WorldWideScience

Sample records for ck2 structurally deviates

  1. Protein kinase CK2 in health and disease: Protein kinase CK2: from structures to insights

    DEFF Research Database (Denmark)

    Niefind, K; Raaf, J; Issinger, Olaf-Georg

    2009-01-01

    Within the last decade, 40 crystal structures corresponding to protein kinase CK2 (former name 'casein kinase 2'), to its catalytic subunit CK2alpha and to its regulatory subunit CK2beta were published. Together they provide a valuable, yet by far not complete basis to rationalize the biochemical...... critical region of CK2alpha recruitment is pre-formed in the unbound state. In CK2alpha the activation segment - a key element of protein kinase regulation - adapts invariably the typical conformation of the active enzymes. Recent structures of human CK2alpha revealed a surprising plasticity in the ATP...

  2. Primary and secondary interactions between CK2alpha and CK2beta lead to ring-like structures in the crystals of the CK2 holoenzyme

    DEFF Research Database (Denmark)

    Niefind, Karsten; Issinger, Olaf-Georg

    Protein kinase CK2 predominantly exists as a heterotetrameric holoenyzme consisting of two catalytic subunits (CK2alpha) and two non-catalytic subunits (CK2beta). Early investigations which we review here had revealed the presence of two types of contacts between CK2alpha and CK2beta: a primary...... interaction responsible for the stability of the CK2 holoenzyme and stimulatory for the catalytic activity, and a secondary interaction which is inhibitory and in which the acidic loop of CK2beta associates with the basic stretch and the (p+1)-loop of CK2alpha. At the end of the last decade both types of...... distinct aggregation propensity of CK2. We demonstrate here that in the CK2 holoenzyme crystals contacts between different CK2 tetramers exists which provide structural details of the secondary CK2alpha/CK2beta interactions. These mainly ionic interactions lead to trimeric rings of CK2 holoenzymes in the...

  3. The catalytic subunit of human protein kinase CK2 structurally deviates from its maize homologue in complex with the nucleotide competitive inhibitor emodin

    DEFF Research Database (Denmark)

    Raaf, Jennifer; Klopffleisch, Karsten; Issinger, Olaf-Georg;

    2008-01-01

    The Ser/Thr kinase CK2 (former name: casein kinase 2) is a heterotetrameric enzyme composed of two catalytic chains (CK2alpha) attached to a dimer of noncatalytic subunits. Together with the cyclin-dependent kinases and the mitogen-activated protein kinases, CK2alpha belongs to the CMGC family of...

  4. Crystal structure of human protein kinase CK2: insights into basic properties of the CK2 holoenzyme

    DEFF Research Database (Denmark)

    Niefind, K; Guerra, B; Ermakowa, I; Issinger, O G

    2001-01-01

    The crystal structure of a fully active form of human protein kinase CK2 (casein kinase 2) consisting of two C-terminally truncated catalytic and two regulatory subunits has been determined at 3.1 A resolution. In the CK2 complex the regulatory subunits form a stable dimer linking the two catalyt...

  5. Structure of the human protein kinase CK2 catalytic subunit CK2α' and interaction thermodynamics with the regulatory subunit CK2β

    DEFF Research Database (Denmark)

    Bischoff, Nils; Olsen, Birgitte; Raaf, Jennifer; Bretner, Maria; Issinger, Olaf-Georg; Niefind, Karsten

    2011-01-01

    Protein kinase CK2 (formerly "casein kinase 2") is composed of a central dimer of noncatalytic subunits (CK2β) binding two catalytic subunits. In humans, there are two isoforms of the catalytic subunit (and an additional splicing variant), one of which (CK2α) is well characterized. To supplement ...

  6. Protein kinase CK2 structure-function relationship

    DEFF Research Database (Denmark)

    Boldyreff, B; Meggio, F; Pinna, L A;

    1994-01-01

    Protein kinase CK2 subunits alpha and beta were expressed either separately or together in a bacterial expression system (pT7-7/BL21(DE3)) and purified to homogeneity. After mixing the subunits, a CK2 holoenzyme (alpha 2 beta 2) was spontaneously reconstituted, which displays identical features as...

  7. Crystal structure of the catalytic subunit of protein kinase CK2 from Zea mays at 2.1 A resolution

    DEFF Research Database (Denmark)

    Niefind, K; Guerra, B; Pinna, L A;

    1998-01-01

    CK2alpha is the catalytic subunit of protein kinase CK2, an acidophilic and constitutively active eukaryotic Ser/Thr kinase involved in cell proliferation. A crystal structure, at 2.1 A resolution, of recombinant maize CK2alpha (rmCK2alpha) in the presence of ATP and Mg2+, shows the enzyme in an ...

  8. Structure-function analysis of the beta regulatory subunit of protein kinase CK2 by targeting embryonic stem cell.

    Science.gov (United States)

    Ziercher, Léa; Filhol, Odile; Laudet, Béatrice; Prudent, Renaud; Cochet, Claude; Buchou, Thierry

    2011-10-01

    Programs that govern stem cell maintenance and pluripotency are dependent on extracellular factors and of intrinsic cell modulators. Embryonic stem (ES) cells with a specific depletion of the gene encoding the regulatory subunit of protein kinase CK2 (CK2β) revealed a viability defect. However, analysis of CK2β functions along the neural lineage established CK2β as a positive regulator for neural stem/progenitor cell (NSC) proliferation and multipotency. By using an in vitro genetic conditional approach, we demonstrate in this work that specific domains of CK2β involved in the regulatory function towards CK2 catalytic subunits are crucial structural determinants for ES cell homeostasis. PMID:21861102

  9. Biophysical characterization of the structural change of Nopp140, an intrinsically disordered protein, in the interaction with CK2α.

    Science.gov (United States)

    Na, Jung-Hyun; Lee, Won-Kyu; Kim, Yuyoung; Jeong, Cherlhyun; Song, Seung Soo; Cha, Sun-Shin; Han, Kyou-Hoon; Shin, Yeon-Kyun; Yu, Yeon Gyu

    2016-08-19

    Nucleolar phosphoprotein 140 (Nopp140) is a nucleolar protein, more than 80% of which is disordered. Previous studies have shown that the C-terminal region of Nopp140 (residues 568-596) interacts with protein kinase CK2α, and inhibits the catalytic activity of CK2. Although the region of Nopp140 responsible for the interaction with CK2α was identified, the structural features and the effect of this interaction on the structure of Nopp140 have not been defined due to the difficulty of structural characterization of disordered protein. In this study, the disordered feature of Nopp140 and the effect of CK2α on the structure of Nopp140 were examined using single-molecule fluorescence resonance energy transfer (smFRET) and electron paramagnetic resonance (EPR). The interaction with CK2α was increased conformational rigidity of the CK2α-interacting region of Nopp140 (Nopp140C), suggesting that the disordered and flexible conformation of Nopp140C became more rigid conformation as it binds to CK2α. In addition, site specific spin labeling and EPR analysis confirmed that the residues 574-589 of Nopp140 are critical for binding to CK2α. Similar technical approaches can be applied to analyze the conformational changes in other IDPs during their interactions with binding partners. PMID:27297113

  10. Structure of protein kinase CK2: dimerization of the human beta-subunit

    DEFF Research Database (Denmark)

    Boldyreff, B; Mietens, U; Issinger, O G

    1996-01-01

    Protein kinase CK2 has been shown to be elevated in all so far investigated solid tumors and its catalytic subunit has been shown to serve as an oncogene product. CK2 is a heterotetrameric serine-threonine kinase composed of two catalytic (alpha and/or alpha') and two regulatory beta...

  11. Structure of the gene encoding the murine protein kinase CK2 beta subunit

    DEFF Research Database (Denmark)

    Boldyreff, B; Issinger, O G

    1995-01-01

    The mouse protein kinase CK2 beta subunit gene (Csnk2b) is composed of seven exons contained within 7874 bp. The exon and intron lengths extend from 76 to 321 and 111 to 1272 bp, respectively. The lengths of the murine coding exons correspond exactly to the lengths of the exons in the human CK2...... beta gene. Both genes contain a first untranslated exon. Also, the promoter regions from the human and murine CK2 beta gene share some common features, e.g., they contain neither a TATA nor a CAAT box, exon 1 is flanked by a cluster of CpG dinucleotides and recognition sequences for the Hpa...... has no counterpart in the murine gene. Hence, regulation of transcription of the CK2 beta gene by the catalytic CK2 alpha subunit as was described by Robitzki et al. (J. Biol. Chem. 268: 5694-5703, 1993) for the human gene cannot be considered a general regulatory mechanism....

  12. Inhibition of protein kinase CK2 by anthraquinone-related compounds. A structural insight.

    Science.gov (United States)

    De Moliner, Erika; Moro, Stefano; Sarno, Stefania; Zagotto, Giuseppe; Zanotti, Giuseppe; Pinna, Lorenzo A; Battistutta, Roberto

    2003-01-17

    Protein kinases play key roles in signal transduction and therefore are among the most attractive targets for drug design. The pharmacological aptitude of protein kinase inhibitors is highlighted by the observation that various diseases with special reference to cancer are because of the abnormal expression/activity of individual kinases. The resolution of the three-dimensional structure of the target kinase in complex with inhibitors is often the starting point for the rational design of this kind of drugs, some of which are already in advanced clinical trial or even in clinical practice. Here we present and discuss three new crystal structures of ATP site-directed inhibitors in complex with "casein kinase-2" (CK2), a constitutively active protein kinase implicated in a variety of cellular functions and misfunctions. With the help of theoretical calculations, we disclose some key features underlying the inhibitory efficiency of anthraquinone derivatives, outlining three different binding modes into the active site. In particular, we show that a nitro group in a hydroxyanthraquinone scaffold decreases the inhibitory constants K(i) because of electron-withdrawing and resonance effects that enhance the polarization of hydroxylic substituents in paraposition. PMID:12419810

  13. Crystal structure of a C-terminal deletion mutant of human protein kinase CK2 catalytic subunit

    DEFF Research Database (Denmark)

    Ermakova, Inessa; Boldyreff, Brigitte; Issinger, Olaf-Georg; Niefind, Karsten

    2003-01-01

    Protein kinase CK2 (formerly called: casein kinase 2) is a heterotetrameric enzyme composed of two separate catalytic chains (CK2alpha) and a stable dimer of two non-catalytic subunits (CK2beta). CK2alpha is a highly conserved member of the superfamily of eukaryotic protein kinases. The crystal s...

  14. The protein kinase CK2(Andante) holoenzyme structure supports proposed models of autoregulation and trans-autophosphorylation

    DEFF Research Database (Denmark)

    Schnitzler, Alexander; Olsen, Birgitte Brinkmann; Issinger, Olaf-Georg;

    2014-01-01

    (Andante) that contains a CK2β variant mutated in a CK2α-contact helix and described to be responsible for a prolonged circadian rhythm in Drosophila. The increased propensity of CK2(Andante) to form aggregates with completely blocked active sites may contribute to this phenotype....

  15. Coumarin as attractive casein kinase 2 (CK2) inhibitor scaffold: an integrate approach to elucidate the putative binding motif and explain structure-activity relationships.

    Science.gov (United States)

    Chilin, Adriana; Battistutta, Roberto; Bortolato, Andrea; Cozza, Giorgio; Zanatta, Samuele; Poletto, Giorgia; Mazzorana, Marco; Zagotto, Giuseppe; Uriarte, Eugenio; Guiotto, Adriano; Pinna, Lorenzo A; Meggio, Flavio; Moro, Stefano

    2008-02-28

    Casein kinase 2 (CK2) is an ubiquitous, essential, and highly pleiotropic protein kinase whose abnormally high constitutive activity is suspected to underlie its pathogenic potential in neoplasia and other diseases. Recently, using different virtual screening approaches, we have identified several novel CK2 inhibitors. In particular, we have discovered that coumarin moiety can be considered an attractive CK2 inhibitor scaffold. In the present work, we have synthetized and tested a small library of coumarins (more than 60), rationalizing the observed structure-activity relationship. Moreover, the most promising inhibitor, 3,8-dibromo-7-hydroxy-4-methylchromen-2-one (DBC), has been also crystallized in complex with CK2, and the experimental binding mode has been used to derive a linear interaction energy (LIE) model. PMID:18251491

  16. The CK2 alpha/CK2 beta interface of human protein kinase CK2 harbors a binding pocket for small molecules

    DEFF Research Database (Denmark)

    Raaf, Jennifer; Brunstein, Elena; Issinger, Olaf-Georg; Niefind, Karsten

    2008-01-01

    The Ser/Thr kinase CK2 (previously called casein kinase 2) is composed of two catalytic chains (CK2 alpha) attached to a dimer of noncatalytic subunits (CK2 beta). CK2 is involved in suppression of apoptosis, cell survival, and tumorigenesis. To investigate these activities and possibly affect them......, selective CK2 inhibitors are required. An often-used CK2 inhibitor is 5,6-dichloro-1-beta-D-ribofuranosylbenzimidazole (DRB). In a complex structure with human CK2 alpha, DRB binds to the canonical ATP cleft, but additionally it occupies an allosteric site that can be alternatively filled by glycerol....... Inhibition kinetic studies corroborate the dual binding mode of the inhibitor. Structural comparisons reveal a surprising conformational plasticity of human CK2 alpha around both DRB binding sites. After local rearrangement, the allosteric site serves as a CK2 beta interface. This opens the potential to...

  17. Protein kinase CK2 in human diseases

    DEFF Research Database (Denmark)

    Guerra, Barbara; Issinger, Olaf-Georg

    2008-01-01

    Protein kinase CK2 (formerly referred to as casein kinase II) is an evolutionary conserved, ubiquitous protein kinase. There are two paralog catalytic subunits, i.e. alpha (A1) and alpha' (A2). The alpha and alpha' subunits are linked to two beta subunits to produce a heterotetrameric structure....... The catalytic alpha subunits are distantly related to the CMGC subfamily of kinases, such as the Cdk kinases. There are some peculiarities associated with protein kinase CK2, which are not found with most other protein kinases: (i) the enzyme is constitutively active, (ii) it can use ATP and GTP and...... specifically target this protein kinase [10]. Since not all the aspects of what has been published on CK2 can be covered in this review, we would like to recommend the following reviews; (i) for general information on CK2 [11-18] and (ii) with a focus on aberrant CK2 [19-22]....

  18. Structure and Property Based Design of Pyrazolo[1,5-a]pyrimidine Inhibitors of CK2 Kinase with Activity in Vivo.

    Science.gov (United States)

    Dowling, James E; Alimzhanov, Marat; Bao, Larry; Block, Michael H; Chuaqui, Claudio; Cooke, Emma L; Denz, Christopher R; Hird, Alex; Huang, Shan; Larsen, Nicholas A; Peng, Bo; Pontz, Timothy W; Rivard-Costa, Caroline; Saeh, Jamal Carlos; Thakur, Kumar; Ye, Qing; Zhang, Tao; Lyne, Paul D

    2013-08-01

    In this letter, we describe the design, synthesis, and structure-activity relationship of 5-anilinopyrazolo[1,5-a]pyrimidine inhibitors of CK2 kinase. Property-based optimization of early leads using the 7-oxetan-3-yl amino group led to a series of matched molecular pairs with lower lipophilicity, decreased affinity for human plasma proteins, and reduced binding to the hERG ion channel. Agents in this study were shown to modulate pAKT(S129), a direct substrate of CK2, in vitro and in vivo, and exhibited tumor growth inhibition when administered orally in a murine DLD-1 xenograft. PMID:24900749

  19. Structural features underlying the selectivity of the kinase inhibitors NBC and dNBC: role of a nitro group that discriminates between CK2 and DYRK1A.

    Science.gov (United States)

    Sarno, Stefania; Mazzorana, Marco; Traynor, Ryan; Ruzzene, Maria; Cozza, Giorgio; Pagano, Mario A; Meggio, Flavio; Zagotto, Giuseppe; Battistutta, Roberto; Pinna, Lorenzo A

    2012-02-01

    8-hydroxy-4-methyl-9-nitrobenzo(g)chromen-2-one (NBC) has been found to be a fairly potent ATP site-directed inhibitor of protein kinase CK2 (Ki = 0.22 μM). Here, we show that NBC also inhibits PIM kinases, especially PIM1 and PIM3, the latter as potently as CK2. Upon removal of the nitro group, to give 8-hydroxy-4-methyl-benzo(g)chromen-2-one (here referred to as "denitro NBC", dNBC), the inhibitory power toward CK2 is almost entirely lost (IC(50) > 30 μM) whereas that toward PIM1 and PIM3 is maintained; in addition, dNBC is a potent inhibitor of a number of other kinases that are weakly inhibited or unaffected by NBC, with special reference to DYRK1A whose IC(50) values with NBC and dNBC are 15 and 0.60 μM, respectively. Therefore, the observation that NBC, unlike dNBC, is a potent inducer of apoptosis is consistent with the notion that this effect is mediated by inhibition of endogenous CK2. The structural features underlying NBC selectivity have been revealed by inspecting its 3D structure in complex with the catalytic subunit of Z. mays CK2. The crucial role of the nitro group is exerted both through a direct electrostatic interaction with the side chain of Lys68 and, indirectly, by enhancing the acidic dissociation constant of the adjacent hydroxyl group which interacts with a conserved water molecule in the deepest part of the cavity. By contrast, the very same nitro group is deleterious for the binding to the active site of DYRK1A, as disclosed by molecular docking. This provides the rationale for preferential inhibition of DYRK1A by dNBC. PMID:21720886

  20. CK2: a protein kinase in need of control

    DEFF Research Database (Denmark)

    Guerra, B; Boldyreff, B; Sarno, S;

    1999-01-01

    Protein kinase CK2 is a heterotetrameric alpha2beta2 Ser/Thr protein kinase with some features unusual among the eukaryotic protein kinases: (1) CK2 recognizes phosphoacceptor sites specified by several acidic determinants; (2) CK2 can use both ATP and GTP as phosphoryl donors; and (3) the...... response to nucleotide analogs. The increasing knowledge of CK2 structure-function relationships will allow the design of highly selective inhibitors of this pleiotropic kinase with oncogenic potential....

  1. The crystal structure of the complex of Zea mays alpha subunit with a fragment of human beta subunit provides the clue to the architecture of protein kinase CK2 holoenzyme

    DEFF Research Database (Denmark)

    Battistutta, R; Sarno, S; De Moliner, E;

    2000-01-01

    The crystal structure of a complex between the catalytic alpha subunit of Zea mays CK2 and a 23-mer peptide corresponding the C-terminal sequence 181-203 of the human CK2 regulatory beta subunit has been determined at 3.16-A resolution. The complex, composed of two alpha chains and two peptides...

  2. First inactive conformation of CK2 alpha, the catalytic subunit of protein kinase CK2

    DEFF Research Database (Denmark)

    Raaf, Jennifer; Issinger, Olaf-Georg; Niefind, Karsten

    2009-01-01

    The Ser/Thr kinase casein kinase 2 (CK2) is a heterotetrameric enzyme composed of two catalytic chains (CK2alpha, catalytic subunit of CK2) attached to a dimer of two noncatalytic subunits (CK2beta, noncatalytic subunit of CK2). CK2alpha belongs to the superfamily of eukaryotic protein kinases...

  3. GTP plus water mimic ATP in the active site of protein kinase CK2

    DEFF Research Database (Denmark)

    Niefind, K; Pütter, M; Guerra, B;

    1999-01-01

    The structures of the catalytic subunit of protein kinase CK2 from Zea mays complexed with Mg2+ and with analogs of ATP or GTP were determined to 2.2 A resolution. Unlike most other protein kinases, CK2 from various sources shows 'dual-cosubstrate specificity', that is, the ability to efficiently...... target CK2 or other kinases with this property....

  4. Interaction between CK2α and CK2β, the subunits of protein kinase CK2: thermodynamic contributions of key residues on the CK2α surface

    DEFF Research Database (Denmark)

    Raaf, Jennifer; Bischoff, Nils; Klopffleisch, Karsten; Brunstein, Elena; Olsen, Birgitte B; Vilk, Greg; Litchfield, David W; Issinger, Olaf-Georg; Niefind, Karsten

    2011-01-01

    tetramer. To this end, we used recombinant, C-terminal truncated forms of human CK2 subunits that are able to form the holoenzyme. We analyzed the interaction thermodynamics between the binding of CK2α and CK2β as well as the impact of changes in temperature, pH, and the ionization enthalpy of the buffer...... Leu41 or Phe54 single mutations were most disruptive to binding of CK2β. Additionally, these CK2α mutants retained their kinase activity. Furthermore, the substitution of Leu41 in combination with Phe54 showed that the individual mutations were not additive, suggesting that the cooperative action of...

  5. Development of a high-throughput screening-compatible assay to identify inhibitors of the CK2alpha/CK2beta interaction

    DEFF Research Database (Denmark)

    Hochscherf, Jennifer; Lindenblatt, Dirk; Steinkrueger, Michaela; Yoo, Eungyoung; Ulucan, Oezlem; Herzig, Stefan; Issinger, Olaf-Georg; Helms, Volkhard; Goetz, Claudia; Neundorf, Ines; Niefind, Karsten; Pietsch, Markus

    crystal structure of the Pc/CK2alpha1-335 complex. The dissociation constants obtained in the fluorescence anisotropy assay for binding of all compounds to human CK2alpha1-335 were validated by isothermal titration calorimetry. I-Pc was identified as the tightest binding ligand with a KD value of 240n...

  6. Quinalizarin as a potent, selective and cell-permeable inhibitor of protein kinase CK2.

    Science.gov (United States)

    Cozza, Giorgio; Mazzorana, Marco; Papinutto, Elena; Bain, Jenny; Elliott, Matthew; di Maira, Giovanni; Gianoncelli, Alessandra; Pagano, Mario A; Sarno, Stefania; Ruzzene, Maria; Battistutta, Roberto; Meggio, Flavio; Moro, Stefano; Zagotto, Giuseppe; Pinna, Lorenzo A

    2009-08-01

    Emodin (1,3,8-trihydroxy-6-methyl-anthraquinone) is a moderately potent and poorly selective inhibitor of protein kinase CK2, one of the most pleiotropic serine/threonine protein kinases, implicated in neoplasia and in other global diseases. By virtual screening of the MMS (Molecular Modeling Section) database, we have now identified quinalizarin (1,2,5,8-tetrahydroxyanthraquinone) as an inhibitor of CK2 that is more potent and selective than emodin. CK2 inhibition by quinalizarin is competitive with respect to ATP, with a Ki value of approx. 50 nM. Tested at 1 microM concentration on a panel of 75 protein kinases, quinalizarin drastically inhibits only CK2, with a promiscuity score (11.1), which is the lowest ever reported so far for a CK2 inhibitor. Especially remarkable is the ability of quinalizarin to discriminate between CK2 and a number of kinases, notably DYRK1a (dual-specificity tyrosine-phosphorylated and -regulated kinase), PIM (provirus integration site for Moloney murine leukaemia virus) 1, 2 and 3, HIPK2 (homeodomain-interacting protein kinase-2), MNK1 [MAPK (mitogen-activated protein kinase)-interacting kinase 1], ERK8 (extracellular-signal-regulated kinase 8) and PKD1 (protein kinase D 1), which conversely tend to be inhibited as drastically as CK2 by commercially available CK2 inhibitors. The determination of the crystal structure of a complex between quinalizarin and CK2alpha subunit highlights the relevance of polar interactions in stabilizing the binding, an unusual characteristic for a CK2 inhibitor, and disclose other structural features which may account for the narrow selectivity of this compound. Tested on Jurkat cells, quinalizarin proved able to inhibit endogenous CK2 and to induce apoptosis more efficiently than the commonly used CK2 inhibitors TBB (4,5,6,7-tetrabromo-1H-benzotriazole) and DMAT (2-dimethylamino-4,5,6,7-tetrabromo-1H-benzimidazole). PMID:19432557

  7. The interaction of CK2alpha and CK2beta, the subunits of protein kinase CK2, requires CK2beta in a preformed conformation and is enthalpically driven

    DEFF Research Database (Denmark)

    Raaf, Jennifer; Brunstein, Elena; Issinger, Olaf-Georg; Niefind, Karsten

    2008-01-01

    The protein kinase CK2 (former name: "casein kinase 2") predominantly occurs as a heterotetrameric holoenzyme composed of two catalytic chains (CK2alpha) and two noncatalytic subunits (CK2beta). The CK2beta subunits form a stable dimer to which the CK2alpha monomers are attached independently. In...... contrast to the cyclins in the case of the cyclin-dependent kinases CK2beta is no on-switch of CK2alpha; rather the formation of the CK2 holoenzyme is accompanied with an overall change of the enzyme's profile including a modulation of the substrate specificity, an increase of the thermostability, and an...... allocation of docking sites for membranes and other proteins. In this study we used C-terminal deletion variants of human CK2alpha and CK2beta that were enzymologically fully competent and in particular able to form a heterotetrameric holoenzyme. With differential scanning calorimetry (DSC) we confirmed the...

  8. Protein kinase CK2: evidence for a protein kinase CK2beta subunit fraction, devoid of the catalytic CK2alpha subunit, in mouse brain and testicles

    DEFF Research Database (Denmark)

    Guerra, B; Siemer, S; Boldyreff, B;

    1999-01-01

    The highest CK2 activity was found in mouse testicles and brain, followed by spleen, liver, lung, kidney and heart. The activity values were directly correlated with the protein expression level of the CK2 subunits alpha (catalytic) and beta (regulatory). The alpha' subunit was only detected in...... found for testicles and brain. The amount of CK2beta protein in brain in comparison to the other organs (except testicles) was estimated to be ca. 2-3-fold higher whereas the ratio of CK2beta between testicles and brain was estimated to be 3-4-fold. Results from the immunoprecipitation experiments...... support the notion for the existence of free CK2beta population and/or CK2beta in complex with other protein(s) present in brain and testicles. In all other mouse organs investigated, i.e. heart, lung, liver, kidney and spleen, no comparable amount of free CK2beta was observed. This is the first...

  9. Conformational plasticity of the catalytic subunit of protein kinase CK2 and its consequences for regulation and drug design

    DEFF Research Database (Denmark)

    Niefind, Karsten; Issinger, Olaf-Georg

    2010-01-01

    well to the constitutive activity of the enzyme, meaning, its independence from phosphorylation or other characteristic control factors. Most CK2alpha structures are based on the enzyme from Zea mays, supplemented by an increasing number of human CK2alpha structures. In the latter a surprising...... molecule seems to favour the partially and fully inactive states. This observation may be exploited to design effective and selective CK2 inhibitors....

  10. Structural basis of regulation and substrate specificity of protein kinase CK2 deduced from the modeling of protein-protein interactions

    Directory of Open Access Journals (Sweden)

    Srinivasan N

    2003-05-01

    Full Text Available Abstract Background Protein Kinase Casein Kinase 2 (PKCK2 is an ubiquitous Ser/Thr kinase expressed in all eukaryotes. It phosphorylates a number of proteins involved in various cellular processes. PKCK2 holoenzyme is catalytically active tetramer, composed of two homologous or identical and constitutively active catalytic (α and two identical regulatory (β subunits. The tetramer cannot phosphorylate some substrates that can be phosphorylated by PKCK2α in isolation. The present work explores the structural basis of this feature using computational analysis and modeling. Results We have initially built a model of PKCK2α bound to a substrate peptide with a conformation identical to that of the substrates in the available crystal structures of other kinases complexed with the substrates/ pseudosubstrates. In this model however, the fourth acidic residue in the consensus pattern of the substrate, S/T-X-X-D/E where S/T is the phosphorylation site, did not result in interaction with the active form of PKCK2α and is highly solvent exposed. Interaction of the acidic residue is observed if the substrate peptide adopts conformations as seen in β turn, α helix, or 310 helices. This type of conformation is observed and accommodated well by PKCK2α in calmodulin where the phosphorylation site is at the central helix. PP2A carries sequence patterns for PKCK2α phosphorylation. While the possibility of PP2A being phosphorylated by PKCK2 has been raised in the literature we use the model of PP2A to generate a model of PP2A-PKCK2α complex. PKCK2β undergoes phosphorylation by holoenzyme at the N-terminal region, and is accommodated very well in the limited space available at the substrate-binding site of the holoenzyme while the space is insufficient to accommodate the binding of PP2A or calmodulin in the holoenzyme. Conclusion Charge and shape complimentarity seems to play a role in substrate recognition and binding to PKCK2α, along with the consensus

  11. Resorufin: a lead for a new protein kinase CK2 inhibitor

    DEFF Research Database (Denmark)

    Sandholt, Iben Skjøth; Olsen, Birgitte Brinkmann; Guerra, Barbara;

    2009-01-01

    Screening a natural compound library led to the identification of resorufin as a highly selective and potent inhibitor of protein kinase CK2. Out of 52 kinases tested, only CK2 was inhibited, in contrast to emodin, a structurally related, known CK2 inhibitor that, in addition to CK2, inhibited ten...... within 24 h. Endogenous protein kinase CK2 was inhibited by resorufin by ca. 80% in the three prostate cell lines. In the case of the HCT116 cells, the inhibition was only 40% supporting the notion of cell line-specific selectivity. Moreover, we analysed the effect of resorufin and emodin on selected...... other kinases by 90%. The IC50 values determined for the CK2 holoenzymes were 1.5 mol/l and for the free catalytic subunits ca. 4 mol/l. Altogether four cell lines were subjected to resorufin and emodin treatment. In the case of the three prostate carcinoma cell lines (PC-3, DU-145, LNCaP), 24 h...

  12. The Role of Protein Kinase CK2 in Glioblastoma Development

    OpenAIRE

    Ji, Haitao; Lu, Zhimin

    2013-01-01

    Glioblastoma (GBM) is the most prevalent and malignant primary brain tumor in adults, and its response to current therapies is limited. Protein kinase CK2 is overexpressed in GBM and regulates GBM cell survival, proliferation, and migration and brain tumorigenesis. Targeting CK2 for GBM treatment may benefit GBM patients.

  13. Interactions of protein kinase CK2beta subunit within the holoenzyme and with other proteins

    DEFF Research Database (Denmark)

    Kusk, M; Ahmed, R; Thomsen, B;

    1999-01-01

    Protein kinase CK2 is a ubiquitous, highly conserved protein kinase with a tetrameric alpha2beta2 structure. For the formation of this tetrameric complex a beta-alpha dimer seems to be a prerequisite. Using the two-hybrid system and a series of CK2beta deletion mutants, we mapped domains involved...... in alpha-beta and beta-beta interactions. We also detected an intramolecular beta interaction within the amino acid stretch 132-165. Using CK2beta as a bait in a two-hybrid library screening several new putative cellular partners have been identified, among them the S6 kinase p90rsk, the putative...... tumor suppressor protein Doc-1, the Fas-associated protein FAF1, the mitochondrial translational initiation factor 2 and propionyl CoA carboxylase beta subunit....

  14. Phosphorylation of the regulatory beta-subunit of protein kinase CK2 by checkpoint kinase Chk1: identification of the in vitro CK2beta phosphorylation site

    DEFF Research Database (Denmark)

    Kristensen, Lars P; Larsen, Martin Røssel; Højrup, Peter; Issinger, Olaf-Georg; Guerra, Barbara

    The regulatory beta-subunit of protein kinase CK2 mediates the formation of the CK2 tetrameric form and it has functions independent of CK2 catalytic subunit through interaction with several intracellular proteins. Recently, we have shown that CK2beta associates with the human checkpoint kinase Chk......1. In this study, we show that Chk1 specifically phosphorylates in vitro the regulatory beta-subunit of CK2. Chymotryptic peptides and mutational analyses have revealed that CK2beta is phosphorylated at Thr213. Formation of a stable complex between CK2beta and Chk1 is not affected by the...

  15. Inhibition of CK2 Activity by TCDD via Binding to ATP-competitive Binding Site of Catalytic Subunit:Insight from Computational Studies

    Institute of Scientific and Technical Information of China (English)

    XU Xian-jin; CANNISTRARO Salvatore; BIZZARRI Anna-rita; ZENG Yi; CHEN Wei-zu; WANG Cun-xin

    2013-01-01

    Alternative mechanisms of toxic effects induced by 2,3,7,8-tetrachlorodibenzo-p-dioxin(TCDD),instead of the binding to aryl hydrocarbon receptor(AhR),have been taken into consideration.It has been recently shown that TCDD reduces rapidly the activity of CK2(casein kinase Ⅱ) both in vivo and in vitro.It is found that TCDD has high molecular similarities to the known inhibitors of CK2 catalytic subunit(CK2α).This suggests that TCDD could also be an ATP-competitive inhibitor of CK2α.In this work,docking TCDD to CK2 was carried out based on the two structures of CK2α from maize and human,respectively.The binding free energies of the predicted CK2α-TCDD complexes estimated by the molecular mechanics/Poisson-Boltzmann surface area(MM/PBSA) method are from -85.1 kJ/mol to-114.3 kJ/mol for maize and are from-96.1 kJ/mol to-118.2 kJ/mol for human,which are comparable to those estimated for the known inhibitor and also ATP with CK2α.The energetic analysis also reveals that the van der Waals interaction is the dominant contribution to the binding free energy.These results are also useful for designing new drugs for a target of overexpressing CK2 in cancers.

  16. DEVIATIONS OF STRUCTURE BETWEEN BULK AND FIBER GLASSES

    OpenAIRE

    Stockhorst, H.; Brückner, R.

    1982-01-01

    Fibers from a silicate and a metaphosphate glass, produced by the nozzle drawing process are investigated with respect to their structural properties compared with bulk glass. The drawing parameters - nozzle temperature, mass flow and drawing speed - are varied in a wide range. The following properties are investigated : fiber density, thermal expansion-contraction-behaviour and optical birefringence. All these properties show characteristic deviations from the bulk glass values depending str...

  17. Crystallographic evidence for deviating C3b structure?

    OpenAIRE

    Janssen, B.J.C.; Read, R.J.; Brunger, A. T.; Gros, P

    2007-01-01

    Activation of C3 into C3b is a critical step in the complement immune response against pathogenic, immunogenic and apoptotic particles. Ajees et al.1 report a crystal structure of C3b, which deviates from the one reported by Janssen et al.2 and Wiesmann et al.3. Analysis of the data deposited by Ajees et al.1 reveals features that are inconsistent with known physical properties of macromolecular structures and their diffraction data. Therefore, Ajees et al. do not provide substantial evidence...

  18. Urolithin as a converging scaffold linking ellagic acid and coumarin analogues: design of potent protein kinase CK2 inhibitors.

    Science.gov (United States)

    Cozza, Giorgio; Gianoncelli, Alessandra; Bonvini, Paolo; Zorzi, Elisa; Pasquale, Riccardo; Rosolen, Angelo; Pinna, Lorenzo A; Meggio, Flavio; Zagotto, Giuseppe; Moro, Stefano

    2011-12-01

    Casein kinase 2 (CK2) is a ubiquitous, essential, and highly pleiotropic protein kinase; its abnormally high constitutive activity is suspected to underlie its pathogenic potential in neoplasia and other relevant diseases. Previously, using different in silico screening approaches, two potent and selective CK2 inhibitors were identified by our group: ellagic acid, a naturally occurring tannic acid derivative (K(i)=20 nM) and 3,8-dibromo-7-hydroxy-4-methylchromen-2-one (DBC, K(i)=60 nM). Comparing the crystallographic binding modes of both ellagic acid and DBC, an X-ray structure-driven merging approach was taken to design novel CK2 inhibitors with improved target affinity. A urolithin moiety is proposed as a possible bridging scaffold between the two known CK2 inhibitors, ellagic acid and DBC. Optimization of urolithin A as the bridging moiety led to the identification of 4-bromo-3,8-dihydroxy-benzo[c]chromen-6-one as a novel, potent and selective CK2 inhibitor, which shows a K(i) value of 7 nM against the protein kinase, representing a significant improvement in affinity for the target compared with the two parent fragments. PMID:21972104

  19. Structure of deviations from optimality in biological systems

    OpenAIRE

    Pérez-Escudero, Alfonso; Rivera-Alba, Marta; G. de Polavieja, Gonzalo

    2009-01-01

    Optimization theory has been used to analyze evolutionary adaptation. This theory has explained many features of biological systems, from the genetic code to animal behavior. However, these systems show important deviations from optimality. Typically, these deviations are large in some particular components of the system, whereas others seem to be almost optimal. Deviations from optimality may be due to many factors in evolution, including stochastic effects and finite time, that may not allo...

  20. Involvement of Plasmodium falciparum protein kinase CK2 in the chromatin assembly pathway

    Directory of Open Access Journals (Sweden)

    Dastidar Eeshita G

    2012-01-01

    Full Text Available Abstract Background Protein kinase CK2 is a pleiotropic serine/threonine protein kinase with hundreds of reported substrates, and plays an important role in a number of cellular processes. The cellular functions of Plasmodium falciparum CK2 (PfCK2 are unknown. The parasite's genome encodes one catalytic subunit, PfCK2α, which we have previously shown to be essential for completion of the asexual erythrocytic cycle, and two putative regulatory subunits, PfCK2β1 and PfCK2β2. Results We now show that the genes encoding both regulatory PfCK2 subunits (PfCK2β1 and PfCK2β2 cannot be disrupted. Using immunofluorescence and electron microscopy, we examined the intra-erythrocytic stages of transgenic parasite lines expressing hemagglutinin (HA-tagged catalytic and regulatory subunits (HA-CK2α, HA-PfCK2β1 or HA-PfCK2β2, and localized all three subunits to both cytoplasmic and nuclear compartments of the parasite. The same transgenic parasite lines were used to purify PfCK2β1- and PfCK2β2-containing complexes, which were analyzed by mass spectrometry. The recovered proteins were unevenly distributed between various pathways, with a large proportion of components of the chromatin assembly pathway being present in both PfCK2β1 and PfCK2β2 precipitates, implicating PfCK2 in chromatin dynamics. We also found that chromatin-related substrates such as nucleosome assembly proteins (Naps, histones, and two members of the Alba family are phosphorylated by PfCK2α in vitro. Conclusions Our reverse-genetics data show that each of the two regulatory PfCK2 subunits is required for completion of the asexual erythrocytic cycle. Our interactome study points to an implication of PfCK2 in many cellular pathways, with chromatin dynamics being identified as a major process regulated by PfCK2. This study paves the way for a kinome-wide interactomics-based approach to elucidate protein kinase function in malaria parasites.

  1. Isomeric mono-, di-, and tri-bromobenzo-1H-triazoles as inhibitors of human protein kinase CK2α.

    Directory of Open Access Journals (Sweden)

    Romualda Wąsik

    Full Text Available To further clarify the role of the individual bromine atoms of 4,5,6,7-tetrabromotriazole (TBBt, a relatively selective inhibitor of protein kinase CK2, we have examined the inhibition (IC(50 of human CK2α by the two mono-, the four di-, and the two tri- bromobenzotriazoles relative to that of TBBt. Halogenation of the central vicinal C(5/C(6 atoms proved to be a key factor in enhancing inhibitory activity, in that 5,6-di-Br(2Bt and 4,5,6-Br(3Bt were almost as effective inhibitors as TBBt, notwithstanding their marked differences in pK(a for dissociation of the triazole proton. The decrease in pK(a on halogenation of the peripheral C(4/C(7 atoms virtually nullifies the gain due to hydrophobic interactions, and does not lead to a decrease in IC(50. Molecular modeling of structures of complexes of the ligands with the enzyme, as well as QSAR analysis, pointed to a balance of hydrophobic and electrostatic interactions as a discriminator of inhibitory activity. The role of halogen bonding remains debatable, as originally noted for the crystal structure of TBBt with CK2α (pdb1j91. Finally we direct attention to the promising applicability of our series of well-defined halogenated benzotriazoles to studies on inhibition of kinases other than CK2.

  2. Fas-associated factor 1 interacts with protein kinase CK2 in vivo upon apoptosis induction

    DEFF Research Database (Denmark)

    Guerra, B; Boldyreff, B; Issinger, O G

    2001-01-01

    We show here that in several different cell lines protein kinase CK2 and Fas-associated factor 1 (FAF1) exist together in a complex which is stable to high monovalent salt concentration. The CK2/FAF1 complex formation is significantly increased after induction of apoptosis with various DNA damaging...... view that protein kinase CK2 plays an important role in certain steps of apoptosis....

  3. CK2 activity is modulated by growth rate in Saccharomyces cerevisiae

    International Nuclear Information System (INIS)

    Research highlights: → CK2 subunits are nuclear both in glucose and in ethanol growing yeast cells. → CK2 activity is modulated in S. cerevisiae. → CK2 activity is higher in conditions supporting higher growth rates. → Vmax is higher in faster growing cells, while Km is not affected. -- Abstract: CK2 is a highly conserved protein kinase controlling different cellular processes. It shows a higher activity in proliferating mammalian cells, in various types of cancer cell lines and tumors. The findings presented herein provide the first evidence of an in vivo modulation of CK2 activity, dependent on growth rate, in Saccharomyces cerevisiae. In fact, CK2 activity, assayed on nuclear extracts, is shown to increase in exponential growing batch cultures at faster growth rate, while localization of catalytic and regulatory subunits is not nutritionally modulated. Differences in intracellular CK2 activity of glucose- and ethanol-grown cells appear to depend on both increase in molecule number and kcat. Also in chemostat cultures nuclear CK2 activity is higher in faster growing cells providing the first unequivocal demonstration that growth rate itself can affect CK2 activity in a eukaryotic organism.

  4. Protein kinase CK2 inhibition induces cell death via early impact on mitochondrial function*

    Science.gov (United States)

    Qaiser, Fatima; Trembley, Janeen H.; Kren, Betsy T.; Wu, Jing-Jiang; Naveed, A. Khaliq; Ahmed, Khalil

    2014-01-01

    CK2 (official acronym for casein kinase 2 or II) is a potent suppressor of apoptosis in response to diverse apoptotic stimuli —thus its molecular downregulation or activity inhibition results in potent induction of cell death. CK2 downregulation is known to impact mitochondrial apoptotic circuitry but the underlying mechanism(s) remain unclear. Utilizing prostate cancer cell lines subjected to CK2-specific inhibitors which cause loss of cell viability, we have found that CK2 inhibition in cells causes rapid early decrease in mitochondrial membrane potential (Δψm). Cells treated with the CK2 inhibitors TBB (4,5,6,7-tetrabromobenzotriazole) or TBCA (tetrabromocinnamic acid) demonstrate changes in Δψm which become apparent within 2 h, i.e., significantly prior to evidence of activation of other mitochondrial apoptotic signals whose temporal expression ensues subsequent to loss of Δψm. Further, we have demonstrated the presence of CK2 in purified mitochondria and it appears that the effect on Δψm evoked by inhibition of CK2 may involve mitochondrial localized CK2. Results also suggest that alterations in Ca2+ signaling may be involved in the CK2 mediated regulation of Δψm and mitochondrial permeability. Thus, we propose that a key mechanism of CK2 impact on mitochondrial apoptotic circuitry and cell death involves early loss of Δψm which may be a primary trigger for apoptotic signaling and cell death resulting from CK2 inhibition. PMID:25043911

  5. Expression, purification and crystallization of the catalytic subunit of protein kinase CK2 from Zea mays

    DEFF Research Database (Denmark)

    Guerra, B; Niefind, K; Pinna, L A;

    1998-01-01

    The catalytic (alpha) subunit of protein kinase CK2 (CK2alpha) was originally cloned and overexpressed in the Escherichia coli strain pT7-7/BL21(DE3). The protein has been purified to homogeneity and crystallized. The crystals belong to the monoclinic space group C2, they have unit-cell parameters...

  6. Expression and characterization of a recombinant maize CK-2 alpha subunit

    DEFF Research Database (Denmark)

    Boldyreff, B; Meggio, F; Dobrowolska, G;

    1993-01-01

    CKIIB, one of the CK-2 like enzymes which have been isolated from maize, has been shown to be a monomeric enzyme that cross-reacts with anti CK-2 alpha specific antibodies suggesting a possible relationship between the two proteins (Dobrowolska et al. (1992) Eur. J. Biochem. 204, 299-303). In ord...

  7. A subnanomolar fluorescent probe for protein kinase CK2 interaction studies

    DEFF Research Database (Denmark)

    Enkvist, Erki; Viht, Kaido; Bischoff, Nils;

    2012-01-01

    -1502 with PromoFluor-647 gave the fluorescent probe ARC-1504 that possessed subnanomolar affinity towards both CK2α and the holoenzyme. The probe was used in a fluorescence anisotropy-based binding assay to measure the concentration of CK2α and characterize non-labelled ligands binding to the active...

  8. Purification and characterization of recombinant protein kinase CK2 from Zea mays expressed in Escherichia coli

    DEFF Research Database (Denmark)

    Riera, Marta; Pages, Montserrat; Issinger, Olaf Georg;

    2003-01-01

    Recombinant protein kinase subunits rmCK2alpha-1 and rmCK2beta-1 from Zea mays were expressed separately in Escherichia coli and assembled to a fully active tetrameric holoenzyme complex in vitro. The obtained maize holoenzyme was purified to homogeneity, biochemically characterized, and compared...

  9. A-Raf kinase is a new interacting partner of protein kinase CK2 beta subunit

    DEFF Research Database (Denmark)

    Boldyreff, B; Issinger, O G

    1997-01-01

    In a search for protein kinase CK2 beta subunit binding proteins using the two-hybrid system, more than 1000 positive clones were isolated. Beside clones for the alpha' and beta subunit of CK2, there were clones coding for a so far unknown protein, whose partial cDNA sequence was already deposited...... in the EMBL database under the accession numbers R08806 and Z17360, for the ribosomal protein L5 and for A-Raf kinase. All isolated clones except the one for CK2 beta showed no interaction with the catalytic alpha subunit of CK2. A-Raf kinase is a new interesting partner of CK2 beta. The isolated A...

  10. In vitro and in vivo assays of protein kinase CK2 activity.

    Science.gov (United States)

    Prudent, Renaud; Sautel, Céline F; Moucadel, Virginie; Laudet, Béatrice; Filhol, Odile; Cochet, Claude

    2010-01-01

    Protein kinase CK2 (formerly casein kinase 2) is recognized as a central component in the control of the cellular homeostasis; however, much remains unknown regarding its regulation and its implication in cellular transformation and carcinogenesis. Moreover, study of CK2 function and regulation in a cellular context is complicated by the dynamic multisubunit architecture of this protein kinase. Although a number of robust techniques are available to assay CK2 activity in vitro, there is a demand for sensitive and specific assays to evaluate its activity in living cells. We hereby provide a detailed description of several assays for monitoring the CK2 activity and its subunit interaction in living cells. The guidelines presented herein should enable researchers in the field to establish strategies for cellular screenings of CK2 inhibitors. PMID:21050938

  11. Neutron diffraction investigation of structural deviations in cement clinker

    International Nuclear Information System (INIS)

    Full text: The effects of refining the atomic positions in cement clinker phases using Rietveld analysis of neutron powder diffraction data was investigated. Changes in phase quantification and Bragg-R factors of phases after atomic position refinement are reported. A previous x-ray study, briefly reported that less than a 1% (average) alteration to bond distances in a refinement resulted in an approximately 25% improvement in the fits of a tricalcium silicate phase. In this neutron study, relatively minor adjustments to the structures resulted in decreased R-Bragg factors of tricalcium silicate phases, with very little changes to the overall bond distances. Rietveld refinement is commonly used for the phase quantification of cement clinker, which is difficult due to the complexity of component phases. Phases typically present in cement clinker are tricalcium silicate (Ca3SiO5), dicalcium silicate (Ca2SiO4), tricalcium aluminate (Ca3AI2O6), and tetracalcium aluminoferrite (Ca2(AI2O3)x(Fe2O3)i-x. Rietveld analysis is complicated by the polymorphic modification of these phases. At least seven tricalcium silicate polymorphs exist, three of which have structures that are commonly used in the Rietveld analysis of clinkers. Only one dicalcium silicate type has been shown likely to be present. Tricalcium aluminate has three polymorphs, all found in clinker, whilst tetracalcium aluminoferrite can appear with a varying AI:Fe ratio. Full-profile Rietveld methods have the ability to define the tricalcium silicate form. It is usual to include a polymorph of tricalcium silicate in each of the three crystal systems encountered when beginning a refinement of clinker data, and then exclude the crystal system(s) not found. Care must be taken so as not to enable one crystal system to alter itself to compensate for another. Quantification by diffraction methods of the tricalcium and dicalcium silicate phases in mixtures, such as in clinker, is further complicated by the wide range of

  12. Dominant-negative CK2alpha induces potent effects on circadian rhythmicity.

    Directory of Open Access Journals (Sweden)

    Elaine M Smith

    2008-01-01

    Full Text Available Circadian clocks organize the precise timing of cellular and behavioral events. In Drosophila, circadian clocks consist of negative feedback loops in which the clock component PERIOD (PER represses its own transcription. PER phosphorylation is a critical step in timing the onset and termination of this feedback. The protein kinase CK2 has been linked to circadian timing, but the importance of this contribution is unclear; it is not certain where and when CK2 acts to regulate circadian rhythms. To determine its temporal and spatial functions, a dominant negative mutant of the catalytic alpha subunit, CK2alpha(Tik, was targeted to circadian neurons. Behaviorally, CK2alpha(Tik induces severe period lengthening (approximately 33 h, greater than nearly all known circadian mutant alleles, and abolishes detectable free-running behavioral rhythmicity at high levels of expression. CK2alpha(Tik, when targeted to a subset of pacemaker neurons, generates period splitting, resulting in flies exhibiting both long and near 24-h periods. These behavioral effects are evident even when CK2alpha(Tik expression is induced only during adulthood, implicating an acute role for CK2alpha function in circadian rhythms. CK2alpha(Tik expression results in reduced PER phosphorylation, delayed nuclear entry, and dampened cycling with elevated trough levels of PER. Heightened trough levels of per transcript accompany increased protein levels, suggesting that CK2alpha(Tik disturbs negative feedback of PER on its own transcription. Taken together, these in vivo data implicate a central role of CK2alpha function in timing PER negative feedback in adult circadian neurons.

  13. The CK2 kinase stabilizes CLOCK and represses its activity in the Drosophila circadian oscillator.

    Directory of Open Access Journals (Sweden)

    Aron Szabó

    Full Text Available Phosphorylation is a pivotal regulatory mechanism for protein stability and activity in circadian clocks regardless of their evolutionary origin. It determines the speed and strength of molecular oscillations by acting on transcriptional activators and their repressors, which form negative feedback loops. In Drosophila, the CK2 kinase phosphorylates and destabilizes the PERIOD (PER and TIMELESS (TIM proteins, which inhibit CLOCK (CLK transcriptional activity. Here we show that CK2 also targets the CLK activator directly. Downregulating the activity of the catalytic α subunit of CK2 induces CLK degradation, even in the absence of PER and TIM. Unexpectedly, the regulatory β subunit of the CK2 holoenzyme is not required for the regulation of CLK stability. In addition, downregulation of CK2α activity decreases CLK phosphorylation and increases per and tim transcription. These results indicate that CK2 inhibits CLK degradation while reducing its activity. Since the CK1 kinase promotes CLK degradation, we suggest that CLK stability and transcriptional activity result from counteracting effects of CK1 and CK2.

  14. Exploiting the repertoire of CK2 inhibitors to target DYRK and PIM kinases.

    Science.gov (United States)

    Cozza, Giorgio; Sarno, Stefania; Ruzzene, Maria; Girardi, Cristina; Orzeszko, Andrzej; Kazimierczuk, Zygmunt; Zagotto, Giuseppe; Bonaiuto, Emanuela; Di Paolo, Maria Luisa; Pinna, Lorenzo A

    2013-07-01

    Advantage has been taken of the relative promiscuity of commonly used inhibitors of protein kinase CK2 to develop compounds that can be exploited for the selective inhibition of druggable kinases other than CK2 itself. Here we summarize data obtained by altering the scaffold of CK2 inhibitors to give rise to novel selective inhibitors of DYRK1A and to a powerful cell permeable dual inhibitor of PIM1 and CK2. In the former case one of the new compounds, C624 (naphto [1,2-b]benzofuran-5,9-diol) displays a potency comparable to that of the first-in-class DYRK1A inhibitor, harmine, lacking however the drawback of drastically inhibiting monoamine oxidase-A (MAO-A) as harmine does. On the other hand the promiscuous CK2 inhibitor 4,5,6,7-tetrabromo-1H-benzimidazole (TBI,TBBz) has been derivatized with a sugar moiety to generate a 1-(β-D-2'-deoxyribofuranosyl)-4,5,6,7-tetrabromo-1H-benzimidazole (TDB) compound which inhibits PIM1 and CK2 with comparably high efficacy (IC50 values<100nM) and remarkable selectivity. TDB, unlike other dual PIM1/CK2 inhibitors described in the literature is readily cell permeable and displays a cytotoxic effect on cancer cells consistent with concomitant inhibition of both its onco-kinase targets. This article is part of a Special Issue entitled: Inhibitors of Protein Kinases (2012). PMID:23360763

  15. Quinalizarin as a potent, selective and cell permeable inhibitor of protein kinase CK2

    OpenAIRE

    Cozza, Giorgio; Mazzorana, Marco; Papinutto, Elena; Bain, Jenny; Elliott, Matthew; Di Maira, Giovanni; Gianoncelli, Alessandra; Pagano, Mario A.; Sarno, Stefania; Ruzzene, Maria; Battistutta, Roberto; Meggio, Flavio; Moro, Stefano; Zagotto, Giuseppe; Pinna, Lorenzo A.

    2009-01-01

    Abstract Emodin (1,3,8-trihydroxy-6-methyl-anthraquinone) is a moderately potent and poorly selective inhibitor of CK2, one of the most pleiotropic Ser/Thr protein kinases, implicated in neoplasia and in other global diseases. By virtual screening of the MMS database we have now identified quinalizarin (1,2,5,8-tetrahydroxy-anthraquinone) as an inhibitor of CK2 more potent and selective than emodin. CK2 inhibition by quinalizarin is competitive with respect to ATP, with a Ki value ...

  16. Asymmetric expression of protein kinase CK2 subunits in human kidney tumors

    DEFF Research Database (Denmark)

    Stalter, G; Siemer, S; Becht, E; Ziegler, M; Remberger, K; Issinger, O G

    1994-01-01

    of protein kinase CK2 alpha in tumors/normal tissue (T/N) was 1.58 and that of the protein kinase CK2 beta (T/N) was 2.65. The data suggest that the generally described increase in protein kinase CK2 activity in tumor cells may to some extent result from a deregulation in subunit biosynthesis or...... degradation. This at least partly owing to the presence of excess enzymatically active protein kinase alpha-subunit but also to a significantly higher presence of the non-catalytic beta-subunit....

  17. Structural deviation calibration and parameters obtaining algorithm for flat panel detector CT system

    International Nuclear Information System (INIS)

    Deviation of geometric parameter from its design value of flat panel detector computed tomography (CT) would result in image quality degradation. A structural deviation calibration and parameters obtaining algorithm based on projections was developed to improve the accuracy. The algorithm uses a simple calibration phantom and serial projections to adjust the system structure and analytically estimate the geometric CT parameters. Calculations demonstrate that the algorithm is very accurate with the error less than 0.5%, and experiments show high quality images. (authors)

  18. p21WAF1/CIP1 interacts with protein kinase CK2

    DEFF Research Database (Denmark)

    Götz, C; Wagner, P; Issinger, O G;

    1996-01-01

    p21WAF1/CIP1 which belongs to a class of regulatory proteins that interact with cyclin dependent kinases is a potent inhibitor of these kinases. The inhibition of the cyclin dependent kinases induces an arrest of cells in the G phase of the cell cycle. In addition p21WAF1/CIP1 associates with PCNA...... and inhibits DNA replication. Here, we show that p21WAF1/CIP1 binds to the regulatory beta-subunit of protein kinase CK2 but not to the catalytic alpha-subunit. Binding of p21WAF1/CIP1 down regulates the kinase activity of CK2 with respect to the phosphorylation of the beta-subunit of CK2, casein and...... the C-terminus of p53. This study demonstrates a new binding partner for the regulatory beta-subunit of protein kinase CK2 which regulates the activity of the holoenzyme....

  19. Design, validation and efficacy of bisubstrate inhibitors specifically affecting ecto-CK2 kinase activity.

    Science.gov (United States)

    Cozza, Giorgio; Zanin, Sofia; Sarno, Stefania; Costa, Elena; Girardi, Cristina; Ribaudo, Giovanni; Salvi, Mauro; Zagotto, Giuseppe; Ruzzene, Maria; Pinna, Lorenzo A

    2015-11-01

    By derivatizing the purely competitive CK2 inhibitor N1-(4,5,6,7-tetrabromo-1H-benzimidazol-2-yl)-propane-1,3-diamine (K137) at its 3-amino position with a peptidic fragment composed of three or four glutamic or aspartic acid residues, a new family of bisubstrate inhibitors has been generated whose ability to simultaneously interact with both the ATP and the phosphoacceptor substrate-binding sites has been probed by running mixed competition kinetics and by mutational mapping of the kinase residues implicated in substrate recognition. The most effective bisubstrate inhibitor, K137-E4, interacts with three functional regions of the kinase: the hydrophobic pocket close to the ATP-binding site, the basic residues of the p+1 loop that recognizes the acidic determinant at position n+1 and the basic residues of α-helixC that recognize the acidic determinant at position n+3. Compared with the parent inhibitor (K137), K137-E4 is severalfold more potent (IC50 25 compared with 130 nM) and more selective, failing to inhibit any other kinase as drastically as CK2 out of 140 enzymes, whereas 35 kinases are inhibited more potently than CK2 by K137. K137-E4 is unable to penetrate the cell and to inhibit endogenous CK2, its pro-apoptotic efficacy being negligible compared with cell-permeant inhibitors; however, it readily inhibits ecto-CK2 on the outer cell surface, reducing the phosphorylation of several external phosphoproteins. Inhibition of ecto-CK2 by K137-E4 is accompanied by a slower migration of cancer cells as judged by wound healing assays. On the basis of the cellular responses to K137-E4, we conclude that ecto-CK2 is implicated in cell motility, whereas its contribution to the pro-survival role of CK2 is negligible. PMID:26349539

  20. Association of CK2 with Polycomb complexes and its functional implications

    OpenAIRE

    Chandler, H.

    2013-01-01

    Polycomb group (PcG) proteins are important for establishing the patterns of gene expression in different cell types and are critical for the maintenance of pluripotency. They participate in multi-component complexes, such as Polycomb repressive complex 1 (PRC1), which modify, and bind to, histone tails. A number of auxiliary proteins consistently associate with PRC1, including the three subunits of protein kinase CK2 (CK2). The work described in this thesis investigates the interaction of CK...

  1. RP1 is a phosphorylation target of CK2 and is involved in cell adhesion.

    Directory of Open Access Journals (Sweden)

    Frank Stenner

    Full Text Available RP1 (synonym: MAPRE2, EB2 is a member of the microtubule binding EB1 protein family, which interacts with APC, a key regulatory molecule in the Wnt signalling pathway. While the other EB1 proteins are well characterized the cellular function and regulation of RP1 remain speculative to date. However, recently RP1 has been implicated in pancreatic cancerogenesis. CK2 is a pleiotropic kinase involved in adhesion, proliferation and anti-apoptosis. Overexpression of protein kinase CK2 is a hallmark of many cancers and supports the malignant phenotype of tumor cells. In this study we investigate the interaction of protein kinase CK2 with RP1 and demonstrate that CK2 phosphorylates RP1 at Ser(236 in vitro. Stable RP1 expression in cell lines leads to a significant cleavage and down-regulation of N-cadherin and impaired adhesion. Cells expressing a Phospho-mimicking point mutant RP1-ASP(236 show a marked decrease of adhesion to endothelial cells under shear stress. Inversely, we found that the cells under shear stress downregulate endogenous RP1, most likely to improve cellular adhesion. Accordingly, when RP1 expression is suppressed by shRNA, cells lacking RP1 display significantly increased cell adherence to surfaces. In summary, RP1 phosphorylation at Ser(236 by CK2 seems to play a significant role in cell adhesion and might initiate new insights in the CK2 and EB1 family protein association.

  2. Protein kinase CK2 modulates IL-6 expression in inflammatory breast cancer

    Energy Technology Data Exchange (ETDEWEB)

    Drygin, Denis, E-mail: ddrygin@cylenepharma.com; Ho, Caroline B.; Omori, Mayuko; Bliesath, Joshua; Proffitt, Chris; Rice, Rachel; Siddiqui-Jain, Adam; O' Brien, Sean; Padgett, Claire; Lim, John K.C.; Anderes, Kenna; Rice, William G.; Ryckman, David

    2011-11-11

    Highlights: Black-Right-Pointing-Pointer We examine the potential cross-talk between CK2 and IL-6. Black-Right-Pointing-Pointer Inhibition of CK2 by siRNA or CX-4945 inhibits expression of IL-6 in models of IBC. Black-Right-Pointing-Pointer Treatment of IBC patient in the clinic with CX-4945 reduces her IL-6 plasma levels. Black-Right-Pointing-Pointer We demonstrate that CK2 is a potential therapeutic target for IL-6 driven diseases. -- Abstract: Inflammatory breast cancer is driven by pro-angiogenic and pro-inflammatory cytokines. One of them Interleukin-6 (IL-6) is implicated in cancer cell proliferation and survival, and promotes angiogenesis, inflammation and metastasis. While IL-6 has been shown to be upregulated by several oncogenes, the mechanism behind this phenomenon is not well characterized. Here we demonstrate that the pleotropic Serine/Threonine kinase CK2 is implicated in the regulation of IL-6 expression in a model of inflammatory breast cancer. We used siRNAs targeted toward CK2 and a selective small molecule inhibitor of CK2, CX-4945, to inhibit the expression and thus suppress the secretion of IL-6 in in vitro as well as in vivo models. Moreover, we report that in a clinical trial, CX-4945 was able to dramatically reduce IL-6 levels in plasma of an inflammatory breast cancer patient. Our data shed a new light on the regulation of IL-6 expression and position CX-4945 and potentially other inhibitors of CK2, for the treatment of IL-6-driven cancers and possibly other diseases where IL-6 is instrumental, including rheumatoid arthritis.

  3. Protein kinase CK2 interacts with Chk2 and phosphorylates Mre11 on serine 649

    International Nuclear Information System (INIS)

    The Mre11-Rad50-Nbs1 protein complex has been known to be involved in a variety of DNA metabolic events that involve DNA double-strand breaks (DSBs). The phosphorylation of Mre11 is increased in response to ionizing radiation, which suggests that phosphorylation of Mre11 may be an important regulatory mechanism of this complex. Mre11-phosphorylating kinase activities were observed in Chk2 immunoprecipitates and HeLa nuclear extracts. Through the tandem affinity tagging system and conventional chromatography, this kinase was purified and identified as protein kinase CK2. CK2 phosphorylates Mre11 in vitro. In vitro kinase assay with a series of truncated Mre11 proteins as substrates for CK2 and site-directed mutagenesis showed that serine 649 of Mre11 is mainly phosphorylated by CK2 in vitro. In vivo labeling and phosphopeptide mapping analysis revealed that this phosphorylation occurs in vivo. These data implicate CK2 as a potential upstream regulator of Mre11 function

  4. CRY Drives Cyclic CK2-Mediated BMAL1 Phosphorylation to Control the Mammalian Circadian Clock

    Science.gov (United States)

    Tamaru, Teruya; Hattori, Mitsuru; Honda, Kousuke; Nakahata, Yasukazu; Sassone-Corsi, Paolo; van der Horst, Gijsbertus T. J.; Ozawa, Takeaki; Takamatsu, Ken

    2015-01-01

    Intracellular circadian clocks, composed of clock genes that act in transcription-translation feedback loops, drive global rhythmic expression of the mammalian transcriptome and allow an organism to anticipate to the momentum of the day. Using a novel clock-perturbing peptide, we established a pivotal role for casein kinase (CK)-2-mediated circadian BMAL1-Ser90 phosphorylation (BMAL1-P) in regulating central and peripheral core clocks. Subsequent analysis of the underlying mechanism showed a novel role of CRY as a repressor for protein kinase. Co-immunoprecipitation experiments and real-time monitoring of protein–protein interactions revealed that CRY-mediated periodic binding of CK2β to BMAL1 inhibits BMAL1-Ser90 phosphorylation by CK2α. The FAD binding domain of CRY1, two C-terminal BMAL1 domains, and particularly BMAL1-Lys537 acetylation/deacetylation by CLOCK/SIRT1, were shown to be critical for CRY-mediated BMAL1–CK2β binding. Reciprocally, BMAL1-Ser90 phosphorylation is prerequisite for BMAL1-Lys537 acetylation. We propose a dual negative-feedback model in which a CRY-dependent CK2-driven posttranslational BMAL1–P-BMAL1 loop is an integral part of the core clock oscillator. PMID:26562092

  5. CRY Drives Cyclic CK2-Mediated BMAL1 Phosphorylation to Control the Mammalian Circadian Clock.

    Directory of Open Access Journals (Sweden)

    Teruya Tamaru

    Full Text Available Intracellular circadian clocks, composed of clock genes that act in transcription-translation feedback loops, drive global rhythmic expression of the mammalian transcriptome and allow an organism to anticipate to the momentum of the day. Using a novel clock-perturbing peptide, we established a pivotal role for casein kinase (CK-2-mediated circadian BMAL1-Ser90 phosphorylation (BMAL1-P in regulating central and peripheral core clocks. Subsequent analysis of the underlying mechanism showed a novel role of CRY as a repressor for protein kinase. Co-immunoprecipitation experiments and real-time monitoring of protein-protein interactions revealed that CRY-mediated periodic binding of CK2β to BMAL1 inhibits BMAL1-Ser90 phosphorylation by CK2α. The FAD binding domain of CRY1, two C-terminal BMAL1 domains, and particularly BMAL1-Lys537 acetylation/deacetylation by CLOCK/SIRT1, were shown to be critical for CRY-mediated BMAL1-CK2β binding. Reciprocally, BMAL1-Ser90 phosphorylation is prerequisite for BMAL1-Lys537 acetylation. We propose a dual negative-feedback model in which a CRY-dependent CK2-driven posttranslational BMAL1-P-BMAL1 loop is an integral part of the core clock oscillator.

  6. CK2 phosphorylates Sec31 and regulates ER-To-Golgi trafficking.

    Directory of Open Access Journals (Sweden)

    Mayuko Koreishi

    Full Text Available Protein export from the endoplasmic reticulum (ER is an initial and rate-limiting step of molecular trafficking and secretion. This is mediated by coat protein II (COPII-coated vesicles, whose formation requires small GTPase Sar1 and 6 Sec proteins including Sec23 and Sec31. Sec31 is a component of the outer layer of COPII coat and has been identified as a phosphoprotein. The initiation and promotion of COPII vesicle formation is regulated by Sar1; however, the mechanism regulating the completion of COPII vesicle formation followed by vesicle release is largely unknown. Hypothesizing that the Sec31 phosphorylation may be such a mechanism, we identified phosphorylation sites in the middle linker region of Sec31. Sec31 phosphorylation appeared to decrease its association with ER membranes and Sec23. Non-phosphorylatable mutant of Sec31 stayed longer at ER exit sites and bound more strongly to Sec23. We also found that CK2 is one of the kinases responsible for Sec31 phosphorylation because CK2 knockdown decreased Sec31 phosphorylation, whereas CK2 overexpression increased Sec31 phosphorylation. Furthermore, CK2 knockdown increased affinity of Sec31 for Sec23 and inhibited ER-to-Golgi trafficking. These results suggest that Sec31 phosphorylation by CK2 controls the duration of COPII vesicle formation, which regulates ER-to-Golgi trafficking.

  7. Modulation of human checkpoint kinase Chk1 by the regulatory beta-subunit of protein kinase CK2

    DEFF Research Database (Denmark)

    Guerra, Barbara; Issinger, Olaf-Georg; Wang, Jean Y J

    2003-01-01

    Protein kinase CK2 is a serine/threonine protein kinase involved in various aspects of cellular regulation. The regulatory beta-subunit of CK2 exerts a central role not only in mediating formation of tetrameric CK2 complexes but also as a docking partner for several protein kinases. In this study......, CK2beta is found to interact with the human cell cycle checkpoint kinase Chk1. The Chk1-interacting region of CK2beta is localized at the C-terminus and the complex between CK2beta and Chk1 is devoid of the catalytic CK2alpha-subunit. The interaction between CK2beta and Chk1 leads to an increase in...... the Cdc25C phosphorylation activity of Chk1. The screening of several cell lines has revealed that the association between CK2beta and Chk1 also occurs in vivo at a different degree. Collectively, these studies confirm the implication of the regulatory beta-subunit of protein kinase CK2 in cell cycle...

  8. THE STRUCTURE AND PRECISE MODERATE DEVIATIONS OF RANDOM VARIABLES WITH DOMINATEDLY VARYING TAILS

    Institute of Scientific and Technical Information of China (English)

    WANG Yuebao; YANG Yang

    2005-01-01

    This paper shows the structure of the random variables with dominatedly varying tails and that of the associated random variables,and obtains some results on these r.v.s' precise moderate deviations with random centralizing constants,which extend the boundary γλ(t) of large deviations to γ(λ(t))1/s,where γ>0,1<s<2,λ(t) is the expectation of the random index N(t),t>O.

  9. Mutational analysis of residues implicated in the interaction between protein kinase CK2 and peptide substrates

    DEFF Research Database (Denmark)

    Sarno, S; Vaglio, P; Marin, O;

    1997-01-01

    Sixteen derivatives of the optimal peptide substrate RRRA-DDSDDDDD in which aspartic acids were singly or multiply substituted by alanine have been assayed for their phosphorylation efficiency by either wild type protein kinase CK2 or CK2 alpha mutants defective in substrate recognition. With wild...... substitutions tend to have a more than additive effect even if they affect individually dispensable aspartic acids; thus, double, triple, and quintuple substitutions at positions n - 2 and -1, and n + 2, +4, and +5 had detrimental consequences comparable to those observed with substitutions at n + 1 and n + 3....... However, if the suboptimal substrate RRRA-AASDDDDD was used, the single mutants K49A, K71A, K77A, R80A, and H160A also exhibited Km values significantly higher than those of wild type CK2. Kinetic analysis with singly substituted derivatives of peptide RRRA-DDSDDDDD revealed that K49 is implicated in the...

  10. Identification of ellagic acid as potent inhibitor of protein kinase CK2: a successful example of a virtual screening application.

    Science.gov (United States)

    Cozza, Giorgio; Bonvini, Paolo; Zorzi, Elisa; Poletto, Giorgia; Pagano, Mario A; Sarno, Stefania; Donella-Deana, Arianna; Zagotto, Giuseppe; Rosolen, Angelo; Pinna, Lorenzo A; Meggio, Flavio; Moro, Stefano

    2006-04-20

    Casein kinase 2 (CK2) is a ubiquitous, essential, and highly pleiotropic protein kinase whose abnormally high constitutive activity is suspected to underlie its pathogenic potential in neoplasia and other diseases. Using a virtual screening approach, we have identified the ellagic acid, a naturally occurring tannic acid derivative, as a novel potent CK2 inhibitor. At present, ellagic acid represents the most potent known CK2 inhibitor (K(i) = 20 nM). PMID:16610779

  11. Regulation of taurine transport systems by protein kinase CK2 in mammalian cells

    DEFF Research Database (Denmark)

    Lambert, Ian Henry; Hansen, Daniel Bloch

    2011-01-01

    Maintaining cell volume is critical for cellular function yet shift in cell volume is a prerequisite for mitosis and apoptosis. The ubiquitously and evolutionary conserved serine/threonine kinase CK2 promotes cell survival and suppresses apoptosis. The present review describes how mammalian cells...

  12. Protein kinase CK2 and its role in cellular proliferation, development and pathology

    DEFF Research Database (Denmark)

    Guerra, B; Issinger, O G

    1999-01-01

    Protein kinase CK2 is a pleiotropic, ubiquitous and constitutively active protein kinase that can use both ATP and GTP as phosphoryl donors with specificity for serine/threonine residues in the vicinity of acidic amino acids. Recent results show that the enzyme is involved in transcription, signa...

  13. Crystallization and preliminary characterization of crystals of human protein kinase CK2

    DEFF Research Database (Denmark)

    Niefind, K; Guerra, B; Ermakowa, I;

    2000-01-01

    The heterotetrameric recombinant holoenzyme of human protein kinase CK2 was purified to homogeneity. It degraded spontaneously to a stable and fully active state in which the catalytic subunit was about 5 kDa smaller than the wild type. The degraded enzyme was crystallized using polyethylene glycol...

  14. Mapping the residues of protein kinase CK2 alpha subunit responsible for responsiveness to polyanionic inhibitors

    DEFF Research Database (Denmark)

    Vaglio, P; Sarno, S; Marin, O;

    1996-01-01

    The quadruple mutation of the whole basic cluster, K74KKK77 conserved in the catalytic subunits of protein kinase CK2 and implicated in substrate recognition, not only abolishes inhibition by heparin but even induces with some peptide substrates an up to 5-fold stimulation by heparin in the 0...

  15. Mapping the residues of protein kinase CK2 implicated in substrate recognition

    DEFF Research Database (Denmark)

    Sarno, S; Boldyreff, B; Marin, O;

    1995-01-01

    Six mutants of protein kinase CK2 alpha subunit in which basic residues have been mutated into alanines were assayed for their capability to phosphorylate the peptide RRRADDSDDDDD. Two mutants (R228A and R278K279R280A) behaved more or less as alpha wild type and one (H160,166A) was nearly inactive...

  16. Regulation of DNA Methylation Patterns by CK2-Mediated Phosphorylation of Dnmt3a

    Directory of Open Access Journals (Sweden)

    Rachel Deplus

    2014-08-01

    Full Text Available DNA methylation is a central epigenetic modification that is established by de novo DNA methyltransferases. The mechanisms underlying the generation of genomic methylation patterns are still poorly understood. Using mass spectrometry and a phosphospecific Dnmt3a antibody, we demonstrate that CK2 phosphorylates endogenous Dnmt3a at two key residues located near its PWWP domain, thereby downregulating the ability of Dnmt3a to methylate DNA. Genome-wide DNA methylation analysis shows that CK2 primarily modulates CpG methylation of several repeats, most notably of Alu SINEs. This modulation can be directly attributed to CK2-mediated phosphorylation of Dnmt3a. We also find that CK2-mediated phosphorylation is required for localization of Dnmt3a to heterochromatin. By revealing phosphorylation as a mode of regulation of de novo DNA methyltransferase function and by uncovering a mechanism for the regulation of methylation at repetitive elements, our results shed light on the origin of DNA methylation patterns.

  17. Identification of hematein as a novel inhibitor of protein kinase CK2 from a natural product library

    International Nuclear Information System (INIS)

    Casein kinase 2 (CK2) is dysregulated in various human cancers and is a promising target for cancer therapy. To date, there is no small molecular CK2 inhibitor in clinical trial yet. With the aim to identify novel CK2 inhibitors, we screened a natural product library. We adopted cell-based proliferation and CK2 kinase assays to screen CK2 inhibitors from a natural compound library. Dose-dependent response of CK2 inhibitors in vitro was determined by a radioisotope kinase assay. Western blot analysis was used to evaluate down stream Akt phosphorylation and apoptosis. Apoptosis was also evaluated by annexin-V/propidium iodide (PI) labeling method using flow cytometry. Inhibition effects of CK2 inhibitors on the growth of cancer and normal cells were evaluated by cell proliferation and viability assays. Hematein was identified as a novel CK2 inhibitor that is highly selective among a panel of kinases. It appears to be an ATP non-competitive and partially reversible CK2 inhibitor with an IC50 value of 0.55 μM. In addition, hematein inhibited cancer cell growth partially through down-regulation of Akt phosphorylation and induced apoptosis in these cells. Furthermore, hematein exerted stronger inhibition effects on the growth of cancer cells than in normal cells. In this study, we showed that hematein is a novel selective and cell permeable small molecule CK2 inhibitor. Hematein showed stronger growth inhibition effects to cancer cells when compared to normal cells. This compound may represent a promising class of CK2 inhibitors

  18. Downregulation of protein kinase CK2 activity facilitates tumor necrosis factor-α-mediated chondrocyte death through apoptosis and autophagy.

    Directory of Open Access Journals (Sweden)

    Sung Won Lee

    Full Text Available Despite the numerous studies of protein kinase CK2, little progress has been made in understanding its function in chondrocyte death. Our previous study first demonstrated that CK2 is involved in apoptosis of rat articular chondrocytes. Recent studies have suggested that CK2 downregulation is associated with aging. Thus examining the involvement of CK2 downregulation in chondrocyte death is an urgently required task. We undertook this study to examine whether CK2 downregulation modulates chondrocyte death. We first measured CK2 activity in articular chondrocytes of 6-, 21- and 30-month-old rats. Noticeably, CK2 activity was downregulated in chondrocytes with advancing age. To build an in vitro experimental system for simulating tumor necrosis factor (TNF-α-induced cell death in aged chondrocytes with decreased CK2 activity, chondrocytes were co-treated with CK2 inhibitors and TNF-α. Viability assay demonstrated that CK2 inhibitors facilitated TNF-α-mediated chondrocyte death. Pulsed-field gel electrophoresis, nuclear staining, flow cytometry, TUNEL staining, confocal microscopy, western blot and transmission electron microscopy were conducted to assess cell death modes. The results of multiple assays showed that this cell death was mediated by apoptosis. Importantly, autophagy was also involved in this process, as supported by the appearance of a punctuate LC3 pattern and autophagic vacuoles. The inhibition of autophagy by silencing of autophage-related genes 5 and 7 as well as by 3-methyladenine treatment protected chondrocytes against cell death and caspase activation, indicating that autophagy led to the induction of apoptosis. Autophagic cells were observed in cartilage obtained from osteoarthritis (OA model rats and human OA patients. Our findings indicate that CK2 down regulation facilitates TNF-α-mediated chondrocyte death through apoptosis and autophagy. It should be clarified in the future if autophagy observed is a consequence

  19. Stress-induced activation of protein kinase CK2 by direct interaction with p38 mitogen-activated protein kinase

    DEFF Research Database (Denmark)

    Sayed, M; Kim, S O; Salh, B S;

    2000-01-01

    Protein kinase CK2 has been implicated in the regulation of a wide range of proteins that are important in cell proliferation and differentiation. Here we demonstrate that the stress signaling agents anisomycin, arsenite, and tumor necrosis factor-alpha stimulate the specific enzyme activity of CK2...

  20. Right Cortical and Axonal Structures Eliciting Ocular Deviation During Electrical Stimulation Mapping in Awake Patients.

    Science.gov (United States)

    Montemurro, Nicola; Herbet, Guillaume; Duffau, Hugues

    2016-07-01

    To investigate the neural network underpinning eye movements, a cortical and subcortical intraoperative mapping using direct electrical stimulation (DES) was achieved in six awake patients during surgery for a right frontal low-grade glioma. We assessed the relationship between the occurrence of ocular deviation during both cortical and axonal DES and the anatomic location for each response. The corresponding stimulation sites were reported on a standard brain template for visual analysis and between-subjects comparisons. Our results showed that DES of the cortical frontal eye field (FEF) elicited horizontal (anterior FEF) or upward (posterior FEF) eye movements in 3 patients, supporting the fact that FEF comprises several distinct functional subregions. In addition, subcortical stimulation of the white matter tracts underneath the FEF evoked conjugate contraversive ocular deviation in 3 other patients. Interestingly, this region seems to be a crossroad between the fronto-striatal tract, the frontal aslant tract, the inferior fronto-occipital fascicle and the superior longitudinal fascicle. No deficits in eye movements were observed following surgery. To our knowledge, this is the first study reporting ocular deviation during axonal electrostimulation mapping of the white matter fibers in awake patients. Therefore, our original data issued from DES give new insights into the cortical and subcortical structures involved in the control of eye movements and their strong relationships with other functional pathways. PMID:27067598

  1. Text localization using standard deviation analysis of structure elements and support vector machines

    Directory of Open Access Journals (Sweden)

    Zagoris Konstantinos

    2011-01-01

    Full Text Available Abstract A text localization technique is required to successfully exploit document images such as technical articles and letters. The proposed method detects and extracts text areas from document images. Initially a connected components analysis technique detects blocks of foreground objects. Then, a descriptor that consists of a set of suitable document structure elements is extracted from the blocks. This is achieved by incorporating an algorithm called Standard Deviation Analysis of Structure Elements (SDASE which maximizes the separability between the blocks. Another feature of the SDASE is that its length adapts according to the requirements of the application. Finally, the descriptor of each block is used as input to a trained support vector machines that classify the block as text or not. The proposed technique is also capable of adjusting to the text structure of the documents. Experimental results on benchmarking databases demonstrate the effectiveness of the proposed method.

  2. Isolation and characterization of a monoclonal anti-protein kinase CK2 beta-subunit antibody of the IgG class for the direct detection of CK2 beta-subunit in tissue cultures of various mammalian species and human tumors

    DEFF Research Database (Denmark)

    Nastainczyk, W; Schmidt-Spaniol, I; Boldyreff, B;

    1995-01-01

    A murine monoclonal anti-protein kinase CK2 beta antibody was isolated and characterized. The antibody detects 1 pmol of purified recombinant CK2 beta-subunit after analysis on SDS-PAGE. Alternatively undenatured CK2 beta-subunit was detected by an ELISA assay either as recombinant CK2 beta-subun...

  3. CRY Drives Cyclic CK2-Mediated BMAL1 Phosphorylation to Control the Mammalian Circadian Clock

    OpenAIRE

    Tamaru, Teruya; Hattori, Mitsuru; Honda, Kousuke; Nakahata, Yasukazu; Sassone-Corsi, Paolo; van der Horst, Gijsbertus T. J.; Ozawa, Takeaki; Takamatsu, Ken

    2015-01-01

    Intracellular circadian clocks, composed of clock genes that act in transcription-translation feedback loops, drive global rhythmic expression of the mammalian transcriptome and allow an organism to anticipate to the momentum of the day. Using a novel clock-perturbing peptide, we established a pivotal role for casein kinase (CK)-2-mediated circadian BMAL1-Ser90 phosphorylation (BMAL1-P) in regulating central and peripheral core clocks. Subsequent analysis of the underlying mechanism showed a ...

  4. Phosphorylation by CK2 and MAPK enhances calnexin association with ribosomes.

    Science.gov (United States)

    Chevet, E; Wong, H N; Gerber, D; Cochet, C; Fazel, A; Cameron, P H; Gushue, J N; Thomas, D Y; Bergeron, J J

    1999-07-01

    Calnexin was initially identified as an endoplasmic reticulum (ER) type I integral membrane protein, phosphorylated on its cytosolic domain by ER-associated protein kinases. Although the role of the ER luminal domain of calnexin has been established as a constituent of the molecular chaperone machinery of the ER, less is known about the role of the cytosolic phosphorylation of calnexin. Analysis by two-dimensional phosphopeptide maps revealed that calnexin was in vitro phosphorylated in isolated microsomes by casein kinase 2 (CK2) and extracellular-signal regulated kinase-1 (ERK-1) at sites corresponding to those for in vivo phosphorylation. In canine pancreatic microsomes, synergistic phosphorylation by CK2 and ERK-1 led to increased association of calnexin with membrane-bound ribosomes. In vivo, calnexin-associated ERK-1 activity was identified by co-immunoprecipitation. This activity was abolished in cells expressing a dominant-negative MEK-1. Activation of ERK-1 in cells by addition of serum led to a 4-fold increase in ribosome-associated calnexin over unstimulated cells. Taken together with studies revealing calnexin association with CK2 and ERK-1, a model is proposed whereby phosphorylation of calnexin leads to a potential increase in glycoprotein folding close to the translocon. PMID:10393181

  5. Thermodynamic parameters for binding of some halogenated inhibitors of human protein kinase CK2

    International Nuclear Information System (INIS)

    Highlights: • Two new compounds being potential human CK2a inhibitors are studied. • Their IC50 values were determined in vitro. • The heats of binding and kbind were estimated using DSC. • The increased stability of protein–ligand complexes was followed by fluorescence. • Methylated TBBt derivative (MeBr3Br) is almost as active as TBBt. - Abstract: The interaction of human CK2α with a series of tetrabromobenzotriazole (TBBt) and tetrabromobenzimidazole (TBBz) analogs, in which one of the bromine atoms proximal to the triazole/imidazole ring is replaced by a methyl group, was studied by biochemical (IC50) and biophysical methods (thermal stability of protein–ligand complex monitored by DSC and fluorescence). Two newly synthesized tri-bromo derivatives display inhibitory activity comparable to that of the reference compounds, TBBt and TBBz, respectively. DSC analysis of the stability of protein–ligand complexes shows that the heat of ligand binding (Hbind) is driven by intermolecular electrostatic interactions involving the triazole/imidazole ring, as indicated by a strong correlation between Hbind and ligand pKa. Screening, based on fluorescence-monitored thermal unfolding of protein–ligand complexes, gave comparable results, clearly identifying ligands that most strongly bind to the protein. Overall results, additionally supported by molecular modeling, confirm that a balance of hydrophobic and electrostatic interactions contribute predominantly, relative to possible intermolecular halogen bonding, in binding of the ligands to the CK2α ATP-binding site

  6. Potent and Selective CK2 Kinase Inhibitors with Effects on Wnt Pathway Signaling in Vivo.

    Science.gov (United States)

    Dowling, James E; Alimzhanov, Marat; Bao, Larry; Chuaqui, Claudio; Denz, Christopher R; Jenkins, Emma; Larsen, Nicholas A; Lyne, Paul D; Pontz, Timothy; Ye, Qing; Holdgate, Geoff A; Snow, Lindsay; O'Connell, Nichole; Ferguson, Andrew D

    2016-03-10

    The Wnt pathway is an evolutionarily conserved and tightly regulated signaling network with important roles in embryonic development and adult tissue regeneration. Impaired Wnt pathway regulation, arising from mutations in Wnt signaling components, such as Axin, APC, and β-catenin, results in uncontrolled cell growth and triggers oncogenesis. To explore the reported link between CK2 kinase activity and Wnt pathway signaling, we sought to identify a potent, selective inhibitor of CK2 suitable for proof of concept studies in vivo. Starting from a pyrazolo[1,5-a]pyrimidine lead (2), we identified compound 7h, a potent CK2 inhibitor with picomolar affinity that is highly selectivity against other kinase family enzymes and inhibits Wnt pathway signaling (IC50 = 50 nM) in DLD-1 cells. In addition, compound 7h has physicochemical properties that are suitable for formulation as an intravenous solution, has demonstrated good pharmacokinetics in preclinical species, and exhibits a high level of activity as a monotherapy in HCT-116 and SW-620 xenografts. PMID:26985319

  7. CK2(beta)tes gene encodes a testis-specific isoform of the regulatory subunit of casein kinase 2 in Drosophila melanogaster

    DEFF Research Database (Denmark)

    Kalmykova, Alla I; Shevelyov, Yuri Y; Polesskaya, Oksana O; Dobritsa, Anna A; Evstafieva, Alexandra G; Boldyreff, Brigitte; Issinger, Olaf-Georg; Gvozdev, Vladimir A

    2002-01-01

    An earlier described CK2(beta)tes gene of Drosophila melanogaster is shown to encode a male germline specific isoform of regulatory beta subunit of casein kinase 2. Western-analysis using anti-CK2(beta)tes Ig revealed CK2(beta)tes protein in Drosophila testes extract. Expression of a CK2(beta)tes-beta......-galactosidase fusion protein driven by the CK2(beta)tes promoter was found in transgenic flies at postmitotic stages of spermatogenesis. Examination of biochemical characteristics of a recombinant CK2(beta)tes protein expressed in Escherichia coli revealed properties similar to those of CK2beta: (a) CK2(beta......)tes protein stimulates CK2alpha catalytic activity toward synthetic peptide; (b) it inhibits phosphorylation of calmodulin and mediates stimulation of CK2alpha by polylysine; (c) it is able to form (CK2(beta)tes)2 dimers, as well as (CK2alpha)2(CK2(beta)tes)2 tetramers. Using the yeast two-hybrid system and...

  8. Protein Kinase CK2 Expression Predicts Relapse Survival in ERα Dependent Breast Cancer, and Modulates ERα Expression in Vitro

    Directory of Open Access Journals (Sweden)

    Marlon D. Williams

    2015-12-01

    Full Text Available The heterotetrameric protein kinase CK2 has been associated with oncogenic transformation, and our previous studies have shown that it may affect estrogenic signaling. Here, we investigate the role of the protein kinase CK2 in regulating ERα (estrogen receptor α signaling in breast cancer. We determined the correlation of CK2α expression with relapse free breast cancer patient survival utilizing Kaplan Meier Plotter (kmplot.com/analysis/ to mine breast cancer microarrays repositories. Patients were stratified according to ERα status, histological grade, and hormonal therapy. Luciferase reporter assays and flow cytometry were implemented to determine the impact of CK2 inhibition on ERE-mediated gene expression and expression of ERα protein. CK2α expression is associated with shorter relapse free survival among ERα (+ patients with grade 1 or 2 tumors, as well as among those patients receiving hormonal therapy. Biochemical inhibition of CK2 activity results in increased ER-transactivation as well as increased expression among ERα (+ and ERα (− breast cancer cell lines. These findings suggest that CK2 may contribute to estrogen-independent cell proliferation and breast tumor progression, and may potentially serve as a biomarker and pharmacological target in breast cancer.

  9. Quantitative analysis of a phosphoproteome readily altered by the protein kinase CK2 inhibitor quinalizarin in HEK-293T cells.

    Science.gov (United States)

    Franchin, Cinzia; Cesaro, Luca; Salvi, Mauro; Millioni, Renato; Iori, Elisabetta; Cifani, Paolo; James, Peter; Arrigoni, Giorgio; Pinna, Lorenzo

    2015-06-01

    CK2 is an extremely pleiotropic Ser/Thr protein kinase, responsible for the generation of a large proportion of the human phosphoproteome and implicated in a wide variety of biological functions. CK2 plays a global role as an anti-apoptotic agent, a property which is believed to partially account for the addiction of many cancer cells to high CK2 levels. To gain information about the CK2 targets whose phosphorylation is primarily implicated in its pro-survival signaling advantage has been taken of quinalizarin (QZ) a cell permeable fairly specific CK2 inhibitor, previously shown to be able to block endogenous CK2 triggering an apoptotic response. HEK-293T cells either treated or not for 3h with 50μM QZ were exploited to perform a quantitative SILAC phosphoproteomic analysis of phosphosites readily responsive to QZ treatment. Our analysis led to the identification of 4883 phosphosites, belonging to 1693 phosphoproteins. 71 phosphosites (belonging to 47 proteins) underwent a 50% or more decreased occupancy upon QZ treatment. Almost 50% of these fulfilled the typical consensus sequence recognized by CK2 (S/T-x-x-E/D/pS) and in several cases were validated as bona fide substrates of CK2 either based on data in the literature or by performing in vitro phosphorylation experiments with purified proteins. The majority of the remaining phosphosites drastically decreased upon QZ treatment display the pS/T-P motif typical of proline directed protein kinases and a web logo extracted from them differentiates from the web logo extracted from all the proline directed phosphosites quantified during our analysis (1151 altogether). A paradoxical outcome of our study was the detection of 116 phosphosites (belonging to 92 proteins altogether) whose occupancy is substantially increased (50% or more), rather than decreased by QZ treatment: 40% of these display the typical motif recognized by proline directed kinases, while about 25% fulfill the CK2 consensus. Collectively taken our

  10. Protein Kinase CK2 Regulates Cytoskeletal Reorganization during Ionizing Radiation-Induced Senescence of Human Mesenchymal Stem Cells

    Energy Technology Data Exchange (ETDEWEB)

    Wang, Daojing; Jang, Deok-Jin

    2009-08-21

    Human mesenchymal stem cells (hMSC) are critical for tissue regeneration. How hMSC respond to genotoxic stresses and potentially contribute to aging and cancer remain underexplored. We demonstrated that ionizing radiation induced cellular senescence of hMSC over a period of 10 days, showing a critical transition between day 3 and day 6. This was confirmed by senescence-associated beta-galactosidase (SA-{beta}-gal) staining, protein expression profiles of key cell cycle regulators (retinoblastoma (Rb) protein, p53, p21{sup waf1/Cip1}, and p16{sup INK4A}), and senescence-associated secretory phenotypes (SASPs) (IL-8, IL-12, GRO, and MDC). We observed dramatic cytoskeletal reorganization of hMSC through reduction of myosin-10, redistribution of myosin-9, and secretion of profilin-1. Using a SILAC-based phosphoproteomics method, we detected significant reduction of myosin-9 phosphorylation at Ser1943, coinciding with its redistribution. Importantly, through treatment with cell permeable inhibitors (4,5,6,7-tetrabromo-1H-benzotriazole (TBB) and 2-dimethylamino-4,5,6,7-tetrabromo-1H-benzimidazole (DMAT)), and gene knockdown using RNA interference, we identified CK2, a kinase responsible for myosin-9 phosphorylation at Ser1943, as a key factor contributing to the radiation-induced senescence of hMSC. We showed that individual knockdown of CK2 catalytic subunits CK2{alpha} and CK2{alpha}{prime} induced hMSC senescence. However, only knockdown of CK2{alpha} resulted in morphological phenotypes resembling those of radiation-induced senescence. These results suggest that CK2{alpha} and CK2{alpha}{prime} play differential roles in hMSC senescence progression, and their relative expression might represent a novel regulatory mechanism for CK2 activity.

  11. Thermodynamic parameters for binding of some halogenated inhibitors of human protein kinase CK2

    Energy Technology Data Exchange (ETDEWEB)

    Winiewska, Maria; Makowska, Małgorzata [Institute of Biochemistry and Biophysics PAS, Warszawa (Poland); Maj, Piotr [Institute of Biochemistry and Biophysics PAS, Warszawa (Poland); Nencki Institute of Experimental Biology PAS, Warszawa (Poland); Wielechowska, Monika; Bretner, Maria [Warsaw University of Technology, Faculty of Chemistry, Warszawa (Poland); Poznański, Jarosław, E-mail: jarek@ibb.waw.pl [Institute of Biochemistry and Biophysics PAS, Warszawa (Poland); Shugar, David [Institute of Biochemistry and Biophysics PAS, Warszawa (Poland)

    2015-01-02

    Highlights: • Two new compounds being potential human CK2a inhibitors are studied. • Their IC50 values were determined in vitro. • The heats of binding and kbind were estimated using DSC. • The increased stability of protein–ligand complexes was followed by fluorescence. • Methylated TBBt derivative (MeBr3Br) is almost as active as TBBt. - Abstract: The interaction of human CK2α with a series of tetrabromobenzotriazole (TBBt) and tetrabromobenzimidazole (TBBz) analogs, in which one of the bromine atoms proximal to the triazole/imidazole ring is replaced by a methyl group, was studied by biochemical (IC{sub 50}) and biophysical methods (thermal stability of protein–ligand complex monitored by DSC and fluorescence). Two newly synthesized tri-bromo derivatives display inhibitory activity comparable to that of the reference compounds, TBBt and TBBz, respectively. DSC analysis of the stability of protein–ligand complexes shows that the heat of ligand binding (H{sub bind}) is driven by intermolecular electrostatic interactions involving the triazole/imidazole ring, as indicated by a strong correlation between H{sub bind} and ligand pK{sub a}. Screening, based on fluorescence-monitored thermal unfolding of protein–ligand complexes, gave comparable results, clearly identifying ligands that most strongly bind to the protein. Overall results, additionally supported by molecular modeling, confirm that a balance of hydrophobic and electrostatic interactions contribute predominantly, relative to possible intermolecular halogen bonding, in binding of the ligands to the CK2α ATP-binding site.

  12. Effects of the CK2 inhibitors CX-4945 and CX-5011 on drug-resistant cells.

    Directory of Open Access Journals (Sweden)

    Sofia Zanin

    Full Text Available CK2 is a pleiotropic protein kinase, which regulates many survival pathways and plays a global anti-apoptotic function. It is highly expressed in tumor cells, and is presently considered a promising therapeutic target. Among the many inhibitors available for this kinase, the recently developed CX-4945 and CX-5011 have proved to be very potent, selective and effective in inducing cell death in tumor cells; CX-4945 has recently entered clinical trials. However, no data are available on the efficacy of these compounds to overcome drug resistance, a major reasons of cancer therapy failure. Here we address this point, by studying their effects in several tumor cell lines, each available as variant R resistant to drug-induced apoptosis, and normal-sensitive variant S. We found that the inhibition of endogenous CK2 was very similar in S and R treated cells, with more than 50% CK2 activity reduction at sub-micromolar concentrations of CX-4945 and CX-5011. A consequent apoptotic response was induced both in S and R variants of each pairs. Moreover, the combined treatment of CX-4945 plus vinblastine was able to sensitize to vinblastine R cells that are otherwise almost insensitive to this conventional antitumor drug. Consistently, doxorubicin accumulation in multidrug resistant (MDR cells was greatly increased by CX-4945.In summary, we demonstrated that all the R variants are sensitive to CX-4945 and CX-5011; since some of the treated R lines express the extrusion pump Pgp, often responsible of the MDR phenotype, we can also conclude that the two inhibitors can successfully overcome the MDR phenomenon.

  13. Detection of phospho-sites generated by protein kinase CK2 in CFTR: mechanistic aspects of Thr1471 phosphorylation.

    Directory of Open Access Journals (Sweden)

    Andrea Venerando

    Full Text Available By mass spectrometry analysis of mouse Cystic Fibrosis Transmembrane-conductance Regulator (mCFTR expressed in yeast we have detected 21 phosphopeptides accounting for 22 potential phospho-residues, 12 of which could be unambiguously assigned. Most are conserved in human CFTR (hCFTR and the majority cluster in the Regulatory Domain, lying within consensus sequences for PKA, as identified in previous mammalian studies. This validates our yeast expression model. A number of phospho-residues were novel and human conserved, notably mouse Ser670, Ser723, Ser737, and Thr1467, that all lie in acidic sequences, compatible with their phosphorylation by protein kinase CK2. Thr1467 is localized in the C-terminal tail, embedded in a functionally important and very acidic sequence (EETEEE which displays an optimal consensus for protein kinase CK2. Herein, we show that Thr1467, homologous to human Thr1471 is readily phosphorylated by CK2. Indeed a 42 amino acid peptide encompassing the C-terminal segment of human CFTR is readily phosphorylated at Thr1471 with favorable kinetics (Km 1.7 µM by CK2 holoenzyme, but neither by its isolated catalytic subunit nor by other acidophilic Ser/Thr kinases (CK1, PLK2/3, GCK/FAM20C. Our finding that by treating CFTR expressing BHK cells with the very specific CK2 inhibitor CX4945, newly synthesized wild type CFTR (and even more its Phe508del mutant accumulates more abundantly than in the absence of CK2 inhibitor, supports the conclusion that phosphorylation of CFTR by CK2 correlates with decreased stability of the protein.

  14. Inhibition of protein kinase CK2 by condensed polyphenolic derivatives. An in vitro and in vivo study.

    Science.gov (United States)

    Meggio, Flavio; Pagano, Mario A; Moro, Stefano; Zagotto, Giuseppe; Ruzzene, Maria; Sarno, Stefania; Cozza, Giorgio; Bain, Jenny; Elliott, Matthew; Deana, Arianna Donella; Brunati, Anna Maria; Pinna, Lorenzo A

    2004-10-12

    ATP site-directed inhibitors that can target individual kinases are powerful tools for use in signal transduction research, all the more so in the case of a pleiotropic, constitutively active protein kinase such as CK2, which is not turned on in response to specific stimuli. By screening a library of more than 200 derivatives of natural polyphenolic compounds, we have identified 16 molecules which inhibit CK2 with IC(50) values of CK2 within a panel of 33 protein kinases tested. Treatment of Jurkat cells with these compounds promotes inhibition of endogenous CK2 and induction of apoptosis. A correlation is observed between their efficacy as CK2 inhibitors (as judged from IC(50) values) and their capacity to induce cell death (DC(50) values). Mutations of the unique CK2alpha residues Val66 and/or Ile174 to alanine have a detrimental effect on inhibition by these compounds with 16-67-fold increases in IC(50) values. The combined usage of these reagents can be exploited to gain information about cellular functions mediated by CK2. PMID:15461466

  15. Different Persistence of the Cellular Effects Promoted by Protein Kinase CK2 Inhibitors CX-4945 and TDB

    Directory of Open Access Journals (Sweden)

    Cristina Girardi

    2015-01-01

    Full Text Available We compare the cellular efficacy of two selective and cell permeable inhibitors of the antiapoptotic kinase CK2. One inhibitor, CX-4945, is already in clinical trials as antitumor drug, while the other, TDB, has been recently successfully employed to demonstrate the implication of CK2 in cellular (disregulation. We found that, upon treatment of cancer cells with these compounds, the extent of inhibition of endocellular CK2 is initially comparable but becomes significantly different after the inhibitors are removed from the cellular medium: while in CX-4945 treated cells CK2 activity is restored to control level after 24 h, in the case of TDB it is still strongly reduced after 4 days from removal. The biological effects of the two inhibitors have been analyzed by performing clonogenic, spheroid formation, and wound-healing assays: we observed a permanent inhibition of cell survival and migration in TDB-treated cells even after the inhibitor removal, while in the case of CX-4945 only its maintenance for the whole duration of the assay insured a persisting effect. We suggest that the superiority of TDB in maintaining kinase activity inhibited and perpetuating the consequent effects is an added value to be considered when planning new therapies based on CK2 targeting.

  16. The carboxy terminus of p53 mimics the polylysine effect of protein kinase CK2-catalyzed MDM2 phosphorylation

    DEFF Research Database (Denmark)

    Guerra, B; Götz, C; Wagner, P;

    1997-01-01

    with the holoenzyme. Polylysine stimulated MDM2 phosphorylation by CK2 holoenzyme threefold in contrast to the alpha-subunit-catalyzed MDM2 phosphorylation which was reduced by about 66% when polylysine was added. Full length p53, but also a peptide representing a C-terminal fragment of the tumor...... suppressor gene product p53 (amino acids 264-393 which also harbors the CK2beta interaction site at amino acids 287-340) mimicked the polylysine effect in all respects, ie. stimulation of phosphate incorporation by CK2 holoenzyme and inhibition in the presence of the catalytic CK2 alpha-subunit. Stimulation...... by p53(264-393) was on the average close to twofold and inhibition in the case of the alpha-subunit-catalyzed MDM2 phosphorylation was about 40%. Phosphorylation of MDM2 by CK2 holoenzyme in the presence of the p21(WAF1/CIP1), known to be a potent inhibitor of cyclin-dependent protein kinases, also...

  17. Tetrabromocinnamic acid (TBCA) and related compounds represent a new class of specific protein kinase CK2 inhibitors.

    Science.gov (United States)

    Pagano, Mario A; Poletto, Giorgia; Di Maira, Giovanni; Cozza, Giorgio; Ruzzene, Maria; Sarno, Stefania; Bain, Jenny; Elliott, Matthew; Moro, Stefano; Zagotto, Giuseppe; Meggio, Flavio; Pinna, Lorenzo A

    2007-01-01

    Abnormally high constitutive activity of protein kinase CK2, levels of which are elevated in a variety of tumours, is suspected to underlie its pathogenic potential. The most widely employed CK2 inhibitor is 4,5,6,7-tetrabromobenzotriazole (TBB), which exhibits a comparable efficacy toward another kinase, DYRK1 a. Here we describe the development of a new class of CK2 inhibitors, conceptually derived from TBB, which have lost their potency toward DYRK1 a. In particular, tetrabromocinnamic acid (TBCA) inhibits CK2 five times more efficiently than TBB (IC50 values 0.11 and 0.56 microM, respectively), without having any comparable effect on DYRK1 a (IC50 24.5 microM) or on a panel of 28 protein kinases. The usefulness of TBCA for cellular studies has been validated by showing that it reduces the viability of Jurkat cells more efficiently than TBB through enhancement of apoptosis. Collectively taken, the reported data support the view that suitably derivatized tetrabromobenzene molecules may provide powerful reagents for dissecting the cellular functions of CK2 and counteracting its pathogenic potentials. PMID:17133643

  18. The Rice CK2 Kinase Regulates Trafficking of Phosphate Transporters in Response to Phosphate Levels[OPEN

    Science.gov (United States)

    Chen, Jieyu; Wang, Yifeng; Wang, Fei; Yang, Jian; Gao, Mingxing; Li, Changying; Liu, Yingyao; Liu, Yu; Yamaji, Naoki; Ma, Jian Feng; Paz-Ares, Javier; Nussaume, Laurent; Zhang, Shuqun; Yi, Keke; Wu, Zhongchang; Wu, Ping

    2015-01-01

    Phosphate transporters (PTs) mediate phosphorus uptake and are regulated at the transcriptional and posttranslational levels. In one key mechanism of posttranslational regulation, phosphorylation of PTs affects their trafficking from the endoplasmic reticulum (ER) to the plasma membrane. However, the kinase(s) mediating PT phosphorylation and the mechanism leading to ER retention of phosphorylated PTs remain unclear. In this study, we identified a rice (Oryza sativa) kinase subunit, CK2β3, which interacts with PT2 and PT8 in a yeast two-hybrid screen. Also, the CK2α3/β3 holoenzyme phosphorylates PT8 under phosphate-sufficient conditions. This phosphorylation inhibited the interaction of PT8 with PHOSPHATE TRANSPORTER TRAFFIC FACILITATOR1, a key cofactor regulating the exit of PTs from the ER to the plasma membrane. Additionally, phosphorus starvation promoted CK2β3 degradation, relieving the negative regulation of PT phosphorus-insufficient conditions. In accordance, transgenic expression of a nonphosphorylatable version of OsPT8 resulted in elevated levels of that protein at the plasma membrane and enhanced phosphorus accumulation and plant growth under various phosphorus regimes. Taken together, these results indicate that CK2α3/β3 negatively regulates PTs and phosphorus status regulates CK2α3/β3. PMID:25724641

  19. Ability of CK2beta to selectively regulate cellular protein kinases

    DEFF Research Database (Denmark)

    Olsen, Birgitte; Guerra, Barbara

    2008-01-01

    The Wee1 protein kinase plays a prominent role in keeping cyclin dependent kinase 1 (CDK1) inactive during the G2 phase of the cell cycle. At the onset of mitosis, Wee1 is ubiquitinated by the E3 ubiquitin ligase SCF(beta-TrCP) and subsequently degraded by the proteasome machinery. Previously, it...... additional phosphodegrons recognised by beta-TrCP. These events contribute to destabilise Wee1 at the onset of mitosis (Watanabe et al. Proc Natl Acad Sci USA 101:4419-4424, 2004). We show here that in addition to the ability of CK2 to phosphorylate Wee1 as reported earlier, the regulatory beta-subunit of...

  20. Identification of a Dual Inhibitor of SRPK1 and CK2 That Attenuates Pathological Angiogenesis of Macular Degeneration in Mice.

    Science.gov (United States)

    Morooka, Satoshi; Hoshina, Mitsuteru; Kii, Isao; Okabe, Takayoshi; Kojima, Hirotatsu; Inoue, Naoko; Okuno, Yukiko; Denawa, Masatsugu; Yoshida, Suguru; Fukuhara, Junichi; Ninomiya, Kensuke; Ikura, Teikichi; Furuya, Toshio; Nagano, Tetsuo; Noda, Kousuke; Ishida, Susumu; Hosoya, Takamitsu; Ito, Nobutoshi; Yoshimura, Nagahisa; Hagiwara, Masatoshi

    2015-08-01

    Excessive angiogenesis contributes to numerous diseases, including cancer and blinding retinopathy. Antibodies against vascular endothelial growth factor (VEGF) have been approved and are widely used in clinical treatment. Our previous studies using SRPIN340, a small molecule inhibitor of SRPK1 (serine-arginine protein kinase 1), demonstrated that SRPK1 is a potential target for the development of antiangiogenic drugs. In this study, we solved the structure of SRPK1 bound to SRPIN340 by X-ray crystallography. Using pharmacophore docking models followed by in vitro kinase assays, we screened a large-scale chemical library, and thus identified a new inhibitor of SRPK1. This inhibitor, SRPIN803, prevented VEGF production more effectively than SRPIN340 owing to the dual inhibition of SRPK1 and CK2 (casein kinase 2). In a mouse model of age-related macular degeneration, topical administration of eye ointment containing SRPIN803 significantly inhibited choroidal neovascularization, suggesting a clinical potential of SRPIN803 as a topical ointment for ocular neovascularization. Thus SRPIN803 merits further investigation as a novel inhibitor of VEGF. PMID:25993998

  1. Protein kinase CK2 localizes to sites of DNA double-strand break regulating the cellular response to DNA damage

    Directory of Open Access Journals (Sweden)

    Olsen Birgitte B

    2012-03-01

    Full Text Available Abstract Background The DNA-dependent protein kinase (DNA-PK is a nuclear complex composed of a large catalytic subunit (DNA-PKcs and a heterodimeric DNA-targeting subunit Ku. DNA-PK is a major component of the non-homologous end-joining (NHEJ repair mechanism, which is activated in the presence of DNA double-strand breaks induced by ionizing radiation, reactive oxygen species and radiomimetic drugs. We have recently reported that down-regulation of protein kinase CK2 by siRNA interference results in enhanced cell death specifically in DNA-PKcs-proficient human glioblastoma cells, and this event is accompanied by decreased autophosphorylation of DNA-PKcs at S2056 and delayed repair of DNA double-strand breaks. Results In the present study, we show that CK2 co-localizes with phosphorylated histone H2AX to sites of DNA damage and while CK2 gene knockdown is associated with delayed DNA damage repair, its overexpression accelerates this process. We report for the first time evidence that lack of CK2 destabilizes the interaction of DNA-PKcs with DNA and with Ku80 at sites of genetic lesions. Furthermore, we show that CK2 regulates the phosphorylation levels of DNA-PKcs only in response to direct induction of DNA double-strand breaks. Conclusions Taken together, these results strongly indicate that CK2 plays a prominent role in NHEJ by facilitating and/or stabilizing the binding of DNA-PKcs and, possibly other repair proteins, to the DNA ends contributing to efficient DNA damage repair in mammalian cells.

  2. Disruption of the regulatory beta subunit of protein kinase CK2 in mice leads to a cell-autonomous defect and early embryonic lethality

    DEFF Research Database (Denmark)

    Buchou, Thierry; Vernet, Muriel; Blond, Olivier; Jensen, Hans H; Pointu, Hervé; Olsen, Birgitte B; Cochet, Claude; Issinger, Olaf-Georg; Boldyreff, Brigitte

    2003-01-01

    Protein kinase CK2 is a ubiquitous protein kinase implicated in proliferation and cell survival. Its regulatory beta subunit, CK2beta, which is encoded by a single gene in mammals, has been suspected of regulating other protein kinases. In this work, we show that knockout of the CK2beta gene in...... mice leads to postimplantation lethality. Mutant embryos were reduced in size at embryonic day 6.5 (E6.5). They did not exhibit signs of apoptosis but did show reduced cell proliferation. Mutant embryos were resorbed at E7.5. In vitro, CK2beta(-/-) morula development stopped after the blastocyst stage....... Attempts to generate homozygous embryonic stem (ES) cells failed. By using a conditional knockout approach, we show that lack of CK2beta is deleterious for mouse ES cells and primary embryonic fibroblasts. This is in contrast to what occurs with yeast cells, which can survive without functional CK2beta...

  3. The functional interplay between protein kinase CK2 and CCA1 transcriptional activity is essential for clock temperature compensation in Arabidopsis.

    Directory of Open Access Journals (Sweden)

    Sergi Portolés

    2010-11-01

    Full Text Available Circadian rhythms are daily biological oscillations driven by an endogenous mechanism known as circadian clock. The protein kinase CK2 is one of the few clock components that is evolutionary conserved among different taxonomic groups. CK2 regulates the stability and nuclear localization of essential clock proteins in mammals, fungi, and insects. Two CK2 regulatory subunits, CKB3 and CKB4, have been also linked with the Arabidopsis thaliana circadian system. However, the biological relevance and the precise mechanisms of CK2 function within the plant clockwork are not known. By using ChIP and Double-ChIP experiments together with in vivo luminescence assays at different temperatures, we were able to identify a temperature-dependent function for CK2 modulating circadian period length. Our study uncovers a previously unpredicted mechanism for CK2 antagonizing the key clock regulator CIRCADIAN CLOCK-ASSOCIATED 1 (CCA1. CK2 activity does not alter protein accumulation or subcellular localization but interferes with CCA1 binding affinity to the promoters of the oscillator genes. High temperatures enhance the CCA1 binding activity, which is precisely counterbalanced by the CK2 opposing function. Altering this balance by over-expression, mutation, or pharmacological inhibition affects the temperature compensation profile, providing a mechanism by which plants regulate circadian period at changing temperatures. Therefore, our study establishes a new model demonstrating that two opposing and temperature-dependent activities (CCA1-CK2 are essential for clock temperature compensation in Arabidopsis.

  4. An in vitro ES cell-based clock recapitulation assay model identifies CK2α as an endogenous clock regulator.

    Science.gov (United States)

    Umemura, Yasuhiro; Yoshida, Junko; Wada, Masashi; Tsuchiya, Yoshiki; Minami, Yoichi; Watanabe, Hitomi; Kondoh, Gen; Takeda, Junji; Inokawa, Hitoshi; Horie, Kyoji; Yagita, Kazuhiro

    2013-01-01

    We previously reported emergence and disappearance of circadian molecular oscillations during differentiation of mouse embryonic stem (ES) cells and reprogramming of differentiated cells, respectively. Here we present a robust and stringent in vitro circadian clock formation assay that recapitulates in vivo circadian phenotypes. This assay system first confirmed that a mutant ES cell line lacking Casein Kinase I delta (CKIδ) induced ∼3 hours longer period-length of circadian rhythm than the wild type, which was compatible with recently reported results using CKIδ null mice. In addition, this assay system also revealed that a Casein Kinase 2 alpha subunit (CK2α) homozygous mutant ES cell line developed significantly longer (about 2.5 hours) periods of circadian clock oscillations after in vitro or in vivo differentiation. Moreover, revertant ES cell lines in which mutagenic vector sequences were deleted showed nearly wild type periods after differentiation, indicating that the abnormal circadian period of the mutant ES cell line originated from the mutation in the CK2α gene. Since CK2α deficient mice are embryonic lethal, this in vitro assay system represents the genetic evidence showing an essential role of CK2α in the mammalian circadian clock. This assay was successfully applied for the phenotype analysis of homozygous mutant ES cells, demonstrating that an ES cell-based in vitro assay is available for circadian genetic screening. PMID:23840637

  5. Isolation and characterization of a monoclonal anti CK-2 alpha subunit antibody of the IgG1 subclass

    DEFF Research Database (Denmark)

    Schmidt-Spaniol, I; Boldyreff, B; Issinger, O G

    1992-01-01

    A monoclonal antibody was produced against the recombinant human alpha subunit of CK-2. The antibody was of the IgG1 subclass and it was isolated from serum-free cell culture media and purified by affinity chromatography on Protein G Sepharose. The antibody can be used to detect specifically the ...

  6. CK2 Phosphorylates and Inhibits TAp73 Tumor Suppressor Function to Promote Expression of Cancer Stem Cell Genes and Phenotype in Head and Neck Cancer

    Directory of Open Access Journals (Sweden)

    Hai Lu

    2014-10-01

    Full Text Available Cancer stem cells (CSC and genes have been linked to cancer development and therapeutic resistance, but the signaling mechanisms regulating CSC genes and phenotype are incompletely understood. CK2 has emerged as a key signal serine/threonine kinase that modulates diverse signal cascades regulating cell fate and growth. We previously showed that CK2 is often aberrantly expressed and activated in head and neck squamous cell carcinomas (HNSCC, concomitantly with mutant (mt tumor suppressor TP53, and inactivation of its family member, TAp73. Unexpectedly, we observed that classical stem cell genes Nanog, Sox2, and Oct4, are overexpressed in HNSCC with inactivated TAp73 and mtTP53. However, the potential relationship between CK2, TAp73 inactivation, and CSC phenotype is unknown. We reveal that inhibition of CK2 by pharmacologic inhibitors or siRNA inhibits the expression of CSC genes and side population (SP, while enhancing TAp73 mRNA and protein expression. Conversely, CK2 inhibitor attenuation of CSC protein expression and the SP by was abrogated by TAp73 siRNA. Bioinformatic analysis uncovered a single predicted CK2 threonine phosphorylation site (T27 within the N-terminal transactivation domain of TAp73. Nuclear CK2 and TAp73 interaction, confirmed by co-immunoprecipitation, was attenuated by CK2 inhibitor, or a T27A point-mutation of this predicted CK2 threonine phospho-acceptor site of TAp73. Further, T27A mutation attenuated phosphorylation, while enhancing TAp73 function in repressing CSC gene expression and SP cells. A new CK2 inhibitor, CX-4945, inhibited CSC related SP cells, clonogenic survival, and spheroid formation. Our study unveils a novel regulatory mechanism whereby aberrant CK2 signaling inhibits TAp73 to promote the expression of CSC genes and phenotype.

  7. Standard deviations

    CERN Document Server

    Smith, Gary

    2015-01-01

    Did you know that having a messy room will make you racist? Or that human beings possess the ability to postpone death until after important ceremonial occasions? Or that people live three to five years longer if they have positive initials, like ACE? All of these ‘facts' have been argued with a straight face by researchers and backed up with reams of data and convincing statistics.As Nobel Prize-winning economist Ronald Coase once cynically observed, ‘If you torture data long enough, it will confess.' Lying with statistics is a time-honoured con. In Standard Deviations, ec

  8. Characterization of protein kinase CK2 protein subunits and p53 in F9 teratocarcinoma cells in the absence and presence of cisplatin

    DEFF Research Database (Denmark)

    Küpper, M; Köster, M; Schmidt-Spaniol, I;

    1994-01-01

    ) after separation by anionic exchange chromatography (MA7Q, BioRad) of the crude cellular extracts from cisplatin-treated cells, lower CK2 activity was found in the peak fractions confirming the results obtained with crude cellular extracts; (c) besides the detection of CK2 alpha subunit by...

  9. The Protein Kinase CK2 Mediates Cross-Talk between Auxin- and Salicylic Acid-Signaling Pathways in the Regulation of PINOID Transcription.

    Science.gov (United States)

    Armengot, Laia; Caldarella, Eleonora; Marquès-Bueno, Maria Mar; Martínez, M Carmen

    2016-01-01

    The protein kinase CK2 is a ubiquitous and highly conserved enzyme, the activity of which is vital for eukaryotic cells. We recently demonstrated that CK2 modulates salicylic acid (SA) homeostasis in Arabidopsis thaliana, and that functional interplay between CK2 and SA sustains transcriptional expression of PIN-FORMED (PIN) genes. In this work, we show that CK2 also plays a key role in the transcriptional regulation of PINOID (PID), an AGC protein kinase that modulates the apical/basal localization of auxin-efflux transporters. We show that PID transcription is up-regulated by auxin and by SA and that CK2 is involved in both pathways. On the one hand, CK2 activity is required for proteosome-dependent degradation of AXR3, a member of the AUX/IAA family of auxin transcriptional repressors that must be degraded to activate auxin-responsive gene expression. On the other hand, the role of CK2 in SA homeostasis and, indirectly, in SA-driven PID transcription, was confirmed by using Arabidopsis NahG transgenic plants, which cannot accumulate SA. In conclusion, our results evidence a role for CK2 as a functional link in the negative cross-talk between auxin- and SA-signaling. PMID:27275924

  10. The Protein Kinase CK2 Mediates Cross-Talk between Auxin- and Salicylic Acid-Signaling Pathways in the Regulation of PINOID Transcription.

    Directory of Open Access Journals (Sweden)

    Laia Armengot

    Full Text Available The protein kinase CK2 is a ubiquitous and highly conserved enzyme, the activity of which is vital for eukaryotic cells. We recently demonstrated that CK2 modulates salicylic acid (SA homeostasis in Arabidopsis thaliana, and that functional interplay between CK2 and SA sustains transcriptional expression of PIN-FORMED (PIN genes. In this work, we show that CK2 also plays a key role in the transcriptional regulation of PINOID (PID, an AGC protein kinase that modulates the apical/basal localization of auxin-efflux transporters. We show that PID transcription is up-regulated by auxin and by SA and that CK2 is involved in both pathways. On the one hand, CK2 activity is required for proteosome-dependent degradation of AXR3, a member of the AUX/IAA family of auxin transcriptional repressors that must be degraded to activate auxin-responsive gene expression. On the other hand, the role of CK2 in SA homeostasis and, indirectly, in SA-driven PID transcription, was confirmed by using Arabidopsis NahG transgenic plants, which cannot accumulate SA. In conclusion, our results evidence a role for CK2 as a functional link in the negative cross-talk between auxin- and SA-signaling.

  11. Phosphorylation of the Fas associated factor FAF1 by protein kinase CK2 and identification of serines 289 and 291 as the in vitro phosphorylation sites

    DEFF Research Database (Denmark)

    Jensen, H H; Hjerrild, M; Guerra, B; Larsen, Martin Røssel; Højrup, P; Boldyreff, B

    2001-01-01

    We previously identified the human Fas associated factor (FAF1) as one of the interacting partners of protein kinase CK2 beta subunit. Since FAF1 is a phosphoprotein we investigated whether it is a substrate for CK2. Here, we report the full length human FAF1 cDNA sequence, expression of FAF1 in...

  12. A Process Deviation Analysis Framework

    OpenAIRE

    Depaire, Benoit; Swinnen, Jo; Jans, Mieke; Vanhoof, Koen

    2013-01-01

    Process deviation analysis is becoming increasingly important for companies. This paper presents a framework which structures the field of process deviation analysis and identies new research opportunities. Application of the framework starts from managerial questions which relate to specific deviation categories and methodological steps. Finally a general outline to detect high-level process deviations is formulated.

  13. Exploring the prominent performance of CX-4945 derivatives as protein kinase CK2 inhibitors by a combined computational study.

    Science.gov (United States)

    Wang, Xuwen; Pan, Peichen; Li, Youyong; Li, Dan; Hou, Tingjun

    2014-05-01

    Protein kinase CK2, also known as casein kinase II, is related to various cellular events and is a potential target for numerous cancers. In this study, we attempted to gain more insight into the inhibition process of CK2 by a series of CX-4945 derivatives through an integrated computational study that combines molecular docking, molecular dynamics (MD) simulations, and binding free energy calculations. Based on the binding poses predicted by molecular docking, the MD simulations were performed to explore the dynamic binding processes for ten selected inhibitors. Then, both Molecular Mechanics/Poisson Boltzmann Surface Area (MM/PBSA) and Molecular Mechanics/Generalized Born Surface Area (MM/GBSA) techniques were employed to predict the binding affinities of the studied systems. The predicted binding energies of the selected inhibitors correlate well with their experimental activities (r(2) = 0.78). The van der Waals term is the most favorable component for the total energies. The free energy decomposition on a per residue basis reveals that the residue K68 is essential for the electrostatic interactions between CK2 and the studied inhibitors and numerous residues, including L45, V53, V66, F113, M163 and I174, play critical roles in forming van der Waals interactions with the inhibitors. Finally, a number of new derivatives were designed and the binding affinity and the predicted binding free energies of each designed molecule were obtained on the basis of molecular docking and MM/PBSA. It is expected that our research will benefit the future rational design of novel and potent inhibitors of CK2. PMID:24647611

  14. CK2 activity is required for the interaction of FGF14 with voltage-gated sodium channels and neuronal excitability.

    Science.gov (United States)

    Hsu, Wei-Chun J; Scala, Federico; Nenov, Miroslav N; Wildburger, Norelle C; Elferink, Hannah; Singh, Aditya K; Chesson, Charles B; Buzhdygan, Tetyana; Sohail, Maveen; Shavkunov, Alexander S; Panova, Neli I; Nilsson, Carol L; Rudra, Jai S; Lichti, Cheryl F; Laezza, Fernanda

    2016-06-01

    Recent data shows that fibroblast growth factor 14 (FGF14) binds to and controls the function of the voltage-gated sodium (Nav) channel with phenotypic outcomes on neuronal excitability. Mutations in the FGF14 gene in humans have been associated with brain disorders that are partially recapitulated in Fgf14(-/-) mice. Thus, signaling pathways that modulate the FGF14:Nav channel interaction may be important therapeutic targets. Bioluminescence-based screening of small molecule modulators of the FGF14:Nav1.6 complex identified 4,5,6,7 -: tetrabromobenzotriazole (TBB), a potent casein kinase 2 (CK2) inhibitor, as a strong suppressor of FGF14:Nav1.6 interaction. Inhibition of CK2 through TBB reduces the interaction of FGF14 with Nav1.6 and Nav1.2 channels. Mass spectrometry confirmed direct phosphorylation of FGF14 by CK2 at S228 and S230, and mutation to alanine at these sites modified FGF14 modulation of Nav1.6-mediated currents. In 1 d in vitro hippocampal neurons, TBB induced a reduction in FGF14 expression, a decrease in transient Na(+) current amplitude, and a hyperpolarizing shift in the voltage dependence of Nav channel steady-state inactivation. In mature neurons, TBB reduces the axodendritic polarity of FGF14. In cornu ammonis area 1 hippocampal slices from wild-type mice, TBB impairs neuronal excitability by increasing action potential threshold and lowering firing frequency. Importantly, these changes in excitability are recapitulated in Fgf14(-/-) mice, and deletion of Fgf14 occludes TBB-dependent phenotypes observed in wild-type mice. These results suggest that a CK2-FGF14 axis may regulate Nav channels and neuronal excitability.-Hsu, W.-C. J., Scala, F., Nenov, M. N., Wildburger, N. C., Elferink, H., Singh, A. K., Chesson, C. B., Buzhdygan, T., Sohail, M., Shavkunov, A. S., Panova, N. I., Nilsson, C. L., Rudra, J. S., Lichti, C. F., Laezza, F. CK2 activity is required for the interaction of FGF14 with voltage-gated sodium channels and neuronal

  15. Assessment of the effect of deviated nasal septum on the structure of nasal cavity.

    Science.gov (United States)

    Wang, Junguo; Dou, Xin; Liu, Dingding; Song, Panpan; Qian, Xiaoyun; Wang, Shoulin; Gao, Xia

    2016-06-01

    The present study was aimed to investigate the effects of DNS on the structure of nasal cavity. The paranasal sinus coronal view CT of 108 patients with DNS and 129 hospitalized patients without DNS was retrospectively analyzed. The transverse diameter of nasal cavity (a), transverse diameter of nasal cavity and paranasal sinus (b), angle between maxillary and palatal bone, interalveolar distance, and maxillary rotation distance were measured. The ratio of a/b in experimental group was 0.367 ± 0.006 which was significantly (P = 0.0023) less than that in control group (0.391 ± 0.005). For the angle between maxillary and palatal bone, there was no significant difference found between DNS and control group for both right and left sides. The interalveolar distance was 40.75 mm in experimental group, and 38.8 mm in control (P = 0.0002). For the maxillary rotation distance, findings were considered as significant (P DNS affects the development of nasal cavity and paranasal sinus, as well as increases the interalveolar distance and maxillary rotation distance. These influences may be caused by the alteration of airflow inside the nasal cavities. PMID:26370235

  16. THE INVESTMENT STRUCTURE, PRODUCTION, FINANCIAL AND ECONOMIC INDICATORS IN FISH FARM ACTIVITY. THE DEVIATIONS AND THEIR MEANINGS

    Directory of Open Access Journals (Sweden)

    Eng.Camelia Luchian

    2013-08-01

    Full Text Available The production, the income and the expenditures on the total and also on the main structural elements in this paper, reveals levels and also limits on fishing activities specific indicators. Through the standard deviation and the variation coefficients, that are physical and on percentage played, it was possible to characterize the investment structure in the fish farm Blăgeşti establishment, but also the production activity in the first five years. Through the given values levels, it has been able to ascertain the fish farm production risk and the appreciation made through the values obtained frames a small variation (values below the 10% level. It has resulted that the production and income carried out from fisherieson the five-year period covers correlation variations, direct, which shows a low variation level for all statistical indicators analyzed.

  17. Selectivity analysis of protein kinase CK2 inhibitors DMAT, TBB and resorufin in cisplatin-induced stress responses

    DEFF Research Database (Denmark)

    Fritz, Gerhard; Issinger, Olaf-Georg; Olsen, Birgitte Brinkmann

    2009-01-01

    DMAT, TBB and resorufin differ in their selectivity against PI3K family members, since PI3K and DNA-PK are subject to inhibition by DMAT and TBB, however, not by resorufin. TBB and DMAT treatment together with cisplatin lead to an inhibition of cisplatin-induced stress signaling (as detected...... by phosphorylation of JNK and H2AX). In the case of resorufin no interference with the stress-signaling pathway is observed, supporting the notion that TBB and DMAT interfere with upstream molecules involved in genotoxic stress signaling. We have also tested the protein kinase CK2 inhibitors with respect to cell...

  18. Deviating From the Benchmarks

    DEFF Research Database (Denmark)

    Rocha, Vera; Van Praag, Mirjam; Carneiro, Anabela

    This paper studies three related questions: To what extent otherwise similar startups employ different quantities and qualities of human capital at the moment of entry? How persistent are initial human capital choices over time? And how does deviating from human capital benchmarks influence firm...... survival? The analysis is based on a matched employer-employee dataset and covers about 17,500 startups in manufacturing and services. We adopt a new procedure to estimate individual benchmarks for the quantity and quality of initial human resources, acknowledging correlations between hiring decisions......, founders human capital, and the ownership structure of startups (solo entrepreneurs versus entrepreneurial teams). We then study the survival implications of exogenous deviations from these benchmarks, based on spline models for survival data. Our results indicate that (especially negative) deviations from...

  19. CX-4945, an orally bioavailable selective inhibitor of protein kinase CK2, inhibits prosurvival and angiogenic signaling and exhibits antitumor efficacy.

    Science.gov (United States)

    Siddiqui-Jain, Adam; Drygin, Denis; Streiner, Nicole; Chua, Peter; Pierre, Fabrice; O'Brien, Sean E; Bliesath, Josh; Omori, Mayuko; Huser, Nanni; Ho, Caroline; Proffitt, Chris; Schwaebe, Michael K; Ryckman, David M; Rice, William G; Anderes, Kenna

    2010-12-15

    Malignant transformation and maintenance of the malignant phenotype depends on oncogenic and non-oncogenic proteins that are essential to mediate oncogene signaling and to support the altered physiologic demands induced by transformation. Protein kinase CK2 supports key prosurvival signaling pathways and represents a prototypical non-oncogene. In this study, we describe CX-4945, a potent and selective orally bioavailable small molecule inhibitor of CK2. The antiproliferative activity of CX-4945 against cancer cells correlated with expression levels of the CK2α catalytic subunit. Attenuation of PI3K/Akt signaling by CX-4945 was evidenced by dephosphorylation of Akt on the CK2-specific S129 site and the canonical S473 and T308 regulatory sites. CX-4945 caused cell-cycle arrest and selectively induced apoptosis in cancer cells relative to normal cells. In models of angiogenesis, CX-4945 inhibited human umbilical vein endothelial cell migration, tube formation, and blocked CK2-dependent hypoxia-induced factor 1 alpha (HIF-1α) transcription in cancer cells. When administered orally in murine xenograft models, CX-4945 was well tolerated and demonstrated robust antitumor activity with concomitant reductions of the mechanism-based biomarker phospho-p21 (T145). The observed antiproliferative and anti-angiogenic responses to CX-4945 in tumor cells and endothelial cells collectively illustrate that this compound exerts its antitumor effects through inhibition of CK2-dependent signaling in multiple pathways. Finally, CX-4945 is the first orally bioavailable small molecule inhibitor of CK2 to advance into human clinical trials, thereby paving the way for an entirely new class of targeted treatment for cancer. PMID:21159648

  20. Geometry drives the "deviated-bending" of the bi-tubular structures of the 9 + 2 axoneme in the flagellum.

    Science.gov (United States)

    Cibert, Christian; Heck, Jean-Vivien

    2004-11-01

    The axoneme "9 + 2" is basically a system constituted of a cylinder of 9 microtubule doublets surrounding a central pair of microtubules. These bi-tubular structures are considered as the support system of the active molecular complexes that generate and regulate the axonemal movement. Schoutens has calculated their moments of inertia [Schoutens, 1994: Journal of Theoretical Biology 171:163-177]. The results obtained allowed us to assume that these bi-tubular systems are endowed with dynamic properties that could be involved in the regulation of the axonemal machinery. For the first time, using the finite elements methods and the resistance of material principles, we have now calculated that the curvature of the axoneme induces the deviated-bending of the bi-tubular structures of the axoneme, because of their geometry only; they behave as beams in a framework. This approach is similar to the one used to measure the deflection of a single microtubule [Kasas et al., 2004: Chem Phys Chem 5:252-257]. These behaviors induce internal movement or constraints of either couples or triplets of doublets within the axonemal cylinder that could be directly involved in a constrained or a spontaneous "convergence/divergence" equilibrium of the cylindrical generatrices that they draw along the axonemal cylinder, which could apparently regulate the activity of the axonemal motors (the dynein arms). These results are discussed here, taking into consideration the dynamic propagation of the wave train along the flagellar axoneme, and the regulated balance between the activities of the two opposite sides of the axoneme during the beat. This study raises a few questions about the architecture-activity duo of the axonemal doublets. PMID:15368611

  1. Integrated transcriptomic and proteomic analysis identifies protein kinase CK2 as a key signaling node in an inflammatory cytokine network in ovarian cancer cells

    Science.gov (United States)

    Kulbe, Hagen; Iorio, Francesco; Chakravarty, Probir; Milagre, Carla S.; Moore, Robert; Thompson, Richard G.; Everitt, Gemma; Canosa, Monica; Montoya, Alexander; Drygin, Denis; Braicu, Ioana; Sehouli, Jalid; Saez-Rodriguez, Julio; Cutillas, Pedro R.; Balkwill, Frances R.

    2016-01-01

    We previously showed how key pathways in cancer-related inflammation and Notch signaling are part of an autocrine malignant cell network in ovarian cancer. This network, which we named the “TNF network”, has paracrine actions within the tumor microenvironment, influencing angiogenesis and the immune cell infiltrate. The aim of this study was to identify critical regulators in the signaling pathways of the TNF network in ovarian cancer cells that might be therapeutic targets. To achieve our aim, we used a systems biology approach, combining data from phospho-proteomic mass spectrometry and gene expression array analysis. Among the potential therapeutic kinase targets identified was the protein kinase Casein kinase II (CK2). Knockdown of CK2 expression in malignant cells by siRNA or treatment with the specific CK2 inhibitor CX-4945 significantly decreased Notch signaling and reduced constitutive cytokine release in ovarian cancer cell lines that expressed the TNF network as well as malignant cells isolated from high grade serous ovarian cancer ascites. The expression of the same cytokines was also inhibited after treatment with CX-4945 in a 3D organotypic model. CK2 inhibition was associated with concomitant inhibition of proliferative activity, reduced angiogenesis and experimental peritoneal ovarian tumor growth. In conclusion, we have identified kinases, particularly CK2, associated with the TNF network that may play a central role in sustaining the cytokine network and/or mediating its effects in ovarian cancer. PMID:26871292

  2. The regulatory beta-subunit of protein kinase CK2 regulates cell-cycle progression at the onset of mitosis

    DEFF Research Database (Denmark)

    Yde, C W; Olsen, B B; Meek, D;

    2008-01-01

    Cell-cycle transition from the G(2) phase into mitosis is regulated by the cyclin-dependent protein kinase 1 (CDK1) in complex with cyclin B. CDK1 activity is controlled by both inhibitory phosphorylation, catalysed by the Myt1 and Wee1 kinases, and activating dephosphorylation, mediated by the CDC...... interference results in delayed cell-cycle progression at the onset of mitosis. Knockdown of CK2beta causes stabilization of Wee1 and increased phosphorylation of CDK1 at the inhibitory Tyr15. PLK1-Wee1 association is an essential event in the degradation of Wee1 in unperturbed cell cycle. We have found that...... regulatory subunit, identifying it as a new component of signaling pathways that regulate cell-cycle progression at the entry of mitosis.Oncogene advance online publication, 12 May 2008; doi:10.1038/onc.2008.146....

  3. Large-deviation principles, stochastic effective actions, path entropies, and the structure and meaning of thermodynamic descriptions

    International Nuclear Information System (INIS)

    The meaning of thermodynamic descriptions is found in large-deviations scaling (Ellis 1985 Entropy, Large Deviations, and Statistical Mechanics (New York: Springer); Touchette 2009 Phys. Rep. 478 1-69) of the probabilities for fluctuations of averaged quantities. The central function expressing large-deviations scaling is the entropy, which is the basis both for fluctuation theorems and for characterizing the thermodynamic interactions of systems. Freidlin-Wentzell theory (Freidlin and Wentzell 1998 Random Perturbations in Dynamical Systems 2nd edn (New York: Springer)) provides a quite general formulation of large-deviations scaling for non-equilibrium stochastic processes, through a remarkable representation in terms of a Hamiltonian dynamical system. A number of related methods now exist to construct the Freidlin-Wentzell Hamiltonian for many kinds of stochastic processes; one method due to Doi (1976 J. Phys. A: Math. Gen. 9 1465-78; 1976 J. Phys. A: Math. Gen. 9 1479) and Peliti (1985 J. Physique 46 1469; 1986 J. Phys. A: Math. Gen. 19 L365, appropriate to integer counting statistics, is widely used in reaction-diffusion theory. Using these tools together with a path-entropy method due to Jaynes (1980 Annu. Rev. Phys. Chem. 31 579-601), this review shows how to construct entropy functions that both express large-deviations scaling of fluctuations, and describe system-environment interactions, for discrete stochastic processes either at or away from equilibrium. A collection of variational methods familiar within quantum field theory, but less commonly applied to the Doi-Peliti construction, is used to define a 'stochastic effective action', which is the large-deviations rate function for arbitrary non-equilibrium paths. We show how common principles of entropy maximization, applied to different ensembles of states or of histories, lead to different entropy functions and different sets of thermodynamic state variables. Yet the relations among all these levels of

  4. p53 and the ribosomal protein L5 participate in high molecular mass complex formation with protein kinase CK2 in murine teratocarcinoma cell line F9 after serum stimulation and cisplatin treatment

    DEFF Research Database (Denmark)

    Guerra, B; Issinger, O G

    evidence by immunoprecipitation for an association of protein kinase CK2 holoenzyme (alpha2beta2), p53, and the ribosomal protein L5. The results suggest complexes between the CK2 holoenzyme and p53 but also p53/CKbeta complexes. Furthermore we provide evidence for the existence of high molecular mass...

  5. X-radiographic study of rare-earth compounds with special regardment of modulated structures. The response of the crystal structure to stoichiometry deviations

    International Nuclear Information System (INIS)

    Even shortly after World War II, as large amounts of ultrapure rare earths (RE) became available for scientific research, a large reservoir of peculiar phenomena was uncovered. These had not been investigated before or were completely unknown. Examples of these phenomena are, magnetic ordering, the KONDO effect, quantum critical points, heavy fermion behaviour, as well as superconductivity. A strong influence of small variations of the chemical composition on the physical properties had been observed. The main focus of the present thesis is the detailed elucidation of the crystal structure of fundamental representatives of this class of substances, as well as the influence of dedicated variations of the chemical composition on their structure and properties. In particular, the characterisation of modulated crystals is an important facet. A large spectrum of physical methods, especially X-ray diffraction, is employed in the investigations. Results on oriented intergrowth in the Y-Ni-B-C system, incommensurately ordered vacancies in the Ce-Si system, incorporation of stacking faults as well as commensurately ordered transition metal atoms (TM) in the RE-TM-Si system and site specific occupancy in the Y-Mn-Fe-O system are presented. Their elucidation is reported for the first time. It is shown which consequences the structural peculiarities will have on the physical properties. An objective of this thesis is to give an overview of the possible ''answers'' that can be obtained with regard to the influence of the crystal structure of rare earth transition metal compounds on deviations of the chemical composition. (orig.)

  6. Protein kinase CK2 inhibition down modulates the NF-κB and STAT3 survival pathways, enhances the cellular proteotoxic stress and synergistically boosts the cytotoxic effect of bortezomib on multiple myeloma and mantle cell lymphoma cells.

    Directory of Open Access Journals (Sweden)

    Sabrina Manni

    Full Text Available CK2 is a pivotal pro-survival protein kinase in multiple myeloma that may likely impinge on bortezomib-regulated cellular pathways. In the present study, we investigated CK2 expression in multiple myeloma and mantle cell lymphoma, two bortezomib-responsive B cell tumors, as well as its involvement in bortezomib-induced cytotoxicity and signaling cascades potentially mediating bortezomib resistance. In both tumors, CK2 expression correlated with that of its activated targets NF-κB and STAT3 transcription factors. Bortezomib-induced proliferation arrest and apoptosis were significantly amplified by the simultaneous inhibition of CK2 with two inhibitors (CX-4945 and K27 in multiple myeloma and mantle cell lymphoma cell lines, in a model of multiple myeloma bone marrow microenvironment and in cells isolated from patients. CK2 inhibition empowered bortezomib-triggered mitochondrial-dependent cell death. Phosphorylation of NF-κB p65 on Ser529 (a CK2 target site and rise of the levels of the endoplasmic reticulum stress kinase/endoribonuclease Ire1α were markedly reduced upon CK2 inhibition, as were STAT3 phospho Ser727 levels. On the contrary, CK2 inhibition increased phospho Ser51 eIF2α levels and enhanced the bortezomib-dependent accumulation of poly-ubiquitylated proteins and of the proteotoxic stress-associated chaperone Hsp70. Our data suggest that CK2 over expression in multiple myeloma and mantle cell lymphoma cells might sustain survival signaling cascades and can antagonize bortezomib-induced apoptosis at different levels. CK2 inhibitors could be useful in bortezomib-based combination therapies.

  7. Enhancing the Apoptotic Potential of Insulin-Like Growth Factor-Binding Protein-3 in Prostate Cancer by Modulation of CK2 Phosphorylation

    OpenAIRE

    Cobb, Laura J.; Mehta, Hemal; Cohen, Pinchas

    2009-01-01

    IGF-binding protein 3 (IGFBP-3) promotes apoptosis by both IGF-dependent and -independent mechanisms. We have previously reported that phosphorylation of IGFBP-3 (S156) by DNA-dependent protein kinase enhances its nuclear accumulation and is essential for its ability to interact with retinoid X receptor-α and induce apoptosis in cultured prostate cancer cells. Using specific chemical inhibitors and small interfering RNA, we demonstrate that preventing casein kinase 2 (CK2) activation enhanced...

  8. Human herpesvirus 6B induces phosphorylation of p53 in its regulatory domain by a CK2- and p38-independent pathway

    DEFF Research Database (Denmark)

    Øster, Bodil; Bundgaard, Bettina; Hupp, TR;

    2008-01-01

    Here, we demonstrate that human herpesvirus 6B (HHV-6B) infection upregulates the tumour suppressor p53 and induces phosphorylation of p53 at Ser392. Interestingly, phosphorylation at the equivalent site has previously been shown to correlate with p53 tumour suppression in murine models. Although...... or Cdk9, eluted in column fractions that phosphorylated p53 at Ser392. However, treatment of cells with neither the CK2 and Cdk9 inhibitor 5,6-dichloro-1-beta-d-ribofuranosylbenzimidazole (DRB) nor p38 kinase inhibitors reduced HHV-6B-induced Ser392 phosphorylation significantly. Knockdown of the CK2......beta subunit or p38alpha by small interfering RNA had no effect on HHV-6B-induced phosphorylation of p53 at Ser392. Thus, HHV-6B induces p53 Ser392 phosphorylation by an atypical pathway independent of CK2 and p38 kinases, whereas mitogen-activated protein (MAP) kinase signalling pathways are involved...

  9. LARGE DEVIATIONS AND MODERATE DEVIATIONS FOR SUMS OF NEGATIVELY DEPENDENT RANDOM VARIABLES

    Institute of Scientific and Technical Information of China (English)

    Liu Li; Wan Chenggao; Feng Yanqin

    2011-01-01

    In this article, we obtain the large deviations and moderate deviations for negatively dependent (ND) and non-identically distributed random variables defined on (-∞, +∞). The results show that for some non-identical random variables, precise large deviations and moderate deviations remain insensitive to negative dependence structure.

  10. Phosphorylation of CRN2 by CK2 regulates F-actin and Arp2/3 interaction and inhibits cell migration

    OpenAIRE

    Xavier, Charles Peter; Rastetter, Raphael H.; Bloemacher, Margit; Morgan Beesly, Reginald Owen; Fernández Fernández, María Pilar; Wang, Conan; Osman, Asiah; Miyata, Yoshihiko; (et al.)

    2012-01-01

    CRN2 (synonyms: coronin 1C, coronin 3) functions in the re-organization of the actin network and is implicated in cellular processes like protrusion formation, secretion, migration and invasion. We demonstrate that CRN2 is a binding partner and substrate of protein kinase CK2, which phosphorylates CRN2 at S463 in its C-terminal coiled coil domain. Phosphomimetic S463D CRN2 loses the wild-type CRN2 ability to inhibit actin polymerization, to bundle F-actin, and to bind to the Arp2/3 complex. A...

  11. pVHL acts as an Adapter to Promote the Inhibitory Phosphorylation of the NF-κB Agonist Card9 by CK2

    OpenAIRE

    Yang, Haifeng; Minamishima, Yoji Andrew; Yan, Qin; Schlisio, Susanne; Benjamin L Ebert; Zhang, Xiaoping; Zhang, Liang; Kim, William Y.; Olumi, Aria F.; William G Kaelin

    2007-01-01

    The VHL tumor suppressor protein (pVHL) is part of an E3 ubiquitin ligase that targets HIF for destruction. pVHL-defective renal carcinoma cells exhibit increased NF-κB activity but the mechanism is unclear. NF-κB affects tumorigenesis and therapeutic resistance in some settings. We found that pVHL associates with the NF-κB agonist Card9 but does not target Card9 for destruction. Instead, pVHL serves as an adaptor that promotes the phosphorylation of the Card9 C-terminus by CK2. Elimination o...

  12. Generation of deviation parameters for amino acid singlets, doublets and triplets from three-dimensional structures of proteins and its implications for secondary structure prediction from amino acid sequences

    Indian Academy of Sciences (India)

    S A Mugilan; K Veluraja

    2000-03-01

    We present a new method, secondary structure prediction by deviation parameter (SSPDP) for predicting the secondary structure of proteins from amino acid sequence. Deviation parameters (DP) for amino acid singlets, doublets and triplets were computed with respect to secondary structural elements of proteins based on the dictionary of secondary structure prediction (DSSP)-generated secondary structure for 408 selected non-homologous proteins. To the amino acid triplets which are not found in the selected dataset, a DP value of zero is assigned with respect to the secondary structural elements of proteins. The total number of parameters generated is 15,432, in the possible parameters of 25,260. Deviation parameter is complete with respect to amino acid singlets, doublets, and partially complete with respect to amino acid triplets. These generated parameters were used to predict secondary structural elements from amino acid sequence. The secondary structure predicted by our method (SSPDP) was compared with that of single sequence (NNPREDICT) and multiple sequence (PHD) methods. The average value of the percentage of prediction accuracy for α-helix by SSPDP, NNPREDICT and PHD methods was found to be 57%, 44% and 69% respectively for the proteins in the selected dataset. For -strand the prediction accuracy is found to be 69%, 21% and 53% respectively by SSPDP, NNPREDICT and PHD methods. This clearly indicates that the secondary structure prediction by our method is as good as PHD method but much better than NNPREDICT method.

  13. Many-electron effects in photoelectron spectroscopy. [Deviations from Koopman's one-electron model, satellite structure, configuration interaction, mechanisms

    Energy Technology Data Exchange (ETDEWEB)

    Martin, R.L.

    1976-06-01

    The deviations from Koopmans' one-electron model of photoionization which lead to satellite structure in the photoelectron spectrum are examined within the formalism of configuration interaction (CI). The mechanisms which contribute to satellite intensity may be classified as continuum state configuration interaction, final ionic state configuration interaction, and initial state configuration interaction. The discussion centers around the last two mechanisms, these being the prime contributors to the satellite intensity well above threshold. Specific examples of theoretical ''spectra'' are presented for the F(1s) region of HF and the 1s region of neon. The agreement between theory and experiment is found to be excellent. In these two instances, initial state configuration interaction contributions increase the satellite intensity and are of nearly equal importance to the final ionic state mixing.

  14. Inhibition of protein kinase CK2 reduces CYP24A1 expression and enhances 1,25-dihydroxyvitamin D3 anti-tumor activity in human prostate cancer cells

    Science.gov (United States)

    Luo, Wei; Yu, Wei-Dong; Ma, Yingyu; Chernov, Mikhail; Trump, Donald L.; Johnson, Candace S.

    2013-01-01

    Vitamin D has broad range of physiological functions and anti-tumor effects. 24-hydroxylase, encoded by the CYP24A1 gene, is the key enzyme for degrading many forms of vitamin D including the most active form, 1,25D3. Inhibition of CYP24A1 enhances 1,25D3 anti-tumor activity. In order to isolate regulators of CYP24A1 expression in prostate cancer cells, we established a stable prostate cancer cell line PC3 with CYP24A1 promoter driving luciferase expression to screen a small molecular library for compounds that inhibit CYP24A1 promoter activity. From this screening, we identified, 4,5,6,7-tetrabromobenzimidazole (TBBz), a protein kinase CK2 selective inhibitor as a disruptor of CYP24A1 promoter activity. We show that TBBz inhibits CYP24A1 promoter activity induced by 1,25D3 in prostate cancer cells. In addition, TBBz downregulates endogenous CYP24A1 mRNA level in TBBz treated PC3 cells. Furthermore, siRNA-mediated CK2 knockdown reduces 1,25D3 induced CYP24A1 mRNA expression in PC3 cells. These results suggest that CK2 contributes to 1,25D3 mediated target gene expression. Lastly, inhibition of CK2 by TBBz or CK2 siRNA significantly enhanced 1,25D3 mediated anti-proliferative effect in vitro and in vivo in a xenograft model. In summary, our findings reveal that protein kinase CK2 is involved in the regulation of CYP24A1 expression by 1,25D3 and CK2 inhibitor enhances 1,25D3 mediated anti-tumor effect. PMID:23358686

  15. Identification and characterization of a novel gene, c1orf109, encoding a CK2 substrate that is involved in cancer cell proliferation

    Directory of Open Access Journals (Sweden)

    Liu Shan-shan

    2012-05-01

    Full Text Available Abstract Background In the present study we identified a novel gene, Homo Sapiens Chromosome 1 ORF109 (c1orf109, GenBank ID: NM_017850.1, which encodes a substrate of CK2. We analyzed the regulation mode of the gene, the expression pattern and subcellular localization of the predicted protein in the cell, and its role involving in cell proliferation and cell cycle control. Methods Dual-luciferase reporter assay, chromatin immunoprecipitation and EMSA were used to analysis the basal transcriptional requirements of the predicted promoter regions. C1ORF109 expression was assessed by western blot analysis. The subcellular localization of C1ORF109 was detected by immunofluorescence and immune colloidal gold technique. Cell proliferation was evaluated using MTT assay and colony-forming assay. Results We found that two cis-acting elements within the crucial region of the c1orf109 promoter, one TATA box and one CAAT box, are required for maximal transcription of the c1orf109 gene. The 5′ flanking region of the c1orf109 gene could bind specific transcription factors and Sp1 may be one of them. Employing western blot analysis, we detected upregulated expression of c1orf109 in multiple cancer cell lines. The protein C1ORF109 was mainly located in the nucleus and cytoplasm. Moreover, we also found that C1ORF109 was a phosphoprotein in vivo and could be phosphorylated by the protein kinase CK2 in vitro. Exogenous expression of C1ORF109 in breast cancer Hs578T cells induced an increase in colony number and cell proliferation. A concomitant rise in levels of PCNA (proliferating cell nuclear antigen and cyclinD1 expression was observed. Meanwhile, knockdown of c1orf109 by siRNA in breast cancer MDA-MB-231 cells confirmed the role of c1orf109 in proliferation. Conclusions Taken together, our findings suggest that C1ORF109 may be the downstream target of protein kinase CK2 and involved in the regulation of cancer cell proliferation.

  16. Effect of an inhibitor of protein kinase CK2 on radiosensitivity of human lung cancer cells%蛋白激酶CK2抑制剂对肺癌细胞系放射敏感性的影响

    Institute of Scientific and Technical Information of China (English)

    李倩雯; 刘莉; 伍钢; 孟睿; 李珂; 张盛; 杨天洋; 周瑜; 李振宇; 周方正; 马虹; 董晓荣

    2015-01-01

    Objective To evaluate the effect of an inhibitor of protein kinase CK2 on the radiosensitivity of human lung cancer cells. Methods The protein levels of CK2 α and β subunits in different lung cancer cell lines were measured by Western blot. Clonogenic assays were performed to assess the effect of a CK2 inhibitor, quinalizarin, on the radiosensitivity of lung adenocarcinoma A549 cells and large cell lung cancer H460 cells. The effects of the combination of quinalizarin and X⁃ray irradiation on the apoptosis and cell cycle of A549 and H460 cells were measured by flow cytometry. The differences between two groups were analyzed by analysis of variance and t⁃test. Results Western blot revealed that theαandβsubunits of CK2 were overexpressed in non⁃small cell lung cancer cells (A549,H460, and H1650 cells), which were considered insensitive to X⁃ray irradiation, whereas a lower expression of these two subunits were found in small cell lung cancer cells ( H446 cells) , which were sensitive to X⁃ray irradiation. The clonogenic assays showed that A549 and H460 cells pre⁃exposed to quinalizarin had a significantly lower survival fraction compared with the control group and had a sensitization enhancement ratio greater than 1. 0( D0 were 2. 771 and 2. 463 respectively) . The combination of quinalizarin and X⁃ray irradiation did not increase the apoptosis of A549 and H460 cells ( X⁃ray+Quinalizarin vs. Quinalizarin, A549, P=0. 487 and H460, P=0. 254) , but caused significant G2/M arrest compared with under X⁃ray irradiation only ( X⁃ray +Quinalizarin:X⁃ray, A549, P=0. 000;H460, P=0. 002 and X⁃ray+Quinalizarin:Quinalizarin, A549, P=0. 000;H460,P=0. 000) . Conclusions Quinalizarin, as a CK2 inhibitor, can increase the radiosensitivity of non⁃small cell lung cancer cells.%目的:探讨蛋白激酶CK2抑制剂对肺癌细胞系放射敏感性的影响。方法通过蛋白印迹法检测蛋白激酶CK2α、β亚基在不同肺癌细胞系中的表达

  17. CK2 inhibitor CX-4945 blocks TGF-β1-induced epithelial-to-mesenchymal transition in A549 human lung adenocarcinoma cells.

    Directory of Open Access Journals (Sweden)

    Jiyeon Kim

    Full Text Available BACKGROUND: The epithelial-to-mesenchymal transition (EMT is a major phenotype of cancer metastasis and invasion. As a druggable cancer target, the inhibition of protein kinase CK2 (formally named to casein kinase 2 has been suggested as a promising therapeutic strategy to treat EMT-controlled cancer metastasis. This study aimed to evaluate the effect of the CK2 inhibitor CX-4945 on the processes of cancer migration and invasion during the EMT in A549 human lung adenocarcinoma cells. MATERIALS AND METHODS: The effect of CX-4945 on TGF-β1-induced EMT was evaluated in A549 cells treated with TGF-β1 (5 ng/ml and CX-4945. The effect of CX-4945 on TGF-β1-induced cadherin switch and activation of key signaling molecules involved in Smad, non-Smad, Wnt and focal adhesion signaling pathways were investigated by Western blot analysis, immunocytochemistry and reporter assay. Additionally, the effect of CX-4945 on TGF-β1-induced migration and invasion was investigated by wound healing assay, Boyden chamber assay, gelatin zymography, and the quantitative real-time PCR. RESULTS: CX-4945 inhibits the TGF-β1-induced cadherin switch and the activation of key signaling molecules involved in Smad (Smad2/3, Twist and Snail, non-Smad (Akt and Erk, Wnt (β-catenin and focal adhesion signaling pathways (FAK, Src and paxillin that cooperatively regulate the overall process of EMT. As a result, CX-4945 inhibits the migration and invasion of A549 cells accompanied with the downregulation of MMP-2 and 9. CONCLUSIONS: Clinical evaluation of CX-4945 in humans as a single agent in solid tumors and multiple myeloma has established its promising pharmacokinetic, pharmacodynamic, and safety profiles. Beyond regression of tumor mass, CX-4945 may be advanced as a new therapy for cancer metastasis and EMT-related disorders.

  18. Segmentation Using Symmetry Deviation

    DEFF Research Database (Denmark)

    Hollensen, Christian; Højgaard, L.; Specht, L.;

    2011-01-01

    the 10 hypopharyngeal cancer patients to find anatomical symmetry and evaluate it against the standard deviation of the normal patients to locate pathologic volumes. Combining the information with an absolute PET threshold of 3 Standard uptake value (SUV) a volume was automatically delineated. The...... overlap of automated segmentations on manual contours was evaluated using concordance index and sensitivity for the hypopharyngeal patients. The resulting concordance index and sensitivity was compared with the result of using a threshold of 3 SUV using a paired t-test. Results: The anatomical and...... overlap concordance index and sensitivity of respectively 0.43±0.15 and 0.56±0.18 was acquired. It was compared to the concordance index of segmentation using absolute threshold of 3 SUV giving respectively 0.41±0.16 and 0.51±0.19 for concordance index and sensitivity yielding p-values of 0.33 and 0...

  19. Diversity-oriented synthesis of pyrazolo[4,3-b]indoles by gold-catalysed three-component annulation: application to the development of a new class of CK2 inhibitors.

    OpenAIRE

    Hou, Zengye; Oishi, Shinya; Suzuki, Yamato; Kure, Tatsuhide; Nakanishi, Isao; Hirasawa, Akira; Tsujimoto, Gozoh; Ohno, Hiroaki; Fujii, Nobutaka

    2013-01-01

    Pyrazolo[4,3-b]indole derivatives have been designed as novel CK2 inhibitor compounds based on the binding mode analysis of a previously reported phenylpyrazole-type CK2 inhibitor. A series of pyrazolo[4,3-b]indoles and related dihydropyrazolo[4,3-b]indoles were efficiently prepared from simple starting materials using a gold-catalysed three-component annulation reaction as a key step. Several of the newly synthesized compounds displayed high levels of inhibitory activity, indicating that the...

  20. 新疆产业结构对就业结构偏离效应实证研究∗%A Study of the Deviation Effect between the Industrial Structure and the Employment Structure in Xinjiang

    Institute of Scientific and Technical Information of China (English)

    赵军; 时乐乐

    2013-01-01

      运用改革开放以来新疆的数据,实证分析产业结构对就业结构的偏离效应。结果显示:新疆各地州的产业结构对就业结构偏离效应有很大差异;第一产业存在大量剩余劳动力;第二产业的产业结构和就业结构的偏离效应正在扩大,存在很大的就业缺口;第三产业的就业空间已经饱和。最后根据实证研究结论指出新疆目前产业就业发展面临的问题。%Using the data of Xinjiang since the implementation of the Reform and Opening-up Policy, this paper makes an empirical analysis of the deviation effect of Xinjiang regional industry on the employment structure. It concludes that: there exists a big difference in the deviation effects between Xinjiang regional industrial structure and the employment structure; there is a big surplus labor in the primary industry and the deviation effect of the industrial structure and the employment structure is expanding in the secondary industry — a big employment demand. The employment in the tertiary industry is nearly saturated. Finally, it points out the problems currently facing the industry and employment development in Xinjiang.

  1. Remark on Structure of Expectation Values of Flavor-Lepton Numbers with respect to Neutrino-Source Hadron States: Deviation from Fermi's Golden Relatio

    CERN Document Server

    Fujii, Kanji

    2016-01-01

    In our preceeding reports, we have pointed out that a unified description of weak decays accompanying neutrinos and the oscillation process is obtained on the basis of the expectation values of flavor-neutrino numbers with respect to the neutrino-source hadron state. In the present report, we investigate the effect on the expectation values due to the deviation from Fermi's golden relation, and give concrete features of these deviations in the case of $\\pi^+$ and $K^+$-decays under the simple situation with the $3$-momentum $\\vec{p_A}=0$ for $A=\\pi^+$, $K^+$. %numerical results under simple situations.

  2. Determination of mRNA, and protein levels of p53, MDM2 and protein kinase CK2 subunits in F9 cells after treatment with the apoptosis-inducing drugs cisplatin and carboplatin

    DEFF Research Database (Denmark)

    Siemer, S; Ornskov, D; Guerra, B;

    1999-01-01

    Protein kinase CK2 is a pleiotropic serine/threonine kinase which has been shown to phosphorylate numerous substrates. Evidence is accumulating that CK2 may exist complexed to a variety of cellular proteins, e.g. p53, MDM2, and A-Raf. Here, we explored the effects of the chemotherapeutic drugs...... cisplatin and carboplatin on the mRNA and protein levels of p53, MDM2 and CK2 in a murine teratocarcinoma cell line F9. Northern and Western blot analyses were performed and the CK2 activity was determined. The degree of apoptosis after drug treatment was assessed using the TUNEL test. Six hours after...... cisplatin and carboplatin treatment, the RNA level of p53 dropped by 59% +/- 9% and 86% +/- 8% respectively, whereas the observed level of p53 protein rose to 7 and 10 times over the untreated control, respectively. Treatment with 33 microM cisplatin prompted apoptosis as early as 4 h after drug treatment...

  3. Large deviations and idempotent probability

    CERN Document Server

    Puhalskii, Anatolii

    2001-01-01

    In the view of many probabilists, author Anatolii Puhalskii''s research results stand among the most significant achievements in the modern theory of large deviations. In fact, his work marked a turning point in the depth of our understanding of the connections between the large deviation principle (LDP) and well-known methods for establishing weak convergence results.Large Deviations and Idempotent Probability expounds upon the recent methodology of building large deviation theory along the lines of weak convergence theory. The author develops an idempotent (or maxitive) probability theory, introduces idempotent analogues of martingales (maxingales), Wiener and Poisson processes, and Ito differential equations, and studies their properties. The large deviation principle for stochastic processes is formulated as a certain type of convergence of stochastic processes to idempotent processes. The author calls this large deviation convergence.The approach to establishing large deviation convergence uses novel com...

  4. On geodesic deviation in Schwarzschild spacetime

    CERN Document Server

    Philipp, Dennis; Laemmerzahl, Claus; Deshpande, Kaustubh

    2015-01-01

    For metrology, geodesy and gravimetry in space, satellite based instruments and measurement techniques are used and the orbits of the satellites as well as possible deviations between nearby ones are of central interest. The measurement of this deviation itself gives insight into the underlying structure of the spacetime geometry, which is curved and therefore described by the theory of general relativity (GR). In the context of GR, the deviation of nearby geodesics can be described by the Jacobi equation that is a result of linearizing the geodesic equation around a known reference geodesic with respect to the deviation vector and the relative velocity. We review the derivation of this Jacobi equation and restrict ourselves to the simple case of the spacetime outside a spherically symmetric mass distribution and circular reference geodesics to find solutions by projecting the Jacobi equation on a parallel propagated tetrad as done by Fuchs. Using his results, we construct solutions of the Jacobi equation for...

  5. Large deviations on Markov towers

    International Nuclear Information System (INIS)

    We give a sufficient condition to hold a full large deviation principle for Markov tower maps induced from return time functions. As an application of this result we show the large deviation principle of level 2 for some class of smooth dynamical systems with nonuniform hyperbolicity

  6. Basic residues in the 74-83 and 191-198 segments of protein kinase CK2 catalytic subunit are implicated in negative but not in positive regulation by the beta-subunit

    DEFF Research Database (Denmark)

    Sarno, S; Vaglio, P; Marin, O; Meggio, F; Issinger, O G; Pinna, L A

    1997-01-01

    Protein kinase CK2 is a ubiquitous pleiotropic serine/threonine protein kinase whose holoenzyme is comprised of two catalytic (alpha and/or alpha') and two non-catalytic, beta-subunits. The beta-subunit possesses antagonist functions that can be physically dissected by generating synthetic...... fragments encompassing its N-terminal and C-terminal domains. Here we show that by mutating basic residues in the 74-77 and in the 191-198 regions of the alpha-subunit, the negative regulation by the beta-subunit and by its N-terminal synthetic fragment CK2beta-(1-77), which is observable using calmodulin...... as a substrate for phosphorylation, is drastically reduced. In contrast, the positive regulation by a C-terminal, CK2beta-(155-215)-peptide is unaffected or even increased. Moreover, the basal activity of alpha mutants K74-77A, K79R80K83A, and R191R195K198A toward specific peptide substrates is...

  7. X-radiographic study of rare-earth compounds with special regardment of modulated structures. The response of the crystal structure to stoichiometry deviations; Roentgengraphische Untersuchung von Seltenerdverbindungen mit besonderer Beruecksichtigung modulierter Strukturen. Die Antwort der Kristallstruktur auf Stoechiometrieabweichungen

    Energy Technology Data Exchange (ETDEWEB)

    Leisegang, Tilmann

    2010-04-09

    Even shortly after World War II, as large amounts of ultrapure rare earths (RE) became available for scientific research, a large reservoir of peculiar phenomena was uncovered. These had not been investigated before or were completely unknown. Examples of these phenomena are, magnetic ordering, the KONDO effect, quantum critical points, heavy fermion behaviour, as well as superconductivity. A strong influence of small variations of the chemical composition on the physical properties had been observed. The main focus of the present thesis is the detailed elucidation of the crystal structure of fundamental representatives of this class of substances, as well as the influence of dedicated variations of the chemical composition on their structure and properties. In particular, the characterisation of modulated crystals is an important facet. A large spectrum of physical methods, especially X-ray diffraction, is employed in the investigations. Results on oriented intergrowth in the Y-Ni-B-C system, incommensurately ordered vacancies in the Ce-Si system, incorporation of stacking faults as well as commensurately ordered transition metal atoms (TM) in the RE-TM-Si system and site specific occupancy in the Y-Mn-Fe-O system are presented. Their elucidation is reported for the first time. It is shown which consequences the structural peculiarities will have on the physical properties. An objective of this thesis is to give an overview of the possible ''answers'' that can be obtained with regard to the influence of the crystal structure of rare earth transition metal compounds on deviations of the chemical composition. (orig.)

  8. Insights from soft X-rays: the chlorine and sulfur sub-structures of a CK2alpha/DRB complex

    OpenAIRE

    Raaf, J.; Issinger, O.-G.; Niefind, K.

    2008-01-01

    The diffraction pattern of a protein crystal is normally a product of the interference of electromagnetic waves scattered by electrons of the crystalline sample. The diffraction pattern undergoes systematic changes in case additionally X-ray absorption occurs, meaning if the wavelength of the primary X-ray beam is relatively close to the absorption edge of selected elements of the sample. The resulting effects are summarized as "anomalous dispersion" and can be always observed with "soft" X-r...

  9. Large deviations and rain showers

    OpenAIRE

    Wilkinson, Michael

    2015-01-01

    Rainfall from ice-free cumulus clouds requires collisions of large numbers of microscopic droplets to create every raindrop. The onset of rain showers can be surprisingly rapid, much faster than the mean time required for a single collision. Large-deviation theory is used to explain this observation.

  10. Standard Deviation for Small Samples

    Science.gov (United States)

    Joarder, Anwar H.; Latif, Raja M.

    2006-01-01

    Neater representations for variance are given for small sample sizes, especially for 3 and 4. With these representations, variance can be calculated without a calculator if sample sizes are small and observations are integers, and an upper bound for the standard deviation is immediate. Accessible proofs of lower and upper bounds are presented for…

  11. Large deviations and rain showers

    CERN Document Server

    Wilkinson, Michael

    2016-01-01

    Rainfall from ice-free cumulus clouds requires collisions of large numbers of microscopic droplets to create every raindrop. The onset of rain showers can be surprisingly rapid, much faster than the mean time required for a single collision. Large-deviation theory is used to explain this observation.

  12. Inactivation of the FoxO3a transcription factor is associated with the production of reactive oxygen species during protein kinase CK2 downregulation-mediated senescence in human colon cancer and breast cancer cells.

    Science.gov (United States)

    Park, Seong-Yeol; Bae, Young-Seuk

    2016-09-01

    We previously showed that protein kinase CK2 downregulation mediates senescence through the reactive oxygen species (ROS)-p53-p21(Cip1/WAF1) pathway in various human cells. In the present study, we investigated whether the FoxO3a transcription factor is associated with ROS production during CK2 downregulation-induced senescence in human colon cancer HCT116 and breast cancer MCF-7 cells. FoxO3a overexpression suppressed ROS production and p53 stabilization induced by a CK2α knockdown. CK2α downregulation induced nuclear export of FoxO3a through stimulation of AKT-mediated phosphorylation of FoxO3a and decreased transcription of its target genes (Cu/ZnSOD, MnSOD, and catalase). In contrast, CK2α overexpression inhibited AKT-mediated FoxO3a phosphorylation. This resulted in nuclear accumulation of FoxO3a, and elevated expression of its target genes. Therefore, these data indicate for the first time that CK2 downregulation stimulates ROS generation by inhibiting FoxO3a during premature senescence in human colon and breast cancer cells. PMID:27470586

  13. Perception of aircraft Deviation Cues

    Science.gov (United States)

    Martin, Lynne; Azuma, Ronald; Fox, Jason; Verma, Savita; Lozito, Sandra

    2005-01-01

    To begin to address the need for new displays, required by a future airspace concept to support new roles that will be assigned to flight crews, a study of potentially informative display cues was undertaken. Two cues were tested on a simple plan display - aircraft trajectory and flight corridor. Of particular interest was the speed and accuracy with which participants could detect an aircraft deviating outside its flight corridor. Presence of the trajectory cue significantly reduced participant reaction time to a deviation while the flight corridor cue did not. Although non-significant, the flight corridor cue seemed to have a relationship with the accuracy of participants judgments rather than their speed. As this is the second of a series of studies, these issues will be addressed further in future studies.

  14. Worldline deviations of charged spinning particles

    Energy Technology Data Exchange (ETDEWEB)

    Heydari-Fard, M. [Department of Physics, Shahid Beheshti University, Evin, 19839 Tehran (Iran, Islamic Republic of); Mohseni, M. [Physics Department, Payame Noor University, 19395-4697 Tehran (Iran, Islamic Republic of)]. E-mail: m-mohseni@pnu.ac.ir; Sepangi, H.R. [Department of Physics, Shahid Beheshti University, Evin, 19839 Tehran (Iran, Islamic Republic of); Institute for Studies in Theoretical Physics and Mathematics, Tehran (Iran, Islamic Republic of)

    2005-10-20

    The geodesic deviation equation is generalized to worldline deviation equations describing the relative accelerations of charged spinning particles in the framework of Dixon-Souriau equations of motion.

  15. Worldline deviations of charged spinning particles

    CERN Document Server

    Heydari-Fard, M; Sepangi, H R

    2005-01-01

    The geodesic deviation equation is generalized to worldline deviation equations describing the relative accelerations of charged spinning particles in the framework of Dixon-Souriau equations of motion.

  16. The Analysis of a Deviation of Investment and Corporate Governance.

    OpenAIRE

    HISA Shoichi

    2008-01-01

    Investment of firms is affected by not only fundamentals factors, but liquidity constraint, ownership or corporate structure. Information structure between manager and owner is a significant factor to decide the level of investment, and deviation of investment from optimal condition. The reputation model between manager and owner suggest that the separate of ownership and management may induce the deviation of investment, and indicate that governance structure is important to reduce it. In th...

  17. The Analysis of a Deviation of Investment and Corporate Governance

    OpenAIRE

    Shoichi Hisa

    2008-01-01

    Investment of firms is affected by not only fundamentals factors, but liquidity constraint, ownership or corporate structure. Information structure between manager and owner is a significant factor to decide the level of investment, and deviation of investment from optimal condition. The reputation model between manager and owner suggest that the separate of ownership and management may induce the deviation of investment, and indicate that governance structure is important to reduce it. In th...

  18. Large deviations and portfolio optimization

    Science.gov (United States)

    Sornette, Didier

    Risk control and optimal diversification constitute a major focus in the finance and insurance industries as well as, more or less consciously, in our everyday life. We present a discussion of the characterization of risks and of the optimization of portfolios that starts from a simple illustrative model and ends by a general functional integral formulation. A major item is that risk, usually thought of as one-dimensional in the conventional mean-variance approach, has to be addressed by the full distribution of losses. Furthermore, the time-horizon of the investment is shown to play a major role. We show the importance of accounting for large fluctuations and use the theory of Cramér for large deviations in this context. We first treat a simple model with a single risky asset that exemplifies the distinction between the average return and the typical return and the role of large deviations in multiplicative processes, and the different optimal strategies for the investors depending on their size. We then analyze the case of assets whose price variations are distributed according to exponential laws, a situation that is found to describe daily price variations reasonably well. Several portfolio optimization strategies are presented that aim at controlling large risks. We end by extending the standard mean-variance portfolio optimization theory, first within the quasi-Gaussian approximation and then using a general formulation for non-Gaussian correlated assets in terms of the formalism of functional integrals developed in the field theory of critical phenomena.

  19. Deviations in human gut microbiota

    DEFF Research Database (Denmark)

    Casén, C; Vebø, H C; Sekelja, M;

    2015-01-01

    BACKGROUND: Dysbiosis is associated with many diseases, including irritable bowel syndrome (IBS), inflammatory bowel diseases (IBD), obesity and diabetes. Potential clinical impact of imbalance in the intestinal microbiota suggests need for new standardised diagnostic methods to facilitate...... microbiome profiling. AIM: To develop and validate a novel diagnostic test using faecal samples to profile the intestinal microbiota and identify and characterise dysbiosis. METHODS: Fifty-four DNA probes targeting ≥300 bacteria on different taxonomic levels were selected based on ability to distinguish...... potential clinically relevant deviation in the microbiome from normobiosis. This model was tested in different samples from healthy volunteers and IBS and IBD patients (n = 330) to determine the ability to detect dysbiosis. RESULTS: Validation confirms dysbiosis was detected in 73% of IBS patients, 70% of...

  20. [The crooked nose: correction of dorsal and caudal septal deviations].

    Science.gov (United States)

    Foda, H M T

    2010-09-01

    The deviated nose represents a complex cosmetic and functional problem. Septal surgery plays a central role in the successful management of the externally deviated nose. This study included 800 patients seeking rhinoplasty to correct external nasal deviations; 71% of these suffered from variable degrees of nasal obstruction. Septal surgery was necessary in 736 (92%) patients, not only to improve breathing, but also to achieve a straight, symmetric external nose. A graduated surgical approach was adopted to allow correction of the dorsal and caudal deviations of the nasal septum without weakening its structural support to the nasal dorsum or nasal tip. The approach depended on full mobilization of deviated cartilage, followed by straightening of the cartilage and its fixation in the corrected position by using bony splinting grafts through an external rhinoplasty approach. PMID:20809379

  1. Synergistic cytotoxic effects of bortezomib and CK2 inhibitor CX-4945 in acute lymphoblastic leukemia: turning off the prosurvival ER chaperone BIP/Grp78 and turning on the pro-apoptotic NF-κB

    Science.gov (United States)

    Buontempo, Francesca; Orsini, Ester; Lonetti, Annalisa; Cappellini, Alessandra; Chiarini, Francesca; Evangelisti, Camilla; Evangelisti, Cecilia; Melchionda, Fraia; Pession, Andrea; Bertaina, Alice; Locatelli, Franco; Bertacchini, Jessika; Neri, Luca Maria; McCubrey, James A.; Martelli, Alberto Maria

    2016-01-01

    The proteasome inhibitor bortezomib is a new targeted treatment option for refractory or relapsed acute lymphoblastic leukemia (ALL) patients. However, a limited efficacy of bortezomib alone has been reported. A terminal pro-apoptotic endoplasmic reticulum (ER) stress/unfolded protein response (UPR) is one of the several mechanisms of bortezomib-induced apoptosis. Recently, it has been documented that UPR disruption could be considered a selective anti-leukemia therapy. CX-4945, a potent casein kinase (CK) 2 inhibitor, has been found to induce apoptotic cell death in T-ALL preclinical models, via perturbation of ER/UPR pathway. In this study, we analyzed in T- and B-ALL preclinical settings, the molecular mechanisms of synergistic apoptotic effects observed after bortezomib/CX-4945 combined treatment. We demonstrated that, adding CX-4945 after bortezomib treatment, prevented leukemic cells from engaging a functional UPR in order to buffer the bortezomib-mediated proteotoxic stress in ER lumen. We documented that the combined treatment decreased pro-survival ER chaperon BIP/Grp78 expression, via reduction of chaperoning activity of Hsp90. Bortezomib/CX-4945 treatment inhibited NF-κB signaling in T-ALL cell lines and primary cells from T-ALL patients, but, intriguingly, in B-ALL cells the drug combination activated NF-κB p65 pro-apoptotic functions. In fact in B-cells, the combined treatment induced p65-HDAC1 association with consequent repression of the anti-apoptotic target genes, Bcl-xL and XIAP. Exposure to NEMO (IKKγ)-binding domain inhibitor peptide reduced the cytotoxic effects of bortezomib/CX-4945 treatment. Overall, our findings demonstrated that CK2 inhibition could be useful in combination with bortezomib as a novel therapeutic strategy in both T- and B-ALL. PMID:26593250

  2. Introducing the Mean Absolute Deviation "Effect" Size

    Science.gov (United States)

    Gorard, Stephen

    2015-01-01

    This paper revisits the use of effect sizes in the analysis of experimental and similar results, and reminds readers of the relative advantages of the mean absolute deviation as a measure of variation, as opposed to the more complex standard deviation. The mean absolute deviation is easier to use and understand, and more tolerant of extreme…

  3. The Standard Deviation of Launch Vehicle Environments

    Science.gov (United States)

    Yunis, Isam

    2005-01-01

    Statistical analysis is used in the development of the launch vehicle environments of acoustics, vibrations, and shock. The standard deviation of these environments is critical to accurate statistical extrema. However, often very little data exists to define the standard deviation and it is better to use a typical standard deviation than one derived from a few measurements. This paper uses Space Shuttle and expendable launch vehicle flight data to define a typical standard deviation for acoustics and vibrations. The results suggest that 3dB is a conservative and reasonable standard deviation for the source environment and the payload environment.

  4. Nasal Septal Deviation and Facial Skeletal Asymmetries.

    Science.gov (United States)

    Hartman, Christopher; Holton, Nathan; Miller, Steven; Yokley, Todd; Marshall, Steven; Srinivasan, Sreedevi; Southard, Thomas

    2016-03-01

    During ontogeny, the nasal septum exerts a morphogenetic influence on the surrounding facial skeleton. While the influence of the septum is well established in long snouted animal models, its role in human facial growth is less clear. If the septum is a facial growth center in humans, we would predict that deviated septal growth would be associated with facial skeletal asymmetries. Using computed tomographic (CT) scans of n = 55 adult subjects, the purpose of this study was to test whether there is a correlation between septal deviation and facial asymmetries using three-dimensional (3D) geometric morphometric techniques. We calculated deviation as a percentage of septal volume relative to the volume of a modeled non-deviated septum. We then recorded skeletal landmarks representing the nasal, palatal, and lateral facial regions. Landmark data were superimposed using Procrustes analysis. First, we examined the correlation between nasal septal deviation and the overall magnitude of asymmetry. Next, we assessed whether there was a relationship between nasal septal deviation and more localized aspects of asymmetry using multivariate regression analysis. Our results indicate that while there was no correlation between septal deviation and the overall magnitude of asymmetry, septal deviation was associated with asymmetry primarily in the nasal floor and the palatal region. Septal deviation was unassociated with asymmetries in the lateral facial skeleton. Though we did not test the causal relationship between nasal septal deviation and facial asymmetry, our results suggest that the nasal septum may have an influence on patterns of adult facial form. PMID:26677010

  5. One-deviation principle in coalition formation

    OpenAIRE

    Hannu Vartiainen

    2008-01-01

    We study coalitional one-deviation principle in a framework a la Chwe (1994). The principle requires that an active coalition or any of its subcoalition will not benefit from a single deviation to a strategy that specifies, for each history of coalitional moves, an active coalition and its move. A strategy meeting the one-deviation property is characterized. Moreover, it is shown to exist. Finally, the results are compared to the existing theories of coalitional games.

  6. Moderate Deviations for Mean Field Particle Models

    CERN Document Server

    Del Moral, Pierre; Wu, Liming

    2012-01-01

    This article is concerned with moderate deviation principles of a general class of mean eld type interacting particle models. We discuss functional moderate deviations of the occupation measures for both the strong -topology on the space of fi nite and bounded measures as well as for the corresponding stochastic processes on some class of functions equipped with the uniform topology. Our approach is based on an original semigroup analysis combined with stochastic perturbation techniques and projective limit large deviation methods.

  7. Introducing the mean absolute deviation 'effect' size.

    OpenAIRE

    Gorard, S.

    2015-01-01

    This paper revisits the use of effect sizes in the analysis of experimental and similar results, and reminds readers of the relative advantages of the mean absolute deviation as a measure of variation, as opposed to the more complex standard deviation. The mean absolute deviation is is easier to use and understand, and more tolerant of extreme values. The paper then proposes the use of an easy to comprehend effect size based on the mean difference between treatment groups, divided by the mean...

  8. Small shape deviations causes complex dynamics in large electric generators

    Science.gov (United States)

    Lundström, Niklas L. P.; Grafström, Anton; Aidanpää, Jan-Olov

    2014-05-01

    We prove that combinations of small eccentricity, ovality and/or triangularity in the rotor and stator can produce complex whirling motions of an unbalanced rotor in large synchronous generators. It is concluded which structures of shape deviations that are more harmful, in the sense of producing complex whirling motions, than others. For each such structure, we derive simplified equations of motions from which we conclude analytically the relation between shape deviations and mass unbalance that yield non-smooth whirling motions. Finally we discuss validity of our results in the sense of modeling of the unbalanced magnetic pull force.

  9. Exploring Students' Conceptions of the Standard Deviation

    Science.gov (United States)

    delMas, Robert; Liu, Yan

    2005-01-01

    This study investigated introductory statistics students' conceptual understanding of the standard deviation. A computer environment was designed to promote students' ability to coordinate characteristics of variation of values about the mean with the size of the standard deviation as a measure of that variation. Twelve students participated in an…

  10. Deviation of Register in English Talk Shows

    Institute of Scientific and Technical Information of China (English)

    贺静

    2016-01-01

    Halliday's register theory and G. Leech's deviation of register are the general knowledge of the topic in the academic field. This paper focuses on connection between deviation of register and humorous effects in English talk shows. The significance of this paper is to put this theory in broader use and to help English learners better understand western humor and talk shows.

  11. Functional large deviations and moderate deviations for Markov-modulated risk models with reinsurance

    OpenAIRE

    Gao, Fuqing; Yan, Jun

    2008-01-01

    We establish a functional large deviation principle and a functional moderate deviation principle for Markov-modulated risk models with reinsurance by constructing an exponential martingale approach. Lundberg's estimate of the ruin time is also presented.

  12. DEVIATIONS -OHJELMISTO LAATUPOIKKEAMIEN KÄSITTELYYN

    OpenAIRE

    Hilama, Sakari

    2009-01-01

    Opinnäytetyö toteutettiin Documenta Oy:n toimeksiantona. Opinnäytetyön tarkoituksena oli toteuttaa Windows SharePoint Services 3.0 -alustaa hyödyntävä ohjelmistotuote nimeltä Deviations. Deviations -ohjelmiston tarkoituksena on tarjota organisaatiolle mukautuva työväline esimerkiksi palautteen tai laatupoikkeamien hallintaan ja prosessoituun käsittelyyn. Deviations -ohjelmisto toteutettiin niin, että ohjelmisto mukautuu organisaation olemassa oleviin prosesseihin. Tämä vaatimus huomioitiin oh...

  13. Sport and Social Deviations - a Prognostic Attitude

    Directory of Open Access Journals (Sweden)

    Kosiewicz Jerzy

    2014-06-01

    Full Text Available The author focuses his attention first of all on social deviations which play a negative role in highly competitive sport. He tries to define - from the viewpoint of philosophy - how they will influence its future form.

  14. Geodesics deviation equation approach to chaos

    OpenAIRE

    Dobrowolski, Tomasz; Szczesny, Jerzy

    1999-01-01

    Geodesics deviation equation (GDE) is itroduced. In "adiabatic" approximation exact solution of the GDE if found. Perturbation theory in general case is formulated. Geometrical criterion of local instability which may lead to chaos is formulated.

  15. Logarithmic potential theory and large deviation

    OpenAIRE

    Bloom, T.; Levenberg, N.; Wielonsky, F.

    2014-01-01

    We derive a general large deviation principle for a canonical sequence of probability measures, having its origins in random matrix theory, on unbounded sets $K$ of ${\\bf C}$ with weakly admissible external fields $Q$ and very general measures $\

  16. An absolute deviation approach to assessing correlation.

    OpenAIRE

    Gorard, S.

    2015-01-01

    This paper describes two possible alternatives to the more traditional Pearson’s R correlation coefficient, both based on using the mean absolute deviation, rather than the standard deviation, as a measure of dispersion. Pearson’s R is well-established and has many advantages. However, these newer variants also have several advantages, including greater simplicity and ease of computation, and perhaps greater tolerance of underlying assumptions (such as the need for linearity). The first alter...

  17. A robust standard deviation control chart

    OpenAIRE

    Schoonhoven, M.; Does, R.J.M.M.

    2012-01-01

    This article studies the robustness of Phase I estimators for the standard deviation control chart. A Phase I estimator should be efficient in the absence of contaminations and resistant to disturbances. Most of the robust estimators proposed in the literature are robust against either diffuse disturbances, that is, outliers spread over the subgroups, or localized disturbances, which affect an entire subgroup. In this article, we compare various robust standard deviation estimators and propos...

  18. On the mean-standard deviation frontier

    OpenAIRE

    Eneas A. Caldiño

    1996-01-01

    This paper presents a characterization of the mean standard deviation frontier (MSF) in terms of pricing and averaging securities and explores the geometry of these securities relative to the geometry of the MSF. A summary of already known results is presented along with proof of new results. A measure of the distance between two mean standard deviation frontiers is presented here. This measure is related to asset pricing models which imply that security prices can be represented by a stochas...

  19. Kinematic Deviations In Children With Cerebral Palsy

    OpenAIRE

    Sangeux, Morgan; ARMAND, Stéphane

    2015-01-01

    In gait analysis, a large portion of the work consists in finding the underlying causes of the abnormal movement observed during walking. The patient’s kinematics of walking is compared to that of typically developed children and the deviations are further analysed. Over the years, clinicians have observed multiple-joints kinematics deviations that were frequent in children with cerebral palsy and devised gait patterns in order to group patients and support management algorithms. However, the...

  20. The large deviation approach to statistical mechanics

    Energy Technology Data Exchange (ETDEWEB)

    Touchette, Hugo [School of Mathematical Sciences, Queen Mary University of London, London E1 4NS (United Kingdom)], E-mail: h.touchette@qmul.ac.uk

    2009-07-15

    The theory of large deviations is concerned with the exponential decay of probabilities of large fluctuations in random systems. These probabilities are important in many fields of study, including statistics, finance, and engineering, as they often yield valuable information about the large fluctuations of a random system around its most probable state or trajectory. In the context of equilibrium statistical mechanics, the theory of large deviations provides exponential-order estimates of probabilities that refine and generalize Einstein's theory of fluctuations. This review explores this and other connections between large deviation theory and statistical mechanics, in an effort to show that the mathematical language of statistical mechanics is the language of large deviation theory. The first part of the review presents the basics of large deviation theory, and works out many of its classical applications related to sums of random variables and Markov processes. The second part goes through many problems and results of statistical mechanics, and shows how these can be formulated and derived within the context of large deviation theory. The problems and results treated cover a wide range of physical systems, including equilibrium many-particle systems, noise-perturbed dynamics, nonequilibrium systems, as well as multifractals, disordered systems, and chaotic systems. This review also covers many fundamental aspects of statistical mechanics, such as the derivation of variational principles characterizing equilibrium and nonequilibrium states, the breaking of the Legendre transform for nonconcave entropies, and the characterization of nonequilibrium fluctuations through fluctuation relations.

  1. Scaling Deviations for Neutrino Reactions in Aysmptotically Free Field Theories

    Science.gov (United States)

    Wilczek, F. A.; Zee, A.; Treiman, S. B.

    1974-11-01

    Several aspects of deep inelastic neutrino scattering are discussed in the framework of asymptotically free field theories. We first consider the growth behavior of the total cross sections at large energies. Because of the deviations from strict scaling which are characteristic of such theories the growth need not be linear. However, upper and lower bounds are established which rather closely bracket a linear growth. We next consider in more detail the expected pattern of scaling deviation for the structure functions and, correspondingly, for the differential cross sections. The analysis here is based on certain speculative assumptions. The focus is on qualitative effects of scaling breakdown as they may show up in the X and y distributions. The last section of the paper deals with deviations from the Callan-Gross relation.

  2. Investigating deviations from norms in court interpreting

    DEFF Research Database (Denmark)

    Dubslaff, Friedel; Martinsen, Bodil

    important for the study, we intend to conduct interviews instead. The purpose of the study is to investigate deviations from translational norms in court interpreting. More specifically, we aim to identify and describe instances of deviant behaviour on the part of the interpreters, discuss signs of possible...... deviant behaviour, explore why the deviations in question occur, find out what happens if deviations are perceived as such by the other participants involved in the interpreted event. We will reconstruct the norms in question by examining interpreters' and (mainly) professional users' behaviour in the...... the prevailing norms. Depending on the character of the deviant behaviour, the potency of the norms in question, extratextual sociocultural factors such as the interpreter's status in society, and many other factors, a broad range of sanctions is conceivable. However, we do not expect to find an...

  3. Spectral deviations for the damped wave equation

    OpenAIRE

    Anantharaman, Nalini

    2009-01-01

    We prove a Weyl-type fractal upper bound for the spectrum of the damped wave equation, on a negatively curved compact manifold. It is known that most of the eigenvalues have an imaginary part close to the average of the damping function. We count the number of eigenvalues in a given horizontal strip deviating from this typical behaviour; the exponent that appears naturally is the `entropy' that gives the deviation rate from the Birkhoff ergodic theorem for the geodesic flow. A Weyl-type lower...

  4. Detecting outliers: Do not use standard deviation around the mean, use absolute deviation around the median

    OpenAIRE

    Leys, Christophe; Ley, Christophe; Klein, Olivier; Bernard, Philippe; Licata, Laurent

    2013-01-01

    A survey revealed that researchers still seem to encounter difficulties to cope with outliers. Detecting outliers by determining an interval spanning over the mean plus/minus three standard deviations remains a common practice. However, since both the mean and the standard deviation are particularly sensitive to outliers, this method is problematic. We highlight the disadvantages of this method and present the median absolute deviation, an alternative and more robust measure of dispersion tha...

  5. Evolutionary implications of genetic code deviations

    International Nuclear Information System (INIS)

    By extending the standard genetic code into a temperature dependent regime, we propose a train of molecular events leading to alternative coding. The first few examples of these deviations have already been reported in some ciliated protozoans and Gram positive bacteria. A possible range of further alternative coding, still within the context of universality, is pointed out. (author)

  6. From Stein Identities to Moderate Deviations

    CERN Document Server

    Chen, Louis H Y; Shao, Qi-Man

    2009-01-01

    Stein's method is applied to obtain a Cram\\'er type moderate deviation result for dependent random variables whose dependence is defined in terms of a Stein identity. The result is optimal when applied to the combinatorial central limit theorem, the binary expansion of a random integer, the anti-voter model on a complete graph, and the Curie-Weiss model.

  7. Bodily Deviations and Body Image in Adolescence

    Science.gov (United States)

    Vilhjalmsson, Runar; Kristjansdottir, Gudrun; Ward, Dianne S.

    2012-01-01

    Adolescents with unusually sized or shaped bodies may experience ridicule, rejection, or exclusion based on their negatively valued bodily characteristics. Such experiences can have negative consequences for a person's image and evaluation of self. This study focuses on the relationship between bodily deviations and body image and is based on a…

  8. 41 CFR 101-1.110 - Deviation.

    Science.gov (United States)

    2010-07-01

    ... 41 Public Contracts and Property Management 2 2010-07-01 2010-07-01 true Deviation. 101-1.110 Section 101-1.110 Public Contracts and Property Management Federal Property Management Regulations System FEDERAL PROPERTY MANAGEMENT REGULATIONS GENERAL 1-INTRODUCTION 1.1-Regulation System § 101-1.110...

  9. Measuring the deviation from the Rutherford formula

    OpenAIRE

    Kuraev, E. A.; Shatnev, M.; Tomasi-Gustafsson, E.

    2009-01-01

    Modern experiments with heavy ion-leptons collisions open the possibility to measure the deviation of cross section of small angles electron(positron)-ion elastic scattering from the Rutherford formula due to multiple virtual photons exchange. The charge asymmetry and the polarization of the scattered leptons are calculated and numerical predictions are given. A generalization to elastic proton-nucleus scattering is discussed.

  10. Geometry of river networks. I. Scaling, fluctuations, and deviations

    International Nuclear Information System (INIS)

    This paper is the first in a series of three papers investigating the detailed geometry of river networks. Branching networks are a universal structure employed in the distribution and collection of material. Large-scale river networks mark an important class of two-dimensional branching networks, being not only of intrinsic interest but also a pervasive natural phenomenon. In the description of river network structure, scaling laws are uniformly observed. Reported values of scaling exponents vary, suggesting that no unique set of scaling exponents exists. To improve this current understanding of scaling in river networks and to provide a fuller description of branching network structure, here we report a theoretical and empirical study of fluctuations about and deviations from scaling. We examine data for continent-scale river networks such as the Mississippi and the Amazon and draw inspiration from a simple model of directed, random networks. We center our investigations on the scaling of the length of a subbasin's dominant stream with its area, a characterization of basin shape known as Hack's law. We generalize this relationship to a joint probability density, and provide observations and explanations of deviations from scaling. We show that fluctuations about scaling are substantial, and grow with system size. We find strong deviations from scaling at small scales which can be explained by the existence of a linear network structure. At intermediate scales, we find slow drifts in exponent values, indicating that scaling is only approximately obeyed and that universality remains indeterminate. At large scales, we observe a breakdown in scaling due to decreasing sample space and correlations with overall basin shape. The extent of approximate scaling is significantly restricted by these deviations, and will not be improved by increases in network resolution

  11. MODERATE DEVIATIONS AND LARGE DEVIATIONS FOR A TEST OF SYMMETRY BASED ON KERNEL DENSITY ESTIMATOR

    Institute of Scientific and Technical Information of China (English)

    He Xiaoxia; Gao Fuqing

    2008-01-01

    Let fn be a non-parametric kernel density estimator based on a kernel function K. And a sequence of independent and identically distributed random variables taking values in R. The goal of this article is to prove moderate deviations and large deviations for the statistic sup x∈R|fn(x) - fn(-X)|.

  12. Deviations from LTE in a stellar atmosphere

    Science.gov (United States)

    Kalkofen, W.; Klein, R. I.; Stein, R. F.

    1979-01-01

    Deviations for LTE are investigated in an atmosphere of hydrogen atoms with one bound level, satisfying the equations of radiative, hydrostatic, and statistical equilibrium. The departure coefficient and the kinetic temperature as functions of the frequency dependence of the radiative cross section are studied analytically and numerically. Near the outer boundary of the atmosphere, the departure coefficient is smaller than unity when the radiative cross section grows with frequency faster than with the square of frequency; it exceeds unity otherwise. Far from the boundary the departure coefficient tends to exceed unity for any frequency dependence of the radiative cross section. Overpopulation always implies that the kinetic temperature in the statistical-equilibrium atmosphere is higher than the temperature in the corresponding LTE atmosphere. Upper and lower bounds on the kinetic temperature are given for an atmosphere with deviations from LTE only in the optically shallow layers when the emergent intensity can be described by a radiation temperature.

  13. Large deviations for Markov processes with resetting.

    Science.gov (United States)

    Meylahn, Janusz M; Sabhapandit, Sanjib; Touchette, Hugo

    2015-12-01

    Markov processes restarted or reset at random times to a fixed state or region in space have been actively studied recently in connection with random searches, foraging, and population dynamics. Here we study the large deviations of time-additive functions or observables of Markov processes with resetting. By deriving a renewal formula linking generating functions with and without resetting, we are able to obtain the rate function of such observables, characterizing the likelihood of their fluctuations in the long-time limit. We consider as an illustration the large deviations of the area of the Ornstein-Uhlenbeck process with resetting. Other applications involving diffusions, random walks, and jump processes with resetting or catastrophes are discussed. PMID:26764673

  14. What is "Standard" About the Standard Deviation

    OpenAIRE

    Newberger, Florence; Safer, Alan M.; Watson, Saleem

    2010-01-01

    The choice of the formula for standard deviation is explained in elementary statistics textbooks in various ways. We give an explanation for this formula by representing the data as a vector in $\\mathbb R^n$ and considering its distance from a central tendency vector. In this setting the "standard" formula represents a shortest distance in the standard metric. We also show that different metrics lead to different measures of central tendency.

  15. Note onset deviations as musical piece signatures.

    Directory of Open Access Journals (Sweden)

    Joan Serrà

    Full Text Available A competent interpretation of a musical composition presents several non-explicit departures from the written score. Timing variations are perhaps the most important ones: they are fundamental for expressive performance and a key ingredient for conferring a human-like quality to machine-based music renditions. However, the nature of such variations is still an open research question, with diverse theories that indicate a multi-dimensional phenomenon. In the present study, we consider event-shift timing variations and show that sequences of note onset deviations are robust and reliable predictors of the musical piece being played, irrespective of the performer. In fact, our results suggest that only a few consecutive onset deviations are already enough to identify a musical composition with statistically significant accuracy. We consider a mid-size collection of commercial recordings of classical guitar pieces and follow a quantitative approach based on the combination of standard statistical tools and machine learning techniques with the semi-automatic estimation of onset deviations. Besides the reported results, we believe that the considered materials and the methodology followed widen the testing ground for studying musical timing and could open new perspectives in related research fields.

  16. Note onset deviations as musical piece signatures.

    Science.gov (United States)

    Serrà, Joan; Özaslan, Tan Hakan; Arcos, Josep Lluis

    2013-01-01

    A competent interpretation of a musical composition presents several non-explicit departures from the written score. Timing variations are perhaps the most important ones: they are fundamental for expressive performance and a key ingredient for conferring a human-like quality to machine-based music renditions. However, the nature of such variations is still an open research question, with diverse theories that indicate a multi-dimensional phenomenon. In the present study, we consider event-shift timing variations and show that sequences of note onset deviations are robust and reliable predictors of the musical piece being played, irrespective of the performer. In fact, our results suggest that only a few consecutive onset deviations are already enough to identify a musical composition with statistically significant accuracy. We consider a mid-size collection of commercial recordings of classical guitar pieces and follow a quantitative approach based on the combination of standard statistical tools and machine learning techniques with the semi-automatic estimation of onset deviations. Besides the reported results, we believe that the considered materials and the methodology followed widen the testing ground for studying musical timing and could open new perspectives in related research fields. PMID:23935971

  17. The Deviation of China’s Government Procurement Remedy System Structure Design Concept and Its Adjustment%我国政府采购救济制度构设理念之偏差及其调整

    Institute of Scientific and Technical Information of China (English)

    刘铠

    2015-01-01

    我国政府采购救济制度实践中所反映的问题在制度层面表现为质疑投诉程序冗长、救济范围较窄、救济对象欠全面等,其深层次的根源在于构设理念的偏差。行政控制理念主导下的政府采购救济制度存在内在缺失,与欧盟和GPA协定的理念模式相距甚远。由是,根本解决政府采购救济制度现实问题之策略应为:转变传统的行政权力主导的救济体系,在救济制度构设中充分考虑公益与私益、公平与效率、自由与秩序等价值目标的平衡。%The current problems reflected in the practice of China’s government procurement remedy system in institutional level include manifest as long challenge and complaint procedure, narrow scope of relief, incomprehensive recipients, and so on. Its deep cause is the deviation of the construction idea. There is an internal absence for government procurement remedy system dominated by administration controlling principle, and this is far from the conceptual model of European Union and GPA Agreement. Thus, the fundamental strategy to solve the real problem of government procurement remedy system is: transform the traditional executive power-dominated remedy system, in the construction of remedy system, as well as take full account of the balance of value goal, such as public and private interests, fairness and efficiency, liberty and order.

  18. 9 CFR 318.308 - Deviations in processing.

    Science.gov (United States)

    2010-01-01

    ...) Deviations in processing (or process deviations) must be handled according to: (1)(i) A HACCP plan for canned...) of this section. (c) (d) Procedures for handling process deviations where the HACCP plan...

  19. Observable Deviations from Homogeneity in an Inhomogeneous Universe

    CERN Document Server

    Giblin, John T; Starkman, Glenn D

    2016-01-01

    How does inhomogeneity affect our interpretation of cosmological observations? It has long been wondered to what extent the observable properties of an inhomogeneous universe differ from those of a corresponding Friedman-Lemaitre-Robertson-Walker (FLRW) model, and how the inhomogeneities affect that correspondence. Here, we use numerical relativity to study the behavior of light beams traversing an inhomogeneous universe and construct the resulting Hubble diagrams. The universe that emerges exhibits an average FLRW behavior, but inhomogeneous structures contribute to deviations in observables across the observer's sky. We also investigate the relationship between angular diameter distance and the angular extent of a source, finding deviations that grow with source redshift. These departures from FLRW are important path-dependent effects with implications for using real observables in an inhomogeneous universe such as our own.

  20. The deformation-stability fundamental length and deviations from c

    International Nuclear Information System (INIS)

    A fundamental length (or time) is conjectured in many contexts. The “stability of physical theories principle” provides an unambiguous derivation of the stable structures that Nature might have chosen for its algebraic framework. 1/c and ℏ are the deformation parameters that stabilize the Galilean and Poisson algebras. The stability principle applied to the Poincaré–Heisenberg algebra, yields two deformation parameters defining two length (or time) scales. One of the scales is probably related to Planck's length but the other might be much larger. This is used as working hypothesis to compute deviations from c in speed measurements of massless particles. -- Highlights: ► Fundamental length as one of the deformation parameters of the Poincaré–Heisenberg algebra. ► Conjecture that one of the deformation parameters is much larger than Planck's length. ► Deviations from c in speed measurements of massless wave packets.

  1. LARGE DEVIATIONS AND MODERATE DEVIATIONS FOR m-NEGATIVELY ASSOCIATED RANDOM VARIABLES

    Institute of Scientific and Technical Information of China (English)

    Hu Yijun; Ming Ruixing; Yang Wenquan

    2007-01-01

    M-negatively associated random variables, which generalizes the classical one of negatively associated random variables and includes m-dependent sequences as its particular case, are introduced and studied. Large deviation principles and moderate deviation upper bounds for stationary m-negatively associated random variables are proved.Kolmogorov-type and Marcinkiewicz-type strong laws of large numbers as well as the three series theorem for m-negatively associated random variables are also given.

  2. Standard deviation of scatterometer measurements from space.

    Science.gov (United States)

    Fischer, R. E.

    1972-01-01

    The standard deviation of scatterometer measurements has been derived under assumptions applicable to spaceborne scatterometers. Numerical results are presented which show that, with sufficiently long integration times, input signal-to-noise ratios below unity do not cause excessive degradation of measurement accuracy. The effects on measurement accuracy due to varying integration times and changing the ratio of signal bandwidth to IF filter-noise bandwidth are also plotted. The results of the analysis may resolve a controversy by showing that in fact statistically useful scatterometer measurements can be made from space using a 20-W transmitter, such as will be used on the S-193 experiment for Skylab-A.

  3. Standard deviation of the longest common subsequence

    OpenAIRE

    Lember, Jüri; Matzinger, Heinrich

    2009-01-01

    Let Ln be the length of the longest common subsequence of two independent i.i.d. sequences of Bernoulli variables of length n. We prove that the order of the standard deviation of Ln is $\\sqrt{n}$ , provided the parameter of the Bernoulli variables is small enough. This validates Waterman’s conjecture in this situation [Philos. Trans. R. Soc. Lond. Ser. B 344 (1994) 383–390]. The order conjectured by Chvatal and Sankoff [J. Appl. Probab. 12 (1975) 306–315], however, is different.

  4. Allan deviation analysis of financial return series

    Science.gov (United States)

    Hernández-Pérez, R.

    2012-05-01

    We perform a scaling analysis for the return series of different financial assets applying the Allan deviation (ADEV), which is used in the time and frequency metrology to characterize quantitatively the stability of frequency standards since it has demonstrated to be a robust quantity to analyze fluctuations of non-stationary time series for different observation intervals. The data used are opening price daily series for assets from different markets during a time span of around ten years. We found that the ADEV results for the return series at short scales resemble those expected for an uncorrelated series, consistent with the efficient market hypothesis. On the other hand, the ADEV results for absolute return series for short scales (first one or two decades) decrease following approximately a scaling relation up to a point that is different for almost each asset, after which the ADEV deviates from scaling, which suggests that the presence of clustering, long-range dependence and non-stationarity signatures in the series drive the results for large observation intervals.

  5. Deviation from Alday-Maldacena duality for wavy circle

    International Nuclear Information System (INIS)

    Alday-Maldacena conjecture is stated in this paper that the area AΠ of the minimal surface in AdS5 space with a boundary Π, located in Euclidean space at infinity of AdS5, coincides with a double integral DΠ along Π, the Abelian Wilson average in an auxiliary dual model. This comes from Alday and Maldacena's original proposal and the BDS conjecture on the extrapolation of the MHV amplitudes. The boundary Π is a polygon formed by momenta of n external light-like particles in N=4 SYM theory, and in a certain n=∞ limit it can be substituted by an arbitrary smooth curve (wavy circle). The Alday-Maldacena conjecture is known to be violated for n>5, when it fails to be supported by the peculiar global dual conformal invariance, however, the structure of deviations remains obscure. The case of wavy lines can appear more convenient for analysis of these deviations due to the systematic method developed in [H. Itoyama, A. Mironov, A. Morozov, Anomaly in n=∞ Alday-Maldacena duality for wavy circle, JHEP 0807 (2008) 024, (arXiv:0803.1547)] for (perturbative) evaluation of minimal areas, which is not yet available in the presence of angles at finite n. We correct a mistake in that paper and explicitly evaluate the h2h-bar2 terms, where the first deviation from the Alday-Maldacena duality arises for the wavy circle.

  6. Surgical Success Rates for Horizontal Concomitant Deviations According to the Type and Degree of Deviation

    Directory of Open Access Journals (Sweden)

    İhsan Çaça

    2004-01-01

    Full Text Available We evaluated the correlation with success rates and deviation type and degree inhorizontal concomitant deviations. 104 horizontal concomitan strabismus cases whowere operated in our clinic between January 1994 – December 2000 were included in thestudy. 56 cases undergone recession-resection procedure in the same eye 19 cases twomuscle recession and one muscle resection, 20 cases two muscle recession, 9 cases onlyone muscle recession. 10 ± prism diopter deviation in postoperative sixth monthexamination was accepted as surgical success.Surgical success rate was 90% and 89.3% in the cases with deviation angle of 15-30and 31-50 prism diopter respectively. Success rate was 78.9% if the angle was more than50 prism diopter. According to strabismus type when surgical success rate examined; inalternan esotropia 88.33%, in alternan exotropia 84.6%, in monocular esotropia 88%and in monocular exotropia 83.3% success was fixed. Statistically significant differencewas not found between strabismus type and surgical success rate. The binocular visiongaining rate was found as 51.8% after the treatment of cases.In strabismus surgery, preoperative deviation angle was found to be an effectivefactor on the success rate.

  7. Theory of Deviation and Its Application in College English Teaching

    Institute of Scientific and Technical Information of China (English)

    Xu Yanqiu

    2008-01-01

    Deviation is an important concept in stylistics.Besides Shklovskij and Mukarovsky,who made a theoreti cal generalization of deviational phenomena,Leech is the one who studies deviation systematically and catego rizes it into groups.To apply the theory of deviation to College English teaching is an effective way to culti rate students' interest in and aesthetic ability of English texts.

  8. Syntactic Deviations in the Novel The Sound and the Fury

    Directory of Open Access Journals (Sweden)

    Pooria Alirezazadeh

    2014-10-01

    Full Text Available This article looks at William Faulkner’s work The Sound and the Fury. The goals are to investigate different types of syntactic deviations in the novel, and how these deviations helped the writer to create a literary work in the field of modernist literature and stream of consciousness.  To this end, the theoretical framework for linguistic deviations proposed by Leech (1969 has been chosen. Most prior researches on linguistic deviations especially syntactic deviations focused on poetic text and classic prose. The present study was designed to address syntactic deviations in modern prose, and it highlights the role of syntactic deviations in modernist literature and psychological novel.

  9. LARGE DEVIATIONS FOR SOME DEPENDENT SEQUENCES

    Institute of Scientific and Technical Information of China (English)

    Hu Shuhe; Wang Xuejun

    2008-01-01

    Let (Xi) be a martingale difference sequence and Sn=n∑i=1 Xi. Suppose (Xi) is bounded in Lp. In the case p2, Lesigne and Volny (Stochastic Process. Appl. 96 (2001) 143) obtained the estimation μ(Sn n) < cn-p/2, Yulin Li (Statist. Probab.Lett. 62 (2003) 317) generalized the result to the case when p ∈(1, 2) and obtained μ(Sn n) < cn1-P, these are optimal in a certain sense. In this article, the authors study the large deviation of Sn for some dependent sequences and obtain the same order optimal upper bounds for μ(Sn n) as those for martingale difference sequence.

  10. Spotting deviations from R^2 inflation

    CERN Document Server

    de la Cruz-Dombriz, Alvaro; Odintsov, Sergei D; Saez-Gomez, Diego

    2016-01-01

    We discuss the soundness of inflationary scenarios in theories beyond the Starobinsky model, namely a class of theories described by arbitrary functions of the Ricci scalar and the K-essence field. We discuss the pathologies associated with higher-order equations of motion which will be shown to constrain the stability of this class of theories. We provide a general framework to calculate the slow-roll parameters and the corresponding mappings to the theory parameters. For paradigmatic gravitational models within the class of theories under consideration we illustrate the power of the Planck/Bicep2 latest results to constrain such gravitational Lagrangians. Finally, bounds for potential deviations from Starobinsky-like inflation are derived.

  11. Large Deviations and Asymptotic Methods in Finance

    CERN Document Server

    Gatheral, Jim; Gulisashvili, Archil; Jacquier, Antoine; Teichmann, Josef

    2015-01-01

    Topics covered in this volume (large deviations, differential geometry, asymptotic expansions, central limit theorems) give a full picture of the current advances in the application of asymptotic methods in mathematical finance, and thereby provide rigorous solutions to important mathematical and financial issues, such as implied volatility asymptotics, local volatility extrapolation, systemic risk and volatility estimation. This volume gathers together ground-breaking results in this field by some of its leading experts. Over the past decade, asymptotic methods have played an increasingly important role in the study of the behaviour of (financial) models. These methods provide a useful alternative to numerical methods in settings where the latter may lose accuracy (in extremes such as small and large strikes, and small maturities), and lead to a clearer understanding of the behaviour of models, and of the influence of parameters on this behaviour. Graduate students, researchers and practitioners will find th...

  12. Deviating measurements in radiation protection. Legal assessment of deviations in radiation protection measurements

    International Nuclear Information System (INIS)

    This study investigates how, from a legal point of view, deviations in radiation protection measurements should be treated in comparisons between measured results and limits stipulated by nuclear legislation or goods transport regulations. A case-by-case distinction is proposed which is based on the legal concequences of the respective measurement. Commentaries on nuclear law contain no references to the legal assessment of deviating measurements in radiation protection. The examples quoted in legal commentaries on civil and criminal proceedings of the way in which errors made in measurements for speed control and determinations of the alcohol content in the blood are to be taken into account, and a commentary on ozone legislation, are examined for analogies with radiation protection measurements. Leading cases in the nuclear field are evaluated in the light of the requirements applying in case of deviations in measurements. The final section summarizes the most important findings and conclusions. (orig.)

  13. Syntactic Deviations in the Novel The Sound and the Fury

    OpenAIRE

    Pooria Alirezazadeh; Mohammad Reza Talebinezhad

    2014-01-01

    This article looks at William Faulkner’s work The Sound and the Fury. The goals are to investigate different types of syntactic deviations in the novel, and how these deviations helped the writer to create a literary work in the field of modernist literature and stream of consciousness.  To this end, the theoretical framework for linguistic deviations proposed by Leech (1969) has been chosen. Most prior researches on linguistic deviations especially syntactic deviations focused on poetic text...

  14. The role of septal surgery in management of the deviated nose.

    Science.gov (United States)

    Foda, Hossam M T

    2005-02-01

    The deviated nose represents a complex cosmetic and functional problem. Septal surgery plays a central role in the successful management of the externally deviated nose. This study included 260 patients seeking rhinoplasty to correct external nasal deviations; 75 percent of them had various degrees of nasal obstruction. Septal surgery was necessary in 232 patients (89 percent), not only to improve breathing but also to achieve a straight, symmetrical, external nose as well. A graduated surgical approach was adopted to allow correction of the dorsal and caudal deviations of the nasal septum without weakening its structural support to the dorsum or nasal tip. The approach depended on full mobilization of deviated cartilage, followed by straightening of the cartilage and its fixation in the corrected position by using bony splinting grafts through an external rhinoplasty approach. PMID:15692343

  15. Large Deviations in Fast-Slow Systems

    Science.gov (United States)

    Bouchet, Freddy; Grafke, Tobias; Tangarife, Tomás; Vanden-Eijnden, Eric

    2016-02-01

    The incidence of rare events in fast-slow systems is investigated via analysis of the large deviation principle (LDP) that characterizes the likelihood and pathway of large fluctuations of the slow variables away from their mean behavior—such fluctuations are rare on short time-scales but become ubiquitous eventually. Classical results prove that this LDP involves an Hamilton-Jacobi equation whose Hamiltonian is related to the leading eigenvalue of the generator of the fast process, and is typically non-quadratic in the momenta—in other words, the LDP for the slow variables in fast-slow systems is different in general from that of any stochastic differential equation (SDE) one would write for the slow variables alone. It is shown here that the eigenvalue problem for the Hamiltonian can be reduced to a simpler algebraic equation for this Hamiltonian for a specific class of systems in which the fast variables satisfy a linear equation whose coefficients depend nonlinearly on the slow variables, and the fast variables enter quadratically the equation for the slow variables. These results are illustrated via examples, inspired by kinetic theories of turbulent flows and plasma, in which the quasipotential characterizing the long time behavior of the system is calculated and shown again to be different from that of an SDE.

  16. Lipschitz deviation and embeddings of global attractors

    International Nuclear Information System (INIS)

    Hunt and Kaloshin (1999 Nonlinearity 12 1263–75) proved that it is possible to embed a compact subset X of a Hilbert space with upper box-counting dimension d N for any N > 2k + 1, using a linear map L whose inverse is Hölder continuous with exponent α N, dH(L(X)) ≥ min(N, dH(X)/(1 + τ(X)/2)). They also conjectured that 'many of the attractors associated with the evolution equations of mathematical physics have thickness exponent zero'. In this paper we introduce a variant of the thickness exponent, the Lipschitz deviation dev(X): we show that in both of the above results this can be used in place of the thickness exponent, and—appealing to results from the theory of approximate inertial manifolds—we prove that dev(X) = 0 for the attractors of a wide class of semilinear parabolic equations, thus providing a partial answer to the conjecture of Ott, Hunt and Kaloshin. In particular, dev(X) = 0 for the attractor of the 2D Navier–Stokes equations with forcing f in L2, while current results only guarantee that τ(X) = 0, when f in C∞

  17. The Role of Burden and Deviation in Ostracizing Others.

    Science.gov (United States)

    Wesselmann, Eric D; Wirth, James H; Pryor, John B; Reeder, Glenn D; Williams, Kipling D

    2015-01-01

    Ostracism (being excluded and ignored) is a painful experience, so why do individuals ostracize others? Previous research suggests individuals often ostracize those who are deviate, but not always. We posit that there may be two types of deviation, burdensome and non-burdensome, and the former is most likely to be ostracized. Study 1 manipulated burdensome deviation by programming a group member to perform more slowly (8 or 16 sec.) than others (4 sec.) in a virtual ball-toss game. Participants perceived slower players as more burdensome and deviate than normal speed players. Additionally, participants ostracized (gave fewer ball tosses to) the slowest player. Study 2 examined participant responses to both burdensome deviation (8- and 16-sec. players) and non-burdensome deviation (goth appearance). Participants again perceived the slower players to be burdensome and deviate, and ostracized them. They perceived the goth player to be deviate but not burdensome and did not ostracize this player. PMID:26267129

  18. ROBSCALE: RATS module to compute robust alternative to standard deviation

    OpenAIRE

    Eric Blankmeyer

    1999-01-01

    robscale.src computes a robust alternative to the standard deviation as a measure of scale (dispersion). The standard deviation is easily distorted by outliers and may therefore be quite misleading. robscale.src computes the Qn statistic of Rousseeuuw and Croux, which is very robust and also has good efficiency (relative to the standard deviation) when the data are in fact uncontaminated Gaussian random variables. (P. J. Rousseeuw and C. Croux, "Alternatives to the median absolute deviation,"...

  19. 48 CFR 2901.403 - Individual deviations from the FAR.

    Science.gov (United States)

    2010-10-01

    ... the FAR. 2901.403 Section 2901.403 Federal Acquisition Regulations System DEPARTMENT OF LABOR GENERAL DEPARTMENT OF LABOR ACQUISITION REGULATION SYSTEM Deviations From the FAR and DOLAR 2901.403 Individual deviations from the FAR. (a) The Senior Procurement Executive is authorized to approve deviations from...

  20. 14 CFR 21.609 - Approval for deviation.

    Science.gov (United States)

    2010-01-01

    ... 14 Aeronautics and Space 1 2010-01-01 2010-01-01 false Approval for deviation. 21.609 Section 21.609 Aeronautics and Space FEDERAL AVIATION ADMINISTRATION, DEPARTMENT OF TRANSPORTATION AIRCRAFT... deviation. (a) Each manufacturer who requests approval to deviate from any performance standard of a...

  1. Large deviations for Glauber dynamics of continuous gas

    Institute of Scientific and Technical Information of China (English)

    2008-01-01

    This paper is devoted to the large deviation principles of the Glauber-type dynamics of finite or infinite volume continuous particle systems.We prove that the level-2 empirical process satisfies the large deviation principles in the weak convergence topology,while it does not satisfy the large deviation principles in the T-topology.

  2. 7 CFR 400.204 - Notification of deviation from standards.

    Science.gov (United States)

    2010-01-01

    ... 7 Agriculture 6 2010-01-01 2010-01-01 false Notification of deviation from standards. 400.204... Contract-Standards for Approval § 400.204 Notification of deviation from standards. A Contractor shall... that the deviation is temporary, the Corporation may grant a temporary waiver pending compliance...

  3. A Visual Model for the Variance and Standard Deviation

    Science.gov (United States)

    Orris, J. B.

    2011-01-01

    This paper shows how the variance and standard deviation can be represented graphically by looking at each squared deviation as a graphical object--in particular, as a square. A series of displays show how the standard deviation is the size of the average square.

  4. Deviations from Fick's law in Lorentz gases

    OpenAIRE

    Lowe, C.P.; Frenkel, D.; van der Hoef, M. A.

    1997-01-01

    We have calculated the self-dynamic structure factorF(k,t) for tagged particle motion in hopping Lorentz gases. We find evidence that, even at long times, the probability distribution function for the displacement of the particles is highly non-Gaussian. At very small values of the wave vector this manifests itself as the divergence of the Burnett coefficient (the fourth moment of the distribution never approaching a value characteristic of a Gaussian). At somewhat larger wave vectors we find...

  5. Some large deviations in Kingman's coalescent

    OpenAIRE

    Depperschmidt, Andrej; Pfaffelhuber, Peter; Scheuringer, Annika

    2013-01-01

    Kingman's coalescent is a random tree that arises from classical population genetic models such as the Moran model. The individuals alive in these models correspond to the leaves in the tree and the following two laws of large numbers concerning the structure of the tree-top are well-known: (i) The (shortest) distance, denoted by $T_n$, from the tree-top to the level when there are $n$ lines in the tree satisfies $nT_n \\xrightarrow{n\\to\\infty} 2$ almost surely; (ii) At time $T_n$, the populat...

  6. A Hybrid Method with Deviational Particles for Spatial Inhomogeneous Plasma

    OpenAIRE

    Yan, Bokai

    2015-01-01

    In this work we propose a Hybrid method with Deviational Particles (HDP) for a plasma modeled by the inhomogeneous Vlasov-Poisson-Landau system. We split the distribution into a Maxwellian part evolved by a grid based fluid solver and a deviation part simulated by numerical particles. These particles, named deviational particles, could be both positive and negative. We combine the Monte Carlo method proposed in \\cite{YC15}, a Particle in Cell method and a Macro-Micro decomposition method \\cit...

  7. Clinical study of the factors affecting radioulnar deviation of the wrist joint

    Directory of Open Access Journals (Sweden)

    Kanavaros Panagiotis

    2010-01-01

    Full Text Available Abstract Background The radioulnar carpal joint is critical for hand and wrist function. Radioulnar deviation indicates distal radioulnar joint flexibility and reflects the structure and function of the carpal bones, ulna, radius and ligaments. The present study examined whether radioulnar deviation is affected by gender, manual labor, playing a musical instrument, playing sport, handedness, previous fracture or prior inflammation. The study used clinical findings based on anatomical landmarks Methods The ulnar, radial and total deviations for both left and right hands were measured in 300 subjects (157 men and 143 women of mean age 21.7 years. Measurements were made with the forearm in a fixed pronated position using a novel specially designed goniometer. The gender of each subject was recorded, and information on playing of sport, playing a musical instrument, manual labor, handedness, and history of fracture or inflammation was sought. Data were analyzed using a multifactor ANOVA test. Results No statistically significant difference (p-value > 0.05 was found between those comparing groups except the total deviation of athletes' left hand versus the total deviation of non athletes' left hand (p-value 0.041 Conclusions This study was based on clinical findings using anatomical landmarks. We found that manual workers and athletes showed greater left hand flexibility. This suggests that activities that place chronic stress on the radiocarpal joint can independently affect radioulnar deviation.

  8. 38 CFR 36.4304 - Deviations; changes of identity.

    Science.gov (United States)

    2010-07-01

    ... identity. 36.4304 Section 36.4304 Pensions, Bonuses, and Veterans' Relief DEPARTMENT OF VETERANS AFFAIRS... Deviations; changes of identity. A deviation of more than 5 percent between the estimates upon which a... change in the identity of the property upon which the original appraisal was based, will invalidate...

  9. Effect of rounding on expected value and standard deviation

    OpenAIRE

    Cedilnik, Anton; Košmelj, Katarina

    2014-01-01

    We prove that the rounded expected value of the rounded random variable differs from the expected value of the original random variable by less then 2, where is the distance between two neighbouring rounded numbers. The same conclusion holds for standard deviation. Hence, in practice the influence of rounding to expected value and standard deviation is almost negligible.

  10. Data Sets Having Integer Means and Standard Deviations.

    Science.gov (United States)

    Dudek, Frank J.

    1981-01-01

    Reviews the recent suggestion (by McGown and Spencer) that construction of tests for introductory statistics is facilitated if data sets have means and standard deviations that are integers. Maintains that it is fairly easy to devise data sets with integer means and standard deviations for larger samples. Explains advantages and describes…

  11. 基础教育评价机制的偏差及纠偏对策——兼谈高校招生录取“结构性成绩”模式%On Deviation of Evaluation System of Fundamental Education and the Coping Strategies: Reflections on the Mode of Structural Grade of University Admission

    Institute of Scientific and Technical Information of China (English)

    戴前伦

    2011-01-01

    The scientific evaluation system is of great significance of orientation for the fundamental education. However, there exist limitations like evaluating deviation and distorted achievement evaluation. The causes for these limitations lie in the mal-position of cognition of educational reality and lack of scientific evaluation. We should have the correct orientation of evaluation on educational administration management and on the entrance examination. On this basis, we can implement the mode of structural grade to strengthen the quality education and development of fundamental education.%科学的评价机制对基础教育具有重要的导向作用。但当下的基础教育存在着管理评价偏差和业绩评价扭曲的弊端。造成这些弊端的深层次原因是教育本体认知的错位和科学评价的缺位。建立科学的教育评价机制应端正教育行政管理的评价导向和升学考试的评价导向,实验、实施高校招生录取“结构性成绩”模式,以促进我国素质教育的有力推行和基础教育的蓬勃发展。

  12. The effect of polylysine on casein-kinase-2 activity is influenced by both the structure of the protein/peptide substrates and the subunit composition of the enzyme

    DEFF Research Database (Denmark)

    Meggio, F; Boldyreff, B; Marin, O;

    1992-01-01

    stimulation, moreover, is variably accounted for by changes in Vmax and/or Km, depending on the structure of the peptide substrate. Maximum stimulation with all protein/peptide substrates tested requires the presence of the beta subunit, since the recombinant alpha subunit is much less responsive than CK2...

  13. A Maximum Likelihood Approach to Least Absolute Deviation Regression

    Directory of Open Access Journals (Sweden)

    Yinbo Li

    2004-09-01

    Full Text Available Least absolute deviation (LAD regression is an important tool used in numerous applications throughout science and engineering, mainly due to the intrinsic robust characteristics of LAD. In this paper, we show that the optimization needed to solve the LAD regression problem can be viewed as a sequence of maximum likelihood estimates (MLE of location. The derived algorithm reduces to an iterative procedure where a simple coordinate transformation is applied during each iteration to direct the optimization procedure along edge lines of the cost surface, followed by an MLE of location which is executed by a weighted median operation. Requiring weighted medians only, the new algorithm can be easily modularized for hardware implementation, as opposed to most of the other existing LAD methods which require complicated operations such as matrix entry manipulations. One exception is Wesolowsky's direct descent algorithm, which among the top algorithms is also based on weighted median operations. Simulation shows that the new algorithm is superior in speed to Wesolowsky's algorithm, which is simple in structure as well. The new algorithm provides a better tradeoff solution between convergence speed and implementation complexity.

  14. Fluctuations and large deviations in non-equilibrium systems

    Indian Academy of Sciences (India)

    B Derrida

    2005-05-01

    For systems in contact with two reservoirs at different densities or with two thermostats at different temperatures, the large deviation function of the density gives a possible way of extending the notion of free energy to non-equilibrium systems. This large deviation function of the density can be calculated explicitly for exclusion models in one dimension with open boundary conditions. For these models, one can also obtain the distribution of the current of particles flowing through the system and the results lead to a simple conjecture for the large deviation function of the current of more general diffusive systems.

  15. Large Deviations for Stochastic Evolution Equations with Small Multiplicative Noise

    International Nuclear Information System (INIS)

    The Freidlin-Wentzell large deviation principle is established for the distributions of stochastic evolution equations with general monotone drift and small multiplicative noise. As examples, the main results are applied to derive the large deviation principle for different types of SPDE such as stochastic reaction-diffusion equations, stochastic porous media equations and fast diffusion equations, and the stochastic p-Laplace equation in Hilbert space. The weak convergence approach is employed in the proof to establish the Laplace principle, which is equivalent to the large deviation principle in our framework.

  16. Large deviations for two scale chemical kinetic processes

    CERN Document Server

    Li, Tiejun

    2015-01-01

    We formulate the large deviations for a class of two scale chemical kinetic processes motivated from biological applications. The result is successfully applied to treat a genetic switching model with positive feedbacks. The corresponding Hamiltonian is convex with respect to the momentum variable as a by-product of the large deviation theory. This property ensures its superiority in the rare event simulations compared with the result obtained by formal WKB asymptotics. The result is of general interest to understand the large deviations for multiscale problems.

  17. New g-2 measurement deviates further from Standard Model

    CERN Document Server

    2004-01-01

    "The latest result from an international collaboration of scientists investigating how the spin of a muon is affected as this type of subatomic particle moves through a magnetic field deviates further than previous measurements from theoretical predictions" (1 page).

  18. A Note on a Normal Distribution with Varying Standard Deviation

    Directory of Open Access Journals (Sweden)

    Mahabaleshwara Holla

    1965-01-01

    Full Text Available A normal distribution with varying standard deviation has been considered in this note. Statistical properties of the distribution and the estimation of the parameters involved therein are also discussed.

  19. Spin-geodesic deviations in the Schwarzschild spacetime

    CERN Document Server

    Bini, Donato; Jantzen, Robert T

    2014-01-01

    The deviation of the path of a spinning particle from a circular geodesic in the Schwarzschild spacetime is studied by an extension of the idea of geodesic deviation. Within the Mathisson-Papapetrou-Dixon model and assuming the spin parameter to be sufficiently small so that it makes sense to linearize the equations of motion in the spin variables as well as in the geodesic deviation, the spin-curvature force adds an additional driving term to the second order system of linear ordinary differential equations satisfied by nearby geodesics. Choosing initial conditions for geodesic motion leads to solutions for which the deviations are entirely due to the spin-curvature force, and one finds that the spinning particle position for a given fixed total spin oscillates roughly within an ellipse in the plane perpendicular to the motion, while the azimuthal motion undergoes similar oscillations plus an additional secular drift which varies with spin orientation.

  20. A Hybrid Method with Deviational Particles for Spatial Inhomogeneous Plasma

    CERN Document Server

    Yan, Bokai

    2015-01-01

    In this work we propose a Hybrid method with Deviational Particles (HDP) for a plasma modeled by the inhomogeneous Vlasov-Poisson-Landau system. We split the distribution into a Maxwellian part evolved by a grid based fluid solver and a deviation part simulated by numerical particles. These particles, named deviational particles, could be both positive and negative. We combine the Monte Carlo method proposed in \\cite{YC15}, a Particle in Cell method and a Macro-Micro decomposition method \\cite{BLM08} to design an efficient hybrid method. Furthermore, coarse particles are employed to accelerate the simulation. A particle resampling technique on both deviational particles and coarse particles is also investigated and improved. The efficiency is significantly improved compared to a PIC-MCC method, especially near the fluid regime.

  1. Quenched moderate deviations principle for random walk in random environment

    Institute of Scientific and Technical Information of China (English)

    2010-01-01

    We derive a quenched moderate deviations principle for the one-dimensional nearest random walk in random environment,where the environment is assumed to be stationary and ergodic.The approach is based on hitting time decomposition.

  2. A hybrid method with deviational particles for spatial inhomogeneous plasma

    Science.gov (United States)

    Yan, Bokai

    2016-03-01

    In this work we propose a Hybrid method with Deviational Particles (HDP) for a plasma modeled by the inhomogeneous Vlasov-Poisson-Landau system. We split the distribution into a Maxwellian part evolved by a grid based fluid solver and a deviation part simulated by numerical particles. These particles, named deviational particles, could be both positive and negative. We combine the Monte Carlo method proposed in [31], a Particle in Cell method and a Macro-Micro decomposition method [3] to design an efficient hybrid method. Furthermore, coarse particles are employed to accelerate the simulation. A particle resampling technique on both deviational particles and coarse particles is also investigated and improved. This method is applicable in all regimes and significantly more efficient compared to a PIC-DSMC method near the fluid regime.

  3. A Note on Standard Deviation and Standard Error

    Science.gov (United States)

    Hassani, Hossein; Ghodsi, Mansoureh; Howell, Gareth

    2010-01-01

    Many students confuse the standard deviation and standard error of the mean and are unsure which, if either, to use in presenting data. In this article, we endeavour to address these questions and cover some related ambiguities about these quantities.

  4. Robust estimation of standard deviation using ordered samples

    International Nuclear Information System (INIS)

    A robust estimate for the standard deviation of a normal distribution is developed. We choose the contaminated normal distribution as our outlier model and demonstrate the method with two examples representing data from international interlaboratory experiments

  5. 9 CFR 381.308 - Deviations in processing.

    Science.gov (United States)

    2010-01-01

    ...) must be handled according to: (1)(i) A HACCP plan for canned product that addresses hazards associated... (d) of this section. (c) (d) Procedures for handling process deviations where the HACCP plan...

  6. Deviation of the statistical fluctuation in heterogeneous anomalous diffusion

    CERN Document Server

    Itto, Yuichi

    2016-01-01

    The exponent of anomalous diffusion of virus in cytoplasm of a living cell is experimentally known to fluctuate depending on localized areas of the cytoplasm, indicating heterogeneity of diffusion. In a recent paper (Itto, 2012), a maximum-entropy-principle approach has been developed in order to propose an Ansatz for the statistical distribution of such exponent fluctuations. Based on this approach, here the deviation of the statistical distribution of the fluctuations from the proposed one is studied from the viewpoint of Einstein's theory of fluctuations (of the thermodynamic quantities). This may present a step toward understanding the statistical property of the deviation. It is shown in a certain class of small deviations that the deviation obeys the multivariate Gaussian distribution.

  7. Large Deviations: An Introduction to 2007 Abel Prize

    Indian Academy of Sciences (India)

    S Ramasubramanian

    2008-05-01

    2007 Abel prize has been awarded to S R S Varadhan for creating a unified theory of large deviations. We attempt to give a flavour of this branch of probability theory, highlighting the role of Varadhan.

  8. Analysis of principle deviation of subpixel Zernike moments operator

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    In original Zernike moments subpixel edge operator, ideal step edge model is chosen for calculating four parameters of a pixel point, and therefore principle deviation is caused by edge model. In order to discuss the effect of principle deviation on edge location, sampled edge model is chosen for calculating edge parameters, principle deviation of edge translation l is derived based on Zernike moments edge detection theory, and modified formula of l is given for Zernike moments operator with masks of 5×5 size. Both theory analysis and testing result demonstrate that principle deviation is zero when edge translation l is limited in central pixel of a sampled window. In another case, the modification of l should be considered, which results in edge location accuracy of non-subpixel level for this subpixel edge operator.

  9. Deviations from the critical state model observed in niobium

    OpenAIRE

    Gijsbertse, E.A.; Klundert, van de, L.J.M.

    1980-01-01

    The values of the critical current density of niobium slabs, measured with the help of trapezoidal ac magnetic fields are not in agreement with the critical state model. Extensions of this model are suggested to explain the observed deviation.

  10. Large deviation theory to model systems under an external feedback

    OpenAIRE

    Gagliardi, Alessio; Pecchia, Alessandro; Di Carlo, Aldo

    2016-01-01

    In this paper we address the problem of systems under an external feedback. This is performed using a large deviation approach and rate distortion from information theory. In particular we define a lower boundary for the maximum entropy reduction that can be obtained using a feedback apparatus with a well defined accuracy in terms of measurement of the state of the system. The large deviation approach allows also to define a new set of potentials, including information, which similarly to mor...

  11. An Upper Bound of Large Deviations for Capacities

    OpenAIRE

    Xiaomin Cao

    2014-01-01

    Up to now, most of the academic researches about the large deviation and risk theory are under the framework of the classical linear expectations. But motivated by problems of model uncertainties in statistics, measures of risk, and superhedging in finance, sublinear expectations are extensively studied. In this paper, we obtain a type of large deviation principle under the sublinear expectation. This result is a new expression of the Gärtner-Ellis theorem under the sublinear expectations whi...

  12. Large Deviation Theory for a Homogenized and "Corrected" Elliptic ODE

    OpenAIRE

    Bal, Guillaume; Ghanem, Roger; Langmore, Ian

    2010-01-01

    We study a one-dimensional elliptic problem with highly oscillatory random diffusion coefficient. We derive a homogenized solution and a so-called Gaussian corrector. We also prove a "pointwise" large deviation principle (LDP) for the full solution and approximate this LDP with a more tractable form. These results allow one to access the limits of Gaussian correctors. In general, the corrector does not capture the large deviation behavior. Applications to uncertainty quantification are consid...

  13. Comparison of estimators of standard deviation for hydrologic time series.

    Science.gov (United States)

    Tasker, Gary D.; Gilroy, E.J.

    1982-01-01

    Unbiasing factors as a function of serial correlation, rho, and sample size, n for the sample standard deviation of a lag one autoregressive model were generated by random number simulation. Monte Carlo experiments were used to compare the performance of several alternative methods for estimating the standard deviation sigma of a lag one autoregressive model in terms of bias, root mean square error, probability of underestimation, and expected opportunity design loss. -from Authors

  14. The possible advantages of the mean absolute deviation 'effect' size.

    OpenAIRE

    Gorard, S.

    2013-01-01

    A range of ‘effect’ sizes already exists, for presenting a relatively easy to interpret estimate of a difference or change between two sets of observations. All are based on use of the standard deviation of the observations, involving squaring and then square-rooting, which makes results hard to interpret, hard to teach and may distort extreme scores. An effect size based on the simpler mean absolute deviation overcomes these issues to some extent, while being at least as efficient and...

  15. Defection of Traditional Standard Deviation Scaling of Capital Asset Returns

    OpenAIRE

    Vladimír Gazda; Karel Koøený; Tomáš Výrost

    2004-01-01

    In this paper, we investigate the adequacy of scaling, a method frequently used in estimation of standard deviation of stock returns. Scaling is based on the assumption that standard deviation is proportional to the square root of the length of the time interval of the sample (for example daily, monthly or annual data). We analyze the cases when this assumption is justified, and emphasize possible weaknesses of this procedure. As an example, we test the assumptions of scaling on three market ...

  16. Deviations From Newton's Law in Supersymmetric Large Extra Dimensions

    OpenAIRE

    Callin, P.; Burgess, C. P.

    2005-01-01

    Deviations from Newton's Inverse-Squared Law at the micron length scale are smoking-gun signals for models containing Supersymmetric Large Extra Dimensions (SLEDs), which have been proposed as approaches for resolving the Cosmological Constant Problem. Just like their non-supersymmetric counterparts, SLED models predict gravity to deviate from the inverse-square law because of the advent of new dimensions at sub-millimeter scales. However SLED models differ from their non-supersymmetric count...

  17. Moderate deviations for the determinant of Wigner matrices

    OpenAIRE

    Döring, Hanna; Eichelsbacher, Peter

    2013-01-01

    We establish a moderate deviations principle (MDP) for the log-determinant $\\log | \\det (M_n) |$ of a Wigner matrix $M_n$ matching four moments with either the GUE or GOE ensemble. Further we establish Cram\\'er--type moderate deviations and Berry-Esseen bounds for the log-determinant for the GUE and GOE ensembles as well as for non-symmetric and non-Hermitian Gaussian random matrices (Ginibre ensembles), respectively.

  18. Deviations from Vegard’s law in ternary III-V alloys

    KAUST Repository

    Murphy, S. T.

    2010-08-03

    Vegard’s law states that, at a constant temperature, the volume of an alloy can be determined from a linear interpolation of its constituent’s volumes. Deviations from this description occur such that volumes are both greater and smaller than the linear relationship would predict. Here we use special quasirandom structures and density functional theory to investigate such deviations for MxN1−xAs ternary alloys, where M and N are group III species (B, Al, Ga, and In). Our simulations predict a tendency, with the exception of AlxGa1−xAs, for the volume of the ternary alloys to be smaller than that determined from the linear interpolation of the volumes of the MAs and BAs binary alloys. Importantly, we establish a simple relationship linking the relative size of the group III atoms in the alloy and the predicted magnitude of the deviation from Vegard’s law.

  19. The Relationship Among the Standard Deviation of a Dataset and the Standard Deviation and Average Two Part of This Set

    OpenAIRE

    de Morais, Jose Fausto

    2012-01-01

    Meta-analysis involves combining summary information for related but independent studies. It uses different relationship to combine position measure as well as dispersion measures. The objective of this study is to discuss a relationship among the standard deviation of a data set and the standard deviation and mean of two part of this set. The problem was proposed in a systematic review with meta-analysis that combined two studies with missing data.

  20. Characterization of CK2 holoenzyme variants with regard to crystallization

    DEFF Research Database (Denmark)

    Guerra, B; Niefind, K; Ermakowa, I;

    2001-01-01

    efforts severely. One of the approaches chosen was the production of a chimeric holoenzyme made up from a human regulatory subunit and a catalytic subunit from Z. mays. The plant catalytic subunit, in contrast to the human counterpart is very stable and does not undergo this kind of degradation. The...

  1. Setup deviations in wedged pair irradiation of parotid gland and tonsillar tumors, measured with an electronic portal imaging device

    International Nuclear Information System (INIS)

    The first aim of this study was to quantify estimated translational setup deviations of patients treated with a wedged pair of oblique beams for parotid gland and tonsillar tumors, using portal imaging. The second aim was to design an off-line setup verification procedure, to improve the setup accuracy, if necessary. Thirty-one patients were treated with two conformal fields (anterior-oblique and posterior-oblique). The patients were immobilized with a head cast. For the last 10 patients, the rigidity of the cast was improved while, in addition, wax molds with metal markers were placed into the outer ear for image correlation. Portal images were acquired about weekly. Setup deviations were analyzed, using anatomical structures and, when available, metal markers for image matching. The consistency of the deviations was determined by the correlation between deviations in the cranio-caudal direction, as measured from both beams. When the deviations were consistent, the translational setup deviation during a treatment session could be described by a three-dimensional (3D) vector. A setup verification procedure was designed using a computer simulation. The statistics of the 3D setup deviations were used as input. The output consisted of the resulting setup accuracy and workload (i.e., the number of setup corrections and portal images). Using the anatomical structures for image correlation, the deviations in the cranio-caudal direction were not correlated, either for the old or the improved cast. However, by using the metal markers, the deviations were correlated and a 3D analysis could be performed. The standard deviations, averaged over the three directions, were equal to 1.8 and 1.4 mm for the distribution of systematic and random deviations, respectively. Application of a setup verification procedure, with 0.7 corrections on the average per patient, could potentially reduce the percentage of 3D systematic deviations larger than 4 mm from 30 to 2%. It can be concluded

  2. Deviations from Newton's law in supersymmetric large extra dimensions

    International Nuclear Information System (INIS)

    Deviations from Newton's inverse-squared law at the micron length scale are smoking-gun signals for models containing supersymmetric large extra dimensions (SLEDs), which have been proposed as approaches for resolving the cosmological constant problem. Just like their non-supersymmetric counterparts, SLED models predict gravity to deviate from the inverse-square law because of the advent of new dimensions at sub-millimeter scales. However SLED models differ from their non-supersymmetric counterparts in three important ways: (i) the size of the extra dimensions is fixed by the observed value of the dark energy density, making it impossible to shorten the range over which new deviations from Newton's law must be seen; (ii) supersymmetry predicts there to be more fields in the extra dimensions than just gravity, implying different types of couplings to matter and the possibility of repulsive as well as attractive interactions; and (iii) the same mechanism which is purported to keep the cosmological constant naturally small also keeps the extra-dimensional moduli effectively massless, leading to deviations from general relativity in the far infrared of the scalar-tensor form. We here explore the deviations from Newton's law which are predicted over micron distances, and show the ways in which they differ and resemble those in the non-supersymmetric case

  3. Follicle and endocrine dynamics during experimental follicle deviation in mares.

    Science.gov (United States)

    Ginther, O J; Meira, C; Beg, M A; Bergfelt, D R

    2002-09-01

    Deviation during a follicular wave in mares begins when the largest follicle (F1) reaches a mean diameter of 22.5 mm and is characterized by continued growth of F1 to become the dominant follicle and regression of F2 to become the largest subordinate follicle. In the present study, F1 was ablated at the expected beginning of deviation (Hour 0) to provide a reference point for characterizing the intrafollicular changes preceding experimental deviation between F2 and F3. Diameters and concentrations of follicular fluid factors in F2 and F3 were determined in F1-ablated mares at Hours 0, 12, 24, 48, or 72 (n = 8 mares/group). Circulating FSH concentrations were greater (P 0.1) to the diameter of F1 and FSH concentration at Hour 0, respectively. A differential change between F2 and F3 was not detected in follicular fluid concentrations of estradiol, inhibin-A, and activin-A by the beginning of experimental deviation. However, estradiol was higher in F2 at Hours 0 and 12 and inhibin-A was higher in F2 throughout the experiment, and both factors could have been involved in experimental deviation. Free insulin-like growth factor-1 (IGF-1) increased (P < 0.05) in F2 beginning at Hour 12 and was higher (P < 0.05) in F2 than in F3 by the beginning of experimental deviation. Temporally, this result indicated that intrafollicular IGF-1 was involved in conversion of F2 from a destined subordinate follicle to a dominant follicle. PMID:12193395

  4. Large Deviations for Multiscale Diffusions via Weak Convergence Methods

    CERN Document Server

    Dupuis, Paul

    2010-01-01

    We study the large deviations principle for locally periodic stochastic differential equations with small noise and fast oscillating coefficients. There are three possible regimes depending on how fast the intensity of the noise goes to zero relative to the homogenization parameter. We use weak convergence methods which provide convenient representations for the action functional for all three regimes. Along the way we study weak limits of related controlled SDEs with fast oscillating coefficients and derive, in some cases, a control that nearly achieves the large deviations lower bound at the prelimit level. This control is useful for designing efficient importance sampling schemes for multiscale diffusions driven by small noise.

  5. A large deviation principle for join the shortest queue

    OpenAIRE

    Puhalskii, Anatolii A.; Vladimirov, Alexander A.

    2005-01-01

    We consider a join-the-shortest-queue model which is as follows. There are $K$ single FIFO servers and $M$ arrival processes. The customers from a given arrival process can be served only by servers from a certain subset of all servers. The actual destination is the server with the smallest weighted queue length. The arrival processes are assumed to obey a large deviation principle while the service is exponential. A large deviation principle is established for the queue-length process. The a...

  6. Understanding positive and negative deviations in polarity of ionic liquid mixtures by pseudo-solvent approach.

    Science.gov (United States)

    Beniwal, Vijay; Kumar, Anil

    2016-08-24

    Physico-chemical properties of liquid mixtures in general display large deviations from linear behaviour, arising out of complex specific and non-specific intermolecular interactions. The polarity of liquid mixtures displaying large positive and negative deviations can be minimized and linear mixing can be achieved in liquids using a pseudo-solvent methodology. The work described herein is designed to investigate the influence of different physical parameters on the linear pseudo-solvent composition in ionic liquid mixtures. For this purpose, we have determined the deviations from linearity, ΔE values (defined as given by ) for binary mixtures of a variety of ionic liquids, including two molecular solvents, DMSO and formamide. Firstly, the investigations were carried out in three 1-butyl-3-methylimidazolium cation based aprotic ionic liquids and the roles of anionic structure and hydrogen bond acceptor basicities (β values) of the ionic liquids were determined. The influence of the cationic structure, i.e., the hydrogen bond donor acidity (α values) and non-associative nature of the ionic liquids, was determined using C2-methylated analogs, 1-butyl-2,3-dimethylimidazolium cation based ionic liquids. The role of the protic nature of ionic liquids was studied in two protic ionic liquids, viz., 1-methylimidazolium formate and 1-methylimidazolium acetate. The effects of the temperature, pseudo-solvent structure and solvatochromic probe structure on the ΔE values were also explored. PMID:27523572

  7. Estimation of Transition Probabilities Using Median Absolute Deviations

    OpenAIRE

    Kim, C. S.; Schaible, Glenn D.

    1988-01-01

    The probability-constrained minimum absolute deviations (MAD) estimator appears to be superior to the probability-constrained quadratic programming estimator in estimating transition probabilities with limited aggregate time series data Futhermore, one can reduce the number of columns in the probability-constrained MAD simplex tableau by adopting the median property

  8. Generalized deviation equations and entanglement first law for Rotating BTZ

    CERN Document Server

    Ghosh, Avirup

    2016-01-01

    The change in Holographic entanglement entropy (HEE) for small fluctuations about pure AdS is given by a perturbative expansion of the area functional in terms of the change in the bulk metric and the embedded extremal surface. However it is known that change in the embedding appear at second order or higher. In this paper we show that these changes in the embedding can be systematically calculated in the 2+1 dimensional case by accounting for the deviation of the spacelike geodesics between a spacetime and perturbations over it. Here we consider rotating BTZ as perturbation over $AdS_3$ and study deviations of spacelike geodesics in them. We argue that these deviations arise naturally as solutions of a "generalized geodesic deviation equation". Using this we perturbatively calculate the changes in HEE upto second order, for rotating BTZ. This expression matches with the small system size expansion of the change in HEE obtained by HRT (Hubeny, Rangamani and Takayanagi) proposal for rotating BTZ. We also give ...

  9. Large Deviation Analysis of Rapid Onset of Rain Showers

    OpenAIRE

    Wilkinson, Michael

    2016-01-01

    Rainfall from ice-free cumulus clouds requires collisions of large numbers of microscopic droplets to create every raindrop. The onset of rain showers can be surprisingly rapid, much faster than the mean time required for a single collision. Large-deviation theory is used to explain this observation.

  10. 49 CFR 110.120 - Deviation from this part.

    Science.gov (United States)

    2010-10-01

    ... 49 Transportation 2 2010-10-01 2010-10-01 false Deviation from this part. 110.120 Section 110.120 Transportation Other Regulations Relating to Transportation PIPELINE AND HAZARDOUS MATERIALS SAFETY ADMINISTRATION, DEPARTMENT OF TRANSPORTATION HAZARDOUS MATERIALS AND OIL TRANSPORTATION HAZARDOUS MATERIALS PUBLIC SECTOR TRAINING AND PLANNING...

  11. Large Deviation Analysis of Rapid Onset of Rain Showers.

    Science.gov (United States)

    Wilkinson, Michael

    2016-01-01

    Rainfall from ice-free cumulus clouds requires collisions of large numbers of microscopic droplets to create every raindrop. The onset of rain showers can be surprisingly rapid, much faster than the mean time required for a single collision. Large-deviation theory is used to explain this observation. PMID:26799046

  12. Large systematic deviations in the haptic perception of parallelity

    NARCIS (Netherlands)

    Kappers, A.M.L.

    1999-01-01

    Recently, Kappers and Koenderink (1999 Perception 28 781-795) showed that what subjects haptically perceive as parallel often deviates greatly from what is actually physically parallel. In their experiment, subjects had to rotate a test bar in such a way that it felt as though it was parallel to a r

  13. Strongly Cohen-Macaulay ideals of small second analytic deviation

    OpenAIRE

    Corso, Alberto; Polini, Claudia

    2002-01-01

    We characterize the strongly Cohen-Macaulay ideals of second analytic deviation one in terms of depth properties of the powers of the ideal in the `standard range.' This provides an explanation of the behaviour of certain ideals that have appeared in the literature.

  14. Robust Confidence Interval for a Ratio of Standard Deviations

    Science.gov (United States)

    Bonett, Douglas G.

    2006-01-01

    Comparing variability of test scores across alternate forms, test conditions, or subpopulations is a fundamental problem in psychometrics. A confidence interval for a ratio of standard deviations is proposed that performs as well as the classic method with normal distributions and performs dramatically better with nonnormal distributions. A simple…

  15. The one-shot deviation principle for sequential rationality

    DEFF Research Database (Denmark)

    Hendon, Ebbe; Whitta-Jacobsen, Hans Jørgen; Sloth, Birgitte

    1996-01-01

    We present a decentralization result which is useful for practical and theoretical work with sequential equilibrium, perfect Bayesian equilibrium, and related equilibrium concepts for extensive form games. A weak consistency condition is sufficient to obtain an analogy to the well known One-Stage......-Stage-Deviation Principle for subgame perfect equilibrium...

  16. Deviations in the Accumulated Dose For Archaeological Dating

    Science.gov (United States)

    Farias, T. M. B.; Gennari, R. F.; Santana, J. C. C.; Calarge, F.

    The archaeological dating by thermoluminescence (TL) method is obtained through the determination of the accumulative dose and the annual. In this work, an evaluation of two factors which can cause deviations in the accumulative dose in archaeological dating of sediments by TL method was carried out.

  17. Developmental aspects of the deviated nose -a verwoerd study-

    OpenAIRE

    Grewal, DS; Irani, Dinaz K

    1999-01-01

    In childhood functional, infectious, aesthetic and social problems can result from a deviated septum and nose, further research on the anatomic development, the mechanism of growth, and the process of wound healing is needed to develop surgical techniques that not only correct the present problem but also ensure the further normal growth of the septum and nose.

  18. Large deviations for Markov chains in the positive quadrant

    International Nuclear Information System (INIS)

    The paper deals with so-called N-partially space-homogeneous time-homogeneous Markov chains X(y,n), n=0,1,2,..., X(y,0)=y, in the positive quadrant. These Markov chains are characterized by the following property of the transition probabilities P(y,A)=P(X(y,1) element of A): for some N≥0 the measure P(y,dx) depends only on x2, y2, and x1-y1 in the domain x1>N, y1>N, and only on x1, y1, and x2-y2 in the domain x2>N, y2>N. For such chains the asymptotic behaviour is found for a fixed set B as s→∞, |x|→∞, and n→∞. Some other conditions on the growth of parameters are also considered, for example, |x-y|→∞, |y|→∞. A study is made of the structure of the most probable trajectories, which give the main contribution to this asymptotics, and a number of other results pertaining to the topic are established. Similar results are obtained for the narrower class of 0-partially homogeneous ergodic chains under less restrictive moment conditions on the transition probabilities P(y,dx). Moreover, exact asymptotic expressions for the probabilities P(X(0,n) element of x+B) are found for 0-partially homogeneous ergodic chains under some additional conditions. The interest in partially homogeneous Markov chains in positive octants is due to the mathematical aspects (new and interesting problems arise in the framework of general large deviation theory) as well as applied issues, for such chains prove to be quite accurate mathematical models for numerous basic types of queueing and communication networks such as the widely known Jackson networks, polling systems, or communication networks associated with the ALOHA algorithm. There is a vast literature dealing with the analysis of these objects. The present paper is an attempt to find the extent to which an asymptotic analysis is possible for Markov chains of this type in their general form without using any special properties of the specific applications mentioned above. It turns out that such an analysis is quite

  19. Importance of borehole deviation surveys for monitoring of hydraulic fracturing treatments

    Czech Academy of Sciences Publication Activity Database

    Bulant, P.; Eisner, L.; Pšenčík, Ivan; Le Calvez, J. H.

    2007-01-01

    Roč. 55, č. 6 (2007), s. 891-899. ISSN 0016-8025 Grant ostatní: GA ČR(CZ) GA205/07/0032; EC(XE) MTKI-CT-2004-517242 Institutional research plan: CEZ:AV0Z30120515 Source of funding: R - rámcový projekt EK Keywords : hydraulic fracture * borehole deviation * seismic rays Subject RIV: DC - Siesmology, Volcanology, Earth Structure Impact factor: 0.731, year: 2007

  20. Exact Moderate and Large Deviations for Linear Processes

    CERN Document Server

    Peligrada, Magda; Zhong, Yunda; Wu, Wei Biao

    2011-01-01

    Large and moderate deviation probabilities play an important role in many applied areas, such as insurance and risk analysis. This paper studies the exact moderate and large deviation asymptotics in non-logarithmic form for linear processes with independent innovations. The linear processes we analyze are general and therefore they include the long memory case. We give an asymptotic representation for probability of the tail of the normalized sums and specify the zones in which it can be approximated either by a standard normal distribution or by the marginal distribution of the innovation process. The results are then applied to regression estimates, moving averages, fractionally integrated processes, linear processes with regularly varying exponents and functions of linear processes. We also consider the computation of value at risk and expected shortfall, fundamental quantities in risk theory and finance.

  1. Deviation from the superparamagnetic behaviour of fine-particle systems

    CERN Document Server

    Malaescu, I

    2000-01-01

    Studies concerning superparamagnetic behaviour of fine magnetic particle systems were performed using static and radiofrequency measurements, in the range 1-60 MHz. The samples were: a ferrofluid with magnetite particles dispersed in kerosene (sample A), magnetite powder (sample B) and the same magnetite powder dispersed in a polymer (sample C). Radiofrequency measurements indicated a maximum in the imaginary part of the complex magnetic susceptibility, for each of the samples, at frequencies with the magnitude order of tens of MHz, the origin of which was assigned to Neel-type relaxation processes. The static measurements showed a Langevin-type dependence of magnetisation M and of susceptibility chi, on the magnetic field for sample A. For samples B and C deviations from this type of dependence were found. These deviations were analysed qualitatively and explained in terms of the interparticle interactions, dispersion medium influence and surface effects.

  2. Endogenous agenda formation processes with the one-deviation property

    OpenAIRE

    Vartiainen, Hannu

    2014-01-01

    We study collective choice via an endogenous agenda setting process. At each stage, a status quo is implemented unless it is replaced by a majority (winning coalition) with a new status quo outcome. The process continues until the prevailing status quo is no longer challenged. We impose a one-time deviation restriction on the feasible policy processes, reflecting farsightedness of voters. The key feature of the solution is history dependence. The existence of the solution is proven by iterati...

  3. Large deviations of inverse processes with nonlinear scalings

    OpenAIRE

    Duffield, N. G.; Whitt, W.

    1998-01-01

    We show, under regularity conditions, that a nonnegative nondecreasing real-valued stochastic process satisfies a large deviation principle (LDP) with nonlinear scaling if and only if its inverse process does. We also determine how the associated scaling and rate functions must be related. A key condition for the LDP equivalence is for the composition of two of the scaling functions to be regularly varying with nonnegative index. We apply the LDP equivalence to develop equiv...

  4. Trends and Deviations in Federal, State and Local Finance

    OpenAIRE

    Jeffrey S. Zax

    1986-01-01

    This paper contains a descriptive analysis o+ real per capita annual revenues, expenditures, deficits, debt levels and capital expenditures for federal, state and local government finance in the United States for the rears 1952-83. It summarizes each time series as a deterministic trend and an ARIM characterization of the deviations around trend. These summaries demonstrate that civilian capital outlays are falling at an accelerating pace in ail levels of government; federal government expend...

  5. Solar Radiation Pressure and Deviations from Keplerian Orbits

    OpenAIRE

    Kezerashvili, Roman Ya.; Vazquez-Poritz, Justin F.

    2009-01-01

    Newtonian gravity and general relativity give exactly the same expression for the period of an object in circular orbit around a static central mass. However, when the effects of the curvature of spacetime and solar radiation pressure are considered simultaneously for a solar sail propelled satellite, there is a deviation from Kepler's third law. It is shown that solar radiation pressure affects the period of this satellite in two ways: by effectively decreasing the solar mass, thereby increa...

  6. Detection of Deviations in Mobile Applications Network Behavior

    OpenAIRE

    Chekina, L.; Mimran, D.; Rokach, L.; Elovici, Y.; Shapira, B.

    2012-01-01

    In this paper a novel system for detecting meaningful deviations in a mobile application's network behavior is proposed. The main goal of the proposed system is to protect mobile device users and cellular infrastructure companies from malicious applications. The new system is capable of: (1) identifying malicious attacks or masquerading applications installed on a mobile device, and (2) identifying republishing of popular applications injected with a malicious code. The detection is performed...

  7. New Rotary Engine Designs by Deviation Function Method

    OpenAIRE

    Warren, Sarah

    2012-01-01

    Conventional rotary engine designs are based on an epitrochoidal housing bore that is found by the path of the point at the rotor profile's apex. To seal the engine, the rotor apexes are replaced by spring-loaded apex seals that slide along the housing bore during rotation. The conventional designs are limited to the point-based epitrochoid housing profiles and cannot incorporate the profile of the apex seal. This dissertation presents the complete theory and algorithm of the deviation functi...

  8. Diagram of measurement series elements deviation from local linear approximations

    OpenAIRE

    Lande, D. V.; Snarskii, A. A.

    2009-01-01

    Method for detection and visualization of trends, periodicities, local peculiarities in measurement series (dL-method) based on DFA technology (Detrended fluctuation analysis) is proposed. The essence of the method lies in reflecting the values of absolute deviation of measurement accumulation series points from the respective values of linear approximation. It is shown that dL-method in some cases allows better determination of local peculiarities than wavelet-analysis. Easy-to-realize appro...

  9. Predictive visual tracking based on least absolute deviation estimation

    Institute of Scientific and Technical Information of China (English)

    Rongtai Cai; Yanjie Wang

    2008-01-01

    To cope with the occlusion and intersection between targets and the environment, location prediction is employed in the visual tracking system. Target trace is fitted by sliding subsection polynomials based on least absolute deviation (LAD) estimation, and the future location of target is predicted with the fitted trace. Experiment results show that the proposed location prediction algorithm based on LAD estimation has significant robustness advantages over least square (LS) estimation, and it is more effective than LS-based methods in visual tracking.

  10. Large deviations of ergodic counting processes: a statistical mechanics approach

    OpenAIRE

    Budini, Adrian A.

    2011-01-01

    The large-deviation method allows to characterize an ergodic counting process in terms of a thermodynamic frame where a free energy function determines the asymptotic non-stationary statistical properties of its fluctuations. Here, we study this formalism through a statistical mechanics approach, i.e., with an auxiliary counting process that maximizes an entropy function associated to the thermodynamic potential. We show that the realizations of this auxiliary process can be obtained after ap...

  11. Semiparametric Bernstein–von Mises for the error standard deviation

    OpenAIRE

    Jonge, de, B.; Zanten, van, M.

    2013-01-01

    We study Bayes procedures for nonparametric regression problems with Gaussian errors, giving conditions under which a Bernstein–von Mises result holds for the marginal posterior distribution of the error standard deviation. We apply our general results to show that a single Bayes procedure using a hierarchical spline-based prior on the regression function and an independent prior on the error variance, can simultaneously achieve adaptive, rate-optimal estimation of a smooth, multivariate regr...

  12. Deviation of Yukawa Coupling in Gauge-Higgs Unification

    OpenAIRE

    Adachi, Yuki; Maru, Nobuhito

    2015-01-01

    We study the deviation of yukawa coupling in the gauge-Higgs unification scenario from the Standard Model one. Taking into account the brane mass terms necessary for generating the flavor mixing and removing the exotic massless fermions, we derive an analytic formula determining the KK mass spectrum and yukawa coupling. Applying the obtained results to the tau and bottom yukawa couplings, we numerically calculate the ratio of the yukawa couplings in the gauge-Higgs unification and in the Stan...

  13. Semiparametric Bernstein-von Mises for the error standard deviation

    OpenAIRE

    Jonge, de, B.; Zanten, van, M.

    2013-01-01

    We study Bayes procedures for nonparametric regression problems with Gaussian errors, giving conditions under which a Bernstein-von Mises result holds for the marginal posterior distribution of the error standard deviation. We apply our general results to show that a single Bayes procedure using a hierarchical spline-based prior on the regression function and an independent prior on the error variance, can simultaneously achieve adaptive, rate-optimal estimation of a smooth, multivariate regr...

  14. Are there deviations from Newton's law of gravitation?

    International Nuclear Information System (INIS)

    A survey is given about the search for experimental references of deviations from Newton's law of gravitation postulating an universal equivalence between inertial and heavy mass. Classical and modern experiments, geophysical measurements, measurements on elementary particles as well as theoretical models and astronomical observations are reported and the accuracy is estimated. Specially the results of the Eoetvoes experiment giving the impulse for such a search are discussed

  15. Gibbs-non-Gibbs transitions via large deviations: computable examples

    OpenAIRE

    2012-01-01

    We give new and explicitly computable examples of Gibbs-non-Gibbs transitions of mean-field type, using the large deviation approach introduced in [4]. These examples include Brownian motion with small variance and related diffusion processes, such as the Ornstein-Uhlenbeck process, as well as birth and death processes. We show for a large class of initial measures and diffusive dynamics both short-time conservation of Gibbsianness and dynamical Gibbs-non-Gibbs transitions.

  16. Quantifying prosthetic gait deviation using simple outcome measures

    Science.gov (United States)

    Kark, Lauren; Odell, Ross; McIntosh, Andrew S; Simmons, Anne

    2016-01-01

    AIM: To develop a subset of simple outcome measures to quantify prosthetic gait deviation without needing three-dimensional gait analysis (3DGA). METHODS: Eight unilateral, transfemoral amputees and 12 unilateral, transtibial amputees were recruited. Twenty-eight able-bodied controls were recruited. All participants underwent 3DGA, the timed-up-and-go test and the six-minute walk test (6MWT). The lower-limb amputees also completed the Prosthesis Evaluation Questionnaire. Results from 3DGA were summarised using the gait deviation index (GDI), which was subsequently regressed, using stepwise regression, against the other measures. RESULTS: Step-length (SL), self-selected walking speed (SSWS) and the distance walked during the 6MWT (6MWD) were significantly correlated with GDI. The 6MWD was the strongest, single predictor of the GDI, followed by SL and SSWS. The predictive ability of the regression equations were improved following inclusion of self-report data related to mobility and prosthetic utility. CONCLUSION: This study offers a practicable alternative to quantifying kinematic deviation without the need to conduct complete 3DGA. PMID:27335814

  17. An analysis of anatomic landmark mobility and setup deviations in radiotherapy for lung cancer

    International Nuclear Information System (INIS)

    Purpose: To identify thoracic structures that exhibit little internal motion during irradiation and to determine setup variations in patients with lung cancer. Methods and Materials: Intrafractional images were generated with an electronic portal-imaging device from the AP fields of 10 patients, during several fractions. To determine the intrafractional mobility of thoracic structures, visible structures were contoured in every image and matched with a reference image by means of a cross-correlation algorithm. Setup variations were determined by comparing portal images with the digitized simulator films using the stable structures as landmarks. Results: Mobility was limited in the lateral direction for the trachea, thoracic wall, paraspinal line, and aortic notch, and in the craniocaudal direction for the clavicle, aortic notch, and thoracic wall. Analysis of patient setup revealed random deviations of 2.0 mm (1 SD) in the lateral direction and 2.8 mm in the craniocaudal direction, while the systematic deviations were 2.5 and 2.0 mm (1 SD) respectively. Conclusions: We have identified thoracic structures that exhibit little internal motion in the frontal plane, and recommend that these structures be used for verifying patient setup during radiotherapy. The daily variation in the setup of lung cancer patients at our center appears to be acceptable

  18. Estimation of random deviation effect of pipeline geometry on hydraulic nonuniformity at reactor inlet

    International Nuclear Information System (INIS)

    Approximate formula enabling to evaluate hydraulic nonuniformity at reactor core inlet is given. The mentioned nonuniformity depends on 13 structural parameters of reactor hydraulic pipeline - from branch pipes up to the header. Dispersion technique for evaluation of the effect of structural parameter deviation on the spread of resulting nonuniformity is applied to the dependence. Coefficients of the effect have been obtained. Calculation has been conducted for the example, the minimal flow rate in reactor channel has been evaluated as 0.65±0.14

  19. Determining Statistically Significant Deviations from a Model Crater Production Function for Estimating Resurfacing Events

    Science.gov (United States)

    Weaver, B. P.; Hilbe, J. M.; Robbins, S. J.; Plesko, C. S.; Riggs, J. D.

    2015-05-01

    Many crater analysts will search for deviations of observed crater population data from model crater populations and treat those deviations as a modification event - usually resurfacing. We will discuss how to assign confidences for these deviations.

  20. A study on the deviation aspects of the poem “The Eightieth Stage”

    Directory of Open Access Journals (Sweden)

    Soghra Salmaninejad Mehrabadi

    2016-02-01

    Full Text Available Abstract  One of the methods of literature review is addressing the literary forms that deeply attracted formalists’ attention. Formalists emphasizes certain shapes and forms and methods of literary language. In their view, the task of literature and art is not making known but representing the elements in the realm of art. So, for creating an outstanding work, novelty is not just important, but modes of expression can show a new dimension of the world to audience.   Shklovsky raised for the first time the term “de familiarization”. In his opinion, art renews sensory perception and transforms the familiar rules and seemingly enduring structures of reality. He believes defamiliarization is seeing things out of their natural context. According to Leach, the two usual methods to distinguish the general language from the language of arts are rule-increasing and rule-decreasing.   In deviation occurs a resurrection of words and the author creates a double pleasure through language games in contact with the audience. Imagery, music and syntax can produce a kind of defamiliarization.   Akhavan in the poem “The Eightieth Stag e ” has used a variety of deviations. The first is in the name of poetry. In this paper, the norms of lexical, semantic and stylistic in the poem “Eightieth Stage” is checked.   Lexical deviation Sartre says the poet does not use the words, but sometimes words would use the new syntax. Akhavan in the words sometimes making terms such as “mardestan (masculinity, faramoshzar (plains of oblivion, gandomand (Robust, golazin (inflorescence, parhib (deception and ...” and sometimes new compounds alters magically the effect of poetry. His compounds like talaei makhmal avayan (golden voices and velvet, pak ayin (clean rituals, malmalin dastar (silver turban, marde mardestan (men of masculinity, rakhshe rakhshande (the brilliant horse and…" makes illustration that in some of synergistic base has helped to the poet

  1. Frequency deviations and generation scheduling in the nordic system

    DEFF Research Database (Denmark)

    Li, Zhongwei; Samuelsson, Olaf; Garcia-Valle, Rodrigo

    2011-01-01

    High penetration of variable generation such as wind power increases the demands on frequency control. The same applies to island operation and in particular if this involves variable generation, which is planned at the Danish island Bornholm. While it is obvious that the frequency control need to...... the frequency deviations and hourly scheduled generation. A simple model is given to reproduce these deterministic frequency variations. Simulations indicate that smaller system size as is typical for island operation does not necessarily increase these frequency variations provided load, generation...

  2. Deviations in Tribimaximal Mixing From Sterile Neutrino Sector

    CERN Document Server

    Dev, S; Gautam, Radha Raman

    2016-01-01

    We explore the possibility of generating a non-zero $U_{e3}$ element of the neutrino mixing matrix from tribimaximal neutrino mixing by adding a light sterile neutrino to the active neutrinos. Small active-sterile mixing can provide the necessary deviation from tribimaximal mixing to generate a non-zero $\\theta_{13}$ and atmospheric mixing $\\theta_{23}$ different from maximal. Assuming no CP-violation, we study the phenomenological impact of sterile neutrinos in the context of current neutrino oscillation data. The tribimaximal pattern is broken in such a manner that the second column of tribimaximal mixing remains intact in the neutrino mixing matrix.

  3. Quality Assessment of Vertical Angular Deviations for Photometer Calibration Benches

    International Nuclear Information System (INIS)

    Lighting, both natural and electric, constitutes one of the most important aspects of the life of human beings, allowing us to see and perform our daily tasks in outdoor and indoor environments. The safety aspects of lighting are self-evident in areas such as road lighting, urban lighting and also indoor lighting. The use of photometers to measure lighting levels requires traceability obtained in accredited laboratories, which must provide an associated uncertainty. It is therefore relevant to study the impact of known uncertainty sources like the vertical angular deviation of photometer calibration benches, in order to define criteria to its quality assessment

  4. The Time Deviation in Packet-Based Synchronization.

    Science.gov (United States)

    Weiss, M A; Shenoi, Kishan

    2016-04-01

    The telecommunications industry has used the time deviation (TDEV) very effectively for specifying network equipment clock performance as well as the performance of timing signals generated by Central Office equipment such as primary reference clocks and building integrated timing supplies (BITS) and synchronization supply units (SSUs). We discuss here the development of TDEV, and the variations of TDEV motivated by the advent of packet-switching and the steady transformation of the telecom network from circuit-switched-based to packet-switched-based. We illustrate these with simulation of the performance of the precise time protocol (PTP) across a packet-switched network. We then apply published methods to automatically determine noise types, and use these to predict time dispersion from a master clock for a slave clock using these PTP packets to stay synchronized. The result shows how TDEV and the other deviations provide an extensive array of tools for telecom networks, as well as for general time and frequency applications. PMID:26529756

  5. Large deviations for random walk in a random environment

    CERN Document Server

    Yilmaz, Atilla

    2008-01-01

    In this work, we study the large deviation properties of random walk in a random environment on $\\mathbb{Z}^d$ with $d\\geq1$. We start with the quenched case, take the point of view of the particle, and prove the large deviation principle (LDP) for the pair empirical measure of the environment Markov chain. By an appropriate contraction, we deduce the quenched LDP for the mean velocity of the particle and obtain a variational formula for the corresponding rate function $I_q$. We propose an Ansatz for the minimizer of this formula. This Ansatz is easily verified when $d=1$. In his 2003 paper, Varadhan proves the averaged LDP for the mean velocity and gives a variational formula for the corresponding rate function $I_a$. Under the non-nestling assumption (resp. Kalikow's condition), we show that $I_a$ is strictly convex and analytic on a non-empty open set $\\mathcal{A}$, and that the true velocity $\\xi_o$ is an element (resp. in the closure) of $\\mathcal{A}$. We then identify the minimizer of Varadhan's variati...

  6. Absorbed dose evaluation by SISCODES code, kerma and fluence deviations

    International Nuclear Information System (INIS)

    Radiotherapy is a common treatment of cancer. Radiotherapy exposes the patient to a radiation field, producing ionization, and absorbed dose. A precise dose calculation and the ability to execute the irradiation on the patient are necessary in order to avoid serious injuries on the surrounding health tissue, thus, the maximum acceptable absorbed dose error from the prescribed and applied is about 5%. The doses on radiotherapy are usually calculated by superimposition experimental dose profile, namely PDP, which is experimentally measured in a water simulator. Moreover, the radiation interaction with human body tissues depends on the chemical composition and the tissue density, which means the anthropomorphism and anthropometric of the human being. This paper evaluates the deviation of calculated value of kerma, induced by human body heterogeneities. To do this job two thorax voxel models created on SISCODES (one filled with various tissues other filled with water) were applied. The result of simulations permits two different comparisons. One is the ratio between tissues kermas and water kerma. Another is the ratio between human phantom fluence, where exists radiation scatter and reflection, and water phantom fluence. The reconstructed pictures of studied regions showing the calculated ratios, and graphs of the ratios versus energy of each tissue are shown. The dose ratio deviations obtained are, in some situations, larger than the acceptable 5% point out serious miscalculation of doses for some spatial regions on the human body. (author)

  7. Some Deviations Associated With Vector Perturbation Diffraction Theory

    Science.gov (United States)

    Stover, John C.; Hourmand, Bahrarr

    1985-01-01

    Last year at this conference our lab presented some data which strongly supports the use of the vector perturbation relationship between light scattered from smooth surfaces and the surface power spectral density (PSD). Last year's data showed that a consistent answer was obtained for the PSD for measurements taken with S and P polarization, with incident angles up to 45', for positive and negative sweeps, and for one and two dimensional samples. If in fact the theoretical relationship is correct then this must be the case, as the PSD is determined by a combination of surface topography and the scattering situation (geometry, polarization, wavelength, etc.). It appears, however that for large scatter angles (>700) and for large angles of incidence (>60 °) there is some deviation in the calculated PSD. In addition, the high angle scatter region is an area where a scatterometer with a semicircular detector sweep loses the one-to-one relationship between detector position and surface spatial frequency. Or, in other words, light diffracted to high scatter angles from single spatial frequencies appears over a small band on the observation semicircle instead of a diffraction limited point. Fata supporting these two deviations is presented. Although they are not regarded as serious violations of the vector perturbation theory they do impose a limit on the useful range over which the PSD may be calculated.

  8. Maximum acceptable forces for repetitive ulnar deviation of the wrist.

    Science.gov (United States)

    Snook, S H; Vaillancourt, D R; Ciriello, V M; Webster, B S

    1997-07-01

    The purpose of this experiment was to quantify maximum acceptable forces for ulnar deviation motions of the wrist at various repetition rates. Subjects grasped a handle with a power grip and moved it through a 1.40 rad (80 degrees) ulnar deviation wrist motion (similar to a knife cutting task). A psychophysical methodology was used in which the subject adjusted the resistance on the handle and the experiment manipulated or controlled all other variables. Two series of experiments were conducted. Thirteen subjects completed the first series, which investigated repetition rates of 15 and 20 motions per minute. Eleven subjects completed the second series, which investigated 15, 20, and 25 motions per minute. Subjects performed for 7 hours per day, 5 days per week, for 4 weeks in the first series and 5 weeks in the second series. The subjects were instructed to work as if they were on an incentive basis, getting paid for the amount of work they performed. Symptoms were recorded by the subjects during the last 5 minutes of each hour. The results are presented and compared with maximum acceptable forces for wrist flexion and extension. PMID:9208467

  9. Utilizing a vanadium redox flow battery to avoid wind power deviation penalties in an electricity market

    International Nuclear Information System (INIS)

    Highlights: • Vanadium redox flow battery utilized for wind power grid integration was studied. • Technical and financial analyses at single wind farm level were performed. • 2 MW/6 MW h VRFB is suitable for mitigating power deviations for a 10 MW wind farm. • Economic incentives might be required in the short-term until the VRFB prices drop. - Abstract: Utilizing a vanadium redox flow battery (VRFB) for better market integration of wind power at a single wind farm level was evaluated. A model which combines a VRFB unit and a medium sized (10 MW) wind farm was developed and the battery was utilized to compensate for the deviations resulting from the forecast errors in an electricity market bidding structure. VRFB software model which was introduced in our previous paper was integrated with real wind power data, power forecasts and market data based on the Spanish electricity market. Economy of the system was evaluated by financial assessments which were done by considering the VRFB costs and the amount of deviation penalty payments resulting from forecast inaccuracies

  10. Temperature deviation index and elderly mortality in Japan

    Science.gov (United States)

    Lim, Youn-Hee; Reid, Colleen E.; Honda, Yasushi; Kim, Ho

    2016-07-01

    Few studies have examined how the precedence of abnormal temperatures in previous neighboring years affects the population's health. In the present study, we attempted to quantify the health effects of abnormal weather patterns by creating a metric called the temperature deviation index (TDI) and estimated the effects of TDI on mortality in Japan. We used data from 47 prefectures in Japan to compute the TDI on days between May and September from 1966 to 2010. The TDI is a summed product of an indicator of absence of high temperatures in the neighboring years, and more weights were assigned to the years closest to the current year. To estimate the TDI effects on elderly mortality, we used generalized linear modeling with a Poisson distribution after adjusting for apparent temperature, barometric pressure, day of the week, and time trend. For each prefecture, we estimated the TDI effects and pooled the estimates to yield a national average for 1991-2010 in Japan. The estimated effects of TDI in middle- or high-latitude prefectures were greater than in low-latitude prefectures. The estimated national average of TDI effects was a 0.5 % (95 % confidence intervals [CI], 0.1, 1.0) increase in elderly mortality per 1-unit (around 1 standard deviation) increase in the TDI. The significant pooled estimation of TDI effects was mainly due to the TDI effects on summer days with moderate temperature (25th-49th percentile, mean temperature 22.9 °C): a 1.9 % (95 % CI, 1.1, 2.6) increase in elderly mortality per 1-unit increase in the TDI. However, TDI effects were insignificant in other temperature ranges. These findings suggest that elderly deaths increased on moderate temperature days in the summer that differed substantially from days during that time window in the neighboring years. Therefore, not only high temperature itself but also temperature deviation compared to previous years could be considered to be a risk factor for elderly mortality in the summer.

  11. Deviations from uniform power law scaling in nonstationary time series

    Science.gov (United States)

    Viswanathan, G. M.; Peng, C. K.; Stanley, H. E.; Goldberger, A. L.

    1997-01-01

    A classic problem in physics is the analysis of highly nonstationary time series that typically exhibit long-range correlations. Here we test the hypothesis that the scaling properties of the dynamics of healthy physiological systems are more stable than those of pathological systems by studying beat-to-beat fluctuations in the human heart rate. We develop techniques based on the Fano factor and Allan factor functions, as well as on detrended fluctuation analysis, for quantifying deviations from uniform power-law scaling in nonstationary time series. By analyzing extremely long data sets of up to N = 10(5) beats for 11 healthy subjects, we find that the fluctuations in the heart rate scale approximately uniformly over several temporal orders of magnitude. By contrast, we find that in data sets of comparable length for 14 subjects with heart disease, the fluctuations grow erratically, indicating a loss of scaling stability.

  12. Large Deviation Results for Generalized Compound Negative Binomial Risk Models

    Institute of Scientific and Technical Information of China (English)

    Fan-chao Kong; Chen Shen

    2009-01-01

    In this paper we extend and improve some results of the large deviation for random sums of random variables.Let {Xn;n≥1} be a sequence of non-negative,independent and identically distributed random variables with common heavy-tailed distribution function F and finite mean μ∈R+,{N(n);n≥0} be a sequence of negative binomial distributed random variables with a parameter p ∈(0,1),n≥0,let {M(n);n≥0} be a Poisson process with intensity λ0.Suppose {N(n);n≥0},{Xn;n≥1} and {M(n);n≥0} are mutually results.These results can be applied to certain problems in insurance and finance.

  13. Distributed Detection over Noisy Networks: Large Deviations Analysis

    CERN Document Server

    Jakovetic, Dusan; Xavier, Joao

    2011-01-01

    We study the large deviations performance of consensus+innovations distributed detection over noisy networks, where sensors at a time step k cooperate with immediate neighbors (consensus) and assimilate their new observations (innovation.) We show that, even under noisy communication, \\emph{all sensors} can achieve exponential decay e^{-k C_{\\mathrm{dis}}} of the detection error probability, even when certain (or most) sensors cannot detect the event of interest in isolation. We achieve this by designing a single time scale stochastic approximation type distributed detector with the optimal weight sequence {\\alpha_k}, by which sensors weigh their neighbors' messages. The optimal design of {\\alpha_k} balances the opposing effects of communication noise and information flow from neighbors: larger, slowly decaying \\alpha_k improves information flow but injects more communication noise. Further, we quantify the best achievable C_{\\mathrm{dis}} as a function of the sensing signal and noise, communication noise, an...

  14. Image contrast enhancement based on a local standard deviation model

    International Nuclear Information System (INIS)

    The adaptive contrast enhancement (ACE) algorithm is a widely used image enhancement method, which needs a contrast gain to adjust high frequency components of an image. In the literature, the gain is usually inversely proportional to the local standard deviation (LSD) or is a constant. But these cause two problems in practical applications, i.e., noise overenhancement and ringing artifact. In this paper a new gain is developed based on Hunt's Gaussian image model to prevent the two defects. The new gain is a nonlinear function of LSD and has the desired characteristic emphasizing the LSD regions in which details are concentrated. We have applied the new ACE algorithm to chest x-ray images and the simulations show the effectiveness of the proposed algorithm

  15. Lyapunov exponents of linear cocycles continuity via large deviations

    CERN Document Server

    Duarte, Pedro

    2016-01-01

    The aim of this monograph is to present a general method of proving continuity of Lyapunov exponents of linear cocycles. The method uses an inductive procedure based on a general, geometric version of the Avalanche Principle. The main assumption required by this method is the availability of appropriate large deviation type estimates for quantities related to the iterates of the base and fiber dynamics associated with the linear cocycle. We establish such estimates for various models of random and quasi-periodic cocycles. Our method has its origins in a paper of M. Goldstein and W. Schlag. Our present work expands upon their approach in both depth and breadth. We conclude this monograph with a list of related open problems, some of which may be treated using a similar approach.

  16. Large deviations of heat flow in harmonic chains

    International Nuclear Information System (INIS)

    We consider heat transport across a harmonic chain connected at its two ends to white-noise Langevin reservoirs at different temperatures. In the steady state of this system the heat Q flowing from one reservoir into the system in a finite time τ has a distribution P(Q, τ). We study the large time form of the corresponding moment generating function (e−λQ) ∼ g(λ)eτμ(λ). Exact formal expressions, in terms of phonon Green's functions, are obtained for both μ(λ) and also the lowest order correction g(λ). We point out that, in general, a knowledge of both μ(λ) and g(λ) is required for finding the large deviation function associated with P(Q, τ). The function μ(λ) is known to be the largest eigenvector of an appropriate Fokker–Planck type operator and our method also gives the corresponding eigenvector exactly

  17. Large deviations from the thermodynamic limit in globally coupled maps

    CERN Document Server

    Hamm, A

    1999-01-01

    Systems of a large number N of globally coupled maps have become popular as a relatively simple prototype of high-dimensional dynamics, showing many interesting and typical phenomena like synchronisation, cluster formation and multistability, and having potential applications in systems like Josephson junction arrays or in biophysical models. There exists a wealth of numerical investigations of globally coupled maps. While much progress has been made in the explanation of the macroscopic behaviour of such systems in the limit of infinite N, there is still need for a sound theory about the asymptotic behaviour of finite-N systems as N approaches infinity. This article introduces a method by which it is possible to obtain asymptotic estimates for long-term deviations from the thermodynamic limit behaviour. This method is based upon the concept of quasipotentials, originally developed by Freidlin, Wentzell, and others for describing the influence of small random perturbations on the long-term behaviour of dynami...

  18. The deviation of growth model for transparent conductive graphene

    Science.gov (United States)

    Chan, Shih-Hao; Chen, Jia-Wei; Chen, Hung-Pin; Wei, Hung-Sen; Li, Meng-Chi; Chen, Sheng-Hui; Lee, Cheng-Chung; Kuo, Chien-Cheng

    2014-10-01

    An approximate growth model was employed to predict the time required to grow a graphene film by chemical vapor deposition (CVD). Monolayer graphene films were synthesized on Cu foil at various hydrogen flow rates from 10 to 50 sccm. The sheet resistance of the graphene film was 310Ω/□ and the optical transmittance was 97.7%. The Raman intensity ratio of the G-peak to the 2D peak of the graphene film was as high as ~4 when the hydrogen flow rate was 30 sccm. The fitting curve obtained by the deviation equation of growth model closely matches the data. We believe that under the same conditions and with the same setup, the presented growth model can help manufacturers and academics to predict graphene growth time more accurately.

  19. The gait standard deviation, a single measure of kinematic variability.

    Science.gov (United States)

    Sangeux, Morgan; Passmore, Elyse; Graham, H Kerr; Tirosh, Oren

    2016-05-01

    Measurement of gait kinematic variability provides relevant clinical information in certain conditions affecting the neuromotor control of movement. In this article, we present a measure of overall gait kinematic variability, GaitSD, based on combination of waveforms' standard deviation. The waveform standard deviation is the common numerator in established indices of variability such as Kadaba's coefficient of multiple correlation or Winter's waveform coefficient of variation. Gait data were collected on typically developing children aged 6-17 years. Large number of strides was captured for each child, average 45 (SD: 11) for kinematics and 19 (SD: 5) for kinetics. We used a bootstrap procedure to determine the precision of GaitSD as a function of the number of strides processed. We compared the within-subject, stride-to-stride, variability with the, between-subject, variability of the normative pattern. Finally, we investigated the correlation between age and gait kinematic, kinetic and spatio-temporal variability. In typically developing children, the relative precision of GaitSD was 10% as soon as 6 strides were captured. As a comparison, spatio-temporal parameters required 30 strides to reach the same relative precision. The ratio stride-to-stride divided by normative pattern variability was smaller in kinematic variables (the smallest for pelvic tilt, 28%) than in kinetic and spatio-temporal variables (the largest for normalised stride length, 95%). GaitSD had a strong, negative correlation with age. We show that gait consistency may stabilise only at, or after, skeletal maturity. PMID:27131201

  20. Spine deviations and orthodontic treatment of asymmetric malocclusions in children

    Directory of Open Access Journals (Sweden)

    Lippold Carsten

    2012-08-01

    Full Text Available Abstract Background The aim of this randomized clinical trial was to assess the effect of early orthodontic treatment for unilateral posterior cross bite in the late deciduous and early mixed dentition using orthopedic parameters. Methods Early orthodontic treatment was performed by initial maxillary expansion and subsequent activator therapy (Münster treatment concept. The patient sample was initially comprised of 80 patients with unilateral posterior cross bite (mean age 7.3 years, SD 2.1 years. After randomization, 77 children attended the initial examination appointment (therapy = 37, control = 40; 31 children in the therapy group and 35 children in the control group were monitored at the follow-up examination (T2. The mean interval between T1 and T2 was 1.1 years (SD 0.2 years. Rasterstereography was used for back shape analysis at T1 and T2. Using the profile, the kyphotic and lordotic angle, the surface rotation, the lateral deviation, pelvic tilt and pelvic torsion, statistical differences at T1 and T2 between the therapy and control groups were calculated (t-test. Our working hypothesis was, that early orthodontic treatment can induce negative therapeutic changes in body posture through thoracic and lumbar position changes in preadolescents with uniltaral cross bite. Results No clinically relevant differences between the control and the therapy groups at T1 and T2 were found for the parameters of kyphotic and lordotic angle, the surface rotation, lateral deviation, pelvic tilt, and pelvic torsion. Conclusions Our working hypothesis was tested to be not correct (within the limitations of this study. This randomized clinical trial demonstrates that in a juvenile population with unilateral posterior cross bite the selected early orthodontic treatment protocol does not affect negatively the postural parameters. Trial registration DRKS00003497 on DRKS

  1. Generalized deviation equation and determination of the curvature in General Relativity

    OpenAIRE

    Puetzfeld, Dirk; Obukhov, Yuri N.

    2015-01-01

    We derive a generalized deviation equation -- analogous to the well-known geodesic deviation equation -- for test bodies in General Relativity. Our result encompasses and generalizes previous extensions of the standard geodesic deviation equation. We show how the standard as well as a generalized deviation equation can be used to measure the curvature of spacetime by means of a set of test bodies. In particular, we provide exact solutions for the curvature by using the standard deviation equa...

  2. Properties of Planet-induced Deviations in the Astrometric Microlensing Centroid Shift Trajectory

    OpenAIRE

    Han, Cheongho; Lee, Chunguk

    2001-01-01

    In this paper, we investigate the properties of the planet-induced deviations in the trajectory of the microlensed source star centroid motion (astrometric curve) and the correlations between the astrometric and photometric deviations. For this, we construct vector field maps of excess centroid shifts. Fromthe investigation of the maps, we find that the astrometric deviation is closely correlated with the photometric one. The astrometric deviation increases as the photometric deviation increa...

  3. Large-deviation properties of resilience of power grids

    International Nuclear Information System (INIS)

    We study the distributions of the resilience of power flow models against transmission line failures via a so-called backup capacity. We consider three ensembles of random networks, and in addition, the topology of the British transmission power grid. The three ensembles are Erdős–Rényi random graphs, Erdős–Rényi random graphs with a fixed number of links, and spatial networks where the nodes are embedded in a two-dimensional plane. We numerically investigate the probability density functions (pdfs) down to the tails to gain insight into very resilient and very vulnerable networks. This is achieved via large-deviation techniques, which allow us to study very rare values that occur with probability densities below 10−160. We find that the right tail of the pdfs towards larger backup capacities follows an exponential with a strong curvature. This is confirmed by the rate function, which approaches a limiting curve for increasing network sizes. Very resilient networks are basically characterized by a small diameter and a large power sign ratio. In addition, networks can be made typically more resilient by adding more links. (paper)

  4. Optimal aggregation of noisy observations: A large deviations approach

    International Nuclear Information System (INIS)

    Sensing and data aggregation tasks in distributed systems should not be considered as separate issues. The quality of collective estimation involves a fundamental tradeoff between sensing quality, which can be increased by increasing the number of sensors, and aggregation quality under a given capacity of the network, which decreases if the number of sensors is too large. In this paper, we examine a system level strategy for optimal aggregation of data from an ensemble of independent sensors. In particular, we consider large scale aggregation from very many sensors, in which case the network capacity diverges to infinity. Then, by applying the large deviations techniques, we conclude the following significant result: larger scale aggregation always outperforms smaller scale aggregation at higher noise levels, while below a critical value of noise, there exist moderate scale aggregation levels at which optimal estimation is realized. At a critical value of noise, there is an abrupt change in the behavior of a parameter characterizing the aggregation strategy, similar to a phase transition in statistical physics.

  5. Gait Deviations in Children with Autism Spectrum Disorders: A Review

    Directory of Open Access Journals (Sweden)

    Deirdre Kindregan

    2015-01-01

    Full Text Available In recent years, it has become clear that children with autism spectrum disorders (ASDs have difficulty with gross motor function and coordination, factors which influence gait. Knowledge of gait abnormalities may be useful for assessment and treatment planning. This paper reviews the literature assessing gait deviations in children with ASD. Five online databases were searched using keywords “gait” and “autism,” and 11 studies were found which examined gait in childhood ASD. Children with ASD tend to augment their walking stability with a reduced stride length, increased step width and therefore wider base of support, and increased time in the stance phase. Children with ASD have reduced range of motion at the ankle and knee during gait, with increased hip flexion. Decreased peak hip flexor and ankle plantar flexor moments in children with ASD may imply weakness around these joints, which is further exhibited by a reduction in ground reaction forces at toe-off in children with ASD. Children with ASD have altered gait patterns to healthy controls, widened base of support, and reduced range of motion. Several studies refer to cerebellar and basal ganglia involvement as the patterns described suggest alterations in those areas of the brain. Further research should compare children with ASD to other clinical groups to improve assessment and treatment planning.

  6. Assessment of fluctuating asymmetry on the basis of standard deviation

    OpenAIRE

    Zorina Anastasia

    2013-01-01

    The practical application of newly introduced indicator and integrated index of fluctuating asymmetry, based on standard deviation, is discussed. The calculating mechanism of proposed assessment is discussed in detail.Обсуждается вопрос по практическому применению недавно введенного показателя и интегрального индекса флуктуирующей асимметрии на основе нормированного отклонения. Подробно рассматривается механизм вычисления предложенной оценки....

  7. Constraints on deviations from {\\Lambda}CDM within Horndeski gravity

    CERN Document Server

    Bellini, Emilio; Jimenez, Raul; Verde, Licia

    2015-01-01

    Recent anomalies found in cosmological datasets such as the low multipoles of the Cosmic Microwave Background or the low redshift amplitude and growth of clustering measured by e.g., abundance of galaxy clusters and redshift space distortions in galaxy surveys, have motivated explorations of models beyond standard {\\Lambda}CDM. Of particular interest are models where general relativity (GR) is modified on large cosmological scales. Here we consider deviations from {\\Lambda}CDM+GR within the context of Horndeski gravity, which is the most general theory of gravity with second derivatives in the equations of motion. We adopt a parametrization in which the four additional Horndeski functions of time {\\alpha}_i(t) are proportional to the cosmological density of dark energy {\\Omega}_DE(t). Constraints on this extended parameter space using a suite of state-of-the art cosmological observations are presented for the first time. Although the theory is able to accommodate the low multipoles of the Cosmic Microwave Bac...

  8. Quantum Properties of a General Path Deviation Equation in the Pap-Geometry

    CERN Document Server

    Wanas, M I

    2004-01-01

    A path deviation equation in the Parameterized Absolute Parallelism (PAP) geometry is derived. This equation includes curvature and torsion terms. These terms are found to be naturally quantized. The equation represents the deviation from a general path equation, in the PAP-geometry, derived by the author in a previous work. It is shown that, as the effect of the torsion, on the deviation, increases, the effect of the curvature decreases. It is also shown that the general path deviation equation can be reduced to the geodesic deviation equation if PAP-geometry becomes Riemannian. The equation can be used to study the deviation from the trajectories of spinning elementary particles.

  9. MODERATE DEVIATIONS FROM HYDRODYNAMIC LIMIT OF A GINZBURG-LANDAU MODEL

    Institute of Scientific and Technical Information of China (English)

    2006-01-01

    The authors consider the moderate deviations of hydrodynamic limit for Ginzburg-Landau models. The moderate deviation principle of hydrodynamic limit for a specific Ginzburg-Landau model is obtained and an explicit formula of the rate function is derived.

  10. Moderate deviations for the quenched mean of the super-Brownian motion with random immigration

    Institute of Scientific and Technical Information of China (English)

    2008-01-01

    Moderate deviations for the quenched mean of the super-Brownian motion with random immigration are proved for 3≤d≤6, which fills in the gap between central limit theorem(CLT)and large deviation principle(LDP).

  11. Sea Surface Height Deviation, Aviso, 0.25 degrees, Global, Science Quality

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Aviso Sea Surface Height Deviation is the deviation from the mean geoid as measured from 1993 - 1995. This is Science Quality data.

  12. Deviation equation in spaces with affine connection. Pts. 3 and 4

    International Nuclear Information System (INIS)

    The concept of a parallel transport is used to define a class of displacement vectors in spaces with affine connection. The nonlocal deviation equation in such spaces is introduced using a definition of the deviation vector based on the displacement vector. It turns out to be a special of the generalized deviation equation, but having an appropriate physical interpretation. The equation of geodesic deviation is presented as an example

  13. On the asymptotic distribution of the mean absolute deviation about the mean

    OpenAIRE

    Segers, Johan

    2014-01-01

    The mean absolute deviation about the mean is an alternative to the standard deviation for measuring dispersion in a sample or in a population. For stationary, ergodic time series with a finite first moment, an asymptotic expansion for the sample mean absolute deviation is proposed. The expansion yields the asymptotic distribution of the sample mean absolute deviation under a wide range of settings, allowing for serial dependence or an infinite second moment. Key words: central limit theorem;...

  14. On the asymptotic distribution of the mean absolute deviation about the mean

    OpenAIRE

    Segers, Johan

    2014-01-01

    The mean absolute deviation about the mean is an alternative to the standard deviation for measuring dispersion in a sample or in a population. For stationary, ergodic time series with a finite first moment, an asymptotic expansion for the sample mean absolute deviation is proposed. The expansion yields the asymptotic distribution of the sample mean absolute deviation under a wide range of settings, allowing for serial dependence or an infinite second moment.

  15. Necessary and sufficient conditions for moderate deviations of dependent random variables with heavy tails

    Institute of Scientific and Technical Information of China (English)

    2010-01-01

    This paper studies the moderate deviations of real-valued extended negatively dependent(END) random variables with consistently varying tails.The moderate deviations of partial sums are first given.The results are then used to establish the necessary and sufficient conditions for the moderate deviations of random sums under certain circumstances.

  16. 7 CFR 400.174 - Notification of deviation from financial standards.

    Science.gov (United States)

    2010-01-01

    ... 7 Agriculture 6 2010-01-01 2010-01-01 false Notification of deviation from financial standards. 400.174 Section 400.174 Agriculture Regulations of the Department of Agriculture (Continued) FEDERAL... Notification of deviation from financial standards. An insurer must immediately advise FCIC if it deviates...

  17. 1 CFR 21.14 - Deviations from standard organization of the Code of Federal Regulations.

    Science.gov (United States)

    2010-01-01

    ... CODIFICATION General Numbering § 21.14 Deviations from standard organization of the Code of Federal Regulations. (a) Any deviation from standard Code of Federal Regulations designations must be approved in advance... 1 General Provisions 1 2010-01-01 2010-01-01 false Deviations from standard organization of...

  18. Revisiting a 90-Year-Old Debate: The Advantages of the Mean Deviation

    Science.gov (United States)

    Gorard, Stephen

    2005-01-01

    This paper discusses the reliance of numerical analysis on the concept of the standard deviation, and its close relative the variance. It suggests that the original reasons why the standard deviation concept has permeated traditional statistics are no longer clearly valid, if they ever were. The absolute mean deviation, it is argued here, has many…

  19. System for the measurement of the deviation of a laser beam from the vertical direction.

    Science.gov (United States)

    Zeng, Tao; Lu, Yunfeng; Yang, Hongxin; Hu, Pengcheng; Liu, Yongmeng; Li, Zhengkun; Zhang, Zhonghua

    2016-04-01

    If a used "vertical beam" is not perfectly vertical in a measurement, a cosine error will be introduced into it. To decrease and compensate for this cosine error, a measurement system is proposed to measure the deviation of the laser beam from the vertical direction. The structure of our measurement system is illustrated, and a model for solving for the deviation angle is established. As the distance of the beam spots on the charge-coupled device is the essential parameter for the measurement results, the acquisition process for this distance is explained. Moreover, the accuracy of the algorithm used in the acquisition process is also tested by experiments. Further, a self-correction module is designed and applied to reduce the error caused by the corner cube reflector in the system. The characteristics of the measurement system such as the resolution, stability, temperature drift, and direction accuracy are analyzed through experiments. The combined uncertainty of the measurement system is calculated to be 11×10-6  rad. PMID:27139674

  20. ON FATIGUE CRACK PATH DEVIATION AT ELEVATED TEMPERATURE IN ELECTRON BEAM REPAIRED WELDMENTS OF TURBINE DISK

    Institute of Scientific and Technical Information of China (English)

    H.Q. Zhang; H.Y. Zhao; Y.H. Zhang; L.H. Li; X.A. Zhang

    2004-01-01

    Fatigue crack growth behaviors in electron beam weldments of a nickel-base superalloy are studied. The objective of this paper is to discuss effects of the inhomogeneity of mechanical performance on fatigue crack growth (FCG) rate and crack path deviation (CPD). The base metal served in a turbine disk of aerospace engine was selected to fabricate bead-on-plate weldments by using electron beam welding. Some wedge-type opening loading specimens, notched in three different zone of weld metal, HAZ and base metal, were employed and performed fatigue crack growth tests at 650℃. The results show that the fatigue crack growth of electron beam welded joints is instable due to the influence of mechanical heterogeneities. Owing to the crack deviation at the weld metal and hcat-affected-zone (HAZ), the effective growth driving force at the tip of fatigue crack was reduced with the reduction of the effective stress intensity factor (SIF) which finally causes fatigue crack rate decrease. Fatigue crack was strongly affected by size and the symmetrical characteristics of the plastic zone at the crack tip, which means that the integrity of the welded structure containing the fatigue crack mainly depended on the toughness of the low strength zone.

  1. On the applicability of the geodesic deviation equation in General Relativity

    CERN Document Server

    Philipp, Dennis; Laemmerzahl, Claus

    2016-01-01

    Within the theory of General Relativity we study the solution and range of applicability of the standard geodesic deviation equation in highly symmetric spacetimes. The deviation equation is used to model satellite orbit constellations around the earth. In particular, we reconsider the deviation equation in Newtonian gravity and then determine relativistic effects within the theory of General Relativity. The deviation of nearby orbits, as constructed from exact solutions of the underlying geodesic equation, is compared to the solution of the geodesic deviation equation to assess the accuracy of the latter. Furthermore, we comment on the so-called Shirokov effect in Schwarzschild spacetime.

  2. GENERIC formalism of a Vlasov–Fokker–Planck equation and connection to large-deviation principles

    International Nuclear Information System (INIS)

    In this paper we discuss the connections between a Vlasov–Fokker–Planck equation and an underlying microscopic particle system, and we interpret those connections in the context of the GENERIC framework (Öttinger 2005 Beyond Equilibrium Thermodynamics (New York: Wiley-Interscience)). This interpretation provides (a) a variational formulation for GENERIC systems, (b) insight into the origin of this variational formulation, and (c) an explanation of the origins of the conditions that GENERIC places on its constitutive elements, notably the so-called degeneracy or non-interaction conditions. This work shows how the general connection between large-deviation principles on one hand and gradient-flow structures on the other hand extends to non-reversible particle systems. (paper)

  3. Expected distributions of root-mean-square positional deviations in proteins.

    Science.gov (United States)

    Pitera, Jed W

    2014-06-19

    The atom positional root-mean-square deviation (RMSD) is a standard tool for comparing the similarity of two molecular structures. It is used to characterize the quality of biomolecular simulations, to cluster conformations, and as a reaction coordinate for conformational changes. This work presents an approximate analytic form for the expected distribution of RMSD values for a protein or polymer fluctuating about a stable native structure. The mean and maximum of the expected distribution are independent of chain length for long chains and linearly proportional to the average atom positional root-mean-square fluctuations (RMSF). To approximate the RMSD distribution for random-coil or unfolded ensembles, numerical distributions of RMSD were generated for ensembles of self-avoiding and non-self-avoiding random walks. In both cases, for all reference structures tested for chains more than three monomers long, the distributions have a maximum distant from the origin with a power-law dependence on chain length. The purely entropic nature of this result implies that care must be taken when interpreting stable high-RMSD regions of the free-energy landscape as "intermediates" or well-defined stable states. PMID:24655018

  4. Deviating T-DNA transfer from Agrobacterium tumefaciens to plants

    DEFF Research Database (Denmark)

    van der Graaff, Eric; den Dulk-Ras, A; Hooykaas, P J

    1996-01-01

    . Surprisingly, in four independent transgenic lines a complete right border repeat was present followed by binary vector sequences. Cloning of two of these T-DNA inserts by plasmid rescue showed that in these lines the transferred DNA consisted of the complete binary vector sequences in addition to the T......We analyzed 29 T-DNA inserts in transgenic Arabidopsis thaliana plants for the junction of the right border sequences and the flanking plant DNA. DNA sequencing showed that in most lines the right border sequences transferred had been preserved during integration, corroborating literature data......-region. On the basis of the structure of the transferred DNA we propose that in these lines T-DNA transfer started at the left-border repeat, continued through the vector part, passed the right border repeat, and ended only after reaching again this left-border repeat....

  5. Speaker adapted dynamic lexicons containing phonetic deviations of words

    Institute of Scientific and Technical Information of China (English)

    Bahram VAZIRNEZHAD; Farshad ALMASGANJ; Seyed Mohammad AHADI; Ari CHANEN

    2009-01-01

    Speaker variability is an important source of speech variations which makes continuous speech recognition a difficult task. Adapting automatic speech recognition (ASR) models to the speaker variations is a well-known strategy to cope with the challenge. Almost all such techniques focus on developing adaptation solutions within the acoustic models of the ASR systems. Although variations of the acoustic features constitute an important portion of the inter-speaker variations, they do not cover variations at the phonetic level. Phonetic variations are known to form an important part of variations which are influenced by both micro-segmental and suprasegmental factors. Inter-speaker phonetic variations are influenced by the structure and anatomy of a speaker's articulatory system and also his/her speaking style which is driven by many speaker background characteristics such as accent, gender, age, socioeconomic and educational class. The effect of inter-speaker variations in the feature space may cause explicit phone recognition errors. These errors can be compensated later by having appropriate pronunciation variants for the lexicon entries which consider likely phone misclassifications besides pronunciation. In this paper, we introduce speaker adaptive dynamic pronunciation models, which generate different lexicons for various speaker clusters and different ranges of speech rate. The models are hybrids of speaker adapted contextual rules and dynamic generalized decision trees, which take into account word phonological structures, rate of speech, unigram probabilities and stress to generate pronunciation variants of words. Employing the set of speaker adapted dynamic lexicons in a Farsi (Persian) continuous speech recognition task results in word error rate reductions of as much as 10.1% in a speaker-dependent scenario and 7.4% in a speaker-independent scenario.

  6. Statistical properties of the deviations of f 0 F 2 from monthly medians

    Directory of Open Access Journals (Sweden)

    Y. Tulunay

    2002-06-01

    Full Text Available The deviations of hourly f 0 F 2 from monthly medians for 20 stations in Europe during the period 1958-1998 are studied. Spectral analysis is used to show that, both for original data (for each hour and for the deviations from monthly medians, the deterministic components are the harmonics of 11 years (solar cycle, 1 year and its harmonics, 27 days and 12 h 50.49 m (2nd harmonic of lunar rotation period L 2 periodicities. Using histograms for one year samples, it is shown that the deviations from monthly medians are nearly zero mean (mean < 0.5 and approximately Gaussian (relative difference range between %10 to %20 and their standard deviations are larger for daylight hours (in the range 5-7. It is shown that the amplitude distribution of the positive and negative deviations is nearly symmetrical at night hours, but asymmetrical for day hours. The positive and negative deviations are then studied separately and it is observed that the positive deviations are nearly independent of R12 except for high latitudes, but negative deviations are modulated by R12 . The 90% confidence interval for negative deviations for each station and each hour is computed as a linear model in terms of R12. After correction for local time, it is shown that for all hours the confidence intervals increase with latitude but decrease above 60N. Long-term trend analysis showed that there is an increase in the amplitude of positive deviations from monthly means irrespective of the solar conditions. Using spectral analysis it is also shown that the seasonal dependency of negative deviations is more accentuated than the seasonal dependency of positive deviations especially at low latitudes. In certain stations, it is also observed that the 4th harmonic of 1 year corresponding to a periodicity of 3 months, which is missing in f 0 F 2 data, appears in the spectra of negative variations.

  7. The standard deviation effect (or why one should sit first base playing blackjack)

    OpenAIRE

    Garcia, E. Munoz; Marco, R. Perez

    2000-01-01

    For a balanced cardcounting system we study the random variable of the true count after a number of cards are removed from the remaining deck and we prove a close formula for its standard deviation. As expected, the formula shows that the standard deviation increases with the number of cards removed. This creates a "standard deviation effect" with a two fold consequence: longer long run and presumably larger fluctuations of the bankroll, but a small gain in playing accuracy for the player sit...

  8. Precision analysis for standard deviation measurements of single fluorescent molecule images

    OpenAIRE

    DeSantis, Michael C.; DeCenzo, Shawn H.; Li, Je-Luen; Y. M. Wang

    2009-01-01

    Standard deviation measurements of intensity profiles of stationary single fluorescent molecules are useful for studying axial localization, molecular orientation, and a fluorescence imaging system's spatial resolution. Here we report on the analysis of the precision of standard deviation measurements of intensity profiles of single fluorescent molecules imaged using an EMCCD camera. We have developed an analytical expression for the standard deviation measurement error of a single image whic...

  9. Precision analysis for standard deviation measurements of immobile single fluorescent molecule images

    OpenAIRE

    DeSantis, Michael C.; DeCenzo, Shawn H.; Li, Je-Luen; Y. M. Wang

    2010-01-01

    Standard deviation measurements of intensity profiles of stationary single fluorescent molecules are useful for studying axial localization, molecular orientation, and a fluorescence imaging system’s spatial resolution. Here we report on the analysis of the precision of standard deviation measurements of intensity profiles of single fluorescent molecules imaged using an EMCCD camera. We have developed an analytical expression for the standard deviation measurement error of a single image whic...

  10. [Surgical correction of penile deviation. Nesbit vs. Schroeder-Essed method].

    Science.gov (United States)

    Brake, M; Keller, H; Lamadé, F; Groh, R; Horsch, R

    1999-05-01

    60 patients with a marked penile deviation [40 because of a congenital penile deviation (CPD) and 20 as a result of the Peyronie's disease] were questioned about the result of the operation by means of a questionnaire in a retrospective study with an average follow-up of 45 month. The Nesbit procedure had been used with 49 of these 60 patients, the modified Schroeder-Essed technique had been used with 11 patients. There were 15 patients (25%) in all, who suffered a relapse. In spite of the continual use of non-absorbable suture material with the Schroeder-Essed technique, the number of relapses was in this group plainly higher than in the Nesbit group (55% and 18% respectively). In our opinion this is caused by the insufficient tensile strength of pure plications. Regardless of the operating method, patients suffering from IPP showed a higher number of relapses than patients having a CPD (35% and 20% respectively). The reason for this might be the fact that one can never rule out completely the possibility of a further progress of the disease. 71% of the patients in the Nesbit group were satisfied with the results of the operation, in the Schroeder-Essed group there were only 36%. Irrespective of the operating method, IPP patients complained moreoften about late complications and erection problems after the operation and were more rarely satisfied with the result than patients with a CPD (50% and 73% respectively). We put this down to the fact that patients with a CPD and patients suffering from IPP represent very different collectives as far as age structure and morbidity are concerned. IPP patients frequently have erection problems even before the operation. Especially with IPP patients, preoperative erectile disfunction must be excluded, in the case of their occurrence there are to prefer other programmes of therapy. PMID:10407986

  11. Deviation of congruent composition in Fe-Pd system

    Institute of Scientific and Technical Information of China (English)

    Tetsuo Mohri; Daisuke Hamajima; Ying Chen

    2006-01-01

    The first-principles calculation of the disordered L10 phase boundary for the Fe-Pd system is attempted by com bining the FLAPW electronic structure total energy calculations and the cluster variation method via the cluster expansion method. The lattice vibration effects are taken into account based on the Debye-Gruneisen model within quasi-harmonic approximation. The transition temperature is reproduced with very high accuracy. However, the experimental congruent tions are attempted based on the phenomenological Lennard-Jones type pair potential, which is capable of introducing both tetragonality of the L10 ordered phase and additional configurational freedom because of the magnetic spins. The preliminary calculations indicate that the tetragonality enhances the stability of the L10 ordered phase and the magnetic contributions also change the transition temperature. Despite these findings, the shift of the congruent composition still remains as a subject that needs further research. The electronic origin of the shifting of the congruent composition is briefly discussed.

  12. Systematic deviations between theoretical and experimental EXAFS functions: Possible evidence of interstitial scattering outside the muffin-tin radius

    International Nuclear Information System (INIS)

    Extended x-ray absorption fine structure (EXAFS) analysis utilizing theoretical standards generated by the FEFF6 and FEFF7 codes often suffers from small systematic deviations on the high-r side of the first neighbor peak in the Fourier transform. Similar deviations may also occur for other codes that are based on nonself-consistent muffin-tin potentials. These deviations substantially decrease the goodness of fit, and in more complex crystal systems which have more than one peak in the first neighbor shell, may change the resulting fit parameters significantly. We have carefully investigated four simple systems: Ag, Au, Pb, and RbBr, each of which has only one bond length in the first neighbor shell. Fits using theoretical functions show deviations on the high-r side of the peak; in k-space, the problem is associated with structure in the effective backscattering amplitude function F(k), calculated by FEFF, particularly in the low-k region below 8 A-1. We compare the fits obtained using FEFF functions and experimentally determined EXAFS standards. The deviations on the high-r side of the first peak are important for an accurate analysis of complex materials with several closely spaced neighbors or systems with distorted local environments, because such differences may be mistaken for additional or displaced neighbors. This is illustrated by fitting the first Ag-Ag shell for Ag metal to a sum of two peaks. A good fit can be achieved, but yields the unphysical result that a few long Ag-Ag bonds at 3.15 A exist. Models to date are based on the spherical muffin-tin approximation which ignore the nonsphericity of the true potential about each atom and treat the interstitial region as a constant potential outside the muffin-tin radii. To crudely include some anisotropy we have used H atoms at interstitial sites as a surrogate for scattering in the interstitial region and show that an additional peak occurs at exactly the region in r-space where the deviation between

  13. Effects of Thickness Deviation of Elastic Plates in Multi-Layered Resonance Systems on Frequency Spectra

    Institute of Scientific and Technical Information of China (English)

    ZHANG Hui; ZHANG Shu-Yi; FAN Li

    2009-01-01

    A model of high-overtone bulk acoustic resonators is used to study the effects of thickness deviation of elastic plates on resonance frequency spectra in planar multi-layered systems. The resonance frequency shifts induced by the thickness deviations of the elastic plates periodically vary with the resonance order, which depends on the acoustic impedance ratios of the elastic plates to piezoelectric patches. Additionally, the center lines of the frequency shift oscillations Hnearly change with the orders of the resonance modes, and their slopes are sensitive to the thickness deviations of the plates, which can be used to quantitatively evaluate the thickness deviations.

  14. Bilateral symmetry of the mastoid processes in jaw deformity cases with mandibular deviation

    International Nuclear Information System (INIS)

    We used three-dimensional computed tomography (3D-CT) to investigate differences in the amount of mandibular deviation and the position of the mastoid processes at the insertion of the sternocleidomastoid muscle in subjects who had jaw deformities with mandibular deviation. We measured the distance from the Frankfort horizontal (FH), frontal and sagittal median planes to the mastoid processes. We also measured mandibular deviation as the distance from the sagittal median plane to Me (Me deviation distance), the angle of the FH plane to Ag line (vertical mandibular deviation angle), as well as the angle of the sagittal median plane to Ag line (axial mandibular deviation angle). We calculated the ratios of the vertical, anteroposterior and lateral distances from each plane to the bilateral mastoid processes. Significant correlation was found between the Me deviation distance and the ratio of the vertical distance to the bilateral mastoid processes. Significant correlation was also found between the axial mandibular deviation angle and the ratio of the vertical distance to the bilateral mastoid processes. Our results suggest that in patients with jaw deformities there is a correlation between deviation of the mandible from the body axis and the position of the mastoid processes. (author)

  15. Deviation from van't Hoff dependence in RP-LC induced by tautomeric interconversion observed for four compounds.

    Science.gov (United States)

    Galaon, Toma; David, Victor

    2011-06-01

    The most encountered situations in reversed-phase liquid chromatography for temperature dependence of retention are those obeying the linear equation known as the van't Hoff plot. When studying compounds that are involved in structural modifications, it is likely that the temperature dependences of their retention factors do not follow this rule. It is the aim of this paper to report some particular cases when compounds involved in tautomeric interconversion have a different retention behavior with temperature: a deviation from the linearity of ln k on 1/T, or, in certain temperature ranges, temperature increase leading to a retention increase. Examples of compounds exhibiting deviation from the van't Hoff temperature dependence are piroxicam, drotaverine, vincamine, and epivincamine. A simple thermodynamic model relying on tautomeric equilibria in mobile phase is proposed for these compounds, which gives a polynomial dependence between ln k and 1/T. PMID:21538875

  16. Deviations from the Gutenberg–Richter law on account of a random distribution of block sizes

    Energy Technology Data Exchange (ETDEWEB)

    Sibiryakov, B. P., E-mail: sibiryakovbp@ipgg.sbras.ru [Trofimuk Institute of Oil and Gas Geology and Geophysics SB RAS, Novosibirsk, 630090 (Russian Federation); Novosibirsk State University, Novosibirsk, 630090 (Russian Federation)

    2015-10-27

    This paper studies properties of a continuum with structure. The characteristic size of the structure governs the fact that difference relations are nonautomatically transformed into differential ones. It is impossible to consider an infinitesimal volume of a body, to which the major conservation laws could be applied, because the minimum representative volume of the body must contain at least a few elementary microstructures. The corresponding equations of motion are equations of infinite order, solutions of which include, along with usual sound waves, unusual waves with abnormally low velocities without a lower limit. It is shown that in such media weak perturbations can increase or decrease outside the limits. The number of complex roots of the corresponding dispersion equation, which can be interpreted as the number of unstable solutions, depends on the specific surface of cracks and is an almost linear dependence on a logarithmic scale, as in the seismological Gutenberg–Richter law. If the distance between one pore (crack) to another one is a random value with some distribution, we must write another dispersion equation and examine different scenarios depending on the statistical characteristics of the random distribution. In this case, there are sufficient deviations from the Gutenberg–Richter law and this theoretical result corresponds to some field and laboratory observations.

  17. Singularities in large deviation functionals of bulk-driven transport models

    International Nuclear Information System (INIS)

    The large deviation functional of the density field in the weakly asymmetric simple exclusion process with open boundaries is studied using a combination of numerical and analytical methods. For appropriate boundary conditions and bulk drives the functional becomes non-differentiable. This happens at configurations where instead of a single history, several distinct histories of equal weight dominate their dynamical evolution. As we show, the structure of the singularities can be rather rich. We identify numerically analogues in configuration space of first order phase transition lines ending at a critical point and analogues of tricritical points. First order lines terminating at a critical point appear when there are configurations whose dynamical evolution is controlled by two distinct histories with equal weight. Tricritical point analogues emerge when there are configurations whose dynamical evolution is controlled by three distinct histories with equal weight. A numerical analysis suggests that the structure of the singularities can be described by a Landau like theory. Finally, in the limit of an infinite bulk bias we identify singularities which arise from a competition of s histories, with s arbitrary. In this case we show that all the singularities can be described by a Landau like theory. (paper)

  18. Deviations from the Gutenberg–Richter law on account of a random distribution of block sizes

    International Nuclear Information System (INIS)

    This paper studies properties of a continuum with structure. The characteristic size of the structure governs the fact that difference relations are nonautomatically transformed into differential ones. It is impossible to consider an infinitesimal volume of a body, to which the major conservation laws could be applied, because the minimum representative volume of the body must contain at least a few elementary microstructures. The corresponding equations of motion are equations of infinite order, solutions of which include, along with usual sound waves, unusual waves with abnormally low velocities without a lower limit. It is shown that in such media weak perturbations can increase or decrease outside the limits. The number of complex roots of the corresponding dispersion equation, which can be interpreted as the number of unstable solutions, depends on the specific surface of cracks and is an almost linear dependence on a logarithmic scale, as in the seismological Gutenberg–Richter law. If the distance between one pore (crack) to another one is a random value with some distribution, we must write another dispersion equation and examine different scenarios depending on the statistical characteristics of the random distribution. In this case, there are sufficient deviations from the Gutenberg–Richter law and this theoretical result corresponds to some field and laboratory observations

  19. ESTIMATION OF ACCURACY CHARACTERISTICS OF THE AUTOMATED MEASUREMENT SYSTEM FOR CONTROL OF SPATIAL ANGULAR DEVIATIONS

    Directory of Open Access Journals (Sweden)

    G. A. Zvetkov

    2015-03-01

    Full Text Available The principles and methods of computer-aided measuring system using instruments of inertial navigation are presented. This allows more accurate measurement of angular deviation of installation sites for scientific equipment taking into account dynamics deviation of angle error. Enhanced functionality is achieved by additional measurement of azimuthal angle error.

  20. ESTIMATION OF ACCURACY CHARACTERISTICS OF THE AUTOMATED MEASUREMENT SYSTEM FOR CONTROL OF SPATIAL ANGULAR DEVIATIONS

    OpenAIRE

    G. A. Zvetkov; M. A. Egorov

    2015-01-01

    The principles and methods of computer-aided measuring system using instruments of inertial navigation are presented. This allows more accurate measurement of angular deviation of installation sites for scientific equipment taking into account dynamics deviation of angle error. Enhanced functionality is achieved by additional measurement of azimuthal angle error.

  1. Exchange rate uncertainty and deviations from purchasing power parity: Evidence from the G7 area

    OpenAIRE

    Arghyrou, Michael G.; Gregoriou, Andros; Pourpourides, Panayiotis M.

    2009-01-01

    Arghyrou, Gregoriou and Pourpourides (2009) argue that exchange rate uncertainty causes deviations from the law of one price. We test this hypothesis on aggregate data from the G7-area. We find that exchange rate uncertainty explains to a significant degree deviations from Purchasing Power Parity.

  2. Exchange rate uncertainty and deviations from Purchasing Power Parity: Evidence from the G7 area

    OpenAIRE

    Arghyrou, Michael G.; Gregoriou, Andros; Pourpourides, Panayiotis M.

    2009-01-01

    Arghyrou, Gregoriou and Pourpourides (2009) argue that exchange rate uncertainty causes deviations from the law of one price. We test this hypothesis on aggregate data from the G7-area. We find that exchange rate uncertainty explains to a significant degree deviations from Purchasing Power Parity.

  3. On the concentration of large deviations for fat tailed distributions, with application to financial data

    Science.gov (United States)

    Filiasi, Mario; Livan, Giacomo; Marsili, Matteo; Peressi, Maria; Vesselli, Erik; Zarinelli, Elia

    2014-09-01

    Large deviations for fat tailed distributions, i.e. those that decay slower than exponential, are not only relatively likely, but they also occur in a rather peculiar way where a finite fraction of the whole sample deviation is concentrated on a single variable. The regime of large deviations is separated from the regime of typical fluctuations by a phase transition where the symmetry between the points in the sample is spontaneously broken. For stochastic processes with a fat tailed microscopic noise, this implies that, while typical realizations are well described by a diffusion process with continuous sample paths, large deviation paths are typically discontinuous. For eigenvalues of random matrices with fat tailed distributed elements, a large deviation where the trace of the matrix is anomalously large concentrates on just a single eigenvalue, whereas in the thin tailed world the large deviation affects the whole distribution. These results find a natural application to finance. Since the price dynamics of financial stocks are characterized by fat tailed increments, large fluctuations in stock prices are expected to be realized by discrete jumps. Interestingly, we find that large excursions of prices are more likely realized by continuous drifts rather than by discontinuous jumps. Indeed, auto correlations suppress the concentration of large deviations. Financial covariance matrices also exhibit an anomalously large eigenvalue, the market mode, as compared to the prediction of random matrix theory. We show that this is explained by a large deviation with excess covariance rather than by one with excess volatility.

  4. Large Deviations for Empirical Measures of Not Necessarily Irreducible Countable Markov Chains with Arbitrary Initial Measures

    Institute of Scientific and Technical Information of China (English)

    Yi Wen JIANG; Li Ming WU

    2005-01-01

    All known results on large deviations of occupation measures of Markov processes are based on the assumption of (essential) irreducibility. In this paper we establish the weak* large deviation principle of occupation measures for any countable Markov chain with arbitrary initial measures. The new rate function that we obtain is not convex and depends on the initial measure, contrary to the (essentially) irreducible case.

  5. The single server queue and the storage model: Large deviations and fixed points

    Directory of Open Access Journals (Sweden)

    Moez Draief

    2006-04-01

    Full Text Available We consider the coupling of a single server queue and a storage model defined as a queue/store model. We establish that if the input variables, arrivals at the queue and store, satisfy large deviations principles and are linked through an exponential tilting, then the output variables (departures from each system satisfy large deviations principles with the same rate function.

  6. Determination of real machine-tool settings and minimization of real surface deviation by computerized inspection

    Science.gov (United States)

    Litvin, Faydor L.; Kuan, Chihping; Zhang, YI

    1991-01-01

    A numerical method is developed for the minimization of deviations of real tooth surfaces from the theoretical ones. The deviations are caused by errors of manufacturing, errors of installment of machine-tool settings and distortion of surfaces by heat-treatment. The deviations are determined by coordinate measurements of gear tooth surfaces. The minimization of deviations is based on the proper correction of initially applied machine-tool settings. The contents of accomplished research project cover the following topics: (1) Descriptions of the principle of coordinate measurements of gear tooth surfaces; (2) Deviation of theoretical tooth surfaces (with examples of surfaces of hypoid gears and references for spiral bevel gears); (3) Determination of the reference point and the grid; (4) Determination of the deviations of real tooth surfaces at the points of the grid; and (5) Determination of required corrections of machine-tool settings for minimization of deviations. The procedure for minimization of deviations is based on numerical solution of an overdetermined system of n linear equations in m unknowns (m much less than n ), where n is the number of points of measurements and m is the number of parameters of applied machine-tool settings to be corrected. The developed approach is illustrated with numerical examples.

  7. An Upper Bound on Standard Deviation as a Function of Range

    Science.gov (United States)

    Petocz, Peter

    2005-01-01

    This article disproves a conjecture that the ratio of the maximum standard deviation to the range of a set of data decreases as the number of data points increases. It also provides an alternative and more general approach for examining the standard deviation as a function of the range.

  8. Moderate Deviations for M-estimators in Linear Models with φ-mixing Errors

    Institute of Scientific and Technical Information of China (English)

    Jun FAN

    2012-01-01

    In this paper,the moderate deviations for the M-estimators of regression parameter in a linear model are obtained when the errors form a strictly stationary φ-mixing sequence.The results are applied to study many different types of M-estimators such as Huber's estimator,Lp-regression estimator,least squares estimator and least absolute deviation estimator.

  9. Large Deviations for Parameter Estimators of Some Time Inhomogeneous Diffusion Process

    Institute of Scientific and Technical Information of China (English)

    Shou Jiang ZHAO; Fu Qing GAO

    2011-01-01

    The goal of this paper is to study large deviations for estimator and score function of some time inhomogeneous diffusion process.Large deviation in the non-steepness case with explicit rate functions is obtained by using parameter-dependent change of measure.

  10. 7 CFR 1724.52 - Permitted deviations from RUS construction standards.

    Science.gov (United States)

    2010-01-01

    ...) and 1 CFR part 51. Copies of this publication may be obtained from the Raptor Research Foundation, Inc... 7 Agriculture 11 2010-01-01 2010-01-01 false Permitted deviations from RUS construction standards... POLICIES AND PROCEDURES Electric System Design § 1724.52 Permitted deviations from RUS...

  11. Urban scaling and its deviations: revealing the structure of wealth, innovation and crime across cities.

    Directory of Open Access Journals (Sweden)

    Luís M A Bettencourt

    Full Text Available With urban population increasing dramatically worldwide, cities are playing an increasingly critical role in human societies and the sustainability of the planet. An obstacle to effective policy is the lack of meaningful urban metrics based on a quantitative understanding of cities. Typically, linear per capita indicators are used to characterize and rank cities. However, these implicitly ignore the fundamental role of nonlinear agglomeration integral to the life history of cities. As such, per capita indicators conflate general nonlinear effects, common to all cities, with local dynamics, specific to each city, failing to provide direct measures of the impact of local events and policy. Agglomeration nonlinearities are explicitly manifested by the superlinear power law scaling of most urban socioeconomic indicators with population size, all with similar exponents (1.15. As a result larger cities are disproportionally the centers of innovation, wealth and crime, all to approximately the same degree. We use these general urban laws to develop new urban metrics that disentangle dynamics at different scales and provide true measures of local urban performance. New rankings of cities and a novel and simpler perspective on urban systems emerge. We find that local urban dynamics display long-term memory, so cities under or outperforming their size expectation maintain such (disadvantage for decades. Spatiotemporal correlation analyses reveal a novel functional taxonomy of U.S. metropolitan areas that is generally not organized geographically but based instead on common local economic models, innovation strategies and patterns of crime.

  12. Deformation behavior of A6063 tube with initial thickness deviation in free hydraulic bulging

    Institute of Scientific and Technical Information of China (English)

    YANG Lian-fa; GUO Cheng; DENG Yang

    2006-01-01

    Experiment on seamless tubes of aluminum alloy A6063 with initial thickness deviation of 0-20% was conducted through a free hydraulic bulging with tube ends free. The influence of initial thickness deviation on the cross-section profile, thickness distribution, maximum internal pressure and maximum radial expansion was investigated. FEM simulation was also performed in order to examine and help explaining the experimental results. The results indicate that the internal pressure and maximum internal pressure appear to be little influenced by the initial thickness deviation, and that the cross-section profile of the bulged tube changes diversely and can not be a perfect circle. The results also suggest that the increase in initial thickness deviation may lead to a remarkable decrease in maximum radial expansion, and a rapid increase in thickness deviation and the center eccentricity of the inner and outer profiles.

  13. A method for detecting alignment deviation on a thread-measuring instrument

    International Nuclear Information System (INIS)

    Alignment deviation is an important factor affecting measurement accuracy in screw thread measurement. It needs to be detected and controlled to ensure the accuracy of relative thread parameters. The influence on pitch diameter caused by the alignment deviations of workpiece and probe is analyzed in this paper. In order to detect and control the alignment deviation, a vision detection method for the probe tip points is proposed, which integrates the detection of corners and edges and the prediction of motion. Then the X-axial rotation deviation is calculated by tracking the tip points both up and down. The result of tests demonstrates that the detection accuracy of the X-axial rotation deviation is 0.0654° with the background changing during the probe movement. The repeatability of the test procedure is ±0.16%, which proves the detection method is adequately qualified for application. (paper)

  14. Statistical characterization of deviations from planned flight trajectories in air traffic management

    CERN Document Server

    Bongiorno, C; Lillo, F; Mantegna, R N; Miccichè, S

    2016-01-01

    Understanding the relation between planned and realized flight trajectories and the determinants of flight deviations is of great importance in air traffic management. In this paper we perform an in depth investigation of the statistical properties of planned and realized air traffic on the German airspace during a 28 day periods, corresponding to an AIRAC cycle. We find that realized trajectories are on average shorter than planned ones and this effect is stronger during night-time than daytime. Flights are more frequently deviated close to the departure airport and at a relatively large angle to destination. Moreover, the probability of a deviation is higher in low traffic phases. All these evidences indicate that deviations are mostly used by controllers to give directs to flights when traffic conditions allow it. Finally we introduce a new metric, termed difork, which is able to characterize navigation points according to the likelihood that a deviation occurs there. Difork allows to identify in a statist...

  15. On the relation between uncertainties of weighted frequency averages and the various types of Allan deviations

    CERN Document Server

    Benkler, Erik; Sterr, Uwe

    2015-01-01

    The power spectral density in Fourier frequency domain, and the different variants of the Allan deviation (ADEV) in dependence on the averaging time are well established tools to analyse the fluctuation properties and frequency instability of an oscillatory signal. It is often supposed that the statistical uncertainty of a measured average frequency is given by the ADEV at a well considered averaging time. However, this approach requires further mathematical justification and refinement, which has already been done regarding the original ADEV for certain noise types. Here we provide the necessary background to use the modified Allan deviation (modADEV) and other two-sample deviations to determine the uncertainty of weighted frequency averages. The type of two-sample deviation used to determine the uncertainty depends on the method used for determination of the average. We find that the modADEV, which is connected with $\\Lambda$-weighted averaging, and the two sample deviation associated to a linear phase regr...

  16. Large-deviation joint statistics of the finite-time Lyapunov spectrum in isotropic turbulence

    International Nuclear Information System (INIS)

    One of the hallmarks of turbulent flows is the chaotic behavior of fluid particle paths with exponentially growing separation among them while their distance does not exceed the viscous range. The maximal (positive) Lyapunov exponent represents the average strength of the exponential growth rate, while fluctuations in the rate of growth are characterized by the finite-time Lyapunov exponents (FTLEs). In the last decade or so, the notion of Lagrangian coherent structures (which are often computed using FTLEs) has gained attention as a tool for visualizing coherent trajectory patterns in a flow and distinguishing regions of the flow with different mixing properties. A quantitative statistical characterization of FTLEs can be accomplished using the statistical theory of large deviations, based on the so-called Cramér function. To obtain the Cramér function from data, we use both the method based on measuring moments and measuring histograms and introduce a finite-size correction to the histogram-based method. We generalize the existing univariate formalism to the joint distributions of the two FTLEs needed to fully specify the Lyapunov spectrum in 3D flows. The joint Cramér function of turbulence is measured from two direct numerical simulation datasets of isotropic turbulence. Results are compared with joint statistics of FTLEs computed using only the symmetric part of the velocity gradient tensor, as well as with joint statistics of instantaneous strain-rate eigenvalues. When using only the strain contribution of the velocity gradient, the maximal FTLE nearly doubles in magnitude, highlighting the role of rotation in de-correlating the fluid deformations along particle paths. We also extend the large-deviation theory to study the statistics of the ratio of FTLEs. The most likely ratio of the FTLEs λ1 : λ2 : λ3 is shown to be about 4:1:−5, compared to about 8:3:−11 when using only the strain-rate tensor for calculating fluid volume deformations. The results

  17. Large-deviation joint statistics of the finite-time Lyapunov spectrum in isotropic turbulence

    Energy Technology Data Exchange (ETDEWEB)

    Johnson, Perry L., E-mail: pjohns86@jhu.edu; Meneveau, Charles [Department of Mechanical Engineering and Center for Environmental and Applied Fluid Mechanics, The Johns Hopkins University, 3400 N. Charles Street, Baltimore, Maryland 21218 (United States)

    2015-08-15

    One of the hallmarks of turbulent flows is the chaotic behavior of fluid particle paths with exponentially growing separation among them while their distance does not exceed the viscous range. The maximal (positive) Lyapunov exponent represents the average strength of the exponential growth rate, while fluctuations in the rate of growth are characterized by the finite-time Lyapunov exponents (FTLEs). In the last decade or so, the notion of Lagrangian coherent structures (which are often computed using FTLEs) has gained attention as a tool for visualizing coherent trajectory patterns in a flow and distinguishing regions of the flow with different mixing properties. A quantitative statistical characterization of FTLEs can be accomplished using the statistical theory of large deviations, based on the so-called Cramér function. To obtain the Cramér function from data, we use both the method based on measuring moments and measuring histograms and introduce a finite-size correction to the histogram-based method. We generalize the existing univariate formalism to the joint distributions of the two FTLEs needed to fully specify the Lyapunov spectrum in 3D flows. The joint Cramér function of turbulence is measured from two direct numerical simulation datasets of isotropic turbulence. Results are compared with joint statistics of FTLEs computed using only the symmetric part of the velocity gradient tensor, as well as with joint statistics of instantaneous strain-rate eigenvalues. When using only the strain contribution of the velocity gradient, the maximal FTLE nearly doubles in magnitude, highlighting the role of rotation in de-correlating the fluid deformations along particle paths. We also extend the large-deviation theory to study the statistics of the ratio of FTLEs. The most likely ratio of the FTLEs λ{sub 1} : λ{sub 2} : λ{sub 3} is shown to be about 4:1:−5, compared to about 8:3:−11 when using only the strain-rate tensor for calculating fluid volume

  18. The Impact of Advanced Technologies on Treatment Deviations in Radiation Treatment Delivery

    International Nuclear Information System (INIS)

    Purpose: To assess the impact of new technologies on deviation rates in radiation therapy (RT). Methods and Materials: Treatment delivery deviations in RT were prospectively monitored during a time of technology upgrade. In January 2003, our department had three accelerators, none with 'modern' technologies (e.g., without multileaf collimators [MLC]). In 2003 to 2004, we upgraded to five new accelerators, four with MLC, and associated advanced capabilities. The deviation rates among patients treated on 'high-technology' versus 'low-technology' machines (defined as those with vs. without MLC) were compared over time using the two-tailed Fisher's exact test. Results: In 2003, there was no significant difference between the deviation rate in the 'high-technology' versus 'low-technology' groups (0.16% vs. 0.11%, p = 0.45). In 2005 to 2006, the deviation rate for the 'high-technology' groups was lower than the 'low-technology' (0.083% vs. 0.21%, p = 0.009). This difference was caused by a decline in deviations on the 'high-technology' machines over time (p = 0.053), as well as an unexpected trend toward an increase in deviations over time on the 'low-technology' machines (p = 0.15). Conclusions: Advances in RT delivery systems appear to reduce the rate of treatment deviations. Deviation rates on 'high-technology' machines with MLC decline over time, suggesting a learning curve after the introduction of new technologies. Associated with the adoption of 'high-technology' was an unexpected increase in the deviation rate with 'low-technology' approaches, which may reflect an over-reliance on tools inherent to 'high-technology' machines. With the introduction of new technologies, continued diligence is needed to ensure that staff remain proficient with 'low-technology' approaches

  19. Analysis of some fuel characteristics deviations and their influence over WWER-440 fuel cycle design

    International Nuclear Information System (INIS)

    The aim of this study is to estimate the influence of some deviations in WWER-440 fuel assemblies (FA) characteristics upon fuel core design. A large number of different fresh fuel assemblies with enrichment of 3.5 t % are examined related to the enrichment, mass of initial metal Uranium and assembly shroud thickness. Infinite multiplication factor (Kinf) in fuel assembly has been calculated by HELIOS spectral code for basic assembly and for different FA with deviation of a single parameter. The effects from single parameter deviation (enrichment) and from two parameter deviations (enrichment and wall thickness) on the neutron-physics characteristics of the core are estimated for different fuel assemblies. Relatively week burnup dependence on Kinf is observed as result of deviation in the enrichment of the fuel and in the wall thickness of the assembly. An assessment of a FA single and two parameter deviations effects on design fuel cycle duration and relative power peaking factor is also considers in the paper. As a final conclusion can be settled that the maximum relative shortness of fuel cycle can be observed in the case of two FA parameters deviations

  20. Differential processing of melodic, rhythmic and simple tone deviations in musicians--an MEG study.

    Science.gov (United States)

    Lappe, Claudia; Lappe, Markus; Pantev, Christo

    2016-01-01

    Rhythm and melody are two basic characteristics of music. Performing musicians have to pay attention to both, and avoid errors in either aspect of their performance. To investigate the neural processes involved in detecting melodic and rhythmic errors from auditory input we tested musicians on both kinds of deviations in a mismatch negativity (MMN) design. We found that MMN responses to a rhythmic deviation occurred at shorter latencies than MMN responses to a melodic deviation. Beamformer source analysis showed that the melodic deviation activated superior temporal, inferior frontal and superior frontal areas whereas the activation pattern of the rhythmic deviation focused more strongly on inferior and superior parietal areas, in addition to superior temporal cortex. Activation in the supplementary motor area occurred for both types of deviations. We also recorded responses to similar pitch and tempo deviations in a simple, non-musical repetitive tone pattern. In this case, there was no latency difference between the MMNs and cortical activation was smaller and mostly limited to auditory cortex. The results suggest that prediction and error detection of musical stimuli in trained musicians involve a broad cortical network and that rhythmic and melodic errors are processed in partially different cortical streams. PMID:26436712

  1. Deviations from the Schmidt-Kennicutt relations during early galaxy evolution

    CERN Document Server

    Papadopoulos, Padelis P

    2010-01-01

    We utilize detailed time-varying models of the coupled evolution of stars and the HI, H_2, and CO-bright H_2 gas phases in galaxy-sized numerical simulations to explore the evolution of gas-rich and/or metal-poor systems, expected to be numerous in the Early Universe. The inclusion of the CO-bright H_2 gas phase, and the realistic rendering of star formation as an H_2-regulated process (and the new feedback processes that this entails) allows the most realistic tracking of strongly evolving galaxies, and much better comparison with observations. We find that while galaxies eventually settle into states conforming to Schmidt-Kennicutt (S-K) relations, significant and systematic deviations of their star formation rates (SFRs) from the latter occur, especially pronounced and prolonged for ... ...This indicates potentially serious limitations of (S-K)-type relations as reliable sub-grid elements of star formation physics in simulations of structure formation in the Early Universe. We anticipate that galaxies with...

  2. A contribution to large deviations for heavy-tailed random sums

    Institute of Scientific and Technical Information of China (English)

    SU; Chun

    2001-01-01

    [1] Nagaev, A. V., Integral limit theorems for large deviations when Cramer's condition is not fulfilled I, II, Theory Prob. Appl., 1969, 14: 51-64, 193-208.[2] Nagaev, A. V., Limit theorems for large deviations where Cramer's conditions are violated (In Russian), Izv. Akad. Nauk USSR Ser., Fiz-Mat Nauk., 1969, 7: 17.[3] Heyde, C. C., A contribution to the theory of large deviations for sums of independent random variables, Z. Wahrscheinlichkeitsth, 1967, 7: 303.[4] Heyde, C. C., On large deviation probabilities for sums of random variables which are not attracted to the normal law, Ann. Math. Statist., 1967, 38: 1575.[5] Heyde, C. C., On large deviation probabilities in the case of attraction to a nonnormal stable law, Sanky, 1968, 30: 253.[6] Nagaev, S. V., Large deviations for sums of independent random variables, in Sixth Prague Conf. on Information Theory, Random Processes and Statistical Decision Functions, Prague: Academic, 1973, 657674.[7] Nagaev, S. V., Large deviations of sums of independent random variables, Ann. Prob., 1979, 7: 745.[8] Embrechts, P., Klüppelberg, C., Mikosch, T., Modelling Extremal Events for Insurance and Finance, Berlin-Heidelberg: Springer-Verlag, 1997.[9] Cline, D. B. H., Hsing, T., Large deviation probabilities for sums and maxima of random variables with heavy or subexponential tails, Preprint, Texas A&M University, 1991.[10] Klüppelberg, C., Mikosch, T., Large deviations of heavy-tailed random sums with applications to insurance and finance, J. Appl. Prob., 1997, 34: 293.

  3. Effect of tool centreline deviation on the mechanical properties of friction stir welded DH36 steel

    International Nuclear Information System (INIS)

    Highlights: • FSW of DH36 was tolerant to a centreline defect induced by tool deviation. • High strength welds up to 2.5 mm centreline tool deviation with ductile PM fracture. • Critical tolerance to centreline tool deviation at 4 mm with ductile weld metal fracture. • Brittle fracture above 4 mm deviation led to significant reduction in yield strength. - Abstract: Friction stir welding of steel has gone through recent tool and optimisation developments allowing the process to be considered as a technically superior alternative to fusion welding. This study expanded the scientific foundation of friction stir welding of DH36 steel to analyse the effect on weld quality when the rotating tool increasingly deviates away from the weld centreline. A centreline defect was deliberately but gradually introduced along the length of the weld seam. The tolerance to tool deviation towards both the advancing side and the retreating side of the weld was measured in terms of the transverse yield strength. Three discrete fracture modes were observed in transverse tensile specimen. Up to a tool deviation of 2.5 mm, ductile fracture in the parent material was observed and there was not a significant reduction in the yield strength of the weldment. The critical tool deviation occurred at 4 mm, where transverse tensile specimens fractured in a high strength ductile mode in the weld metal. Brittle behaviour in specimens above the 4 mm tolerance level resulted in a significant decrease in the transverse yield strength. Fracture within the weld metal was directed along the boundary between the heat-affected zone and thermo-mechanically affected zone, attributable to an abrupt change in the grain size and complexity of the two weld zones at this boundary. Friction stir welding of DH36 was found to be a tolerant joining process to the centreline deviation of the rotating tool

  4. Understanding of cluster size deviation by measuring the dimensions of cluster jet from conical nozzles

    Science.gov (United States)

    Chen, Guanglong; Geng, Xiaotao; Xu, Hongxia; Mi, Yiming; Zhang, Xiuli; Wang, Lili; Kim, Dong Eon

    2013-03-01

    This work aims to understand the cluster size deviation from the prediction by an existing scaling law for conical nozzles. The dimensions of cluster jet at different heights above a nozzle along the direction of gas flow are measured. This study indicates that the dimension of cluster jet is underestimated in the existing scaling law and this under-estimation leads to the over-estimation of the equivalent diameter of conical nozzle. Thus the underestimation of the dimension of cluster jet may be one of possible factors responsible for the cluster size deviation (the degree of the deviation depends on details of cluster jet).

  5. Method for solving fully fuzzy linear programming problems using deviation degree measure

    Institute of Scientific and Technical Information of China (English)

    Haifang Cheng; Weilai Huang; Jianhu Cai

    2013-01-01

    A new ful y fuzzy linear programming (FFLP) prob-lem with fuzzy equality constraints is discussed. Using deviation degree measures, the FFLP problem is transformed into a crispδ-parametric linear programming (LP) problem. Giving the value of deviation degree in each constraint, the δ-fuzzy optimal so-lution of the FFLP problem can be obtained by solving this LP problem. An algorithm is also proposed to find a balance-fuzzy optimal solution between two goals in conflict: to improve the va-lues of the objective function and to decrease the values of the deviation degrees. A numerical example is solved to il ustrate the proposed method.

  6. Deviations of the glass transition temperature in amorphous conjugated polymer thin films

    Science.gov (United States)

    Liu, Dan; Osuna Orozco, Rodrigo; Wang, Tao

    2013-08-01

    The deviations of the glass transition temperature (Tg) in thin films of an amorphous conjugated polymer poly(9,9-dioctylfluorene-co-N-(4-butylphenyl)diphenylamine) (TFB) are reported. Monotonic and nonmonotonic Tg deviations are observed in TFB thin films supported on Si-SiOx and poly(3,4-ethylenedioxythiophene) poly(styrenesulfonate) (PEDOT:PSS), respectively. A three-layer model is developed to fit both monotonic and nonmonotonic Tg deviations in these films. A 5-nm PEDOT:PSS capping layer was not found to be effective to remove the free-surface effect in Si-SiOx supported TFB films.

  7. Level 1 quenched large deviation principle for random walk in dynamic random environment

    CERN Document Server

    Drewitz, David Campos Alexander

    2011-01-01

    Consider a random walk on a continuous time-dependent random environment on the hiper-cubic lattice. Recently, Rassoul-Agha, Seppalainen and Yilmaz proved a general large deviation principle under mild ergodicity assumptions on the random environment for such a random walk, establishing first a level 2 and 3 large deviation principle. Here we present an alternative short proof of the level 1 large deviations under mild ergodicity assumptions on the environment, which provides the existence and convexity of the rate function, in the continuous time case. Our methods are based on the use of sub-additive ergodic theorem as presented by Varadhan in 2003.

  8. A large deviations approach to limit theory for heavy-tailed time series

    DEFF Research Database (Denmark)

    Mikosch, Thomas Valentin; Wintenberger, Olivier

    2016-01-01

    In this paper we propagate a large deviations approach for proving limit theory for (generally) multivariate time series with heavy tails. We make this notion precise by introducing regularly varying time series. We provide general large deviation results for functionals acting on a sample path and...... vanishing in some neighborhood of the origin. We study a variety of such functionals, including large deviations of random walks, their suprema, the ruin functional, and further derive weak limit theory for maxima, point processes, cluster functionals and the tail empirical process. One of the main results...

  9. Analysis of Road Base Uniformity via the Deviation of Modulus of Asphalt Mixtures

    Institute of Scientific and Technical Information of China (English)

    ZHI Yufeng; ZHANG Xiaoning

    2007-01-01

    The modulus deviation of base material calculated from the data of falling weight deflectometer (FWD) was used to evaluate the uniformity of road base so as to reflect the construction quality. Four parameters,the repeatability standard deviation of the data in the same driveway, the reproducibility standard deviation of the data in the different driveway, the consistency statistics value of the data in the different driveway, and the consistency statistics value of the data in the same driveway, were introduced for the construction uniformity analysis. The experimental result shows that the materials modulus calculated from FWD has a highly correlative relationship with the uniformity of road base.

  10. The standard deviation method: data analysis by classical means and by neural networks

    International Nuclear Information System (INIS)

    The Standard Deviation Method is a method for determining particle size which can be used, for instance, to determine air-bubble sizes in a fermentation bio-reactor. The transmission coefficient of an ultrasound beam through a gassy liquid is measured repetitively. Due to the displacements and random positions of the bubbles, the measurements show a scatter whose standard deviation is dependent on the bubble-size. The precise relationship between the measured standard deviation, the transmission and the particle size has been obtained from a set of computer-simulated data. (author) 9 figs., 5 refs

  11. Distance-based standard deviation analysis method for line width roughness data

    Science.gov (United States)

    Bzik, Thomas J.; Rao, Madhukar B.; Zhang, Peng

    2005-05-01

    Linewidth roughness (LWR) is a major challenge for 90nm node and below. As feature sizes decrease, the reliable measurement, statistical comparison and interpretation of LWR data become increasingly important. The reliability of all LWR statistical analysis methods are strongly impacted by the architecture of LWR data being analyzed. Some of the key structural aspects of the collected data include: measurement box size, distance between neighboring measurements and whether measurement boxes have been "stitched" together for analysis. Additionally, the true nature of underlying line width variation, including both cyclical and non-cyclical trends, impacts how reliable a given interpretation will be. Current statistical methodologies for linewidth data are oriented at estimation of the frequency and scale of cyclical variation in linewidth components. Fourier analysis is traditionally applied for this purpose. Such analyses assume both that there is a cyclical component (e.g., sinusoidal) or components in the data to be modeled, as well as implicitly assuming a Gaussian error distribution for the linewidth variation that remains after modeling. The assumption that Fourier analysis is appropriate for LWR data often not met in practice by the LWR data undergoing analysis. A more model-independent approach, distance-based standard deviations, is proposed for use as part of an LWR statistical analysis methodology. It is based on the calculation of local standard deviations of linewidth for all possible distances between measured points. This methodology permits the statistical comparison of linewidth roughness over any distance of interest and makes efficient use of all data for a given measurement box length. It can determine the minimum measurement box length required to capture all linewidth variation. In addition, the method can confirm the validity of line stitching to increase measurement box size, and locate the sources of variance in the overall LWR value (e

  12. The C-terminal domain of human grp94 protects the catalytic subunit of protein kinase CK2 (CK2alpha) against thermal aggregation. Role of disulfide bonds

    DEFF Research Database (Denmark)

    Roher, N; Miró, F; Boldyreff, B; Llorens, F; Plana, M; Issinger, O G; Itarte, E

    2001-01-01

    The C-terminal domain (residues 518-803) of the 94 kDa glucose regulated protein (grp94) was expressed in Escherichia coli as a fusion protein with a His6-N-terminal tag (grp94-CT). This truncated form of grp94 formed dimers and oligomers that could be dissociated into monomers by treatment with...

  13. A kind of multi-step method for measuring pitch deviation of a gear

    International Nuclear Information System (INIS)

    The inspection of a gear's pitch deviation is one of the most important tests on gears. The specifications of gears are usually assessed using gear measuring instruments or coordinate measuring machines. The National Metrology Institute of Japan and the Physikalisch-Technische Bundesanstalt proposed the closure technique for measuring gear pitch deviation, which can eliminate the systematic errors in pitch measurement, and can also be used for calibrating pitch standards. The reference to a closure technique—a kind of multi-step method for measuring pitch deviation—is introduced, of which the measurement process is relatively simple, and systematic errors can also be eliminated. Two gears’ pitch deviations were measured by adopting the closure technique and multi-step method, respectively. The result shows that the multi-step method can also be used for highly accurate measurements of pitch deviation. (paper)

  14. Large deviations for Hilbert space valued Wiener processes: a sequence space approach

    OpenAIRE

    Andresen, Andreas; Imkeller, Peter; Perkowski, Nicolas

    2012-01-01

    Ciesielski's isomorphism between the space of alpha-H\\"older continuous functions and the space of bounded sequences is used to give an alternative proof of the large deviation principle for Wiener processes with values in Hilbert space.

  15. AUTOMATED METERING SYSTEM FOR CONTROL OF THE SPATIAL-ANGULAR DEVIATIONS

    OpenAIRE

    G. A. Zvetkov

    2015-01-01

    Automatic metering system using devices and instruments for inertial navigation has been elaborated. The system allows more accurate measurement of angular deviation of installation sites for scientific equipment. Enhanced functionality is achieved by additional measuring of the azimuth angle error.

  16. Moderate deviations and functional limits for random processes with stationary and independent increments

    Institute of Scientific and Technical Information of China (English)

    GAO; Fuqing

    2006-01-01

    We first give a functional moderate deviation principle for random processes with stationary and independent increments under the Ledoux's condition.Then we apply the result to laws of the iterated logarithm.

  17. 41 CFR 102-33.10 - May we request approval to deviate from these rules?

    Science.gov (United States)

    2010-07-01

    ...,” revised May 22, 1992. You should consult with GSA's Aircraft Management Policy Division (MTA) before you request a deviation. Also, you should fax a copy of your letter of request to MTA at 202-501-6742 at...

  18. 40 CFR 60.2220 - What must I include in the deviation report?

    Science.gov (United States)

    2010-07-01

    ... Commercial and Industrial Solid Waste Incineration Units for Which Construction Is Commenced After November... § 60.2215, for any pollutant or parameter that deviated from the emission limitations or...

  19. 40 CFR 62.14740 - What must I include in the deviation report?

    Science.gov (United States)

    2010-07-01

    ... POLLUTANTS Federal Plan Requirements for Commercial and Industrial Solid Waste Incineration Units That... include in the deviation report? In each report required under § 62.14735, for any pollutant or...

  20. 40 CFR 60.2780 - What must I include in the deviation report?

    Science.gov (United States)

    2010-07-01

    ... Compliance Times for Commercial and Industrial Solid Waste Incineration Units that Commenced Construction On... the deviation report? In each report required under § 60.2775, for any pollutant or parameter...

  1. Stochastic differential equations with non-lipschitz coefficients: I. Pathwise uniqueness and large deviation

    OpenAIRE

    Fang, Shizan; Zhang, Tusheng

    2003-01-01

    We study a class of stochastic differential equations with non-Lipschitzian coefficients.A unique strong solution is obtained and a large deviation principle of Freidln-Wentzell type has been established.

  2. 40 CFR 60.2958 - What must I include in the deviation report?

    Science.gov (United States)

    2010-07-01

    ... Qualification Recordkeeping and Reporting § 60.2958 What must I include in the deviation report? In each report... incidents (other than downtime associated with zero, span, and other routine calibration checks)....

  3. Radiographic study on maxillary sinus development and nasal septum deviation in cleft palate patient

    International Nuclear Information System (INIS)

    This study was designed to investigate the effects of the maxillary sinus development and nasal septum deviation on diseases of maxillary sinus with cleft palate. The materials was 152 cephalometric Waters' projections consist of 76 cleft patients and 76 normal subjects. The results were as follows: 1. The disease of maxillary sinus was present in 49% of a cleft group and 14% of a control group, and prevalent in cleft side. 2. It showed no statistically significant difference in size of the maxillary sinus in cleft palate patients compared to the control population and in the cleft side to the noncleft side (p<0.05). 3. Nasal septum deviation was more severe in the cleft patient its average value was 3.55mm, compared to the control group, 0.99 mm (p<0.01) and 77% of the deviated nasal septum was deviated to the cleft side.

  4. Large Deviations for Stochastic Partial Differential Equations Driven by a Poisson Random Measure

    CERN Document Server

    Budhiraja, Amarjit; Dupuis, Paul

    2012-01-01

    Stochastic partial differential equations driven by Poisson random measures (PRM) have been proposed as models for many different physical systems, where they are viewed as a refinement of a corresponding noiseless partial differential equations (PDE). A systematic framework for the study of probabilities of deviations of the stochastic PDE from the deterministic PDE is through the theory of large deviations. The goal of this work is to develop the large deviation theory for small Poisson noise perturbations of a general class of deterministic infinite dimensional models. Although the analogous questions for finite dimensional systems have been well studied, there are currently no general results in the infinite dimensional setting. This is in part due to the fact that in this setting solutions may have little spatial regularity, and thus classical approximation methods for large deviation analysis become intractable. The approach taken here, which is based on a variational representation for nonnegative func...

  5. CALCULATION ALGORITHM FOR STUDYING EFFORTS IN THE 4R SPHERICAL QUADRILATERAL MECHANISMS BECAUSE OF TECHNICAL DEVIATIONS

    Directory of Open Access Journals (Sweden)

    Ion BULAC

    2013-05-01

    Full Text Available Due to technical deviations, in the elements of the 4R spatial spherical mechanism appear efforts thatadditionally loads the mechanism, efforts that can be determined with the calculation algorithm that will bepresented in this paper

  6. Observation and Analysis of Affinity Law Deviations through Tested Performance of Liquefied Gas Reaction Turbines

    OpenAIRE

    Sarah D. Alison-Youel

    2008-01-01

    Liquefied gas reaction turbines are subject to the hydraulic affinity laws. Particularly for liquefied hydrocarbon gas-driven turbines, deviations from the affinity laws are encountered. In the case of reaction turbines, where the geometry is fixed, the affinity law relationships between flow, head, and rotational speed are relevant. Field experience confirms that the affinity law relationships are adequate, but that the predictions made also tend to deviate from real turbine performance. Par...

  7. Cost Contingency as the Standard Deviation of the Cost Estimate for Cost Engineering

    OpenAIRE

    Geoffrey Rothwell

    2004-01-01

    Traditional cost contingency estimation relies heavily on expert judgment based on various cost-engineering standards. This paper compares project stages, accuracy ranges, and cost contingencies recommended by the Association for the Advancement of Cost Engineering International and the Electric Power Research Institute. It shows that current guidelines are consistent with contingencies equal to the standard deviation of the cost estimate. It suggests how this standard deviation can be derive...

  8. Left-Deviating Prism Adaptation in Left Neglect Patient: Reflexions on a Negative Result

    OpenAIRE

    Jacques Luauté; Sophie Jacquin-Courtois; Jacinta O'Shea; Laure Christophe; Gilles Rode; Dominique Boisson; Yves Rossetti

    2012-01-01

    Adaptation to right-deviating prisms is a promising intervention for the rehabilitation of patients with left spatial neglect. In order to test the lateral specificity of prism adaptation on left neglect, the present study evaluated the effect of left-deviating prism on straight-ahead pointing movements and on several classical neuropsychological tests in a group of five right brain-damaged patients with left spatial neglect. A group of healthy subjects was also included for comparison purpos...

  9. Model for crystallization kinetics: Deviations from Kolmogorov-Johnson-Mehl-Avrami kinetics

    OpenAIRE

    Castro, Mario; Domínguez-Adame Acosta, Francisco; Sánchez, A; Rodriguez, T.

    1999-01-01

    We propose a simple and versatile model to understand the deviations from the well-known Kolmogorov-Johnson-Mehl-Avrami kinetics theory found in metal recrystallization and amorphous semiconductor crystallization. We analyze the kinetics of the transformation and the grain-size distribution of the product material, finding a good overall agreement between our model and available experimental data. The information so obtained could help to relate the mentioned experimental deviations due to pr...

  10. Large deviations for multidimensional state-dependent shot-noise processes

    OpenAIRE

    Budhiraja, Amarjit; Nyquist, Pierre

    2015-01-01

    Shot-noise processes are used in applied probability to model a variety of physical systems in, for example, teletraffic theory, insurance and risk theory, and in the engineering sciences. In this paper we prove a large deviation principle for the sample-paths of a general class of multidimensional state-dependent Poisson shot-noise processes. The result covers previously known large deviation results for one-dimensional state-independent shot-noise processes with light tail...

  11. Finite-time deviations from exponential decay in the Weisskopf-Wigner model of spontaneous emission

    International Nuclear Information System (INIS)

    For the first time to the authors' knowledge, a mathematically rigorous method is used for treating finite-time deviations from the exponential decay in the case of spontaneous Lyman-α transition in a two-level hydrogenic atom. In the so-called Weisskopf-Wigner model (where the rotating-wave approximation is implied), finite-time deviations with a rigorous validity range, based on accurate error estimations, are derived. (orig.)

  12. Large deviations in physics the legacy of the law of large numbers

    CERN Document Server

    Cecconi, Fabio; Cencini, Massimo; Puglisi, Andrea; Vergni, Davide

    2014-01-01

    This book reviews the basic ideas of the Law of Large Numbers with its consequences to the deterministic world and the issue of ergodicity. Applications of Large Deviations and their outcomes to Physics are surveyed. The book covers topics encompassing ergodicity and its breaking and the modern applications of Large deviations to equilibrium and non-equilibrium statistical physics, disordered and chaotic systems, and turbulence.

  13. Deviation Among Technology Reviews: An Informative Enrichment of Technology Evolution Theory for Marketing

    OpenAIRE

    Sood, Ashish; Stremersch, Stefan

    2010-01-01

    textabstractUnderstanding technological change is of critical importance to marketers, as it bears new markets, new brands, new customers, and new market leaders. This paper examines the deviation among reviews of a technology’s performance and its consequences for inferences on technology evolution patterns. The basic premise of the current paper is that technology evolution literature, while highly relevant, is misguided in that it ignores potential deviation among technology reviews. Using...

  14. Standard deviation of the intersection point for two statistically uncertain curves

    International Nuclear Information System (INIS)

    A method of estimating the standard deviation of the intersection point of two curves characterized by some statistical uncertainties is presented. The method is based on a computer simulation of deviations of the curves. An example of application of the method to estimate the accuracy of the thermal neutron macroscopic absorption cross-section measurement is described. Computer program in FORTRAN language is enclosed. (author)

  15. A new procedure for monitoring the range and standard deviation of a quality characteristic

    OpenAIRE

    Kiani, Mehdi; Panaretos, John; Psarakis, Stelios

    2008-01-01

    The Shewhart and the Bonferroni-adjustment R and S chart are usually applied to monitor the range and the standard deviation of a quality characteristic. These charts are used to recognize the process variability of a quality characteristic. The control limits of these charts are constructed on the assumption that the population follows approximately the normal distribution with the standard deviation parameter known or unknown. In this article, we establish two new charts based approximately...

  16. Analyzing Vegetation Change in an Elephant-Impacted Landscape Using the Moving Standard Deviation Index

    OpenAIRE

    Timothy J. Fullman; Erin L. Bunting

    2014-01-01

    Northern Botswana is influenced by various socio-ecological drivers of landscape change. The African elephant (Loxodonta africana) is one of the leading sources of landscape shifts in this region. Developing the ability to assess elephant impacts on savanna vegetation is important to promote effective management strategies. The Moving Standard Deviation Index (MSDI) applies a standard deviation calculation to remote sensing imagery to assess degradation of vegetation. Used previously for asse...

  17. Standard deviation of absolute and differential pressure fluctuations in fluidized beds of group B particles

    OpenAIRE

    Sobrino, Celia; Sánchez-Delgado, Sergio; García-Hernando, Néstor; Vega, Mercedes

    2008-01-01

    This work describes the behaviour of the standard deviation of pressure fluctuations in fluidized beds for group B particles in the bubbling regime. An empirical–theoretical function, which depends on the gas velocity, is proposed for predicting the pressure signal fluctuations, and the corresponding values of are calculated. The differences in the standard deviation of pressure fluctuations obtained for absolute or differential sensors are analyzed and compared to experimental values corresp...

  18. Sparsity hypotheses for robust estimation of the noise standard deviation in various signal processing applications.

    OpenAIRE

    Pastor, Dominique; Socheleau, Franc¸ois-Xavier; Aïssa-El-Bey, Abdeldjalil

    2009-01-01

    This paper concerns the problem of estimating the noise standard deviation in different signal processing applications. The presented estimator derives from recent results in robust statistics based on sparsity hypotheses. More specifically, these theoretical results make the link between a standard problem in robust statistics (the estimation of the noise standard deviation in presence of outliers) and sparsity hypotheses. The estimator derived from these theoretical results can be applied t...

  19. Model Evaluation the Effect of Size, Shape and Surface Condition of Apatite Nanocrystals on the Deviation of Ca / P ratio from stoichiometric

    Directory of Open Access Journals (Sweden)

    S.N. Danilchenko

    2014-04-01

    Full Text Available The causes of Са / Р ratio deviation in biological apatites from stoichiometric one were discussed. By the simple model evaluation Са / Р ratio was shown to deviate from stoichiometric one because of small sizes of crystals, and peculiarities in chemical composition of their facets. Also size effect is noted to be unsufficient for explanation of wide variations of Са / Р ratio in biological apatites. It proves the significant contribution of lattice isovalent and heterovalent substitution into variability of Са / Р ratio. The problem of revealing the predominant causes of Са / Р deviation from stoichiometric one and estimation of their relative contribution is related to determination of the functional role of the structural imperfections in biological apatites of different origin.

  20. A strategy to objectively evaluate the necessity of correcting detected target deviations in image guided radiotherapy

    International Nuclear Information System (INIS)

    Image guided radiotherapy technologies are being increasingly utilized in the treatment of various cancers. These technologies have enhanced the ability to detect temporal and spatial deviations of the target volume relative to planned radiation beams. Correcting these detected deviations may, in principle, improve the accuracy of dose delivery to the target. However, in many situations, a clinical decision has to be made as to whether it is necessary to correct some of the deviations since the relevant dosimetric impact may or may not be significant, and the corresponding corrective action may be either impractical or time consuming. Ideally this decision should be based on objective and reproducible criteria rather than subjective judgment. In this study, a strategy is proposed for the objective evaluation of the necessity of deviation correction during the treatment verification process. At the treatment stage, without any alteration from the planned beams, the treatment beams should provide the desired dose coverage to the geometric volume identical to the planning target volume (PTV). Given this fact, the planned dose distribution and PTV geometry were used to compute the dose coverage and PTV enclosure of the clinical target volume (CTV) that was detected from imaging during the treatment setup verification. The spatial differences between the detected CTV and the planning CTV are essentially the target deviations. The extent of the PTV enclosure of the detected CTV as well as its dose coverage were used as criteria to evaluate the necessity of correcting any of the target deviations. This strategy, in principle, should be applicable to any type of target deviations, including both target deformable and positional changes and should be independent of how the deviations are detected. The proposed strategy was used on two clinical prostate cancer cases. In both cases, gold markers were implanted inside the prostate for the purpose of treatment setup

  1. PSYCHOLOGICAL MECHANISMS OF FORMATION OF DEVIATIONS IN THE PERIOD OF PREPARATION FOR MOTHERHOOD

    Directory of Open Access Journals (Sweden)

    S. A. Moreva

    2015-01-01

    Full Text Available The article presents a social-psychological indicators of stress, coping mechanisms, rigidity and psychological component gestational dominant as risk factors predisposing to deviations in the context of preparedness for motherhood, marked psychological characteristics of pregnant women main group.Material and methods. The study was conducted on the basis of obstetric clinics SSMU, prenatal maternity hospital number 4 and the Centre for Medical Prevention (Cabinet crisis pregnancy. Total was attended by 52 women aged 18 to 44 years, at different stages of pregnancy – from 5 to 39 weeks. Methodological apparatus consisted of a structured interview questionnaire “Medical and social data of the pregnant woman” methodology for determining the stress and social adaptation of Holmes and Rage (1967, a questionnaire of coping R. Lazarus and S. Folkman (WCQ, 1988, Tomsk questionnaire rigidity G.V. Zalewski (TORZ, 1987, test on pregnant I.V. Dobryakova (1996. Data processing was carried out using statistical methods Spearman rank correlation coefficient, nonparametric Mann–Whitney U and Kruskal–Wallis H and φ * – Fisher's angular transformation.Results. Significant psychological factors that may influence the formation of readiness for motherhood among women of the main group can be considered an unplanned pregnancy (65%, and also its not gelendost (35%.Studies of stress resistance was detected in pregnant women from the main group low stress levels (88%, and only 12% have a high degree. Most of the women from the сomparison group reverse the situation 64% have a high degree of stress, this suggests that the presence of previously state miscarriage is for this group of stress.On the formation of readiness for motherhood affects not only the presence of stressful situations, butalso how the woman in their lives. Using U-test Mann–Whitney, were statistically significant differences were observed among the main group and сomparison group in

  2. Deviations outside the acceptance limits in the IAEA/WHO TLD audits for radiotherapy hospitals

    International Nuclear Information System (INIS)

    The main purpose of the IAEA/WHO TLD postal dose audit programme for dosimetry in radiotherapy is to provide an independent verification of the dose delivered by treatment machines in radiotherapy hospitals. The results of the TLD audit are considered acceptable if the relative deviation between the participant's stated dose and the TLD determined dose is within ±5%. The goal of this note is to draw the attention of participants of the TLD programme to some of the common reasons for deviations outside the acceptance limits. Armed with this knowledge, other participants may avoid similar problems in the future. The analysis of deviations presented here is based on the results of TLD audits of the calibration of approximately 1000 Co-60 beams and 600 high-energy X-ray beams performed in the period 1996-2001. A total of 259 deviations outside the ±5% limits have been detected, including 204 deviations for Co-60 beams (20% of all Co-60 beams checked) and 55 for high-energy X-ray beams (10% of all X-ray beams checked). It is worth mentioning that the percentage of large deviations (beyond 10%) is also higher for Co-60 beams than for high-energy X-ray beams. Some problems may be caused by obsolete dosimetry equipment or poor treatment machine conditions. Other problems may be due to insufficient training of staff working in radiotherapy. The clinical relevance of severe TLD deviations detected in the audit programme was confirmed in many cases, but, fortunately, not all-poor dosimetric results reflect deficiencies in the calibration of clinical beams or machine faults. Sometime it happens, that the TLDs are irradiated with an incorrect dose due to misunderstanding of the instructions on how to perform the TLD irradiation. Such dosimetry errors would have no direct impact on actual dose delivered to a patient

  3. Identification of characteristic model-observation deviations for coupled data assimilation

    Science.gov (United States)

    Geppert, Gernot; Ament, Felix

    2016-04-01

    Exchange fluxes of water and energy between the land surface and the atmosphere lead to the propagation of errors from one model component to the other. Data assimilation can correct such errors in two ways, either by correcting the observed state directly or by changing the state that caused the exchange fluxes. The land surface, for example, strongly determines the temperature in the atmospheric boundary layer. The assimilation of boundary layer temperature can then correct the model's temperature directly. Or the assimilation of boundary layer temperature can act on the model's land surface state. A coupled data assimilation system should exploit these links and enable the second type of correction across model components. Data assimilation relies on instantaneous deviations between model forecasts and observations. Such instantaneous deviations are often hard to relate to errors in specific model components. Therefore, model verification builds on more sophisticated statistics such as long-term biases, gradients, phase shifts, or conditional differences that yield characteristic differences between model forecasts and observations. Compared to the instantaneous deviations in data assimilation, the characteristic deviations in model verification are more closely linked to errors in specific model components. Consequently, such characteristic deviations can potentially be used for data assimilation across model components where instantaneous deviations are not sufficiently informative. As a first step towards data assimilation with characteristic deviations (here named fingerprints), we use ensembles of simulations with the Icosahedral Non-hydrostatic (ICON) model to identify applicable statistics of observable variables. We run ICON in a large eddy simulation configuration on a small, limited domain and systematically perturb soil and land-surface parameters and states to produce the ensembles. Subsequently, we test statistics of boundary layer observables to

  4. Compensation method for the alignment angle error of a gear axis in profile deviation measurement

    International Nuclear Information System (INIS)

    In the precision measurement of involute helical gears, the alignment angle error of a gear axis, which was caused by the assembly error of a gear measuring machine, will affect the measurement accuracy of profile deviation. A model of the involute helical gear is established under the condition that the alignment angle error of the gear axis exists. Based on the measurement theory of profile deviation, without changing the initial measurement method and data process of the gear measuring machine, a compensation method is proposed for the alignment angle error of the gear axis that is included in profile deviation measurement results. Using this method, the alignment angle error of the gear axis can be compensated for precisely. Some experiments that compare the residual alignment angle error of a gear axis after compensation for the initial alignment angle error were performed to verify the accuracy and feasibility of this method. Experimental results show that the residual alignment angle error of a gear axis included in the profile deviation measurement results is decreased by more than 85% after compensation, and this compensation method significantly improves the measurement accuracy of the profile deviation of involute helical gear. (paper)

  5. Compensation method for the alignment angle error in pitch deviation measurement

    Science.gov (United States)

    Liu, Yongsheng; Fang, Suping; Wang, Huiyi; Taguchi, Tetsuya; Takeda, Ryohei

    2016-05-01

    When measuring the tooth flank of an involute helical gear by gear measuring center (GMC), the alignment angle error of a gear axis, which was caused by the assembly error and manufacturing error of the GMC, will affect the measurement accuracy of pitch deviation of the gear tooth flank. Based on the model of the involute helical gear and the tooth flank measurement theory, a method is proposed to compensate the alignment angle error that is included in the measurement results of pitch deviation, without changing the initial measurement method of the GMC. Simulation experiments are done to verify the compensation method and the results show that after compensation, the alignment angle error of the gear axis included in measurement results of pitch deviation declines significantly, more than 90% of the alignment angle errors are compensated, and the residual alignment angle errors in pitch deviation measurement results are less than 0.1 μm. It shows that the proposed method can improve the measurement accuracy of the GMC when measuring the pitch deviation of involute helical gear.

  6. Efficiency and large deviations in time-asymmetric stochastic heat engines

    International Nuclear Information System (INIS)

    In a stochastic heat engine driven by a cyclic non-equilibrium protocol, fluctuations in work and heat give rise to a fluctuating efficiency. Using computer simulations and tools from large deviation theory, we have examined these fluctuations in detail for a model two-state engine. We find in general that the form of efficiency probability distributions is similar to those described by Verley et al (2014 Nat. Commun. 5 4721), in particular featuring a local minimum in the long-time limit. In contrast to the time-symmetric engine protocols studied previously, however, this minimum need not occur at the value characteristic of a reversible Carnot engine. Furthermore, while the local minimum may reside at the global minimum of a large deviation rate function, it does not generally correspond to the least likely efficiency measured over finite time. We introduce a general approximation for the finite-time efficiency distribution, P(η), based on large deviation statistics of work and heat, that remains very accurate even when P(η) deviates significantly from its large deviation form. (fast track communication)

  7. Deviating measurements in radiation protection. Legal assessment of deviations in radiation protection measurements; Messabweichungen im Strahlenschutz. Rechtliche Bewertung von Abweichungen bei Strahlenschutzmessungen

    Energy Technology Data Exchange (ETDEWEB)

    Hoegl, A.

    1996-07-01

    This study investigates how, from a legal point of view, deviations in radiation protection measurements should be treated in comparisons between measured results and limits stipulated by nuclear legislation or goods transport regulations. A case-by-case distinction is proposed which is based on the legal concequences of the respective measurement. Commentaries on nuclear law contain no references to the legal assessment of deviating measurements in radiation protection. The examples quoted in legal commentaries on civil and criminal proceedings of the way in which errors made in measurements for speed control and determinations of the alcohol content in the blood are to be taken into account, and a commentary on ozone legislation, are examined for analogies with radiation protection measurements. Leading cases in the nuclear field are evaluated in the light of the requirements applying in case of deviations in measurements. The final section summarizes the most important findings and conclusions. (orig.) [Deutsch] Es wird untersucht, wie aus rechtlicher Sicht Messabweichungen bei Strahlenschutzmessungen zu beruecksichtigen sind, wenn Messergebnisse mit Grenzwerten des Atomrechts oder Gueterverkehrsrechts verglichen werden. Hierzu wird eine Fallunterscheidung vorgeschlagen, die von den jeweiligen Rechtsfolgen eine Messung ausgeht. In Kommentaren zum Atomrecht konnten keine Hinweise fuer die rechtliche Bewertung von Messabweichungen bei Strahlenschutzmessungen gefunden werden. Die in Rechtskommentaren zur Zivil- und Strafprozessordnung enthaltenen Beispiele der Fehlerberuecksichtigung bei Messungen zur Geschwindigkeitsueberwachung und Blutalkoholbestimmung sowie ein Kommentar zum Ozongesetz wurden auf Analogien zu Strahlenschutzmessungen untersucht. Gerichtliche Grundsatzentscheidungen aus dem Bereich der Kerntechnik werden im Hinblick auf Anforderungen bei Messabweichungen ausgewertet. Im letzten Abschnitt sind die wichtigsten Ergebnisse und Schlussfolgerungen

  8. Subfamily logos: visualization of sequence deviations at alignment positions with high information content

    Directory of Open Access Journals (Sweden)

    Beitz Eric

    2006-06-01

    Full Text Available Abstract Background Recognition of relevant sequence deviations can be valuable for elucidating functional differences between protein subfamilies. Interesting residues at highly conserved positions can then be mutated and experimentally analyzed. However, identification of such sites is tedious because automated approaches are scarce. Results Subfamily logos visualize subfamily-specific sequence deviations. The display is similar to classical sequence logos but extends into the negative range. Positive, upright characters correspond to residues which are characteristic for the subfamily, negative, upside-down characters to residues typical for the remaining sequences. The symbol height is adjusted to the information content of the alignment position. Residues which are conserved throughout do not appear. Conclusion Subfamily logos provide an intuitive display of relevant sequence deviations. The method has proven to be valid using a set of 135 aligned aquaporin sequences in which established subfamily-specific positions were readily identified by the algorithm.

  9. Geodesic Deviation Equation in $\\Lambda$CDM $f(T,\\mathcal{T})$ gravity

    CERN Document Server

    Ganiou, M G; Houndjo, M J S; Tossa, J

    2016-01-01

    The geodesic deviation equation has been investigated in the framework of $f(T,\\mathcal{T})$ gravity, where $T$ denotes the torsion and $\\mathcal{T}$ is the trace of the energy-momentum tensor, respectively. The FRW metric is assumed and the geodesic deviation equation has been established following the General Relativity approach in the first hand and secondly, by a direct method using the modified Friedmann equations. Via fundamental observers and null vector fields with FRW background, we have generalized the Raychaudhuri equation and the Mattig relation in $f(T,\\mathcal{T})$ gravity. Furthermore, we have numerically solved the geodesic deviation equation for null vector fields by considering a particular form of $f(T,\\mathcal{T})$ which induces interesting results susceptible to be tested with observational data.

  10. Analysis of Deviations in an Agent and Ontology-Based Dialogue Management System

    Institute of Scientific and Technical Information of China (English)

    2006-01-01

    Algorithms of detecting dialogue deviations from a dialogue topic in an agent and ontology-based dialogue management system(AODMS) are proposed. In AODMS, agents and ontologies are introduced to represent domain knowledge. And general algorithms that model dialogue phenomena in different domains can be realized in that complex relationships between knowledge in different domains can be described by ontologies. An evaluation of the dialogue management system with deviation-judging algorithms on 736 utterances shows that the AODMS is able to talk about the given topic consistently and answer 86.6% of the utterances, while only 72.1% of the utterances can be responded correctly without deviation-judging module.

  11. Two-scale large deviations for chemical reaction kinetics through second quantization path integral

    Science.gov (United States)

    Li, Tiejun; Lin, Feng

    2016-04-01

    Motivated by the study of rare events for a typical genetic switching model in systems biology, in this paper we aim to establish the general two-scale large deviations for chemical reaction systems. We build a formal approach to explicitly obtain the large deviation rate functionals for the considered two-scale processes based upon the second quantization path integral technique. We get three important types of large deviation results when the underlying two timescales are in three different regimes. This is realized by singular perturbation analysis to the rate functionals obtained by the path integral. We find that the three regimes possess the same deterministic mean-field limit but completely different chemical Langevin approximations. The obtained results are natural extensions of the classical large volume limit for chemical reactions. We also discuss its implication on the single-molecule Michaelis-Menten kinetics. Our framework and results can be applied to understand general multi-scale systems including diffusion processes.

  12. Definition of resulting angle of the deviation after the passage of neutrons through the crystal

    International Nuclear Information System (INIS)

    The present paper is dedicated to the consideration of passage of neutrons in the crystal. The expression for intensity distribution is obtained by the method of the multiple scattering theories. The received results are applied to calculation angle of the deviation of neutrons by nucleus of the crystal. Here is shown that at the large angle of deviation, the intensity of distribution decreases with reduction of angle much more slowly than till Gaussian law. The received expression for the angle of the dviation allows defining of the impulse of the neutron

  13. Relative entropy: Free energy associated with equilibrium fluctuations and nonequilibrium deviations

    Science.gov (United States)

    Qian, Hong

    2001-04-01

    Using a one-dimensional macromolecule in aqueous solution as an illustration, we demonstrate that the relative entropy from information theory, ∑kpk ln(pk/p*k), has a natural role in the energetics of equilibrium and nonequilibrium conformational fluctuations of the single molecule. It is identified as the free energy difference associated with a fluctuating density in equilibrium, and is associated with the distribution deviate from the equilibrium in nonequilibrium relaxation. This result can be generalized to any other isothermal macromolecular system using the mathematical theories of large deviations and Markov processes, and at the same time provides the well-known mathematical results with interesting physical interpretations.

  14. Design and analysis of control charts for standard deviation with estimated parameters

    OpenAIRE

    Schoonhoven, M.; Riaz, M.; Does, R.J.M.M.

    2011-01-01

    This paper concerns the design and analysis of the standard deviation control chart with estimated limits. We consider an extensive range of statistics to estimate the in-control standard deviation (Phase I) and design the control chart for real-time process monitoring (Phase II) by determining the factors for the control limits. The Phase II performance of the design schemes is assessed when the Phase I data are uncontaminated and normally distributed as well as when the Phase I data are con...

  15. Correcting Multi-focus Images via Simple Standard Deviation for Image Fusion

    OpenAIRE

    Jassim, Firas A.

    2013-01-01

    Image fusion is one of the recent trends in image registration which is an essential field of image processing. The basic principle of this paper is to fuse multi-focus images using simple statistical standard deviation. Firstly, the simple standard deviation for the k-by-k window inside each of the multi-focus images was computed. The contribution in this paper came from the idea that the focused part inside an image had high details rather than the unfocused part. Hence, the dispersion betw...

  16. Quantitative evaluation of standard deviations of group velocity dispersion in optical fibre using parametric amplification

    DEFF Research Database (Denmark)

    Rishøj, Lars Søgaard; Svane, Ask Sebastian; Lund-Hansen, Toke; Rottwitt, Karsten

    2014-01-01

    A numerical model for parametric amplifiers, which include stochastic variations of the group velocity dispersion (GVD), is presented. The impact on the gain is investigated, both with respect to the magnitude of the variations and by the effect caused by changing the wavelength of the pump. It i...... demonstrated that the described model is able to predict the experimental results and thereby provide a quantitative evaluation of the standard deviation of the GVD. For the investigated fibre, a standard deviation of 0.01 ps/(nm km) was found....

  17. The Standard Deviation of Life-Length, Retirement Incentives, and Optimal Pension Design

    OpenAIRE

    Aronsson, Thomas; Blomquist, Sören

    2010-01-01

    In this paper, we consider how the retirement age as well as a tax financed pension system ought to respond to a change in the standard deviation of the length of life. In a first best framework, where a benevolent government exercises perfect control over the individuals' labor supply and retirement-decisions, the results show that a decrease in the standard deviation of life-length leads to an increase in the optimal retirement age and vice versa, if the preferences for 'the number of years...

  18. Adjusting Winning-Percentage Standard Deviations and a Measure of Competitive Balance for Home Advantage

    OpenAIRE

    Trandel Gregory A; Maxcy Joel G

    2011-01-01

    One measure of sports league competitive balance uses a ratio: the standard deviation of team winning percentages is divided by the so-called ideal standard deviation, which assumes a game between evenly-skilled teams is equally likely to be won by either team. In fact, a team is more likely to win when playing at home than when playing on the road. The extent of this advantage differs across sports leagues. Home advantage reduces the variability of season-long team records. Ignoring home adv...

  19. Set standard deviation, repeatability and offset of absolute gravimeter A10-008

    Science.gov (United States)

    Schmerge, D.; Francis, O.

    2006-01-01

    The set standard deviation, repeatability and offset of absolute gravimeter A10-008 were assessed at the Walferdange Underground Laboratory for Geodynamics (WULG) in Luxembourg. Analysis of the data indicates that the instrument performed within the specifications of the manufacturer. For A10-008, the average set standard deviation was (1.6 0.6) ??Gal (1Gal ??? 1 cm s -2), the average repeatability was (2.9 1.5) ??Gal, and the average offset compared to absolute gravimeter FG5-216 was (3.2 3.5) ??Gal. ?? 2006 BIPM and IOP Publishing Ltd.

  20. Fixed pattern deviations in Si pixel detectors measured using the Medipix 1 readout chip

    CERN Document Server

    Tlustos, L; Davidson, D; Heijne, Erik H M; Mikulec, B

    2003-01-01

    Dopant fluctuations and other defects in silicon wafers can lead to systematic errors in several parameters in particle or single-photon detection. In imaging applications non-uniformities in sensors or readout give rise to fixed pattern image noise and degradation of achievable spatial resolution for a given flux. High granularity pixel detectors offer the possibility to investigate local properties of the detector material on a microscopic scale. In this paper, we study fixed pattern detection fluctuations and detector inhomogeneities using the Medipix 1 readout chip. Low-frequency fixed pattern signal deviations due to dopant inhomogeneities can be separated from high-frequency deviations.

  1. Maxillary palatal ramp prosthesis: A prosthodontic solution to manage mandibular deviation following surgery

    Directory of Open Access Journals (Sweden)

    Sampa Ray (Bhattacharya

    2015-01-01

    Full Text Available Mandibular resection following surgical treatment for neoplastic lesions of the oral cavity leads to numerous complications including altered mandibular movements, disfigurement, difficult in swallowing, impaired speech and articulation, and deviation of the mandible towards the resected site. Various prosthetic methods are employed to reduce or minimize mandibular deviation and improve and restore the lost functions and esthetic, like maxillomandibular fixation, implant supported prosthesis, removable mandibular guide flange prosthesis, and palatal based guidance restoration. This clinical report describes the rehabilitation of a patient following segmental mandibulectomy using palatal ramp prosthesis.

  2. Control of the multiclass G/G/1 queue in the moderate deviation regime

    CERN Document Server

    Atar, Rami

    2012-01-01

    A multi-class single-server system with general service time distributions is studied in a moderate deviation heavy traffic regime. In the scaling limit, an optimal control problem associated with the model is shown to be governed by a differential game, that can be explicitly solved. While the characterization of the limit by a differential game is akin to results at the large deviation scale, the analysis of the problem is closely related to the much studied area of control in heavy traffic at the diffusion scale.

  3. Quenched large deviations for multidimensional random walk in random environment: a variational formula

    CERN Document Server

    Rosenbluth, Jeffrey M

    2008-01-01

    We take the point of view of the particle in a multidimensional nearest neighbor random walk in random environment (RWRE). We prove a quenched large deviation principle and derive a variational formula for the quenched rate function. Most of the previous results in this area rely on the subadditive ergodic theorem. We employ a different technique which is based on a minimax theorem. Large deviation principles for RWRE have been proven for i.i.d. nestling environments subject to a moment condition and for ergodic uniformly elliptic environments. We assume only that the environment is ergodic and the transition probabilities satisfy a moment condition.

  4. Measurement based simulation of microscope deviations for evaluation of stitching algorithms for the extension of Fourier-based alignment

    Science.gov (United States)

    Engelke, Florian; Kästner, Markus; Reithmeier, Eduard

    2013-05-01

    Image stitching is a technique used to measure large surface areas with high resolution while maintaining a large field of view. We work on improving data fusion by stitching in the field of microscopic analysis of technical surfaces for structures and roughness. Guidance errors and imaging errors such as noise cause problems for seamless image fusion of technical surfaces. The optical imaging errors of 3D Microscopes, such as confocal microscopes and white light interferometers, as well as the guidance errors of their automated positioning systems have been measured to create a software to simulate automated measurements of known surfaces with specific deviations to test new stitching algorithms. We measured and incorporated radial image distortion, interferometer reference mirror shape deviations, statistical noise, drift of the positional axis, on-axis-accuracy and repeatability of the used positioning stages and misalignment of the CCD-Chip with respect to the axes of motion. We used the resulting simulation of the measurement process to test a new image registration technique that allows for the use of correlation of images by fast fourier transform for small overlaps between single measurements.

  5. Enzyme activity deviates due to spatial and temporal temperature profiles in commercial microtiter plate readers.

    Science.gov (United States)

    Grosch, Jan-Hendrik; Sieben, Michaela; Lattermann, Clemens; Kauffmann, Kira; Büchs, Jochen; Spieß, Antje C

    2016-03-01

    Microtiter plates (MTP) and automatized techniques are increasingly applied in the field of biotechnology. However, the susceptibility of MTPs to edge effects such as thermal gradients can lead to high variation of measured enzyme activities. In an effort to enhance experimental reliability, to quantify, and to minimize instrument-caused deviations in enzyme kinetics between two MTP-readers, we comprehensively quantified temperature distribution in 96-well MTPs. We demonstrated the robust application of the absorbance dye cresol red as easily applicable temperature indicator in cuvettes and MTPs and determined its accuracy to ±0.16°C. We then quantified temperature distributions in 96-well MTPs revealing temperature deviations over single MTP of up to 2.2°C and different patterns in two commercial devices (BioTek Synergy 4 and Synergy Mx). The obtained liquid temperature was shown to be substantially controlled by evaporation. The temperature-induced enzyme activity variation within MTPs amounted to about 20 %. Activity deviations between MTPs and to those in cuvettes were determined to 40 % due to deviations from the set temperature in MTPs. In conclusion, we propose a better control of experimental conditions in MTPs or alternative experimental systems for reliable determination of kinetic parameters for bioprocess development. PMID:26709721

  6. Deviations of the distributions of seismic energies from the Gutenberg-Richter law

    CERN Document Server

    Pisarenko, V; Rodkin, M

    2003-01-01

    A new non-parametric statistic is introduced for the characterization of deviations from power laws. It is tested on the distribution of seismic energies given by the Gutenberg-Richter law. Based on the two first statistical log-moments, it evaluates quantitatively the deviations of the distribution of scalar seismic moments from a power-like (Pareto) law. This statistic is close to zero for the Pareto law with arbitrary power index, and deviates from zero for any non-Pareto distribution. A version of this statistic for discrete distribution of quantified magnitudes is also given. A methodology based on this statistics consisting in scanning the lower threshold for earthquake energies provides an explicit visualization of deviations from the Pareto law, surpassing in sensitivity the standard Hill estimator or other known techniques. This new statistical technique has been applied to shallow earthquakes (h < 70 km) both in subduction zones and in mid-ocean ridge zones (using the Harvard catalog of seismic m...

  7. Electrocardiographic precordial ST-segment deviations and the risk of cardiovascular death

    DEFF Research Database (Denmark)

    Rasmussen, Peter Vibe; Nielsen, Jonas Bille; Pietersen, Adrian;

    2014-01-01

    computerized analysis of ECGs from 285 194 persons, we evaluated the association between precordial ST-segment deviations and the risk of CVD. All data on medication, comorbidity, and outcomes were retrieved from Danish registries. After a median follow-up period of 5.8 years, there were 6679 cardiovascular...

  8. Existence of piecewise continuous mild solutions for impulsive functional differential equations with iterated deviating arguments

    Directory of Open Access Journals (Sweden)

    Pradeep Kumar

    2013-10-01

    Full Text Available The objective of this article is to prove the existence of piecewise continuous mild solutions to impulsive functional differential equation with iterated deviating arguments in a Banach space. The results are obtained by using the theory of analytic semigroups and fixed point theorems.

  9. Solutions to quasi-linear differential equations with iterated deviating arguments

    Directory of Open Access Journals (Sweden)

    Rajib Haloi

    2014-12-01

    Full Text Available We establish sufficient conditions for the existence and uniqueness of solutions to quasi-linear differential equations with iterated deviating arguments, complex Banach space. The results are obtained by using the semigroup theory for parabolic equations and fixed point theorems. The main results are illustrated by an example.

  10. Deviations from Desired Age at Marriage: Mental Health Differences across Marital Status

    Science.gov (United States)

    Carlson, Daniel L.

    2012-01-01

    Although several factors condition mental health differences between married and never-married adults, given recent increases in marriage delay and permanent singlehood, one modifying factor--deviation from desired age at marriage--has yet to be examined. Using data from the National Longitudinal Survey of Youth 1979 (N = 7,277), the author tested…

  11. AUTOMATED METERING SYSTEM FOR CONTROL OF THE SPATIAL-ANGULAR DEVIATIONS

    Directory of Open Access Journals (Sweden)

    G. A. Zvetkov

    2012-01-01

    Full Text Available Automatic metering system using devices and instruments for inertial navigation has been elaborated. The system allows more accurate measurement of angular deviation of installation sites for scientific equipment. Enhanced functionality is achieved by additional measuring of the azimuth angle error.

  12. Deviations of the lepton mapping matrix from the Harrison-Perkins-Scott form

    Institute of Scientific and Technical Information of China (English)

    R.Friedberg; T.D.Lee

    2010-01-01

    We propose a simple set of hypotheses governing the deviations of the leptonic mapping matrix from the Harrison-Perkins-Scott(HPS)form.These deviations are supposed to arise entirely from a perturbation of the mass matrix in the charged lepton sector.The perturbing matrix is assumed to be purely imaginary(thus maximally T-violating)and to have a strength in energy scale no greater(but perhaps smaller)than the muon mass.As we shall show,it then follows that the absolute value of the mapping matrix elements pertaining to the tan lepton deviate by no more than O((mμ/mτ)2)≈3.5 × 10-3 from their HPS values.Assuming that(mμ/mτ)2 can be neglected,we derive two simple constraints on the four parameters θ12,θ23,θ31,and δ of the mapping matrix.These constraints are independent of the details of the imaginary T-violating perturbation of the charged lepton mass matrix.We also show that the e and μ parts of the mapping matrix have a definite form governed by two parameters a and β; any deviation of order mμ/mτ can be accommodated by adjusting these two parameters.

  13. Analysis on the deviation of feeder pipe ultrasonic thickness-measuring data

    International Nuclear Information System (INIS)

    This paper is an analysis on the large deviation of feeder ultrasonic thickness-measuring data in Qinshan NPP III, through which the influence of the inner surface of thin wall carbon steel pipe on ultrasonic thickness measurement accuracy is verified and a principle for selection of a thickness measuring probe for thin wall carbon steel pipe with rough inner surface is introduced. (author)

  14. The weekly measurement deviations of indoor radon concentration from the annual arithmetic mean

    International Nuclear Information System (INIS)

    The difference between weekly measurements and the annual arithmetic mean of radon concentration CRn,Indoor was studied in the Czech Republic. The deviations were analysed for 1537 weekly measurements which were consecutively obtained in 29 rooms over a period of 1 year and the annual arithmetic mean was calculated for each particular room. The relationship of the deviations to three meteorological parameters (i.e. outside temperature, atmospheric pressure, and weekly rainfall) and to the sequential number of a calendar week was studied. The effect of atmospheric pressure and weekly rainfall was not significant. The deviation between a weekly measurement and the annual arithmetic mean depended significantly on outside weekly average temperatures. If the average outside weekly temperature was below 10 deg. C, the radon concentration was systematically higher than that of the annual arithmetic mean. The deviation variability was lower up to a temperature of 10 deg. C. If the weekly average outdoor temperature was higher than 10 deg. C, the uncertainty of a weekly measurement of radon concentration was also higher. (author)

  15. MUSiC - An Automated Scan for Deviations between Data and Monte Carlo Simulation

    International Nuclear Information System (INIS)

    A model independent analysis approach is presented, systematically scanning the data for deviations from the standard model Monte Carlo expectation. Such an analysis can contribute to the understanding of the CMS detector and the tuning of event generators. The approach is sensitive to a variety of models of new physics, including those not yet thought of.

  16. Stress Analysis of the Ceramics Head with Micro and Macro Shape Deviations of the Contact Areas

    Czech Academy of Sciences Publication Activity Database

    Fuis, Vladimír; Hlavoň, Pavel

    Prague : Czech Society of Biomechanics Charles Univerzity in Prague, 2008, s. 1-2. ISBN 978-80-01-04163-5. [Human Biomechanics 2008. Praha (CZ), 29.09.2008-01.10.2008] Institutional research plan: CEZ:AV0Z20760514 Keywords : hip joint endoprosthesis * shape deviations Subject RIV: BO - Biophysics

  17. MICRO AND MACRO SHAPE DEVIATIONS OF THE CONTACT AREAS OF THE HIP JOINT ENDOPROSTHESIS

    Czech Academy of Sciences Publication Activity Database

    Fuis, Vladimír; Houfek, Martin; Janíček, P.

    Adelaide : University of Adelaide, 2008 - (Denier, J.; Finn, M.; Mattner, T.), s. 1-2 ISBN 978-0-9805142-0-9. [XXII International Congress of Theoretical and Applied Mechanics. Adelaide (AU), 25.08.2008-29.08.2008] Institutional research plan: CEZ:AV0Z20760514 Keywords : shape deviations * ceramics * hip joint endoprosthesis Subject RIV: BO - Biophysics

  18. Large deviations for stationary measures of stochastic nonlinear wave equation with smooth white noise

    OpenAIRE

    Martirosyan, Davit

    2015-01-01

    We prove the Freidlin-Wentzell type large deviations principle for the family of stationary measures of stochastic nonlinear wave (NLW) equation with white noise. We do not assume that the limiting equation possesses a unique equilibrium and do not impose roughness on the noise. This allows to provide the first such result in the PDE setting.

  19. A rare case of minimal deviation adenocarcinoma of the uterine cervix in a renal transplant recipient.

    LENUS (Irish Health Repository)

    Fanning, D M

    2009-02-03

    INTRODUCTION: We report the first described case of minimal deviation adenocarcinoma of the uterine cervix in the setting of a female renal cadaveric transplant recipient. MATERIALS AND METHODS: A retrospective review of this clinical case was performed. CONCLUSION: This rare cancer represents only about 1% of all cervical adenocarcinoma.

  20. A rare case of minimal deviation adenocarcinoma of the uterine cervix in a renal transplant recipient.

    LENUS (Irish Health Repository)

    Fanning, D M

    2012-02-01

    INTRODUCTION: We report the first described case of minimal deviation adenocarcinoma of the uterine cervix in the setting of a female renal cadaveric transplant recipient. MATERIALS AND METHODS: A retrospective review of this clinical case was performed. CONCLUSION: This rare cancer represents only about 1% of all cervical adenocarcinoma.

  1. EXISTENCE OF PERIODIC SOLUTION TO HIGHER ORDER DIFFERENTIAL EQUATIONS WITH DEVIATING ARGUMENT

    Institute of Scientific and Technical Information of China (English)

    2009-01-01

    In this paper,using the coincidence degree theory of Mawhin,we investigate the existence of periodic solutions to higher order differential equations with deviating argument. Some new results on the existence of periodic solutions to the equations are obtained. In addition,we give an example to illustrate the main results.

  2. Possible deviations from (V-A) charged currents: precise measurement of muon decay parameters

    International Nuclear Information System (INIS)

    This short review examines the experimental limits on possible deviations from (V-A) charged weak currents, as would occur at some mass scale, for example, in manifestly left-right-symmetric electro-weak theories. Both present and anticipated limits are considered, emphasizing muon-decay experiments but including other experimental input where convenient

  3. LARGE DEVIATION FOR THE EMPIRICAL CORRELATION COEFFICIENT OF TWO GAUSSIAN RANDOM VARIABLES

    Institute of Scientific and Technical Information of China (English)

    Shen Si

    2007-01-01

    In this article, the author obtains the large deviation principles for the empirical correlation coefficient of two Gaussian random variables X and Y. Especially, when considering two independent Gaussian random variables X, Y with the means EX, EY(both known), wherein the author gives two kinds of different proofs and gets the same results.

  4. Limitations of the relative standard deviation of win percentages for measuring competitive balance in sports leagues

    OpenAIRE

    P. Dorian Owen

    2009-01-01

    The relative standard deviation of win percentages, the most widely used measure of within-season competitive balance, has an upper bound which is very sensitive to variation in the numbers of teams and games played. Taking into account this upper bound provides additional insight into comparisons of competitive balance across leagues or over time.

  5. Estimating crop water stress with standard deviation of canopy temperature in thermal imagery

    Science.gov (United States)

    A new crop water stress index using standard deviation of canopy temperature as an input was developed to monitor crop water status. In this study, thermal imagery was taken from maize under various levels of deficit irrigation treatments in different crop growing stages. The Expectation-Maximizatio...

  6. On the Linear Relation between the Mean and the Standard Deviation of a Response Time Distribution

    Science.gov (United States)

    Wagenmakers, Eric-Jan; Brown, Scott

    2007-01-01

    Although it is generally accepted that the spread of a response time (RT) distribution increases with the mean, the precise nature of this relation remains relatively unexplored. The authors show that in several descriptive RT distributions, the standard deviation increases linearly with the mean. Results from a wide range of tasks from different…

  7. Large deviations for the Fleming-Viot process with neutral mutation and selection

    OpenAIRE

    Dawson, Donald; Feng, Shui

    1998-01-01

    Large deviation principles are established for the Fleming-Viot processes with neutral mutation and selection, and the corresponding equilibrium measures as the sampling rate goes to 0. All results are first proved for the finite allele model, and then generalized, through the projective limit technique, to the infinite allele model. Explicit expressions are obtained for the rate functions.

  8. Large Deviations for Empirical Process of Mean-Field Interacting Particle System with Unbounded Jumps

    OpenAIRE

    Feng, Shui

    1994-01-01

    A large deviation system is established for the empirical processes of a mean-field interacting particle system with unbounded jump rates under assumptions that are satisfied by many interesting models including the first and the second Schlogl models. The action functional obtained has a form that is very useful for applications.

  9. Determination of the relations governing the evolution of the standard deviations of the distribution of pollution

    International Nuclear Information System (INIS)

    An original concept on the difference of behaviour of the high frequency (small-scale) and low frequency (large-scale) atmospheric turbulence relatively to the mean wind speed has been introduced. Through a dimensional analysis based on TAYLOR's formulation, it has been shown that the parameter of the atmospheric dispersion standard-deviations was the travel distance near the source, and the travel time far from the source. Using hypotheses on the energy spectrum in the atmosphere, a numerical application has made it possible to quantify the evolution of the horizontal standard deviation for different mean wind speeds between 0,2 and 10m/s. The areas of validity of the parameter (travel distance or travel time) are clearly shown. The first one is confined in the near field and is all the smaller if the wind speed decreases. For t > 5000s, the dependence on the wind speed of the horizontal standard-deviation expressed in function of the travel time becomes insignificant. The horizontal standard-deviation is only function of the travel time. Results are compared with experimental data obtained in the atmosphere. The similar evolution of the calculated and experimental curves confirms the validity of the hypothesis and input data in calculation. This study can be applied to radioactive effluents transport in the atmosphere

  10. Predicting leptonic CP phase by considering deviations in charged lepton and neutrino sectors

    International Nuclear Information System (INIS)

    Recently, the reactor mixing angle θ13 has been measured precisely by Daya Bay, RENO, and T2K experiments with a moderately large value. However, the standard form of neutrino mixing patterns such as bimaximal, tri-bimaximal, golden ratio of types A and B, hexagonal, etc., which are based on certain flavor symmetries, predict vanishing θ13. Using the fact that the neutrino mixing matrix can be represented as VPMNS=Ul†UνPν, where Ul and Uν result from the diagonalization of the charged lepton and neutrino mass matrices and Pν is a diagonal matrix containing Majorana phases, we explore the possibility of accounting for the large reactor mixing angle by considering deviations both in the charged lepton and neutrino sector. In the charged lepton sector we consider the deviation as an additional rotation in the (12) and (13) planes, whereas in the neutrino sector we consider deviations to various neutrino mixing patterns through (13) and (23) rotations. We find that with the inclusion of these deviations it is possible to accommodate the observed large reactor mixing angle θ13, and one can also obtain limits on the charge-conjugation parity-violating Dirac phaseδCP and Jarlskog invariant JCP for most of the cases. We then explore whether our findings can be tested in the currently running NuMI Off-axis ve Appearance experiment with three years of data taking in neutrino mode followed by three years with the anti-neutrino mode

  11. Deviating from the standard: effects on labor continuity and career patterns

    NARCIS (Netherlands)

    Roman, A.A.

    2006-01-01

    Deviating from a standard career path is increasingly becoming an option for individuals to combine paid labor with other important life domains. These career detours emerge in diverse labor forms such as part-time jobs, temporary working hour reductions, and labor force time-outs, used to alleviate

  12. Shape deviations of the contact areas of the total hip replacement

    Czech Academy of Sciences Publication Activity Database

    Fuis, Vladimír; Koukal, M.; Florian, Z.

    Berlin : Springer, 2011, s. 203-212. ISBN 978-3-642-23243-5. [International Conference Mechatronics 2011 /9./. Varšava (PL), 21.09.2011-24.09.2011] Institutional research plan: CEZ:AV0Z20760514 Keywords : hip joint endoprosthesis * shape deviations * wear Subject RIV: BO - Biophysics

  13. Analysis of contact pressure between the parts of total hip joint endoprosthesis with shape deviations

    Czech Academy of Sciences Publication Activity Database

    Fuis, Vladimír; Návrat, Tomáš; Hlavoň, Pavel; Koukal, M.; Houfek, Martin

    Vol. XXI Congress. Taipei, Taiwan : Elsevier, 2007 - (Huiskes, R.). S558-S558 ISBN 9789868299016. ISSN 0021-9290. [ISB 2007. 01.07.2007-05.07.2007, Taipei] R&D Projects: GA ČR GA101/05/0136 Institutional research plan: CEZ:AV0Z20760514 Keywords : shape deviation * FEM * hip joint endoprosthesis Subject RIV: BO - Biophysics

  14. J* INTEGRAL OF THE SPECIFIC DEVIATOR STRAIN ENERGY AND ITS APPLICATION

    Institute of Scientific and Technical Information of China (English)

    蒋玉川; 王启智

    2004-01-01

    First the deviator strain energy is introduced, then the problem of plane-crack critical growth was discussed, a path independent line integral J * was defined, furthermore its conservation was proved strictly. As application examples, Mode-I stress intensity factors of cracked beams were obtained with present approach. The results are shown to agree well with those available in the open literature.

  15. A method for searching the possible deviations from exponential decay law

    International Nuclear Information System (INIS)

    A continuous kinetic function approach is proposed for analyzing the experimental decay curves. In the case of purely exponential behaviour, the values of kinetic function are the same at different ages of the investigated radionuclide. The deviation from main decay curve could be found by comparison of experimental kinetic function values with these obtained in purely exponential case. (author). 12 refs

  16. Modular Multilevel Converter Modelling, Control and Analysis under Grid Frequency Deviations

    DEFF Research Database (Denmark)

    Sztykiel, Michal; Silva, Rodrigo Da; Teodorescu, Remus; Zeni, Lorenzo; Helle, Lars; Kjær, Philip Carne

    2012-01-01

    A tool for component sizing for MMCs has been developed and tested through simulations in PLECS. The steady-state behaviour under grid frequency deviations - interesting for offshore wind farm connections - has been analysed, providing insights in MMC characteristics and further testing the propo...

  17. Measurement of position deviation and eccentricity for μ-disc-type inductive micro-motor

    Science.gov (United States)

    Lin, Chih-Che; Tsai, Nan-Chyuan

    2015-12-01

    An innovative capacitive gap-sensing readout circuit to replace traditional gap sensor is designed to measure the motion of the levitated micro-disc embedded in an inductive micro-motor. Twelve equivalent capacitor pairs are constructed to detect the position deviation of the disc. As the position deviation of disc occurs, the capacitances of the corresponding capacitor pairs are altered. In addition, by applying the effects of inertial force and centrifugal force, an innovative non-contact measurement method to quantify the unbalance degree of the micro-disc, i.e., eccentricity, is also proposed. By commercial computer simulations and realistic experiments undertaken, the performance of the proposed capacitive gap-sensing readout circuit has been successfully verified. The mean of output voltage of gap-sensing readout circuit is about 327 mV under the position deviation of the disc being 8 μm. Moreover, the unbalance degree of the disc is approximately proportional to the square of the position deviation of the disc.

  18. What determines the informativeness of firms' explanations for deviations from the Dutch corporate governance code?

    NARCIS (Netherlands)

    Hooghiemstra, R.B.H.

    2012-01-01

    The comply-or-explain principle is a common feature of corporate governance codes. While prior studies investigated compliance with corporate governance codes as well as the effects of compliance on firm behaviour and performance, explanations for deviations from a corporate governance code remain l

  19. Iron and Cobalt Complexes of 2,6-Diacetylpyridine-bis(R-thiosemicarbazone) (R=H, phenyl) Showing Unprecedented Ligand Deviation from Planarity

    OpenAIRE

    Panja, Anangamohan; Campana, Charles; Leavitt, Christopher; van Stipdonk, Michael J.; Eichhorn, David M.

    2009-01-01

    The syntheses, characterization, and single-crystal X-ray crystal structures are reported for four complexes of iron and cobalt with the pentadentate ligands, 2,6-diacetylpyridinebis(thiosemicarbazone) (H2L1) and 2,6-diacetylpyridinebis-(phenylthiosemicarbazone) (H2L2), including a cobalt dimer displaying a deviation from planarity which is unprecedented for this class of ligands and allows the ligand to occupy five positions of a pseudo-octahedral coordination sphere. This dimer reacts with ...

  20. Approaching nanometre accuracy in measurement of the profile deviation of a large plane mirror

    International Nuclear Information System (INIS)

    The interferometric nanoprofilometer (INP), developed at the Institute of Process Measurement and Sensor Technology at the Ilmenau University of Technology, is a precision device for measuring the profile deviations of plane mirrors with a profile length of up to 250 mm at the nanometre scale. As its expanded uncertainty of U(l) = 7.8 nm at a confidence level of p = 95% (k = 2) was mainly influenced by the uncertainty of the straightness standard (3.6 nm) and the uncertainty caused by the signal and demodulation errors of the interferometer signals (1.2 nm), these two sources of uncertainty have been the subject of recent analyses and modifications. To measure the profile deviation of the standard mirror we performed a classic three-flat test using the INP. The three-flat test consists of a combination of measurements between three different test flats. The shape deviations of the three flats can then be determined by applying a least-squares solution of the resulting equation system. The results of this three-flat test showed surprisingly good consistency, enabling us to correct this systematic error in profile deviation measurements and reducing the uncertainty component of the standard mirror to 0.4 nm. Another area of research is the signal and demodulation error arising during the interpretation of the interferometer signals. In the case of the interferometric nanoprofilometer, the special challenge is that the maximum path length differences are too small during the scan of the entire profile deviation over perfectly aligned 250 mm long mirrors for proper interpolation and correction since they do not yet cover even half of an interference fringe. By applying a simple method of weighting to the interferometer data the common ellipse fitting could be performed successfully and the demodulation error was greatly reduced. The remaining uncertainty component is less than 0.5 nm. In summary we were successful in greatly reducing two major systematic errors. The

  1. Phosphorylation by CK2 and MAPK enhances calnexin association with ribosomes.

    OpenAIRE

    Chevet, E.; Wong, H N; Gerber, D.; Cochet, C; A Fazel; Cameron, P H; Gushue, J N; Thomas, D. Y.; Bergeron, J J

    1999-01-01

    Calnexin was initially identified as an endoplasmic reticulum (ER) type I integral membrane protein, phosphorylated on its cytosolic domain by ER-associated protein kinases. Although the role of the ER luminal domain of calnexin has been established as a constituent of the molecular chaperone machinery of the ER, less is known about the role of the cytosolic phosphorylation of calnexin. Analysis by two-dimensional phosphopeptide maps revealed that calnexin was in vitro phosphorylated in isola...

  2. A CK2-dependent mechanism for activation of the JAK-STAT signaling pathway

    OpenAIRE

    Zheng, Ying; Qin, Hongwei; Frank, Stuart J.; Deng, Luqin; Litchfield, David W.; Tefferi, Ayalew; Pardanani, Animesh; Lin, Fang-Tsyr; Li, Jingzhi; Sha, Bingdong; Benveniste, Etty N.

    2011-01-01

    JAK-STAT signaling is involved in the regulation of cell survival, proliferation, and differentiation. JAK tyrosine kinases can be transiently activated by cytokines or growth factors in normal cells, whereas they become constitutively activated as a result of mutations that affect their function in tumors. Specifically, the JAK2V617F mutation is present in the majority of patients with myeloproliferative disorders (MPDs) and is implicated in the pathogenesis of these diseases. In the present...

  3. Die Trinkwasser-Verhältnisse der Stadt Osnabrück : 2. Teil

    OpenAIRE

    Thörner, Wilhelm (Dr.)

    2013-01-01

    Im fünften Jahresbericht für die Jahre 1880-1882 des naturwissenschaftlichen Vereins zu Osnabrück machten wir, an der Hand einer größeren Reihe einschlägiger Untersuchungen, Mitteilungen über die Trinkwasser- Verhältnisse der Stadt Osnabrück. Diese aufklärenden Untersuchungen sind inzwischen stetig fortgesetzt worden und es haben sich, wie aus der umstehenden tabellarischen Zusammenstellung der Resultate der Analysen hervorgeht, die Trinkwasserverhältnisse unserer Stadt eher verschlechtert al...

  4. CK2-mediated stimulation of Pol I transcription by stabilization of UBF–SL1 interaction

    OpenAIRE

    Lin, Chih-Yin; Navarro, Sonia; Reddy, Sita; Comai, Lucio

    2006-01-01

    High levels of rRNA synthesis by RNA polymerase I are important for cell growth and proliferation. In vitro studies have indicated that the formation of a stable complex between the HMG box factor [Upstream binding factor (UBF)] and SL1 at the rRNA gene promoter is necessary to direct multiple rounds of Pol I transcription initiation. The recruitment of SL1 to the promoter occurs through protein interactions with UBF and is regulated by phosphorylation of UBF. Here we show that the protein ki...

  5. CRY Drives Cyclic CK2-Mediated BMAL1 Phosphorylation to Control the Mammalian Circadian Clock

    NARCIS (Netherlands)

    T. Tamaru (Teruya); M. Hattori (Mitsuru); K. Honda (Kousuke); Y. Nakahata (Yasukazu); P. Sassone-Corsi (Paolo); G.T.J. van der Horst (Gijsbertus); T. Ozawa (Takeaki); K. Takamatsu (Ken)

    2015-01-01

    textabstractIntracellular circadian clocks, composed of clock genes that act in transcription-translation feedback loops, drive global rhythmic expression of the mammalian transcriptome and allow an organism to anticipate to the momentum of the day. Using a novel clock-perturbing peptide, we establi

  6. Ck2-Dependent Phosphorylation Is Required to Maintain Pax7 Protein Levels in Proliferating Muscle Progenitors.

    Directory of Open Access Journals (Sweden)

    Natalia González

    Full Text Available Skeletal muscle regeneration and long term maintenance is directly link to the balance between self-renewal and differentiation of resident adult stem cells known as satellite cells. In turn, satellite cell fate is influenced by a functional interaction between the transcription factor Pax7 and members of the MyoD family of muscle regulatory factors. Thus, changes in the Pax7-to-MyoD protein ratio may act as a molecular rheostat fine-tuning acquisition of lineage identity while preventing precocious terminal differentiation. Pax7 is expressed in quiescent and proliferating satellite cells, while its levels decrease sharply in differentiating progenitors Pax7 is maintained in cells (reacquiring quiescence. While the mechanisms regulating Pax7 levels based on differentiation status are not well understood, we have recently described that Pax7 levels are directly regulated by the ubiquitin-ligase Nedd4, thus promoting proteasome-dependent Pax7 degradation in differentiating satellite cells. Here we show that Pax7 levels are maintained in proliferating muscle progenitors by a mechanism involving casein kinase 2-dependent Pax7 phosphorylation at S201. Point mutations preventing S201 phosphorylation or casein kinase 2 inhibition result in decreased Pax7 protein in proliferating muscle progenitors. Accordingly, this correlates directly with increased Pax7 ubiquitination. Finally, Pax7 down regulation induced by casein kinase 2 inhibition results in precocious myogenic induction, indicating early commitment to terminal differentiation. These observations highlight the critical role of post translational regulation of Pax7 as a molecular switch controlling muscle progenitor fate.

  7. Protein kinase CK2 mutants defective in substrate recognition. Purification and kinetic analysis

    DEFF Research Database (Denmark)

    Sarno, S; Vaglio, P; Meggio, F; Issinger, O G; Pinna, L A

    1996-01-01

    the recombinant beta subunit. By this latter procedure five mutated tetrameric holoenzymes were obtained as judged from their subunit composition, sedimentation coefficient on sucrose gradient ultracentrifugation, and increased activity toward a specific peptide substrate as compared with the isolated...

  8. Ck2-Dependent Phosphorylation Is Required to Maintain Pax7 Protein Levels in Proliferating Muscle Progenitors

    Science.gov (United States)

    González, Natalia; Moresco, James J.; Bustos, Francisco; Yates, John R.; Olguín, Hugo C.

    2016-01-01

    Skeletal muscle regeneration and long term maintenance is directly link to the balance between self-renewal and differentiation of resident adult stem cells known as satellite cells. In turn, satellite cell fate is influenced by a functional interaction between the transcription factor Pax7 and members of the MyoD family of muscle regulatory factors. Thus, changes in the Pax7-to-MyoD protein ratio may act as a molecular rheostat fine-tuning acquisition of lineage identity while preventing precocious terminal differentiation. Pax7 is expressed in quiescent and proliferating satellite cells, while its levels decrease sharply in differentiating progenitors Pax7 is maintained in cells (re)acquiring quiescence. While the mechanisms regulating Pax7 levels based on differentiation status are not well understood, we have recently described that Pax7 levels are directly regulated by the ubiquitin-ligase Nedd4, thus promoting proteasome-dependent Pax7 degradation in differentiating satellite cells. Here we show that Pax7 levels are maintained in proliferating muscle progenitors by a mechanism involving casein kinase 2-dependent Pax7 phosphorylation at S201. Point mutations preventing S201 phosphorylation or casein kinase 2 inhibition result in decreased Pax7 protein in proliferating muscle progenitors. Accordingly, this correlates directly with increased Pax7 ubiquitination. Finally, Pax7 down regulation induced by casein kinase 2 inhibition results in precocious myogenic induction, indicating early commitment to terminal differentiation. These observations highlight the critical role of post translational regulation of Pax7 as a molecular switch controlling muscle progenitor fate. PMID:27144531

  9. An alternative approach to the analysis of sucker-rod dynamics in vertical and deviated wells

    Energy Technology Data Exchange (ETDEWEB)

    Lollback, P.A.; Wang, G.Y.; Rahman, S.S. [The Centre for Petroleum Engineering, School of Applied Science, The University of New South Wales, Sydney (Australia)

    1997-05-01

    A set of partial differential equations which consider the combined effects of fluid column, sucker-rod string and tubing motion were developed to describe the motion of a sucker-rod pumping system. If the tubing is fixed, only the fluid column and rod motion need be considered; however, when the tubing is free to move, energy in the system is lost and, therefore, pump system efficiency declines, hence, the need to consider these effects in the design of the sucker-rod system. Using finite differences this model was used to evaluate performance of sucker-rod pumps (pumping rate as a function of number of strokes, stroke length, rod length, ratio of plunger to cylinder diameter, etc.) in both vertical and deviated wells. The results indicate that the developed model simply and accurately models the dynamic motion of the sucker-rod string. The examples presented illustrate its general applicability in both vertical and deviated wells

  10. MUSiC - A general search for deviations from Monte Carlo predictions in CMS

    Energy Technology Data Exchange (ETDEWEB)

    Biallass, Philipp A, E-mail: biallass@cern.c [Physics Institute IIIA, RWTH Aachen, Physikzentrum, 52056 Aachen (Germany)

    2009-06-01

    A model independent analysis approach in CMS is presented, systematically scanning the data for deviations from the Monte Carlo expectation. Such an analysis can contribute to the understanding of the detector and the tuning of the event generators. Furthermore, due to the minimal theoretical bias this approach is sensitive to a variety of models of new physics, including those not yet thought of. Events are classified into event classes according to their particle content (muons, electrons, photons, jets and missing transverse energy). A broad scan of various distributions is performed, identifying significant deviations from the Monte Carlo simulation. The importance of systematic uncertainties is outlined, which are taken into account rigorously within the algorithm. Possible detector effects and generator issues, as well as models involving Supersymmetry and new heavy gauge bosons are used as an input to the search algorithm.

  11. MUSIC -- An Automated Scan for Deviations between Data and Monte Carlo Simulation

    CERN Document Server

    CMS Collaboration

    We present a model independent analysis approach, systematically scanning the data for deviations from the Monte Carlo expectation. Such an analysis can contribute to the understanding of the detector and the tuning of the event generators. Due to the minimal theoretical bias this approach is sensitive to a variety of models, including those not yet thought of. Events are classified into event classes according to their particle content (muons, electrons, photons, jets and missing transverse energy). A broad scan of various distributions is performed, identifying significant deviations from the Monte Carlo simulation. We outline the importance of systematic uncertainties, which are taken into account rigorously within the algorithm. Possible detector effects and generator issues, as well as models involving supersymmetry and new heavy gauge bosons have been used as an input to the search algorithm. %Several models involving supersymmetry, new heavy gauge bosons and leptoquarks, as well as possible detector ef...

  12. A phase deviation based split-spectrum processing algorithm for ultrasonic flaw detection

    Institute of Scientific and Technical Information of China (English)

    LIU Zhenqing

    2002-01-01

    The Split Spectrum Processing (SSP) technique has proved its ability in reduction of interference noise in ultrasonic nondestructive testing for coarse grained materials. However,the results of SSP algorithms are not sufficiently stable since they are sensitive to the filter bank and filter parameters. And the mechanism of the technique to fully explore the signals is not clear. The statistical phase response characteristic of filter outputs for ultrasonic testing is discussed. Thus, a new SSP algorithm based on phase standard deviation is proposed. The performance is examined for both computer simulated and experimental data, and compared to commonly used minimum algorithm. The phase standard deviation algorithm is proved its superior effect and is less sensitive on the number of filters.

  13. Effect of Power Deviation Ratio on the Selection of Sites for a Wind Power Generation System

    Directory of Open Access Journals (Sweden)

    Kazi Khurshidi Haque Dia

    2015-02-01

    Full Text Available Wind energy is one of the most important energy among the renewable energy sources in today’s world. Realizing the importance of renewable energy, this paper focuses on selecting sites to harvest electrical power from wind energy as the demand of electricity is on increase rapidly. In this work, precisely, seven different regions of Bangladesh with high average of yearly wind speed are investigated. The results of the investigations show the relation between Unit Electricity Cost of a typical site with the power deviation ratio of generating power with respect to average load of that site. This relation helps to select a site to set up wind power generation system not only considering high average speed of wind and high average generated power as key-factors but also to consider power deviation ratio of the site in order to justify the system economically

  14. Study Of The Effect Of Nasal- Septal Deviation On The Middle Ear Pressure

    Directory of Open Access Journals (Sweden)

    Motesaddi Zarandi M

    2003-10-01

    Full Text Available Eustachian tube connects middle ear space to the nasopharyngeal space. Upper airway obstruction, with any cause, can derange Eustachian tube function. Nasal septal deviation is one of the prevalent causes of upper airway obstruction which can affects the ventilation function of Eustachian tube."nMaterials and Methods: This study was conducted on the patients who underwent septoplasty due to severe septal deviation leading to unilateral nasal obstruction in Amiraalam hospital from summer of 1378 till the spring of 1379."nResults: There was 140 patients whose data were as: female patients 34 (24.3% male patients 106 (75.7%, mean age (22.7. Median age (20 years and mode of age (18 years of age. they were from 12 to 40 years of age."nConclusion: Comparison between preoperative and postoperative middle ear pressures shows no any significant statistical difference (p=0.798.

  15. Detection of ST segment deviation episodes in ECG using KLT with an ensemble neural classifier

    International Nuclear Information System (INIS)

    In this paper, we describe a technique for automatic detection of ST segment deviations that can be used in the diagnosis of coronary heart disease (CHD) using ambulatory electrocardiogram (ECG) recordings. Preprocessing is carried out prior to the extraction of the ST segment which involves noise and artifact filtering using a digital bandpass filter, baseline removal and application of a discrete wavelet transform (DWT) based technique for detection and delineation of the QRS complex in ECG. Lead-dependent Karhunen–Loève transform (KLT) bases are used for dimensionality reduction of the ST segment data. ST deviation episodes are detected by a classifier ensemble comprising backpropagation neural networks. Results obtained through the use of our proposed method (sensitivity/positive predictive value = 90.75%/89.2%) compare well with those given in the existing research. Hence, the proposed method exhibits the potential to be adopted in the design of a practical ischemia detection system

  16. Detection of ST segment deviation episodes in ECG using KLT with an ensemble neural classifier.

    Science.gov (United States)

    Afsar, Fayyaz A; Arif, M; Yang, J

    2008-07-01

    In this paper, we describe a technique for automatic detection of ST segment deviations that can be used in the diagnosis of coronary heart disease (CHD) using ambulatory electrocardiogram (ECG) recordings. Preprocessing is carried out prior to the extraction of the ST segment which involves noise and artifact filtering using a digital bandpass filter, baseline removal and application of a discrete wavelet transform (DWT) based technique for detection and delineation of the QRS complex in ECG. Lead-dependent Karhunen-Loève transform (KLT) bases are used for dimensionality reduction of the ST segment data. ST deviation episodes are detected by a classifier ensemble comprising backpropagation neural networks. Results obtained through the use of our proposed method (sensitivity/positive predictive value = 90.75%/89.2%) compare well with those given in the existing research. Hence, the proposed method exhibits the potential to be adopted in the design of a practical ischemia detection system. PMID:18560057

  17. Analysis of laser cutting speed influence on the surface quality and shape deviation of steel parts

    Science.gov (United States)

    Kowalczyk, R.; Zebala, W.

    2014-11-01

    The results of laser cutting speed influence on the quality of machined surface, defined by the Ra roughness parameter and the shape errors, in case of machining two types of steel: i) P265GH, ii) 1.4307 are presented in the paper. Two CO2 laser cutters with maximum power of the laser beam 4000W and 3200W were used for the investigation. The characteristics of the roughness parameter Ra depending on the laser cutting speed vc are presented. The diagrams of shape deviation of the machined specimens for the greatest and lowest values of the Ra for the both laser cutters are also presented. The deviation values from the theoretical profile of the particular samples, taking into account the type of the cut-out shape profiles (circular, linear) are calculated.

  18. Hand movement deviations in a visual search task with cross modal cuing

    Directory of Open Access Journals (Sweden)

    Hürol Aslan

    2007-01-01

    Full Text Available The purpose of this study is to demonstrate the cross-modal effects of an auditory organization on a visual search task and to investigate the influence of the level of detail in instructions describing or hinting at the associations between auditory stimuli and the possible locations of a visual target. In addition to measuring the participants’ reaction times, we paid special attention to tracking the hand movements toward the target. According to the results, the auditory stimuli unassociated with the target locations slightly –but significantly- increased the deviation of the hand movement from the path leading to the target location. The increase in the deviation depended on the degree of association between auditory stimuli and target locations, albeit not on the level of detail in the instructions about the task.

  19. MUSiC - A general search for deviations from Monte Carlo predictions in CMS

    International Nuclear Information System (INIS)

    A model independent analysis approach in CMS is presented, systematically scanning the data for deviations from the Monte Carlo expectation. Such an analysis can contribute to the understanding of the detector and the tuning of the event generators. Furthermore, due to the minimal theoretical bias this approach is sensitive to a variety of models of new physics, including those not yet thought of. Events are classified into event classes according to their particle content (muons, electrons, photons, jets and missing transverse energy). A broad scan of various distributions is performed, identifying significant deviations from the Monte Carlo simulation. The importance of systematic uncertainties is outlined, which are taken into account rigorously within the algorithm. Possible detector effects and generator issues, as well as models involving Supersymmetry and new heavy gauge bosons are used as an input to the search algorithm.

  20. A contribution to large deviations for heavy-tailed random sums

    Institute of Scientific and Technical Information of China (English)

    2001-01-01

    In this paper we consider the large deviations for random sums S(t)=∑N(t)i=1Xi, t≥0, where {Xn, n≥1} are independent, identically distributed and non-negative random variables with a common heavy-tailed distribution function F, and {N(t), t≥0} is a process of non-negative integer-valued random variables, independent of {Xn, n≥1}. Under the assumption that the tail of F is of Pareto's type (regularly or extended regularly varying), we investigate what reasonable condition can be given on {N(t), t≥0} under which precise large deviation for S(t) holds. In particular, the condition we obtain is satisfied for renewal counting processes.