artificial Neural Network Analysis

  1. How does language change as a lexical network? An investigation based on written Chinese word co-occurrence networks

    Science.gov (United States)

    Chen, Heng; Chen, Xinying

    2018-01-01

    Language is a complex adaptive system, but how does it change? For investigating this process, four diachronic Chinese word co-occurrence networks have been built based on texts that were written during the last 2,000 years. By comparing the network indicators that are associated with the hierarchical features in language networks, we learn that the hierarchy of Chinese lexical networks has indeed evolved over time at three different levels. The connections of words at the micro level are continually weakening; the number of words in the meso-level communities has increased significantly; and the network is expanding at the macro level. This means that more and more words tend to be connected to medium-central words and form different communities. Meanwhile, fewer high-central words link these communities into a highly efficient small-world network. Understanding this process may be crucial for understanding the increasing structural complexity of the language system. PMID:29489837

  2. End-to-End Deep Neural Networks and Transfer Learning for Automatic Analysis of Nation-State Malware

    Directory of Open Access Journals (Sweden)

    Ishai Rosenberg

    2018-05-01

    Full Text Available Malware allegedly developed by nation-states, also known as advanced persistent threats (APT, are becoming more common. The task of attributing an APT to a specific nation-state or classifying it to the correct APT family is challenging for several reasons. First, each nation-state has more than a single cyber unit that develops such malware, rendering traditional authorship attribution algorithms useless. Furthermore, the dataset of such available APTs is still extremely small. Finally, those APTs use state-of-the-art evasion techniques, making feature extraction challenging. In this paper, we use a deep neural network (DNN as a classifier for nation-state APT attribution. We record the dynamic behavior of the APT when run in a sandbox and use it as raw input for the neural network, allowing the DNN to learn high level feature abstractions of the APTs itself. We also use the same raw features for APT family classification. Finally, we use the feature abstractions learned by the APT family classifier to solve the attribution problem. Using a test set of 1000 Chinese and Russian developed APTs, we achieved an accuracy rate of 98.6%

  3. RoCoMAR: Robots' Controllable Mobility Aided Routing and Relay Architecture for Mobile Sensor Networks

    Science.gov (United States)

    Van Le, Duc; Oh, Hoon; Yoon, Seokhoon

    2013-01-01

    In a practical deployment, mobile sensor network (MSN) suffers from a low performance due to high node mobility, time-varying wireless channel properties, and obstacles between communicating nodes. In order to tackle the problem of low network performance and provide a desired end-to-end data transfer quality, in this paper we propose a novel ad hoc routing and relaying architecture, namely RoCoMAR (Robots' Controllable Mobility Aided Routing) that uses robotic nodes' controllable mobility. RoCoMAR repeatedly performs link reinforcement process with the objective of maximizing the network throughput, in which the link with the lowest quality on the path is identified and replaced with high quality links by placing a robotic node as a relay at an optimal position. The robotic node resigns as a relay if the objective is achieved or no more gain can be obtained with a new relay. Once placed as a relay, the robotic node performs adaptive link maintenance by adjusting its position according to the movements of regular nodes. The simulation results show that RoCoMAR outperforms existing ad hoc routing protocols for MSN in terms of network throughput and end-to-end delay. PMID:23881134

  4. RoCoMAR: Robots’ Controllable Mobility Aided Routing and Relay Architecture for Mobile Sensor Networks

    Directory of Open Access Journals (Sweden)

    Seokhoon Yoon

    2013-07-01

    Full Text Available In a practical deployment, mobile sensor network (MSN suffers from a low performance due to high node mobility, time-varying wireless channel properties, and obstacles between communicating nodes. In order to tackle the problem of low network performance and provide a desired end-to-end data transfer quality, in this paper we propose a novel ad hoc routing and relaying architecture, namely RoCoMAR (Robots’ Controllable Mobility Aided Routing that uses robotic nodes’ controllable mobility. RoCoMAR repeatedly performs link reinforcement process with the objective of maximizing the network throughput, in which the link with the lowest quality on the path is identified and replaced with high quality links by placing a robotic node as a relay at an optimal position. The robotic node resigns as a relay if the objective is achieved or no more gain can be obtained with a new relay. Once placed as a relay, the robotic node performs adaptive link maintenance by adjusting its position according to the movements of regular nodes. The simulation results show that RoCoMAR outperforms existing ad hoc routing protocols for MSN in terms of network throughput and end-to-end delay.

  5. Sinister connections: How to analyse organised crime with social network analysis?

    Directory of Open Access Journals (Sweden)

    Tomáš Diviák

    2018-04-01

    Full Text Available Networks have recently become ubiquitous in many scientific fields. In criminology, social network analysis (SNA provides a potent tool for analysis of organized crime. This paper introduces basic network terms and measures as well as advanced models and reviews their application in criminological research. The centrality measures – degree and betweenness – are introduced as means to describe relative importance of actors in the network. The centrality measures are useful also in determining strategically positioned actors within the network or providing efficient targets for disruption of criminal networks. The cohesion measures, namely density, centralization, and average geodesic distance are described and their relevance is related to the idea of efficiency-security trade-off. As the last of the basic measures, the attention is paid to subgroup identification algorithms such as cliques, k-plexes, and factions. Subgroups are essential in the discussion on the cell-structure in criminal networks. The following part of the paper is a brief overview of more sophisticated network models. Models allow for theory testing, distinguishing systematic processes from randomness, and simplification of complex network structures. Quadratic assignment procedure, blockmodels, exponential random graph models, and stochastic actor-oriented models are covered. Some important research examples include similarities in co-offending, core-periphery structures, closure and brokerage, and network evolution. Subsequently, the paper reflects the three biggest challenges for application of SNA to criminal settings – data availability, proper formulation of theories and adequate methods application. In conclusion, readers are referred to books and journals combining SNA and criminology as well as to software suitable to carry out SNA.

  6. Formulation and Design of a CO2 Utilization Network Detailed Through a Conceptual Example

    DEFF Research Database (Denmark)

    Frauzem, Rebecca; Fjellerup, Kasper; Gani, Rafiqul

    information is available to describe the network mathematically, the most promising paths based on known technologies are designed and analyzed first. This makes the stages iterative rather than purely sequential. As part of this, the network is analyzed in the conceptual example of methanol synthesis via CO2...

  7. Social Network Analysis and informal trade

    DEFF Research Database (Denmark)

    Walther, Olivier

    networks can be applied to better understand informal trade in developing countries, with a particular focus on Africa. The paper starts by discussing some of the fundamental concepts developed by social network analysis. Through a number of case studies, we show how social network analysis can...... illuminate the relevant causes of social patterns, the impact of social ties on economic performance, the diffusion of resources and information, and the exercise of power. The paper then examines some of the methodological challenges of social network analysis and how it can be combined with other...... approaches. The paper finally highlights some of the applications of social network analysis and their implications for trade policies....

  8. [Bibliometric analysis on relations between cardiovascular disease and erectile dysfunction].

    Science.gov (United States)

    Tian, G X; Liu, X P; Zeng, X T; Su, X J; Wei, W L; Wang, X H

    2017-06-10

    Objective: To understand the current situation and trend on the relations between erectile dysfunction (ED) and cardiovascular disease (CVD) through analyzing the epidemiologic research data. Methods: We conducted a literature search on the Scopus for potentially relevant epidemiologic studies on ED and CVD published from 1957 to October, 28, 2016. Age of the article, types, regions, citation, and co-authorship of the documents were recorded. Results: A total number of 412 pieces of literature were published in the past six decades, with original articles the most common types of ED and CVD. ED and CVD associated epidemiologic topics had an annual increase in number, and remained stable in the past decade, with occident countries as the United States and Italy taking the lead in this area. Clinical and epidemiological studies were the hottest areas, with most authors sharing a co-authorship. Conclusion: Our results suggested that inter-disciplinary cooperation with emphasize on clinical application were the effective starting points for ED and CVD associated epidemiologic studies.

  9. A network model for the propagation of Hepatitis C with HIV co-infection

    Science.gov (United States)

    Nucit, Arnaud; Randon-Furling, Julien

    2017-05-01

    We define and examine a model of epidemic propagation for a virus such as Hepatitis C (with HIV co-infection) on a network of networks, namely the network of French urban areas. One network level is that of the individual interactions inside each urban area. The second level is that of the areas themselves, linked by individuals travelling between these areas and potentially helping the epidemic spread from one city to another. We choose to encode the second level of the network as extra, special nodes in the first level. We observe that such an encoding leads to sensible results in terms of the extent and speed of propagation of an epidemic, depending on its source point.

  10. Framework for network modularization and Bayesian network analysis to investigate the perturbed metabolic network

    Directory of Open Access Journals (Sweden)

    Kim Hyun

    2011-12-01

    Full Text Available Abstract Background Genome-scale metabolic network models have contributed to elucidating biological phenomena, and predicting gene targets to engineer for biotechnological applications. With their increasing importance, their precise network characterization has also been crucial for better understanding of the cellular physiology. Results We herein introduce a framework for network modularization and Bayesian network analysis (FMB to investigate organism’s metabolism under perturbation. FMB reveals direction of influences among metabolic modules, in which reactions with similar or positively correlated flux variation patterns are clustered, in response to specific perturbation using metabolic flux data. With metabolic flux data calculated by constraints-based flux analysis under both control and perturbation conditions, FMB, in essence, reveals the effects of specific perturbations on the biological system through network modularization and Bayesian network analysis at metabolic modular level. As a demonstration, this framework was applied to the genetically perturbed Escherichia coli metabolism, which is a lpdA gene knockout mutant, using its genome-scale metabolic network model. Conclusions After all, it provides alternative scenarios of metabolic flux distributions in response to the perturbation, which are complementary to the data obtained from conventionally available genome-wide high-throughput techniques or metabolic flux analysis.

  11. Framework for network modularization and Bayesian network analysis to investigate the perturbed metabolic network.

    Science.gov (United States)

    Kim, Hyun Uk; Kim, Tae Yong; Lee, Sang Yup

    2011-01-01

    Genome-scale metabolic network models have contributed to elucidating biological phenomena, and predicting gene targets to engineer for biotechnological applications. With their increasing importance, their precise network characterization has also been crucial for better understanding of the cellular physiology. We herein introduce a framework for network modularization and Bayesian network analysis (FMB) to investigate organism's metabolism under perturbation. FMB reveals direction of influences among metabolic modules, in which reactions with similar or positively correlated flux variation patterns are clustered, in response to specific perturbation using metabolic flux data. With metabolic flux data calculated by constraints-based flux analysis under both control and perturbation conditions, FMB, in essence, reveals the effects of specific perturbations on the biological system through network modularization and Bayesian network analysis at metabolic modular level. As a demonstration, this framework was applied to the genetically perturbed Escherichia coli metabolism, which is a lpdA gene knockout mutant, using its genome-scale metabolic network model. After all, it provides alternative scenarios of metabolic flux distributions in response to the perturbation, which are complementary to the data obtained from conventionally available genome-wide high-throughput techniques or metabolic flux analysis.

  12. Analysis of Recurrent Analog Neural Networks

    Directory of Open Access Journals (Sweden)

    Z. Raida

    1998-06-01

    Full Text Available In this paper, an original rigorous analysis of recurrent analog neural networks, which are built from opamp neurons, is presented. The analysis, which comes from the approximate model of the operational amplifier, reveals causes of possible non-stable states and enables to determine convergence properties of the network. Results of the analysis are discussed in order to enable development of original robust and fast analog networks. In the analysis, the special attention is turned to the examination of the influence of real circuit elements and of the statistical parameters of processed signals to the parameters of the network.

  13. Microarray profiling and co-expression network analysis of circulating lncRNAs and mRNAs associated with major depressive disorder.

    Directory of Open Access Journals (Sweden)

    Zhifen Liu

    Full Text Available LncRNAs, which represent one of the most highly expressed classes of ncRNAs in the brain, are becoming increasingly interesting with regard to brain functions and disorders. However, changes in the expression of regulatory lncRNAs in Major Depressive Disorder (MDD have not yet been reported. Using microarrays, we profiled the expression of 34834 lncRNAs and 39224 mRNAs in peripheral blood sampled from MDD patients as well as demographically-matched controls. Among these, we found that 2007 lncRNAs and 1667 mRNAs were differentially expressed, 17 of which were documented as depression-related gene in previous studies. Gene Ontology (GO and pathway analyses indicated that the biological functions of differentially expressed mRNAs were related to fundamental metabolic processes and neurodevelopment diseases. To investigate the potential regulatory roles of the differentially expressed lncRNAs on the mRNAs, we also constructed co-expression networks composed of the lncRNAs and mRNAs, which shows significant correlated patterns of expression. In the MDD-derived network, there were a greater number of nodes and connections than that in the control-derived network. The lncRNAs located at chr10:874695-874794, chr10:75873456-75873642, and chr3:47048304-47048512 may be important factors regulating the expression of mRNAs as they have previously been reported associations with MDD. This study is the first to explore genome-wide lncRNA expression and co-expression with mRNA patterns in MDD using microarray technology. We identified circulating lncRNAs that are aberrantly expressed in MDD and the results suggest that lncRNAs may contribute to the molecular pathogenesis of MDD.

  14. Nanoporous amide networks based on tetraphenyladamantane for selective CO2capture

    KAUST Repository

    Zulfiqar, Sonia; Mantione, Daniele; El Tall, Omar; Sarwar, Muhammad Ilyas; Ruipé rez, Fernando; Rothenberger, Alexander; Mecerreyes, David

    2016-01-01

    Reduction of anthropogenic CO2 emissions and CO2 separation from post-combustion flue gases are among the imperative issues in the spotlight at present. Hence, it is highly desirable to develop efficient adsorbents for mitigating climate change with possible energy savings. Here, we report the design of a facile one pot catalyst-free synthetic protocol for the generation of three different nitrogen rich nanoporous amide networks (NANs) based on tetraphenyladamantane. Besides the porous architecture, CO2 capturing potential and high thermal stability, these NANs possess notable CO2/N2 selectivity with reasonable retention while increasing the temperature from 273 K to 298 K. The quantum chemical calculations also suggest that CO2 interacts mainly in the region of polar amide groups (-CONH-) present in NANs and this interaction is much stronger than that with N2 thus leading to better selectivity and affirming them as promising contenders for efficient gas separation. © The Royal Society of Chemistry 2016.

  15. Nanoporous amide networks based on tetraphenyladamantane for selective CO2capture

    KAUST Repository

    Zulfiqar, Sonia

    2016-04-19

    Reduction of anthropogenic CO2 emissions and CO2 separation from post-combustion flue gases are among the imperative issues in the spotlight at present. Hence, it is highly desirable to develop efficient adsorbents for mitigating climate change with possible energy savings. Here, we report the design of a facile one pot catalyst-free synthetic protocol for the generation of three different nitrogen rich nanoporous amide networks (NANs) based on tetraphenyladamantane. Besides the porous architecture, CO2 capturing potential and high thermal stability, these NANs possess notable CO2/N2 selectivity with reasonable retention while increasing the temperature from 273 K to 298 K. The quantum chemical calculations also suggest that CO2 interacts mainly in the region of polar amide groups (-CONH-) present in NANs and this interaction is much stronger than that with N2 thus leading to better selectivity and affirming them as promising contenders for efficient gas separation. © The Royal Society of Chemistry 2016.

  16. What would dense atmospheric observation networks bring to the quantification of city CO2 emissions?

    Science.gov (United States)

    Wu, Lin; Broquet, Grégoire; Ciais, Philippe; Bellassen, Valentin; Vogel, Felix; Chevallier, Frédéric; Xueref-Remy, Irène; Wang, Yilong

    2016-06-01

    Cities currently covering only a very small portion ( directly release to the atmosphere about 44 % of global energy-related CO2, but they are associated with 71-76 % of CO2 emissions from global final energy use. Although many cities have set voluntary climate plans, their CO2 emissions are not evaluated by the monitoring, reporting, and verification (MRV) procedures that play a key role for market- or policy-based mitigation actions. Here we analyze the potential of a monitoring tool that could support the development of such procedures at the city scale. It is based on an atmospheric inversion method that exploits inventory data and continuous atmospheric CO2 concentration measurements from a network of stations within and around cities to estimate city CO2 emissions. This monitoring tool is configured for the quantification of the total and sectoral CO2 emissions in the Paris metropolitan area (˜ 12 million inhabitants and 11.4 TgC emitted in 2010) during the month of January 2011. Its performances are evaluated in terms of uncertainty reduction based on observing system simulation experiments (OSSEs). They are analyzed as a function of the number of sampling sites (measuring at 25 m a.g.l.) and as a function of the network design. The instruments presently used to measure CO2 concentrations at research stations are expensive (typically ˜ EUR 50 k per sensor), which has limited the few current pilot city networks to around 10 sites. Larger theoretical networks are studied here to assess the potential benefit of hypothetical operational lower-cost sensors. The setup of our inversion system is based on a number of diagnostics and assumptions from previous city-scale inversion experiences with real data. We find that, given our assumptions underlying the configuration of the OSSEs, with 10 stations only the uncertainty for the total city CO2 emission during 1 month is significantly reduced by the inversion by ˜ 42 %. It can be further reduced by extending the

  17. Differential sharing and distinct co-occurrence networks among spatially close bacterial microbiota of bark, mosses and lichens‬‬.

    Science.gov (United States)

    Aschenbrenner, Ines Aline; Cernava, Tomislav; Erlacher, Armin; Berg, Gabriele; Grube, Martin

    2017-05-01

    Knowledge of bacterial community host-specificity has increased greatly in recent years. However, the intermicrobiome relationships of unrelated but spatially close organisms remain little understood. Trunks of trees covered by epiphytes represent complex habitats with a mosaic of ecological niches. In this context, we investigated the structure, diversity and interactions of microbiota associated with lichens, mosses and the bare tree bark. Comparative analysis revealed significant differences in the habitat-associated community structures. Corresponding co-occurrence analysis indicated that the lichen microbial network is less complex and less densely interconnected than the moss- and bark-associated networks. Several potential generalists and specialists were identified for the selected habitats. Generalists belonged mainly to Proteobacteria, with Sphingomonas as the most abundant genus. The generalists comprise microorganisms with generally beneficial features, such as nitrogen fixation or other supporting functions, according to a metagenomic analysis. We argue that beneficial strains shared among hosts contribute to ecological stability of the host biocoenoses. © 2017 John Wiley & Sons Ltd.

  18. A Narrative Approach to Authorship: The Work of Evi Tampold from Her Mother/Publisher’s (and Her Own Perspective

    Directory of Open Access Journals (Sweden)

    Carol Nash

    2017-12-01

    Full Text Available Collaborative authorship in graphic medicine is examinable from a number of perspectives.  One neglected approach is to look for developments in how an individual artist collaborates over the course of illustrating different graphic medicine novels.  In the first, the artist collaborated with her younger self in trying to regain memories of an until then forgotten past.  In the second, she worked closely with the writer to try to determine exactly what the author intended, adding a new dimension to the piece unavailable without the illustrations.  In the third still to be completed work, her illustrations are based on collaboration with only the text and a few photographs, lacking direct contact with the author.  How this artist’s three methods of collaboration have defined her collaborative authorship will be the focus.  What is unique is this study will be undertaken from the stand point of the illustrator’s publisher, who is also her mother.

  19. Robillard, Amy E. and Ron Fortune (eds. Authorship Contested. Cultural Challenges to the Authentic Autonomous Author (New York, and London: Routledge, 2015

    Directory of Open Access Journals (Sweden)

    Alex Ciorogar

    2016-12-01

    Full Text Available A review of Amy E. Robillard and Ron Fortune's (eds Authorship Contested: Cultural Challenges to the Authentic Autonomous Author. New York, and London: Routledge, 2015. 214 pp. £100.

  20. Co-creating value through agents interaction within service network

    International Nuclear Information System (INIS)

    Okdinawati, L.; Simatupang, T.M.; Sunitiyoso, Y.

    2017-01-01

    The purpose of this paper is to gives further understanding on value co-creation mechanisms in B-to-B service network by reinforcing the processes, the relationships, and influences of other agents where Collaborative Transportation Management (CTM) forms might be best employed. Design/methodology/approach: In order to model the interactions among agents in the collaboration processes and the value co-creation processes, this research used three collaboration cases in Indonesia. Then, the agent-based simulation was used to capture both the collaboration process and the value co-creation process of the three collaboration cases. Findings: The interactions among the agents both inside and outside their collaboration environment determined agent’s role as a value co-creator. The willingness of an agent to accept the opinion of another agent determined the degree of their willingness to co-operate and to change their strategies, and perceptions. Therefore, influenced the size of the value obtained by them in each collaboration process. Research limitations/implications: The findings of the simulations subject to assumptions based on the collaboration cases. Further research is related to how to encourage agents to co-operate and adjust their perceptions. Practical implications: It is crucial for the practitioners to interact with another agent both inside and outside their collaboration environment. The opinions of another agent inside the collaboration environment also need to be considered. Originality/value: This research is derived from its emphasis on how a value is co-created by reinforcing both the collaborative processes and the interactions among agents as well as on how CTM might be best employed.