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Sample records for cis-antisense gene pairs

  1. NCYM, a Cis-antisense gene of MYCN, encodes a de novo evolved protein that inhibits GSK3β resulting in the stabilization of MYCN in human neuroblastomas.

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    Yusuke Suenaga

    2014-01-01

    Full Text Available The rearrangement of pre-existing genes has long been thought of as the major mode of new gene generation. Recently, de novo gene birth from non-genic DNA was found to be an alternative mechanism to generate novel protein-coding genes. However, its functional role in human disease remains largely unknown. Here we show that NCYM, a cis-antisense gene of the MYCN oncogene, initially thought to be a large non-coding RNA, encodes a de novo evolved protein regulating the pathogenesis of human cancers, particularly neuroblastoma. The NCYM gene is evolutionally conserved only in the taxonomic group containing humans and chimpanzees. In primary human neuroblastomas, NCYM is 100% co-amplified and co-expressed with MYCN, and NCYM mRNA expression is associated with poor clinical outcome. MYCN directly transactivates both NCYM and MYCN mRNA, whereas NCYM stabilizes MYCN protein by inhibiting the activity of GSK3β, a kinase that promotes MYCN degradation. In contrast to MYCN transgenic mice, neuroblastomas in MYCN/NCYM double transgenic mice were frequently accompanied by distant metastases, behavior reminiscent of human neuroblastomas with MYCN amplification. The NCYM protein also interacts with GSK3β, thereby stabilizing the MYCN protein in the tumors of the MYCN/NCYM double transgenic mice. Thus, these results suggest that GSK3β inhibition by NCYM stabilizes the MYCN protein both in vitro and in vivo. Furthermore, the survival of MYCN transgenic mice bearing neuroblastoma was improved by treatment with NVP-BEZ235, a dual PI3K/mTOR inhibitor shown to destabilize MYCN via GSK3β activation. In contrast, tumors caused in MYCN/NCYM double transgenic mice showed chemo-resistance to the drug. Collectively, our results show that NCYM is the first de novo evolved protein known to act as an oncopromoting factor in human cancer, and suggest that de novo evolved proteins may functionally characterize human disease.

  2. An ensemble of SVM classifiers based on gene pairs.

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    Tong, Muchenxuan; Liu, Kun-Hong; Xu, Chungui; Ju, Wenbin

    2013-07-01

    In this paper, a genetic algorithm (GA) based ensemble support vector machine (SVM) classifier built on gene pairs (GA-ESP) is proposed. The SVMs (base classifiers of the ensemble system) are trained on different informative gene pairs. These gene pairs are selected by the top scoring pair (TSP) criterion. Each of these pairs projects the original microarray expression onto a 2-D space. Extensive permutation of gene pairs may reveal more useful information and potentially lead to an ensemble classifier with satisfactory accuracy and interpretability. GA is further applied to select an optimized combination of base classifiers. The effectiveness of the GA-ESP classifier is evaluated on both binary-class and multi-class datasets. PMID:23668348

  3. The adjacent positioning of co-regulated gene pairs is widely conserved across eukaryotes

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    Arnone James T

    2012-10-01

    Full Text Available Abstract Background Coordinated cell growth and development requires that cells regulate the expression of large sets of genes in an appropriate manner, and one of the most complex and metabolically demanding pathways that cells must manage is that of ribosome biogenesis. Ribosome biosynthesis depends upon the activity of hundreds of gene products, and it is subject to extensive regulation in response to changing cellular conditions. We previously described an unusual property of the genes that are involved in ribosome biogenesis in yeast; a significant fraction of the genes exist on the chromosomes as immediately adjacent gene pairs. The incidence of gene pairing can be as high as 24% in some species, and the gene pairs are found in all of the possible tandem, divergent, and convergent orientations. Results We investigated co-regulated gene sets in S. cerevisiae beyond those related to ribosome biogenesis, and found that a number of these regulons, including those involved in DNA metabolism, heat shock, and the response to cellular stressors were also significantly enriched for adjacent gene pairs. We found that as a whole, adjacent gene pairs were more tightly co-regulated than unpaired genes, and that the specific gene pairing relationships that were most widely conserved across divergent fungal lineages were correlated with those genes that exhibited the highest levels of transcription. Finally, we investigated the gene positions of ribosome related genes across a widely divergent set of eukaryotes, and found a significant level of adjacent gene pairing well beyond yeast species. Conclusion While it has long been understood that there are connections between genomic organization and transcriptional regulation, this study reveals that the strategy of organizing genes from related, co-regulated pathways into pairs of immediately adjacent genes is widespread, evolutionarily conserved, and functionally significant.

  4. Aldehyde Dehydrogenase Gene Superfamily in Populus: Organization and Expression Divergence between Paralogous Gene Pairs.

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    Feng-Xia Tian

    Full Text Available Aldehyde dehydrogenases (ALDHs constitute a superfamily of NAD(P+-dependent enzymes that catalyze the irreversible oxidation of a wide range of reactive aldehydes to their corresponding nontoxic carboxylic acids. ALDHs have been studied in many organisms from bacteria to mammals; however, no systematic analyses incorporating genome organization, gene structure, expression profiles, and cis-acting elements have been conducted in the model tree species Populus trichocarpa thus far. In this study, a comprehensive analysis of the Populus ALDH gene superfamily was performed. A total of 26 Populus ALDH genes were found to be distributed across 12 chromosomes. Genomic organization analysis indicated that purifying selection may have played a pivotal role in the retention and maintenance of PtALDH gene families. The exon-intron organizations of PtALDHs were highly conserved within the same family, suggesting that the members of the same family also may have conserved functionalities. Microarray data and qRT-PCR analysis indicated that most PtALDHs had distinct tissue-specific expression patterns. The specificity of cis-acting elements in the promoter regions of the PtALDHs and the divergence of expression patterns between nine paralogous PtALDH gene pairs suggested that gene duplications may have freed the duplicate genes from the functional constraints. The expression levels of some ALDHs were up- or down-regulated by various abiotic stresses, implying that the products of these genes may be involved in the adaptation of Populus to abiotic stresses. Overall, the data obtained from our investigation contribute to a better understanding of the complexity of the Populus ALDH gene superfamily and provide insights into the function and evolution of ALDH gene families in vascular plants.

  5. Conservation of the paired domain in metazoans and its structure in three isolated human genes.

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    Burri, M; Tromvoukis, Y; Bopp, D; Frigerio, G; M. Noll

    1989-01-01

    Sequences homologous to the paired domain of Drosophila melanogaster have been conserved in species as distantly related as nematodes, sea urchins, or man. In particular, paired domains of three human genes, HuP1, HuP2 and HuP48, have been isolated and sequenced. Together with four Drosophila paired domains, they fall into two separate paired domain classes named according to their Drosophila members, paired--gooseberry and P29 class. The P29 class includes the mouse Pax 1 and the human HuP48...

  6. Characterization of a cryptic gene pair from Neisseria gonorrhoeae that is common to pathogenic Neisseria species.

    OpenAIRE

    Seifert, H S; Wilson, D

    1992-01-01

    A pair of genes, each of which produces in Escherichia coli a 20-kDa, periplasmically localized protein that cross-reacts with anti-rpoN monoclonal antibody, was isolated from Neisseria gonorrhoeae. Homologs of the two genes were detected in pathogenic Neisseria species but not in commensal species. These genes are designated cnp1 and cnp2 (cryptic neisserial protein).

  7. Homologue Pairing in Flies and Mammals: Gene Regulation When Two Are Involved

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    Manasi S. Apte

    2012-01-01

    Full Text Available Chromosome pairing is usually discussed in the context of meiosis. Association of homologues in germ cells enables chromosome segregation and is necessary for fertility. A few organisms, such as flies, also pair their entire genomes in somatic cells. Most others, including mammals, display little homologue pairing outside of the germline. Experimental evidence from both flies and mammals suggests that communication between homologues contributes to normal genome regulation. This paper will contrast the role of pairing in transmitting information between homologues in flies and mammals. In mammals, somatic homologue pairing is tightly regulated, occurring at specific loci and in a developmentally regulated fashion. Inappropriate pairing, or loss of normal pairing, is associated with gene misregulation in some disease states. While homologue pairing in flies is capable of influencing gene expression, the significance of this for normal expression remains unknown. The sex chromosomes pose a particularly interesting situation, as females are able to pair X chromosomes, but males cannot. The contribution of homologue pairing to the biology of the X chromosome will also be discussed.

  8. Tbx4/5 gene duplication and the origin of vertebrate paired appendages

    OpenAIRE

    Minguillon, Carolina; Gibson-Brown, Jeremy J.; Logan, Malcolm P.

    2009-01-01

    Paired fins/limbs are one of the most successful vertebrate innovations, since they are used for numerous fundamental activities, including locomotion, feeding, and breeding. Gene duplication events generate new genes with the potential to acquire novel functions, and two rounds of genome duplication took place during vertebrate evolution. The cephalochordate amphioxus diverged from other chordates before these events and is widely used to deduce the functions of ancestral genes, present in s...

  9. Characterization of a cryptic gene pair from Neisseria gonorrhoeae that is common to pathogenic Neisseria species.

    Science.gov (United States)

    Seifert, H S; Wilson, D

    1992-03-01

    A pair of genes, each of which produces in Escherichia coli a 20-kDa, periplasmically localized protein that cross-reacts with anti-rpoN monoclonal antibody, was isolated from Neisseria gonorrhoeae. Homologs of the two genes were detected in pathogenic Neisseria species but not in commensal species. These genes are designated cnp1 and cnp2 (cryptic neisserial protein). PMID:1541538

  10. Classification between normal and tumor tissues based on the pair-wise gene expression ratio

    International Nuclear Information System (INIS)

    Precise classification of cancer types is critically important for early cancer diagnosis and treatment. Numerous efforts have been made to use gene expression profiles to improve precision of tumor classification. However, reliable cancer-related signals are generally lacking. Using recent datasets on colon and prostate cancer, a data transformation procedure from single gene expression to pair-wise gene expression ratio is proposed. Making use of the internal consistency of each expression profiling dataset this transformation improves the signal to noise ratio of the dataset and uncovers new relevant cancer-related signals (features). The efficiency in using the transformed dataset to perform normal/tumor classification was investigated using feature partitioning with informative features (gene annotation) as discriminating axes (single gene expression or pair-wise gene expression ratio). Classification results were compared to the original datasets for up to 10-feature model classifiers. 82 and 262 genes that have high correlation to tissue phenotype were selected from the colon and prostate datasets respectively. Remarkably, data transformation of the highly noisy expression data successfully led to lower the coefficient of variation (CV) for the within-class samples as well as improved the correlation with tissue phenotypes. The transformed dataset exhibited lower CV when compared to that of single gene expression. In the colon cancer set, the minimum CV decreased from 45.3% to 16.5%. In prostate cancer, comparable CV was achieved with and without transformation. This improvement in CV, coupled with the improved correlation between the pair-wise gene expression ratio and tissue phenotypes, yielded higher classification efficiency, especially with the colon dataset – from 87.1% to 93.5%. Over 90% of the top ten discriminating axes in both datasets showed significant improvement after data transformation. The high classification efficiency achieved suggested

  11. DLGP: A database for lineage-conserved and lineage-specific gene pairs in animal and plant genomes.

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    Wang, Dapeng

    2016-01-15

    The conservation of gene organization in the genome with lineage-specificity is an invaluable resource to decipher their potential functionality with diverse selective constraints, especially in higher animals and plants. Gene pairs appear to be the minimal structure for such kind of gene clusters that tend to reside in their preferred locations, representing the distinctive genomic characteristics in single species or a given lineage. Despite gene families having been investigated in a widespread manner, the definition of gene pair families in various taxa still lacks adequate attention. To address this issue, we report DLGP (http://lcgbase.big.ac.cn/DLGP/) that stores the pre-calculated lineage-based gene pairs in currently available 134 animal and plant genomes and inspect them under the same analytical framework, bringing out a set of innovational features. First, the taxonomy or lineage has been classified into four levels such as Kingdom, Phylum, Class and Order. It adopts all-to-all comparison strategy to identify the possible conserved gene pairs in all species for each gene pair in certain species and reckon those that are conserved in over a significant proportion of species in a given lineage (e.g. Primates, Diptera or Poales) as the lineage-conserved gene pairs. Furthermore, it predicts the lineage-specific gene pairs by retaining the above-mentioned lineage-conserved gene pairs that are not conserved in any other lineages. Second, it carries out pairwise comparison for the gene pairs between two compared species and creates the table including all the conserved gene pairs and the image elucidating the conservation degree of gene pairs in chromosomal level. Third, it supplies gene order browser to extend gene pairs to gene clusters, allowing users to view the evolution dynamics in the gene context in an intuitive manner. This database will be able to facilitate the particular comparison between animals and plants, between vertebrates and arthropods, and

  12. Comprehensive profiling of EBV gene expression in nasopharyngeal carcinoma through paired-end transcriptome sequencing.

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    Hu, Lijuan; Lin, Zhirui; Wu, Yanheng; Dong, Juqin; Zhao, Bo; Cheng, Yanbing; Huang, Peiyu; Xu, Lihua; Xia, Tianliang; Xiong, Dan; Wang, Hongbo; Li, Manzhi; Guo, Ling; Kieff, Elliott; Zeng, Yixin; Zhong, Qian; Zeng, Musheng

    2016-03-01

    The latent expression pattern of Epstein-Barr Virus (EBV) genes in nasopharyngeal carcinoma (NPC) has been extensively investigated, and the expression of several lytic genes in NPC has been reported. However, comprehensive information through EBV transcriptome analysis in NPC is limited. We performed paired-end RNA-seq to systematically and comprehensively characterize the expression of EBV genes in NPC tissue and C666-1 NPC cell line, which consistently carries EBV. In addition to the transcripts restricted to type II latency infection, the type III latency EBNA3s genes and a substantial number of lytic genes, such as BZLF1, BRLF1, and BMRF1, were detected through RNA-seq and were further verified in C666-1 cells and NPC tissue through realtime PCR.We also performed clustering analysis to classify NPC patient groups in terms of EBV gene expression, which presented two subtypes of NPC samples. Results revealed interesting patterns of EBV gene expression in NPC patients. This clustering was correlated with many signaling pathways, such as those related to heterotrimeric G-protein signaling, inflammation mediated by chemokine and cytokine signaling, ribosomes, protein metabolism, influenza infection, and ECM-receptor interaction. Our combined findings suggested that the expression of EBV genes in NPC is restricted not only to type II latency genes but also to type III latency and lytic genes. This study provided further insights into the potential role of EBV in the development of NPC. PMID:26969667

  13. The association between paired basic amino acid cleaving enzyme 4 gene haplotype and diastolic blood pressure

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    李建平; 王晓滨; 陈常忠; 徐新; 洪雪梅; 徐希平; 高炜; 霍勇

    2004-01-01

    Background In a previously identified locus linked to hypertension on chromosome 15q, we identified three blood pressure candidate genes: insulin-like growth factor 1 receptor gene (IGF1R), myocyte specific enhancer factor 2A gene (MEF2A), and paired basic amino acid cleaving enzyme 4 gene (PACE4). In this study, we tested their associations with hypertension using haplotype analysis.Methods A total of 288 unrelated individuals, including 163 high diastolic blood pressure (DBP) subjects and 125 normal DBP subjects were enrolled in this case-control study. Twenty single nucleotide polymorphisms (SNPs) in the three genes were genotyped using polymerase chain reaction followed by restriction enzyme digestion. Haplotype analysis was accomplished in the following stages: (1) pair-wise linkage disequilibrium test among SNPs on the same gene was performed to explore blocks in which recombination is very unlikely to happen; (2) Estimation-Maximization algorithm was applied to estimate haplotype frequencies in each block; (3) the chi-square test was used to examine the specific haplotype difference, and a permutation test was used to examine the overall haplotype profile difference between cases and controls in each block.Results An estimated haplotype "CCCCG" frequency in the haplotype block on the PACE4 gene was significantly higher in high DBP cases than in controls (P<0.01). The overall estimated haplotype profile in this block was also significantly different between the cases and the controls (P<0.001). This association indicates. Conclusions This study for the first time demonstrated that PACE4 gene may play an important role in the regulation of DBP. This association indicates that variations influencing DBP resides in or near this genomic region.

  14. Sense-antisense gene-pairs in breast cancer and associated pathological pathways

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    Grinchuk, Oleg V.; Motakis, Efthymios; Yenamandra, Surya Pavan; Ow, Ghim Siong; Jenjaroenpun, Piroon; Tang, Zhiqun; Yarmishyn, Aliaksandr A.; Ivshina, Anna V.; Kuznetsov, Vladimir A.

    2015-01-01

    More than 30% of human protein-coding genes form hereditary complex genome architectures composed of sense-antisense (SA) gene pairs (SAGPs) transcribing their RNAs from both strands of a given locus. Such architectures represent important novel components of genome complexity contributing to gene expression deregulation in cancer cells. Therefore, the architectures might be involved in cancer pathways and, in turn, be used for novel drug targets discovery. However, the global roles of SAGPs in cancer pathways has not been studied. Here we investigated SAGPs associated with breast cancer (BC)-related pathways using systems biology, prognostic survival and experimental methods. Gene expression analysis identified 73 BC-relevant SAGPs that are highly correlated in BC. Survival modelling and metadata analysis of the 1161 BC patients allowed us to develop a novel patient prognostic grouping method selecting the 12 survival-significant SAGPs. The qRT-PCR-validated 12-SAGP prognostic signature reproducibly stratified BC patients into low- and high-risk prognostic subgroups. The 1381 SAGP-defined differentially expressed genes common across three studied cohorts were identified. The functional enrichment analysis of these genes revealed the GABPA gene network, including BC-relevant SAGPs, specific gene sets involved in cell cycle, spliceosomal and proteasomal pathways. The co-regulatory function of GABPA in BC cells was supported using siRNA knockdown studies. Thus, we demonstrated SAGPs as the synergistically functional genome architectures interconnected with cancer-related pathways and associated with BC patient clinical outcomes. Taken together, SAGPs represent an important component of genome complexity which can be used to identify novel aspects of coordinated pathological gene networks in cancers. PMID:26517092

  15. Linkage of the VNTR/insulin-gene and type I diabetes mellitus: Increased gene sharing in affected sibling pairs

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    Owerbach, D.; Gabbay, K.H. (Baylor College of Medicine, Houston, TX (United States))

    1994-05-01

    Ninety-six multiplex type I diabetic families were typed at the 5' flanking region of the insulin gene by using a PCR assay that better resolves the VNTR into multiple alleles. Affected sibling pairs shared 2, 1, and 0 VNTR alleles - identical by descent - at a frequency of .47, .45, and .08, respectively, a ratio that deviated from the expected 1:2:1 ratio (P<.001). These results confirm linkage of the chromosome 11p15.5 region with type I diabetes mellitus susceptibility. 20 refs., 2 tabs.

  16. FusionQ: a novel approach for gene fusion detection and quantification from paired-end RNA-Seq

    OpenAIRE

    Liu, Chenglin; Ma, Jinwen; Chang, ChungChe (Jeff); Zhou, Xiaobo

    2013-01-01

    Background Gene fusions, which result from abnormal chromosome rearrangements, are a pathogenic factor in cancer development. The emerging RNA-Seq technology enables us to detect gene fusions and profile their features. Results In this paper, we proposed a novel fusion detection tool, FusionQ, based on paired-end RNA-Seq data. This tool can detect gene fusions, construct the structures of chimerical transcripts, and estimate their abundances. To confirm the read alignment on both sides of a f...

  17. A semi-supervised approach to extract pharmacogenomics-specific drug-gene pairs from biomedical literature for personalized medicine.

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    Xu, Rong; Wang, Quanqiu

    2013-08-01

    Personalized medicine is to deliver the right drug to the right patient in the right dose. Pharmacogenomics (PGx) is to identify genetic variants that may affect drug efficacy and toxicity. The availability of a comprehensive and accurate PGx-specific drug-gene relationship knowledge base is important for personalized medicine. However, building a large-scale PGx-specific drug-gene knowledge base is a difficult task. In this study, we developed a bootstrapping, semi-supervised learning approach to iteratively extract and rank drug-gene pairs according to their relevance to drug pharmacogenomics. Starting with a single PGx-specific seed pair and 20 million MEDLINE abstracts, the extraction algorithm achieved a precision of 0.219, recall of 0.368 and F1 of 0.274 after two iterations, a significant improvement over the results of using non-PGx-specific seeds (precision: 0.011, recall: 0.018, and F1: 0.014) or co-occurrence (precision: 0.015, recall: 1.000, and F1: 0.030). After the extraction step, the ranking algorithm further improved the precision from 0.219 to 0.561 for top ranked pairs. By comparing to a dictionary-based approach with PGx-specific gene lexicon as input, we showed that the bootstrapping approach has better performance in terms of both precision and F1 (precision: 0.251 vs. 0.152, recall: 0.396 vs. 0.856 and F1: 0.292 vs. 0.254). By integrative analysis using a large drug adverse event database, we have shown that the extracted drug-gene pairs strongly correlate with drug adverse events. In conclusion, we developed a novel semi-supervised bootstrapping approach for effective PGx-specific drug-gene pair extraction from large number of MEDLINE articles with minimal human input. PMID:23570835

  18. Systems biology-guided identification of synthetic lethal gene pairs and its potential use to discover antibiotic combinations

    DEFF Research Database (Denmark)

    Aziz, Ramy K.; Monk, Jonathan M.; Lewis, R. M.;

    2015-01-01

    % and 43%. The most common failure modes were incorrect computation of single gene essentiality and biological information that was missing from the model. Moreover, we performed virtual and biological screening against several synthetic lethal pairs to explore whether two-compound formulations could be...

  19. Gene expression profiling of lymphoblasts from autistic and nonaffected sib pairs: altered pathways in neuronal development and steroid biosynthesis.

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    Valerie W Hu

    Full Text Available Despite the identification of numerous autism susceptibility genes, the pathobiology of autism remains unknown. The present "case-control" study takes a global approach to understanding the molecular basis of autism spectrum disorders based upon large-scale gene expression profiling. DNA microarray analyses were conducted on lymphoblastoid cell lines from over 20 sib pairs in which one sibling had a diagnosis of autism and the other was not affected in order to identify biochemical and signaling pathways which are differentially regulated in cells from autistic and nonautistic siblings. Bioinformatics and gene ontological analyses of the data implicate genes which are involved in nervous system development, inflammation, and cytoskeletal organization, in addition to genes which may be relevant to gastrointestinal or other physiological symptoms often associated with autism. Moreover, the data further suggests that these processes may be modulated by cholesterol/steroid metabolism, especially at the level of androgenic hormones. Elevation of male hormones, in turn, has been suggested as a possible factor influencing susceptibility to autism, which affects approximately 4 times as many males as females. Preliminary metabolic profiling of steroid hormones in lymphoblastoid cell lines from several pairs of siblings reveals higher levels of testosterone in the autistic sibling, which is consistent with the increased expression of two genes involved in the steroidogenesis pathway. Global gene expression profiling of cultured cells from ASD probands thus serves as a window to underlying metabolic and signaling deficits that may be relevant to the pathobiology of autism.

  20. A novel missense mutation of the paired box 3 gene in a Turkish family with Waardenburg syndrome type 1

    OpenAIRE

    Hazan, Filiz; Ozturk, A. Taylan; Adibelli, Hamit; Unal, Nurettin; Tukun, Ajlan

    2013-01-01

    Purpose Screening of mutations in the paired box 3 (PAX3) gene in three generations of a Turkish family with Waardenburg syndrome type 1 (WS1). Methods WS1 was diagnosed in a 13-month-old girl according to the WS Consortium criteria. Detailed family history of the proband revealed eight affected members in three generations. Routine clinical and audiological examination and ophthalmologic evaluation were performed on eight affected and five healthy members of the study family. Dystopia cantho...

  1. ProtocadherinX/Y, a Candidate Gene-Pair for Schizophrenia and Schizoaffective Disorder: A DHPLC Investigation of Gonomic Sequence

    OpenAIRE

    Giouzeli, Ms M; Williams, Dr NA; Lonie, Dr LJ; DeLisi, Prof LE; Crow, Prof TJ

    2004-01-01

    Protocadherin X and Protocadherin Y (PCDHX and PCDHY) are cell-surface adhesion molecules expressed predominantly in the brain. The PCDHX/Y gene-pair was generated by an X-Y translocation approximately 3 million years ago (MYA) that gave rise to the Homo sapiens-specific region of Xq21.3 and Yp11.2 homology. Genes within this region are expected to code for sexually dimorphic human characteristics, including, for example, cerebral asymmetry a dimension of variation that has been suggested is ...

  2. The hydrocephalus inducing gene product, Hydin, positions axonemal central pair microtubules

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    Farr Helen

    2007-08-01

    Full Text Available Abstract Background Impairment of cilia and flagella function underlies a growing number of human genetic diseases. Mutations in hydin in hy3 mice cause lethal communicating hydrocephalus with early onset. Hydin was recently identified as an axonemal protein; however, its function is as yet unknown. Results Here we use RNAi in Trypanosoma brucei to address this issue and demonstrate that loss of Hydin causes slow growth and a loss of cell motility. We show that two separate defects in newly-formed flagellar central pair microtubules underlie the loss of cell motility. At early time-points after RNAi induction, the central pair becomes mispositioned, while at later time points the central pair is lost. While the basal body is unaffected, both defects originate at the basal plate, reflecting a role for TbHydin throughout the length of the central pair. Conclusion Our data provide the first evidence of Hydin's role within the trypanosome axoneme, and reveal central pair anomalies and thus impairment of ependymal ciliary motility as the likely cause of the hydrocephalus observed in the hy3 mouse.

  3. A Pair of Novel Primers for Universal Detection of the NS1 Gene from Various Bluetongue Virus Serotypes

    Institute of Scientific and Technical Information of China (English)

    Hui-qiong YIN; Gai-ping ZHANG; Hong ZHANG; Jin-gang ZHANG

    2008-01-01

    Twenty five serotypes of Bluetongue virus (BTV) have been identified worldwide. Rapid and reliable methods of virus universal detection are essential for fighting against bluetongue (BT). We have therefore developed and evaluated a pair of primers which can detect various serotypes of BTV by RT-PCR. Analysis of the viral protein 7 (VP7) and the non-structural protein (NS1) gene from different serotypes of BTV by DNAstar showed that the 5' end of the NS1 gene is the most conserved region. The primer pairs (P1 and P2) were designed based on the highly conserved region of NS1. The novel primers were evaluated by detecting BTV serotypes 1, 3, 5, 8, 10, 11, 21 and 22. The specificity of the primers was estimated by comparing to gene sequences of viruses published in GenBank, and further assessed by detecting BTV serotype 1-12 and Epizootic hemorrhagic disease virus (EHDV) serotype 1-4. The sensitivity and repeatability of PCR with the novel primers were evaluated by successfully detecting the recombinant plasmid pGEM-T121 containing the diagnosed nucleotide sequence. Our results suggest that these unique primers can be used in high throughout and universal detection of the NS1 gene from various BTV serotypes.

  4. Sense-antisense gene pairs: sequence, transcription, and structure are not conserved between human and mouse

    OpenAIRE

    Wood, Emily J.; Chin-Inmanu, Kwanrutai; Jia, Hui; Lipovich, Leonard

    2013-01-01

    Previous efforts to characterize conservation between the human and mouse genomes focused largely on sequence comparisons. These studies are inherently limited because they don't account for gene structure differences, which may exist despite genomic sequence conservation. Recent high-throughput transcriptome studies have revealed widespread and extensive overlaps between genes, and transcripts, encoded on both strands of the genomic sequence. This overlapping gene organization, which produce...

  5. Targeted Myostatin Gene Editing in Multiple Mammalian Species Directed by a Single Pair of TALE Nucleases

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    Li XU; Zhao, Piming; Mariano, Andrew; Han, Renzhi

    2013-01-01

    Myostatin (MSTN) is a negative regulator of skeletal muscle mass. Strategies to block myostatin signaling pathway have been extensively pursued to increase muscle mass in various disease settings including muscular dystrophy. Here, we report a new class of reagents based on transcription activator-like effector nucleases (TALENs) to disrupt myostatin expression at the genome level. We designed a pair of MSTN TALENs to target a highly conserved sequence in the coding region of the myostatin ge...

  6. LDGIdb: a database of gene interactions inferred from long-range strong linkage disequilibrium between pairs of SNPs

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    Wang Ming-Chih

    2012-05-01

    Full Text Available Abstract Background Complex human diseases may be associated with many gene interactions. Gene interactions take several different forms and it is difficult to identify all of the interactions that are potentially associated with human diseases. One approach that may fill this knowledge gap is to infer previously unknown gene interactions via identification of non-physical linkages between different mutations (or single nucleotide polymorphisms, SNPs to avoid hitchhiking effect or lack of recombination. Strong non-physical SNP linkages are considered to be an indication of biological (gene interactions. These interactions can be physical protein interactions, regulatory interactions, functional compensation/antagonization or many other forms of interactions. Previous studies have shown that mutations in different genes can be linked to the same disorders. Therefore, non-physical SNP linkages, coupled with knowledge of SNP-disease associations may shed more light on the role of gene interactions in human disorders. A user-friendly web resource that integrates information about non-physical SNP linkages, gene annotations, SNP information, and SNP-disease associations may thus be a good reference for biomedical research. Findings Here we extracted the SNPs located within the promoter or exonic regions of protein-coding genes from the HapMap database to construct a database named the Linkage-Disequilibrium-based Gene Interaction database (LDGIdb. The database stores 646,203 potential human gene interactions, which are potential interactions inferred from SNP pairs that are subject to long-range strong linkage disequilibrium (LD, or non-physical linkages. To minimize the possibility of hitchhiking, SNP pairs inferred to be non-physically linked were required to be located in different chromosomes or in different LD blocks of the same chromosomes. According to the genomic locations of the involved SNPs (i.e., promoter, untranslated region (UTR and

  7. De novo assembly, gene annotation and marker development using Illumina paired-end transcriptome sequences in celery (Apium graveolens L..

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    Nan Fu

    Full Text Available BACKGROUND: Celery is an increasing popular vegetable species, but limited transcriptome and genomic data hinder the research to it. In addition, a lack of celery molecular markers limits the process of molecular genetic breeding. High-throughput transcriptome sequencing is an efficient method to generate a large transcriptome sequence dataset for gene discovery, molecular marker development and marker-assisted selection breeding. PRINCIPAL FINDINGS: Celery transcriptomes from four tissues were sequenced using Illumina paired-end sequencing technology. De novo assembling was performed to generate a collection of 42,280 unigenes (average length of 502.6 bp that represent the first transcriptome of the species. 78.43% and 48.93% of the unigenes had significant similarity with proteins in the National Center for Biotechnology Information (NCBI non-redundant protein database (Nr and Swiss-Prot database respectively, and 10,473 (24.77% unigenes were assigned to Clusters of Orthologous Groups (COG. 21,126 (49.97% unigenes harboring Interpro domains were annotated, in which 15,409 (36.45% were assigned to Gene Ontology(GO categories. Additionally, 7,478 unigenes were mapped onto 228 pathways using the Kyoto Encyclopedia of Genes and Genomes Pathway database (KEGG. Large numbers of simple sequence repeats (SSRs were indentified, and then the rate of successful amplication and polymorphism were investigated among 31 celery accessions. CONCLUSIONS: This study demonstrates the feasibility of generating a large scale of sequence information by Illumina paired-end sequencing and efficient assembling. Our results provide a valuable resource for celery research. The developed molecular markers are the foundation of further genetic linkage analysis and gene localization, and they will be essential to accelerate the process of breeding.

  8. Over half of breakpoints in gene pairs involved in cancer-specific recurrent translocations are mapped to human chromosomal fragile sites

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    Pierce Levi CT

    2009-01-01

    Full Text Available Abstract Background Gene rearrangements such as chromosomal translocations have been shown to contribute to cancer development. Human chromosomal fragile sites are regions of the genome especially prone to breakage, and have been implicated in various chromosome abnormalities found in cancer. However, there has been no comprehensive and quantitative examination of the location of fragile sites in relation to all chromosomal aberrations. Results Using up-to-date databases containing all cancer-specific recurrent translocations, we have examined 444 unique pairs of genes involved in these translocations to determine the correlation of translocation breakpoints and fragile sites in the gene pairs. We found that over half (52% of translocation breakpoints in at least one gene of these gene pairs are mapped to fragile sites. Among these, we examined the DNA sequences within and flanking three randomly selected pairs of translocation-prone genes, and found that they exhibit characteristic features of fragile DNA, with frequent AT-rich flexibility islands and the potential of forming highly stable secondary structures. Conclusion Our study is the first to examine gene pairs involved in all recurrent chromosomal translocations observed in tumor cells, and to correlate the location of more than half of breakpoints to positions of known fragile sites. These results provide strong evidence to support a causative role for fragile sites in the generation of cancer-specific chromosomal rearrangements.

  9. Bidirectional expression of long ncRNA/protein-coding gene pairs in cancer.

    Science.gov (United States)

    Albrecht, Anne-Susann; Ørom, Ulf Andersson

    2016-05-01

    Bidirectional initiation of transcription by RNA polymerase II occurs prevalently at active promoters during protein-coding gene (PCG) expression. Upstream, antisense noncoding RNAs (ncRNAs) of differing lengths, stabilities and processings are being expressed from these promoters in concert with downstream, processive messenger RNA transcription. Although abundantly detected, the functional role and regulatory capacity of such transcripts have only been determined for individual cases. Long ncRNAs in general are reportedly able to regulate all steps of the gene expression process. Therefore, to get insight into the functionality of long ncRNAs transcribed bidirectionally from cancer-associated PCGs is of interest, as expression changes of tumor suppressor genes and oncogenes are prevalent in cancer.Here, we review the sources and characteristics of antisense transcription occurring at PCG loci in the human genome, and focus on the functional impact of bidirectional long ncRNA expression at cancer-associated PCGs. PMID:26578749

  10. Cognitive Functioning in Affected Sibling Pairs with ADHD: Familial Clustering and Dopamine Genes

    Science.gov (United States)

    Loo, Sandra K.; Rich, Erika Carpenter; Ishii, Janeen; McGough, James; McCracken, James; Nelson, Stanley; Smalley, Susan L.

    2008-01-01

    Background: This paper examines familiality and candidate gene associations of cognitive measures as potential endophenotypes in attention-deficit/hyperactivity disorder (ADHD). Methods: The sample consists of 540 participants, aged 6 to 18, who were diagnosed with ADHD from 251 families recruited for a larger genetic study of ADHD. All members of…

  11. A pair of transposons coordinately suppresses gene expression, independent of pathways mediated by siRNA in Antirrhinum.

    Science.gov (United States)

    Uchiyama, Takako; Hiura, Satoshi; Ebinuma, Izuru; Senda, Mineo; Mikami, Tetsuo; Martin, Cathie; Kishima, Yuji

    2013-01-01

    Our knowledge is limited regarding mechanisms by which transposable elements control host gene expression. Two Antirrhinum lines, HAM2 and HAM5, show different petal colors, pale-red and white, respectively, although these lines contain the same insertion of transposon Tam3 in the promoter region of the nivea (niv) locus encoding chalcone synthase. Among 1000 progeny from HAM5 grown under the preferred conditions for the Tam3 transposition, a few showed an intermediate petal color between HAM2 and HAM5. Transposon tagging using these progeny identified a causative insertion of Tam3 for the HAM5 type (white) petal color, which was found 1.6 kb downstream of the niv gene. Insertion of Tam3 at the position 1.6 kb downstream of niv alone showed nearly wildtype petal pigmentation, and the niv expression reduced by only 50%. Severe suppression of niv observed in HAM5 required interaction of two Tam3 copies on either side of the niv coding sequence. DNA methylation and small interfering RNAs (siRNAs) were not associated with the suppression of niv expression in HAM5. Insertion of a pair of transposons in close proximity can interfere with the expression of gene located between the two copies, and also provide evidence that this interference is not directly associated with pathways mediated by siRNAs. PMID:23190182

  12. Transfer of alien genes into cultivated wheat and triticale genotypes by the use of homoeologous pairing mutants

    International Nuclear Information System (INIS)

    Alien species, both wild and cultivated, can greatly help in broadening the genetic base of presently cultivated wheats, thanks to the large reservoir of useful genes they contain. However, introduction of substantial portions of alien genomes into cultivated genotypes in most cases makes them unfit for commercial use, due to the contemporary presence of positive and negative traits carried by the alien material. Therefore, what appears to be generally needed is to obtain transfers that include the shortest possible alien segment(s). Preliminary results are reported here of a work aimed at transferring to common wheat a gene for resistance to powdery mildew derived from Triticum longissimum, a diploid species with a very closely related genome to the B genome of polyploid wheats. As donor line a T. longissimum ditelosomic addition to Chinese Spring was used. The alien telo, bearing the resistance gene(s), corresponded to the short arm of chromosome G, whose homoeology with the group-3 chromosomes of common wheat had been established. A transfer scheme has been adopted that, within two generations of crosses, of which one with the ph1 mutant of Chinese Spring, provided plants having in single dose the alien telocentric, its wheat homoeologue and a 5B/ph1 chromosome. Such plants were then pollinated by the standard euploid for the recovery of recombinant types. The frequency of recombinant resistant plants detected so far suggests that the pairing frequency between the alien telo and its wheat homoeologues was quite high, most probably ranging between 25 and 30%, on an average. Extensive use is also being made of the ph1 6X triticale as one the parents in various wide crosses with different D genome sources, including common wheat and synthetic amphiploids. The results show that the ph1 mediated recombination is a promising method for triticale improvement. 18 refs, 1 fig, 2 tabs

  13. Reverse PCA, a systematic approach for identifying genes important for the physical interaction between protein pairs.

    Directory of Open Access Journals (Sweden)

    Ifat Lev

    Full Text Available Protein-protein interactions (PPIs are of central importance for many areas of biological research. Several complementary high-throughput technologies have been developed to study PPIs. The wealth of information that emerged from these technologies led to the first maps of the protein interactomes of several model organisms. Many changes can occur in protein complexes as a result of genetic and biochemical perturbations. In the absence of a suitable assay, such changes are difficult to identify, and thus have been poorly characterized. In this study, we present a novel genetic approach (termed "reverse PCA" that allows the identification of genes whose products are required for the physical interaction between two given proteins. Our assay starts with a yeast strain in which the interaction between two proteins of interest can be detected by resistance to the drug, methotrexate, in the context of the protein-fragment complementation assay (PCA. Using synthetic genetic array (SGA technology, we can systematically screen mutant libraries of the yeast Saccharomyces cerevisiae to identify those mutations that disrupt the physical interaction of interest. We were able to successfully validate this novel approach by identifying mutants that dissociate the conserved interaction between Cia2 and Mms19, two proteins involved in Iron-Sulfur protein biogenesis and genome stability. This method will facilitate the study of protein structure-function relationships, and may help in elucidating the mechanisms that regulate PPIs.

  14. TMPRSS2-ERG Gene Fusion Causing ERG Overexpression Precedes Chromosome Copy Number Changes in Prostate Carcinomas, Paired HGPIN Lesions

    Directory of Open Access Journals (Sweden)

    Nuno Cerveira

    2006-10-01

    Full Text Available TMPRSS2-ETS gene fusions have been found recurrently in prostate carcinomas, but not in the presumed precursor lesion, high-grade prostatic intraepithelial neoplasia (HGPIN. However, HGPIN lesions may share chromosomal changes with prostate cancer. To determine the relative order of genetic events in prostate carcinogenesis, we have analyzed 34 prostate carcinomas, 19 paired HGPIN lesions, 14 benign prostate hyperplasias, 11 morphologically normal prostatic tissues for TMPRSS2-ERG, TMPRSS2-ETV1 rearrangements, genomic imbalances. TMPRSS2 exon 1 was fused in-frame with ERG exon 4 in 17 of 34 (50% prostate carcinomas, in 4 of 19 (21% HGPIN lesions, but in none of controls. The findings were further validated by sequencing analysis, by the real-time polymerase chain reaction quantification of TMPRSS2-ERG fusion transcript, the ERG exons 5/6:exons 1/2 expression ratio. Chromosome copy number changes were detected by comparative genomic hybridization in 42% of clinically confined carcinomas, in none of the 16 HGPIN lesions analyzed. We demonstrate for the first time that the TMPRSS2-ERG fusion gene can be detected in a proportion of HGPIN lesions, that this molecular rearrangement is an early event that may precede chromosome-level alterations in prostate carcinogenesis.

  15. ProtocadherinX/Y, a candidate gene-pair for schizophrenia and schizoaffective disorder: a DHPLC investigation of genomic sequence.

    Science.gov (United States)

    Giouzeli, Maria; Williams, Nic A; Lonie, Lorne J; DeLisi, Lynn E; Crow, Timothy J

    2004-08-15

    Protocadherin X and Protocadherin Y (PCDHX and PCDHY) are cell-surface adhesion molecules expressed predominantly in the brain. The PCDHX/Y gene-pair was generated by an X-Y translocation approximately 3 million years ago (MYA) that gave rise to the Homo sapiens-specific region of Xq21.3 and Yp11.2 homology. Genes within this region are expected to code for sexually dimorphic human characteristics, including, for example, cerebral asymmetry a dimension of variation that has been suggested is relevant to psychosis. We examined differences in patients with schizophrenic or schizoaffective psychosis in the genomic sequence of PCDHX and PCDHY in coding and adjacent intronic sequences using denaturing high performance liquid chromatography (DHPLC). Three coding variants were detected in PCDHX and two in PCDHY. However, neither the coding variants nor the intronic polymorphisms could be related to psychosis within families. Low sequence variation suggests selective pressure against sequence change in modern humans in contrast to the structural chromosomal and sequence changes including fixed X-Y differences that occurred in this region earlier in hominid evolution. Our findings exclude sequence variation in PCDHX/Y as relevant to the aetiology of psychosis. However, we note the unusual status of this region with respect to X-inactivation. Further investigation of the epigenetic control of PCDHX/Y in relation to psychosis is warranted. PMID:15274028

  16. Towards a clinical practice guide in pharmacogenomics testing for functional polymorphisms of drug-metabolising enzymes. Gene/drug pairs and barriers perceived in Spain.

    Directory of Open Access Journals (Sweden)

    José A G Agúndez

    2012-11-01

    Full Text Available The development of clinical practice recommendations or guidelines for the clinical use of biomarkers is an issue of great importance with regard to adverse drug reactions. The potential of pharmacogenomic biomarkers has been extensively investigated in recent years. However, several barriers to implementing the use of pharmacogenomics testing exist. We conducted a survey among members of the Spanish Societies of Pharmacology and Clinical Pharmacology to obtain information about the perception of such barriers and to compare the perceptions of participants about the relative importance of major gene/drug pairs.Of 11 potential barriers, the highest importance was attributed to lack of institutional support for pharmacogenomics testing, and to the issues related to the lack of guidelines. Of the proposed gene/drug pairs the highest importance was assigned to HLA-B/abacavir, UGT1A1/irinotecan and CYP2D6/tamoxifen. In this perspective article we compare the relative importance of 29 gene/drug pairs in the Spanish study with that of the same pairs in the American Society for Clinical Pharmacology & Therapeutics study, and we provide suggestions and areas of focus to develop a guide for clinical practice in pharmacogenomics testing.

  17. Species-specific patterns of nonapeptide brain gene expression relative to pair-bonding behavior in grouping and non-grouping cichlids.

    Science.gov (United States)

    O'Connor, Constance M; Marsh-Rollo, Susan E; Aubin-Horth, Nadia; Balshine, Sigal

    2016-04-01

    Comparative studies have revealed that vasopressin-oxytocin pathways are associated with both pair bonding and grouping behavior. However, the relationship between pair bonding and grouping behavior remains unclear. In this study, our aim was to identify whether two species that differ in grouping behavior display a corresponding difference in their pair bonds, and in the underlying vasopressin-oxytocin hormonal pathways. Using two species of cichlid fishes, the highly social Neolamprologus pulcher and the non-social Telmatochromis temporalis, we measured proximity of pairs during pair bond formation, and then measured social behaviors (proximity, aggression, submission, affiliation) and brain gene expression of isotocin and arginine vasotocin (the teleost homologues of oxytocin and vasopressin, respectively), as well as their receptors, after a temporary separation and subsequent reunion of the bonded pairs. Pairs of the social species spent more time in close proximity relative to the non-social species. Rates of aggression increased in both species following the separation and reunion treatment, relative to controls that were not separated. Overall, whole brain expression of isotocin was higher in the social species relative to the non-social species, and correlated with proximity, submission, and affiliation, but only in the social species. Our results suggest that both a social and a non-social cichlid species have similar behavioral responses to a temporary separation from a mate, and we found no difference in the brain gene expression of measured hormones and receptors based on our separation-reunion treatment. However, our results highlight the importance of isotocin in mediating submissive and affiliative behaviors in cichlid fishes, and demonstrate that isotocin has species-specific correlations with socially relevant behaviors. PMID:26519858

  18. Pair Frames

    OpenAIRE

    Fereydooni, Abolhassan; Safapour, Ahmad

    2011-01-01

    In this paper a new concept related to the frame theory is introduced; the notion of pair frame. By investigating some properties of such frames, it is shown that pair frames are a generalization of ordinary frames. Some classes of of them are introduced such as (p, q)-pair frames and near identity pair frames.

  19. Transcription modulation in vitro of the fibroin gene exerted by a 200-base-pair region upstream from the "TATA" box.

    OpenAIRE

    Tsuda, M; Suzuki, Y

    1983-01-01

    We have previously reported that the 5'-flanking sequence upstream from the "TATA" box modulates the faithful transcription initiation of the fibroin gene in a homologous whole cell extract prepared from the silk glands, whereas such a modulating effect is not observed in a HeLa cell extract. Subsequently we have determined that major signals responsible for the modulating effect are located within a 200-base-pair region upstream from the TATA box, mainly in a distal region between nucleotide...

  20. Paired Box Gene 8-Peroxisome Proliferator-Activated Receptor-γ Fusion Protein and Loss of Phosphatase and Tensin Homolog Synergistically Cause Thyroid Hyperplasia in Transgenic Mice

    OpenAIRE

    Diallo-Krou, Ericka; Yu, Jingcheng; Colby, Lesley A.; Inoki, Ken; Wilkinson, John E.; Thomas, Dafydd G.; Giordano, Thomas J.; Koenig, Ronald J.

    2009-01-01

    Approximately 35% of follicular thyroid carcinomas and a small fraction of follicular adenomas are associated with a t(2;3)(q13;p25) chromosomal translocation that fuses paired box gene 8 (PAX8) with the peroxisome proliferator-activated receptor-γ gene (PPARG), resulting in expression of a PAX8-PPARγ fusion protein, PPFP. The mechanism by which PPFP contributes to follicular thyroid neoplasia is poorly understood. Therefore, we have created mice with thyroid-specific expression of PPFP. At 1...

  1. Structure and expression of a tandem gene pair in Leishmania donovani that encodes a protein structurally homologous to eucaryotic cation-transporting ATPases.

    OpenAIRE

    Meade, J C; Shaw, J; Lemaster, S; Gallagher, G.; Stringer, J R

    1987-01-01

    An oligonucleotide probe was used to clone a cation-transporting ATPase gene from the genome of Leishmania donovani. The nucleotide sequence of the gene contained a 2,922-base-pair open reading frame that was predicted to encode a 107,406-dalton protein composed of 974 amino acids. The predicted L. donovani protein contained all the structural and functional domains expected to be present in a cation-transporting ATPase of the aspartyl phosphate class. The nucleotide sequence encoding the ATP...

  2. Bridging cancer biology with the clinic: relative expression of a GRHL2-mediated gene-set pair predicts breast cancer metastasis.

    Directory of Open Access Journals (Sweden)

    Xinan Yang

    Full Text Available Identification and characterization of crucial gene target(s that will allow focused therapeutics development remains a challenge. We have interrogated the putative therapeutic targets associated with the transcription factor Grainy head-like 2 (GRHL2, a critical epithelial regulatory factor. We demonstrate the possibility to define the molecular functions of critical genes in terms of their personalized expression profiles, allowing appropriate functional conclusions to be derived. A novel methodology, relative expression analysis with gene-set pairs (RXA-GSP, is designed to explore the potential clinical utility of cancer-biology discovery. Observing that Grhl2-overexpression leads to increased metastatic potential in vitro, we established a model assuming Grhl2-induced or -inhibited genes confer poor or favorable prognosis respectively for cancer metastasis. Training on public gene expression profiles of 995 breast cancer patients, this method prioritized one gene-set pair (GRHL2, CDH2, FN1, CITED2, MKI67 versus CTNNB1 and CTNNA3 from all 2717 possible gene-set pairs (GSPs. The identified GSP significantly dichotomized 295 independent patients for metastasis-free survival (log-rank tested p = 0.002; severe empirical p = 0.035. It also showed evidence of clinical prognostication in another independent 388 patients collected from three studies (log-rank tested p = 3.3e-6. This GSP is independent of most traditional prognostic indicators, and is only significantly associated with the histological grade of breast cancer (p = 0.0017, a GRHL2-associated clinical character (p = 6.8e-6, Spearman correlation, suggesting that this GSP is reflective of GRHL2-mediated events. Furthermore, a literature review indicates the therapeutic potential of the identified genes. This research demonstrates a novel strategy to integrate both biological experiments and clinical gene expression profiles for extracting and elucidating the genomic

  3. Cloning and characterization of a pair of novel genes that regulate production of extracellular enzymes in Bacillus subtilis.

    OpenAIRE

    Pang, A S; Nathoo, S; Wong, S L

    1991-01-01

    Two novel Bacillus subtilis genes that regulate the production of several extracellular enzymes were clones and characterized. These two genes are organized as part of an operon. When cloned in a multicopy plasmid, the first gene (tenA, transcription enhancement) stimulates alkaline protease production at the transcriptional level. The second gene (tenI) exerts an opposite effect to reduce alkaline protease production. The production of neutral protease, levansucrase, and alkaline protease ca...

  4. Gene Expression Profiles in Paired Gingival Biopsies from Periodontitis-Affected and Healthy Tissues Revealed by Massively Parallel Sequencing

    OpenAIRE

    Davanian, Haleh; Stranneheim, Henrik; Båge, Tove; Lagervall, Maria; Jansson, Leif; Lundeberg, Joakim; Yucel-Lindberg, Tülay

    2012-01-01

    Periodontitis is a chronic inflammatory disease affecting the soft tissue and bone that surrounds the teeth. Despite extensive research, distinctive genes responsible for the disease have not been identified. The objective of this study was to elucidate transcriptome changes in periodontitis, by investigating gene expression profiles in gingival tissue obtained from periodontitis-affected and healthy gingiva from the same patient, using RNA-sequencing. Gingival biopsies were obtained from a d...

  5. A semi-supervised approach to extract pharmacogenomics-specific drug-gene pairs from biomedical literature for personalized medicine

    OpenAIRE

    Xu, Rong; Wang, QuanQiu

    2013-01-01

    Personalized medicine is to deliver the right drug to the right patient in the right dose. Pharmacogenomics (PGx) is to identify genetic variants that may affect drug efficacy and toxicity. The availability of a comprehensive and accurate PGx-specific drug-gene relationship knowledge base is important for personalized medicine. However, building a large-scale PGx-specific drug-gene knowledge base is a difficult task. In this study, we developed a bootstrapping, semi-supervised learning approa...

  6. Unusual properties of regulatory DNA from the Drosophila engrailed gene: three "pairing-sensitive" sites within a 1.6-kb region.

    Science.gov (United States)

    Kassis, J A

    1994-03-01

    We have previously shown that a 2-kb fragment of engrailed DNA can suppress expression of a linked marker gene, white, in the P element vector CaSpeR. This suppression is dependent on the presence of two copies of engrailed DNA-containing P elements (P[en]) in proximity in the Drosophila genome (either in cis or in trans). In this study, the 2-kb fragment was dissected and found to contain three fragments of DNA which could mediate white suppression [called "pairing-sensitive sites" (PS)]. A PS site was also identified in regulatory DNA from the Drosophila escargot gene. The eye colors of six different P[en] insertions in the escargot gene suggest an interaction between P[en]-encoded and genome-encoded PS sites. I hypothesize that white gene expression from P[en] is repressed by the formation of a protein complex which is initiated at the engrailed PS sites and also requires interactions with flanking genomic DNA. Genes were sought which influence the function of PS sites. Mutations in some Polycomb and trithorax group genes were found to affect the eye color from some P[en] insertion sites. However, different mutations affected expression from different P[en] insertion sites and no one mutation was found to affect expression from all P[en] insertion sites examined. These results suggest that white expression from P[en] is not directly regulated by members of the Polycomb and trithorax group genes, but in some cases can be influenced by them. I propose that engrailed PS sites normally act to promote interactions between distantly located engrailed regulatory sites and the engrailed promoter. PMID:8005412

  7. Typing of Neisseria gonorrhoeae Opa and NG-MAST Gene of 12 Pairs of Sexual Contact Gonorrhea Patients in China

    Institute of Scientific and Technical Information of China (English)

    Hongxiang CHEN; Jiawen LI; Zhihong WU; Rongyi CHEN; Li XU; Ying YU; Jun SHUAI; Juan LI; Ming TAN; Yating TU

    2008-01-01

    To identify the genomic species of Neisseria gonorrhoeae, evaluate the difference between two molecular epidemiological methods and examine the relationship between sex partners and genotypes of bacteria, 24 strains of Neisseria gonorrhoeae isolated from the outpatients with gonorrhea were identified by using the Opa genotyping and NG-MAST genotyping and the relationship between genotypes and phenotypes was studied. Twenty-four strains of Neisseria gonorrhoeae fell into 10 ST genotypes by NG-MAST genotyping, whereas these strains were classified into 12 OT Opa genotypes by Opa genotyping. A new epidemic strain of ST genotype (217-86% homologisation 178) in China was identified. It is concluded that genotypes of each pair of strains from a pair of patient/sex partner besides 45/46 are the same, indicating that contagious infection take place between patient and the sex partner. Opa genotyping was more effective than NG-MAST genotyping in identifying the genomic species of Neisseria gonorrhoeae. ST genotype could be further classified into different Opa-types.

  8. Constructing disease-specific gene networks using pair-wise relevance metric: Application to colon cancer identifies interleukin 8, desmin and enolase 1 as the central elements

    Directory of Open Access Journals (Sweden)

    Jiang Wei

    2008-08-01

    Full Text Available Abstract Background With the advance of large-scale omics technologies, it is now feasible to reversely engineer the underlying genetic networks that describe the complex interplays of molecular elements that lead to complex diseases. Current networking approaches are mainly focusing on building genetic networks at large without probing the interaction mechanisms specific to a physiological or disease condition. The aim of this study was thus to develop such a novel networking approach based on the relevance concept, which is ideal to reveal integrative effects of multiple genes in the underlying genetic circuit for complex diseases. Results The approach started with identification of multiple disease pathways, called a gene forest, in which the genes extracted from the decision forest constructed by supervised learning of the genome-wide transcriptional profiles for patients and normal samples. Based on the newly identified disease mechanisms, a novel pair-wise relevance metric, adjusted frequency value, was used to define the degree of genetic relationship between two molecular determinants. We applied the proposed method to analyze a publicly available microarray dataset for colon cancer. The results demonstrated that the colon cancer-specific gene network captured the most important genetic interactions in several cellular processes, such as proliferation, apoptosis, differentiation, mitogenesis and immunity, which are known to be pivotal for tumourigenesis. Further analysis of the topological architecture of the network identified three known hub cancer genes [interleukin 8 (IL8 (p ≈ 0, desmin (DES (p = 2.71 × 10-6 and enolase 1 (ENO1 (p = 4.19 × 10-5], while two novel hub genes [RNA binding motif protein 9 (RBM9 (p = 1.50 × 10-4 and ribosomal protein L30 (RPL30 (p = 1.50 × 10-4] may define new central elements in the gene network specific to colon cancer. Gene Ontology (GO based analysis of the colon cancer-specific gene network and

  9. MHC class I genes and extra-pair mating in a socially monogamous songbird, the Scarlet rosefinch (Carpodacus erythrinus)

    Czech Academy of Sciences Publication Activity Database

    Promerová, Marta; Schnitzer, J.; Bryja, Josef; Vinkler, M.; Munclinger, P.; Albrecht, Tomáš

    Turin : European Society for Evolutionary Biology , 2009. s. 37. [Eseb Congress /12./. 24.08.2009-29.08.2009, Turin] Institutional research plan: CEZ:AV0Z60930519 Keywords : major histocompatibility complex genes * scarlet rosefinch Subject RIV: EB - Genetics ; Molecular Biology http://www.eseb2009.it/cd/pdf/3-2_P.pdf

  10. Rapid pair-wise synteny analysis of large bacterial genomes using web-based GeneOrder4.0

    Directory of Open Access Journals (Sweden)

    Mahadevan Padmanabhan

    2010-02-01

    Full Text Available Abstract Background The growing whole genome sequence databases necessitate the development of user-friendly software tools to mine these data. Web-based tools are particularly useful to wet-bench biologists as they enable platform-independent analysis of sequence data, without having to perform complex programming tasks and software compiling. Findings GeneOrder4.0 is a web-based "on-the-fly" synteny and gene order analysis tool for comparative bacterial genomics (ca. 8 Mb. It enables the visualization of synteny by plotting protein similarity scores between two genomes and it also provides visual annotation of "hypothetical" proteins from older archived genomes based on more recent annotations. Conclusions The web-based software tool GeneOrder4.0 is a user-friendly application that has been updated to allow the rapid analysis of synteny and gene order in large bacterial genomes. It is developed with the wet-bench researcher in mind.

  11. Cyclic AMP regulation of the human glycoprotein hormone. cap alpha. -subunit gene is mediated by an 18-base-pair element

    Energy Technology Data Exchange (ETDEWEB)

    Silver, B.J.; Bokar, J.A.; Virgin, J.B.; Vallen, E.A.; Milsted, A.; Nilson, J.H.

    1987-04-01

    cAMP regulates transcription of the gene encoding the ..cap alpha..-subunit of human chorionic gonadotropin (hCG) in the choriocarcinoma cells (BeWo). To define the sequences required for regulation by cAMP, the authors inserted fragments from the 5' flanking region of the ..cap alpha..-subunit gene into a test vector containing the simian virus 40 early promoter (devoid of its enhancer) linked to the bacterial chloramphenicol acetyltransferase (CAT) gene. Results from transient expression assays in BeWo cells indicated that a 1500-base-pair (bp) fragment conferred cAMP responsiveness on the CAT gene regardless of position or orientation of the insert relative to the viral promoter. A subfragment extending from position -169 to position -100 had the same effect on cAMP-induced expression. Furthermore, the entire stimulatory effect could be achieved with an 18-bp synthetic oligodeoxynucleotide corresponding to a direct repeat between position -146 and -111. In the absence of cAMP, the ..cap alpha..-subunit 5' flanking sequence also enhanced transcription from the simian virus 40 early promoter. They localized this enhancer activity to the same -169/-100 fragment containing the cAMP response element. The 18-bp element alone, however, had no effect on basal expression. Thus, this short DNA sequence serves as a cAMP response element and also functions independently of other promoter-regulatory elements located in the 5' flanking sequence of the ..cap alpha..-subunit gene.

  12. The Wnt and Delta-Notch signalling pathways interact to direct pair-rule gene expression via caudal during segment addition in the spider Parasteatoda tepidariorum.

    Science.gov (United States)

    Schönauer, Anna; Paese, Christian L B; Hilbrant, Maarten; Leite, Daniel J; Schwager, Evelyn E; Feitosa, Natália Martins; Eibner, Cornelius; Damen, Wim G M; McGregor, Alistair P

    2016-07-01

    In short-germ arthropods, posterior segments are added sequentially from a segment addition zone (SAZ) during embryogenesis. Studies in spiders such as Parasteatoda tepidariorum have provided insights into the gene regulatory network (GRN) underlying segment addition, and revealed that Wnt8 is required for dynamic Delta (Dl) expression associated with the formation of new segments. However, it remains unclear how these pathways interact during SAZ formation and segment addition. Here, we show that Delta-Notch signalling is required for Wnt8 expression in posterior SAZ cells, but represses the expression of this Wnt gene in anterior SAZ cells. We also found that these two signalling pathways are required for the expression of the spider orthologues of even-skipped (eve) and runt-1 (run-1), at least in part via caudal (cad). Moreover, it appears that dynamic expression of eve in this spider does not require a feedback loop with run-1, as is found in the pair-rule circuit of the beetle Tribolium Taken together, our results suggest that the development of posterior segments in Parasteatoda is directed by dynamic interactions between Wnt8 and Delta-Notch signalling that are read out by cad, which is necessary but probably not sufficient to regulate the expression of eve and run-1 Our study therefore provides new insights towards better understanding the evolution and developmental regulation of segmentation in other arthropods, including insects. PMID:27287802

  13. Performance, serum amino acid concentrations and expression of selected genes in pair-fed growing pigs exposed to high ambient temperatures.

    Science.gov (United States)

    Morales, A; Grageola, F; García, H; Arce, N; Araiza, B; Yáñez, J; Cervantes, M

    2014-10-01

    Heat stress (HS) depresses pig performance mainly because of appetite reduction, although other factors involved in the cellular availability of nutrients may also contribute to that depression. An experiment was conducted with twelve pair-fed pigs (30.3 ± 2.7 kg BW) to examine the effect of severe HS (up to 45 °C) on the expression of genes coding for two cationic amino acid (AA) transporters (b(0,+) AT and CAT-1), leptin, heat-shock protein (Hsp-90) and myosin in several tissues; serum concentrations (SC) of AA; and performance. There were two treatments: Comfort, pigs housed at an average temperature of 22 (±2) °C; and HS, pigs housed in a similar room with no climate control, where temperature was raised up to 45 °C. All pigs received the same wheat-soybean meal diet and had similar daily feed intake. Comfort pigs had a higher daily gain and better gain/feed ratio than HS pigs (p pigs. The SC of Lys and Met in HS pigs were around 55% and 20%, respectively, of that in Comfort pigs (p pigs. These results suggest that HS-related changes in gene expression affect the performance of pigs beyond the effect caused by the reduction in voluntary feed intake. PMID:24393083

  14. Rapid genotyping assays for the 4-base pair deletion of canine MDR1/ABCB1 gene and low frequency of the mutant allele in Border Collie dogs.

    Science.gov (United States)

    Mizukami, Keijiro; Chang, Hye-Sook; Yabuki, Akira; Kawamichi, Takuji; Hossain, Mohammad A; Rahman, Mohammad M; Uddin, Mohammad M; Yamato, Osamu

    2012-01-01

    P-glycoprotein, encoded by the MDR1 or ABCB1 gene, is an integral component of the blood-brain barrier as an efflux pump for xenobiotics crucial in limiting drug uptake into the central nervous system. Dogs homozygous for a 4-base pair deletion of the canine MDR1 gene show altered expression or function of P-glycoprotein, resulting in neurotoxicosis after administration of the substrate drugs. In the present study, the usefulness of microchip electrophoresis for genotyping assays detecting this deletion mutation was evaluated. Mutagenically separated polymerase chain reaction (MS-PCR) and real-time PCR assays were newly developed and evaluated. Furthermore, a genotyping survey was carried out in a population of Border Collies dogs in Japan to determine the allele frequency in this breed. Microchip electrophoresis showed advantages in detection sensitivity and time saving over other modes of electrophoresis. The MS-PCR assay clearly discriminated all genotypes. Real-time PCR assay was most suitable for a large-scale survey due to its high throughput and rapidity. The genotyping survey demonstrated that the carrier and mutant allele frequencies were 0.49% and 0.25%, respectively, suggesting that the mutant allele frequency in Border Collies is markedly low compared to that in the susceptible dog breeds such as rough and smooth Collies. PMID:22362942

  15. Genetic Analysis Using an Isogenic Mating Pair of Aspergillus fumigatus Identifies Azole Resistance Genes and Lack of MAT Locus's Role in Virulence.

    Science.gov (United States)

    Losada, Liliana; Sugui, Janyce A; Eckhaus, Michael A; Chang, Yun C; Mounaud, Stephanie; Figat, Abigail; Joardar, Vinita; Pakala, Suman B; Pakala, Suchitra; Venepally, Pratap; Fedorova, Natalie; Nierman, William C; Kwon-Chung, Kyung J

    2015-04-01

    Invasive aspergillosis (IA) due to Aspergillus fumigatus is a major cause of mortality in immunocompromised patients. The discovery of highly fertile strains of A. fumigatus opened the possibility to merge classical and contemporary genetics to address key questions about this pathogen. The merger involves sexual recombination, selection of desired traits, and genomics to identify any associated loci. We constructed a highly fertile isogenic pair of A. fumigatus strains with opposite mating types and used them to investigate whether mating type is associated with virulence and to find the genetic loci involved in azole resistance. The pair was made isogenic by 9 successive backcross cycles of the foundational strain AFB62 (MAT1-1) with a highly fertile (MAT1-2) progeny. Genome sequencing showed that the F9 MAT1-2 progeny was essentially identical to the AFB62. The survival curves of animals infected with either strain in three different animal models showed no significant difference, suggesting that virulence in A. fumigatus was not associated with mating type. We then employed a relatively inexpensive, yet highly powerful strategy to identify genomic loci associated with azole resistance. We used traditional in vitro drug selection accompanied by classical sexual crosses of azole-sensitive with resistant isogenic strains. The offspring were plated under varying drug concentrations and pools of resulting colonies were analyzed by whole genome sequencing. We found that variants in 5 genes contributed to azole resistance, including mutations in erg11A (cyp51A), as well as multi-drug transporters, erg25, and in HMG-CoA reductase. The results demonstrated that with minimal investment into the sequencing of three pools from a cross of interest, the variation(s) that contribute any phenotype can be identified with nucleotide resolution. This approach can be applied to multiple areas of interest in A. fumigatus or other heterothallic pathogens, especially for virulence

  16. Affected-sib-pair mapping of a novel susceptibility gene to insulin-dependent diabetes mellitus (IDDM8) on chromosome 6q25-q27

    Energy Technology Data Exchange (ETDEWEB)

    Luo, D.F.; Bui, M.M.; Muir, A. [Univ. of Florida, Gainesville, FL (United States)] [and others

    1995-10-01

    Affected-sib-pair analyses were performed using 104 Caucasian families to map genes that predispose to insulin-dependent diabetes mellitus (IDDM). We have obtained linkage evidence for D6S446 (maximum lod score [MLS] = 2.8) and for D6S264 (MLS = 2.0) on 6q25q27. Together with a previously reported data set, linkage can be firmly established (MLS = 3.4 for D6S264), and the disease locus has been designated IDDM8. With analysis of independent families, we confirmed linkage evidence for the previously identified IDDM3 (15q) and DDM7 (2q). We also typed additional markers in the regions containing IDDM3, IDDM4, IDDM5, and IDDM8. Preliminary linkage evidence for a novel region on chromosome 4q (D4S1566) has been found in 47 Florida families (P < .03). We also found evidence of linkage for two regions previously identified as potential linkages in the Florida subset: D3S1303 on 3q (P < .04) and D7S486 on 7q (P < .03). We could not confirm linkage with eight other regions (D1S191, D1S412, D4S1604, D8S264, D8S556, D1OS193, D13S158, and D18S64) previously identified as potential linkages. 26 refs., 1 fig., 4 tabs.

  17. [A Pair of Siblings with Frontotemporal Dementia and Amyotrophic Lateral Sclerosis and a Novel Thr462Lysfs Mutation in the TBK1 Gene].

    Science.gov (United States)

    Schönecker, S; Brendel, M; van der Zee, J; van Broeckhoven, C; Rominger, A; Danek, A; Levin, J

    2016-08-01

    We report on a pair of siblings with frontotemporal dementia (FTD) and amyotrophic lateral sclerosis (ALS) and a novel Thr462Lysfs mutation in the TANK-binding kinase 1 (TBK1) gene identified through the European Early-Onset Dementia Consortium. The patients presented at the age of 77 and 75 years and displayed dementia and bulbar symptoms as well as progressive paresis. After a progressive course, both of them died only a few months after diagnosis. Most recently, TBK1 mutations were identified in patients with FTD and ALS. A loss of expression of the mutant allele, leading to 50 % reduced TBK1 protein levels, seems to be causative. The occurrence of TBK1 mutations in FTD and ALS underlines the fact that FTD and ALS are part of the same disease spectrum. For future therapeutic trials, characterization of TBK1 mutation carriers in presymptomatic cohorts, such as the genetic frontotemporal dementia initiative (GENFI), is of great importance. PMID:27570907

  18. Construction and characterization of new piggyBac vectors for constitutive or inducible expression of heterologous gene pairs and the identification of a previously unrecognized activator sequence in piggyBac

    Directory of Open Access Journals (Sweden)

    Hollister Jason R

    2007-01-01

    Full Text Available Abstract Background We constructed and characterized several new piggyBac vectors to provide transposition of constitutively- or inducibly-expressible heterologous gene pairs. The dual constitutive control element consists of back-to-back copies of a baculovirus immediate early (ie1 promoter separated by a baculovirus enhancer (hr5. The dual inducible control element consists of back-to-back copies of a minimal cytomegalovirus (CMVmin promoter separated by a synthetic operator (TetO7, which drives transcription in the presence of a mutant transcriptional repressor plus tetracycline. Results Characterization of these vectors revealed an unexpected position effect, in which heterologous genes adjacent to the 3'- terminal region ("rightward" genes were consistently expressed at higher levels than those adjacent to the 5'-terminal region ("leftward" genes of the piggyBac element. This position effect was observed with all six heterologous genes examined and with both transcriptional control elements. Further analysis demonstrated that this position effect resulted from stimulation of rightward gene expression by the internal domain sequence of the 3'-terminal region of piggyBac. Inserting a copy of this sequence into the 5'- terminal repeat region of our new piggyBac vectors in either orientation stimulated leftward gene expression. Representative piggyBac vectors designed for constitutive or inducible expression of heterologous gene pairs were shown to be functional as insect transformation vectors. Conclusion This study is significant because (a it demonstrates the utility of a strategy for the construction of piggyBac vectors that can provide constitutive or inducible heterologous gene pair expression and (b it reveals the presence of a previously unrecognized transcriptional activator in piggyBac, which is an important and increasingly utilized transposable element.

  19. Mutations in the paired domain of the human PAX3 gene cause Klein-Waardenburg syndrome (WS-III) as well as Waardenburg syndrome type I (WS-I)

    Energy Technology Data Exchange (ETDEWEB)

    Hoth, C.F.; Milunsky, A.; Lipsky, N.; Baldwin, C.T. (Boston Univ. School of Medicine, MA (United States)); Sheffer, R. (Hadassah-Hebrew Univ. Medical Center, Jerusalem (Israel)); Clarren, S.K. (Univ. of Washington School of Medicine, Seattle (United States))

    1993-03-01

    Waardenburg syndrome type I (WS-I) is an autosomal dominant disorder characterized by sensorineural hearing loss, dystopia canthorum, pigmentary disturbances, and other developmental defects. Klein-Waardenburg syndrome (WS-III) is a disorder with many of the same characteristics as WS-I and includes musculoskeletal abnormalities. The authors have recently reported the identification and characterization of one of the first gene defects, in the human PAX3 gene, which causes WS-I. PAX3 is a DNA-binding protein that contains a structural motif known as the paired domain and is believed to regulate the expression of other genes. In this report they describe two new mutations, in the human PAX3 gene, that are associated with WS. One mutation was found in a family with WS-I, while the other mutation was found in a family with WS-III. Both mutations were in the highly conserved paired domain of the human PAX3 gene and are similar to other mutations that cause WS. The results indicate that mutations in the PAX3 gene can cause both WS-I and WS-III. 36 refs., 4 figs.

  20. Expression of the pair-rule gene homologs runt, Pax3/7, even-skipped-1 and even-skipped-2 during larval and juvenile development of the polychaete annelid Capitella teleta does not support a role in segmentation

    Directory of Open Access Journals (Sweden)

    Seaver Elaine C

    2012-04-01

    Full Text Available Abstract Background Annelids and arthropods each possess a segmented body. Whether this similarity represents an evolutionary convergence or inheritance from a common segmented ancestor is the subject of ongoing investigation. Methods To investigate whether annelids and arthropods share molecular components that control segmentation, we isolated orthologs of the Drosophila melanogaster pair-rule genes, runt, paired (Pax3/7 and eve, from the polychaete annelid Capitella teleta and used whole mount in situ hybridization to characterize their expression patterns. Results When segments first appear, expression of the single C. teleta runt ortholog is only detected in the brain. Later, Ct-runt is expressed in the ventral nerve cord, foregut and hindgut. Analysis of Pax genes in the C. teleta genome reveals the presence of a single Pax3/7 ortholog. Ct-Pax3/7 is initially detected in the mid-body prior to segmentation, but is restricted to two longitudinal bands in the ventral ectoderm. Each of the two C. teleta eve orthologs has a unique and complex expression pattern, although there is partial overlap in several tissues. Prior to and during segment formation, Ct-eve1 and Ct-eve2 are both expressed in the bilaterial pair of mesoteloblasts, while Ct-eve1 is expressed in the descendant mesodermal band cells. At later stages, Ct-eve2 is expressed in the central and peripheral nervous system, and in mesoderm along the dorsal midline. In late stage larvae and adults, Ct-eve1 and Ct-eve2 are expressed in the posterior growth zone. Conclusions C. teleta eve, Pax3/7 and runt homologs all have distinct expression patterns and share expression domains with homologs from other bilaterians. None of the pair-rule orthologs examined in C. teleta exhibit segmental or pair-rule stripes of expression in the ectoderm or mesoderm, consistent with an independent origin of segmentation between annelids and arthropods.

  1. Sequences more than 500 base pairs upstream of the human U3 small nuclear RNA gene stimulate the synthesis of U3 RNA in frog oocytes

    International Nuclear Information System (INIS)

    Small nuclear RNA (snRNA) genes contain strong promoters capable of initiating transcription once every 4 s. Studies on the human U1 snRNA gene, carried out in other laboratories, showed that sequences within 400 bp of the 5' flanking region are sufficient for maximal levels of transcription both in vivo and in frog oocytes [reviewed in Dahlberg and Lund (1988)]. The authors studied the expression of a human U3 snRNA gene by injecting 5' deletion mutants into frog oocytes. The results show that sequences more than 500 bp upstream of the U3 snRNA gene have a 2-3-fold stimulatory effect on the U3 snRNA synthesis. These results indicate that the human U3 snRNA gene is different from human U1 snRNA gene in containing regulatory elements more than 500 bp upstream. The U3 snRNA gene upstream sequences contain an AluI homologous sequence in the -1,200 region; these AluI sequences were transcribed in vitro and in frog oocytes but were not detectable in Hela cells

  2. A gene pair from the human major histocompatibility complex encodes large proline-rich proteins with multiple repeated motifs and a single ubiquitin-like domain.

    OpenAIRE

    Banerji, J.; Sands, J; Strominger, J.L.; Spies, T

    1990-01-01

    A large number of genes has been identified previously between the class I and class II gene families within the class III region of the human major histocompatibility complex. The complete sequences of two of these genes, BAT2 and BAT3 (where BAT is HLA-B-associated transcript), which are closely linked, were determined from cDNA clones. The putative BAT2 and BAT3 proteins are 228 and 110 kDa, respectively, and do not appear to be members of any known family of proteins. However, BAT3 contai...

  3. Adjoint of Pair Frames

    OpenAIRE

    Fereydooni, Abolhassan; Safapour, Ahmad; Rahimi , Asghar

    2012-01-01

    The concept of (p,q)-pair frames is generalized to (l,l^*)-pair frames. Adjoint (conjugate) of a pair frames for dual space of a Banach space is introduced and some conditions for the existence of adjoint (conjugate) of pair frames are presented.

  4. Gene expression in subcutaneous adipose tissue differs in women with polycystic ovary syndrome and controls matched pair-wise for age, body weight, and body mass index

    OpenAIRE

    Mannerås-Holm, Louise; Benrick, Anna; Stener-Victorin, Elisabet

    2014-01-01

    Adipose tissue dysfunction may be a central factor in the pathogenesis of insulin resistance in women with polycystic ovary syndrome (PCOS). Gene expression in subcutaneous adipose tissue in PCOS and its relation to metabolic and endocrine features of the syndrome have been fragmentarily investigated. The aim was to assess in subcutaneous adipose tissue the expression of genes potentially associated with adipose tissue dysfunction and to explore their relation to features of the syndrome. Twe...

  5. Insights into the evolutionary history of tubercle bacilli as disclosed by genetic rearrangements within a PE_PGRS duplicated gene pair

    Directory of Open Access Journals (Sweden)

    Kurepina Natalia

    2006-12-01

    Full Text Available Abstract Background The highly homologous PE_PGRS (Proline-glutamic acid_polymorphic GC-rich repetitive sequence genes are members of the PE multigene family which is found only in mycobacteria. PE genes are particularly abundant within the genomes of pathogenic mycobacteria where they seem to have expanded as a result of gene duplication events. PE_PGRS genes are characterized by their high GC content and extensive repetitive sequences, making them prone to recombination events and genetic variability. Results Comparative sequence analysis of Mycobacterium tuberculosis genes PE_PGRS17 (Rv0978c and PE_PGRS18 (Rv0980c revealed a striking genetic variation associated with this typical tandem duplicate. In comparison to the M. tuberculosis reference strain H37Rv, the variation (named the 12/40 polymorphism consists of an in-frame 12-bp insertion invariably accompanied by a set of 40 single nucleotide polymorphisms (SNPs that occurs either in PE_PGRS17 or in both genes. Sequence analysis of the paralogous genes in a representative set of worldwide distributed tubercle bacilli isolates revealed data which supported previously proposed evolutionary scenarios for the M. tuberculosis complex (MTBC and confirmed the very ancient origin of "M. canettii" and other smooth tubercle bacilli. Strikingly, the identified polymorphism appears to be coincident with the emergence of the post-bottleneck successful clone from which the MTBC expanded. Furthermore, the findings provide direct and clear evidence for the natural occurrence of gene conversion in mycobacteria, which appears to be restricted to modern M. tuberculosis strains. Conclusion This study provides a new perspective to explore the molecular events that accompanied the evolution, clonal expansion, and recent diversification of tubercle bacilli.

  6. Infectious Laryngotracheitis Herpesvirus Expresses a Related Pair of Unique Nuclear Proteins Which Are Encoded by Split Genes Located at the Right End of the UL Genome Region

    Science.gov (United States)

    Ziemann, Katharina; Mettenleiter, Thomas C.; Fuchs, Walter

    1998-01-01

    Avian infectious laryngotracheitis virus (ILTV) possesses an alphaherpesvirus type D DNA genome of ca. 155 kbp. Completion of our previous sequence analyses (W. Fuchs and T. C. Mettenleiter, J. Gen. Virol. 77:2221–2229, 1996) of the right end of the unique long (UL) genome region revealed the presence of two adjacent, presumably ILTV-specific genes, which were named UL0 and UL[−1] because of their location upstream of the conserved UL1 (glycoprotein L) gene. Transcriptional analyses showed that both genes are abundantly expressed during the late phase of the viral replication cycle and that both mRNAs are spliced by the removal of short introns close to their 5′ ends. Furthermore, the deduced gene products exhibit a moderate but significant homology of 28% to each other. The newly identified ILTV genes encode proteins of 63 kDa (UL0) and 73 kDa (UL[−1]), which both are predominantly localized in the nuclei of virus infected chicken cells. In summary, our results indicate that duplication of a spliced ILTV-specific gene encoding a nuclear protein has occurred during evolution of ILTV. PMID:9658136

  7. Pairing dynamics and the origin of species

    OpenAIRE

    Puebla, Oscar; Bermingham, Eldredge; Guichard, Frédéric

    2011-01-01

    Whether sexual selection alone can drive the evolution of assortative mating in the presence of gene flow is a long-standing question in evolutionary biology. Here, we report a role for pairing dynamics of individuals when mate choice is mutual, which is sufficient for the evolution of assortative mating by sexual selection alone in the presence of gene flow. Through behavioural observation, individual-based simulation and population genetic analysis, we evaluate the pairing dynamics of coral...

  8. Infectious Laryngotracheitis Herpesvirus Expresses a Related Pair of Unique Nuclear Proteins Which Are Encoded by Split Genes Located at the Right End of the UL Genome Region

    OpenAIRE

    Ziemann, Katharina; Mettenleiter, Thomas C.; Fuchs, Walter

    1998-01-01

    Avian infectious laryngotracheitis virus (ILTV) possesses an alphaherpesvirus type D DNA genome of ca. 155 kbp. Completion of our previous sequence analyses (W. Fuchs and T. C. Mettenleiter, J. Gen. Virol. 77:2221–2229, 1996) of the right end of the unique long (UL) genome region revealed the presence of two adjacent, presumably ILTV-specific genes, which were named UL0 and UL[−1] because of their location upstream of the conserved UL1 (glycoprotein L) gene. Transcriptional analyses showed th...

  9. Power of non-parametric linkage analysis in mapping genes contributing to human longevity in long-lived sib-pairs

    DEFF Research Database (Denmark)

    Tan, Qihua; Zhao, J H; Iachine, I;

    2004-01-01

    to assess the statistical power for different genetic (allele frequency and risk) and heterogeneity parameters under various sampling schemes (age-cut and sample size). Based on the genotype-specific survival function, we derived a heritability calculation as an overall measurement for the effect of...... causal genes with different parameter settings so that the power can be compared for different modes (dominant, recessive) of inheritance. Our results show that the ASP approach is a powerful tool in mapping very strong effect genes, both dominant and recessive. To map a rare dominant genetic variation...

  10. Over half of breakpoints in gene pairs involved in cancer-specific recurrent translocations are mapped to human chromosomal fragile sites

    OpenAIRE

    Pierce Levi CT; Williams Laura E; Burrow Allison A; Wang Yuh-Hwa

    2009-01-01

    Abstract Background Gene rearrangements such as chromosomal translocations have been shown to contribute to cancer development. Human chromosomal fragile sites are regions of the genome especially prone to breakage, and have been implicated in various chromosome abnormalities found in cancer. However, there has been no comprehensive and quantitative examination of the location of fragile sites in relation to all chromosomal aberrations. Results Using up-to-date databases containing all cancer...

  11. Expression of interferon regulatory factor 6, muscle segment homeobox 1, paired box gene 9, homeo box B3, and related to tyrosine kinases in human cleft-affected tissue

    Directory of Open Access Journals (Sweden)

    Benita Krivicka-Uzkurele

    2016-01-01

    Full Text Available Background and Aim: Recent studies demonstrate direct roles of different genes during formation of secondary palate, but there are no still data about local expression and distribution of gene products in cleft palate affected human tissue. Thus, the aim of our study was to investigate cleft disordered cartilage and bone for detection of local expression of key regulators of palatogenesis and its correlations. Materials and Methods: The study involved 16 patients with unilateral cleft lip and palate. Tissue samples were proceeded for detection of interferon regulatory factor 6 (IRF6, muscle segment homeobox 1 (MSX1, paired box gene 9 (PAX9, homeo box B3 (HOXB3, and related to tyrosine kinases with biotin-streptavidin immunohistochemistry. Distribution of immunoreactive structures was detected semiquantitatively. Statistical analysis included the Mann-Whitney test and Pearson′s correlation test. Results: Statistically significant differences were found between expression of IGFR6, MSX1, and HOXB3 in the cartilage and bone. We also detected statistically significant correlation between the expressions of PAX9 and MSX1 in the bone tissue. Conclusions: Cleft lip and palate disordered cartilage is characterized by more pronounced expression of IRF6, MSX1, and PAX9. Expression of HOXB3 is more characteristic for cleft lip and palate affected bone. Considered as a whole, our results suggest that the cleft lip and palate affected cartilage seems more plastic in tissue remodeling what can probably result in qualitative postoperative tissue reconstruction.

  12. Identification of a common reference gene pair for qPCR in human mesenchymal stromal cells from different tissue sources treated with VEGF

    DEFF Research Database (Denmark)

    Tratwal, Josefine; Follin, Bjarke; Ekblond, Annette; Kastrup, Jens; Haack-Sørensen, Mandana

    2014-01-01

    ASCs are manifold and in vitro pretreatment of the cells with growth factors has been applied to potentially enhance these properties. When characterizing the transcriptional activity of these cellular mechanisms in vitro it is important to consider the effect of the growth factor treatment on......BACKGROUND: Human mesenchymal stromal cells from the bone marrow (BMSCs) are widely used as experimental regenerative treatment of ischemic heart disease, and the first clinical trials using adipose-derived stromal cells (ASCs) are currently being conducted. Regenerative mechanisms of BMSCs and...... reference genes (RGs) for the normalization of qPCR data. RESULTS: BMSCs and ASCs were stimulated with vascular endothelial growth factor A-165 (VEGF) for one week, and compared with un-stimulated cells from the same donor. The stability of nine RGs through VEGF treatment as well as the donor variation was...

  13. Development of a PCR Assay Based on a Single-Base Pair Substitution for the Detection of Aeromonas caviae by Targeting the gyrB Gene.

    Science.gov (United States)

    Payattikul, Penpan; Longyant, Siwaporn; Sithigorngul, Paisarn; Chaivisuthangkura, Parin

    2015-09-01

    Aeromonas caviae is a bacterial pathogen that causes various infectious diseases in both humans and animals. To facilitate its detection, we developed species-specific primer sets targeting polymorphisms in the gyrB gene for use in a PCR assay. The technique was able to detect 100% (29/29) of the A. caviae strains tested using either of two sets of primers (designated ACF1-ACR and ACF3-ACR), which produced 293-bp and 206-bp amplicons, respectively. Another set of primers (designated ACF2-ACR) yielded a 237-bp amplicon and exhibited 90% (26/29) positive results with respect to A. caviae. None of the primer sets exhibited cross-reactivity with 12 non-A. caviae isolates and 52 other non-Aeromonas bacteria. The detection limit using the ACF2-ACR and ACF3-ACR primer sets in pure culture was 1.6 × 10(3) CFU/mL, or 6 CFU per reaction, whereas that of the ACF1-ACR primer set was 1.6 × 10(4) CFU/mL, or 60 CFU per reaction. In the case of spiked Nile Tilapia Oreochromis niloticus, the sensitivity of all primer sets without enrichment was 1.8 × 10(4) CFU/g, or 30 CFU per reaction. Primer set ACF3-ACR was the best for a PCR assay targeting the gyrB gene, and the PCR technique developed was rapid, specific, and sensitive for the identification of A. caviae. PMID:26223267

  14. Identification of a New Rice Blast Resistance Gene, Pid3, by Genomewide Comparison of Paired Nucleotide-Binding Site–Leucine-Rich Repeat Genes and Their Pseudogene Alleles Between the Two Sequenced Rice Genomes

    OpenAIRE

    Shang, Junjun; Tao, Yong; Chen, Xuewei; Zou, Yan; Lei, Cailin; Wang, Jing; Li, Xiaobing; Zhao, Xianfeng; Zhang, Meijun; Lu, Zhike; Xu, Jichen; Cheng, Zhukuan; Wan, Jianmin; Zhu, Lihuang

    2009-01-01

    Rice blast, caused by Magnaporthe oryzae, is one of the most devastating diseases. The two major subspecies of Asian cultivated rice (Oryza sativa L.), indica and japonica, have shown obvious differences in rice blast resistance, but the genomic basis that underlies the difference is not clear. We performed a genomewide comparison of the major class of resistant gene family, the nucleotide-binding site–leucine-rich repeat (NBS–LRR) gene family, between 93-11 (indica) and Nipponbare (japonica)...

  15. Secure pairing with biometrics

    NARCIS (Netherlands)

    Buhan, I.R.; Boom, B.J.; Doumen, J.M.; Hartel, P.H.; Veldhuis, R.N.J.

    2009-01-01

    Secure pairing enables two devices that share no prior context with each other to agree upon a security association, which they can use to protect their subsequent communication. Secure pairing offers guarantees of the association partner identity and it should be resistant to eavesdropping and to a

  16. Critical Schwinger Pair Production.

    Science.gov (United States)

    Gies, Holger; Torgrimsson, Greger

    2016-03-01

    We investigate Schwinger pair production in spatially inhomogeneous electric backgrounds. A critical point for the onset of pair production can be approached by fields that marginally provide sufficient electrostatic energy for an off-shell long-range electron-positron fluctuation to become a real pair. Close to this critical point, we observe features of universality which are analogous to continuous phase transitions in critical phenomena with the pair-production rate serving as an order parameter: electric backgrounds can be subdivided into universality classes and the onset of pair production exhibits characteristic scaling laws. An appropriate design of the electric background field can interpolate between power-law scaling, essential Berezinskii-Kosterlitz-Thouless-type scaling, and a power-law scaling with log corrections. The corresponding critical exponents only depend on the large-scale features of the electric background, whereas the microscopic details of the background play the role of irrelevant perturbations not affecting criticality. PMID:26991162

  17. Supernovae in paired galaxies

    CERN Document Server

    Nazaryan, T A; Hakobyan, A A; Adibekyan, V Zh; Kunth, D; Mamon, G A; Turatto, M; Aramyan, L S

    2013-01-01

    We investigate the influence of close neighbor galaxies on the properties of supernovae (SNe) and their host galaxies using 56 SNe located in pairs of galaxies with different levels of star formation (SF) and nuclear activity. The mean distance of type II SNe from nuclei of hosts is greater by about a factor of 2 than that of type Ibc SNe. For the first time it is shown that SNe Ibc are located in pairs with significantly smaller difference of radial velocities between components than pairs containing SNe Ia and II. We consider this as a result of higher star formation rate (SFR) of these closer systems of galaxies. SN types are not correlated with the luminosity ratio of host and neighbor galaxies in pairs. The orientation of SNe with respect to the preferred direction toward neighbor galaxy is found to be isotropic and independent of kinematical properties of the galaxy pair.

  18. Electron pairing without superconductivity

    Science.gov (United States)

    Levy, Jeremy

    Strontium titanate (SrTiO3) is the first and best known superconducting semiconductor. It exhibits an extremely low carrier density threshold for superconductivity, and possesses a phase diagram similar to that of high-temperature superconductors--two factors that suggest an unconventional pairing mechanism. Despite sustained interest for 50 years, direct experimental insight into the nature of electron pairing in SrTiO3 has remained elusive. Here we perform transport experiments with nanowire-based single-electron transistors at the interface between SrTiO3 and a thin layer of lanthanum aluminate, LaAlO3. Electrostatic gating reveals a series of two-electron conductance resonances--paired electron states--that bifurcate above a critical pairing field Bp of about 1-4 tesla, an order of magnitude larger than the superconducting critical magnetic field. For magnetic fields below Bp, these resonances are insensitive to the applied magnetic field; for fields in excess of Bp, the resonances exhibit a linear Zeeman-like energy splitting. Electron pairing is stable at temperatures as high as 900 millikelvin, well above the superconducting transition temperature (about 300 millikelvin). These experiments demonstrate the existence of a robust electronic phase in which electrons pair without forming a superconducting state. Key experimental signatures are captured by a model involving an attractive Hubbard interaction that describes real-space electron pairing as a precursor to superconductivity. Support from AFOSR, ONR, ARO, NSF, DOE and NSSEFF is gratefully acknowledged.

  19. Subradiant split Cooper pairs

    OpenAIRE

    Cottet, Audrey; Kontos, Takis; Yeyati, Alfredo Levy

    2011-01-01

    We suggest a way to characterize the coherence of the split Cooper pairs emitted by a double-quantum-dot based Cooper pair splitter (CPS), by studying the radiative response of such a CPS inside a microwave cavity. The coherence of the split pairs manifests in a strongly nonmonotonic variation of the emitted radiation as a function of the parameters controlling the coupling of the CPS to the cavity. The idea to probe the coherence of the electronic states using the tools of Cavity Quantum Ele...

  20. Gene

    Data.gov (United States)

    U.S. Department of Health & Human Services — Gene integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes,...

  1. Au pair trajectories

    DEFF Research Database (Denmark)

    Dalgas, Karina Märcher

    2015-01-01

    workers from the global South, the first article demonstrates how Facebook can be a fruitful methodological tool in the aspiration to open up the research to new themes of inquiry. However, rather than disregarding the au pairs’ economic problems, the dissertation shows how their family participation and......Since 2000, thousands of young Filipino migrants have come to Denmark as au pairs. Officially, they are there to “broaden their cultural horizons” by living temporarily with a Danish host family, but they also conduct domestic labor in exchange for food and money, which allows them to send...... pair-sending families in the Philippines, this dissertation examines the long-term trajectories of these young Filipinas. It shows how the au pairs’ local and transnational family relations develop over time and greatly influence their life trajectories. A focal point of the study is how au pairs...

  2. Supernovae in paired galaxies

    CERN Document Server

    Nazaryan, T A; Hakobyan, A A; Adibekyan, V Zh; Kunth, D; Mamon, G A; Turatto, M; Aramyan, L S

    2013-01-01

    We investigate the influence of close neighbor galaxies on the properties of supernovae (SNe) and their host galaxies using 56 SNe located in pairs of galaxies with different levels of star formation (SF) and nuclear activity. The mean distance of type II SNe from nuclei of hosts is greater by about a factor of 2 than that of type Ibc SNe. The distributions and mean distances of SNe are consistent with previous results compiled with the larger sample. For the first time it is shown that SNe Ibc are located in pairs with significantly smaller difference of radial velocities between components than pairs containing SNe Ia and II. We consider this as a result of higher star formation rate (SFR) of these closer systems of galaxies.

  3. Hadronic lepton pair production

    International Nuclear Information System (INIS)

    The author describes a beam dump experiment at the CERN SPS for the study of μ pair production by π+-, K+-, and p(anti p) beams on a copper target at 39.5 GeV/c. The dependence of the cross sections from various parameters is discussed. (HSI)

  4. Paired fuzzy sets

    DEFF Research Database (Denmark)

    Rodríguez, J. Tinguaro; Franco de los Ríos, Camilo; Gómez, Daniel;

    2015-01-01

    In this paper we want to stress the relevance of paired fuzzy sets, as already proposed in previous works of the authors, as a family of fuzzy sets that offers a unifying view for different models based upon the opposition of two fuzzy sets, simply allowing the existence of different types of...

  5. PANDAseq: paired-end assembler for illumina sequences

    OpenAIRE

    Masella Andre P; Bartram Andrea K; Truszkowski Jakub M; Brown Daniel G; Neufeld Josh D

    2012-01-01

    Abstract Background Illumina paired-end reads are used to analyse microbial communities by targeting amplicons of the 16S rRNA gene. Publicly available tools are needed to assemble overlapping paired-end reads while correcting mismatches and uncalled bases; many errors could be corrected to obtain higher sequence yields using quality information. Results PANDAseq assembles paired-end reads rapidly and with the correction of most errors. Uncertain error corrections come from reads with many lo...

  6. Coulomb pair-creation

    International Nuclear Information System (INIS)

    Electron-positron pair production in strong Coulomb fields is outlined. It is shown that the singular behaviour of the adiabatic basis can be removed if solutions of the time dependent external field Dirac equation are used as a basis to expand the fermion field operator. This latter 'asymptotic basis' makes it possible to introduce Feynman-propagator. Applying the reduction technique, the computation of all of the basic quantities can be reduced to the solution of an integral equation. The positron spectrum for separable potential model with Lorentzian time dependence and for potential jump is analyzed in the pole approximation. (author)

  7. Physiological aspects of paired stimulation

    NARCIS (Netherlands)

    Meijler, F.L.; Durrer, D.

    1965-01-01

    In this paper some physiological and clinical aspects of paired stimulation are discussed. I) The augmenting effect of paired stimulation on rnyocardial contractility is due to potentiation (increase in speed of restitution) and fusion of two contractions. 2) While using paired stimulation the oxyg

  8. Parallel computation of cryptographic pairings

    International Nuclear Information System (INIS)

    The efficiency of multiprocessor systems for pairing computation has been estimated. Various schemes of efficient implementation of Miller's algorithm for computations of Weyl and Tate pairings in a multiprocessor computing system have been considered. The complexity of pairing computation in uniprocessor and multiprocessor computing systems has been theoretically estimated

  9. Cotorsion Pair Extensions

    Institute of Scientific and Technical Information of China (English)

    De Xu ZHOU

    2009-01-01

    Assume that S is an almost excellent extension of R. Using functors Hom R(S,-) and -(×)R S, we establish some connections between classes of modules (L)R and (L)S, cotorsion pairs ((A)R, (A)R)and ((A)S, (B)S). If (L)S is a T-extension or (and) H-extension of (L)R, we show that (L)S is a (resp., monomorphic, epimorphic, special) preenveloping class if and only if so is (L)R. If (S, S) is a TH-extension of ((A)R,(B)R), we obtain that ((A)S,(B)S) is complete (resp., of finite type, of cofinite type, hereditary, perfect, n-tilting) if and only if so is ((A)R,(B)R).

  10. Pairing in hadron structure

    International Nuclear Information System (INIS)

    A many-body approach to hadron structure is presented, in which we consider two parton species: spin-0 (b-partons), and spin-1/2 (f-partons). We extend a boson and a fermion pairing scheme for the b-, and f-partons respectively, into a Yang-Mills gauge theory. The main feature of this theory is that the gauge field is not identified with the usual gluon field variable in QCD. We study the confinement problem of the hadron constituents, and obtain, for low temperatures, partons that are confined by energy gaps. As the critical temperatures for the corresponding phase transitions are approached, the energy gap gradually disappears, and confinement is lost. The theory goes beyond the non-relativistic harmonic oscillator quark model, in the sense of giving physical reasons why a non-relativistic approximation is adequate in describing the internal dynamics of hadron structure. (author)

  11. Multiprocessor switch with selective pairing

    Energy Technology Data Exchange (ETDEWEB)

    Gara, Alan; Gschwind, Michael K; Salapura, Valentina

    2014-03-11

    System, method and computer program product for a multiprocessing system to offer selective pairing of processor cores for increased processing reliability. A selective pairing facility is provided that selectively connects, i.e., pairs, multiple microprocessor or processor cores to provide one highly reliable thread (or thread group). Each paired microprocessor or processor cores that provide one highly reliable thread for high-reliability connect with a system components such as a memory "nest" (or memory hierarchy), an optional system controller, and optional interrupt controller, optional I/O or peripheral devices, etc. The memory nest is attached to a selective pairing facility via a switch or a bus

  12. Multiple origins of asteroid pairs

    Science.gov (United States)

    Jacobson, Seth A.

    2016-01-01

    Rotationally fissioned asteroids produce unbound asteroid pairs that have very similar heliocentric orbits. Backward integration of their current heliocentric orbits provides an age of closest proximity that can be used to date the rotational fission event. Most asteroid pairs follow a predicted theoretical relationship between the primary spin period and the mass ratio of the two pair members that is a direct consequence of the YORP-induced rotational fission hypothesis. If the progenitor asteroid has strength, asteroid pairs may have higher mass ratios or faster rotating primaries. However, the process of secondary fission leaves the originally predicted trend unaltered. We also describe the characteristics of pair members produced by four alternative routes from a rotational fission event to an asteroid pair. Unlike direct formation from the event itself, the age of closest proximity of these pairs cannot generally be used to date the rotational fission event since considerable time may have passed.

  13. Does Gene Translocation Accelerate the Evolution of Laterally Transferred Genes?

    OpenAIRE

    Hao, Weilong; Golding, G. Brian

    2009-01-01

    Lateral gene transfer (LGT) and gene rearrangement are essential for shaping bacterial genomes during evolution. Separate attention has been focused on understanding the process of lateral gene transfer and the process of gene translocation. However, little is known about how gene translocation affects laterally transferred genes. Here we have examined gene translocations and lateral gene transfers in closely related genome pairs. The results reveal that translocated genes undergo elevated ra...

  14. Stereo Pair, Honolulu, Oahu

    Science.gov (United States)

    2000-01-01

    Honolulu, on the island of Oahu, is a large and growing urban area. This stereoscopic image pair, combining a Landsat image with topography measured by the Shuttle Radar Topography Mission (SRTM), shows how topography controls the urban pattern. This color image can be viewed in 3-D by viewing the left image with the right eye and the right image with the left eye (cross-eyed viewing), or by downloading and printing the image pair, and viewing them with a stereoscope.Features of interest in this scene include Diamond Head (an extinct volcano near the bottom of the image), Waikiki Beach (just above Diamond Head), the Punchbowl National Cemetary (another extinct volcano, near the image center), downtown Honolulu and Honolulu harbor (image left-center), and offshore reef patterns. The slopes of the Koolau mountain range are seen in the right half of the image. Clouds commonly hang above ridges and peaks of the Hawaiian Islands, but in this synthesized stereo rendition appear draped directly on the mountains. The clouds are actually about 1000 meters (3300 feet) above sea level.This stereoscopic image pair was generated using topographic data from the Shuttle Radar Topography Mission, combined with a Landsat 7 Thematic Mapper image collected at the same time as the SRTM flight. The topography data were used to create two differing perspectives, one for each eye. When stereoscopically merged, the result is a vertically exaggerated view of the Earth's surface in its full three dimensions. The United States Geological Survey's Earth Resources Observations Systems (EROS) Data Center, Sioux Falls, South Dakota, provided the Landsat data.The Shuttle Radar Topography Mission (SRTM), launched on February 11, 2000, used the same radar instrument that comprised the Spaceborne Imaging Radar-C/X-Band Synthetic Aperture Radar (SIR-C/X-SAR) that flew twice on the Space Shuttle Endeavour in 1994. The mission was designed to collect three-dimensional measurements of the Earth

  15. Stereo Pair, Pasadena, California

    Science.gov (United States)

    2000-01-01

    This stereoscopic image pair is a perspective view that shows the western part of the city of Pasadena, California, looking north toward the San Gabriel Mountains. Portions of the cities of Altadena and La Canada Flintridge are also shown. The cluster of large buildings left of center, at the base of the mountains, is the Jet Propulsion Laboratory. This image shows the power of combining data from different sources to create planning tools to study problems that affect large urban areas. In addition to the well-known earthquake hazards, Southern California is affected by a natural cycle of fire and mudflows. Data shown in this image can be used to predict both how wildfires spread over the terrain and how mudflows are channeled down the canyons.The image was created from three datasets: the Shuttle Radar Topography Mission (SRTM) supplied the elevation, U. S. Geological Survey digital aerial photography provided the image detail, and the Landsat Thematic Mapper provided the color. The United States Geological Survey's Earth Resources Observations Systems (EROS) Data Center, Sioux Falls, South Dakota, provided the Landsat data and the aerial photography. The image can be viewed in 3-D by viewing the left image with the right eye and the right image with the left eye (cross-eyed viewing), or by downloading and printing the image pair, and viewing them with a stereoscope.The Shuttle Radar Topography Mission (SRTM), launched on February 11, 2000, used the same radar instrument that comprised the Spaceborne Imaging Radar-C/X-Band Synthetic Aperture Radar (SIR-C/X-SAR) that flew twice on the Space Shuttle Endeavour in 1994. The mission was designed to collect three-dimensional measurements of the Earth's surface. To collect the 3-D data, engineers added a 60-meter-long (200-foot) mast, an additional C-band imaging antenna and improved tracking and navigation devices. The mission is a cooperative project between the National Aeronautics and Space Administration (NASA

  16. Pairing the Volcano

    CERN Document Server

    Ionica, Sorina

    2011-01-01

    Isogeny volcanoes are graphs whose vertices are elliptic curves and whose edges are $\\ell$-isogenies. Algorithms allowing to travel on these graphs were developed by Kohel in his thesis (1996) and later on, by Fouquet and Morain (2001). However, up to now, no method was known, to predict, before taking a step on the volcano, the direction of this step. Hence, in Kohel's and Fouquet-Morain algorithms, many steps are taken before choosing the right direction. In particular, ascending or horizontal isogenies are usually found using a trial-and-error approach. In this paper, we propose an alternative method that efficiently finds all points $P$ of order $\\ell$ such that the subgroup generated by $P$ is the kernel of an horizontal or an ascending isogeny. In many cases, our method is faster than previous methods. This is an extended version of a paper published in the proceedings of ANTS 2010. In addition, we treat the case of 2-isogeny volcanoes and we derive from the group structure of the curve and the pairing ...

  17. Multiple origins of asteroid pairs

    CERN Document Server

    Jacobson, Seth A

    2015-01-01

    Rotationally fissioned asteroids produce unbound daughter asteroids that have very similar heliocentric orbits. Backward integration of their current heliocentric orbits provides an age of closest proximity that can be used to date the rotational fission event. Most asteroid pairs follow a predicted theoretical relationship between the primary spin period and the mass ratio of the two pair members that is a direct consequence of the YORP-induced rotational fission hypothesis. If the progenitor asteroid has strength, asteroid pairs may have high mass ratios with possibly fast rotating primaries. However, secondary fission leaves the originally predicted trend unaltered. We also describe the characteristics of pair members produced by four alternative routes from a rotational fission event to an asteroid pair. Unlike direct formation from the event itself, the age of closest proximity of these pairs cannot generally be used to date the rotational fission event since considerable time may have passed.

  18. Cooper pairs in atomic nuclei

    International Nuclear Information System (INIS)

    We describe recent efforts to study Cooper pairs in atomic nuclei. We consider a self-consistent Hartree Fock mean field for the even Sm isotopes and compare results based on three treatments of pairing correlations: a BCS treatment, a number-projected BCS treatment and an exact treatment using the Richardson Ansatz. Significant differences are seen in the pairing correlation energies. Furthermore, because it does not average over the properties of the fermion pairs, the Richardson solution permits a more meaningful definition of the Cooper wave function and of the fraction of pairs that are collective. Our results confirm that only a few pairs near the Fermi surface in realistic atomic nuclei are collective. (Author)

  19. Cooper pairs in atomic nuclei

    Energy Technology Data Exchange (ETDEWEB)

    Pittel, S. [Bartol Research Institute and Department of Physics and Astronomy, University of Delaware, Newark, 19716 Delaware (United States); Dussel, G. G. [Departamento de Fisica J.J. Giambiagi, Universidad de Buenos Aires, 1428 Buenos Aires (Argentina); Dukelsky, J.; Sarriguren, P. [Instituto de Estructura de la Materia, CSIC, Serrano 123, 28006 Madrid (Spain)

    2008-12-15

    We describe recent efforts to study Cooper pairs in atomic nuclei. We consider a self-consistent Hartree Fock mean field for the even Sm isotopes and compare results based on three treatments of pairing correlations: a BCS treatment, a number-projected BCS treatment and an exact treatment using the Richardson Ansatz. Significant differences are seen in the pairing correlation energies. Furthermore, because it does not average over the properties of the fermion pairs, the Richardson solution permits a more meaningful definition of the Cooper wave function and of the fraction of pairs that are collective. Our results confirm that only a few pairs near the Fermi surface in realistic atomic nuclei are collective. (Author)

  20. Nanoampere pumping of Cooper pairs

    OpenAIRE

    Vartiainen, Juha J.; Möttönen, Mikko; Pekola, Jukka P.; Kemppinen, Antti

    2007-01-01

    The authors have employed a tunable Cooper-pair transistor, the sluice, with radio frequency control to pump current over a resistive circuit. They find that the charge transferred per pumping cycle can be controlled with the resolution of a single Cooper pair up to hundreds of pairs. The achieved nanoampere current features more than an order of magnitude improvement over the previously reported results and it is close to the theoretical maximum value for the measured sample.

  1. Nanoampere pumping of Cooper pairs

    OpenAIRE

    Vartiainen, Juha J.; Mottonen, Mikko; Pekola, Jukka; Kemppinen, Antti

    2006-01-01

    We have employed a tunable Cooper-pair transistor, the sluice, with radio frequency control to pump current over a resistive circuit. We find that the charge transferred per pumping cycle can be controlled with the resolution of a single Cooper-pair up to hundreds of pairs. The achieved nanoampere current features more than an order of magnitude improvement over the previously reported results and it is close to the theoretical maximum value for the measured sample.

  2. Controversies in kidney paired donation.

    Science.gov (United States)

    Gentry, Sommer E; Montgomery, Robert A; Segev, Dorry L

    2012-07-01

    Kidney paired donation represented 10% of living kidney donation in the United States in 2011. National registries around the world and several separate registries in the United States arrange paired donations, although with significant variations in their practices. Concerns about ethical considerations, clinical advisability, and the quantitative effectiveness of these approaches in paired donation result in these variations. For instance, although donor travel can be burdensome and might discourage paired donation, it was nearly universal until convincing analysis showed that living donor kidneys can sustain many hours of cold ischemia time without adverse consequences. Opinions also differ about whether the last donor in a chain of paired donation transplants initiated by a nondirected donor should donate immediately to someone on the deceased donor wait-list (a domino or closed chain) or should be asked to wait some length of time and donate to start another sequence of paired donations later (an open chain); some argue that asking the donor to donate later may be coercive, and others focus on balancing the probability that the waiting donor withdraws versus the number of additional transplants if the chain can be continued. Other controversies in paired donation include simultaneous versus nonsimultaneous donor operations, whether to enroll compatible pairs, and interactions with desensitization protocols. Efforts to expand public awareness of and participation in paired donation are needed to generate more transplant opportunities. PMID:22732046

  3. Pair Production by Ultraintense Lasers

    International Nuclear Information System (INIS)

    We consider the production of electron-positron pairs by the interaction of relativistic superthermal electrons, generated by ultraintense laser pulses, with high-Z material. We discuss the laser and target parameters required in order to optimize the pair-production rate. We explore the regime when the pairs, if sufficiently confined, can start to exponentiate in number and explore the feasibility of achieving a pair density approaching 1021cm-3 , (1) /(50) th that of solid-ion density. copyright 1998 The American Physical Society

  4. Cooper pairs in atomic nuclei

    CERN Document Server

    Dussel, G G; Dukelsky, J; Sarriguren, P

    2007-01-01

    We consider the development of Cooper pairs in a self-consistent Hartree Fock mean field for the even Sm isotopes. Results are presented at the level of a BCS treatment, a number-projected BCS treatment and an exact treatment using the Richardson ansatz. While projected BCS captures much of the pairing correlation energy that is absent from BCS, it still misses a sizable correlation energy, typically of order $1 MeV$. Furthermore, because it does not average over the properties of the fermion pairs, the exact Richardson solution permits a more meaningful definition of the Cooper wave function and of the fraction of pairs that are collective.

  5. Mutations in the paired domain of the human PAX3 gene cause Klein-Waardenburg syndrome (WS-III) as well as Waardenburg syndrome type I (WS-I).

    OpenAIRE

    Hoth, C F; Milunsky, A; Lipsky, N; Sheffer, R; Clarren, S K; Baldwin, C T

    1993-01-01

    Waardenburg syndrome type I (WS-I) is an autosomal dominant disorder characterized by sensorineural hearing loss, dystopia canthorum, pigmentary disturbances, and other developmental defects. Klein-Waardenburg syndrome (WS-III) is a disorder with many of the same characteristics as WS-I and includes musculoskeletal abnormalities. We have recently reported the identification and characterization of one of the first gene defects, in the human PAX3 gene, which causes WS-I. PAX3 is a DNA-binding ...

  6. The Simplex in Pair Comparisons

    Science.gov (United States)

    Bloxom, Bruce

    1972-01-01

    Paper develops a model which expresses pair comparisons as a function of (a) affective values which form a perfect simplex, (b) systematic (constant over replications) deviations from the simplex-structured affective values, and (c) errors of measurement for the pair comparisons. (Author)

  7. Kramers Pairs in Configuration Interaction

    DEFF Research Database (Denmark)

    Avery, John Scales; Avery, James Emil

    2003-01-01

    The theory of symmetry-preserving Kramers pair creation operators is reviewed and formulas for applying these operators to configuration interaction calculations are derived. A new and more general type of symmetry-preserving pair creation operator is proposed and shown to commute with the total...

  8. Pairing anti-halo effect

    International Nuclear Information System (INIS)

    We discuss pairing correlations in weakly bound neutron rich nuclei, by using the coordinate-space Hartree-Fock-Bogolyubov approach which allows to take properly into account the coupling to particle continuum. We show that the additional pairing binding energy acts against a development of an infinite rms radius, even in situations when an l=0 single-particle orbital becomes unbound. (author)

  9. PERIODIC COMPLEMENTARY BINARY SEQUENCE PAIRS

    Institute of Scientific and Technical Information of China (English)

    XuChengqian; ZhaoXiaoqun

    2002-01-01

    A new set of binary sequences-Periodic Complementary Binary Sequence Pair (PCSP)is proposed .A new class of block design-Difference Family Pair (DFP)is also proposed .The relationship between PCSP and DFP,the properties and exising conditions of PCSP and the recursive constructions for PCSP are given.

  10. PERIODIC COMPLEMENTARY BINARY SEQUENCE PAIRS

    Institute of Scientific and Technical Information of China (English)

    Xu Chengqian; Zhao Xiaoqun

    2002-01-01

    A new set of binary sequences-Periodic Complementary Binary Sequence Pair (PCSP) is proposed. A new class of block design-Difference Family Pair (DFP) is also proposed.The relationship between PCSP and DFP, the properties and existing conditions of PCSP and the recursive constructions for PCSP are given.

  11. Assessment Strategies for Pair Programming

    Science.gov (United States)

    Hahn, Jan Hendrik; Mentz, Elsa; Meyer, Lukas

    2009-01-01

    Although pair programming has proved its usefulness in teaching and learning programming skills, it is difficult to assess the individual roles and abilities of students whilst programming in pairs. (Note that within this manuscript, the term assessment refers to evaluating individual student performance.) Assessing only the outcomes of a pair…

  12. Property (RD) for Hecke Pairs

    Energy Technology Data Exchange (ETDEWEB)

    Shirbisheh, Vahid, E-mail: shirbisheh@gmail.com

    2012-06-15

    As the first step towards developing noncommutative geometry over Hecke C{sup Asterisk-Operator }-algebras, we study property (RD) (Rapid Decay) for Hecke pairs. When the subgroup H in a Hecke pair (G, H) is finite, we show that the Hecke pair (G, H) has (RD) if and only if G has (RD). This provides us with a family of examples of Hecke pairs with property (RD). We also adapt Paul Jolissant's works in Jolissaint (J K-Theory 2:723-735, 1989; Trans Amer Math Soc 317(1):167-196, 1990) to the setting of Hecke C{sup Asterisk-Operator }-algebras and show that when a Hecke pair (G, H) has property (RD), the algebra of rapidly decreasing functions on the set of double cosets is closed under holomorphic functional calculus of the associated (reduced) Hecke C{sup Asterisk-Operator }-algebra. Hence they have the same K{sub 0}-groups.

  13. Property (RD) for Hecke Pairs

    Science.gov (United States)

    Shirbisheh, Vahid

    2012-06-01

    As the first step towards developing noncommutative geometry over Hecke C ∗-algebras, we study property (RD) (Rapid Decay) for Hecke pairs. When the subgroup H in a Hecke pair ( G, H) is finite, we show that the Hecke pair ( G, H) has (RD) if and only if G has (RD). This provides us with a family of examples of Hecke pairs with property (RD). We also adapt Paul Jolissant's works in Jolissaint (J K-Theory 2:723-735, 1989; Trans Amer Math Soc 317(1):167-196, 1990) to the setting of Hecke C ∗-algebras and show that when a Hecke pair ( G, H) has property (RD), the algebra of rapidly decreasing functions on the set of double cosets is closed under holomorphic functional calculus of the associated (reduced) Hecke C ∗-algebra. Hence they have the same K 0-groups.

  14. Structural requirements for trans activation of human immunodeficiency virus type 1 long terminal repeat-directed gene expression by tat: importance of base pairing, loop sequence, and bulges in the tat-responsive sequence.

    OpenAIRE

    Roy, S.; Parkin, N T; Rosen, C; Itovitch, J; Sonenberg, N

    1990-01-01

    In order to elucidate the molecular mechanisms of action of the tat-responsive sequence, mutational analysis of the tat-responsive sequence was carried out. The most critical region comprised nucleotides +18 to +44 and included the 3-nucleotide bulge at positions +23 to +25, the loop sequence, and an intact stem. In addition, base pairing up to nucleotide +52 was required for the full magnitude of the trans-activation response. Single-nucleotide bulges at positions +5 to +17 were dispensable....

  15. Pairing correlations in exotic nuclei

    CERN Document Server

    Sagawa, H

    2012-01-01

    The BCS and HFB theories which can accommodate the pairing correlations in the ground states of atomic nuclei are presented. As an application of the pairing theories, we investigate the spatial extension of weakly bound Ne and C isotopes by taking into account the pairing correlation with the Hartree-Fock-Bogoliubov (HFB) method and a 3-body model, respectively. We show that the odd-even staggering in the reaction cross sections of $^{30,31,32}$Ne and $^{14,15,16}$C are successfully reproduced, and thus the staggering can be attributed to the unique role of pairing correlations in nuclei far from the stability line. A correlation between a one-neutron separation energy and the anti-halo effect is demonstrated for $s$- and p-waves using the HFB wave functions. We also propose effective density-dependent pairing interactions which reproduce both the neutron-neutron ($nn$) scattering length at zero density and the neutron pairing gap in uniform matter. Then, we apply these interactions to study pairing gaps in ...

  16. Viscosity coefficient with pairing interaction

    International Nuclear Information System (INIS)

    In the study of dynamic process (for example, deep-inelastic scattering of heavy ion, nuclear fission), viscosity, which describes the coupling between the intrinsic degrees of freedom and the collective one, is a basic quantity. In this paper, under BCS approximation, we derive a microscopic expression of viscosity coefficient with pairing interaction by means of a linear response theory. Taking the fission process of 236U as an example, we discuss the effect of pairing interaction on the viscosity coefficient. The results show that pairing interaction must be taken into account at lower temperature and can be neglected at a high-temperature region

  17. Pairing mechanisms for binary stars

    CERN Document Server

    Kouwenhoven, M B N; Goodwin, S P; Zwart, S F Portegies; Kaper, L; 10.1002/asna.200811061

    2008-01-01

    Knowledge of the binary population in stellar groupings provides important information about the outcome of the star forming process in different environments. Binarity is also a key ingredient in stellar population studies and is a prerequisite to calibrate the binary evolution channels. In these proceedings we present an overview of several commonly used methods to pair individual stars into binary systems, which we refer to as the pairing function. Many pairing functions are frequently used by observers and computational astronomers, either for the mathematical convenience, or because they roughly describe the expected outcome of the star forming process. We discuss the consequences of each pairing function for the interpretation of observations and numerical simulations. The binary fraction and mass ratio distribution generally depend strongly on the selection of the range in primary spectral type in a sample. These quantities, when derived from a binary survey with a mass-limited sample of target stars, ...

  18. Pairing effects in Sn isotopes

    International Nuclear Information System (INIS)

    An extensive study of pairing effects in the Sn isotopes is carried out. The pairing Hamiltonian is treated by the chain-calculation method which provides practically exact solutions while involving less computational work than a complete-basis diagonalization. The coupling strength is fixed by reproducing the energy of the 9- state in 116Sn, while the single-particle energies have been determined by an analysis of the experimental low-energy spectra of the odd-A isotopes. A detailed comparison of the calculated results with experimental data evidences the importance of neutron pairing correlations in the 50-82 shell. The results of this paper complement those of our previous study of the N=82 isotones. It turns out that the role of pairing correlations is similar to a large extent in both cases. (orig.)

  19. Pairing effects in Sn isotopes

    Energy Technology Data Exchange (ETDEWEB)

    Andreozzi, F. [Naples Univ. (Italy). Dipt. di Scienze Fisiche]|[Istituto Nazionale di Fisica Nucleare, Naples (Italy); Coraggio, L. [Naples Univ. (Italy). Dipt. di Scienze Fisiche]|[Istituto Nazionale di Fisica Nucleare, Naples (Italy); Covello, A. [Naples Univ. (Italy). Dipt. di Scienze Fisiche]|[Istituto Nazionale di Fisica Nucleare, Naples (Italy); Gargano, A. [Naples Univ. (Italy). Dipt. di Scienze Fisiche]|[Istituto Nazionale di Fisica Nucleare, Naples (Italy); Porrino, A. [Naples Univ. (Italy). Dipt. di Scienze Fisiche]|[Istituto Nazionale di Fisica Nucleare, Naples (Italy)

    1996-04-01

    An extensive study of pairing effects in the Sn isotopes is carried out. The pairing Hamiltonian is treated by the chain-calculation method which provides practically exact solutions while involving less computational work than a complete-basis diagonalization. The coupling strength is fixed by reproducing the energy of the 9{sup -} state in {sup 116}Sn, while the single-particle energies have been determined by an analysis of the experimental low-energy spectra of the odd-A isotopes. A detailed comparison of the calculated results with experimental data evidences the importance of neutron pairing correlations in the 50-82 shell. The results of this paper complement those of our previous study of the N=82 isotones. It turns out that the role of pairing correlations is similar to a large extent in both cases. (orig.)

  20. Pseudogap associated with precursor pairing

    OpenAIRE

    De Cao, Tian

    2009-01-01

    This work argues that the off-diagonal long range order (ODLRO) is not necessary for showing superconductivity while the electron pairing around Fermi surface is sufficient for superconductivity. It is shown that there exists the pseudogap state associated with the electron pairing in real space and the high temperature superconductivity could be only found in the metallic region near the Mott metal insulator transition (MIT).

  1. Pair programming: more than just working together in pairs.

    Directory of Open Access Journals (Sweden)

    Elsa Mentz

    2012-03-01

    Full Text Available Pair programming originated in the industry where focus is placed on the development of a programme at the most costand time-effective manner, and within the parameters of quality. In this context, a specific programming code is not developed individually; rather, two people work together in order to ensure a higher quality programming code and to motivate each other to work at a faster pace. The problem with this approach was that novice programmers lacked the social skills to work in pairs as they had not been exposed to this sufficiently at tertiary level. The demand of the industry, especially in terms of programmers needing to be able to programme together, led to the incorporation of pair programming at tertiary level in the late nineties. The pedagogical principles on which any teaching-learning strategy should be built were, however, largely overlooked during this process. This article firstly looks into the semantic and ontological differences between co-operative and collaborative learning and secondly argues that pair programming, within the context of a social constructivist approach to teaching and learning, can be seen as a co-operative teaching-learning strategy. Pair programming is more than just allowing two students to work together on a programming task. The more structured way, in which pair programming needs to be implemented, concur with the principles of co-operative learning. The article concludes that the correct pedagogical application of pair programming as a co-operative teaching-learning strategy in tertiary education will result in improved learning capital.

  2. The unusual 23S rRNA gene of Coxiella burnetii: two self-splicing group I introns flank a 34-base-pair exon, and one element lacks the canonical omegaG.

    Science.gov (United States)

    Raghavan, Rahul; Miller, Scott R; Hicks, Linda D; Minnick, Michael F

    2007-09-01

    We describe the presence and characteristics of two self-splicing group I introns in the sole 23S rRNA gene of Coxiella burnetii. The two group I introns, Cbu.L1917 and Cbu.L1951, are inserted at sites 1917 and 1951 (Escherichia coli numbering), respectively, in the 23S rRNA gene of C. burnetii. Both introns were found to be self-splicing in vivo and in vitro even though the terminal nucleotide of Cbu.L1917 is adenine and not the canonical conserved guanine, termed OmegaG, found in Cbu.L1951 and all other group I introns described to date. Predicted secondary structures for both introns were constructed and revealed that Cbu.L1917 and Cbu.L1951 were group IB2 and group IA3 introns, respectively. We analyzed strains belonging to eight genomic groups of C. burnetii to determine sequence variation and the presence or absence of the elements and found both introns to be highly conserved (>/=99%) among them. Although phylogenetic analysis did not identify the specific identities of donors, it indicates that the introns were likely acquired independently; Cbu.L1917 was acquired from other bacteria like Thermotoga subterranea and Cbu.L1951 from lower eukaryotes like Acanthamoeba castellanii. We also confirmed the fragmented nature of mature 23S rRNA in C. burnetii due to the presence of an intervening sequence. The presence of three selfish elements in C. burnetii's 23S rRNA gene is very unusual for an obligate intracellular bacterium and suggests a recent shift to its current lifestyle from a previous niche with greater opportunities for lateral gene transfer. PMID:17644584

  3. Evolutionary Transitions of MicroRNA-Target Pairs

    KAUST Repository

    Nozawa, Masafumi

    2016-04-27

    How newly generated microRNA (miRNA) genes are integrated into gene regulatory networks during evolution is fundamental in understanding the molecular and evolutionary bases of robustness and plasticity in gene regulation. A recent model proposed that after the birth of a miRNA, the miRNA is generally integrated into the network by decreasing the number of target genes during evolution. However, this decreasing model remains to be carefully examined by considering in vivo conditions. In this study, we therefore compared the number of target genes among miRNAs with different ages, combining experiments with bioinformatics predictions. First, we focused on three Drosophila miRNAs with different ages. As a result, we found that an older miRNA has a greater number of target genes than a younger miRNA, suggesting the increasing number of targets for each miRNA during evolution (increasing model). To further confirm our results, we also predicted all target genes for all miRNAs in D. melanogaster, considering co-expression of miRNAs and mRNAs in vivo. The results obtained also do not support the decreasing model but are reasonably consistent with the increasing model of miRNA-target pairs. Furthermore, our large-scale analyses of currently available experimental data of miRNA-target pairs also showed a weak but the same trend in humans. These results indicate that the current decreasing model of miRNA-target pairs should be reconsidered and the increasing model may be more appropriate to explain the evolutionary transitions of miRNA-target pairs in many organisms.

  4. Pair extended coupled cluster doubles

    CERN Document Server

    Henderson, Thomas M; Scuseria, Gustavo E

    2015-01-01

    The accurate and efficient description of strongly correlated systems remains an important challenge for computational methods. Doubly occupied configuration interaction (DOCI), in which all electrons are paired and no correlations which break these pairs are permitted, can in many cases provide an accurate account of strong correlations, albeit at combinatorial computational cost. Recently, there has been significant interest in a method we refer to as pair coupled cluster doubles (pCCD), a variant of coupled cluster doubles in which the electrons are paired. This is simply because pCCD provides energies nearly identical to those of DOCI, but at mean-field computational cost (disregarding the cost of the two-electron integral transformation). Here, we introduce the more complete pair extended coupled cluster doubles (pECCD) approach which, like pCCD, has mean-field cost and reproduces DOCI energetically. We show that unlike pCCD, pECCD also reproduces the DOCI wave function with high accuracy. Moreoever, pEC...

  5. Pairing effects in nuclear dynamic

    Science.gov (United States)

    Lacroix, Denis; Scamps, Guillaume; Tanimura, Yusuke

    2016-05-01

    In recent years, efforts have been made to account for super-fluidity in time-dependent mean-field description of nuclear dynamic [1-5]. Inclusion of pairing is important to achieve a realistic description of static properties of nuclei. Here,we show that pairing can also affect the nuclear motion. State of the art TDHF approach can describe from small to large amplitude collective motion as well as the collision between nuclei. Very recently, this microscopic approach has been improved to include pairing either in the BCS or HFB framework. Recent applications of the 3D TDHF + BCS (TDHF+BCS) model introduced in [4] will be presented. The role of super-fluidity on collective motion [6, 7], on one- and two-particle transfer [8] and on fission [9, 10] will be illustrated.

  6. Paired structures in knowledge representation

    DEFF Research Database (Denmark)

    Montero, J.; Bustince, H.; Franco de los Ríos, Camilo;

    2016-01-01

    In this position paper we propose a consistent and unifying view to all those basic knowledge representation models that are based on the existence of two somehow opposite fuzzy concepts. A number of these basic models can be found in fuzzy logic and multi-valued logic literature. Here it is...... paired structures, generated from two paired concepts together with their associated neutrality, all of them to be modeled as fuzzy sets. In this way, paired structures can be viewed as a standard basic model from which different models arise. This unifying view should therefore allow a deeper analysis...... of the relationships between several existing knowledge representation formalisms, providing a basis from which more expressive models can be later developed....

  7. Nuclear Scissors Mode with Pairing

    CERN Document Server

    Balbutsev, E B; Urban, M; Vinyes, X

    2007-01-01

    The coupled dynamics of the scissors mode and isovector giant quadrupole resonance are studied using a generalized Wigner function moments method taking into account the pair correlations. Equations of motion for angular momentum, quadrupole moment and other relevant collective variables are derived on the basis of the time dependent Hartree-Fock-Bogoliubov equations. Analytical expressions for energy centroids and transitions probabilities are found for the harmonic oscillator model with the quadrupole-quadrupole residual interaction and monopole pairing force. Deformation dependences of energies and $B(M1)$ values are correctly reproduced. The inclusion of pair correlations leads to a drastic improvement in the description of qualitative and quantitative characteristics of the scissors mode.

  8. Orbiting pairs of walking droplets

    Science.gov (United States)

    Siefert, Emmanuel; Bush, John W. M.; Oza, Anand

    2015-11-01

    Droplets may self-propel on the surface of a vibrating fluid bath, pushed forward by their own Faraday pilot-wave field. We present the results of a combined experimental and theoretical investigation of the interaction of pairs of such droplets. Particular attention is given to characterizing the system's dependence on the vibrational forcing of the bath and the impact parameter of the walking droplets. Observed criteria for the capture and stability of orbital pairs are rationalized by accompanying theoretical developments. Thanks to the NSF.

  9. Instantons in lepton pair production

    International Nuclear Information System (INIS)

    We consider QCD instanton-induced contributions to lepton pair production in hadron-hadron collisions. We relate these contributions to those known from deep inelastic scattering and demonstrate that they can be calculated reliably for sufficiently large momentum transfer. We observe that the instanton contribution to the angular distribution of the lepton pairs at finite momentum transfer strongly violates the Lam-Tung relation - a relation between coefficient functions of the angular distribution which is valid within the framework of ordinary perturbation theory. The drastic violation of this relation, as seen in experimental data, might be related to such instanton-induced effects. (Orig.)

  10. Cooperative interactions between paired domain and homeodomain.

    Science.gov (United States)

    Jun, S; Desplan, C

    1996-09-01

    The Pax proteins are a family of transcriptional regulators involved in many developmental processes in all higher eukaryotes. They are characterized by the presence of a paired domain (PD), a bipartite DNA binding domain composed of two helix-turn-helix (HTH) motifs,the PAI and RED domains. The PD is also often associated with a homeodomain (HD) which is itself able to form homo- and hetero-dimers on DNA. Many of these proteins therefore contain three HTH motifs each able to recognize DNA. However, all PDs recognize highly related DNA sequences, and most HDs also recognize almost identical sites. We show here that different Pax proteins use multiple combinations of their HTHs to recognize several types of target sites. For instance, the Drosophila Paired protein can bind, in vitro, exclusively through its PAI domain, or through a dimer of its HD, or through cooperative interaction between PAI domain and HD. However, prd function in vivo requires the synergistic action of both the PAI domain and the HD. Pax proteins with only a PD appear to require both PAI and RED domains, while a Pax-6 isoform and a new Pax protein, Lune, may rely on the RED domain and HD. We propose a model by which Pax proteins recognize different target genes in vivo through various combinations of their DNA binding domains, thus expanding their recognition repertoire. PMID:8787739

  11. Paired Reading: Psycholinguistics in Practice.

    Science.gov (United States)

    Barrett, James Martin

    1987-01-01

    Contends that children need to learn phonic skills, not necessarily through early direct teaching, but through reading experience. Suggests using Paired Reading, which is validated by psycholinguistic reading theory and provides opportunities to learn to read from context and use innate syntactic and semantic knowledge. (SKC)

  12. Direct-photon pair production

    International Nuclear Information System (INIS)

    This paper recalls some general aspects of direct-photon pair production at large Psub(T) in hadron collisions: The basic process qantiq→γγ; contributions from gg→γγ (via the quark box); possible resonant contributions; background problems due to indirect photons. A recent experiment performed at the ISR is finally described

  13. Calculation of two Belyi pairs

    OpenAIRE

    Dremov, V. A.

    2008-01-01

    We calculate two Belyi pairs using the properties of Mulase-Penkava differential. Details are provided including accurate construction of coordinates, variables and equations. The calculation is a part of the work which results in a catalogue arXiv:0710.2658

  14. Pairs of dual periodic frames

    DEFF Research Database (Denmark)

    Christensen, Ole; Goh, Say Song

    2012-01-01

    needed. The purpose of the present paper is to provide constructions of dual pairs of frames in the setting of the Hilbert space of periodic functions L2(0,2π). The frames constructed are given explicitly as trigonometric polynomials, which allows for an efficient calculation of the coefficients in the...

  15. 1993 Waterfowl Breeding Pair Survey

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — The Refuge breeding pair survey was conducted on the evening of April 29 from 5:40 pm until sunset at 7:40 pm. Weather consisted of clear skies, cool temperatures,...

  16. Pairing Linguistic and Music Intelligences

    Science.gov (United States)

    DiEdwardo, MaryAnn Pasda

    2005-01-01

    This article describes how music in the language classroom setting can be a catalyst for developing reading, writing, and understanding skills. Studies suggest that pairing music and linguistic intelligences in the college classroom improves students' grades and abilities to compose theses statements for research papers in courses that emphasize…

  17. Guanidinium Pairing Facilitates Membrane Translocation

    Czech Academy of Sciences Publication Activity Database

    Allolio, Christoph; Baxová, Katarína; Vazdar, M.; Jungwirth, Pavel

    2016-01-01

    Roč. 120, č. 1 (2016), s. 143-153. ISSN 1520-6106 R&D Projects: GA ČR GA13-06181S Institutional support: RVO:61388963 Keywords : ab initio molecular dynamics * guanidinium * like charge pairing * membrane Subject RIV: CF - Physical ; Theoretical Chemistry Impact factor: 3.302, year: 2014

  18. Pairing interaction and Galilei invariance

    International Nuclear Information System (INIS)

    The relation between Galilei invariance and the energy weighted sum rule for a mass dipole operator is discussed using a monopole pairing interaction. It is found that the energy weighted sum rule for the mass dipole operator changes as much as 18% in medium and heavy nuclei. copyright 1997 The American Physical Society

  19. A multievent approach to estimating pair fidelity and heterogeneity in state transitions

    OpenAIRE

    Culina, Antica; Lachish, Shelly; Pradel, Roger; Choquet, Remi; Sheldon, Ben C.

    2013-01-01

    Fidelity rates of pair-bonded individuals are of considerable interest to behavioral and population biologists as they can influence population structure, mating rates, population productivity, and gene flow. Estimates of fidelity rates calculated from direct observations of pairs in consecutive breeding seasons may be biased because (i) individuals that are not seen are assumed to be dead, (ii) variation in the detectability of individuals is ignored, and (iii) pair status must be known with...

  20. Discovering Implicit Entity Relation with the Gene-Citation-Gene Network

    OpenAIRE

    Min Song; Nam-Gi Han; Yong-Hwan Kim; Ying Ding; Tamy Chambers

    2013-01-01

    In this paper, we apply the entitymetrics model to our constructed Gene-Citation-Gene (GCG) network. Based on the premise there is a hidden, but plausible, relationship between an entity in one article and an entity in its citing article, we constructed a GCG network of gene pairs implicitly connected through citation. We compare the performance of this GCG network to a gene-gene (GG) network constructed over the same corpus but which uses gene pairs explicitly connected through traditional c...

  1. Examination of pairs in neutrino mixing matrix

    CERN Document Server

    Liu, Dianjing

    2015-01-01

    We exam the pairs of neutrino mixing matrix and suggest pairs that can be used in the construction of new mixing patterns, with "pair" denoting the equality of the modulus of a pair of matrix elements. The results show that the tri-maximal mixing in $\

  2. Germline progenitors escape the widespread phenomenon of homolog pairing during Drosophila development.

    Directory of Open Access Journals (Sweden)

    Eric F Joyce

    Full Text Available Homolog pairing, which plays a critical role in meiosis, poses a potential risk if it occurs in inappropriate tissues or between nonallelic sites, as it can lead to changes in gene expression, chromosome entanglements, and loss-of-heterozygosity due to mitotic recombination. This is particularly true in Drosophila, which supports organismal-wide pairing throughout development. Discovered over a century ago, such extensive pairing has led to the perception that germline pairing in the adult gonad is an extension of the pairing established during embryogenesis and, therefore, differs from the mechanism utilized in most species to initiate pairing specifically in the germline. Here, we show that, contrary to long-standing assumptions, Drosophila meiotic pairing in the gonad is not an extension of pairing established during embryogenesis. Instead, we find that homologous chromosomes are unpaired in primordial germ cells from the moment the germline can be distinguished from the soma in the embryo and remain unpaired even in the germline stem cells of the adult gonad. We further establish that pairing originates immediately after the stem cell stage. This pairing occurs well before the initiation of meiosis and, strikingly, continues through the several mitotic divisions preceding meiosis. These discoveries indicate that the spatial organization of the Drosophila genome differs between the germline and the soma from the earliest moments of development and thus argue that homolog pairing in the germline is an active process as versus a passive continuation of pairing established during embryogenesis.

  3. How to motivate developers to pair program?

    OpenAIRE

    Haara, Johanna

    2016-01-01

    Many developers are needed to develop large software. Successful development demands communication and teamwork and pair programming improves them. One practice of Extreme Programming is pair programming, which means that developers work together a task. This case study studied how to motivate developers to pair program. The benefits, cost and ways to pair program were studied. In addition, affect of general motivation and Belbin’s team roles to pair programming were studied. The study w...

  4. Gene therapy in periodontics

    OpenAIRE

    Anirban Chatterjee; Nidhi Singh; Mini Saluja

    2013-01-01

    GENES are made of DNA - the code of life. They are made up of two types of base pair from different number of hydrogen bonds AT, GC which can be turned into instruction. Everyone inherits genes from their parents and passes them on in turn to their children. Every person′s genes are different, and the changes in sequence determine the inherited differences between each of us. Some changes, usually in a single gene, may cause serious diseases. Gene therapy is ′the use of genes as medicine′. It...

  5. Pairing theory of striped superconductivity

    International Nuclear Information System (INIS)

    Striped high-Tc superconductors such as La7/8Ba1/8CuO4 show a fascinating competition between spin and charge order on the one hand and superconductivity on the other. A theory for these systems therefore has to capture both the spin correlations in an antiferromagnet and the pair-correlation of a superconductor. For this purpose we have developed an effective Hartree-Fock theory by merging electron pairing with finite center-of-mass momentum and antiferromagnetism. We show that this theory reproduces the key experimental features such as the formation of the antiferromagnetic stripe patterns at 7/8 band filling or the quasi one-dimensional electronic structure observed by photoemission spectroscopy.

  6. Klt singularities of horospherical pairs

    OpenAIRE

    Pasquier, Boris

    2015-01-01

    Let $X$ be a horospherical $G$-variety and let $D$ be an effective $\\mathbb{Q}$-divisor of $X$ that is stable under the action of a Borel subgroup $B$ of $G$ and such that $D+K\\_X$ is $\\mathbb{Q}$-Cartier. We prove, using Bott-Samelson resolutions, that the pair $(X,D)$ is klt if and only if $\\lfloor D\\rfloor=0$

  7. Differential Bloch Oscillating Transistor Pair

    OpenAIRE

    Sarkar, Jayanta; Puska, Antti; Hassel, Juha; Hakonen, Pertti J.

    2013-01-01

    We examine a Bloch Oscillating Transistor pair as a differential stage for cryogenic low-noise measurements. Using two oppositely biased, nearly symmetric Bloch Oscillating Transistors, we measured the sum and difference signals in the current gain and transconductance modes while changing the common mode signal, either voltage or current. From the common mode rejection ratio we find values $\\sim 20$ dB even under non-optimal conditions. We also characterize the noise properties and obtain ex...

  8. One-dimensional Cooper pairing

    International Nuclear Information System (INIS)

    Exact solutions for electron pairing in a 1D Fermi gas under different separable interactions. Energy dispersion relations for arbitrary values of center-of-mass momenta and interaction strengths. Results reveal linear and roton-like modes. Effects due to finite range parameters in the interaction. We study electron pairing in a one-dimensional (1D) fermion gas at zero temperature under zero- and finite-range, attractive, two-body interactions. The binding energy of Cooper pairs (CPs) with zero total or center-of-mass momentum (CMM) increases with attraction strength and decreases with interaction range for fixed strength. The excitation energy of 1D CPs with nonzero CMM display novel, unique properties. It satisfies a dispersion relation with two branches: a phonon-like linear excitation for small CP CMM; this is followed by roton-like quadratic excitation minimum for CMM greater than twice the Fermi wavenumber, but only above a minimum threshold attraction strength. The expected quadratic-in-CMM dispersion in vacuo when the Fermi wavenumber is set to zero is recovered for any coupling. This paper completes a three-part exploration initiated in 2D and continued in 3D.

  9. Compton Scattering, Pair Annihilation and Pair Production in a Plasma

    OpenAIRE

    Krishan, Vinod

    1999-01-01

    The square of the four momentum of a photon in vacuum is zero. However, in an unmagnetized plasma it is equal to the square of the plasma frequency. Further, the electron-photon coupling vertex is modified in a plasma to include the effect of the plasma medium. I calculate the cross sections of the three processes - the Compton scattering, electron-positron pair annihilation and production in a plasma. At high plasma densities, the cross sections are found to change significantly. Such high p...

  10. Report of cluster headache in a pair of monozygous twins

    OpenAIRE

    Pedro A. Kowacs; Elcio J. Piovesan; Lineu C. Werneck; Fameli, Hudson; Marcos C. Lange; Raskin, Salmo

    2004-01-01

    A pair of identical twins with cluster headache is described. Monozygosity was confirmed by the identification of 14 DNA markers. In spite of harboring the same genes, the clinical picture presented by the twins was not exactly the same. Cluster headache is probably the best known trigeminal-autonomic cephalalgia, but several questions regarding its pathophysiology remain to be answered. The cases described herein reinforce the role of genetic aspects in its etiology.

  11. LOD wars: The affected-sib-pair paradigm strikes back!

    Energy Technology Data Exchange (ETDEWEB)

    Farrall, M. [Wellcome Trust Centre for Human Genetics, Oxford (United Kingdom)

    1997-03-01

    In a recent letter, Greenberg et al. aired their concerns that the affected-sib-pair (ASP) approach was becoming excessively popular, owing to misconceptions and ignorance of the properties and limitations of both the ASP and the classic LOD-score approaches. As an enthusiast of using the ASP approach to map susceptibility genes for multifactorial traits, I would like to contribute a few comments and explanatory notes in defense of the ASP paradigm. 18 refs.

  12. Neutron-Proton pairing revisited

    OpenAIRE

    Friedman, W. A.; Bertsch, G. F.

    2007-01-01

    We reexamine neutron-proton pairing as a phenomenon that should be explanable in a microscopic theory of nuclear binding energies. Empirically, there is an increased separation energy when both neutron and proton numbers are even or if they are both odd. The enhancement is present at some level in nearly all nuclei: the separation energy difference has the opposite sign in less than 1% of the cases in which sufficient data exist. We discuss the possible origin of the effect in the context of ...

  13. Working pairs for resorption refrigerator

    International Nuclear Information System (INIS)

    The performances of three chemisorption working pairs operating under the resorption cycle were studied gravimetrically by comparing the desorbed and adsorbed mass of refrigerant in different operation conditions. All pairs used NH3 as refrigerant and MnCl2 in the main reactor, but each one used a different salt for the cooling effect production in the secondary reactor. These salts were NH4Cl or NaBr or BaCl2. The experimental results indicated that the degree of conversion in reaction between the NH3 and BaCl2 was inferior to 25% during cooling production at 0 oC or below, whereas the reactions with the other salts had conversions of at least 80%. When the systems operated with heat source temperature for the main reactor at 155 oC, heat sink temperature for both reactors at 30 oC, and cooling effect production temperature at 0 oC the coefficient of performance (COP) of the system using NH4Cl and the system using NaBr were similar and around 0.30; however, the former system had a specific cooling power (SCP) 5% higher than that of the latter system. Because the reaction in the system with NH4Cl was practically halted in a period much shorter than that used in the experiments, it is possible to expect that if the period of the cooling period was shortened, the difference between the SCP of those systems would be much higher. - Highlights: → The comparison of three different working pairs operating under resorption cycle was conducted. → The three working pairs were NH4Cl/MnCl2, NaBr/MnCl2, BaCl2/MnCl2, respectively. → The mass of refrigerant reacted in different situations were measured and compared. → Among the LTS studied, NH4Cl is the most suitable to be used in a resorption machine at 0 or below 0 oC.

  14. Analysis of gene order conservation in eukaryotes identifies transcriptionally and functionally linked genes.

    Directory of Open Access Journals (Sweden)

    Marcela Dávila López

    Full Text Available The order of genes in eukaryotes is not entirely random. Studies of gene order conservation are important to understand genome evolution and to reveal mechanisms why certain neighboring genes are more difficult to separate during evolution. Here, genome-wide gene order information was compiled for 64 species, representing a wide variety of eukaryotic phyla. This information is presented in a browser where gene order may be displayed and compared between species. Factors related to non-random gene order in eukaryotes were examined by considering pairs of neighboring genes. The evolutionary conservation of gene pairs was studied with respect to relative transcriptional direction, intergenic distance and functional relationship as inferred by gene ontology. The results show that among gene pairs that are conserved the divergently and co-directionally transcribed genes are much more common than those that are convergently transcribed. Furthermore, highly conserved pairs, in particular those of fungi, are characterized by a short intergenic distance. Finally, gene pairs of metazoa and fungi that are evolutionary conserved and that are divergently transcribed are much more likely to be related by function as compared to poorly conserved gene pairs. One example is the ribosomal protein gene pair L13/S16, which is unusual as it occurs both in fungi and alveolates. A specific functional relationship between these two proteins is also suggested by the fact that they are part of the same operon in both eubacteria and archaea. In conclusion, factors associated with non-random gene order in eukaryotes include relative gene orientation, intergenic distance and functional relationships. It seems likely that certain pairs of genes are conserved because the genes involved have a transcriptional and/or functional relationship. The results also indicate that studies of gene order conservation aid in identifying genes that are related in terms of transcriptional

  15. Nowitna NWR breeding pair survey, 1988

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — This report summarizes the results of a waterfowl breeding pair survey taken on Nowitna National Wildlife Refuge in 1988. The breeding pair survey was conducted 31...

  16. Stability theorems for symplectic and contact pairs

    OpenAIRE

    Bande, G.; Ghiggini, P.; Kotschick, D.

    2004-01-01

    We prove Gray--Moser stability theorems for complementary pairs of forms of constant class defining symplectic pairs, contact-symplectic pairs and contact pairs. We also consider the case of contact-symplectic and contact-contact structures, in which the constant class condition on a one-form is replaced by the condition that its kernel hyperplane distribution have constant class in the sense of E. Cartan.

  17. Pair bonds: arrival synchrony in migratory birds.

    Science.gov (United States)

    Gunnarsson, T G; Gill, J A; Sigurbjörnsson, T; Sutherland, W J

    2004-10-01

    Synchronous arrival of pairs of migratory birds at their breeding grounds is important for maintaining pair bonds and is achieved by pairs that remain together all year round. Here we show that arrival is also synchronized in paired individuals of a migratory shorebird, the black-tailed godwit (Limosa limosa islandica), even though they winter hundreds of kilometres apart and do not migrate together. The mechanisms required to achieve this synchrony and prevent 'divorce' illustrate the complexity of migratory systems. PMID:15470417

  18. Properties of isocalar-pair condensates

    CERN Document Server

    Van Isacker, P; Fallon, P; Zerguine, S

    2016-01-01

    It is pointed out that the ground state of n neutrons and n protons in a single-j shell, interacting through an isoscalar (T=0) pairing force, is not paired, J=0, but rather spin-aligned, J=n. This observation is explained in the context of a model of isoscalar P (J=1) pairs, which is mapped onto a system of p bosons, leading to an approximate analytic solution of the isoscalar-pairing limit in jj coupling.

  19. Drift wave in pair-ion plasma

    Indian Academy of Sciences (India)

    Samiran Ghosh; Nikhil Chakrabarti; Manoranjan Khan; M R Gupta

    2013-02-01

    The conditions for the existence of low-frequency electrostatic drift wave in pair-ion plasma are discussed. It is shown that the temperature and/or mass difference of both species could produce drift wave in a pair-ion plasma. The results are discussed in the context of the fullerene pair-ion plasma experiment.

  20. On one-sided torsion pair

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    Motivated by the concept of a torsion pair in a pre-triangulated category induced by Beligiannis and Reiten, the notion of a left (right) torsion pair in the left (right) triangulated category is introduced and investigated. We provide new connections between different aspects of torsion pairs in one-sided triangulated categories, pre-triangulated categories, stable categories and derived categories.

  1. Angular momentum decomposition of Richardson's pairs

    International Nuclear Information System (INIS)

    The angular momentum decomposition of pairs obtained using Richardson's exact solution of the pairing Hamiltonian for the deformed 174Yb nucleus are displayed. The probabilities for low angular momenta of the collective pairs are strikingly different from the ones obtained in the BCS ground state

  2. Genome filtering using methylation-sensitive restriction enzymes with six-base pair recognition sites

    Science.gov (United States)

    The large fraction of repetitive DNA in many plant genomes has complicated all aspects of DNA sequencing and assembly, and thus techniques that enrich for genes and low-copy sequences have been employed to isolate gene space. Methyl sensitive restriction enzymes with six base pair recognition sites...

  3. Direct-photon pair production

    International Nuclear Information System (INIS)

    Direct-photon pair production in high-energy hadron collisions is considered. After discussing general aspects of such reactions and giving a brief historical survey of that subject, we present some calculations on the contributions from q anti-q and g g collisions (the latter via the quark box) to the γγ continuum, and on possible resonant contributions. Finally, an estimation of the indirect-photon background (mainly due to π0 and eta decay, and to quark bremsstrahlung) is given for colliding-beam conditions at high energy; assuming both photons to be measured at 900 with equal and opposite momenta, and (within experimental limits) unaccompanied by any hadrons or additional photons, it is shown that this background can be sharply reduced

  4. Perturbations of vortex ring pairs

    CERN Document Server

    Gubser, Steven S; Parikh, Sarthak

    2015-01-01

    We study pairs of co-axial vortex rings starting from the action for a classical bosonic string in a three-form background. We complete earlier work on the phase diagram of classical orbits by explicitly considering the case where the circulations of the two vortex rings are equal and opposite. We then go on to study perturbations, focusing on cases where the relevant four-dimensional transfer matrix splits into two-dimensional blocks. When the circulations of the rings have the same sign, instabilities are mostly limited to wavelengths smaller than a dynamically generated length scale at which single-ring instabilities occur. When the circulations have the opposite sign, larger wavelength instabilities can occur.

  5. Perturbations of vortex ring pairs

    Science.gov (United States)

    Gubser, Steven S.; Horn, Bart; Parikh, Sarthak

    2016-02-01

    We study pairs of coaxial vortex rings starting from the action for a classical bosonic string in a three-form background. We complete earlier work on the phase diagram of classical orbits by explicitly considering the case where the circulations of the two vortex rings are equal and opposite. We then go on to study perturbations, focusing on cases where the relevant four-dimensional transfer matrix splits into two-dimensional blocks. When the circulations of the rings have the same sign, instabilities are mostly limited to wavelengths smaller than a dynamically generated length scale at which single-ring instabilities occur. When the circulations have the opposite sign, larger wavelength instabilities can occur.

  6. QUANTUM CRYPTOGRAPHY WITH PHOTON PAIRS

    Directory of Open Access Journals (Sweden)

    Anand Sharma,

    2010-07-01

    Full Text Available Quantum cryptographic systems use quantum mechanical concepts that are based on qubit superposition of states, and on the no cloning or no copying theorem to establish unbreakable cipher keys. The basic idea of quantum cryptography is to send the key in the form of photons over a public channel, encoding the zeros and one on quantum states in such a way that any eavesdropping attempt can be detected. Using optical communications the most commonly quantum mechanical property used is the polarization state of photon. However, in most quantum cryptographic algorithms a random polarization state is required. The photons are ideal for low loss transport, either in free space or in optical fibers, i.e. we have the full arsenal of fiber optic technology at our disposal. In this paper we are describing the process of quantum cryptography with photon pairs.

  7. Factors affecting home range of mallard pairs

    Energy Technology Data Exchange (ETDEWEB)

    Riechmann, J.H.

    1976-06-01

    Certain habitat and social factors were investigated for their effect on home range size of mallard (Anas platyhynchos) pairs breeding in a forested region of north-central Minnesota during the spring of 1971--72. Data from 31 radio-marked hens and drakes were used, but primary emphasis was placed on 8 pairs (5 with both members of the pair marked). Pairs were radio-tracked on river marsh areas, river channels, and large sand lakes to provide comparative data for evaluating home range size differences. Home ranges varied from an average of 53 ha for pairs using primarily river habitat to 871 ha for pairs using only large sand lakes. River and lake shorelines varied considerably in species and density of vegetation. Interaction between pairs as well as density of flocked males appeared to be influenced by these habitat differences with resultant effects on home range sizes.

  8. On Minus Paired-Domination in Graphs

    Institute of Scientific and Technical Information of China (English)

    邢化明; 孙良

    2003-01-01

    The study of minus paired-domination of a graph G=(V,E) is initiated. Let SV be any paired-dominating set of G, a minus paired-dominating function is a function of the form f∶V→{-1,0,1} such that f(v)=1 for v∈S, f(v)≤0 for v∈V-S, and f(N[v])≥1 for all v∈V. The weight of a minus paired-dominating function f is w(f)=∑f(v), over all vertices v∈V. The minus paired-domination number of a graph G is γ-p(G)=min{w(f)|f is a minus paired-dominating function of G}. On the basis of the minus paired-domination number of a graph G defined, some of its properties are discussed.

  9. Modelling prokaryote gene content

    Directory of Open Access Journals (Sweden)

    Edward Susko

    2006-01-01

    Full Text Available The patchy distribution of genes across the prokaryotes may be caused by multiple gene losses or lateral transfer. Probabilistic models of gene gain and loss are needed to distinguish between these possibilities. Existing models allow only single genes to be gained and lost, despite the empirical evidence for multi-gene events. We compare birth-death models (currently the only widely-used models, in which only one gene can be gained or lost at a time to blocks models (allowing gain and loss of multiple genes within a family. We analyze two pairs of genomes: two E. coli strains, and the distantly-related Archaeoglobus fulgidus (archaea and Bacillus subtilis (gram positive bacteria. Blocks models describe the data much better than birth-death models. Our models suggest that lateral transfers of multiple genes from the same family are rare (although transfers of single genes are probably common. For both pairs, the estimated median time that a gene will remain in the genome is not much greater than the time separating the common ancestors of the archaea and bacteria. Deep phylogenetic reconstruction from sequence data will therefore depend on choosing genes likely to remain in the genome for a long time. Phylogenies based on the blocks model are more biologically plausible than phylogenies based on the birth-death model.

  10. PANDAseq: paired-end assembler for illumina sequences

    Directory of Open Access Journals (Sweden)

    Masella Andre P

    2012-02-01

    Full Text Available Abstract Background Illumina paired-end reads are used to analyse microbial communities by targeting amplicons of the 16S rRNA gene. Publicly available tools are needed to assemble overlapping paired-end reads while correcting mismatches and uncalled bases; many errors could be corrected to obtain higher sequence yields using quality information. Results PANDAseq assembles paired-end reads rapidly and with the correction of most errors. Uncertain error corrections come from reads with many low-quality bases identified by upstream processing. Benchmarks were done using real error masks on simulated data, a pure source template, and a pooled template of genomic DNA from known organisms. PANDAseq assembled reads more rapidly and with reduced error incorporation compared to alternative methods. Conclusions PANDAseq rapidly assembles sequences and scales to billions of paired-end reads. Assembly of control libraries showed a 4-50% increase in the number of assembled sequences over naïve assembly with negligible loss of "good" sequence.

  11. Report on Pairing-based Cryptography.

    Science.gov (United States)

    Moody, Dustin; Peralta, Rene; Perlner, Ray; Regenscheid, Andrew; Roginsky, Allen; Chen, Lily

    2015-01-01

    This report summarizes study results on pairing-based cryptography. The main purpose of the study is to form NIST's position on standardizing and recommending pairing-based cryptography schemes currently published in research literature and standardized in other standard bodies. The report reviews the mathematical background of pairings. This includes topics such as pairing-friendly elliptic curves and how to compute various pairings. It includes a brief introduction to existing identity-based encryption (IBE) schemes and other cryptographic schemes using pairing technology. The report provides a complete study of the current status of standard activities on pairing-based cryptographic schemes. It explores different application scenarios for pairing-based cryptography schemes. As an important aspect of adopting pairing-based schemes, the report also considers the challenges inherent in validation testing of cryptographic algorithms and modules. Based on the study, the report suggests an approach for including pairing-based cryptography schemes in the NIST cryptographic toolkit. The report also outlines several questions that will require further study if this approach is followed. PMID:26958435

  12. Pulsational-Pair Instability Supernovae

    CERN Document Server

    Woosley, S E

    2016-01-01

    The final evolution of stars in the mass range 60 - 150 solar masses is explored. Depending upon their mass loss and rotation rates, many of these stars will end their lives as pulsational pair-instability supernovae. Even a non-rotating 70 solar mass star is pulsationally unstable during oxygen shell burning and can power a sub-luminous supernova. Rotation decreases the limit further. For more massive stars, the pulsations are less frequent, span a longer time, and are more powerful. Violent pulsations eject not only any residual low density envelope, but also that fraction of the helium core mass outside about 35 - 50 solar masses. The remaining core of helium and heavy elements continues to evolve, ultimately forming an iron core of about 2.5 solar masses that probably collapses to a black hole. A variety of observational transients result with total durations ranging from days to 10,000 years, and luminosities from 10$^{41}$ to 10$^{44}$ erg s$^{-1}$. Many transients resemble ordinary Type IIp supernovae,...

  13. Divergence of Gene Body DNA Methylation and Evolution of Plant Duplicate Genes

    OpenAIRE

    Wang, Jun; Marowsky, Nicholas C.; Fan, Chuanzhu

    2014-01-01

    It has been shown that gene body DNA methylation is associated with gene expression. However, whether and how deviation of gene body DNA methylation between duplicate genes can influence their divergence remains largely unexplored. Here, we aim to elucidate the potential role of gene body DNA methylation in the fate of duplicate genes. We identified paralogous gene pairs from Arabidopsis and rice (Oryza sativa ssp. japonica) genomes and reprocessed their single-base resolution methylome data....

  14. Genes and Gene Therapy

    Science.gov (United States)

    ... correctly, a child can have a genetic disorder. Gene therapy is an experimental technique that uses genes to ... or prevent disease. The most common form of gene therapy involves inserting a normal gene to replace an ...

  15. Pairing and specific heat in hot nuclei

    OpenAIRE

    Gambacurta, Danilo; Lacroix, Denis; Sandulescu, Nicu

    2013-01-01

    The thermodynamics of pairing phase-transition in nuclei is studied in the canonical ensemble and treating the pairing correlations in a finite-temperature variation after projection BCS approach (FT-VAP). Due to the restoration of particle number conservation, the pairing gap and the specific heat calculated in the FT-VAP approach vary smoothly with the temperature, indicating a gradual transition from the superfluid to the normal phase, as expected in finite systems. We have checked that th...

  16. Pair Creation of Black Holes During Inflation

    OpenAIRE

    Bousso, Raphael; Hawking, Stephen W.

    1996-01-01

    Black holes came into existence together with the universe through the quantum process of pair creation in the inflationary era. We present the instantons responsible for this process and calculate the pair creation rate from the no boundary proposal for the wave function of the universe. We find that this proposal leads to physically sensible results, which fit in with other descriptions of pair creation, while the tunnelling proposal makes unphysical predictions. We then describe how the pa...

  17. Dispersion Compensation using a Prism-pair

    OpenAIRE

    Shaked, Yaakov; Yefet, Shai; Pe'er, Avi

    2014-01-01

    A simple and intuitive formulation is reviewed for the Brewster prism-pair - A most common component in spectroscopy-oriented experiments using ultrashort pulses. This review aims to provide students and beginners in the field of spectroscopy with a unified description of a major experimental component. The total spectral phase experienced by a broadband light field is calculated after passing through a pair of Brewster-cut prisms, demonstrating the flexibility of the prism pair to provide tu...

  18. Top pair production distributions at the Tevatron

    Directory of Open Access Journals (Sweden)

    Takeuchi Yuji

    2013-05-01

    Full Text Available At the Tevatron, the top quark is mainly produced in pairs through the strong interaction and decays before forming hadrons. Thus the kinematical distributions at top pair production possess rich information on the tt¯$tar t$ production vertex including polarizations of top and anti-top quarks. In this article, recent measurements on top quark pair production distributions at Tevatron (CDF and DO are presented.

  19. A New Secure Pairing Protocol using Biometrics

    OpenAIRE

    Buhan, I.R.

    2008-01-01

    Secure Pairing enables two devices, which share no prior context with each other, to agree upon a security association that they can use to protect their subsequent communication. Secure pairing offers guarantees of the association partner identity and it should be resistant to eavesdropping or to a man-in-the-middle attack. We propose a user friendly solution to this problem. Keys extracted from biometric data of the participants are used for authentication. Details of the pairing protocol a...

  20. Density dependence of the pairing interaction and pairing correlation in unstable nuclei

    CERN Document Server

    Changizi, S A

    2015-01-01

    This work aims at a global assessment of the effect of the density dependence of the zero-range pairing interaction. Systematic Skyrme-Hartree-Fock-Bogoliubov calculations with the volume, surface and mixed pairing forces are carried out to study the pairing gaps in even-even nuclei over the whole nuclear chart. Calculations are also done in coordinate representation for unstable semi-magic even-even nuclei. The calculated pairing gaps are compared with empirical values from four different odd-even staggering formulae. Calculations with the three pairing interactions are comparable for most nuclei close to $\\beta$-stability line. However, the surface interaction calculations predict neutron pairing gaps in neutron-rich nuclei that are significantly stronger than those given by the mixed and volume pairing. On the other hand, calculations with volume and mixed pairing forces show noticeable reduction of neutron pairing gaps in nuclei far from the stability.

  1. A pair of solar spike emissions

    Institute of Scientific and Technical Information of China (English)

    LIU; Yuying(刘玉英); FU; Qijun(傅其骏); QIN; Zhihai(秦志海); HUANG; Guangli(黄光力); WANG; Ming(汪敏)

    2002-01-01

    Using the 2.6-3.8 GHz solar radio spectrometer of the National Astronomical Observatories of China (NAOC), a pair of microwave millisecond spike (MMS) emissions were observed, and their frequency drift rate was measured. The separatrix frequency of the MMS pair was at 2900 MHz. Its emission layer was about 2×104km above the photosphere. The polarization degree was wave-like variation with an average value of about 25% in LCP. An MMS pair differs greatly from the type III bursts pair. For the latter, in a certain frequency range, there is no emission around separatrix frequency. This phenomenon may help better understand the mechanism of MMS.

  2. Lax pairs for deformed Minkowski spacetimes

    CERN Document Server

    Kyono, Hideki; Yoshida, Kentaroh

    2015-01-01

    We proceed to study Yang-Baxter deformations of 4D Minkowski spacetime based on a conformal embedding. We first revisit a Melvin background and argue a Lax pair by adopting a simple replacement law invented in 1509.00173. This argument enables us to deduce a general expression of Lax pair. Then the anticipated Lax pair is shown to work for arbitrary classical $r$-matrices with Poinca\\'e generators. As other examples, we present Lax pairs for pp-wave backgrounds, the Hashimoto-Sethi background, the Spradlin-Takayanagi-Volovich background.

  3. Lax pairs for deformed Minkowski spacetimes

    Science.gov (United States)

    Kyono, Hideki; Sakamoto, Jun-ichi; Yoshida, Kentaroh

    2016-01-01

    We proceed to study Yang-Baxter deformations of 4D Minkowski spacetime based on a conformal embedding. We first revisit a Melvin background and argue a Lax pair by adopting a simple replacement law invented in 1509.00173. This argument enables us to deduce a general expression of Lax pair. Then the anticipated Lax pair is shown to work for arbitrary classical r-matrices with Poincaré generators. As other examples, we present Lax pairs for pp-wave backgrounds, the Hashimoto-Sethi background, the Spradlin-Takayanagi-Volovich background.

  4. Transrelativistic pair plasmas in AGN jets

    DEFF Research Database (Denmark)

    Bottcher, M.; Pohl, M.; Schlickeiser, R.

    1999-01-01

    Models of relativistic jets filled with ultrarelativistic pair plasma are very successful in explaining the broadband radiation of gamma-ray blazars. Assuming that the initial injection and cooling of ultrarelativistic pair plasma in an AGN jet has occurred, producing the observed high-energy gamma......-ray radiation, we investigate the further evolution of the pair plasma as it continues to move out from the central engine. The effects of thermalization and reacceleration, the emission of pair bremsstrahlung and annihilation radiation and the bulk Compton process, and the possible application to MeV blazars...

  5. Discovering implicit entity relation with the gene-citation-gene network.

    Science.gov (United States)

    Song, Min; Han, Nam-Gi; Kim, Yong-Hwan; Ding, Ying; Chambers, Tamy

    2013-01-01

    In this paper, we apply the entitymetrics model to our constructed Gene-Citation-Gene (GCG) network. Based on the premise there is a hidden, but plausible, relationship between an entity in one article and an entity in its citing article, we constructed a GCG network of gene pairs implicitly connected through citation. We compare the performance of this GCG network to a gene-gene (GG) network constructed over the same corpus but which uses gene pairs explicitly connected through traditional co-occurrence. Using 331,411 MEDLINE abstracts collected from 18,323 seed articles and their references, we identify 25 gene pairs. A comparison of these pairs with interactions found in BioGRID reveal that 96% of the gene pairs in the GCG network have known interactions. We measure network performance using degree, weighted degree, closeness, betweenness centrality and PageRank. Combining all measures, we find the GCG network has more gene pairs, but a lower matching rate than the GG network. However, combining top ranked genes in both networks produces a matching rate of 35.53%. By visualizing both the GG and GCG networks, we find that cancer is the most dominant disease associated with the genes in both networks. Overall, the study indicates that the GCG network can be useful for detecting gene interaction in an implicit manner. PMID:24358368

  6. Discovering implicit entity relation with the gene-citation-gene network.

    Directory of Open Access Journals (Sweden)

    Min Song

    Full Text Available In this paper, we apply the entitymetrics model to our constructed Gene-Citation-Gene (GCG network. Based on the premise there is a hidden, but plausible, relationship between an entity in one article and an entity in its citing article, we constructed a GCG network of gene pairs implicitly connected through citation. We compare the performance of this GCG network to a gene-gene (GG network constructed over the same corpus but which uses gene pairs explicitly connected through traditional co-occurrence. Using 331,411 MEDLINE abstracts collected from 18,323 seed articles and their references, we identify 25 gene pairs. A comparison of these pairs with interactions found in BioGRID reveal that 96% of the gene pairs in the GCG network have known interactions. We measure network performance using degree, weighted degree, closeness, betweenness centrality and PageRank. Combining all measures, we find the GCG network has more gene pairs, but a lower matching rate than the GG network. However, combining top ranked genes in both networks produces a matching rate of 35.53%. By visualizing both the GG and GCG networks, we find that cancer is the most dominant disease associated with the genes in both networks. Overall, the study indicates that the GCG network can be useful for detecting gene interaction in an implicit manner.

  7. Pair plasma in pulsar magnetospheres

    International Nuclear Information System (INIS)

    The main features of radiation received from pulsars imply that they are neutron stars which contain an extremely intense magnetic field and emit coherently in the radio domain. Most recent studies attribute the origin of the coherence to plasma instabilities arising in pulsar magnetospheres; they mainly concern the linear, or the nonlinear, character of the involved unstable waves. We briefly introduce radio pulsars and specify physical conditions in pulsar emission regions: geometrical properties, magnetic field, pair creation processes and repartition of relativistic charged particles. We point to the main ingredients of the linear theory, extensively explored since the 1970s: (i) a dispersion relation specific to the pulsar case; (ii) the characteristics of the waves able to propagate in relativistic pulsar plasmas; (iii) the different ways in which a two-humped distribution of particles may arise in a pulsar magnetosphere and favour the development of a two-stream instability. We sum up recent improvements of the linear theory: (i) the determination of a 'coupling function' responsible for high values of the wave field components and electromagnetic energy available; (ii) the obtention of new dispersion relations for actually anisotropic pulsar plasmas with relativistic motions and temperatures; (iii) the interaction between a plasma and a beam, both with relativistic motions and temperatures; (iv) the interpretation of observed 'coral' and 'conal' features, associated with the presence of boundaries and curved magnetic field lines in the emission region; (v) the detailed topology of the magnetic field in the different parts of the emission region and its relation to models recently proposed to interpret drifting subpulses observed from PSR 0943+10, showing 20 sub-beams of emission. We relate the nonlinear evolution of the two-stream instability and development of strong turbulence in relativistic pulsar plasmas to the emergence of relativistic solitons, able

  8. A Review of Pair-wise Testing

    OpenAIRE

    Sanchez, Jimi

    2016-01-01

    In software testing, the large size of the input domain makes exhaustively testing the inputs a daunting and often impossible task. Pair-wise testing is a popular approach to combinatorial testing problems. This paper reviews Pair-wise testing and its history, strengths, weaknesses, and tools for generating test cases.

  9. Pair Programming in Education: A Literature Review

    Science.gov (United States)

    Hanks, Brian; Fitzgerald, Sue; McCauley, Renee; Murphy, Laurie; Zander, Carol

    2011-01-01

    This article provides a review of educational research literature focused on pair programming in the undergraduate computer science curriculum. Research suggests that the benefits of pair programming include increased success rates in introductory courses, increased retention in the major, higher quality software, higher student confidence in…

  10. Bonnet Pairs of Surfaces in Minkowski Space

    OpenAIRE

    Grantcharov, G.; Salom, R.

    2012-01-01

    We review some results about Bonnet pairs in Minkowski space obtained using split quaternions and split complex numbers. We present also an example of Bonnet pairs of minimal immersed timelike tori with umbilical points. Such examples do not exists in the Euclidean space.

  11. Superfluid characteristics of induced-pairing model

    International Nuclear Information System (INIS)

    We study electromagnetic and thermodynamic properties of a model coexisting local electron pairs and itinerant carriers coupled via the intersubsystem charge exchange. The calculations of the London penetration depth, energy gap, the magnetic critical fields and the coherence length in the superconducting phase are performed. The effects of reducing binding energy of local pairs are discussed. (author)

  12. A Separable Pairing Force in Nuclear Matter

    Institute of Scientific and Technical Information of China (English)

    TIAN Yuan; MA Zhong-Yu

    2006-01-01

    The method introduced by Duguet is adopted to derive a separable form of the pairing interaction in the 1 S0channel from a bare or an effective nucleon-nucleon (NN) interaction in nuclear matter. With this approach the separable pairing interaction reproduces the pairing properties provided by its corresponding NN interaction. In this work, separable forms of pairing interactions in the 1 S0 channel for the bare NN interaction, Bonn potential and the Gogny effective interaction are obtained. It is found that the separable force of the Gogny effective interaction in the 1 S0 channel has a clear link with the bare NN interaction. With such a simple separable form pairing properties provided by the Gogny force in nuclear matter can be reproduced.

  13. SRTM Stereo Pair: Fiji Islands

    Science.gov (United States)

    2000-01-01

    image pair and viewing them with a stereoscope. When stereoscopically merged, the result is a vertically exaggerated view of the Earth's surface in its full three dimensions.This image was acquired by SRTM aboard the Space Shuttle Endeavour, launched on February 11, 2000. SRTM used the same radar instrument that comprised the Spaceborne Imaging Radar-C/X-Band Synthetic Aperture Radar (SIR-C/X-SAR) that flew twice on the Space Shuttle Endeavour in 1994. SRTM was designed to collect three-dimensional measurements of the Earth's surface. To collect the 3-D data, engineers added a 60-meter-long (about 200 feet) mast, installed additional C-band and X-band antennas, and improved tracking and navigation devices. The mission is a cooperative project between the National Aeronautics and Space Administration (NASA), the National Imagery and Mapping Agency (NIMA) of the U.S. Department of Defense (DoD), and the German and Italian space agencies. It is managed by NASA's Jet Propulsion Laboratory, Pasadena, CA, for NASA's Earth Science Enterprise, Washington, DC.Size: 192 km (119 miles) x 142 km (88 miles) Location: 17.8 deg. South lat., 178.0 deg. East lon. Orientation: North at top Date Acquired: February 19, 2000 Image: NASA/JPL/NIMA

  14. Development of artificial nucleic acid that recognizes a CG base pair in triplex DNA formation.

    Science.gov (United States)

    Hari, Yoshiyuki

    2013-01-01

    An oligonucleotide that can form a triplex with double-stranded DNA is called a triplex-forming oligonucleotide (TFO). TFOs have gained considerable attention because of their potential as gene targeting tools. However, triplex DNA formation involves inherent problems for practical use. The most important problem is that natural nucleotides in TFO do not have sufficient affinity and base pair-selectivity to pyrimidine-purine base pair, like a CG or TA base pair, within dsDNA. This suggests that dsDNA region including a CG or TA base pair cannot be targeted. Therefore, artificial nucleotides, especially with non-natural nucleobases, capable of direct recognition of a CG or TA base pair via hydrogen bond formation have been developed; however, nucleotides with better selectivity and stronger affinity are necessary for implementing this dsDNA-targeting technology using TFOs. Under such a background, we considered that facile and efficient synthesis of various nucleobase derivatives in TFOs would be useful for finding an ideal nucleobase for recognition of a CG or TA base pair because detailed and rational exploration of nucleobase structures is facilitated. Recently, to develop a nucleobase recognizing a CG base pair, we have used post-elongation modification, i.e., modification after oligonucleotide synthesis, for the facile synthesis of nucleobase derivatives. This review mainly summarizes our recent findings on the development of artificial nucleobases and nucleotides for recognition of a CG base pair in triplexes formed between dsDNA and TFOs. PMID:24189561

  15. String pair production in non homogeneous backgrounds

    Science.gov (United States)

    Bolognesi, S.; Rabinovici, E.; Tallarita, G.

    2016-04-01

    We consider string pair production in non homogeneous electric backgrounds. We study several particular configurations which can be addressed with the Euclidean world-sheet instanton technique, the analogue of the world-line instanton for particles. In the first case the string is suspended between two D-branes in flat space-time, in the second case the string lives in AdS and terminates on one D-brane (this realizes the holographic Schwinger effect). In some regions of parameter space the result is well approximated by the known analytical formulas, either the particle pair production in non-homogeneous background or the string pair production in homogeneous background. In other cases we see effects which are intrinsically stringy and related to the non-homogeneity of the background. The pair production is enhanced already for particles in time dependent electric field backgrounds. The string nature enhances this even further. For spacial varying electrical background fields the string pair production is less suppressed than the rate of particle pair production. We discuss in some detail how the critical field is affected by the non-homogeneity, for both time and space dependent electric field backgrouds. We also comment on what could be an interesting new prediction for the small field limit. The third case we consider is pair production in holographic confining backgrounds with homogeneous and non-homogeneous fields.

  16. Finding Maximal Pairs with Bounded Gap

    DEFF Research Database (Denmark)

    Brodal, Gerth Stølting; Lyngsø, Rune B.; Pedersen, Christian N. S.;

    1999-01-01

    A pair in a string is the occurrence of the same substring twice. A pair is maximal if the two occurrences of the substring cannot be extended to the left and right without making them different. The gap of a pair is the number of characters between the two occurrences of the substring. In this...... paper we present methods for finding all maximal pairs under various constraints on the gap. In a string of length n we can find all maximal pairs with gap in an upper and lower bounded interval in time O(n log n+z) where z is the number of reported pairs. If the upper bound is removed the time reduces...... to O(n+z). Since a tandem repeat is a pair where the gap is zero, our methods can be seen as a generalization of finding tandem repeats. The running time of our methods equals the running time of well known methods for finding tandem repeats....

  17. P-wave Cooper pair splitting

    Directory of Open Access Journals (Sweden)

    Henning Soller

    2012-07-01

    Full Text Available Background: Splitting of Cooper pairs has recently been realized experimentally for s-wave Cooper pairs. A split Cooper pair represents an entangled two-electron pair state, which has possible application in on-chip quantum computation. Likewise the spin-activity of interfaces in nanoscale tunnel junctions has been investigated theoretically and experimentally in recent years. However, the possible implications of spin-active interfaces in Cooper pair splitters so far have not been investigated.Results: We analyze the current and the cross correlation of currents in a superconductor–ferromagnet beam splitter, including spin-active scattering. Using the Hamiltonian formalism, we calculate the cumulant-generating function of charge transfer. As a first step, we discuss characteristics of the conductance for crossed Andreev reflection in superconductor–ferromagnet beam splitters with s-wave and p-wave superconductors and no spin-active scattering. In a second step, we consider spin-active scattering and show how to realize p-wave splitting using only an s-wave superconductor, through the process of spin-flipped crossed Andreev reflection. We present results for the conductance and cross correlations.Conclusion: Spin-activity of interfaces in Cooper pair splitters allows for new features in ordinary s-wave Cooper pair splitters, that can otherwise only be realized by using p-wave superconductors. In particular, it provides access to Bell states that are different from the typical spin singlet state.

  18. English for au pairs the au pair's guide to learning English

    CERN Document Server

    Curtis, Lucy

    2014-01-01

    English for Au Pairs has interlinked stories about a group of au pairs new to England. Marta, an 18-year-old from Poland arrives in the UK to work as an au pair. Throughout her year-long stay she has many different experiences - some bad, some good - but with the support of her host family she finds new friends and improves her English. English for Au Pairs offers insight into the joys and difficulties of being an au pair while at the same time reinforcing English language learning through grammar explanations and exercises.

  19. A Curious Pair of Galaxies

    Science.gov (United States)

    2009-03-01

    The ESO Very Large Telescope has taken the best image ever of a strange and chaotic duo of interwoven galaxies. The images also contain some surprises -- interlopers both far and near. ESO PR Photo 11a/09 A Curious Pair of Galaxies ESO PR Video 11a/09 Arp 261 zoom in ESO PR Video 11b/09 Pan over Arp 261 Sometimes objects in the sky that appear strange, or different from normal, have a story to tell and prove scientifically very rewarding. This was the idea behind Halton Arp's catalogue of Peculiar Galaxies that appeared in the 1960s. One of the oddballs listed there is Arp 261, which has now been imaged in more detail than ever before using the FORS2 instrument on ESO's Very Large Telescope. The image proves to contain several surprises. Arp 261 lies about 70 million light-years distant in the constellation of Libra, the Scales. Its chaotic and very unusual structure is created by the interaction of two galaxies that are engaged in a slow motion, but highly disruptive close encounter. Although individual stars are very unlikely to collide in such an event, the huge clouds of gas and dust certainly do crash into each other at high speed, leading to the formation of bright new clusters of very hot stars that are clearly seen in the picture. The paths of the existing stars in the galaxies are also dramatically disrupted, creating the faint swirls extending to the upper left and lower right of the image. Both interacting galaxies were probably dwarfs not unlike the Magellanic Clouds orbiting our own galaxy. The images used to create this picture were not actually taken to study the interacting galaxies at all, but to investigate the properties of the inconspicuous object just to the right of the brightest part of Arp 261 and close to the centre of the image. This is an unusual exploding star, called SN 1995N, that is thought to be the result of the final collapse of a massive star at the end of its life, a so-called core collapse supernova. SN 1995N is unusual because

  20. Seventy Million Years of Concerted Evolution of a Homoeologous Chromosome Pair, in Parallel, in Major Poaceae Lineages[W

    Science.gov (United States)

    Wang, Xiyin; Tang, Haibao; Paterson, Andrew H.

    2011-01-01

    Whole genome duplication ~70 million years ago provided raw material for Poaceae (grass) diversification. Comparison of rice (Oryza sativa), sorghum (Sorghum bicolor), maize (Zea mays), and Brachypodium distachyon genomes revealed that one paleo-duplicated chromosome pair has experienced very different evolution than all the others. For tens of millions of years, the two chromosomes have experienced illegitimate recombination that has been temporally restricted in a stepwise manner, producing structural stratification in the chromosomes. These strata formed independently in different grass lineages, with their similarities (low sequence divergence between paleo-duplicated genes) preserved in parallel for millions of years since the divergence of these lineages. The pericentromeric region of this homeologous chromosome pair accounts for two-thirds of the gene content differences between the modern chromosomes. Both intriguing and perplexing is a distal chromosomal region with the greatest DNA similarity between surviving duplicated genes but also with the highest concentration of lineage-specific gene pairs found anywhere in these genomes and with a significantly elevated gene evolutionary rate. Intragenomic similarity near this chromosomal terminus may be important in hom(e)ologous chromosome pairing. Chromosome structural stratification, together with enrichment of autoimmune response–related (nucleotide binding site–leucine-rich repeat) genes and accelerated DNA rearrangement and gene loss, confer a striking resemblance of this grass chromosome pair to the sex chromosomes of other taxa. PMID:21266659

  1. On the average pairing energy in nuclei

    International Nuclear Information System (INIS)

    The macroscopic-microscopic method is applied to calculate the nuclear energies, especially the microscopic shell and pairing corrections. The single-particle levels are obtained with the Yukawa folded mean-field potential. The macroscopic energy is evaluated using the Lublin-Strasbourg Drop model. The shell corrections are obtained using the Strutinsky method with smoothing in nucleon number space. The average nuclear pairing energy is also determined by folding the BCS sums in nucleon number space. The average pairing energy dependence on the nuclear elongation is investigated. (author)

  2. Becoming independent through au pair migration

    DEFF Research Database (Denmark)

    Dalgas, Karina Märcher

    2015-01-01

    article argues that, despite this critique, au pairing does play an important formative role for young Filipinas because it opens up for experiences abroad that enable them to be recognised as independent adults in Philippine society. Rather than autonomy, however, au pairs define their independence in...... terms of their capacity to assume responsibility for others, thereby achieving a position of social respect. Based on ethnographic fieldwork in Denmark and the Philippines, this article explores how young Filipinas use the social, economic, and cultural resources they gain from their au pair stay abroad...

  3. Categorical Pairs and the Indicative Shift

    OpenAIRE

    Kauffman, Louis H.

    2011-01-01

    This paper introduces the notion of a categorical pair, a pair of categories (C,C') such that every morphism in C is an object in C'. Categorical pairs are precursors to 2-categories. Arrows in C' can express relationships among the morphisms of C. In particular we show that by using a model of the linguistic process of naming, we can ensure that every morphism in C has an indirect self-reference of the form a -----> Fa where this arrow occurs in the category C'. This result is shown to gener...

  4. Implementation of New Pairing Technique for Studying the Effectiveness of Pairs on Persona and Programming

    Directory of Open Access Journals (Sweden)

    HARSIMARJEET KHURANA

    2011-01-01

    Full Text Available This paper reports on a study in which persona for the category of paired and solo students were compared on the parameter like program clarity, presentation, satisfaction level and confidence level, also the effectiveness of pairs in a JAVA programming language and the impact of pairs on each other. In this study same programs were given to all the category of paired and solo students. Finding reported in this paper are that pairing students were more likely to turn in working programs, and these programs were correctly implemented with more required features as compared to solo students. It has been observed that pairing of intelligent, average and poor with themselves has not shown significant differences but we have seen significant differences with combination of pairs.

  5. Isovectorial pairing in solvable and algebraic models

    International Nuclear Information System (INIS)

    Schematic interactions are useful to gain some insight in the behavior of very complicated systems such as the atomic nuclei. Prototypical examples are, in this context, the pairing interaction and the quadrupole interaction of the Elliot model. In this contribution the interplay between isovectorial pairing, spin-orbit, and quadrupole terms in a harmonic oscillator shell (the so-called pairing-plus-quadrupole model) is studied by algebraic methods. The ability of this model to provide a realistic description of N = Z even-even nuclei in the fp-shell is illustrated with 44Ti. Our calculations which derive from schematic and simple terms confirm earlier conclusions obtained by using realistic interactions: the SU(3) symmetry of the quadrupole term is broken mainly by the spin-orbit term, but the energies depends strongly on pairing.

  6. Robustness of quantum critical pairing against disorder

    Science.gov (United States)

    Kang, Jian; Fernandes, Rafael M.

    2016-06-01

    The remarkable robustness of high-temperature superconductors against disorder remains a controversial obstacle towards the elucidation of their pairing state. Indeed, experiments report a weak suppression rate of the transition temperature Tc with disorder, significantly smaller than the universal value predicted by extensions of the conventional theory of dirty superconductors. However, in many high-Tc compounds, superconductivity appears near a putative magnetic quantum critical point, suggesting that quantum fluctuations, which suppress coherent electronic spectral weight, may also promote unconventional pairing. Here we investigate theoretically the impact of disorder on such a quantum critical pairing state, considering the coupling of impurities both to the low-energy electronic states and to the pairing interaction itself. We find a significant reduction in the suppression rate of Tc with disorder near the magnetic quantum critical point, shedding new light on the nature of unconventional superconductivity in correlated materials.

  7. Large amplitude pairing fluctuations in atomic nuclei

    CERN Document Server

    Vaquero, Nuria López; Rodríguez, Tomás R

    2013-01-01

    Pairing fluctuations are self-consistently incorporated on the same footing as the quadrupole deformations in present state of the art calculations including particle number and angular momentum conservation as well as configuration mixing. The approach is complemented by the use of the finite range density dependent Gogny force which, with a unique source for the particle-hole and particle-particle interactions, guarantees a self-consistent interplay in both channels. We have applied our formalism to study the role of the pairing degree of freedom in the description of the most relevant observables like spectra, transition probabilities, separation energies, etc. We find that the inclusion of pairing fluctuations mostly affects the description of excited states, depending on the excitation energy and the angular momentum. $E0$ transition probabilities experiment rather big changes while $E2$'s are less affected. Genuine pairing vibrations are thoroughly studied with the conclusion that deformations strongly ...

  8. A Pair Polarimeter for High Energy Photons

    Science.gov (United States)

    Tedeschi, David; Wojtsekhowski, B.; Abbott, D.; Vlahovic, B.; Hotta, T.; Kohri, H.; Matsumura, T.; Mibe, T.; Nakano, T.; Yurita, T.; Zegers, R.; Khandaker, M.; Feldman, G.; O'Rielly, G. V.; Wood, M.; Asai, G.; Rudge, A.; Weilhammer, P.

    2001-10-01

    The physics program at the Thomas Jefferson National Accelerator Facility includes fundamental experiments with polarized photon beams in the GeV energy range. To measure the degree of photon polarization, a photon polarimeter based on the detection of e^+e^- pairs has been developed for use in Hall B and was recently tested at the LEPS facility at SPring-8 in Japan. The use of silicon micro-strip detectors allows for the first time the measurement of the angle correlation in electron-positron pair production by high energy photons incident on an amorphous converter. Theoretical calculations of the pair production process show an asymmetry σ_allel/σ_⊥ ~ 1.7 in a wide range of photon energies. Experimental results from the measurement of the pair asymmetry using 2 GeV photons from the SPring-8 facility will be presented.

  9. Four square mile survey pair count instructions

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — This standard operating procedure (SOP) provides guidance for conducting bird pair count measurements on wetlands for the HAPETs Four-Square-Mile survey. This set...

  10. Z-related pairs in microtonal systems

    NARCIS (Netherlands)

    Althuis, T.A.; Göbel, F.

    2000-01-01

    Various infinite families of Z-related pairs in microtonal systems are presented. Soderberg's dual inversion is compared to a more special transformation, the one-pitch shift. The material is illustrated by several examples.

  11. Pairing properties of realistic effective interactions

    Directory of Open Access Journals (Sweden)

    Gargano A.

    2016-01-01

    Full Text Available We investigate the pairing properties of an effective shell-model interaction defined within a model space outside 132Sn and derived by means of perturbation theory from the CD-Bonn free nucleon-nucleon potential. It turns out that the neutron pairing component of the effective interaction is significantly weaker than the proton one, which accounts for the large pairing gap difference observed in the two-valence identical particle nuclei 134Sn and 134Te. The role of the contribution arising from one particle-one hole excitations in determining the pairing force is discussed and its microscopic structure is also analyzed in terms of the multipole decomposition.

  12. Engineering a factorable photon pair source

    Energy Technology Data Exchange (ETDEWEB)

    Zielnicki, Kevin; Kwiat, Paul [University of Illinois, Urbana-Champaign, Illinois 61801 (United States)

    2014-12-04

    Spontaneous parametric downconversion is an important process for producing pairs of photons for quantum optics. We discuss a scheme for eliminating undesired inter-photon correlations inherent in this process, and an efficient characterization of spectral correlations.

  13. Pairing vibrations in semimagic even nuclei

    International Nuclear Information System (INIS)

    The shifts in the energies of pairing vibrations due to the presence of valence nucleons are described in simple terms. Calculations are reported for the Z = 50 isotopes and N = 82 isotones and compared with experiment

  14. Comments on Coulomb pairing in aromatic hydrocarbons

    CERN Document Server

    Huber, D L

    2013-01-01

    Recently reported anomalies in the double-photonionization spectra of aromatic molecules such as benzene, naphthalene, anthracene and coronene are attributed to Coulomb-pair resonances of pi electrons.

  15. Colors of Dynamically Associated Asteroid Pairs

    CERN Document Server

    Moskovitz, Nicholas

    2012-01-01

    Recent dynamical studies have identified pairs of asteroids that reside in nearly identical heliocentric orbits. Possible formation scenarios for these systems include dissociation of binary asteroids, collisional disruption of a single parent body, or spin-up and rotational fission of a rubble-pile. Aside from detailed dynamical analyses and measurement of rotational light curves, little work has been done to investigate the colors or spectra of these unusual objects. A photometric and spectroscopic survey was conducted to determine the reflectance properties of asteroid pairs. New observations were obtained for a total of 34 individual asteroids. Additional photometric measurements were retrieved from the Sloan Digital Sky Survey Moving Object Catalog. Colors or spectra for a total of 42 pair components are presented here. The main findings of this work are: (1) the components in the observed pair systems have the same colors within the uncertainties of this survey, and (2) the color distribution of asteroi...

  16. Exactly solvable pairing Hamiltonian for heavy nuclei

    International Nuclear Information System (INIS)

    We present a new exactly solvable Hamiltonian with a separable pairing interaction and nondegenerate single-particle energies. It is derived from the hyperbolic family of Richardson-Gaudin models and possesses two free parameters, one related to an interaction cutoff and the other to the pairing strength. These two parameters can be adjusted to give an excellent reproduction of Gogny self-consistent mean-field calculations in the Hartree-Fock basis.

  17. A Cubic Micron of Equilibrium Pair Plasma?

    OpenAIRE

    Katz, J. I.

    1998-01-01

    Is it possible to create a small volume of equilibrium pair plasma in the laboratory with an intense laser pulse? No. The required power would exceed 10^{18} W. The number of seed particles required to absorb the laser energy would approach the number of pairs in the desired plasma, and their radiation in a visible laser field would occur at extremely high frequencies.

  18. Influence of quadrupole pairing on backbending

    International Nuclear Information System (INIS)

    The backbending phenomenon is attributed to the Coriolis antipairing and the rotational alignment effects. We can consider both effects simultaneously by applying the cranked Hartree-Fock-Bogoliubov theory to the description of the rotational motion of nuclei. In usual treatments of the backbending, however, only the monopole pairing force is considered and pairing forces of other types are neglected. This may be the main reason for starting of the backbending at too small total angular momentum in theoretical results. (orig.)

  19. Arithmetic Operators for Pairing-Based Cryptography

    OpenAIRE

    Beuchat, Jean-Luc; Brisebarre, Nicolas; Detrey, Jérémie; Okamoto, Eiji

    2007-01-01

    Since their introduction in constructive cryptographic applications, pairings over (hyper)elliptic curves are at the heart of an ever increasing number of protocols. Software implementations being rather slow, the study of hardware architectures became an active research area. In this paper, we first study an accelerator for the eta_T pairing over F_3[x]/(x^97 + x^12 + 2). Our architecture is based on a unified arithmetic operator which performs addition, multiplication, and cubing over F_3^9...

  20. On the analysis of phylogenetically paired designs

    OpenAIRE

    Funk, Jennifer L.; Rakovski, Cyril S; Macpherson, J Michael

    2015-01-01

    As phylogenetically controlled experimental designs become increasingly common in ecology, the need arises for a standardized statistical treatment of these datasets. Phylogenetically paired designs circumvent the need for resolved phylogenies and have been used to compare species groups, particularly in the areas of invasion biology and adaptation. Despite the widespread use of this approach, the statistical analysis of paired designs has not been critically evaluated. We propose a mixed mod...

  1. Implementing cryptographic pairings at standard security levels

    OpenAIRE

    Enge, Andreas; Milan, Jérôme

    2014-01-01

    This study reports on an implementation of cryptographic pairings in a general purpose computer algebra system. For security levels equivalent to the different AES flavours, we exhibit suitable curves in parametric families and show that optimal ate and twisted ate pairings exist and can be efficiently evaluated. We provide a correct description of Miller's algorithm for signed binary expansions such as the NAF and extend a recent variant due to Boxall et al. to addition-subtraction chains. W...

  2. Pairs trading profitability and style investing

    OpenAIRE

    Franco, Sara das Neves

    2014-01-01

    This dissertation studies the performance of the pairs trading strategy in the US stock market between 1962 and 2013. We find that this strategy remains profitable up to the current days, though these profits have been gradually falling. We show that investors are able to outperform the pure statistical arbitrage strategy, if they restrict the pairs matching to same-industry stocks, as they benefit from permanent links. Foremost, we find that industry, size, momentum and volatility style inve...

  3. Turbulent pair dispersion of inertial particles

    OpenAIRE

    Bec, J; Biferale, L.; Lanotte, A.S.; Scagliarini, A; Toschi, F.

    2009-01-01

    The relative dispersion of pairs of inertial particles in incompressible, homogeneous, and isotropic turbulence is studied by means of direct numerical simulations at two values of the Taylor-scale Reynolds number $Re_{\\lambda} \\sim 200$ and 400. The evolution of both heavy and light particle pairs is analysed at varying the particle Stokes number and the fluid-to-particle density ratio. For heavy particles, it is found that turbulent dispersion is schematically governed by two temporal regim...

  4. Rootless pairs of $EE_8$-lattices

    OpenAIRE

    Griess, Jr., Robert L.; lam, Ching Hung

    2008-01-01

    We describe a classification of pairs $M, N$ of lattices isometric to $EE_8:=\\sqrt 2 E_8$ such that the lattice $M + N$ is integral and rootless and such that the dihedral group associated to them has order at most 12. It turns out that most of these pairs may be embedded in the Leech lattice. Complete proofs will appear in another article. This theory of integral lattices has connections to vertex operator algebra theory and moonshine.

  5. DNA pairing is an important step in the process of targeted nucleotide exchange

    OpenAIRE

    Drury, Miya D.; Kmiec, Eric B.

    2003-01-01

    Modified single-stranded DNA oligonucleotides can direct the repair of genetic mutations in yeast, plant and mammalian cells. The mechanism by which these molecules exert their effect is being elucidated, but the first phase is likely to involve the homologous alignment of the single strand with its complementary sequence in the target gene. In this study, we establish the importance of such DNA pairing in facilitating the gene repair event. Oligonucleotide-directed repair occurs at a low fre...

  6. Migration of helium-pair in metals

    Science.gov (United States)

    Cao, J. L.; Geng, W. T.

    2016-09-01

    We have carried out a first-principles density functional theory investigation into the migration of both a single interstitial He and an interstitial He-pair in Fe, Mo, W, Cu, Pd, and Pt. We find the migration trajectories and barriers are determined predominantly by low-energy He-pair configurations which depend mainly on the energy state of a single He in different interstices. The migration barrier for a He-pair in bcc metals is always slightly higher than for a single He. Configurations of a He-pair in fcc metals are very complicated, due to the existence of interstitial sites with nearly identical energy for a single He. The migration barrier for a He-pair is slightly lower than (in Cu), or similar to (in Pd and Pt) a single He. The collective migrations of a He-pair are ensured by strong Hesbnd He interactions with strength-versus-distance forms resembling chemical bonds and can be described with Morse potentials.

  7. An evaluation of the genetic-matched pair study design using genome-wide SNP data from the European population

    DEFF Research Database (Denmark)

    Lu, Timothy Tehua; Lao, Oscar; Nothnagel, Michael;

    2009-01-01

    Genetic matching potentially provides a means to alleviate the effects of incomplete Mendelian randomization in population-based gene-disease association studies. We therefore evaluated the genetic-matched pair study design on the basis of genome-wide SNP data (309,790 markers; Affymetrix Gene...

  8. A 3-base pair deletion, c.9711_9713del, in DMD results in intellectual disability without muscular dystrophy

    NARCIS (Netherlands)

    de Brouwer, Arjan P. M.; Nabuurs, Sander B.; Verhaart, Ingrid E. C.; Oudakker, Astrid R.; Hordijk, Roel; Yntema, Helger G.; Hordijk-Hos, Jannet M.; Voesenek, Krysta; de Vries, Bert B. A.; van Essen, Ton; Chen, Wei; Hu, Hao; Chelly, Jamel; den Dunnen, Johan T.; Kalscheuer, Vera M.; Aartsma-Rus, Annemieke M.; Hamel, Ben C. J.; van Bokhoven, Hans; Kleefstra, Tjitske

    2014-01-01

    We have identified a deletion of 3 base pairs in the dystrophin gene (DMD), c.9711_9713del, in a family with nonspecific X-linked intellectual disability (ID) by sequencing of the exons of 86 known X-linked ID genes. This in-frame deletion results in the deletion of a single-amino-acid residue, Leu3

  9. Hydrogen atomic pair-ion production on catalyst surface

    International Nuclear Information System (INIS)

    To generate a hydrogen pair-ion plasma consisting of only hydrogen atomic pair ions, i.e., H+ and H- ions, the efficient production of pair ions is required. When discharged hydrogen plasma is irradiated to a Ni catalyst, pair ions are produced on the catalyst surface. It is clarified that hydrogen chemisorption on the catalyst affects pair-ion production.

  10. Pairing of homologous regions in the mouse genome is associated with transcription but not imprinting status.

    Directory of Open Access Journals (Sweden)

    Christel Krueger

    Full Text Available Although somatic homologous pairing is common in Drosophila it is not generally observed in mammalian cells. However, a number of regions have recently been shown to come into close proximity with their homologous allele, and it has been proposed that pairing might be involved in the establishment or maintenance of monoallelic expression. Here, we investigate the pairing properties of various imprinted and non-imprinted regions in mouse tissues and ES cells. We find by allele-specific 4C-Seq and DNA FISH that the Kcnq1 imprinted region displays frequent pairing but that this is not dependent on monoallelic expression. We demonstrate that pairing involves larger chromosomal regions and that the two chromosome territories come close together. Frequent pairing is not associated with imprinted status or DNA repair, but is influenced by chromosomal location and transcription. We propose that homologous pairing is not exclusive to specialised regions or specific functional events, and speculate that it provides the cell with the opportunity of trans-allelic effects on gene regulation.

  11. Asynchronous replication and autosome-pair non-equivalence in human embryonic stem cells.

    Directory of Open Access Journals (Sweden)

    Devkanya Dutta

    Full Text Available A number of mammalian genes exhibit the unusual properties of random monoallelic expression and random asynchronous replication. Such exceptional genes include genes subject to X inactivation and autosomal genes including odorant receptors, immunoglobulins, interleukins, pheromone receptors, and p120 catenin. In differentiated cells, random asynchronous replication of interspersed autosomal genes is coordinated at the whole chromosome level, indicative of chromosome-pair non-equivalence. Here we have investigated the replication pattern of the random asynchronously replicating genes in undifferentiated human embryonic stem cells, using fluorescence in situ hybridization based assay. We show that allele-specific replication of X-linked genes and random monoallelic autosomal genes occur in human embryonic stem cells. The direction of replication is coordinated at the whole chromosome level and can cross the centromere, indicating the existence of autosome-pair non-equivalence in human embryonic stem cells. These results suggest that epigenetic mechanism(s that randomly distinguish between two parental alleles are emerging in the cells of the inner cell mass, the source of human embryonic stem cells.

  12. String pair production in non homogeneous backgrounds

    CERN Document Server

    Bolognesi, Stefano; Tallarita, Gianni

    2016-01-01

    We consider string pair production in non homogeneous electric backgrounds. We study several particular configurations which can be addressed with the Euclidean world-sheet instanton technique, the analogue of the world-line instanton for particles. In the first case the string is suspended between two D-branes in flat space-time, in the second case the string lives in AdS and terminates on one D-brane (this realizes the holographic Schwinger effect). In some regions of parameter space the result is well approximated by the known analytical formulas, either the particle pair production in non-homogeneous background or the string pair production in homogeneous background. In other cases we see effects which are intrinsically stringy and related to the non-homogeneity of the background. The pair production is enhanced already for particles in time dependent electric field backgrounds. The string nature enhances this even further. For spacial varying electrical background fields the string pair production is les...

  13. Pair creation of black holes during inflation

    CERN Document Server

    Bousso, R; Bousso, Raphael; Hawking, Stephen W

    1996-01-01

    Black holes came into existence together with the universe through the quantum process of pair creation in the inflationary era. We present the instantons responsible for this process and calculate the pair creation rate from the no boundary proposal for the wave function of the universe. We find that this proposal leads to physically sensible results, which fit in with other descriptions of pair creation, while the tunnelling proposal makes unphysical predictions. We then describe how the pair created black holes evolve during inflation. In the classical solution, they grow with the horizon scale during the slow roll-down of the inflaton field; this is shown to correspond to the flux of field energy across the horizon according to the First Law of black hole mechanics. When quantum effects are taken into account, however, it is found that most black holes evaporate before the end of inflation. Finally, we consider the pair creation of magnetically charged black holes, which cannot evaporate. In standard Eins...

  14. Pair creation of black holes during inflation

    Science.gov (United States)

    Bousso, Raphael; Hawking, Stephen W.

    1996-11-01

    Black holes came into existence together with the universe through the quantum process of pair creation in the inflationary era. We present the instantons responsible for this process and calculate the pair creation rate from the no boundary proposal for the wave function of the universe. We find that this proposal leads to physically sensible results, which fit in with other descriptions of pair creation, while the tunneling proposal makes unphysical predictions. We then describe how the pair-created black holes evolve during inflation. In the classical solution, they grow with the horizon scale during the slow roll down of the inflaton field; this is shown to correspond to the flux of field energy across the horizon according to the first law of black hole mechanics. When quantum effects are taken into account, however, it is found that most black holes evaporate before the end of inflation. Finally, we consider the pair creation of magnetically charged black holes, which cannot evaporate. In standard Einstein-Maxwell theory we find that their number in the presently observable universe is exponentially small. We speculate how this conclusion may change if dilatonic theories are applied.

  15. Pairing and specific heat in hot nuclei

    CERN Document Server

    Gambacurta, Danilo; Sandulescu, Nicu

    2013-01-01

    The thermodynamics of pairing phase-transition in nuclei is studied in the canonical ensemble and treating the pairing correlations in a finite-temperature variation after projection BCS approach (FT-VAP). Due to the restoration of particle number conservation, the pairing gap and the specific heat calculated in the FT-VAP approach vary smoothly with the temperature, indicating a gradual transition from the superfluid to the normal phase, as expected in finite systems. We have checked that the predictions of the FT-VAP approach are very accurate when compared to the results obtained by an exact diagonalization of the pairing Hamiltonian. The influence of pairing correlations on specific heat is analysed for the isotopes $^{161,162}$Dy and $^{171,172}$Yb. It is shown that the FT-VAP approach, applied with a level density provided by mean field calculations and supplemented, at high energies, by the level density of the back-shifted Fermi gas model, can approximate reasonably well the main properties of specifi...

  16. Extracting gene-gene interactions through curve fitting.

    Science.gov (United States)

    Das, Ranajit; Mitra, Sushmita; Murthy, C A

    2012-12-01

    This paper presents a simple and novel curve fitting approach for generating simple gene regulatory subnetworks from time series gene expression data. Microarray experiments simultaneously generate massive data sets and help immensely in the large-scale study of gene expression patterns. Initial biclustering reduces the search space in the high-dimensional microarray data. The least-squares error between fitting of gene pairs is minimized to extract a set of gene-gene interactions, involving transcriptional regulation of genes. The higher error values are eliminated to retain only the strong interacting gene pairs in the resultant gene regulatory subnetwork. Next the algorithm is extended to a generalized framework to enhance its capability. The methodology takes care of the higher-order dependencies involving multiple genes co-regulating a single gene, while eliminating the need for user-defined parameters. It has been applied to the time-series Yeast data, and the experimental results biologically validated using standard databases and literature. PMID:22997274

  17. Cooper-pair splitter: towards an efficient source of spin-entangled EPR pairs

    Science.gov (United States)

    Schonenberger, Christian

    2011-03-01

    In quantum mechanics the properties of two and more particles can be entangled. In basic science pairs of entangled particles, so called Einstein-Podolsky-Rosen (EPR) pairs, play a special role as toy objects for fundamental studies. They provide such things as ``spooky interaction at distance,'' but they also enable secure encoding and teleportation and are thus important for applications in quantum information technology. Whereas EPR pairs of photons can be generated by parametric down conversion (PDC) in a crystal, a similar source for EPR pairs of electrons does not exists yet. In several theory papers, it has been suggested to use a superconductor for this purpose. The superconducting ground state is formed by a condensate of Cooper-pairs which are electron pairs in a spin-singlet state. Since there are many Cooper pairs in a metallic superconductor like Al, the main tasks are to extract Cooper pairs one by one and to split them into different arms. A controlled and efficient splitting is possible if one makes use of Coulomb interaction. This has recently be demonstrated by two groups [2-4] using hybrid quantum-dot devices with both superconducting and normal metal contacts. In the present talk, I will discuss the Cooper-pair splitter results from the Basel-Budapest-Copenhagen team and compare with the other experiments. As an outlook we discuss approaches that aim at entanglement detection. The Cooper pair splitter holds great promises because very large splitting efficiencies approaching 100% and large pair current rates appear feasible. This work has been done by L. Hofstetter, S. Csonka, A. Geresdi, M. Aagesen, J. Nygard and C. Schönenberger

  18. Pair Creation in the Pulsar Magnetosphere

    CERN Document Server

    Eilek, J A

    2002-01-01

    We present numerical simulations of the electron-positron plasma creation process in a simple neutron star magnetosphere. We have developed a set of cascade `kernels', which represent the endpoint of the pair cascades resulting from monoenergetic photon seeds. We explore two popular models by convolving these kernels with the seed photon distributions produced by curvature radiation and by inverse Compton scattering. We find that the pair plasma in either case is well-described in its rest frame by a relativistic Maxwellian distribution with temperature near mc^2/k_B. We present cascade multiplicities and efficiencies for a range of seed particle energies and stellar magnetic fields. We find that the efficiencies and multiplicities of pair creation are often lower than has been assumed in previous work.

  19. Thermodynamics of pairing transition in hot nuclei

    CERN Document Server

    Liu, Lang; Zhao, Peng-Wei

    2014-01-01

    The pairing correlations in hot nuclei $^{162}$Dy are investigated in terms of the thermodynamical properties by covariant density functional theory. The heat capacities $C_V$ are evaluated in the canonical ensemble theory and the paring correlations are treated by a shell-model-like approach, in which the particle number is conserved exactly. A S-shaped heat capacity curve, which agrees qualitatively with the experimental data, has been obtained and analyzed in details. It is found that the one-pair-broken states play crucial roles in the appearance of the S shape of the heat capacity curve. Moreover, due to the effect of the particle-number conservation, the pairing gap varies smoothly with the temperature, which indicates a gradual transition from the superfluid to the normal state.

  20. Complex conjugate pairs in stationary Sturmians

    International Nuclear Information System (INIS)

    Sturmian expansions enable a simply accurate separable specification of two nucleon t matrices based upon realistic two nucleon interactions. Sturmian eigenstates specified by stationary scattering boundary conditions are particularly useful in that context, and they can be calculated by solving a generalised eigenvalue equation using real and symmetric matrices. In general, the spectrum of such an equation may contain complex eigenvalues. But to each complex eigenvalues there is a corresponding conjugate partner. In studies using realistic two nucleon potentials, and in certain positive energy intervals, these complex conjugated pairs indeed appear in the Sturmian spectrum. However, it is demonstrated that it is possible to recombine the complex conjugate pairs and corresponding states into a new, (and useful) pair of real eigenvalues and eigenstates with which of effect separable expansions of the (real) two nucleon reactance matrices. 8 refs

  1. Complex conjugate pairs in stationary Sturmian eigenstates

    International Nuclear Information System (INIS)

    Sturmian eigenstates specified by stationary scattering boundary conditions are particularly useful in contexts such as forming simple separable two nucleon t matrices, and are determined via solution of generalized eigenvalue equation using real and symmetric matrices. In general, the spectrum of such an equation may contain complex eigenvalues. But to each complex eigenvalue there is a corresponding conjugate partner. In studies using realistic nucleon-nucleon potentials, and in certain positive energy intervals, these complex conjugated pairs indeed appear in the Sturmian spectrum. However, as we demonstrate herein, it is possible to recombine the complex conjugate pairs and corresponding states into a new, sign-definite pair of real quantities with which to effect separable expansions of the (real) nucleon-nucleon reactance matrices

  2. Entropy, area, and black hole pairs

    CERN Document Server

    Hawking, Stephen William; Ross, S F; Hawking, S W; Horowitz, Gary T; Ross, Simon F

    1995-01-01

    We clarify the relation between gravitational entropy and the area of horizons. We first show that the entropy of an extreme Reissner-Nordstr\\"om black hole is zero, despite the fact that its horizon has nonzero area. Next, we consider the pair creation of extremal and nonextremal black holes. It is shown that the action which governs the rate of this pair creation is directly related to the area of the acceleration horizon and (in the nonextremal case) the area of the black hole event horizon. This provides a simple explanation of the result that the rate of pair creation of non-extreme black holes is enhanced by precisely the black hole entropy. Finally, we discuss black hole annihilation, and argue that Planck scale remnants are not sufficient to preserve unitarity in quantum gravity.

  3. Entropy, area, and black hole pairs

    Science.gov (United States)

    Hawking, S. W.; Horowitz, Gary T.; Ross, Simon F.

    1995-04-01

    We clarify the relation between gravitational entropy and the area of horizons. We first show that the entropy of an extreme Reissner-Nordström black hole is zero, despite the fact that its horizon has nonzero area. Next, we consider the pair creation of extremal and nonextremal black holes. It is shown that the action which governs the rate of this pair creation is directly related to the area of the acceleration horizon and (in the nonextremal case) the area of the black hole event horizon. This provides a simple explanation of the result that the rate of pair creation of nonextreme black holes is enhanced by precisely the black hole entropy. Finally, we discuss black hole annihilation, and argue that Planck scale remnants are not sufficient to preserve unitarity in quantum gravity.

  4. Theoretical analysis of novel fiber grating pair

    Science.gov (United States)

    Wang, Liao; Jia, Hongzhi; Fang, Liang; You, Bei

    2016-06-01

    A novel fiber grating pair that consists of a conventional long-period fiber grating and a fiber Bragg cladding grating (FBCG) is proposed. The FBCG is a new type of fiber grating in which refractive index modulation is formed in the cladding. Through the coupled-mode theory, we accurately calculate the coupling coefficients between modes supported in the fibers. And some other mode coupling features in the fiber cladding gratings are analyzed in detail. The calculation of the modes involved in this paper is based on a model of three-layer step-index fiber geometry. Then, we have investigated the sensitivity characteristics for variation of the modulation strengths of the fiber Bragg cladding gratings' resonance peaks and the long-period cladding gratings' (LPCGs) dual resonant peaks. Finally, the modulation strength sensitivity of the grating pair's three resonant peaks is demonstrated, and the results indicate that these grating pairs may find potential applications in optical fiber sensing.

  5. Complex Conjugate Pairs in Stationary Sturmians

    CERN Document Server

    Dortmans, P J; Pisent, G; Amos, K A

    1993-01-01

    Sturmian eigenstates specified by stationary scattering boundary conditions are particularly useful in contexts such as forming simple separable two nucleon t matrices, and are determined via solution of generalised eigenvalue equation using real and symmetric matrices. In general, the spectrum of such an equation may contain complex eigenvalues. But to each complex eigenvalue there is a corresponding conjugate partner. In studies using realistic nucleon--nucleon potentials, and in certain positive energy intervals, these complex conjugated pairs indeed appear in the Sturmian spectrum. However, as we demonstrate herein, it is possible to recombine the complex conjugate pairs and corresponding states into a new, sign--definite pair of real quantities with which to effect separable expansions of the (real) nucleon--nucleon reactance matrices.

  6. The inverse problem for Schwinger pair production

    Directory of Open Access Journals (Sweden)

    F. Hebenstreit

    2016-02-01

    Full Text Available The production of electron–positron pairs in time-dependent electric fields (Schwinger mechanism depends non-linearly on the applied field profile. Accordingly, the resulting momentum spectrum is extremely sensitive to small variations of the field parameters. Owing to this non-linear dependence it is so far unpredictable how to choose a field configuration such that a predetermined momentum distribution is generated. We show that quantum kinetic theory along with optimal control theory can be used to approximately solve this inverse problem for Schwinger pair production. We exemplify this by studying the superposition of a small number of harmonic components resulting in predetermined signatures in the asymptotic momentum spectrum. In the long run, our results could facilitate the observation of this yet unobserved pair production mechanism in quantum electrodynamics by providing suggestions for tailored field configurations.

  7. Hard Photodisintegration of a Proton Pair

    CERN Document Server

    Pomerantz, I; Allada, K; Beck, A; Beck, S; Berman, B L; Boeglin, W; Camsonne, A; Canan, M; Chirapatpimol, K; Cisbani, E; Cusanno, F; De Jager, C W; Dutta, C; Garibaldi, F; Geagla, O; Gilman, R; Glister, J; Higinbotham, D W; Jiang, X; Katramatou, A T; Khrosinkova, E; Lee, B; LeRose, J J; Lindgren, R; McCullough, E; Meekins, D; Michaels, R; Moffit, B; Petratos, G G; Piasetzky, E; Qian, X; Qiang, Y; Rodriguez, I; Ron, G; Saha, A; Sarty, A J; Sawatzky, B; Schulte, E; Shneor, R; Sparveris, N; Subedi, R; Strauch, S; Sulkosky, V; Wang, Y; Wojtsekhowski, B; Yan, X; Yao, H; Zhan, X; Zheng, X

    2009-01-01

    We present the first study of high energy photodisintegration of proton-pairs through the gamma + 3He -> p+p+n channel. Photon energies from 0.8 to 4.7 GeV were used in kinematics corresponding to a proton pair with high relative momentum and a neutron nearly at rest. An s^{-11} scaling of the cross section was observed, as predicted by the constituent counting rule. The onset of the scaling is at a higher energy and the cross section is significantly lower then for pn pair photodisintegration. For photon energies below the scaling region, the scaled cross section was found to present a strong energy-dependent structure not observed in deuteron photodisintegration.

  8. Pairing effects in N =82 isotones

    Energy Technology Data Exchange (ETDEWEB)

    Andreozzi, F.; Covello, A.; Gargano, A.; Porrino, A. (Dipartimento di Scienze Fisiche, Universita di Napoli, Napoli (Italy) Istituto Nazionale di Fisica Nucleare, 80125 Napoli (Italy))

    1990-01-01

    The importance of pairing effects in the {ital N}=82 isotones is extensively investigated by studying the string of nuclei with {ital A} ranging from 135 to 151. The pairing Hamiltonian is treated by an equations-of-motion method which is strictly number conserving. The coupling strength is determined by an analysis of the properties of the even-mass isotones. The single-particle energies are extracted from the experimental spectra of {sup 137}Cs and {sup 145}Eu through use of the equations which give the energies of the seniority-one states in a way which is analogous to the inverse gap equation method. A detailed comparison of the calculated results with experimental data in even and odd nuclei provides firm evidence of the prominent role of proton pairing correlations in the 50--82 shell. It is found that non-negligible correlations are present in {sup 146}Gd.

  9. Re-Pair Compression of Inverted Lists

    CERN Document Server

    Claude, Francisco; Navarro, Gonzalo

    2009-01-01

    Compression of inverted lists with methods that support fast intersection operations is an active research topic. Most compression schemes rely on encoding differences between consecutive positions with techniques that favor small numbers. In this paper we explore a completely different alternative: We use Re-Pair compression of those differences. While Re-Pair by itself offers fast decompression at arbitrary positions in main and secondary memory, we introduce variants that in addition speed up the operations required for inverted list intersection. We compare the resulting data structures with several recent proposals under various list intersection algorithms, to conclude that our Re-Pair variants offer an interesting time/space tradeoff for this problem, yet further improvements are required for it to improve upon the state of the art.

  10. Induced Pairing Interaction in Neutron Star Matter

    Science.gov (United States)

    Lombardo, U.; Schulze, H.-J.; Zuo, W.

    2013-01-01

    The three superfluid phases supposed to occur in neutron stars are reviewed in the framework of the generalized BCS theory with the induced interaction. The structure of neutron stars characterized by beta-stable asymmetric nuclear matter in equilibrium with the gravitational force discloses new aspects of the pairing mechanism. Some of them are discussed in this report, in particular the formation in dense matter of Cooper pairs in the presence of three-body forces and the interplay between repulsive and attractive polarization effects on isospin T = 1 Cooper pairs embedded into the neutron and proton environment. Quantitative estimates of the energy gaps are reported and their sensitivity to the medium effects, i.e., interaction and polarization, is explored.

  11. Holographic EPR Pairs, Wormholes and Radiation

    CERN Document Server

    Chernicoff, Mariano; Pedraza, Juan F

    2013-01-01

    As evidence for the ER=EPR conjecture, it has recently been observed that the string that is holographically dual to an entangled quark-antiquark pair separating with (asymptotically) uniform acceleration has a wormhole on its worldsheet. We point out that a two-sided horizon and a wormhole actually appear for much more generic quark-antiquark trajectories, which is consistent with the fact that the members of an EPR pair need not be permanently out of causal contact. The feature that determines whether the causal structure of the string worldsheet is trivial or not turns out to be the emission of gluonic radiation by the dual quark and antiquark. In the strongly-coupled gauge theory, it is only when radiation is emitted that one obtains an unambiguous separation of the pair into entangled subsystems, and this is what is reflected on the gravity side by the existence of the worldsheet horizon.

  12. Narrowband Photon Pair Source for Quantum Networks

    CERN Document Server

    Monteiro, F; Sanguinetti, B; Zbinden, H; Thew, R T

    2013-01-01

    We demonstrate a compact photon pair source based on a periodically poled lithium niobate nonlinear crystal in a cavity. The cavity parameters are chosen such that the emitted photon pair modes can be matched in the region of telecom ultra dense wavelength division multiplexing (U-DWDM) channel spacings. This approach provides efficient, low-loss, mode selection that is compatible with standard telecommunication networks. Photons with a coherence time of 8.6 ns (116 MHz) are produced and their purity is demonstrated. A source brightness of 134 pairs(s.mW.MHz)$^{-1}$ is reported. The high level of purity and compatibility with standard telecom networks is of great importance for complex quantum communication networks.

  13. Toric CFTs, Permutation Triples and Belyi Pairs

    CERN Document Server

    Jejjala, Vishnu; Rodriguez-Gomez, Diego

    2010-01-01

    Four-dimensional CFTs dual to branes transverse to toric Calabi--Yau threefolds have been described by bipartite graphs on a torus (dimer models). We use the theory of dessins d'enfants to describe these in terms of triples of permutations which multiply to one. These permutations yield an elegant description of zig-zag paths, which have appeared in characterizing the toroidal dimers that lead to consistent SCFTs. The dessins are also related to Belyi pairs, consisting of a curve equipped with a map to P^1, branched over three points on the P^1. We construct explicit examples of Belyi pairs associated to some CFTs, including C^3 and the conifold. Permutation symmetries of the superpotential are related to the geometry of the Belyi pair. The Artin braid group action and a variation thereof play an interesting role. We make a conjecture relating the complex structure of the Belyi curve to R-charges in the conformal field theory.

  14. Categorical Pairs and the Indicative Shift

    CERN Document Server

    Kauffman, Louis H

    2011-01-01

    This paper introduces the notion of a categorical pair, a pair of categories (C,C') such that every morphism in C is an object in C'. Categorical pairs are precursors to 2-categories. Arrows in C' can express relationships among the morphisms of C. In particular we show that by using a model of the linguistic process of naming, we can ensure that every morphism in C has an indirect self-reference of the form a -----> Fa where this arrow occurs in the category C'. This result is shown to generalize and clarify known fixed point theorems in logic and categories, and is applied to Goedel's Incompleteness Theorem, the Cantor Diagonal Process and the Lawvere Fixed Point Theorem. In particular we show that the indirect self-reference that is central to Goedel's Theorem is an instance of a general pattern here called the indicative shift.

  15. An inverse problem for Schwinger pair production

    CERN Document Server

    Hebenstreit, Florian

    2016-01-01

    The production of electron-positron pairs in time-dependent electric fields (Schwinger mechanism) depends non-linearly on the applied field profile. Accordingly, the resulting momentum spectrum is extremely sensitive to small variations of the field parameters. Owing to this non-linear dependence it is so far unpredictable how to choose a field configuration such that a predetermined momentum distribution is generated. We show that quantum kinetic theory along with optimal control theory can be used to approximately solve this inverse problem for Schwinger pair production. We exemplify this by studying the superposition of a small number of harmonic components resulting in predetermined signatures in the asymptotic momentum spectrum. In the long run, our results could facilitate the observation of this yet unobserved pair production mechanism in quantum electrodynamics by providing suggestions for tailored field configurations.

  16. Pair production from an external electric field

    International Nuclear Information System (INIS)

    We solve numerically the problem of pair production from an external electric field in 1 + 1 dimensions including the quantum back-reaction from the produced pairs. We find that in the linear regime our numerical results agree perfectly with analytic calculations. In the strong field regime where tunnelling is uninhibited we determine the time it takes for the electric field to degrade due to energy transfer to the large number of pion field degrees of freedom. The problem has three time scales--the oscillation frequency of the charged quanta, the induced plasma oscillation frequency due to the production of pairs and finally the time scale for energy to be transferred from the electromagnetic field to the pion field. 4 refs., 5 figs

  17. Evidence for homosexuality gene

    Energy Technology Data Exchange (ETDEWEB)

    Pool, R.

    1993-07-16

    A genetic analysis of 40 pairs of homosexual brothers has uncovered a region on the X chromosome that appears to contain a gene or genes for homosexuality. When analyzing the pedigrees of homosexual males, the researcheres found evidence that the trait has a higher likelihood of being passed through maternal genes. This led them to search the X chromosome for genes predisposing to homosexuality. The researchers examined the X chromosomes of pairs of homosexual brothers for regions of DNA that most or all had in common. Of the 40 sets of brothers, 33 shared a set of five markers in the q28 region of the long arm of the X chromosome. The linkage has a LOD score of 4.0, which translates into a 99.5% certainty that there is a gene or genes in this area that predispose males to homosexuality. The chief researcher warns, however, that this one site cannot explain all instances of homosexuality, since there were some cases where the trait seemed to be passed paternally. And even among those brothers where there was no evidence that the trait was passed paternally, seven sets of brothers did not share the Xq28 markers. It seems likely that homosexuality arises from a variety of causes.

  18. Pairing and the Cooling of Neutron Stars

    CERN Document Server

    Page, Dany

    2012-01-01

    In this review, I present a brief summary of the impact of nucleon pairing at supra-nuclear densities on the cooling of neutron stars. I also describe how the recent observation of the cooling of the neutron star in the supernova remnant Cassiopeia A may provide us with the first direct evidence for the occurrence of such pairing. It also implies a size of the neutron 3P-F2 energy gap of the order of 0.1 MeV.

  19. On Thermal Comptonization in e+- Pair Plasmas

    OpenAIRE

    Ghisellini, Gabriele; Haardt, Francesco

    1994-01-01

    We study $e^{\\pm}$ pair plasmas in pair equilibrium, which emit high energy radiation by thermal Comptonization of soft photons. We find that the maximum luminosity to size ratio of the source (i.e. the compactness) depends not only on the hot plasma temperature, but also on the spectral index of the resulting Comptonized spectrum. In the observationally interesting range, sources of same compactness can be hotter if their spectrum is steeper. Instruments observing in the 50--500 keV energy r...

  20. The BCS Model for General Pair Interaction

    DEFF Research Database (Denmark)

    Hainzl, Christian; Hamza, Eman; Seiringer, Robert;

    2008-01-01

    The Bardeen-Cooper-Schrieffer (BCS) functional has recently received renewed attention as a description of fermionic gases interacting with local pairwise interactions. We present here a rigorous analysis of the BCS functional for general pair interaction potentials. For both zero and positive...... temperature, we show that the existence of a non-trivial solution of the nonlinear BCS gap equation is equivalent to the existence of a negative eigenvalue of a certain linear operator. From this we conclude the existence of a critical temperature below which the BCS pairing wave function does not vanish...

  1. Pairing Phase Transitions of Matter under Rotation

    CERN Document Server

    Jiang, Yin

    2016-01-01

    The phases and properties of matter under global rotation have attracted much interest recently. In this paper we investigate the pairing phenomena in a system of fermions under the presence of rotation. We find that there is a generic suppression effect on pairing states with zero angular momentum. We demonstrate this effect with the chiral condensation and the color superconductivity in hot dense QCD matter as explicit examples. In the case of chiral condensation, a new phase diagram in the temperature-rotation parameter space is found, with a nontrivial critical point.

  2. Non-locality of experimental qutrit pairs

    International Nuclear Information System (INIS)

    The insight due to John Bell that the joint behavior of individually measured entangled quantum systems cannot be explained by shared information remains a mystery to this day. We describe an experiment, and its analysis, displaying non-locality of entangled qutrit pairs. The non-locality of such systems, as compared to qubit pairs, is of particular interest since it potentially opens the door for tests of bipartite non-local behavior independent of probabilistic Bell inequalities, but of deterministic nature. This article is part of a special issue of Journal of Physics A: Mathematical and Theoretical devoted to ‘50 years of Bell’s theorem’. (paper)

  3. Pracovní spokojenost au-pair

    OpenAIRE

    Tomíšková, Tereza

    2013-01-01

    The topic of the following diploma thesis is the explanation of the concept of job satisfaction while holding an au-pair position. The aim of this thesis is to analyze the job satisfaction young women (or men), who go abroad to work as au-pair, can feel. The first part of the analysis consists in a theoretical assessment of the mentioned topic, that is to say provide the reader with basic terminology and information about this area of domestic work; we will also sketch out the main factors in...

  4. Pairing and realistic shell-model interactions

    OpenAIRE

    Covello, A; Gargano, A.; Kuo, T. T. S.

    2012-01-01

    This paper starts with a brief historical overview of pairing in nuclei, which fulfills the purpose of properly framing the main subject. This concerns the pairing properties of a realistic shell-model effective interaction which has proved very successful in describing nuclei around doubly magic 132Sn. We focus attention on the two nuclei 134Te and 134Sn with two valence protons and neutrons, respectively. Our study brings out the key role of one particle-one hole excitations in producing a ...

  5. Strategies for electron pair reconstruction in CBM

    International Nuclear Information System (INIS)

    Lepton pairs emitted out of the hot and dense stage of relativistic heavy ion collisions are established probes to study the electromagnetic structure of hadrons under extreme conditions. The reconstruction of low-mass vector mesons by means of their electromagnetic decay is one of the experimental goals of the planned compressed baryonic matter (CBM) experiment at the future facility FAIR. We present our strategies to reduce the combinatorial background in electron pair measurements in central Au+Au collisions at 25 AGeV with the CBM experimental setup. A special challenge of the current concept is the fact that electron identification is not provided in front of the magnetic field. (orig.)

  6. Pairing schemes for HFB calculations of nuclei

    CERN Document Server

    Duguet, T; Bonche, P

    2005-01-01

    Several pairing schemes currently used to describe superfluid nuclei through Hartree-Fock-Bogolyubov (HFB) calculations are briefly reviewed. We put a particular emphasis on the regularization recipes used in connection with zero-range forces and on the density dependence which usually complement their definition. Regarding the chosen regularization process, the goal is not only to identify the impact it may or may not have on pairing properties of nuclei through spherical 1D HFB calculations but also to assess its tractability for systematic axial 2D and 3D mean-field and beyond-mean-field calculations.

  7. Nilpotent orbits in real symmetric pairs

    CERN Document Server

    Dietrich, Heiko; Ruggeri, Daniele; Trigiante, Mario

    2016-01-01

    In the classification of stationary solutions in extended supergravities with symmetric scalar manifolds, the nilpotent orbits of a real symmetric pair play an important role. In this paper we discuss two approaches to determining the nilpotent orbits of a real symmetric pair. We apply our methods to an explicit example, and thereby classify the nilpotent orbits of SL_2(R)^4 acting on the fourth tensor power of the natural 2-dimensional SL_2(R)-module. This makes it possible to classify all stationary solutions of the so-called STU-supergravity model.

  8. Comment on ``Pairing interaction and Galilei invariance''

    Science.gov (United States)

    Arias, J. M.; Gallardo, M.; Gómez-Camacho, J.

    1999-05-01

    A recent article by Dussel, Sofia, and Tonina studies the relation between Galilei invariance and dipole energy weighted sum rule (EWSR). The authors find that the pairing interaction, which is neither Galilei nor Lorentz invariant, produces big changes in the EWSR and in effective masses of the nucleons. They argue that these effects of the pairing force could be realistic. In this Comment we stress the validity of Galilei invariance to a very good approximation in this context of low-energy nuclear physics and show that the effective masses and the observed change in the EWSR for the electric dipole operator relative to its classical value are compatible with this symmetry.

  9. Chemical Nonlinearities and Radical Pair Lifetime Estimation

    Science.gov (United States)

    Robinson, Gregory

    2013-03-01

    Much attention has recently developed around chemical reactions that depend on applied static magnetic fields as weak as earth's. This interest is largely motivated by experiments that implicate the role of spin-selective radical pair recombination in biological magnetic sensing. Existing literature uses a straightforward calculation to approximate the expected lifetime of coherent radical pairs as a function of the minimum RF amplitude that is observed to disrupt magnetic navigation, apparently by decohering the radical pair via electronic Zeeman excitations. But we show that chemical nonlinearities can preclude direct computation of coherent pair lifetime without considering the cellular signalling mechanisms involved, and discuss whether it can explain the surprising fragility of some animals' compass sense. In particular, we demonstrate that an autocatalytic cycle can introduce threshold effects on the disruption sensitivity to applied oscillatory magnetic fields. We will show examples in the mean-field limit and consider the consequences of noise and fluctuations in the Freidlin-Wentzell picture of perturbed dynamical systems.

  10. Pair Production in the Quantum Boltzmann Equation

    OpenAIRE

    Rau, Jochen

    1994-01-01

    A source term in the quantum Boltzmann equation, which accounts for the spontaneous creation of $e^+e^-$-pairs in external electric fields, is derived from first principles and evaluated numerically. Careful analysis of time scales reveals that this source term is generally non-Markovian. This implies in particular that there may be temporary violations of the $H$-theorem.

  11. Effective pair potentials for spherical nanoparticles

    International Nuclear Information System (INIS)

    An effective description for rigid spherical nanoparticles in a fluid of point particles is presented. The points inside the nanoparticles and the point particles are assumed to interact via spherically symmetric additive pair potentials, while the distribution of points inside the nanoparticles is taken to be spherically symmetric and smooth. The resulting effective pair interactions between a nanoparticle and a point particle, as well as between two nanoparticles, are then given by spherically symmetric potentials. If overlap between particles is allowed, as can occur for some forms of the pair potentials, the effective potential generally has non-analytic points. It is shown that for each effective potential the expressions for different overlapping cases can be written in terms of one analytic auxiliary potential. Even when only non-overlapping situations are possible, the auxiliary potentials facilitate the formulation of the effective potentials. Effective potentials for hollow nanoparticles (appropriate e.g. for buckyballs) are also considered and shown to be related to those for solid nanoparticles. For hollow nanoparticles overlap is more physical, since this covers the case of a smaller particle embedded in a larger, hollow nanoparticle. Finally, explicit expressions are given for the effective potentials derived from basic pair potentials of power law and exponential form, as well as from the commonly used London–van der Waals, Morse, Buckingham, and Lennard-Jones potentials. The applicability of the latter is demonstrated by comparison with an atomic description of nanoparticles with an internal face centered cubic structure

  12. Pair reversal in homogeneous isotropic turbulence

    International Nuclear Information System (INIS)

    We show that the separation of particle pairs in the inertial subrange of homogeneous isotropic turbulence is strongly influenced by the pairs that separate quasi-diffusively. We quantify the influence of the diffusive separators by considering the probability that a pair will 'reverse' direction across a given separation i.e. its separation will decrease (before eventually increasing) and derive an analytical expression for the expected number of reversals across this separation for a quasi-one-dimensional model of relative dispersion in the inertial subrange with Gaussian turbulence. We compare this theoretical result with three different Lagrangian stochastic models in which the influence of the diffusive and ballistic separators (the latter dominated by velocity memory) can be varied by means of the value of C0, the constant of proportionality in the Lagrangian velocity structure function, which appears explicitly in Lagrangian stochastic models. We also compare these results with data from a direct numerical simulation of turbulence. The results indicate the importance of the transverse relative velocity component (i.e. the ability of pairs to rotate), which is absent in Q1D models, in determining the correct quantitative relative dispersion statistics.

  13. On a direct superconducting pairing mechanism

    International Nuclear Information System (INIS)

    We suggest that superconductivity can be traced back to a first-order interaction between the charge carriers which does not necessarily involve second-order electron-phonon coupling. For small molecular model systems it is demonstrated that the formation of Cooper pairs can lead to an attenuation of the destabilizing influence of the Pauli antisymmetry principle (PAP). We suggest that this attenuation of a fermionic quantum constraint is the driving force for the superconducting transition. Whenever the PAP is activated in single-particle hoppings of electrons, the corresponding moves reduce the electronic delocalization; they raise the ensemble energy. The stability of a fermionic system is enhanced with decreasing influence of the PAP. Moves of Cooper pairs are not influenced by any quantum constraint of the intersite type. This behaviour differs from the well-known fermionic constraints. The quantum statistics of Cooper pairs is of a mixed type combining a fermionic on-site and a bosonic intersite behaviour. It coincides with the quantum statistics of so-called hard core bosonic ensembles. In the present work Cooper pair formation has been studied for smaller molecular models. The electronic Hamiltonian employed is of the two-parameter Hubbard-type. The solid state phenomenon superconductivity is correlated with the molecular concepts of ''antiaromaticity'' and ''aromaticity''. Arguments are given which support the present interpretation. (orig.)

  14. Abstract polymer models with general pair interactions

    CERN Document Server

    Procacci, Aldo

    2007-01-01

    A convergence criterion of cluster expansion is presented in the case of an abstract polymer system with general pair interactions (i.e. not necessarily hard core or repulsive). As a concrete example, the low temperature disordered phase of the BEG model with infinite range interactions, decaying polynomially as $1/r^{d+\\lambda}$ with $\\lambda>0$, is studied.

  15. A Novel Approach for Collaborative Pair Programming

    Science.gov (United States)

    Goel, Sanjay; Kathuria, Vanshi

    2010-01-01

    The majority of an engineer's time in the software industry is spent working with other programmers. Agile methods of software development like eXtreme Programming strongly rely upon practices like daily meetings and pair programming. Hence, the need to learn the skill of working collaboratively is of primary importance for software developers.…

  16. The mother of all pair potentials

    DEFF Research Database (Denmark)

    Dyre, J. C.; Bacher, Andreas Kvist

    2014-01-01

    This paper presents a computer simulation study of the exponentially repulsive pair potential system. The simulations show that the system has strong virial potential energy correlations in a large part of its thermodynamic phase diagram. Consequences of this are briefly discussed; these include ...

  17. Building a control sample for galaxy pairs

    CERN Document Server

    Perez, Josefa; Blaizot, Jeremy

    2009-01-01

    Several observational works have attempted to isolate the effects of galaxy interactions by comparing galaxies in pairs with isolated galaxies. However, different authors have proposed different ways to build these so-called control samples (CS). By using mock galaxy catalogues of the SDSS-DR4 built up from the Millennium Simulation, we explore how the way of building a CS might introduce biases which could affect the interpretation of results. We make use of the fact that the physics of interactions is not included in the semianalytic model, to infer that any difference between the mock control and pair samples can be ascribed to selection biases. Thus, we find that galaxies in pairs artificially tend to be older and more bulge-dominated, and to have less cold gas and different metallicities than their isolated counterparts. Also because of a biased selection, galaxies in pairs tend to live in higher density environments, and in haloes of larger masses. We find that imposing constraints on redshift, stellar ...

  18. Sfermion Pair Production at $\\mu^{+} \\mu^{-}$ Colliders

    CERN Document Server

    Bartl, Alfred; Kraml, Sabine; Majerotto, Walter; Porod, Werner

    1998-01-01

    We discuss pair production of stops, sbottoms, staus and tau--sneutrinos at a sections and perform a detailed numerical analysis within the Minimal Supersymmetric Standard Model. In particular, we consider sfermion production near $\\sqrt{s} = m_{H^0}$ and $\\sqrt{s} = m_{A^0}$.

  19. Dispersion Compensation with a Prism-pair

    CERN Document Server

    Shaked, Yaakov; Pe'er, Avi

    2014-01-01

    We present a detailed calculation of the total dispersion (spectral phase) from a pair of Brewster-cut prisms. This paper aims to aid advanced students in tracking the operation of this major configuration for dispersion-compensation and phase-control of ultra-short pulses.

  20. Virtual pair creation in nuclear Dirac phenomenology

    International Nuclear Information System (INIS)

    We discuss the importance of virtual nucleon-antinucleon pair (VP) creation in the scalar-vector model of nucleon-nucleus scattering. In a model based upon the Hartree approximation to nuclear matter, we find such VP terms to be crucial in order to reproduce the 'wine-bottle-bottom' shape of the real component of the optical potential. (orig.)

  1. Plasma analog of particle-pair production

    International Nuclear Information System (INIS)

    It is shown that the plasma axial shear flow instability satisfies the Klein-Gordon equation. The plasma instability is then shown to be analogous to spontaneous particle-pair production when a potential energy is present that is greater than twice the particle rest mass energy. Stability criteria can be inferred based on field theoretical conservation laws. (UK)

  2. Evacuation dynamics of asymmetrically coupled pedestrian pairs

    CERN Document Server

    Müller, Frank

    2016-01-01

    We propose and analyze extended floor field cellular automaton models for evacuation dynamics of inhomogeneous pedestrian pairs which are coupled by asymmetric group interactions. Such pairs consist of a leader, who mainly determines the couple's motion and a follower, who has a defined tendency to follow the leader. Examples for such pairs are mother and child or two siblings of different age. We examine the system properties and compare them to the case of a homogeneous crowd. We find a strong impact on evacuation times for the regime of strong pair coupling due to the occurrence of a clogging phenomenon. In addition we obtain a non-trivial dependence of evacuation times on the followers' coupling to the static floor field, which carries the information of the shortest way to the exit location. In particular we find that systems with fully passive followers, who are solely coupled to their leaders, show lower evacuation times than homogeneous systems where all pedestrians have an equal tendency to move towa...

  3. Retardation in the atomic pair polarizability

    NARCIS (Netherlands)

    M.A.J. Michels; L.G. Suttorp

    1977-01-01

    The atomic pair polarizability for hydrogen atoms is calculated within the framework of covariant quantum electrodynamics. Retardation effects are shown to change the dependence on the interatomic separation R from R/sup -6/ to R/sup -7/ for R large compared with a characteristic wavelength of the a

  4. The Lax pairs for the Holt system

    OpenAIRE

    Tsiganov, A. V.

    1998-01-01

    By using non-canonical transformation between the Holt system and the Henon-Heiles system the Lax pairs for all the integrable cases of the Holt system are constructed from the known Lax representations for the Henon-Heiles system.

  5. Near-Ring Radicals and Class Pairs

    Institute of Scientific and Technical Information of China (English)

    L.Godloza; N.J.Groenewald; W.A.Olivier

    2005-01-01

    For near-ring ideal mappings p1 and p2, we investigate radical theoretical properties of and the relationship among the class pairs (p1: p2), (Sp2: Sp1) and (Rp2:Rp1). Conditions on p1 and p2 are given for a general class pair to form a radical class of various types. These types include the Plotkin and KA-radical varieties. A number of examples are shown to motivate the suitability of the theory of Hoehnke-radicals over KA-radicals when radical pairs of near-rings are studied. In particular, it is shown that (pc: P3) forms a KA-radical class, where Pc denotes the class of completely prime nearrings and P3 the class of 3-prime near-rings. This gives another near-ring generalization of the 2-primal ring concept. The theory of radical pairs are also used to show that in general the class of 3-semiprime near-rings is not the semisimple class of the 3-prime radical.

  6. Distinguishing Z' models with polarised top pairs

    OpenAIRE

    Basso, L.; Mimasu, K.; Moretti, S.

    2012-01-01

    We study the sensitivity of top pair production at the Large Hadron Collider (LHC) to the nature of an underlying Z' boson, including full tree level standard model background effects and interferences. We demonstrate that exploiting combinations of asymmetry observables will enable one to distinguish between a selection of `benchmark' Z' models while assuming realistic final state reconstruction efficiencies and error estimates.

  7. Spectral Similarity of Unbound Asteroid Pairs

    CERN Document Server

    Wolters, Stephen D; Christou, Apostolis; Duddy, Samuel R; Lowry, Stephen C

    2014-01-01

    Infrared spectroscopy between 0.8 and 2.5 microns has been obtained for both components of three unbound asteroid pairs, using the NASA-IRTF with the SpeX instrument. Pair primary (2110) Moore-Sitterly is classified as an S-type following the Bus-DeMeo taxonomy; the classification for secondary (44612) 1999 RP27 is ambiguous: S/Sq/Q/K/L-type. Primary (10484) Hecht and secondary (44645) 1999 RC118 are classified as V-types. IR spectra for Moore-Sitterly and Hecht are each linked with available visual photometry. The classifications for primary (88604) 2001 QH293 and (60546) 2000 EE85 are ambiguous: S/Sq/Q/K/L-type. Subtle spectral differences between them suggest the primary may have more weathered material on its surface. Dynamical integrations have constrained the ages of formation: 2110-44612 > 782 kyr; 10484-44645 = 348 (+823,-225) kyr; 88604-60546 = 925 (+842,-754) kyr. The spectral similarity of seven complete pairs is ranked in comparison with nearby background asteroids. Two pairs, 17198-229056 and 192...

  8. Dopamine and opioid systems interact within the nucleus accumbens to maintain monogamous pair bonds

    Science.gov (United States)

    Resendez, Shanna L; Keyes, Piper C; Day, Jeremy J; Hambro, Caely; Austin, Curtis J; Maina, Francis K; Eidson, Lori N; Porter-Stransky, Kirsten A; Nevárez, Natalie; McLean, J William; Kuhnmuench, Morgan A; Murphy, Anne Z; Mathews, Tiffany A; Aragona, Brandon J

    2016-01-01

    Prairie vole breeder pairs form monogamous pair bonds, which are maintained through the expression of selective aggression toward novel conspecifics. Here, we utilize behavioral and anatomical techniques to extend the current understanding of neural mechanisms that mediate pair bond maintenance. For both sexes, we show that pair bonding up-regulates mRNA expression for genes encoding D1-like dopamine (DA) receptors and dynorphin as well as enhances stimulated DA release within the nucleus accumbens (NAc). We next show that D1-like receptor regulation of selective aggression is mediated through downstream activation of kappa-opioid receptors (KORs) and that activation of these receptors mediates social avoidance. Finally, we also identified sex-specific alterations in KOR binding density within the NAc shell of paired males and demonstrate that this alteration contributes to the neuroprotective effect of pair bonding against drug reward. Together, these findings suggest motivational and valence processing systems interact to mediate the maintenance of social bonds. DOI: http://dx.doi.org/10.7554/eLife.15325.001 PMID:27371827

  9. Conditional targeting of Ispd using paired Cas9 nickase and a single DNA template in mice

    OpenAIRE

    Angus Yiu-fai Lee; Kevin C. Kent Lloyd

    2014-01-01

    CRISPR/Cas9 technology is a highly promising genome editing tool in the mouse, potentially overcoming the costs and time required for more traditional gene targeting methods in embryonic stem (ES) cells. Recently, compared to the wildtype nuclease, paired Cas9 nickase (Cas9n) combined with single guide RNA (sgRNA) molecules has been found to enhance the specificity of genome editing while reducing off-target effects. Paired Cas9n has been shown to be as efficient as Cas9 for generating insert...

  10. Modelling of top quark pairs production in association with Standard Model bosons or heavy quark pairs.

    CERN Document Server

    Moreno Llacer, Maria; The ATLAS collaboration

    2016-01-01

    Production of top quark pairs in association with heavy Standard Model bosons or with heavy flavour quark-pairs is important both as a signal and a background in several ATLAS analyses. Strong constraints on such processes cannot at present be obtained from data, and therefore their modeling by Monte Carlo simulation as well as the associated uncertainties are important. This poster documents the Monte Carlo samples currently being used in ATLAS for the ttH and ttV (V=W,Z vector bosons) and tt+bottom and charm quark pairs processes for sqrt(s)=13 TeV proton-proton collisions.

  11. Neutron pair and proton pair transfer reactions between identical cores in the sulfur region

    International Nuclear Information System (INIS)

    Optical model and exact finite range distorted-wave Born approximation analyses were performed on neutron pair exchange between identical cores for 32S and 34S nuclei and on proton pair exchange between identical cores for 30Si and 32S. The extracted spectroscopic factors were compared with theoretical ones deduced from Hartree-Fock calculations on these pair of nuclei. The enhancement of the experimental cross sections with respect to the theoretical ones strongly suggests evidence for a nuclear Josephson effect. (author). 15 refs., 5 figs., 3 tabs

  12. Estimation of the Conditional Variance in Paired Experiments

    OpenAIRE

    Abadie, Alberto; Guido W. IMBENS

    2008-01-01

    In paired randomized experiments units are grouped in pairs, often based on covariate information, with random assignment within the pairs. Average treatment effects are then estimated by averaging the within-pair differences in outcomes. Typically the variance of the average treatment effect estimator is estimated using the sample variance of the within-pair differences. However, conditional on the covariates the variance of the average treatment effect estimator may be substantially smaller...

  13. Na+ Cl- ion pair association in water-DMSO mixtures: Effect of ion pair model potentials

    Indian Academy of Sciences (India)

    ATANU SARKAR; ANUPAM CHATTERJEE; S C TIWARI; B L TEMBE

    2016-06-01

    Potentials of Mean Force (PMF) for the Na+ Cl- ion pair in water–dimethyl sulfoxide (DMSO)mixtures for three DMSO mole fractions have been computed using constrained Molecular Dynamics (MD)simulations and confirmed by dynamical trajectories and residence times of the ion pair at various inter-ionicseparations. The three ion-ion direct potentials used are 12-6-1, exp-6-1 and exp-8-6-1. The physical picturethat emerges is that there is a strong contact ion pair (CIP) and strong to moderate solvent separated ion pair(SSIP) in these solutions. Analysis of local ion clusters shows that ions are dominantly solvated by watermolecules. The 12-6-1 potential model predicts running coordination numbers closest to experimental data.

  14. Pairing and anti-pairing: a balancing act in the diploid genome

    Science.gov (United States)

    Joyce, Eric F.; Erceg, Jelena; Wu, C.-ting

    2016-01-01

    The presence of maternal and paternal homologs appears to be much more than just a doubling of genetic material. We know this because genomes have evolved elaborate mechanisms that permit homologous regions to sense and then respond to each other. One way in which homologs communicate is to come into contact and, in fact, Dipteran insects such as Drosophila excel at this task, aligning all pairs of maternal and paternal chromosomes, end-to-end, in essentially all somatic tissues throughout development. Here, we reexamine the widely held tenet that extensive somatic pairing of homologous sequences cannot occur in mammals and suggest, instead, that pairing may be a widespread and significant potential that has gone unnoticed in mammals because they expend considerable effort to prevent it. We then extend this discussion to interchromosomal interactions, in general, and speculate about the potential of nuclear organization and pairing to impact inheritance. PMID:27065367

  15. General pairing interactions and pair truncation approximations for fermions in a single-j shell

    CERN Document Server

    Zhao, Y M; Ginocchio, J N; Yoshinaga, N

    2003-01-01

    We investigate Hamiltonians with attractive interactions between pairs of fermions coupled to angular momentum J. We show that pairs with spin J are reasonable building blocks for the low-lying states. For systems with only a J = Jmax pairing interaction, eigenvalues are found to be approximately integers for a large array of states, in particular for those with total angular momenta I le 2j. For I=0 eigenstates of four fermions in a single-j shell we show that there is only one non-zero eigenvalue. We address these observations using the nucleon pair approximation of the shell model and relate our results with a number of currently interesting problems.

  16. Resonant Repulsion of Kepler Planet Pairs

    CERN Document Server

    Lithwick, Yoram

    2012-01-01

    Planetary systems discovered by the Kepler space telescope exhibit an intriguing feature. While the period ratios of adjacent low-mass planets appear largely random, there is a significant excess of pairs that lie just wide of resonances and a deficit on the near side. We demonstrate that this feature naturally arises when two near-resonant planets interact in the presence of weak dissipation that damps eccentricities. The two planets repel each other as orbital energy is lost to heat. This moves near-resonant pairs just beyond resonance, by a distance that reflects the integrated dissipation they experienced over their lifetimes. We find that the observed distances may be explained by tidal dissipation if tides are efficient (tidal quality factor ~10). Once the effect of resonant repulsion is accounted for, the initial orbits of these low mass planets show little preference for resonances. This is a strong constraint on their origin.

  17. Schwinger pair production with ultracold atoms

    Science.gov (United States)

    Kasper, V.; Hebenstreit, F.; Oberthaler, M. K.; Berges, J.

    2016-09-01

    We consider a system of ultracold atoms in an optical lattice as a quantum simulator for electron-positron pair production in quantum electrodynamics (QED). For a setup in one spatial dimension, we investigate the nonequilibrium phenomenon of pair production including the backreaction leading to plasma oscillations. Unlike previous investigations on quantum link models, we focus on the infinite-dimensional Hilbert space of QED and show that it may be well approximated by experiments employing Bose-Einstein condensates interacting with fermionic atoms. Numerical calculations based on functional integral techniques give a unique access to the physical parameters required to realize QED phenomena in a cold atom experiment. In particular, we use our approach to consider quantum link models in a yet unexplored parameter regime and give bounds for their ability to capture essential features of the physics. The results suggest a paradigmatic change towards realizations using coherent many-body states for quantum simulations of high-energy particle physics phenomena.

  18. Top pair production measurements at ATLAS.

    CERN Document Server

    Fabbri, Federica; The ATLAS collaboration

    2016-01-01

    Measurements of the inclusive and differential top-quark pair cross sections in proton-proton collisions at both 8 TeV and 13 TeV with the ATLAS detector at the Large Hadron Collider are presented. The inclusive measurements reach high precision and are compared to the best available theoretical calculations. Differential measurements of the kinematic properties of the top quark production are also discussed. These measurements, including results using boosted tops, probe our understanding of top pair production in the TeV regime. The results, extrapolated to particle and parton level, are compared to Monte Carlo generators implementing LO and NLO matrix elements matched with parton showers and NNLO QCD calculations.

  19. Dual Resolution Images from Paired Fingerprint Cards

    Science.gov (United States)

    NIST Dual Resolution Images from Paired Fingerprint Cards (PC database for purchase)   NIST Special Database 30 is being distributed for use in development and testing of fingerprint compression and fingerprint matching systems. The database allows the user to develop and evaluate data compression algorithms for fingerprint images scanned at both 19.7 ppmm (500 dpi) and 39.4 ppmm (1000 dpi). The data consist of 36 ten-print paired cards with both the rolled and plain images scanned at 19.7 and 39.4 pixels per mm. A newer version of the compression/decompression software on the CDROM can be found at the website http://www.nist.gov/itl/iad/ig/nigos.cfm as part of the NBIS package.

  20. Instantons For Black Hole Pair Production

    CERN Document Server

    Branoff, P M; Branoff, Paul M.; Brill, Dieter R.

    1998-01-01

    We address the issue of constructing continuous instantons representing the pair creation of black holes in a cosmological context. The recent attempt at constructing such solutions using virtual domain walls is reviewed first. We then explore the existence of continuous instantons in higher curvature gravity theories where the Lagrangian is polynomial in the Ricci scalar. Lastly, we study continuous instanton solutions of ordinary gravity coupled to the Narlikar C-field. For each theory, we first consider the case of finding continuous instanton solutions which represent the "near-annihilation" of a de Sitter universe and its subsequent recreation. In situations where these solutions exist, we then ask whether solutions can be found that represent the "near-annihilation" of a de Sitter spacetime and the subsequent creation of a pair of Schwarzschild-de Sitter black holes.

  1. A search for resonant Z pair production

    Energy Technology Data Exchange (ETDEWEB)

    Boveia, Antonio; /UC, Santa Barbara

    2008-12-01

    I describe a search for anomalous production of Z pairs through a new massive resonance X in 2.5-2.9 fb{sup -1} of p{bar p} collisions at {radical}s = 1.96 TeV using the CDFII Detector at the Fermilab Tevatron. I reconstruct Z pairs through their decays to electrons, muons, and quarks. To achieve perhaps the most efficient lepton reconstruction ever used at CDF, I apply a thorough understanding of the detector and new reconstruction software heavily revised for this purpose. In particular, I have designed and employ new general-purpose algorithms for tracking at large {eta} in order to increase muon acceptance. Upon analyzing the unblinded signal samples, I observe no X {yields} ZZ candidates and set upper limits on the production cross section using a Kaluza-Klein graviton-like acceptance.

  2. Top Quark Pair Production beyond NNLO

    CERN Document Server

    Muselli, Claudio; Forte, Stefano; Marzani, Simone; Ridolfi, Giovanni

    2015-01-01

    We construct an approximate expression for the total cross section for the production of a heavy quark-antiquark pair in hadronic collisions at next-to-next-to-next-to-leading order (N$^3$LO) in $\\alpha_s$. We use a technique which exploits the analyticity of the Mellin space cross section, and the information on its singularity structure coming from large N (soft gluon, Sudakov) and small N (high energy, BFKL) all order resummations, previously introduced and used in the case of Higgs production. We validate our method by comparing to available exact results up to NNLO. We find that N$^3$LO corrections increase the predicted top pair cross section at the LHC by about 4% over the NNLO.

  3. Extra-pair paternity in waved albatrosses.

    Science.gov (United States)

    Huyvaert, K P; Anderson, D J; Jones, T C; Duan, W; Parker, P G

    2000-09-01

    We estimated the rate of extra-pair fertilizations (EPFs) in waved albatrosses (Phoebastria irrorata) on Isla Española, Galápagos, Ecuador, using multilocus minisatellite DNA fingerprinting. Waved albatrosses are socially monogamous, long-lived seabirds whose main population is on Española. Aggressive extra-pair copulation (EPC) attempts have been observed in the breeding colony during the days preceding egg-laying. Our genetic analyses of 16 families (single chicks and their attending parents) revealed evidence of EPFs in four families. In all cases males were the excluded parent. These data suggest that waved albatrosses have an unusually high rate of EPF relative to taxa with similar life histories. Future behavioural observations will determine the extent to which forced vs. unforced EPCs contribute to this high EPF rate. PMID:10972780

  4. Turbulent pair dispersion of inertial particles

    CERN Document Server

    Bec, J; Lanotte, A S; Scagliarini, A; Toschi, F

    2009-01-01

    The relative dispersion of pairs of inertial particles in incompressible, homogeneous, and isotropic turbulence is studied by means of direct numerical simulations at two values of the Taylor-scale Reynolds number $Re_{\\lambda} \\sim 200$ and 400. The evolution of both heavy and light particle pairs is analysed at varying the particle Stokes number and the fluid-to-particle density ratio. For heavy particles, it is found that turbulent dispersion is schematically governed by two temporal regimes. The first is dominated by the presence, at large Stokes numbers, of small-scale caustics in the particle velocity statistics, and it lasts until heavy particle velocities have relaxed towards the underlying flow velocities. At such large scales, a second regime starts where heavy particles separate as tracers particles would do. As a consequence, at increasing inertia, a larger transient stage is observed, and the Richardson diffusion of simple tracers is recovered only at large times and large scales. These features ...

  5. Average prime-pair counting formula

    Science.gov (United States)

    Korevaar, Jaap; Riele, Herman Te

    2010-04-01

    Taking r>0 , let π_{2r}(x) denote the number of prime pairs (p, p+2r) with p≤ x . The prime-pair conjecture of Hardy and Littlewood (1923) asserts that π_{2r}(x)˜ 2C_{2r} {li}_2(x) with an explicit constant C_{2r}>0 . There seems to be no good conjecture for the remainders ω_{2r}(x)=π_{2r}(x)- 2C_{2r} {li}_2(x) that corresponds to Riemann's formula for π(x)-{li}(x) . However, there is a heuristic approximate formula for averages of the remainders ω_{2r}(x) which is supported by numerical results.

  6. REX: Explaining Relationships between Entity Pairs

    CERN Document Server

    Fang, Lujun; Yu, Cong; Bohannon, Philip

    2011-01-01

    Knowledge bases of entities and relations (either constructed manually or automatically) are behind many real world search engines, including those at Yahoo!, Microsoft, and Google. Those knowledge bases can be viewed as graphs with nodes representing entities and edges representing (primary) relationships, and various studies have been conducted on how to leverage them to answer entity seeking queries. Meanwhile, in a complementary direction, analyses over the query logs have enabled researchers to identify entity pairs that are statistically correlated. Such entity relationships are then presented to search users through the "related searches" feature in modern search engines. However, entity relationships thus discovered can often be "puzzling" to the users because why the entities are connected is often indescribable. In this paper, we propose a novel problem called "entity relationship explanation", which seeks to explain why a pair of entities are connected, and solve this challenging problem by integra...

  7. Paired de Bruijn Graphs: A Novel Approach for Incorporating Mate Pair Information into Genome Assemblers

    OpenAIRE

    Medvedev, Paul; Pham, Son; Chaisson, Mark; Tesler, Glenn; Pevzner, Pavel

    2011-01-01

    The recent proliferation of next generation sequencing with short reads has enabled many new experimental opportunities but, at the same time, has raised formidable computational challenges in genome assembly. One of the key advances that has led to an improvement in contig lengths has been mate pairs, which facilitate the assembly of repeating regions. Mate pairs have been algorithmically incorporated into most next generation assemblers as various heuristic post-processing steps to correct ...

  8. Strong pairing approximation in comparison with the exact solutions to the pairing Hamiltonian

    Science.gov (United States)

    Lunyov, A. V.; Mikhajlov, V. M.

    2016-01-01

    Results of the Strong Pairing Approximation (SPA) as a method with the exact particle number conservation are compared with those of the quasiparticle method (QM). It is shown that SPA comes to the same equations as QM for the gap parameter, chemical potential and one- and two-quasiparticle states. Calculations are performed for 14864Gd84 as an example, and compared with the exact solutions to the pairing Hamiltonian.

  9. Radio structures in QSO-galaxy pairs

    International Nuclear Information System (INIS)

    It is now generally agreed that if quasars and nearby low redshift galaxies are associated, then there should be luminous connections between them. However, most of the observational evidence being presented is in the optical domain, whereas such evidence should also exist at radio frequencies. The author is, therefore, investigating some quasar-galaxy pairs at radio frequencies to search for luminous connections and other structural peculiarities. Radio maps of some of these sources are presented

  10. Paired structures and bipolar knowledge representation

    OpenAIRE

    Montero, Javier; Bustince, H.; Franco, C.; Rodríguez, Juan Tinguaro; Gómez, Daniel; Pagola, Miguel; Fernandez, Javier; Barrenechea, Edurne

    2014-01-01

    In this strictly positional paper we propose a general approach to bipolar knowledge representation, where the meaning of concepts can be modelled by examining their decomposition into opposite and neutral categories. In particular, it is the semantic relationship between the opposite categories which suggests the emergence of a paired structure and its associated type of neutrality, being there three general types of neutral categories, namely indeterminacy, ambivalence and conflict. Hence, ...

  11. Asteroid Systems: Binaries, Triples, and Pairs

    CERN Document Server

    Margot, Jean-Luc; Taylor, Patrick; Carry, Benoît; Jacobson, Seth

    2015-01-01

    In the past decade, the number of known binary near-Earth asteroids has more than quadrupled and the number of known large main belt asteroids with satellites has doubled. Half a dozen triple asteroids have been discovered, and the previously unrecognized populations of asteroid pairs and small main belt binaries have been identified. The current observational evidence confirms that small (20 km) binaries with small satellites are most likely created during large collisions.

  12. Narrowband polarization entangled telecom photon pair source

    OpenAIRE

    Kaiser, Florian; Issautier, Amandine; Alibart, Olivier; Martin, Anthony; Tanzilli, Sébastien

    2011-01-01

    During the last decade, quantum entanglement has paved the way out to of the lab modern applications such as quantum computation and communication. Today, small scale quantum networks exist already, but they are limited to a few 100 km distance, due to intrinsic fiber transmission losses and non perfect detectors. These networks are typically established using photon pair sources based on spontaneous parametric down conversion (SPDC). Widely used entanglement observables are time-bin and pola...

  13. Pair Correlations in Superfluid Helium 3

    OpenAIRE

    Vollhardt, D.

    1997-01-01

    In 1996 Lee, Osheroff and Richardson received the Nobel Prize for their 1971 discovery of superfluid helium 3 -- a discovery which opened the door to the most fascinating system known in condensed matter physics. The superfluid phases of helium 3, originating from pair condensation of helium 3 atoms, turned out to be the ideal test-system for many fundamental concepts of modern physics, such as macroscopic quantum phenomena, (gauge-)symmetries and their spontaneous breakdown, topological defe...

  14. Temporal dependence in longitudinal paired comparisons

    OpenAIRE

    Dittrich, Regina; Francis, Brian; Katzenbeisser, Walter

    2008-01-01

    This paper develops a new approach to the analysis of longitudinal paired comparison data, where comparisons of the same objects by the same judges are made on more than one occasion. As an alternative to other recent approaches to such data, which are based on Kalman filter- ing, our approach treats the problem as one of multivariate multinomial data, allowing dependence terms between comparisons over time to be incorporated. The resulting model can be fitted as a Poisson log-linear model an...

  15. Bjerrum pairing correlations at charged interfaces

    OpenAIRE

    Travesset, A.; Vaknin, D.

    2006-01-01

    Electrostatic correlations play a fundamental role in aqueous solutions. In this letter, we identify transverse and lateral correlations as two mutually exclusive regimes. We show that the transverse regime leads to binding by generalization of Bjerrum pair formation theory, yielding binding constants from first-principle statistical-mechanical calculations. We compare our theoretical predictions with experiments on charged membranes and Langmuir monolayers and find good agreement. We contras...

  16. W+- pairs and neutral currents at ISABELLE

    International Nuclear Information System (INIS)

    A report is presented on two different types of processes which may form part of the weak interactions program. The first is the production of pairs of charged weak bosons in the process pp → W+W-X; the second involves searching for neutral current effects in the rate for ordinary lepton production, without measuring any charge asymmetry or helicities using the reaction pp → l+l-X

  17. Quantum Computation by Pairing Trapped Ultracold Ions

    Institute of Scientific and Technical Information of China (English)

    冯芒; 朱熙文; 高克林; 施磊

    2001-01-01

    Superpositional wavefunction oscillations for the implementation of quantum algorithms modify the desired interference required for the quantum computation. We propose a scheme with trapped ultracold ion-pairs beingqubits to diminish the detrimental effect of the wavefunction oscillations, which is applied to the two-qubitGrover's search. It can be also found that the qubits in our scheme are more robust against the decoherencecaused by the environment, and the model is scalable.

  18. Transgenic Arabidopsis Gene Expression System

    Science.gov (United States)

    Ferl, Robert; Paul, Anna-Lisa

    2009-01-01

    The Transgenic Arabidopsis Gene Expression System (TAGES) investigation is one in a pair of investigations that use the Advanced Biological Research System (ABRS) facility. TAGES uses Arabidopsis thaliana, thale cress, with sensor promoter-reporter gene constructs that render the plants as biomonitors (an organism used to determine the quality of the surrounding environment) of their environment using real-time nondestructive Green Fluorescent Protein (GFP) imagery and traditional postflight analyses.

  19. Banach Algebras Associated to Lax Pairs

    Science.gov (United States)

    Glazebrook, James F.

    2015-04-01

    Lax pairs featuring in the theory of integrable systems are known to be constructed from a commutative algebra of formal pseudodifferential operators known as the Burchnall- Chaundy algebra. Such pairs induce the well known KP flows on a restricted infinite-dimensional Grassmannian. The latter can be exhibited as a Banach homogeneous space constructed from a Banach *-algebra. It is shown that this commutative algebra of operators generating Lax pairs can be associated with a commutative C*-subalgebra in the C*-norm completion of the *-algebra. In relationship to the Bose-Fermi correspondence and the theory of vertex operators, this C*-algebra has an association with the CAR algebra of operators as represented on Fermionic Fock space by the Gelfand-Naimark-Segal construction. Instrumental is the Plücker embedding of the restricted Grassmannian into the projective space of the associated Hilbert space. The related Baker and tau-functions provide a connection between these two C*-algebras, following which their respective state spaces and Jordan-Lie-Banach algebras structures can be compared.

  20. Chiral baryon in the coherent pair approximation

    CERN Document Server

    Aly, T S T

    1999-01-01

    We revisit the work of K. Goeke, M. Harvey, F. Grümmer, and J. N. Urbano (Phys. Rev. {\\bf D37}, 754 (1988)) who considered a chiral model for the nucleon based on the linear sigma model with scalar-isoscalar scalar-isovector mesons coupled to quarks and solved using the coherent-pair approximation. In this way the quantum pion field can be treated in a non-perturbative fashion. In this work we review this model and the coherent pair approximation correcting several errors in the earlier work. We minimize the expectation value of the chiral hamiltonian in the ansatz coherent-pair ground state configuration and solve the resulting equations for nucleon quantum numbers. We calculate the canonical set of nucleon observables and compare with the Hedgehog model and experiment. Using the corrected equations yield slightly different values for nucleon observables but do not correct the large virial deviation in the $\\pi$-nucleon coupling. Our results therefore do not significantly alter the conclusions of Goeke, et ...

  1. Population of the giant pairing vibration

    Science.gov (United States)

    Laskin, M.; Casten, R. F.; Macchiavelli, A. O.; Clark, R. M.; Bucurescu, D.

    2016-03-01

    Background: The giant pairing vibration (GPV), a correlated two-nucleon mode in the second shell above the Fermi surface, has long been predicted and expected to be strongly populated in two-nucleon transfer cross sections similar to those of the normal pairing vibration. Recent experiments have provided evidence for this mode in ,15C14 but, despite sensitive studies, it has not been definitively identified in either Sn or Pb nuclei where pairing correlations are known to play a crucial role. Purpose: Our aim is to test whether features inherent to the mixing of bound and unbound levels might account for this and to study the effect in a simple and intuitively clear approach. Method: We study the mixing of unbound levels in a set of toy models that capture the essential physics of the GPV, along with a more realistic calculation including distorted-wave Born approximation transfer amplitudes. Results: The calculated (relative) cross section to populate a simulated GPV state is effectively low, compared to the case of bound levels with no widths Conclusions: The mixing turns out to be only a minor contributor to the weak population. Rather, the main reason is the melting of the GPV peak due to the width it acquires from the low orbital angular momentum single-particle states playing a dominant role in two-nucleon transfer amplitudes. This effect, in addition to a severe Q -value mismatch, may account for the elusive nature of this mode in (t ,p ) and (p ,t ) reactions.

  2. Photoinduced Charge Separation in Porphyrin Ion Pairs.

    Science.gov (United States)

    Natali, Mirco; Scandola, Franco

    2016-03-10

    Ion pairs between porphyrin-type compounds have been successfully employed for spectral sensitization of semiconductor surfaces and for the preparation of collective binary ionic materials for photonic and (photo)catalytic applications. The understanding of the photophysical processes occurring within ion-paired porphyrin dimers is thus of remarkable importance for the optimization and improvement of such systems. Herein the ion-pair species formed between ZnTMePyP(4+) (Zn1) or H2TMePyP(4+) (H21) and ZnTPPS(4-) (Zn2) or H2TPPS(4-) (H22) in a variety of solvent mixtures are characterized and their photophysics thoroughly investigated by time-resolved techniques. In all the systems studied, very fast and efficient photoinduced charge separation is observed, with the cationic porphyrin being reduced and the anionic one oxidized. Interestingly, despite the very short charge separation distance, the lifetime for charge recombination, depending on the energy gap, can extend into the nanosecond time domain, showing great potential for the utilization of this molecular design within energy conversion schemes. PMID:26905260

  3. Grandmothering life histories and human pair bonding.

    Science.gov (United States)

    Coxworth, James E; Kim, Peter S; McQueen, John S; Hawkes, Kristen

    2015-09-22

    The evolution of distinctively human life history and social organization is generally attributed to paternal provisioning based on pair bonds. Here we develop an alternative argument that connects the evolution of human pair bonds to the male-biased mating sex ratios that accompanied the evolution of human life history. We simulate an agent-based model of the grandmother hypothesis, compare simulated sex ratios to data on great apes and human hunter-gatherers, and note associations between a preponderance of males and mate guarding across taxa. Then we explore a recent model that highlights the importance of mating sex ratios for differences between birds and mammals and conclude that lessons for human evolution cannot ignore mammalian reproductive constraints. In contradiction to our claim that male-biased sex ratios are characteristically human, female-biased ratios are reported in some populations. We consider the likelihood that fertile men are undercounted and conclude that the mate-guarding hypothesis for human pair bonds gains strength from explicit links with our grandmothering life history. PMID:26351687

  4. Tree structure compression with RePair

    CERN Document Server

    Lohrey, Markus; Mennicke, Roy

    2010-01-01

    In this work we introduce a new linear time compression algorithm, called "Re-pair for Trees", which compresses ranked ordered trees using linear straight-line context-free tree grammars. Such grammars generalize straight-line context-free string grammars and allow basic tree operations, like traversal along edges, to be executed without prior decompression. Our algorithm can be considered as a generalization of the "Re-pair" algorithm developed by N. Jesper Larsson and Alistair Moffat in 2000. The latter algorithm is a dictionary-based compression algorithm for strings. We also introduce a succinct coding which is specialized in further compressing the grammars generated by our algorithm. This is accomplished without loosing the ability do directly execute queries on this compressed representation of the input tree. Finally, we compare the grammars and output files generated by a prototype of the Re-pair for Trees algorithm with those of similar compression algorithms. The obtained results show that that our...

  5. Exclusive production of W pairs in CMS

    Directory of Open Access Journals (Sweden)

    Silveira Da

    2014-04-01

    Full Text Available We report the results on the search for exclusive production of W pairs in the LHC with data collected by the Compact Muon Solenoid detector in proton-proton collisions at √s = 7 TeV. The analysis comprises the two-photon production of a W pairs, pp → pW+ W− p → p νe± νµ∓ p. Two events are observed in data for pT(ℓ > 4 GeV, |η(ℓ| 20 GeV, in agreement with the standard model prediction of 2.2 ± 0.4 signal events with 0.84 ± 0.15 background events. Moreover, a study of the tail of the lepton pair transverse momentum distribution is performed to search for an evidence of anomalous quartic gauge couplings in the γγ → W+ W− vertex. As no events are observed in data, it results in a model-independent upper limits for the anomalous W quartic gauge couplings aW0,C/Λ2, which are of the order of 10−4.

  6. The paired-domination and the upper paired-domination numbers of graphs

    Directory of Open Access Journals (Sweden)

    Włodzimierz Ulatowski

    2015-01-01

    Full Text Available In this paper we continue the study of paired-domination in graphs. A paired-dominating set, abbreviated PDS, of a graph \\(G\\ with no isolated vertex is a dominating set of vertices whose induced subgraph has a perfect matching. The paired-domination number of \\(G\\, denoted by \\(\\gamma_{p}(G\\, is the minimum cardinality of a PDS of \\(G\\. The upper paired-domination number of \\(G\\, denoted by \\(\\Gamma_{p}(G\\, is the maximum cardinality of a minimal PDS of \\(G\\. Let \\(G\\ be a connected graph of order \\(n\\geq 3\\. Haynes and Slater in [Paired-domination in graphs, Networks 32 (1998, 199-206], showed that \\(\\gamma_{p}(G\\leq n-1\\ and they determine the extremal graphs \\(G\\ achieving this bound. In this paper we obtain analogous results for \\(\\Gamma_{p}(G\\. Dorbec, Henning and McCoy in [Upper total domination versus upper paired-domination, Questiones Mathematicae 30 (2007, 1-12] determine \\(\\Gamma_{p}(P_n\\, instead in this paper we determine \\(\\Gamma_{p}(C_n\\. Moreover, we describe some families of graphs \\(G\\ for which the equality \\(\\gamma_{p}(G=\\Gamma_{p}(G\\ holds.

  7. Isolated Main Galaxy Pairs from the SDSS Data Release 4

    Institute of Scientific and Technical Information of China (English)

    Xin-Fa Deng; Yi-Qing Chen; Ping Wu; Cheng-Hong Luo; Ji-Zhou He

    2006-01-01

    From the Main galaxy data of the SDSS Data Release 4 (SDSS4), we have identified close galaxy pairs at neighbourhood radius R = 100 kpc by three-dimensional cluster analysis. Using the criterion that an "isolated galaxy pair" must be separated from its "nearest neighbor" by more than 500 kpc, we constructed an isolated galaxy pair sample of 1158 pairs.We also constructed a random pair sample by randomly selecting 1158 galaxy pairs from the Main galaxy sample, which has the same redshift distribution as the isolated galaxy pair sample, and in which the two components of any pair have the same redshifts. Comparative studies of luminosity and size between the members of the galaxy pairs are performed. We find and further confirm there is no tendency for paired galaxies to have similar luminosities or sizes. From the isolated pair sample we also selected a subsample with the magnitude limit of the primary raised by 2 magnitudes, so as to include pairs in which the secondary is 2 magnitudes fainter than the primary. This subsample contains 82 pairs. A random pair sample is similarly constructed.

  8. From one to N Cooper pairs, step by step

    International Nuclear Information System (INIS)

    We suggest a method for the analytical solution of Richardson equations. We reveal a connection between one-pair Cooper problem and BCS superconductivity. The ground state energy is controlled by binding energy of a Cooper pair. The superconducting gap is due to many-body effects induced by Pauli blocking. We extend the one-pair Cooper configuration towards Bardeen-Cooper-Schrieffer (BCS) model of superconductivity by adding one-by-one electron pairs to an energy layer, where a small attraction acts. To do it, we solve Richardson's equations analytically in the dilute limit of pairs on the one-Cooper pair scale. We find, through only keeping the first order term in this expansion, that the N correlated pair energy reads as the energy of N isolated pairs within a N(N-1) correction induced by the Pauli exclusion principle which tends to decrease the average pair binding energy when the pair number increases. Quite remarkably, extension of this first-order result to the dense regime gives the BCS condensation energy exactly. This leads us to suggest a different understanding of the BCS condensation energy with a pair number equal to the number of pairs feeling the potential and an average pair binding energy reduced by Pauli blocking to half the single Cooper pair energy - instead of the more standard but far larger superconducting gap.

  9. A genome-wide association study of monozygotic twin-pairs suggests a locus related to variability of serum high-density lipoprotein cholesterol

    DEFF Research Database (Denmark)

    Surakka, Ida; Whitfield, John B; Perola, Markus; Visscher, Peter M; Montgomery, Grant W; Falchi, Mario; Willemsen, Gonneke; de Geus, Eco J C; Magnusson, Patrik K E; Christensen, Kaare; Sørensen, Thorkild I A; Pietiläinen, Kirsi H; Rantanen, Taina; Silander, Kaisa; Widén, Elisabeth; Muilu, Juha; Rahman, Iffat; Liljedahl, Ulrika; Syvänen, Ann-Christine; Palotie, Aarno; Kaprio, Jaakko; Kyvik, Kirsten Ohm; Pedersen, Nancy L; Boomsma, Dorret I; Spector, Tim; Martin, Nicholas G; Ripatti, Samuli; Peltonen, Leena

    2012-01-01

    in serum lipid and apolipoprotein levels. We report data for 1,720 monozygotic female twin-pairs from GenomEUtwin project with 2.5 million SNPs, imputed or genotyped, and measured serum lipid fractions for both twins. We found one locus associated with intra-pair differences in high......Genome-wide association analysis on monozygotic twin-pairs offers a route to discovery of gene environment interactions through testing for variability loci associated with sensitivity to individual environment/lifestyle. We present a genome-wide scan of loci associated with intra-pair differences...

  10. Gene regulatory mechanisms in infected fish

    DEFF Research Database (Denmark)

    Schyth, Brian Dall; Hajiabadi, Seyed Amir Hossein Jalali; Kristensen, Lasse Bøgelund Juel;

    2011-01-01

    miRNAs) are one class of such small RNAs which are expressed from the genome. The RISC system allows for non-perfect base pairing of miRNAs to their target genes why one small RNA can in theory silence large groups of genes at the same time. It is therefore anticipated that they are able to depress...

  11. Development of Primer Pairs from Molecular Typing of Rabies Virus Variants Present in Mexico

    Science.gov (United States)

    Ramírez-Hernández, Dolores G.; Lara-Padilla, Eleazar; Zárate-Segura, Paola

    2016-01-01

    Nucleoprotein (N) gene from rabies virus (RABV) is a useful sequence target for variant studies. Several specific RABV variants have been characterized in different mammalian hosts such as skunk, dog, and bats by using anti-nucleocapsid monoclonal antibodies (MAbs) via indirect fluorescent antibody (IFA) test, a technique not available in many laboratories in Mexico. In the present study, a total of 158 sequences of N gene from RABV were used to design eight pairs of primers (four external and four internal primers), for typing four different RABV variants (dog, skunk, vampire bat, and nonhematophagous bat) which are most common in Mexico. The results indicate that the primer and the typing variant from the brain samples, submitted to nested and/or real-time PCR, are in agreement in all four singleplex reactions, and the designed primer pairs are an alternative for use in specific variant RABV typing. PMID:27563666

  12. 神经元素3与成对盒基因4促进胰腺十二指肠同源框蛋白1诱导间充质干细胞向胰腺分泌细胞分化%Neurogenin 3 and Paired box gene 4 promote PDX1-induced differentiation of mesenchymal stem cells into pancreatic secretory cells

    Institute of Scientific and Technical Information of China (English)

    唐小龙; 肖瑞; 王云秀; 何敏; 谢婷; 张成; 刘思景

    2011-01-01

    目的:探索神经元素3(neurogenin 3,NGN3)与成对盒基因4(paired box gene 4,PAX4)对胰腺十二指肠同源框蛋白1(pancreatic and duodenal homeobox factor 1,PDX1)驱动间充质干细胞(mesenchymal stem cells,MSCs)向胰腺β细胞分化过程中的作用.方法:构建PDX1基因及NGN3与PAX4双基因表达腺病毒,重组腺病毒Adxsi-CMV-PDX1感染诱导MSCs1周后,再行重组腺病毒Adxsi-CMV-NGN3/CMV-PAX4感染诱导MSCs;分别检测PDX1、PAX4、NGN3、NK转录因子相关的2.2(NK transcription factor related,gene family 2,locus2,NKX2.2)、v-maf muscu-loaponeurotic fibrosarcoma oncogene homolog B(MafB)、胰岛素(Insulin)、胰高血糖素(Gucagon)多种胰腺分泌细胞相关分子表达情况.结果:成功构建腺病毒Adxsi-CMV-PDX1与Adxsi-CMV-NGN3/CMV-PAX4;MSCs经Adxsi-CMV-PDX1与Adxsi-CMV-NGN3/CMV-PAX4分步诱导后,免疫细胞化学与间接荧光检测显示PDX1、NGN3与PAX4因子在细胞核内稳定表达;重组腺病毒稳定转染5 d后,细胞开始变圆并集聚成团,用双硫腙(dithizone,DTZ)染色细胞质呈亮红色;细胞经诱导1周后,用RT-PCR检测到神经源分化因子1(neurogenic differentiation 1,NruroD1)与NKX2.2表达,2周后可检测胰岛素/胰岛素原分子;间接荧光检测显示诱导后的细胞先后开始表达NKX2.2、MafB等转录因子与胰岛素/胰岛素原、胰高血糖等胰岛分泌细胞相关分子,但未能检测到v-maf musculoaponeurotic fibrosarcoma oncogene homolog A(MafA)与C肽分子表达.结论:NGN3与PAX4对PDX1诱导间充质干细胞向胰腺分泌细胞分化具有促进作用.%Objective :To explore the role of neurogenin 3 ( NGN3 ) and paired box gene 4( PAX4) in the process of PDX1-driven mesenchymal stem cells ( MSCs) to the pancreatic β-cell differentiation. Methods : PDX1 gene and NGN3 were constructed with PAX4 genes expression adenovirus vectors. AdxsiCMV-PDX1 adenovirus infection induced MSCs. One week later, re-Adxsi-CMV-NGN3/CMV-PAX4 adenovirus infection

  13. CoopTFD: a repository for predicted yeast cooperative transcription factor pairs

    OpenAIRE

    Wu, Wei-Sheng; Lai, Fu-Jou; Tu, Bor-Wen; Chang, Darby Tien-Hao

    2016-01-01

    In eukaryotic cells, transcriptional regulation of gene expression is usually accomplished by cooperative Transcription Factors (TFs). Therefore, knowing cooperative TFs is helpful for uncovering the mechanisms of transcriptional regulation. In yeast, many cooperative TF pairs have been predicted by various algorithms in the literature. However, until now, there is still no database which collects the predicted yeast cooperative TFs from existing algorithms. This prompts us to construct Coope...

  14. Brain Activation during Memory Encoding in Type 2 Diabetes Mellitus: A Discordant Twin Pair Study

    OpenAIRE

    Wood, Amanda G.; Jian Chen; Christopher Moran; Thanh Phan; Richard Beare; Kimberley Cooper; Stacey Litras; Velandai Srikanth

    2016-01-01

    Type 2 diabetes mellitus increases the risk of dementia and neuronal dysfunction may occur years before perceptible cognitive decline. We aimed to study the impact of type 2 diabetes on brain activation during memory encoding in middle-aged people, controlling for age, sex, genes, and early-shared environment. Twenty-two twin pairs discordant for type 2 diabetes mellitus (mean age 60.9 years) without neurological disease were recruited from the Australian Twin Registry (ATR) and underwent fun...

  15. Top quark pair production at the LHC

    International Nuclear Information System (INIS)

    One of the most interesting and manifold processes in the Standard Model of elementary particle physics is the top quark pair production. It enabled the discovery of the top quark at the Tevatron in 1995 and the determination of many of its properties. By means of a precise measurement and calculation of the cross section of top quark pair production it is possible to extract the top quark mass. Improvements in the gluon parton distribution functions (important for the Higgs boson production) or improvements in the prediction of the Higgs mass are also closely linked with the top quark pair production. Furthermore, the production process plays an important role in the discovery of new physics. On the one hand the top quark pair decays form the largest part of the background in many BSM models, on the other hand BSM physics can be detected directly in the decay process by investigating the charge symmetry or the invariant mass spectrum. At the LHC it will be possible for the first time to produce a large amount of top quarks; thereby the statistical errors of the observables will be strongly reduced. The enormous increase in the production rate has two reasons. On the one hand, the acceleration energy of the LHC (14 TeV and 7 TeV) is significantly greater than that of the Tevatron (1.96 Tev). This leads to an increase of the cross section by a factor of 100 (∝7.3 pb at the Tevatron to ∝800 pb at 14 TeV LHC). On the other hand, the luminosity of the LHC outperforms the Tevatron by a factor of 10-100. The reduced experimental errors for the observables demand an improvement of the theoretical error. The experimental accuracy of the LHC and the great relevance of the process led to an intensive activity of different research groups in order to improve the calculation of the cross section of top quark pair production. This work presents for the first time a complete numerical result for the full NNLO correction for the top quark pair production in quark anti

  16. Top quark pair production at the LHC

    Energy Technology Data Exchange (ETDEWEB)

    Baernreuther, Peter

    2012-06-28

    One of the most interesting and manifold processes in the Standard Model of elementary particle physics is the top quark pair production. It enabled the discovery of the top quark at the Tevatron in 1995 and the determination of many of its properties. By means of a precise measurement and calculation of the cross section of top quark pair production it is possible to extract the top quark mass. Improvements in the gluon parton distribution functions (important for the Higgs boson production) or improvements in the prediction of the Higgs mass are also closely linked with the top quark pair production. Furthermore, the production process plays an important role in the discovery of new physics. On the one hand the top quark pair decays form the largest part of the background in many BSM models, on the other hand BSM physics can be detected directly in the decay process by investigating the charge symmetry or the invariant mass spectrum. At the LHC it will be possible for the first time to produce a large amount of top quarks; thereby the statistical errors of the observables will be strongly reduced. The enormous increase in the production rate has two reasons. On the one hand, the acceleration energy of the LHC (14 TeV and 7 TeV) is significantly greater than that of the Tevatron (1.96 Tev). This leads to an increase of the cross section by a factor of 100 ({proportional_to}7.3 pb at the Tevatron to {proportional_to}800 pb at 14 TeV LHC). On the other hand, the luminosity of the LHC outperforms the Tevatron by a factor of 10-100. The reduced experimental errors for the observables demand an improvement of the theoretical error. The experimental accuracy of the LHC and the great relevance of the process led to an intensive activity of different research groups in order to improve the calculation of the cross section of top quark pair production. This work presents for the first time a complete numerical result for the full NNLO correction for the top quark pair

  17. Paired structures and bipolar knowledge representation

    DEFF Research Database (Denmark)

    Montero, Javier; Bustince, Humberto; Franco, Camilo;

    In this strictly positional paper we propose a general approach to bipolar knowledge representation, where the meaning of concepts can be modelled by examining their decomposition into opposite and neutral categories. In particular, it is the semantic relationship between the opposite categories...... at the same time the type of neutrality rising in between opposites. Based on this first level of bipolar knowledge representation, paired structures in fact offer the means to characterize a specific bipolar valuation scale depending on the meaning of the concept that has to be verified. In this...

  18. Invisible Decays in Higgs Pair Production

    CERN Document Server

    Banerjee, Shankha; Spannowsky, Michael

    2016-01-01

    Observation of Higgs pair production is an important long term objective of the LHC physics program as it will shed light on the scalar potential of the Higgs field and the nature of electroweak symmetry breaking. While numerous studies have examined the impact of new physics on di-Higgs production, little attention has been given to the well-motivated possibility of exotic Higgs decays in this channel. Here we investigate the consequences of exotic invisible Higgs decays in di-Higgs production. We outline a search sensitive to such invisible decays in the $b\\bar b+{\

  19. Generalized magnetofluid connections in pair plasmas

    Energy Technology Data Exchange (ETDEWEB)

    Asenjo, Felipe A., E-mail: felipe.asenjo@uai.cl [Facultad de Ingeniería y Ciencias, Universidad Adolfo Ibáñez, Santiago 7941169 (Chile); Comisso, Luca, E-mail: lcomisso@princeton.edu [Department of Astrophysical Sciences and Princeton Plasma Physics Laboratory, Princeton University, Princeton, New Jersey 08544 (United States); Dipartimento Energia, Politecnico di Torino, Torino 10129, Italy and Istituto dei Sistemi Complessi-CNR, Roma 00185 (Italy); Mahajan, Swadesh M., E-mail: mahajan@mail.utexas.edu [Institute for Fusion Studies, The University of Texas at Austin, Austin, Texas 78712 (United States)

    2015-12-15

    We extend the magnetic connection theorem of ideal magnetohydrodynamics to nonideal relativistic pair plasmas. Adopting a generalized Ohm's law, we prove the existence of generalized magnetofluid connections that are preserved by the plasma dynamics. We show that these connections are related to a general antisymmetric tensor that unifies the electromagnetic and fluid fields. The generalized magnetofluid connections set important constraints on the plasma dynamics by forbidding transitions between configurations with different magnetofluid connectivity. An approximated solution is explicitly shown where the corrections due to current inertial effects are found.

  20. A biometric signcryption scheme without bilinear pairing

    Science.gov (United States)

    Wang, Mingwen; Ren, Zhiyuan; Cai, Jun; Zheng, Wentao

    2013-03-01

    How to apply the entropy in biometrics into the encryption and remote authentication schemes to simplify the management of keys is a hot research area. Utilizing Dodis's fuzzy extractor method and Liu's original signcryption scheme, a biometric identity based signcryption scheme is proposed in this paper. The proposed scheme is more efficient than most of the previous proposed biometric signcryption schemes for that it does not need bilinear pairing computation and modular exponentiation computation which is time consuming largely. The analysis results show that under the CDH and DL hard problem assumption, the proposed scheme has the features of confidentiality and unforgeability simultaneously.

  1. The split decomposition of a tridiagonal pair

    OpenAIRE

    Nomura, Kazumasa; Terwilliger, Paul

    2006-01-01

    Let $K$ denote a field and let $V$ denote a vector space over $K$ with finite positive dimension. We consider a pair of linear transformations $A:V \\to V$ and $A^*:V \\to V$ that satisfy (i)--(iv) below: (i) Each of $A$, $A^*$ is diagonalizable. (ii) There exists an ordering $V_{0},V_{1},...,V_{d}$ of the eigenspaces of $A$ such that $A^* V_i \\subseteq V_{i-1} + V_{i} + V_{i+1}$ for $0 \\leq i \\leq d$, where $V_{-1}=0$, $V_{d+1}=0$. (iii) There exists an ordering $V^*_{0},V^*_{1},...,V^*_{\\delt...

  2. Interacting pion pairs in nuclear matter

    OpenAIRE

    Grion, Nevio

    2000-01-01

    The pion-production $\\pi^+ A \\to \\pi^+\\pi^{\\pm} A'$ reactions were studied on nuclei $^{2}H$, $^{12}C$, $^{40}Ca$ and $^{208}Pb$ at a pion energy of $T_{\\pi^{+}}$=283 MeV using the CHAOS spectrometer. The experimental results are reduced to differential cross sections and compared to both theoretical predictions and reaction phase space. Near the $2m_{\\pi}$ threshold pion pairs couple to $(\\pi\\pi)_{I=J=0}$ when produced in the $\\pi^+\\to \\pi^+\\pi^-$ reaction channel. The $\\cal C$$_{\\pi\\pi}^A$ ...

  3. Matched molecular pair analysis in drug discovery.

    Science.gov (United States)

    Dossetter, Alexander G; Griffen, Edward J; Leach, Andrew G

    2013-08-01

    Multiple parameter optimisation in drug discovery is difficult, but Matched Molecular Pair Analysis (MMPA) can help. Computer algorithms can process data in an unbiased way to yield design rules and suggest better molecules, cutting the number of design cycles. The approach often makes more suggestions than can be processed manually and methods to deal with this are proposed. However, there is a paucity of contextually specific design rules, which would truly make the technique powerful. By combining extracted information from multiple sources there is an opportunity to solve this problem and advance medicinal chemistry in a matter of months rather than years. PMID:23557664

  4. Efficient Certificateless Signcryption Scheme from Weil Pairing

    Directory of Open Access Journals (Sweden)

    Gang Yu

    2011-08-01

    Full Text Available Certificateless signcryption has both the advantage of certificateless public key cryptography, which overcome the escrow problem inherited from identity based cryptography without the use of certificates as in traditional public key cryptography, and signcryption which can fulfill both the functions of signature and encryption in a logical signal step. In this paper, we explicit the security model for certificateless signcryption and propose an efficient certificateless signcryption scheme from Weil pairings. The new scheme not only can be proved to be secure in our model but also can simultaneously provide public verifiability and forward security. Furthermore, compared with existing schemes, the new scheme is more efficient.

  5. Generalized magnetofluid connections in pair plasmas

    Science.gov (United States)

    Asenjo, Felipe A.; Comisso, Luca; Mahajan, Swadesh M.

    2015-12-01

    We extend the magnetic connection theorem of ideal magnetohydrodynamics to nonideal relativistic pair plasmas. Adopting a generalized Ohm's law, we prove the existence of generalized magnetofluid connections that are preserved by the plasma dynamics. We show that these connections are related to a general antisymmetric tensor that unifies the electromagnetic and fluid fields. The generalized magnetofluid connections set important constraints on the plasma dynamics by forbidding transitions between configurations with different magnetofluid connectivity. An approximated solution is explicitly shown where the corrections due to current inertial effects are found.

  6. Mated Fingerprint Card Pairs 2 (MFCP2)

    Science.gov (United States)

    NIST Mated Fingerprint Card Pairs 2 (MFCP2) (PC database for purchase)   NIST Special Database 14 is being distributed for use in development and testing of automated fingerprint classification and matching systems on a set of images which approximate a natural horizontal distribution of the National Crime Information Center (NCIC) fingerprint classes. A newer version of the compression/decompression software on the CDROM can be found at the website http://www.nist.gov/itl/iad/ig/nigos.cfm as part of the NBIS package.

  7. Generalized Magnetofluid Connections in Pair Plasmas

    CERN Document Server

    Asenjo, Felipe A; Mahajan, Swadesh M

    2015-01-01

    We extend the magnetic connection theorem of ideal magnetohydrodynamics to nonideal relativistic pair plasmas. Adopting a generalized Ohm's law, we prove the existence of generalized magnetofluid connections that are preserved by the plasma dynamics. We show that these connections are related to a general antisymmetric tensor that unifies the electromagnetic and fluid fields. The generalized magnetofluid connections set important constraints on the plasma dynamics by forbidding transitions between configurations with different magnetofluid connectivity. An approximated solution is explicitly shown where the corrections due to current inertial effects are found.

  8. Z Boson Pair-Production at LEP

    CERN Document Server

    Achard, P; Aguilar-Benítez, M; Alcaraz, J; Alemanni, G; Allaby, James V; Aloisio, A; Alviggi, M G; Anderhub, H; Andreev, V P; Anselmo, F; Arefev, A; Azemoon, T; Aziz, T; Bagnaia, P; Bajo, A; Baksay, G; Baksay, L; Baldew, S V; Banerjee, S; Banerjee, Sw; Barczyk, A; Barillère, R; Bartalini, P; Basile, M; Batalova, N; Battiston, R; Bay, A; Becattini, F; Becker, U; Behner, F; Bellucci, L; Berbeco, R; Berdugo, J; Berges, P; Bertucci, B; Betev, B L; Biasini, M; Biglietti, M; Biland, A; Blaising, J J; Blyth, S C; Bobbink, Gerjan J; Böhm, A; Boldizsar, L; Borgia, B; Bottai, S; Bourilkov, D; Bourquin, Maurice; Braccini, S; Branson, J G; Brochu, F; Burger, J D; Burger, W J; Cai, X D; Capell, M; Cara Romeo, G; Carlino, G; Cartacci, A M; Casaus, J; Cavallari, F; Cavallo, N; Cecchi, C; Cerrada, M; Chamizo-Llatas, M; Chang, Y H; Chemarin, M; Chen, A; Chen, G; Chen, G M; Chen, H F; Chen, H S; Chiefari, G; Cifarelli, Luisa; Cindolo, F; Clare, I; Clare, R; Coignet, G; Colino, N; Costantini, S; de la Cruz, B; Cucciarelli, S; van Dalen, J A; De Asmundis, R; Déglon, P L; Debreczeni, J; Degré, A; Dehmelt, K; Deiters, K; Della Volpe, D; Delmeire, E; Denes, P; De Notaristefani, F; De Salvo, A; Diemoz, M; Dierckxsens, M; Dionisi, C; Dittmar, M; Doria, A; Dova, M T; Duchesneau, D; Duda, M; Echenard, B; Eline, A; El-Hage, A; El-Mamouni, H; Engler, A; Eppling, F J; Extermann, P; Falagán, M A; Falciano, S; Favara, A; Fay, J; Fedin, O; Felcini, M; Ferguson, T; Fesefeldt, H S; Fiandrini, E; Field, J H; Filthaut, Frank; Fisher, P H; Fisher, W; Fisk, I; Forconi, G; Freudenreich, Klaus; Furetta, C; Galaktionov, Yu; Ganguli, S N; García-Abia, P; Gataullin, M; Gentile, S; Giagu, S; Gong, Z F; Grenier, G; Grimm, O; Grünewald, M W; Guida, M; van Gulik, R; Gupta, V K; Gurtu, A; Gutay, L J; Haas, D; Hatzifotiadou, D; Hebbeker, T; Hervé, A; Hirschfelder, J; Hofer, H; Hohlmann, M; Holzner, G; Hou, S R; Hu, Y; Jin, B N; Jones, L W; de Jong, P; Josa-Mutuberria, I; Käfer, D; Kaur, M; Kienzle-Focacci, M N; Kim, J K; Kirkby, Jasper; Kittel, E W; Klimentov, A; König, A C; Kopal, M; Koutsenko, V F; Kräber, M H; Krämer, R W; Krüger, A; Kunin, A; Ladrón de Guevara, P; Laktineh, I; Landi, G; Lebeau, M; Lebedev, A; Lebrun, P; Lecomte, P; Lecoq, P; Le Coultre, P; Le Goff, J M; Leiste, R; Levtchenko, M; Levchenko, P M; Li, C; Likhoded, S; Lin, C H; Lin, W T; Linde, Frank L; Lista, L; Liu, Z A; Lohmann, W; Longo, E; Lü, Y S; Luci, C; Luminari, L; Lustermann, W; Ma Wen Gan; Malgeri, L; Malinin, A; Maña, C; Mans, J; Martin, J P; Marzano, F; Mazumdar, K; McNeil, R R; Mele, S; Merola, L; Meschini, M; Metzger, W J; Mihul, A; Milcent, H; Mirabelli, G; Mnich, J; Mohanty, G B; Muanza, G S; Muijs, A J M; Musicar, B; Musy, M; Nagy, S; Natale, S; Napolitano, M; Nessi-Tedaldi, F; Newman, H; Nisati, A; Novák, T; Nowak, H; Ofierzynski, R A; Organtini, G; Pal, I; Palomares, C; Paolucci, P; Paramatti, R; Passaleva, G; Patricelli, S; Paul, T; Pauluzzi, M; Paus, C; Pauss, Felicitas; Pedace, M; Pensotti, S; Perret-Gallix, D; Petersen, B; Piccolo, D; Pierella, F; Pioppi, M; Piroué, P A; Pistolesi, E; Plyaskin, V; Pohl, M; Pozhidaev, V; Pothier, J; Prokofev, D; Prokofiev, D O; Quartieri, J; Rahal-Callot, G; Rahaman, M A; Raics, P; Raja, N; Ramelli, R; Rancoita, P G; Ranieri, R; Raspereza, A V; Razis, P A; Ren, D; Rescigno, M; Reucroft, S; Riemann, S; Riles, K; Roe, B P; Romero, L; Rosca, A; Rosier-Lees, S; Roth, S; Rosenbleck, C; Roux, B; Rubio, J A; Ruggiero, G; Rykaczewski, H; Sakharov, A; Saremi, S; Sarkar, S; Salicio, J; Sánchez, E; Schäfer, C; Shchegelskii, V; Schopper, Herwig Franz; Schotanus, D J; Sciacca, C; Servoli, L; Shevchenko, S; Shivarov, N; Shoutko, V; Shumilov, E; Shvorob, A V; Son, D; Souga, C; Spillantini, P; Steuer, M; Stickland, D P; Stoyanov, B; Strässner, A; Sudhakar, K; Sultanov, G G; Sun, L Z; Sushkov, S; Suter, H; Swain, J D; Szillási, Z; Tang, X W; Tarjan, P; Tauscher, Ludwig; Taylor, L; Tellili, B; Teyssier, D; Timmermans, C; Ting, Samuel C C; Ting, S M; Tonwar, S C; Tóth, J; Tully, C; Tung, K L; Ulbricht, J; Valente, E; Van de Walle, R T; Vásquez, R; Veszpremi, V; Vesztergombi, G; Vetlitskii, I; Vicinanza, D; Viertel, Gert M; Villa, S; Vivargent, M; Vlachos, S; Vodopyanov, I; Vogel, H; Vogt, H; Vorobev, I; Vorobyov, A A; Wadhwa, M; Wang, Q; Wang, X L; Wang, Z M; Weber, M; Wienemann, P; Wilkens, H; Wynhoff, S; Xia, L; Xu, Z Z; Yamamoto, J; Yang, B Z; Yang, C G; Yang, H J; Yang, M; Yeh, S C; Zalite, A; Zalite, Yu; Zhang, Z P; Zhao, J; Zhu, G Y; Zhu, R Y; Zhuang, H L; Zichichi, A; Zimmermann, B; Zöller, M

    2003-01-01

    Events stemming from the pair-production of Z bosons in e^+e^- collisions are studied using 217.4 pb^-1 of data collected with the L3 detector at centre-of-mass energies from 200 GeV up to 209 GeV. The special case of events with b quarks is also investigated. Combining these events with those collected at lower centre-of-mass energies, the Standard Model predictions for the production mechanism are verified. In addition, limits are set on anomalous couplings of neutral gauge bosons and on effects of extra space dimensions.

  9. Pair Negotiation When Developing English Speaking Tasks

    Directory of Open Access Journals (Sweden)

    Ingrid Liliana Bohórquez Suárez

    2011-12-01

    Full Text Available This study analyzes what characterizes the negotiations of seventh graders at a public school in Bogotá when working in pairs to develop speaking tasks in EFL classes. The inquiry is a descriptive case study that follows the qualitative paradigm. As a result of analyzing the data, we obtained four consecutive steps that characterize students’ negotiations: Establishing a connection with a partner to work with, proposing practical alternatives, refusing mates’ propositions, and making practical decisions. Moreover, we found that the constant performance of the process of negotiation provokes students to construct a sociolinguistic identity that allows agreements to emerge.

  10. Generalized magnetofluid connections in pair plasmas

    International Nuclear Information System (INIS)

    We extend the magnetic connection theorem of ideal magnetohydrodynamics to nonideal relativistic pair plasmas. Adopting a generalized Ohm's law, we prove the existence of generalized magnetofluid connections that are preserved by the plasma dynamics. We show that these connections are related to a general antisymmetric tensor that unifies the electromagnetic and fluid fields. The generalized magnetofluid connections set important constraints on the plasma dynamics by forbidding transitions between configurations with different magnetofluid connectivity. An approximated solution is explicitly shown where the corrections due to current inertial effects are found

  11. Slepton pair production in the POWHEG BOX

    International Nuclear Information System (INIS)

    We present an implementation for slepton pair production at hadron colliders in the POWHEG BOX, a framework for combining next-to-leading order QCD calculations with parton-shower Monte-Carlo programs. Our code provides a SUSY Les Houches Accord interface for setting the supersymmetric input parameters. Decays of the sleptons and parton-shower effects are simulated with PYTHIA. Our Monte-Carlo program allows the generation of events, and thus of arbitrary distributions with appropriate selection cuts. Kinematic distributions of experimentally observable quantities are shown for a representative point in the supersymmetric parameter space.

  12. Topological edge states of bound photon pairs

    CERN Document Server

    Gorlach, Maxim A

    2016-01-01

    We predict the existence of interaction-driven edge states of bound two-photon quasiparticles in a dimer periodic array of nonlinear optical cavities. Energy spectrum of photon pairs is dramatically richer than in the noninteracting case or in a simple lattice, featuring collapse and revival of multiple edge and bulk modes as well as edge states in continuum. Despite the unexpected breakdown of the Zak phase technique and the edge mixing of internal and center-of-mass motion we link the edge state existence to the two-photon quantum walk graph connectivity, thus uncovering the topological nature of the many-body problem in complex lattices.

  13. Hadroproduction of massive lepton pairs and QCD

    International Nuclear Information System (INIS)

    A survey is presented of some current issues of interest in attempts to describe the production of massive lepton pairs in hadronic collisions at high energies. I concentrate on the interpretation of data in terms of the parton model and on predictions derived from quantum-chromodynamics (QCD), their reliability and their confrontation with experiment. Among topics treated are the connection with deep-inelastic lepton scattering, universality of structure functions, and the behavior of cross-sections as a function of transverse momentum

  14. Treatment of pairing correlations based on the equations of motion for zero-coupled pair operators

    International Nuclear Information System (INIS)

    The pairing problem is treated by means of the equations of motion for zero-coupled pair operators. Exact equations for the seniority-v states of N particles are derived. These equations can be solved by a step-by-step procedure which consists of progressively adding pairs of particles to a core. The theory can be applied at several levels of approximation depending on the number of core states which are taken into account. Some numerical applications to the treatment of v = 0, v = 1, and v = 2 states in the Ni isotopes are performed. The accuracy of various approximations is tested by comparison with exact results. For the seniority-one and seniority-two problems it turns out that the results obtained from the first-order theory are very accurate, while those of higher order calculations are practically exact. Concerning the seniority-zero problem, a fifth-order calculation reproduces quite well the three lowest states

  15. Treatment of pairing correlations based on the equations of motion for zero-coupled pair operators

    Energy Technology Data Exchange (ETDEWEB)

    Andreozzi, F.; Covello, A.; Gargano, A.; Ye, L.J.; Porrino, A.

    1985-07-01

    The pairing problem is treated by means of the equations of motion for zero-coupled pair operators. Exact equations for the seniority-v states of N particles are derived. These equations can be solved by a step-by-step procedure which consists of progressively adding pairs of particles to a core. The theory can be applied at several levels of approximation depending on the number of core states which are taken into account. Some numerical applications to the treatment of v = 0, v = 1, and v = 2 states in the Ni isotopes are performed. The accuracy of various approximations is tested by comparison with exact results. For the seniority-one and seniority-two problems it turns out that the results obtained from the first-order theory are very accurate, while those of higher order calculations are practically exact. Concerning the seniority-zero problem, a fifth-order calculation reproduces quite well the three lowest states.

  16. Synergy between pair coupled cluster doubles and pair density functional theory

    Energy Technology Data Exchange (ETDEWEB)

    Garza, Alejandro J.; Bulik, Ireneusz W. [Department of Chemistry, Rice University, Houston, Texas 77251-1892 (United States); Henderson, Thomas M. [Department of Chemistry and Department of Physics and Astronomy, Rice University, Houston, Texas 77251-1892 (United States); Scuseria, Gustavo E. [Department of Chemistry and Department of Physics and Astronomy, Rice University, Houston, Texas 77251-1892 (United States); Chemistry Department, Faculty of Science, King Abdulaziz University, Jeddah 21589 (Saudi Arabia)

    2015-01-28

    Pair coupled cluster doubles (pCCD) has been recently studied as a method capable of accounting for static correlation with low polynomial cost. We present three combinations of pCCD with Kohn–Sham functionals of the density and on-top pair density (the probability of finding two electrons on top of each other) to add dynamic correlation to pCCD without double counting. With a negligible increase in computational cost, these pCCD+DFT blends greatly improve upon pCCD in the description of typical problems where static and dynamic correlations are both important. We argue that—as a black-box method with low scaling, size-extensivity, size-consistency, and a simple quasidiagonal two-particle density matrix—pCCD is an excellent match for pair density functionals in this type of fusion of multireference wavefunctions with DFT.

  17. Superluminal Spot Pair Events in Astronomical Settings: Sweeping Beams

    CERN Document Server

    Nemiroff, Robert J

    2014-01-01

    Sweeping beams of light can cast spots moving with superluminal speeds across scattering surfaces. Such faster-than-light speeds are well-known phenomena that do not violate special relativity. It is shown here that under certain circumstances, superluminal spot pair creation and annihilation events can occur that provide unique information to observers. These spot pair events are {\\it not} particle pair events -- they are the sudden creation or annihilation of a pair of relatively illuminated spots on a scattering surface. Real spot pair illumination events occur unambiguously on the scattering surface when spot speeds diverge, while virtual spot pair events are observer dependent and perceived only when real spot radial speeds cross the speed of light. Specifically, a virtual spot pair creation event will be observed when a real spot's speed toward the observer drops below $c$, while a virtual spot pair annihilation event will be observed when a real spot's radial speed away from the observer rises above $c...

  18. Pair emission from bare magnetized strange stars

    CERN Document Server

    Melrose, D B; Peres-Menezes, D

    2006-01-01

    The dominant emission from bare strange stars is thought to be electron-positron pairs, produced through spontaneous pair creation (SPC) in a surface layer of electrons tied to the star by a superstrong electric field. The positrons escape freely, but the electrons are directed towards the star and quickly fill all available states, such that their degeneracy suppresses further SPC. An electron must be reflected and gain energy in order to escape, along with the positron. Each escaping electron leaves a hole that is immediately filled by another electron through SPC. We discuss the collisional processes that produce escaping electrons. When the Landau quantization of the motion perpendicular to the magnetic field is taken into account, electron-electron collisions can lead to an escaping electron only through a multi-stage process involving higher Landau levels. Although the available estimates of the collision rate are deficient in several ways, it appears that the rate is too low for electron-electron colli...

  19. Optimisation of a quantum pair space thruster

    Directory of Open Access Journals (Sweden)

    Valeriu DRAGAN

    2012-06-01

    Full Text Available The paper addresses the problem of propulsion for long term space missions. Traditionally a space propulsion unit has a propellant mass which is ejected trough a nozzle to generate thrust; this is also the case with inert gases energized by an on-board power unit. Unconventional methods for propulsion include high energy LASERs that rely on the momentum of photons to generate thrust. Anti-matter has also been proposed for energy storage. Although the momentum of ejected gas is significantly higher, the LASER propulsion offers the perspective of unlimited operational time – provided there is a power source. The paper will propose the use of the quantum pair formation for generating a working mass, this is different than conventional anti-matter thrusters since the material particles generated are used as propellant not as energy storage.Two methods will be compared: LASER and positron-electron, quantum pair formation. The latter will be shown to offer better momentum above certain energy levels.For the demonstrations an analytical solution is obtained and provided in the form of various coefficients. The implications are, for now, theoretical however the practicality of an optimized thruster using such particles is not to be neglected for long term space missions.

  20. Parenting and Psychopathology in Sibling Pairs

    Directory of Open Access Journals (Sweden)

    Jiri Modestin

    2008-06-01

    Full Text Available Background: The current study explored the relationship between parenting experience in childhood as a specific aspect of the non-shared environment and the amount of psychopathology in adulthood. Sampling and Methods: 27 same-sex sibling pairs were studied. In each pair, one proband was a psychiatric outpatient, the other proband a non-patient. All probands filled in the Parental Bonding Instrument (PBI and the Symptom Checklist-90-Revised (SCL-90-R. Results: The patients rated higher on practically all SCL-90-R scales whereas no significant differences were found with regard to the PBI ratings. With only one exception, there were no significant correlations between PBI and SCL-90-R ratings in the group of patients. In contrast, all SCL-90-R subscales correlated negatively with paternal care and half of them positively with paternal control in patients' healthy siblings. Conclusions: The degree of paternal care seems to be most closely related with lack of mental symptoms in psychiatric non-patients. In contrast, parenting does not seem to play a substantial role in patients, presenting with a higher degree of psychopathology. Obviously, environmental factors become less important, the more pronounced the pathology.

  1. ``Schooling'' of wing pairs in flapping flight

    Science.gov (United States)

    Ramananarivo, Sophie; Zhang, Jun; Ristroph, Leif; AML, Courant Collaboration; Physics NYU Collaboration

    2015-11-01

    The experimental setup implements two independent flapping wings swimming in tandem. Both are driven with the same prescribed vertical heaving motion, but the horizontal motion is free, which means that the swimmers can take up any relative position and forward speed. Experiments show however clearly coordinated motions, where the pair of wings `crystallize' into specific stable arrangements. The follower wing locks into the path of the leader, adopting its speed, and with a separation distance that takes on one of several discrete values. By systematically varying the kinematics and wing size, we show that the set of stable spacings is dictated by the wavelength of the periodic wake structure. The forces maintaining the pair cohesion are characterized by applying an external force to the follower to perturb it away from the `stable wells'. These results show that hydrodynamics alone is sufficient to induce cohesive and coordinated collective locomotion through a fluid, and we discuss the hypothesis that fish schools and bird flocks also represent stable modes of motion.

  2. Convective Polymer Depletion on Pair Particle Interactions

    Science.gov (United States)

    Fan, Tai-Hsi; Taniguchi, Takashi; Tuinier, Remco

    2011-11-01

    Understanding transport, reaction, aggregation, and viscoelastic properties of colloid-polymer mixture is of great importance in food, biomedical, and pharmaceutical sciences. In non-adsorbing polymer solutions, colloidal particles tend to aggregate due to the depletion-induced osmotic or entropic force. Our early development for the relative mobility of pair particles assumed that polymer reorganization around the particles is much faster than particle's diffusive time, so that the coupling of diffusive and convective effects can be neglected. Here we present a nonequilibrium two-fluid (polymer and solvent) model to resolve the convective depletion effect. The theoretical framework is based on ground state approximation and accounts for the coupling of fluid flow and polymer transport to better describe pair particle interactions. The momentum and polymer transport, chemical potential, and local viscosity and osmotic pressure are simultaneously solved by numerical approximation. This investigation is essential for predicting the demixing kinetics in the pairwise regime for colloid-polymer mixtures. This work is supported by NSF CMMI 0952646.

  3. Pair Fireball Precursors of Neutron Star Mergers

    CERN Document Server

    Metzger, Brian D

    2016-01-01

    If at least one neutron star (NS) is magnetized in a binary NS merger, then the orbital motion of the conducting companion through its dipole field during the final inspiral induces a strong voltage and current along the magnetic field lines connecting the two objects. If a modest fraction eta of the electromagnetic power extracted during the inspiral is used to accelerate relativistic particles, the resulting gamma-ray emission in such a compact volume will result in the formation of a thermal electron-positron pair fireball. Applying the steady-state pair wind model of Paczynski (1986), we quantify the luminosities and temperatures of the precursor fireball and its detectability with gamma-ray satellites. Under the assumption that eta ~ 1, the gamma-ray detection horizon of Dmax ~ 20(Bd/1e14 G) is much closer than the Advanced LIGO/Virgo horizon of 200 Mpc, unless the surface magnetic field of the NS is very strong, Bd > 1e15 G. Given the quasi-isotropic nature of the emission, a sub-population of mergers w...

  4. Leptoquark pair production in hadronic interactions

    International Nuclear Information System (INIS)

    The scalar and vector leptoquark pair production cross sections in hadronic collisions are calculated. In a model independent analysis we consider the most general C and P conserving couplings of gluons to both scalar and vector leptoquarks described by an effective low-energy Lagangian which obeys SU(3)c invariance. Analytrical expressions are derived for the differential and integral scattering cross sections including the case of anomalous vector leptoquark couplings, κG and λG, to the gluon field. Numerical predictions are given for the kinematic range of the TEVATRON and LHC. The pair production cross sections are also calculated for the resolved photon contributions to ep → e anti ΦΦX at HERA and LEP x LHC, and for the process γγ → Φ anti ΦX at possible future e+e- linear colliders and γγ colliders. Estimates of the search potential for scalar and vector leptoquarks at present and future high energy colliders are given. (orig.)

  5. Pair Production Constraints on Superluminal Neutrinos Revisited

    Energy Technology Data Exchange (ETDEWEB)

    Brodsky, Stanley J.; /SLAC; Gardner, Susan; /Kentucky U.

    2012-02-16

    We revisit the pair creation constraint on superluminal neutrinos considered by Cohen and Glashow in order to clarify which types of superluminal models are constrained. We show that a model in which the superluminal neutrino is effectively light-like can evade the Cohen-Glashow constraint. In summary, any model for which the CG pair production process operates is excluded because such timelike neutrinos would not be detected by OPERA or other experiments. However, a superluminal neutrino which is effectively lightlike with fixed p{sup 2} can evade the Cohen-Glashow constraint because of energy-momentum conservation. The coincidence involved in explaining the SN1987A constraint certainly makes such a picture improbable - but it is still intrinsically possible. The lightlike model is appealing in that it does not violate Lorentz symmetry in particle interactions, although one would expect Hughes-Drever tests to turn up a violation eventually. Other evasions of the CG constraints are also possible; perhaps, e.g., the neutrino takes a 'short cut' through extra dimensions or suffers anomalous acceleration in matter. Irrespective of the OPERA result, Lorentz-violating interactions remain possible, and ongoing experimental investigation of such possibilities should continue.

  6. EVOG: a database for evolutionary analysis of overlapping genes

    OpenAIRE

    Kim, Dae-Soo; Cho, Chi-Young; Huh, Jae-Won; Kim, Heui-Soo; Cho, Hwan-Gue

    2008-01-01

    Overlapping genes are defined as a pair of genes whose transcripts are overlapped. Recently, many cases of overlapped genes have been investigated in various eukaryotic organisms; however, their origin and transcriptional control mechanism has not yet been clearly determined. In this study, we implemented evolutionary visualizer for overlapping genes (EVOG), a Web-based DB with a novel visualization interface, to investigate the evolutionary relationship between overlapping genes. Using this ...

  7. Quantum theory of transition radiation and transition pair creation

    OpenAIRE

    Baier, V. N.; Katkov, V. M.

    1998-01-01

    Theory of the transition radiation and the transition pair creation is developed in the frame of QED. The spectral-angular distributions of probability of the transition radiation and of the transition pair creation are found. The total energy losses of and the total probability of pair creation are calculated and analyzed. Features of radiation and pair creation processes in a superdence medium (typical for white dwarfs) are discussed.

  8. From an insulating to a superfluid pair-bond liquid

    OpenAIRE

    Cuoco, Mario; Ranninger, Julius

    2006-01-01

    We study an exchange coupled system of itinerant electrons and localized fermion pairs resulting in a resonant pairing formation. This system inherently contains resonating fermion pairs on bonds which lead to a superconducting phase provided that long range phase coherence between their constituents can be established. The prerequisite is that the resonating fermion pairs can become itinerant. This is rendered possible through the emergence of two kinds of bond-fermions: individual and compo...

  9. SD-pair shell model for even-even systems

    International Nuclear Information System (INIS)

    A nucleon-pair shell model was proposed in 1993 by J. Q. Chen. Due to the success of the interacting boson model, the full shell model space in the nucleon-pair shell model was truncated to SD-pair subspace, called SD-pair shell model. Within this model, the experimental spectra in medium-weight and heavy nuclei, limiting cases in the interacting boson model, phase transitions, etc. can be reproduced approximately. (author)

  10. Diffraction of collinear correlated photon pairs by an ultrasonic wave

    OpenAIRE

    Kwiek, Piotr

    2013-01-01

    The phenomenon of collinear correlated photon pairs diffraction by an ultrasonic wave is investigated for Bragg incidence. A BBO crystal was used for producing collinear correlated photon pairs via type-I spontaneous parametric down-conversion (SPDC I-type). It is shown experimentally that the Bragg angle for photon pairs diffraction is identical to the one corresponding to single photons diffraction. The numbers of single photons and photon pairs counts in discrete diffraction orders were me...

  11. Pairing effect on nuclear level density parameters in 116Sn

    International Nuclear Information System (INIS)

    Pairing correlations have a special importance for many fermion systems. Pairing correlations have been successfully described by the Bardeen-Cooper-Schrieffer (BCS) theory of superconductivity. In this work, the pairing gap parameters as a function of nuclear temperature for 116Sn have been evaluated. Then the nuclear level density and entropy have been determined using BCS Hamiltonian with inclusion of pairing effects. Also temperature dependence of level density parameters has been investigated.

  12. Evolutionary Approach for Relative Gene Expression Algorithms

    OpenAIRE

    Marcin Czajkowski; Marek Kretowski

    2014-01-01

    A Relative Expression Analysis (RXA) uses ordering relationships in a small collection of genes and is successfully applied to classiffication using microarray data. As checking all possible subsets of genes is computationally infeasible, the RXA algorithms require feature selection and multiple restrictive assumptions. Our main contribution is a specialized evolutionary algorithm (EA) for top-scoring pairs called EvoTSP which allows finding more advanced gene relations. We managed to unify t...

  13. Fountain-Gould Left Orders for Associative Pairs

    Institute of Scientific and Technical Information of China (English)

    José A. ANQUELA; Teresa CORT(E)S; Miguel G(O)MEZ LOZANO; Mercedes SILES MOLINA

    2006-01-01

    In this paper, we introduce a notion of weak Fountain-Gould left order for associative pairs and give a Goldie-like theory of associative pairs which are weak Fountain-Gould left orders in semiprime pairs coinciding with their socles.

  14. Influence of pairing in double beta decay of48Ca

    Indian Academy of Sciences (India)

    Prianka Roy; Shashi K Dhiman

    2010-03-01

    Two-neutrino decay matrix elements and half-life of 48Ca are calculated after including neutron–proton pairing correlations in projected Hartree–Fock–Bogoliubov (PHFB) formalism. The GT matrix elements in 2 decay are reduced due to broader smearing of Fermi surfaces. Half-life results for 2 decay of 48Ca with np pairing are better than without pairing.

  15. PairWise Neighbours database: overlaps and spacers among prokaryote genomes

    Directory of Open Access Journals (Sweden)

    Garcia-Vallvé Santiago

    2009-06-01

    Full Text Available Abstract Background Although prokaryotes live in a variety of habitats and possess different metabolic and genomic complexity, they have several genomic architectural features in common. The overlapping genes are a common feature of the prokaryote genomes. The overlapping lengths tend to be short because as the overlaps become longer they have more risk of deleterious mutations. The spacers between genes tend to be short too because of the tendency to reduce the non coding DNA among prokaryotes. However they must be long enough to maintain essential regulatory signals such as the Shine-Dalgarno (SD sequence, which is responsible of an efficient translation. Description PairWise Neighbours is an interactive and intuitive database used for retrieving information about the spacers and overlapping genes among bacterial and archaeal genomes. It contains 1,956,294 gene pairs from 678 fully sequenced prokaryote genomes and is freely available at the URL http://genomes.urv.cat/pwneigh. This database provides information about the overlaps and their conservation across species. Furthermore, it allows the wide analysis of the intergenic regions providing useful information such as the location and strength of the SD sequence. Conclusion There are experiments and bioinformatic analysis that rely on correct annotations of the initiation site. Therefore, a database that studies the overlaps and spacers among prokaryotes appears to be desirable. PairWise Neighbours database permits the reliability analysis of the overlapping structures and the study of the SD presence and location among the adjacent genes, which may help to check the annotation of the initiation sites.

  16. Sequence-specific high mobility group box factors recognize 10-12-base pair minor groove motifs

    DEFF Research Database (Denmark)

    van Beest, M; Dooijes, D; van De Wetering, M; Kjaerulff, S; Bonvin, A; Nielsen, O; Clevers, H; Nielsen, Olaf

    2000-01-01

    promoter elements controlled by the yeast genes ste11 and Rox1 has indicated strict conservation of a larger DNA motif. By site selection, we identify a highly specific 12-base pair motif for Ste11, AGAACAAAGAAA. Similarly, we show that Tcf1, MatMc, and Sox4 bind unique, highly specific DNA motifs of 12...

  17. Modeling within-pair order effects in paired-comparison judgments

    DEFF Research Database (Denmark)

    Wickelmaier, Florian Maria; Choisel, Sylvain

    Prohabilistic choice models which generalize the Bradley-Terry-Luce (BTL) model (Luce, 1959) and the elimination-by- aspects (EBA) model (Tversky, 1972) are presented. These models account for the effect of presentation order within a pair of stimuli, and thereby allow for quantifying judgmental...

  18. Frustrated Lewis pairs: Design and reactivity

    Indian Academy of Sciences (India)

    Sanjoy Mukherjee; Pakkirisamy Thilagar

    2015-02-01

    The interaction of a Lewis acid with a Lewis base results in the formation of a Lewis acid–base adduct. Understanding Lewis acids and bases is central to conceptualizing chemical interactions and constitutes a major portion of metal–ligand chemistry. Sterically encumbered/constrained Lewis pairs cannot form acid–base adducts, but such ‘Frustrated Lewis Pairs’ (FLPs), with their unquenched electronic demands can be elegantly used to simultaneously react with a third species, resulting in unusual reactivity of small molecules. Such unusual reactions, explored only in the last few years, have found several applications, e.g., heterolytic splitting of H2, activation of small molecules (CO2, N2O, etc.). FLPs have opened new opportunities in synthetic chemistry, covering organic, main group as well as transition metal chemistry. The design strategies adopted for FLP systems and their unique reactivity are discussed here.

  19. Pairing in bulk nuclear matter beyond BCS

    International Nuclear Information System (INIS)

    The influence of short-range correlations on the spectral distribution of neutrons is incorporated in the solution of the gap equation for the 3P2−3F2 coupled channel in pure neutron matter. This effect is studied for different realistic interactions including one based on chiral perturbation theory. The gap in this channel vanishes at all relevant densities due to the treatment of these correlations. We also consider the effect of long-range correlations by including polarization terms in addition to the bare interaction which allow the neutrons to exchange density and spin fluctuations governed by the strength of Landau parameters allowed to have reasonable values consistent with the available literature. Preliminary results indicate that reasonable values of these parameters do not generate a gap in the 3P2−3F2 coupled channel either for all three realistic interactions although the pairing interaction becomes slightly more attractive

  20. Dust trapping in inviscid vortex pairs

    CERN Document Server

    Angilella, Jean-Regis

    2010-01-01

    The motion of tiny heavy particles transported in a co-rotating vortex pair, with or without particle inertia and sedimentation, is investigated. The dynamics of non-inertial sedimenting particles is shown to be chaotic, under the combined effect of gravity and of the circular displacement of the vortices. This phenomenon is very sensitive to particle inertia, if any. By using nearly hamiltonian dynamical system theory for the particle motion equation written in the rotating reference frame, one can show that small inertia terms of the particle motion equation strongly modify the Melnikov function of the homoclinic trajectories and heteroclinic cycles of the unperturbed system, as soon as the particle response time is of the order of the settling time (Froude number of order unity). The critical Froude number above which chaotic motion vanishes and a regular centrifugation takes place is obtained from this Melnikov analysis and compared to numerical simulations. Particles with a finite inertia, and in the abs...

  1. The stratospheric arrival pair in infrasound propagation.

    Science.gov (United States)

    Waxler, Roger; Evers, Läslo G; Assink, Jelle; Blom, Phillip

    2015-04-01

    The ideal case of a deep and well-formed stratospheric duct for long range infrasound propagation in the absence of tropospheric ducting is considered. A canonical form, that of a pair of arrivals, for ground returns of impulsive signals in a stratospheric duct is determined. The canonical form is derived from the geometrical acoustics approximation, and is validated and extended through full wave modeling. The full caustic structure of the field of ray paths is found and used to determine phase relations between the contributions to the wavetrain from different propagation paths. Finally, comparison with data collected from the 2005 fuel gas depot explosion in Buncefield, England is made. The correspondence between the theoretical results and the observations is shown to be quite good. PMID:25920837

  2. Pairing in bulk nuclear matter beyond BCS

    CERN Document Server

    Ding, D; Dickhoff, W H; Dussan, H; Rios, A; Polls, A

    2014-01-01

    The influence of short-range correlations on the spectral distribution of neutrons is incorporated in the solution of the gap equation for the ${}^3P_2-{}^3F_2$ coupled channel in pure neutron matter. This effect is studied for different realistic interactions including one based on chiral perturbation theory. The gap in this channel vanishes at all relevant densities due to the treatment of these correlations. We also consider the effect of long-range correlations by including polarization terms in addition to the bare interaction which allow the neutrons to exchange density and spin fluctuations governed by the strength of Landau parameters allowed to have reasonable values consistent with the available literature. Preliminary results indicate that reasonable values of these parameters do not generate a gap in the ${}^3P_2-{}^3F_2$ coupled channel either for all three realistic interactions although the pairing interaction becomes slightly more attractive.

  3. Diagonal lattices and rootless $EE_8$ pairs

    CERN Document Server

    Griess, Robert L; Lam, Ching Hung

    2011-01-01

    Let E be an integral lattice. We first discuss some general properties of an SDC lattice, i.e., a sum of two diagonal copies of E in E \\bot E. In particular, we show that its group of isometries contains a wreath product. We then specialize this study to the case of E = E_8 and provide a new and fairly natural model for those rootless lattices which are sums of a pair of EE_8-lattices. This family of lattices was classified in [7]. We prove that this set of isometry types is in bijection with the set of conjugacy classes of rootless elements in the isometry group O(E_8), i.e., those h \\in O(E_8) such that the sublattice (h - 1)E_8 contains no roots. Finally, our model gives new embeddings of several of these lattices in the Leech lattice.

  4. Ultracompact quantum splitter of degenerate photon pairs

    CERN Document Server

    He, Jiakun; Casas-Bedoya, Alvaro; Zhang, Yanbing; Xiong, Chunle; Eggleton, Benjamin J

    2015-01-01

    Integrated sources of indistinguishable photons have attracted a lot of attention because of their applications in quantum communication and optical quantum computing. Here, we demonstrate an ultra-compact quantum splitter for degenerate single photons based on a monolithic chip incorporating Sagnac loop and a micro-ring resonator with a footprint of 0.011 mm2, generating and deterministically splitting indistinguishable photon pairs using time-reversed Hong-Ou-Mandel interference. The ring resonator provides enhanced photon generation rate, and the Sagnac loop ensures the photons travel through equal path lengths and interfere with the correct phase to enable the reversed HOM effect to take place. In the experiment, we observed a HOM dip visibility of 94.5 +- 3.3 %, indicating the photons generated by the degenerate single photon source are in a suitable state for further integration with other components for quantum applications, such as controlled-NOT gates.

  5. Dual Origin of Pairing in Nuclei

    CERN Document Server

    Idini, A; Barranco, F; Vigezzi, E; Broglia, R A

    2014-01-01

    An essentially "complete" description of the low-energy nuclear structure of the superfluid nucleus $^{120}$Sn and of its odd-$A$ neighbors is provided by the observations carried out with the help of Coulomb excitation and of one-- and of two-- particle transfer reactions, specific probes of vibrations, quasiparticle and pairing degrees of freedom respectively, and of their mutual couplings. These experimental findings are used to stringently test the predictions of a similarly "complete" description of $^{119,120,121}$Sn carried out in terms of elementary modes of excitation which, through their interweaving, melt together into effective fields, each displaying properties reflecting that of all others, there individuality resulting from the actual relative importance of each one. Its implementation is done by solving the Nambu-Gor'kov equations including, for the first time, all medium polarization effects resulting from the interweaving of quasiparticles, spin and surface vibrations, taking into account, w...

  6. Electroweak boson pair production at the Tevatron

    International Nuclear Information System (INIS)

    Preliminary results from CDF and D OE on Wγ, Zγ and WW, WZ, ZZ boson pair production in √s = 1.8 TeV anti p-p collisions from the 1992--93 collider run are presented. Direct limits on CP-conserving and CP-violating WWγ, WWZ, ZZγ and Zγγ anomalous couplings have been obtained. The results are consistent with Standard Model expectations. In the static limit, the direct experimental limits on WWγ and ZZγ anomalous couplings are related to bounds on the higher-order static (transition) EM moments of the W(Z) bosons. Expectations from the on-going and future Tevatron collider runs are discussed

  7. Authenticating Tripartite Key Agreement Protocol with Pairings

    Institute of Scientific and Technical Information of China (English)

    Sheng-Li Liu; Fang-Guo Zhang; Ke-Fei Chen

    2004-01-01

    In this paper, an authenticated tripartite key agreement protocol is proposed, which is an ID-based one with pairings. This protocol involves only one round. The authenticity of the protocol is assured by a special signature scheme, so that messages carrying the information of two ephemeral keys can be broadcasted authentically by an entity. Consequently, one instance of the protocol results in eight session keys for three entities. In other word, one instance of the protocol generates a session key, which is eight times longer than those obtained from traditional key agreement protocols. Security attributes of the protocol are presented, and the computational overhead and bandwidth of the broadcast messages are analyzed as well.

  8. Stability and size of particle pairs in complex plasmas

    Energy Technology Data Exchange (ETDEWEB)

    Nosenko, V., E-mail: V.Nosenko@dlr.de [Deutsches Zentrum für Luft- und Raumfahrt, Forschungsgruppe Komplexe Plasmen, D-82234 Weßling (Germany); Max-Planck-Institut für extraterrestrische Physik, D-85741 Garching (Germany); Ivlev, A. V.; Kompaneets, R. [Max-Planck-Institut für extraterrestrische Physik, D-85741 Garching (Germany); Morfill, G. [Max-Planck-Institut für extraterrestrische Physik, D-85741 Garching (Germany); Centre for Plasma Science and Technology, BMSTU, Moscow (Russian Federation)

    2014-11-15

    Particle pairing in a complex plasma was experimentally studied with the emphasis on pair spatial extent and stability. Micron-size particles were suspended in the (pre)sheath area above the lower electrode in a capacitively coupled radio-frequency discharge in argon. They formed vertical pairs due to the ion wakes created by the flow of ions past particles. We discuss the confinement mechanism for the lower particle, resulting from a combination of the wake field and the field of non-uniform sheath. A model of particle pairs is proposed, which provides good description for the dependence of pair size and stability on experimental parameters.

  9. Scheduler for multiprocessor system switch with selective pairing

    Energy Technology Data Exchange (ETDEWEB)

    Gara, Alan; Gschwind, Michael Karl; Salapura, Valentina

    2015-01-06

    System, method and computer program product for scheduling threads in a multiprocessing system with selective pairing of processor cores for increased processing reliability. A selective pairing facility is provided that selectively connects, i.e., pairs, multiple microprocessor or processor cores to provide one highly reliable thread (or thread group). The method configures the selective pairing facility to use checking provide one highly reliable thread for high-reliability and allocate threads to corresponding processor cores indicating need for hardware checking. The method configures the selective pairing facility to provide multiple independent cores and allocate threads to corresponding processor cores indicating inherent resilience.

  10. Pairing reentrance in warm rotating $^{104}$Pd nucleus

    CERN Document Server

    Hung, N Quang; Agrawal, B K; Datar, V M; Mitra, A; Chakrabarty, D R

    2015-01-01

    Pairing reentrance phenomenon in the warm rotating $^{104}$Pd nucleus is studied within the Bardeen-Cooper-Schrieffer (BCS)-based approach (the FTBCS1). The theory takes into account the effect of quasiparticle number fluctuations on the pairing field at finite temperature and angular momentum within the pairing model plus noncollective rotation along the symmetry axis. The numerical calculations for the pairing gaps and nuclear level densities (NLD), of which an anomalous enhancement has been experimentally observed at low excitation energy $E^*$ and high angular momentum $J$, show that the pairing reentrance is seen in the behavior of pairing gap obtained within the FTBCS1 at low $E$ and high $J$. This leads to the enhancement of the FTBCS1 level densities, in good agreement with the experimental observation. This agreement indicates that the observed enhancement of the NLD might be the first experimental detection of the pairing reentrance in a finite nucleus.

  11. Mean-field plus various types of pairing interactions and an exact boson mapping of the reduced BCS pairing interaction

    International Nuclear Information System (INIS)

    Exact solutions of Nilsson mean-field plus various type of pairing interactions are briefly reviewed. Some even-odd mass differences and moment of inertia of low-lying states for rare earth and actinide nuclei calculated in nearest-orbit pairing and extended pairing models and comparison with the corresponding experimental data are shown. An exact boson mapping of the reduced BCS pairing Hamiltonian is reported. In the mapping, fermion pair operators are mapped exactly to the corresponding bosons. The image of the mapping results in a Bose-Hubbard model with level dependent hopping. (author)

  12. Intergenic DNA sequences flanking the pseudo alpha globin genes of human and chimpanzee.

    OpenAIRE

    Sawada, I; Beal, M P; Shen, C K; Chapman, B.; Wilson, A C; Schmid, C.

    1983-01-01

    We have determined the sequence of 2400 base pairs upstream from the human pseudo alpha globin (psi alpha) gene, and for comparison, 1100 base pairs of DNA within and upstream from the chimpanzee psi alpha gene. The region upstream from the promoter of the psi alpha gene shows no significant homology to the intergenic regions of the adult alpha 2 and alpha 1 globin genes. The chimpanzee gene has a coding defect in common with the human psi alpha gene, showing that the product of this gene, if...

  13. Derivative chromosome 1 and GLUT1 deficiency syndrome in a sibling pair

    Directory of Open Access Journals (Sweden)

    Akarsu Nurten

    2010-05-01

    Full Text Available Abstract Background Genomic imbalances constitute a major cause of congenital and developmental abnormalities. GLUT1 deficiency syndrome is caused by various de novo mutations in the facilitated human glucose transporter 1 gene (1p34.2 and patients with this syndrome have been diagnosed with hypoglycorrhachia, mental and developmental delay, microcephaly and seizures. Furthermore, 1q terminal deletions have been submitted in the recent reports and the absence of corpus callosum has been related to the deletion between C1orf100 and C1orf121 in 1q44. Results This study reports on a sibling pair with developmental delay, mental retardation, microcephaly, hypotonia, epilepsy, facial dysmorphism, ataxia and impaired speech. Chromosome analysis revealed a derivative chromosome 1 in both patients. FISH and MCB analysis showed two interstitial deletions at 1p34.2 and 1q44. SNP array and array-CGH analysis also determined the sizes of deletions detailed. The deleted region on 1p34.2 encompasses 33 genes, among which is GLUT1 gene (SLC2A1. However, the deleted region on 1q44 includes 59 genes and distal-proximal breakpoints were located in the ZNF672 gene and SMYD3 gene, respectively. Conclusion Haploinsufficiency of GLUT1 leads to GLUT1 deficiency syndrome, consistent with the phenotype in patients of this study. Conversely, in the deleted region on 1q44, none of the genes are related to findings in these patients. Additionally, the results confirm previous reports on that corpus callosal development may depend on the critical gene(s lying in 1q44 proximal to the SMYD3 gene.

  14. Mating strategies in dominant meerkats: evidence for extra-pair paternity in relation to genetic relatedness between pair mates.

    Science.gov (United States)

    Leclaire, S; Nielsen, J F; Sharp, S P; Clutton-Brock, T H

    2013-07-01

    Rates of extra-pair paternity (EPP) have frequently been associated with genetic relatedness between social mates in socially monogamous birds. However, evidence is limited in mammals. Here, we investigate whether dominant females use divorce or extra-pair paternity as a strategy to avoid the negative effects of inbreeding when paired with a related male in meerkats Suricata suricatta, a species where inbreeding depression is evident for several traits. We show that dominant breeding pairs seldom divorce, but that rates of EPP are associated with genetic similarity between mates. Although extra-pair males are no more distantly related to the female than social males, they are more heterozygous. Nevertheless, extra-pair pups are not more heterozygous than within-pair pups. Whether females benefit from EPP in terms of increased fitness of the offspring, such as enhanced survival or growth, requires further investigations. PMID:23675879

  15. ssDNA Pairing Accuracy Increases When Abasic Sites Divide Nucleotides into Small Groups.

    Directory of Open Access Journals (Sweden)

    Alexandra Peacock-Villada

    Full Text Available Accurate sequence dependent pairing of single-stranded DNA (ssDNA molecules plays an important role in gene chips, DNA origami, and polymerase chain reactions. In many assays accurate pairing depends on mismatched sequences melting at lower temperatures than matched sequences; however, for sequences longer than ~10 nucleotides, single mismatches and correct matches have melting temperature differences of less than 3°C. We demonstrate that appropriately grouping of 35 bases in ssDNA using abasic sites increases the difference between the melting temperature of correct bases and the melting temperature of mismatched base pairings. Importantly, in the presence of appropriately spaced abasic sites mismatches near one end of a long dsDNA destabilize the annealing at the other end much more effectively than in systems without the abasic sites, suggesting that the dsDNA melts more uniformly in the presence of appropriately spaced abasic sites. In sum, the presence of appropriately spaced abasic sites allows temperature to more accurately discriminate correct base pairings from incorrect ones.

  16. Structures and Energetics of Four Adjacent G·U Pairs That Stabilize an RNA Helix.

    Science.gov (United States)

    Gu, Xiaobo; Mooers, Blaine H M; Thomas, Leonard M; Malone, Joshua; Harris, Steven; Schroeder, Susan J

    2015-10-22

    Consecutive G·U base pairs inside RNA helices can be destabilizing, while those at the ends of helices are thermodynamically stabilizing. To determine if this paradox could be explained by differences in base stacking, we determined the high-resolution (1.32 Å) crystal structure of (5'-GGUGGCUGUU-3')2 and studied three sequences with four consecutive terminal G·U pairs by NMR spectroscopy. In the crystal structure of (5'-GGUGGCUGUU-3')2, the helix is overwound but retains the overall features of A-form RNA. The penultimate base steps at each end of the helix have high base overlap and contribute to the unexpectedly favorable energetic contribution for the 5'-GU-3'/3'-UG-5' motif in this helix position. The balance of base stacking and helical twist contributes to the positional dependence of G·U pair stabilities. The energetic stabilities and similarity to A-form RNA helices suggest that consecutive G·U pairs would be recognized by RNA helix binding proteins, such as Dicer and Ago. Thus, these results will aid future searches for target sites of small RNAs in gene regulation. PMID:26425937

  17. Conditional targeting of Ispd using paired Cas9 nickase and a single DNA template in mice

    Directory of Open Access Journals (Sweden)

    Angus Yiu-fai Lee

    2014-01-01

    Full Text Available CRISPR/Cas9 technology is a highly promising genome editing tool in the mouse, potentially overcoming the costs and time required for more traditional gene targeting methods in embryonic stem (ES cells. Recently, compared to the wildtype nuclease, paired Cas9 nickase (Cas9n combined with single guide RNA (sgRNA molecules has been found to enhance the specificity of genome editing while reducing off-target effects. Paired Cas9n has been shown to be as efficient as Cas9 for generating insertion and deletion (indel mutations by non-homologous end joining and targeted deletion in the genome. However, an efficient and reliable approach to the insertion of loxP sites flanking critical exon(s to create a conditional allele of a target gene remains an elusive goal. In this study, we microinjected Cas9n RNA with sgRNAs together with a single DNA template encoding two loxP sites flanking (floxing exon 2 of the isoprenoid synthase containing domain (Ispd into the pronucleus and cytoplasm of C57BL/6NCr one-cell stage zygotes. After surgical transfer, one F0 mouse expressing a conditional allele was produced (at a frequency of ∼8% of live pups born. The floxed allele was transmitted through the germline to F1 progeny, and could be successfully recombined using Cre recombinase. This study indicates that conditional targeting can be accomplished effectively using paired Cas9n and a single DNA template.

  18. Les livres pairs d’Alfred Jarry

    Directory of Open Access Journals (Sweden)

    Julien Schuh

    2008-10-01

    Full Text Available Dans les Gestes et opinions du Dr Faustroll, pataphysicien, Alfred Jarry décrit une bibliothèque idéale, composée de 27 ouvrages qu’il nomme mystérieusement des « livres pairs ». Dans cette liste, on trouve aussi bien des œuvres canoniques du symbolisme (Mallarmé, Verlaine, Poe traduit par Baudelaire, des titres des amis de Jarry et des piliers des revues de l’époque (Rachilde, Gustave Kahn, Léon Bloy, que des ouvrages que l’on assimile davantage aux lectures enfantines (un conte de Marceline Desbordes-Valmore, les Mille et une Nuits, le théâtre de Florian ou des textes hors-catégorie (l’œuvre de Rabelais, l’évangile de Luc, les Chants de Maldoror. Beaucoup de critiques se sont interrogés sur la notion de « parité », sur l’égalité supposée entre ces ouvrages n’appartenant pas aux mêmes catégories littéraires. Mais l’intérêt de cette liste n’est pas de fournir un classement, ou d’affirmer l’équivalence de toutes les formes textuelles, comme on l’analyse souvent, en faisant de Jarry un chantre du nihilisme qui chercherait à pervertir les hiérarchies littéraires pour montrer la vacuité du sens. Au contraire, en faisant débuter le Faustroll par une liste d’ouvrages, Jarry met en place les conditions de réception de son texte, dans une posture très littéraire. L’espace délimité par la liste des auteurs pairs fonctionne comme un portrait spirituel de Jarry-littérateur, et livre le contexte selon lequel son discours doit être reçu. La bibliothèque du Dr Faustroll fixe les références que le lecteur pourra voir convoquer dans le texte, et circonscrit l’espace littéraire dans lequel peut fonctionner cet ouvrage.

  19. Natural versus artificial creation of base pairs in DNA: origin of nucleobases from the perspectives of unnatural base pair studies.

    Science.gov (United States)

    Hirao, Ichiro; Kimoto, Michiko; Yamashige, Rie

    2012-12-18

    Since life began on Earth, the four types of bases (A, G, C, and T(U)) that form two sets of base pairs have remained unchanged as the components of nucleic acids that replicate and transfer genetic information. Throughout evolution, except for the U to T modification, the four base structures have not changed. This constancy within the genetic code raises the question of how these complicated nucleotides were generated from the molecules in a primordial soup on the early Earth. At some prebiotic stage, the complementarity of base pairs might have accelerated the generation and accumulation of nucleotides or oligonucleotides. We have no clues whether one pair of nucleobases initially appeared on the early Earth during this process or a set of two base pairs appeared simultaneously. Recently, researchers have developed new artificial pairs of nucleobases (unnatural base pairs) that function alongside the natural base pairs. Some unnatural base pairs in duplex DNA can be efficiently and faithfully amplified in a polymerase chain reaction (PCR) using thermostable DNA polymerases. The addition of unnatural base pair systems could expand the genetic alphabet of DNA, thus providing a new mechanism for the generation novel biopolymers by the site-specific incorporation of functional components into nucleic acids and proteins. Furthermore, the process of unnatural base pair development might provide clues to the origin of the natural base pairs in a primordial soup on the early Earth. In this Account, we describe the development of three representative types of unnatural base pairs that function as a third pair of nucleobases in PCR and reconsider the origin of the natural nucleic acids. As researchers developing unnatural base pairs, they use repeated "proof of concept" experiments. As researchers design new base pairs, they improve the structures that function in PCR and eliminate those that do not. We expect that this process is similar to the one functioning in the

  20. Observing Pair-Work Task in an English Speaking Class

    Directory of Open Access Journals (Sweden)

    Diana Achmad

    2014-01-01

    Full Text Available This paper reports on students’ pair-work interactions to develop their speaking skills in an ELT classroom which consisted of international learners. A number of 16 learners of intermediate proficiency with IELTS score band 5.5 were observed. The teacher had paired those he considered among them to be the more competent ones (hereafter, stronger with the less competent ones (hereafter, weaker; therefore, eight pairs were observed during the lesson. The task given to the students was to express ‘Agree and Disagree’ in the context of giving opinions related to social life. Based on the observations, the task was successfully implemented by six pairs; thus, the two others faced some problems. From the first pair, it was seen that the stronger student had intimated the weaker one into speaking during the task. The other pair, who was both of the same native, did not converse in English as expected and mostly used their native language to speak with one another presumably due to respect from the stronger student towards the weaker one. In situations like this, when pair-work becomes unproductive, rotating pairs is recommended to strengthen information sharing and assigning roles to avoid a student from taking over the activity from his or her pair. In conclusion, pairing international learners with mixed speaking proficiency by teachers must be conducted as effectively as possible by initially identifying their ability and learning culture to profoundly expand the students’ language resources.

  1. Beamlike photon pairs entangled by a 2x2 fiber

    International Nuclear Information System (INIS)

    Polarization-entangled photon pairs have been widely used as a light source of quantum communication. The polarization-entangled photon pairs are generally obtained at the crossing points of the light cones that are generated from a type-II nonlinear crystal. However, it is hard to pick up the photon pairs coming out from the crossing points because of their invisible wavelength and low intensity. In our previous work, we succeeded in generating polarization-entangled photon pairs by overlapping two light paths for the photon-pair generation. The photon pairs could be entangled in all of the generated photon pairs without clipping the crossing points, even with some difficulty in its alignment to overlap the two light paths. In this paper, we have developed an optical system which generates polarization-entangled photon pairs using a beamlike photon pair, without the difficulty in alignment. The measured results show that the photon pairs generated in the system are entangled in their polarizations.

  2. Pair Triplet Association Rule Generation in Streams

    Directory of Open Access Journals (Sweden)

    Manisha Thool

    2013-08-01

    Full Text Available Many applications involve the generation and analysis of a new kind of data, called stream data, where data flows in and out of an observation platform or window dynamically. Such data streams have the unique features such as huge or possibly infinite volume, dynamically changing, flowing in or out in a fixed order, allowing only one or a small number of scans. An important problem in data stream mining is that of finding frequent items in the stream. This problem finds application across several domains such as financial systems, web traffic monitoring, internet advertising, retail and e-business. This raises new issues that need to be considered when developing association rule mining technique for stream data. The Space-Saving algorithm reports both frequent and top-k elements with tight guarantees on errors. We also develop the notion of association rules in streams of elements. The Streaming-Rules algorithm is integrated with Space-Saving algorithm to report 1-1 association rules with tight guarantees on errors, using minimal space, and limited processing per element and we are using Apriori algorithm for static datasets and generation of association rules and implement Streaming-Rules algorithm for pair, triplet association rules. We compare the top- rules of static datasets with output of stream datasets and find percentage of error.

  3. An Identity Based Aggregate Signature from Pairings

    Directory of Open Access Journals (Sweden)

    Yike Yu

    2011-04-01

    Full Text Available An aggregate signature is a useful digital signature that supports aggregation: Given n signatures on n distinct messages from n distinct users, aggregate signature scheme is possible to aggregate all these signature into a single short signature. This single signature, along with the n original messages will convince any verifier that the n users did indeed sign the n original messages respectively (i.e., for i=1,...,n user i signed message  mi. In this paper, we propose an identity based aggregate signature scheme which requires constant pairing operations in the verification and the size of aggregate signature is independent of the number of signers. We prove that the proposed signature scheme is secure against existential forgery under adaptively chosen message and identity attack in the random oracle model assuming the intractability of the computational Diffie-Hellman problem.

  4. Unifying projected entangled pair state contractions

    International Nuclear Information System (INIS)

    The approximate contraction of a tensor network of projected entangled pair states (PEPS) is a fundamental ingredient of any PEPS algorithm, required for the optimization of the tensors in ground state search or time evolution, as well as for the evaluation of expectation values. An exact contraction is in general impossible, and the choice of the approximating procedure determines the efficiency and accuracy of the algorithm. We analyze different previous proposals for this approximation, and show that they can be understood via the form of their environment, i.e. the operator that results from contracting part of the network. This provides physical insight into the limitation of various approaches, and allows us to introduce a new strategy, based on the idea of clusters, that unifies previous methods. The resulting contraction algorithm interpolates naturally between the cheapest and most imprecise and the most costly and most precise method. We benchmark the different algorithms with finite PEPS, and show how the cluster strategy can be used for both the tensor optimization and the calculation of expectation values. Additionally, we discuss its applicability to the parallelization of PEPS and to infinite systems

  5. AGT, Burge pairs and minimal models

    CERN Document Server

    Bershtein, M

    2014-01-01

    We consider the AGT correspondence in the context of the conformal field theory M^{p, p'} x M^H, where M^{p, p'} is the minimal model based on the Virasoro algebra V^{p, p'} labeled by two co-prime integers {p, p'}, 1 < p < p', and M^H is the free boson theory based on the Heisenberg algebra H. Using Nekrasov's instanton partition functions without modification to compute conformal blocks in M^{p, p'} x M^H leads to ill-defined or incorrect expressions. Let B^{p, p', H}_n be a conformal block in M^{p, p'} x M^H, with n consecutive channels \\chi_{\\i}, \\i = 1, ..., n, and let \\chi_{\\i} carry states from H^{p, p'}_{r_{\\i}, s_{\\i}} x F, where H^{p, p'}_{r_{\\i}, s_{\\i}} is an irreducible highest-weight V^{p, p'}-representation, labeled by two integers {r_{\\i}, s_{\\i}}, 0 < r_{\\i} < p, 0 < s_{\\i} < p', and F is the Fock space of H. We show that restricting the states that flow in \\chi_{\\i}, \\i = 1, ..., n, to states labeled by partition pairs {Y_1^{\\i}, Y_2^{\\i}} that satisfy Y^{\\i, T}_{2, \\sigma}...

  6. Particle Acceleration in Pair-Starved Pulsars

    CERN Document Server

    Harding, A G M A K

    2004-01-01

    We investigate the physical situation above the pulsar polar cap (PC) where the accelerating primaries (electrons) are not capable of producing sufficient numbers of electron-positron pairs at low altitudes (within 1-2 stellar radii above the PC surface) to screen the accelerating electric field, and continue accelerating up to, at least, very high altitudes nearly approaching the light cylinder. We derive an analytic solution for the parallel electric field valid at high altitudes. The solution is based on the physical condition of asymptotic vanishing of the rotationally induced transverse electric field within the magnetic flux tube. This condition constrains the asymptotic value of the effective space charge that determines the distribution of the parallel electric field within the magnetic tube. Our estimates of low- to high-altitude values of the parallel electric field imply the occurrence of a regime of primary acceleration (with the characteristic Lorentz factor up to 1-2 X 10^7) all the way from the...

  7. Investigation of tau pair production at PETRA

    International Nuclear Information System (INIS)

    The reaction e+e- -> tau+tau- has been measured at center of mass energies around 34 GeV. The selection is sensitive to 93% of the tau pair decays, thus making possible a high identification efficiency of proportional 70% over a large solid angle. The total cross section has been measured to Rsub(tau) = sigmasub(tautau)/sigmasub(point) = .94 +- .06(stat.) +- .06(syst.). In the differential cross section a charge asymmetry of Asub(tau) = (-(9.0 +- 6.6)% was observed, corresponding to a tau axial vector coupling to the weak neutral current of asub(tau) = -.94 +- 0.69. Moreover, final states from the decays tau -> πν, tau -> eνν, and tau -> μνν have been isolated and branching ratios into these channels have been determined. From the inclusive momentum spectra of the observed decay products (including the channel tau -> rhoν) the forward backward asymmetry of tau polarization has been determined to Asub(p,tau) = -(1 +- 22)% which corresponds to vsub(tau) = -.1 +- 2.9. Tests on factorization are discussed. (orig.)

  8. Nebular spectra of pair-instability supernovae

    CERN Document Server

    Jerkstrand, A; Heger, A

    2015-01-01

    If very massive stars (M >~ 100 Msun) can form and avoid too strong mass loss during their evolution, they are predicted to explode as pair-instability supernovae (PISNe). One critical test for candidate events is whether their nucleosynthesis yields and internal ejecta structure, being revealed through nebular-phase spectra at t >~ 1 yr, match those of model predictions. Here we compute theoretical spectra based on model PISN ejecta at 1-3 years post-explosion to allow quantitative comparison with observations. The high column densities of PISNe lead to complete gamma-ray trapping for t >~ 2 years which, combined with fulfilled conditions of steady state, leads to bolometric supernova luminosities matching the 56Co decay. Most of the gamma-rays are absorbed by the deep-lying iron and silicon/sulphur layers. The ionization balance shows a predominantly neutral gas state, which leads to emission lines of Fe I, Si I, and S I. For low-mass PISNe the metal core expands slowly enough to produce a forest of distinc...

  9. Spin polarization transfer by the radical pair mechanism

    Energy Technology Data Exchange (ETDEWEB)

    Zarea, Mehdi, E-mail: m-zarea@northwestern.edu; Ratner, Mark A.; Wasielewski, Michael R. [Department of Chemistry and Argonne-Northwestern Solar Energy Research (ANSER) Center, Northwestern University, Evanston, Illinois 60208-3113 (United States)

    2015-08-07

    In a three-site representation, we study a spin polarization transfer from radical pair spins to a nearby electron or nuclear spin. The quantum dynamics of the radical pair spins is governed by a constant exchange interaction between the radical pair spins which have different Zeeman frequencies. Radical pair spins can recombine to the singlet ground state or to lower energy triplet states. It is then shown that the coherent dynamics of the radical pair induces spin polarization on the nearby third spin in the presence of a magnetic field. The spin polarization transfer depends on the difference between Zeeman frequencies, the singlet and triplet recombination rates, and on the exchange and dipole-dipole interactions between the different spins. In particular, the sign of the polarization depends on the exchange coupling between radical pair spins and also on the difference between singlet and triplet recombination rate constants.

  10. Analysis of food pairing in regional cuisines of India

    CERN Document Server

    Jain, Anupam; Bagler, Ganesh

    2015-01-01

    Any national cuisine is a sum total of its variety of regional cuisines, which are the cultural and historical identifiers of their respective regions. India is home to a number of regional cuisines that showcase its culinary diversity. Here, we study recipes from eight different regional cuisines of India spanning various geographies and climates. We investigate the phenomenon of food pairing which examines compatibility of two ingredients in a recipe in terms of their shared flavor compounds. Food pairing was enumerated at the level of cuisine, recipes as well as ingredient pairs by quantifying flavor sharing between pairs of ingredients. Our results indicate that each regional cuisine follows negative food pairing pattern; more the extent of flavor sharing between two ingredients, lesser their co-occurrence in that cuisine. We find that frequency of ingredient usage is central in rendering the characteristic food pairing in each of these cuisines. Spice and dairy emerged as the most significant ingredient ...

  11. Diffraction of collinear correlated photon pairs by an ultrasonic wave

    CERN Document Server

    Kwiek, Piotr

    2013-01-01

    The phenomenon of collinear photon pairs diffraction by an ultrasonic wave is investigated for Bragg incidence. A BBO crystal was used for producing collinear correlated photon pairs via type-I spontaneous parametric down-conversion. The experimental setup for diffraction of collinear correlated photon pairs was tested based on Malus' law for pairs of photons. The obtained results do not support the L. B. Deng's theory of 2012, presented in his work entitled "Diffraction of entangled photon pairs by ultrasonic waves" [Front. Phys. 7, 239 (2012)] . An alternative simple theoretical description of interaction of collinear photon pairs with ultrasonic waves is shown in the present paper which reveals very good agreement with corresponding experimental data.

  12. Water-Mediated Ion Pairing: Occurrence and Relevance

    DEFF Research Database (Denmark)

    van der Vegt, Nico F.A.; Haldrup, Kristoffer; Roke, Sylvie;

    2016-01-01

    We present an overview of the studies of ion pairing in aqueous media of the past decade. In these studies, interactions between ions, and between ions and water, are investigated with relatively novel approaches, including dielectric relaxation spectroscopy, far-infrared (terahertz) absorption...... spectroscopy, femtosecond mid-infrared spectroscopy, and X-ray spectroscopy and scattering, as well as molecular dynamics simulation methods. With these methods, it is found that ion pairing is not a rare phenomenon only occurring for very particular, strongly interacting cations and anions. Instead, for many...... salt solutions and their interfaces, the measured and calculated structure and dynamics reveal the presence of a distinct concentration of contact ion pairs (CIPs), solvent shared ion pairs (SIPs), and solvent-separated ion pairs (2SIPs). We discuss the importance of specific ion-pairing interactions...

  13. Spin polarization transfer by the radical pair mechanism

    International Nuclear Information System (INIS)

    In a three-site representation, we study a spin polarization transfer from radical pair spins to a nearby electron or nuclear spin. The quantum dynamics of the radical pair spins is governed by a constant exchange interaction between the radical pair spins which have different Zeeman frequencies. Radical pair spins can recombine to the singlet ground state or to lower energy triplet states. It is then shown that the coherent dynamics of the radical pair induces spin polarization on the nearby third spin in the presence of a magnetic field. The spin polarization transfer depends on the difference between Zeeman frequencies, the singlet and triplet recombination rates, and on the exchange and dipole-dipole interactions between the different spins. In particular, the sign of the polarization depends on the exchange coupling between radical pair spins and also on the difference between singlet and triplet recombination rate constants

  14. Pairing Nambu-Goldstone Modes within Nuclear Density Functional Theory

    Science.gov (United States)

    Hinohara, Nobuo; Nazarewicz, Witold

    2016-04-01

    We show that the Nambu-Goldstone formalism of the broken gauge symmetry in the presence of the T =1 pairing condensate offers a quantitative description of the binding-energy differences of open-shell superfluid nuclei. We conclude that the pairing-rotational moments of inertia are excellent pairing indicators, which are free from ambiguities attributed to odd-mass systems. We offer a new, unified interpretation of the binding-energy differences traditionally viewed in the shell model picture as signatures of the valence nucleon properties. We present the first systematic analysis of the off-diagonal pairing-rotational moments of inertia and demonstrate the mixing of the neutron and proton pairing-rotational modes in the ground states of even-even nuclei. Finally, we discuss the importance of mass measurements of neutron-rich nuclei for constraining the pairing energy density functional.

  15. Pairing Nambu-Goldstone modes within nuclear density functional theory

    CERN Document Server

    Hinohara, Nobuo

    2016-01-01

    We show that the Nambu-Goldstone formalism of the broken gauge symmetry in the presence of the $T=1$ pairing condensate offers a quantitative description of the binding energy differences of open-shell superfluid nuclei. We conclude that the pairing rotational moments of inertia are excellent pairing indicators, which are free from ambiguities attributed to odd-mass systems. We offer a new, unified interpretation of the binding-energy differences traditionally viewed in the shell model picture as signatures of the valence nucleon properties. We present the first systematic analysis of the off-diagonal pairing rotational moments of inertia, and demonstrate the mixing of the neutron and proton pairing rotational modes in the ground states of even-even nuclei. Finally, we discuss the importance of mass measurements of neutron-rich nuclei for constraining the pairing energy density functional.

  16. Classes of source pairs in interference and diffraction

    CERN Document Server

    Castaneda, R

    2003-01-01

    A description of interference and diffraction based on the concept of class of source pairs is presented. It is the set of pairs of sources whose contributions to the interference or diffraction patterns exhibit the same phase difference. Each class of source pairs provides a specific cosine-like modulation on the intensity distribution of pattern, in such a way that the set provides an expansion of the intensity distribution of the pattern in an orthogonal basis. From this point of view, the classes of source pairs are the effective elementary sources for those intensity distributions. The characteristics of the classes of source pairs can be accurately determined by Fourier transforming the intensity distribution of the patterns. The central value of this Fourier spectrum is related to the number of individual sources. The remaining values will provide two crucial descriptors of the classes: their positions on the Fourier transform domain will be corresponding to the separation vector of the class of pairs ...

  17. Paired teaching for faculty professional development in teaching

    CERN Document Server

    Stang, Jared B

    2015-01-01

    Paired (or co-)teaching is an arrangement in which two faculty are collaboratively responsible for all aspects of teaching a course. By pairing an instructor experienced in research-based instructional strategies (RBIS) with an instructor with little or no experience in RBIS, paired teaching can be used to promote the adoption of RBIS. Using data from post-course interviews with the novice instructors of four such arrangements, we seek to understand the factors that make for effective professional development in teaching via paired teaching. Learning about teaching for the novice instructors was found to be mediated both by the approach of the novice instructor to the paired teaching and the previous teaching experience of the novice instructor. Additionally, the structure of the pair-taught course and the sequence of teaching assignments for the novice instructor both play roles in lowering the barrier to novice instructors adopting RBIS.

  18. Pair Cascades and Deathlines in Offset Magnetic Dipole Fields

    Science.gov (United States)

    Harding, Alice; Muslimov, Alex

    2010-01-01

    We investigate electron-positron pair cascades in a dipole magnetic field whose axis is offset from the neutron star center. In such a field geometry, the polar cap is displaced from the neutron star symmetry axis and the field line radius of curvature is modified. Using the modified parallel electric field near the polar cap of an offset dipole, we simulate pair cascades to determine the pair deathlines and pair multiplicities as a function of the offset parameter. We find that the pair multiplicity can change dramatically with a modest offset, with a significant increase on one side of the polar cap. Lower pair deathlines allow a larger fraction of the pulsar population, that include old and millisecond pulsars, to produce cascades with high multiplicity.

  19. A CA(+) pair adjacent to a sheared GA or AA pair stabilizes size-symmetric RNA internal loops.

    Science.gov (United States)

    Chen, Gang; Kennedy, Scott D; Turner, Douglas H

    2009-06-23

    RNA internal loops are often important sites for folding and function. Residues in internal loops can have pKa values shifted close to neutral pH because of the local structural environment. A series of RNA internal loops were studied at different pH by UV absorbance versus temperature melting experiments and imino proton nuclear magnetic resonance (NMR). A stabilizing CA pair forms at pH 7 in the CG/AA and CA/AA nearest neighbors when the CA pair is the first noncanonical pair (loop-terminal pair) in 3 x 3 nucleotide and larger size-symmetric internal loops. These CG/AA and CA/AA nearest neighbors, with CA adjacent to a closing Watson-Crick pair, are further stabilized when the pH is lowered from 7 to 5.5. The results are consistent with a significantly larger fraction (from approximately 20% at pH 7 to approximately 90% at pH 5.5) of adenines being protonated at the N1 position to form stabilizing wobble CA+ pairs adjacent to a sheared GA or AA pair. The noncanonical pair adjacent to the GA pair in CG/AA can either stabilize or destabilize the loop, consistent with the sequence-dependent thermodynamics of GA pairs. No significant pH-dependent stabilization is found for most of the other nearest neighbor combinations involving CA pairs (e.g., CA/AG and AG/CA), which is consistent with the formation of various nonwobble pairs observed in different local sequence contexts in crystal and NMR structures. A revised free-energy model, including stabilization by wobble CA+ pairs, is derived for predicting stabilities of medium-size RNA internal loops. PMID:19485416

  20. A genome-wide scan in affected sibling pairs with idiopathic recurrent miscarriage suggests genetic linkage

    DEFF Research Database (Denmark)

    Kolte, Astrid Marie; Nielsen, H S; Moltke, Ida;

    2011-01-01

    Previously, siblings of patients with idiopathic recurrent miscarriage (IRM) have been shown to have a higher risk of miscarriage. This study comprises two parts: (i) an epidemiological part, in which we introduce data on the frequency of miscarriage among 268 siblings of 244 patients with IRM and...... (ii) a genetic part presenting data from a genome-wide linkage study of 38 affected sibling pairs with IRM. All IRM patients (probands) had experienced three or more miscarriages and affected siblings two or more miscarriages. The sibling pairs were genotyped by the Affymetrix GeneChip 50K Xba......I platform and non-parametric linkage analysis was performed via the software package Merlin. We find that siblings of IRM patients exhibit a higher frequency of miscarriage than population controls regardless of age at the time of pregnancy. We identify chromosomal regions with LOD scores between 2.5 and 3...

  1. Mate preference in wild and domesticated (game-farm) mallards: II. Pairing success

    Science.gov (United States)

    Cheng, K.M.; Shoffner, R.N.; Phillips, R.E.; Lee, F.B.

    1979-01-01

    Experiments were designed to determine whether assortative mating occurs in wild and game-farm mallard strains (Anas platyrhynchos). Mallard males of either strain raised with females of their own strain courted females of their own strain more than females of the opposite strain, and these males were only successful in pairing with females of their own strain. Males raised with females of the opposite strain courted wild and game-farm females with equal intensity. They were successful in pairing with females of either strain. While this study does not settle the question of possible gene flow between these two mallard populations, it does indicate that there is a potential barrier to panmixia.

  2. Pair Production In Near Extremal Charged Black Holes

    CERN Document Server

    Chen, Chiang-Mei; Tang, Fu-Yi

    2015-01-01

    We study the spontaneous pair production, including the Schwinger mechanism and the Hawking radiation, of charged scalar and spinor particles from the near horizon region of (near) extremal charged black holes in the probe field limit. The pair production rate and the absorption cross section, as well as the retarded Green's functions of the probe fields are analytically computed. Moreover, the holographic description dual to the pair production is discussed.

  3. Compression of Soliton Pairs in Dispersion-Decreasing Fibres

    Institute of Scientific and Technical Information of China (English)

    CUI Hu; XU Wen-Cheng; LIU Song-Hao

    2004-01-01

    @@ The compression of soliton pairs in fibres with decreasing dispersion is studied. The results show that generation of high-quality stable pedestal-free pulses is strongly affected by the interaction between soliton pairs. The initial phase difference between two solitons can modify soliton interaction and can make the neighbouring solitons never collide periodically. The soliton pairs can be compressed selectively so that one of the two solitons can achieve enhanced compression by controlling the initial phase difference.

  4. Impact of pairing correlations on the orientation of the nuclear

    OpenAIRE

    Zhao, P. W.; Zhang, S.Q.; Meng, J

    2015-01-01

    For the first time, the tilted axis cranking covariant density functional theory with pairing correlations has been formulated and implemented in a fully self-consistent and microscopic way to investigate the evolution of the spin axis and the pairing effects in rotating triaxial nuclei. The measured energy spectrum and transition probabilities for the Nd-135 yrast band are reproduced well without any ad hoc renormalization factors when pairing effects are taken into account. A transition fro...

  5. Paired structures and other opposite-based models

    DEFF Research Database (Denmark)

    Rodríguez, J. Tinguaro; Franco, Camilo; Gómez, Daniel;

    2015-01-01

    In this paper we present a new class of fuzzy sets, paired fuzzy sets, that tries to overcome any conflict between families of fuzzy sets that share a main characteristic: that they are generated from two basic opposite fuzzy sets. Hence, the first issue is to formalize the notion of opposition, ...... viewed as a particular paired structure when the classical fuzzy negation is considered; on the other hand, the relationship of this model with bipolarity is reconsidered from our paired view....

  6. Photon-exchange effects on photon-pair transmission

    OpenAIRE

    Resch, K. J.; Lapaire, G. G.; Lundeen, J. S.; Sipe, J. E.; Steinberg, A. M.

    2003-01-01

    It has been proposed that photon-exchange effects in atom-photon interactions could lead to greatly enhanced optical nonlinearities. These might have widespread application (e.g. quantum information). Here we demonstrate experimentally that such exchange effects can indeed enhance the probability of real absorption of photon pairs. Using nonclassical pairs of photons with variable time separation, we observe a maximum suppression of pair transmission by at least 5% with respect to the result ...

  7. Particle vs. pair condensation in attractive Bose liquids

    OpenAIRE

    Nozières, P.; Saint James, D.

    1982-01-01

    The competition between particle and pair condensation in Bose liquids is studied using a mean field variational ground state that comprises both the Bogoliubov approximation for weakly interacting Bose gases and the Valatin-Butler pair state. We first consider structureless bosons, disregarding the fact that an attractive gas will necessarily collapse. We show that a pair state occurs only if the attraction is strong enough to bind two bosons together. The limit of low densities is treated e...

  8. Single pairs of time-bin entangled photons

    CERN Document Server

    Versteegh, Marijn A M; Berg, Aafke A van den; Juska, Gediminas; Dimastrodonato, Valeria; Gocalinska, Agnieszka; Pelucchi, Emanuele; Zwiller, Val

    2015-01-01

    Time-bin entangled photons are ideal for long-distance quantum communication via optical fibers. Here we present a source where, even at high creation rates, each excitation pulse generates at most one time-bin entangled pair. This is important for the accuracy and security of quantum communication. Our site-controlled quantum dot generates single polarization-entangled photon pairs, which are then converted, without loss of entanglement strength, into single time-bin entangled photon pairs.

  9. Pairing Nambu-Goldstone Modes within Nuclear Density Functional Theory

    OpenAIRE

    Hinohara, Nobuo; Nazarewicz, Witold

    2016-01-01

    We show that the Nambu-Goldstone formalism of the broken gauge symmetry in the presence of the $T=1$ pairing condensate offers a quantitative description of the binding-energy differences of open-shell superfluid nuclei. We conclude that the pairing-rotational moments of inertia are excellent pairing indicators, which are free from ambiguities attributed to odd-mass systems. We offer a new, unified interpretation of the binding-energy differences traditionally viewed in the shell model pictur...

  10. Selecting One of Several Mating Types through Gene Segment Joining and Deletion in Tetrahymena thermophila

    Science.gov (United States)

    Cervantes, Marcella D.; Hamilton, Eileen P.; Xiong, Jie; Lawson, Michael J.; Yuan, Dongxia; Hadjithomas, Michalis; Miao, Wei; Orias, Eduardo

    2013-01-01

    The unicellular eukaryote Tetrahymena thermophila has seven mating types. Cells can mate only when they recognize cells of a different mating type as non-self. As a ciliate, Tetrahymena separates its germline and soma into two nuclei. During growth the somatic nucleus is responsible for all gene transcription while the germline nucleus remains silent. During mating, a new somatic nucleus is differentiated from a germline nucleus and mating type is decided by a stochastic process. We report here that the somatic mating type locus contains a pair of genes arranged head-to-head. Each gene encodes a mating type-specific segment and a transmembrane domain that is shared by all mating types. Somatic gene knockouts showed both genes are required for efficient non-self recognition and successful mating, as assessed by pair formation and progeny production. The germline mating type locus consists of a tandem array of incomplete gene pairs representing each potential mating type. During mating, a complete new gene pair is assembled at the somatic mating type locus; the incomplete genes of one gene pair are completed by joining to gene segments at each end of germline array. All other germline gene pairs are deleted in the process. These programmed DNA rearrangements make this a fascinating system of mating type determination. PMID:23555191

  11. On extensions of wavelet systems to dual pairs of frames

    DEFF Research Database (Denmark)

    Christensen, Ole; Kim, Hong Oh; Kim, Rae Young

    2015-01-01

    It is an open problem whether any pair of Bessel sequences with wavelet structure can be extended to a pair of dual frames by adding a pair of singly generated wavelet systems. We consider the particular case where the given wavelet systems are generated by the multiscale setup with trigonometric...... masks and provide a positive answer under extra assumptions. We also identify a number of conditions that are necessary for the extension to dual (multi-) wavelet frames with any number of generators, and show that they imply that an extension with two pairs of wavelet systems is possible. Along the way...

  12. Excluded volume effect enhances the homology pairing of model chromosomes

    CERN Document Server

    Takamiya, Kazunori; Isami, Shuhei; Nishimori, Hiraku; Awazu, Akinori

    2015-01-01

    To investigate the structural dynamics of the homology pairing of polymers, we mod- eled the scenario of homologous chromosome pairings during meiosis in Schizosaccharomyces pombe, one of the simplest model organisms of eukaryotes. We consider a simple model consist- ing of pairs of homologous polymers with the same structures that are confined in a cylindrical container, which represents the local parts of chromosomes contained in an elongated nucleus of S. pombe. Brownian dynamics simulations of this model showed that the excluded volume effects among non-homological chromosomes and the transitional dynamics of nuclear shape serve to enhance the pairing of homologous chromosomes.

  13. Nature of strong hole pairing in doped Mott antiferromagnets.

    Science.gov (United States)

    Zhu, Zheng; Jiang, Hong-Chen; Sheng, D N; Weng, Zheng-Yu

    2014-01-01

    Cooper pairing instability in a Fermi liquid is well understood by the BCS theory, but pairing mechanism for doped Mott insulators still remains elusive. Previously it has been shown by density matrix renormalization group (DMRG) method that a single doped hole is always self-localized due to the quantum destructive interference of the phase string signs hidden in the t-J ladders. Here we report a DMRG investigation of hole binding in the same model, where a novel pairing-glue scheme beyond the BCS realm is discovered. Specifically, we show that, in addition to spin pairing due to superexchange interaction, the strong frustration of the phase string signs on the kinetic energy gets effectively removed by pairing the charges, which results in strong binding of two holes. By contrast, if the phase string signs are "switched off" artificially, the pairing strength diminishes significantly even if the superexchange coupling remains the same. In the latter, unpaired holes behave like coherent quasiparticles with pairing drastically weakened, whose sole origin may be attributed to the resonating-valence-bond (RVB) pairing of spins. Such non-BCS pairing mechanism is therefore beyond the RVB picture and may shed important light on the high-T(c) cuprate superconductors. PMID:24957467

  14. On the interpolation properties of certain quasilinearizable pairs

    International Nuclear Information System (INIS)

    For a quasilinearizable pair of reflexive spaces {A0,A1}, the interpolation properties of the derived pair {A0+A1, A0 intersection A1} are studied. A real interpolation formula is proved that connects the interpolation spaces of the pairs {A0,A1} and {A0+A1, A0 intersection A1}. In particular, it turns out that the corresponding interpolation spaces coincide for θ1/2 . The results are applied to generalized Nikol'skii-Besov spaces (the quasilinearizability of a pair {Bp,q1(μ0), Bp,q1(μ1)} of such spaces is proved beforehand)

  15. Ion-pair formation in electron recombination with molecular ions

    International Nuclear Information System (INIS)

    By studying ion-pair formation in electron recombination with molecular ions, fundamental knowledge on the molecular dynamics can be obtained. In order to study these types of reactions, both the electron recombination as well as the dynamics all the way to the asymptotic limits must be well described. We have used the wave packet technique to study ion-pair formation in electron recombination with HeH+, HD+, H3+ and HF+. We here discuss what will determine the general shape of the ion-pair cross section, the threshold effects, possible interference effects as well as the ratio of the cross sections of ion-pair formation to dissociative recombination

  16. On the random sampling of pairs, with pedestrian examples

    OpenAIRE

    Arratia, Richard; DeSalvo, Stephen

    2015-01-01

    Suppose one desires to randomly sample a pair of objects such as socks, hoping to get a matching pair. Even in the simplest situation for sampling, which is sampling with replacement, the innocent phrase "the distribution of the color of a matching pair" is ambiguous. One interpretation is that we condition on the event of getting a match between two random socks; this corresponds to sampling two at a time, over and over without memory, until a matching pair is found. A second interpretation ...

  17. Effective t-J model of pairing: singlet versus triplet

    Directory of Open Access Journals (Sweden)

    J.Spałek

    2008-09-01

    Full Text Available The t-J model is regarded as a canonical model of spin-singlet pairing induced by the kinetic exchange interaction also responsible for an antiferromagnetic ordering in the strongly correlated narrow-band systems. In the orbitally degenerate systems both ferromagnetic and antiferromagnetic kinetic exchange interactions occur. I briefly review the analogy between the singlet and triplet types of pairing, as well as draw some general conclusions about the pairing induced by these exchange interactions. The general discussion is also illustrated with a concrete case of a two-dimensional lattice with the spin triplet pairing.

  18. Communication: Improved pair approximations in local coupled-cluster methods

    International Nuclear Information System (INIS)

    In local coupled cluster treatments the electron pairs can be classified according to the magnitude of their energy contributions or distances into strong, close, weak, and distant pairs. Different approximations are introduced for the latter three classes. In this communication, an improved simplified treatment of close and weak pairs is proposed, which is based on long-range cancellations of individually slowly decaying contributions in the amplitude equations. Benchmark calculations for correlation, reaction, and activation energies demonstrate that these approximations work extremely well, while pair approximations based on local second-order Møller-Plesset theory can lead to errors that are 1-2 orders of magnitude larger

  19. Mated Fingerprint Card Pairs (Volumes 1-5)

    Science.gov (United States)

    NIST Mated Fingerprint Card Pairs (Volumes 1-5) (PC database for purchase)   The NIST database of mated fingerprint card pairs (Special Database 9) consists of multiple volumes. Currently five volumes have been released. Each volume will be a 3-disk set with each CD-ROM containing 90 mated card pairs of segmented 8-bit gray scale fingerprint images (900 fingerprint image pairs per CD-ROM). A newer version of the compression/decompression software on the CDROM can be found at the website http://www.nist.gov/itl/iad/ig/nigos.cfm as part of the NBIS package.

  20. Alexander-equivalent Zariski pairs of irreducible sextics

    DEFF Research Database (Denmark)

    Eyral, Christophe; Oka, Mutsuo

    2009-01-01

    The existence of Alexander-equivalent Zariski pairs dealing with irreducible curves of degree 6 was proved by Degtyarev. However, no explicit example of such a pair is available (only the existence is known) in the literature. In this paper, we construct the first concrete example.......The existence of Alexander-equivalent Zariski pairs dealing with irreducible curves of degree 6 was proved by Degtyarev. However, no explicit example of such a pair is available (only the existence is known) in the literature. In this paper, we construct the first concrete example....

  1. DSAM lifetime measurements for the chiral pair in 194Tl

    International Nuclear Information System (INIS)

    Most important for the identification of chiral symmetry in atomic nuclei is to establish a pair of bands that are near-degenerate in energy, but also in B(M1) and B(E2) transition probabilities. Dedicated lifetime measurements were performed for four bands of 194Tl, including the pair of four-quasiparticle chiral bands with close near-degeneracy, considered as a prime candidate for best chiral symmetry pair. The lifetime measurements confirm the excellent near-degeneracy in this pair and indicate that a third band may be involved in the chiral symmetry scenario. (orig.)

  2. Nucleon-pair approximation to the nuclear shell model

    Energy Technology Data Exchange (ETDEWEB)

    Zhao, Y.M., E-mail: ymzhao@sjtu.edu.cn [Department of Physics and Astronomy, Shanghai Jiao Tong University, Shanghai 200240 (China); Arima, A. [Department of Physics and Astronomy, Shanghai Jiao Tong University, Shanghai 200240 (China); Musashi Gakuen, 1-26-1 Toyotamakami Nerima-ku, Tokyo 176-8533 (Japan)

    2014-12-01

    Atomic nuclei are complex systems of nucleons–protons and neutrons. Nucleons interact with each other via an attractive and short-range force. This feature of the interaction leads to a pattern of dominantly monopole and quadrupole correlations between like particles (i.e., proton–proton and neutron–neutron correlations) in low-lying states of atomic nuclei. As a consequence, among dozens or even hundreds of possible types of nucleon pairs, very few nucleon pairs such as proton and neutron pairs with spin zero, two (in some cases spin four), and occasionally isoscalar spin-aligned proton–neutron pairs, play important roles in low-energy nuclear structure. The nucleon-pair approximation therefore provides us with an efficient truncation scheme of the full shell model configurations which are otherwise too large to handle for medium and heavy nuclei in foreseeable future. Furthermore, the nucleon-pair approximation leads to simple pictures in physics, as the dimension of nucleon-pair subspace is always small. The present paper aims at a sound review of its history, formulation, validity, applications, as well as its link to previous approaches, with the focus on the new developments in the last two decades. The applicability of the nucleon-pair approximation and numerical calculations of low-lying states for realistic atomic nuclei are demonstrated with examples. Applications of pair approximations to other problems are also discussed.

  3. Stereo Pair, Salt Lake City, Utah

    Science.gov (United States)

    2002-01-01

    The 2002 Winter Olympics are hosted by Salt Lake City at several venues within the city, in nearby cities, and within the adjacent Wasatch Mountains. This image pair provides a stereoscopic map view of north central Utah that includes all of these Olympic sites. In the south, next to Utah Lake, Provo hosts the ice hockey competition. In the north, northeast of the Great Salt Lake, Ogden hosts curling and the nearby Snowbasin ski area hosts the downhill events. In between, southeast of the Great Salt Lake, Salt Lake City hosts the Olympic Village and the various skating events. Further east, across the Wasatch Mountains, the Park City ski resort hosts the bobsled, ski jumping, and snowboarding events. The Winter Olympics are always hosted in mountainous terrain. This view shows the dramatic landscape that makes the Salt Lake City region a world-class center for winter sports.This stereoscopic image was generated by draping a Landsat satellite image over a Shuttle Radar Topography Mission digital elevation model. Two differing perspectives were then calculated, one for each eye. They can be seen in 3-D by viewing the left image with the right eye and the right image with the left eye (cross-eyed viewing or by downloading and printing the image pair and viewing them with a stereoscope. When stereoscopically merged, the result is a vertically exaggerated view of Earth's surface in its full three dimensions.Landsat has been providing visible and infrared views of the Earth since 1972. SRTM elevation data matches the 30-meter (98-foot) resolution of most Landsat images and will substantially help in analyzing the large and growing Landsat image archive, managed by the U.S. Geological Survey (USGS).Elevation data used in this image was acquired by the Shuttle Radar Topography Mission (SRTM) aboard the Space Shuttle Endeavour, launched on Feb. 11, 2000. SRTM used the same radar instrument that comprised the Spaceborne Imaging Radar-C/X-Band Synthetic Aperture Radar (SIR

  4. Modification of pion pairs in nuclear matter

    International Nuclear Information System (INIS)

    In this work the quasifree photoproduction of pion pairs on bound nucleons is analyzed for the solid targets carbon, calcium and lead. These measurements allow an isospin dependent determination of the in medium properties of pion pairs. The invariant mass distributions showed a shift in strength towards the threshold region with increasing atomic number of the targets in case of an isoscalar ππ meson system. According to theoretical predictions this effect was interpreted as a positive signature of a partial restoration of chiral symmetry. A pioneering experiment with photon beams was performed by the TAPS collaboration at the accelerator facility MAMI-B in Mainz in 1995. This measurement observed an invariant mass shift of the isoscalar π0π0 channel with increasing atomic number. In the π±π0 channel this effect was not observed. This observation confirmed the former experiments, since final state interactions of the pions would affect in first order both isospin channels in a similar way. Due to the poor statistics, the significance of the data was however limited. The experiment described in this work reached a much higher statistical significance, allowing a review of the old data and a study of the dependence of the signal from parameters like the momenta of the ππ system or the single pions. In this experiment, the TAPS detector was used as a forward wall in combination with the Crystal Ball detector to achieve a 4π solid angle coverage for photon detection at the MAMI accelerator facility. The new readout electronics for the BaF2 crystals was used for the first time. The new data analysis confirms the previously measured and published data. However, the shift of the invariant π0π0 mass to the threshold region is less pronounced than in the published data. By performing cuts on the individual pion momenta, resulting in a maximum mean free path of the pions, the shift towards lower masses is enhanced. BUU transport calculations can not describe the

  5. Hidden Pair of Supermassive Black Holes

    Science.gov (United States)

    Kohler, Susanna

    2015-08-01

    Could a pair of supermassive black holes (SMBHs) be lurking at the center of the galaxy Mrk 231? A recent study finds that this may be the case and the unique spectrum of this galaxy could be the key to discovering more hidden binary SMBH systems.Where Are the Binary Supermassive Black Holes?Its believed that most, if not all, galaxies have an SMBH at their centers. As two galaxies merge, the two SMBHs should evolve into a closely-bound binary system before they eventually merge. Given the abundance of galaxy mergers, we would expect to see the kinematic and visual signatures of these binary SMBHs among observed active galactic nuclei yet such evidence for sub-parsec binary SMBH systems remains scarce and ambiguous. This has led researchers to wonder: is there another way that we might detect these elusive systems?A collaboration led by Chang-Shuo Yan (National Astronomical Observatories, Chinese Academy of Sciences) thinks that there is. The group suggests that these systems might have distinct signatures in their optical-to-UV spectra, and they identify a system that might be just such a candidate: Mrk 231.A Binary CandidateProposed model of Mrk 231. Two supermassive black holes, each with their own mini-disk, orbit each other in the center of a circumbinary disk. The secondary black hole has cleared gap in the circumbinary disk as a result of its orbit around the primary black hole. [Yan et al. 2015]Mrk 231 is a galaxy with a disturbed morphology and tidal tails strong clues that it might be in the final stages of a galactic merger. In addition to these signs, Mrk 231 also has an unusual spectrum for a quasar: its continuum emission displays an unexpected drop in the near-UV band.Yan and her collaborators propose that the odd behavior of Mrk 231s spectrum can be explained if the center of the galaxy houses a pair of SMBHs each with its own mini accretion disk surrounded by a circumbinary accretion disk. As the secondary SMBH orbits the primary SMBH (with a

  6. Exposure to pairs of Aeromonas strains enhances virulence in the Caenorhabditis elegans infection model

    Directory of Open Access Journals (Sweden)

    Thomas eMosser

    2015-11-01

    Full Text Available Aeromonad virulence remains poorly understood, and is difficult to predict from strain characteristics. In addition, infections are often polymicrobial (i.e., are mixed infections, and 5-10% of such infections include two distinct aeromonads, which has an unknown impact on virulence. In this work, we studied the virulence of aeromonads recovered from human mixed infections. We tested them individually and in association with other strains with the aim of improving our understanding of aeromonosis. Twelve strains that were recovered in pairs from six mixed infections were tested in a virulence model of the worm Caenorhabditis elegans. Nine isolates were weak worm killers (median time to death, TD50, ≥7 days when administered alone. Two pairs showed enhanced virulence, as indicated by a significantly shortened TD50 after co-infection versus infection with a single strain. Enhanced virulence was also observed for five of the 14 additional experimental pairs, and each of these pairs included one strain from a natural synergistic pair. These experiments indicated that synergistic effects were frequent and were limited to pairs that were composed of strains belonging to different species. The genome content of virulence-associated genes failed to explain virulence synergy, although some virulence-associated genes that were present in some strains were absent from their companion strain (e.g., T3SS. The synergy observed in virulence when 2 Aeromonas isolates were co-infected stresses the idea that consideration should be given to the fact that infection does not depend only on single strain virulence but is instead the result of a more complex interaction between the microbes involved, the host and the environment. These results are of interest for other diseases in which mixed infections are likely and in particular for water-borne diseases (e.g., legionellosis, vibriosis, in which pathogens may display enhanced virulence in the presence of the

  7. Expanding the Horizons of Educational Pair Programming: A Methodological Review of Pair Programming in Computer Science Education Research

    OpenAIRE

    Rimington, Keith B.

    2010-01-01

    Educators and researchers continue to explore the benefits, real or imagined, of implementing pair programming as part of the computer science pedagogy. Current reviews of computer science educational research practices do not focus on educational pair programming. This thesis presents a review of the research methods used in recent educational pair programming research. The primary purpose of this review is to inform the ongoing dialogue about and to provide evidence-based recommendations fo...

  8. Competition between pairing and anti-pairing correlations in the superdeformed nuclear states in A∼190 and 150 ranges

    International Nuclear Information System (INIS)

    An approach considering both pairing and anti-pairing correlations in superdeformed (SD) states is proposed. Calculated results show that not only the general changing feature but also the turnover of dynamical moment of inertia with rotational frequency of the first SD band of 192Hg, 194Hg and 152Dy are well described in the approach. It indicates that there exist competition, even change-over between the anti-pairing and pairing effects in the SD states in A∼190 and 150 ranges

  9. Vortex Pair Creation on Brane-Antibrane Pair via Marginal Deformation

    OpenAIRE

    Majumder, Jaydeep; Sen, Ashoke(Harish-Chandra Research Institute, Chhatnag Road, Jhusi, Allahabad, 211019, India)

    2000-01-01

    It has been conjectured that the vortex solution on a D-brane - anti-D-brane system represents a D-brane of two lower dimension. We establish this result by first identifying a series of marginal deformations which create the vortex - antivortex pair on the brane - antibrane system, and then showing that under this series of marginal deformations the original D-brane - anti-D-brane system becomes a D-brane - anti-D-brane system with two lower dimensions. Generalization of this construction to...

  10. OryzaExpress: An Integrated Database of Gene Expression Networks and Omics Annotations in Rice

    OpenAIRE

    Hamada, Kazuki; Hongo, Kohei; Suwabe, Keita; Shimizu, Akifumi; Nagayama, Taishi; Abe, Reina; Kikuchi, Shunsuke; Yamamoto, Naoki; Fujii, Takaaki; Yokoyama, Koji; Tsuchida, Hiroko; Sano, Kazumi; Mochizuki, Takako; Oki, Nobuhiko; Horiuchi, Youko

    2010-01-01

    Similarity of gene expression profiles provides important clues for understanding the biological functions of genes, biological processes and metabolic pathways related to genes. A gene expression network (GEN) is an ideal choice to grasp such expression profile similarities among genes simultaneously. For GEN construction, the Pearson correlation coefficient (PCC) has been widely used as an index to evaluate the similarities of expression profiles for gene pairs. However, calculation of PCCs...

  11. Multiple Pattern Matching Algorithm using Pair-count

    Directory of Open Access Journals (Sweden)

    Raju Bhukya

    2011-07-01

    Full Text Available Pattern matching occurs in various applications, ranging from simple text searching in word processors to identification of common motifs in DNA sequences in computational biology. The problem of exact pattern matching has been well studied and a number of efficient algorithms already exist. However these exact pattern matching algorithms are of little help when they are applied to finding patterns in DNA sequences. Pattern matching in a DNA sequence or pattern searching from a large data base is a major research area in computational biology. To extract pattern from a large sequence it takes more time, in order to reduce searching time we have proposed an approach that reduces the search time with accurate retrieval of the matched pattern from the given sequence of any size of a file. Executing patterns from a large DNA or protein data is a computationally intensive task. As performance plays a major role in extracting patterns from a given DNA sequence or from a large database independent of the size of the sequence. More efficient approaches related to multiple pattern matching techniques are becoming more important for finding the functional as well as the structural properties of the proteins and genes. One of the major problems in genomic field is to perform pattern comparison on DNA and protein sequences. In the current approach we explore a new technique which avoids unnecessary comparisons in the DNA sequence and gives the accurate retrieval of the pattern called a multiple pattern matching algorithm using pair count. The proposed technique gives very good performance related to DNA sequence analysis for querying of publicly available genome sequence data. By using this method the number of comparisons gradually decreases and comparison per character ratio of the proposed algorithm reduces accordingly when compared to the some of the existing popular methods. The experimental results show that there is considerable amount of performance

  12. Real-time pair-feeding of animals

    Science.gov (United States)

    Leon, H. A.; Connolly, J. P.; Hitchman, M. J.; Humbert, J. E.

    1972-01-01

    Automatic pair-feeding system was developed which immediately dispenses same amount of food to control animal as has been consumed by experimental animal that has free access to food. System consists of: master feeding system; slave feeding station; and control mechanism. Technique performs real time pair-feeding without attendant time lag.

  13. Teleportation of Quantum States through Mixed Entangled Pairs

    Institute of Scientific and Technical Information of China (English)

    ZHENG Shi-Biao

    2006-01-01

    @@ We describe a protocol for quantum state teleportation via mixed entangled pairs. With the help of an ancilla,near-perfect teleportation might be achieved. For pure entangled pairs, perfect teleportation might be achieved with a certain probability without using an ancilla. The protocol is generalized to teleportation of multiparticle states and quantum secret sharing.

  14. Thermal pairing and giant dipole resonance in highly excited nuclei

    CERN Document Server

    Dang, Nguyen Dinh

    2014-01-01

    Recent results are reported showing the effects of thermal pairing in highly excited nuclei. It is demonstrated that thermal pairing included in the phonon damping model (PDM) is responsible for the nearly constant width of the giant dipole resonance (GDR) at low temperature $T $ 170 MeV.

  15. Pair Production of Arbitrary Spin Particles by Electromagnetic Fields

    CERN Document Server

    Kruglov, S I

    2004-01-01

    The exact solutions of the wave equation for arbitrary spin particles in the field of the soliton-like electric impulse were obtained. The differential probability of pair production of particles by electromagnetic fields has been evaluated on the basis of the exact solutions. As a particular case, the particle pair producing in the constant and uniform electric field were studied.

  16. Bright-dark incoherently coupled photovoltaic soliton pair

    Institute of Scientific and Technical Information of China (English)

    Hou Chun-Feng; Pei Yan-Bo; Zhou Zhong-Xiang; Sun Xiu-Dong

    2005-01-01

    The coupling between two mutually incoherent optical beams that propagate collinearly in open-circuit photovoltaic photorefractive media is investigated. It is shown that an incoherently coupled bright-dark spatial soliton pair can be formed due to photovoltaic effect. The physical properties of such a soliton pair are also discussed.

  17. Time Domain Analysis of Transmit/Receive Dipole Pair Array

    Institute of Scientific and Technical Information of China (English)

    Zheng Li-zhi; Xiao Bo-xur; Zhu Guo-qiang; Yang Zi-jie

    2003-01-01

    We introduce a new transmit/receive dipole pair array to obtain a compact quasi-monostatic antenna structure for ground penetrating radar systems. And we analyze this transmit/receive dipole pair array in time domain. The numerical results show that if the distance between the transmit antenna and receive antenna is appropriate the array configuration is adoptable.

  18. Teaching Valence Shell Electron Pair Repulsion (VSEPR) Theory

    Science.gov (United States)

    Talbot, Christopher; Neo, Choo Tong

    2013-01-01

    This "Science Note" looks at the way that the shapes of simple molecules can be explained in terms of the number of electron pairs in the valence shell of the central atom. This theory is formally known as valence shell electron pair repulsion (VSEPR) theory. The article explains the preferred shape of chlorine trifluoride (ClF3),…

  19. Proton-neutron correlations in a broken-pair model

    International Nuclear Information System (INIS)

    In this thesis nuclear-structure calculations are reported which were performed with the broken-pair model. The model which is developed, is an extension of existing broken-pair models in so far that it includes both proton and neutron valence pairs. The relevant formalisms are presented. In contrast to the number-non-conserving model, a proton-neutron broken-pair model is well suited to study the correlations which are produced by the proton-neutron interaction. It is shown that the proton-neutron force has large matrix elements which mix the proton- with neutron broken-pair configurations. This occurs especially for Jsup(PI)=2+ and 3- pairs. This property of the proton-neutron force is used to improve the spectra of single-closed shell nuclei, where particle-hole excitations of the closed shell are a special case of broken-pair configurations. Using Kr and Te isotopes it is demonstrated that the proton-neutron force gives rise to correlated pair structures, which remain remarkably constant with varying nucleon numbers. (Auth.)

  20. Training staff to conduct a paired-stimulus preference assessment.

    OpenAIRE

    Lavie, Tami; Sturmey, Peter

    2002-01-01

    Three staff members were trained to conduct stimulus preference assessments using a paired-stimulus format with 8 children with autism. Staff were trained to mastery level using brief instruction, a video model, and rehearsal with verbal feedback. Training took about 80 min per staff member. Results demonstrated that staff rapidly learned to correctly perform paired-stimulus preference assessments with children.

  1. Tensor product theorem for Hitchin pairs -An algebraic approach

    CERN Document Server

    Balaji, V

    2010-01-01

    We give an algebraic approach to the study of Hitchin pairs and prove the tensor product theorem for Higgs semistable Hitchin pairs over smooth projective curves defined over algebraically closed fields $k$ of characteristic $0$ and characteristic $p$, with $p$ satisfying some natural bounds. We also prove the corresponding theorem for polystable bundles.

  2. Approximate solution of the pairing Hamiltonian in the Berggren basis

    CERN Document Server

    Mercenne, A; Ploszajczak, M

    2015-01-01

    We derive the approximate solution for the pairing Hamiltonian in the Berggren ensemble of single particle states including bound, resonance and non-resonant scattering states. We show that this solution is reliable in the limit of a weak pairing interaction.

  3. Galaxy pairs as a probe for mergers at z ~ 2

    DEFF Research Database (Denmark)

    Man, A.W.S.; Zirm, Andrew Wasmuth; Toft, Sune

    2011-01-01

    In this work I investigate the redshift evolution of pair fraction of a sample of 196 massive galaxies from z = 0 to 3, selected from the COSMOS field. We find that on average a massive galaxy undergoes ~ 1.1 \\pm 0.5 major merger since z = 3. I will review the current limitations of using the pair...

  4. Solving the Airline Crew Pairing Problem using Subsequence Generation

    DEFF Research Database (Denmark)

    Rasmussen, Matias Sevel; Ryan, David; Lusby, Richard Martin; Larsen, Jesper

    Good and fast solutions to the airline crew pairing problem are highly interesting for the airline industry, as crew costs are the biggest expenditure after fuel for an airline. The crew pairing problem is typically modelled as a set partitioning problem and solved by column generation. However...

  5. Subsequence Generation for the Airline Crew Pairing Problem

    DEFF Research Database (Denmark)

    Rasmussen, Matias Sevel; Lusby, Richard Martin; Ryan, David; Larsen, Jesper

    Good and fast solutions to the airline crew pairing problem are highly interesting for the airline industry, as crew costs are the biggest expenditure after fuel for an airline. The crew pairing problem is typically modelled as a set partitioning problem and solved by column generation. However...

  6. A Metacognitive Approach to Pair Programming: Influence on Metacognitive Awareness

    Science.gov (United States)

    Breed, Betty; Mentz, Elsa; van der Westhuizen, Gert

    2014-01-01

    Introduction: The research focused on metacognition in a collaborative learning setting. Based on a comprehensive literature study the researchers designed a metacognitive teaching-learning strategy for pair programmers. Our purpose was to investigate the influence of this metacognitive teaching-learning strategy during pair programming in an…

  7. Regimes of Pulsar Pair Formation and Particle Energetics

    CERN Document Server

    Harding, A K; Muslimov, A G; Harding, Alice K.; Zhang, Alexander G. Muslimov & Bing

    2002-01-01

    We investigate the conditions required for the production of electron-positron pairs above a pulsar polar cap (PC) and the influence of pair production on the energetics of the primary particle acceleration. Assuming space-charge limited flow acceleration including the inertial frame-dragging effect, we allow both one-photon and two-photon pair production by either curvature radiation (CR) photons or photons resulting from inverse-Compton scattering of thermal photons from the PC by primary electrons. We find that, while only the younger pulsars can produce pairs through CR, nearly all known radio pulsars are capable of producing pairs through non-resonant inverse-Compton scatterings. The effect of the neutron star equations of state on the pair death lines is explored. We show that pair production is facilitated in more compact stars and more massive stars. Therefore accretion of mass by pulsars in binary systems may allow pair production in most of the millisecond pulsar population. We also find that two-ph...

  8. Pulsar Pair Cascades in Magnetic Fields with Offset Polar Caps

    CERN Document Server

    Harding, Alice K

    2011-01-01

    Neutron star magnetic fields may have polar caps (PC) that are offset from the dipole axis, through field-line sweepback near the light cylinder or non-symmetric currents within the star. The effects of such offsets on electron-positron pair cascades are investigated, using simple models of dipole magnetic fields with small distortions that shift the PCs by different amounts or directions. Using a Monte Carlo pair cascade simulation, we explore the changes in the pair spectrum, multiplicity and energy flux across the PC, as well as the trends in pair flux and pair energy flux with spin-down luminosity, L_{sd}. We also give an estimate of the distribution of heating flux from returning positrons on the PC for different offsets. We find that even modest offsets can produce significant increases in pair multiplicity, especially for pulsars that are near or beyond the pair death lines for centered PCs, primarily because of higher accelerating fields. Pair spectra cover several decades in energy, with the spectral...

  9. Secure Ad-hoc Pairing with Biometrics: SAfE

    NARCIS (Netherlands)

    Buhan, I.R.; Doumen, J.M.; Hartel, P.H.; Veldhuis, R.N.J.

    2007-01-01

    The pairing problem is to enable two devices, which share no prior context with each other, to agree upon a security association that they can use to protect their subsequent communication. Secure pairing should offer guarantees of the association partner's identity and it should be resistant to eav

  10. Secure Ad-hoc Pairing with Biometrics: SAfE

    NARCIS (Netherlands)

    Buhan, Ileana; Doumen, Jeroen; Hartel, Pieter; Veldhuis, Raymond

    2007-01-01

    The pairing problem is to enable two devices, which share no prior context with each other, to agree upon a security association that they can use to protect their subsequent communication. Secure pairing should o®er guarantees of the association partner's identity and it should be resistant to eave

  11. Lepton-pair production in hadron-nucleus collisions

    International Nuclear Information System (INIS)

    The general features of lepton pair production are reviewed. Physics motivations for precision measurements of lepton pair production in nuclei are discussed. Preliminary results from Fermilab experiment E772 are presented. The relevance of these results to the EMC effects and to J//psi/ suppression in heavy ion collisions is also discussed. 73 refs., 26 figs., 2 tabs

  12. MC1R variants predisposing to concomitant primary cutaneous melanoma in a monozygotic twin pair

    Directory of Open Access Journals (Sweden)

    Pellegrini Cristina

    2012-09-01

    Full Text Available Abstract Background Concomitant primary cutaneous melanoma in monozygotic twins has been reported in only two pairs but in neither of them genetic analysis was performed. Two high-penetrance susceptibility genes, CDKN2A and CDK4 and one low-penetrance gene, MC1R, are well-defined genetic risk factors for melanoma. MITF has been recently identified as a novel intermediate risk melanoma-predisposing gene. Case presentation We describe the extraordinary occurrence of a primary cutaneous invasive melanoma in two 44-year-old identical, female twins, on the same body site within 30 days of each other and report for the first time the genetic analysis of melanoma susceptibility genes in both twins. Data on characteristics of the twins were collected through a standardized questionnaire and skin examination. Exons 1α, 1β, 2 and 3 of CDKN2A, exon 2 of CDK4, the entire open reading frame of MC1R and the recently described MITF c.952 G > A (p.Glu318Lys variant were investigated by direct sequencing. Sequencing analysis of the high-penetrance susceptibility genes showed no changes in CDKN2A and in exon 2 of the CDK4 gene. Both patients were heterozygous for the same CDKN2A UTR c.*29C > G variant. Interestingly, the same two heterozygous variants of the MC1R were identified in both twins: the c.451C > T (p.Arg151Cys and the c.456C > A (p.Tyr152* variants. Neither patient showed the c.952 G > A (p.Glu318Lys substitution in the MITF gene. Conclusions Identification of two high-risk MC1R variants in our identical twins in the absence of CDKN2A and CDK4 mutations highlights the contribution of low penetrance genes, such as MC1R, in melanoma susceptibility.

  13. Fast local fragment chaining using sum-of-pair gap costs

    DEFF Research Database (Denmark)

    Otto, Christian; Hoffmann, Steve; Gorodkin, Jan;

    2011-01-01

    Background: Fast seed-based alignment heuristics such as BLAST and BLAT have become indispensable tools in comparative genomics for all studies aiming at the evolutionary relations of proteins, genes, and non-coding RNAs. This is true in particular for the large mammalian genomes. The sensitivity...... local alignment heuristics alone. By providing both the linear and the sum-of-pair gap cost model, a wider range of application can be covered. The software clasp is available at http://www.bioinf.uni-leipzig.de/Software/clasp/....

  14. Pairing-induced speedup of nuclear spontaneous fission

    CERN Document Server

    Sadhukhan, Jhilam; Nazarewicz, W; Sheikh, J A; Baran, A

    2014-01-01

    Collective inertia is strongly influenced at the level crossing at which quantum system changes diabatically its microscopic configuration. Pairing correlations tend to make the large-amplitude nuclear collective motion more adiabatic by reducing the effect of those configuration changes. Competition between pairing and level crossing is thus expected to have a profound impact on spontaneous fission lifetimes. To elucidate the role of nucleonic pairing on spontaneous fission, we study the dynamic fission trajectories of $^{264}$Fm and $^{240}$Pu using the state-of-the-art self-consistent framework. We employ the superfluid nuclear density functional theory with the Skyrme energy density functional SkM$^*$ and a density-dependent pairing interaction. Along with shape variables, proton and neutron pairing correlations are taken as collective coordinates. The collective inertia tensor is calculated within the nonperturbative cranking approximation. The fission paths are obtained by using the least action princip...

  15. Semiclassical pair production rate for rotating electric fields

    CERN Document Server

    Strobel, Eckhard

    2014-01-01

    We semiclassically investigate Schwinger pair production for pulsed rotating electric fields depending on time. To do so we solve the Dirac equation for two-component fields in a WKB-like approximation. The result shows that for two-component fields the spin distribution of produced pairs is generally not $1:1$. As a result the pair creation rates of spinor and scalar quantum electro dynamics (QED) are different even for one pair of turning points. For rotating electric fields the pair creation rate is dominated by particles with a specific spin depending on the sense of rotation. We present an analytical solution for the momentum spectrum of the constant rotating field. We find interference effects not only in the momentum spectrum but also in the total particle number of rotating electric fields.

  16. A new threshold proxy signature scheme from bilinear pairings

    Institute of Scientific and Technical Information of China (English)

    QIAN Haifeng; CAO Zhenfu; XUE Qingshui

    2004-01-01

    Based on the GDH signature (short signature scheme) a probabilistic signature scheme is proposed in this paper with security proof. Then a new threshold proxy signature from bilinear pairings is proposed as well by using the new probabilistic signature scheme and the properties of the Gap Diffie-Hellman (GDH) group (where the Computational Diffie-Hellman problem is hard but the Decisional Diffie-Hellman problem is easy to solve). Our constructions are based on the recently proposed GDH signature scheme of Bonel et al.'s article. Bilinear pairings could be built from Weil pairing or Tate pairing. So most our constructions would be simpler, but still with high security. The proposed threshold proxy signature is the first one which is built from bilinear pairings. At the end of this paper security and performance of the threshold proxy signature scheme is also analyzed.

  17. High-Temperature Cooper pairing Between Different Chemical Species

    CERN Document Server

    Mackie, M; Piilo, J; Suominen, K A; Javanainen, J; Mackie, Matt; Dannenberg, Olavi; Piilo, Jyrki; Suominen, Kalle-Antti; Javanainen, Juha

    2003-01-01

    First introduced to explain superconductivity, anomalous quantum correlations between degenerate electrons with equal and opposite momentum, i.e., Cooper pairs, are due physically to an electron-electron attraction mediated by the exchange of lattice-vibration-generated phonons. Cooper-like pairing between different chemical species was immediately suggested to explain the larger excitation energy for nuclei with even-rather-than-odd numbers of nucleons, although unambiguous evidence for proton-neutron pairs never manifested. Here we report the prospect of Cooper pairing between different chemical species in a degenerate Fermi atom-molecule mixture submerged in a Bose condensate of atoms, a state enabled via two-color Raman photoassociation of a Bose-Fermi mixture of degenerate atoms. Condensate density fluctuations replace the vibrating ion lattice of the superconductor, and phonon exchange induces atom-molecule Cooper pairing at about a third of the Fermi temperature.

  18. SD nucleon pair approximation of the shell model

    International Nuclear Information System (INIS)

    It is found that the SD-pair truncation is a good approximation of the shell model in the single-j case when the Hamiltonian consists of (monopole and quadrupole) pairing plus quadrupole type interaction. The SD-pair truncation deteriorates if the QQ-type interaction is artificially large compared with the monopole pairing interaction. In the degenerate sd, pf, and sdg shells in which Hamiltonian consists of pure QQ-type interaction, the basic properties of band structure remain intact in general although there is a large difference between the calculated energy levels and binding energies in the SD-pair truncated subspace and those calculated in the full shell model space. The difference in moment of inertia can be easily absorbed by adjusting interaction strengths. (author)

  19. Interpreting anomalous electron pairs as new particle decay

    International Nuclear Information System (INIS)

    In heavy particle decays found in cosmic ray interactions recorded in the JACEE emulsion chambers, multiple electron pairs were previously reported. These pairs apparently originated from conversions of photons emitted in the decays. It is difficult to explain the overall properties of these decays in terms of known heavy particle decay modes. A recently published compilation of low-energy nuclear data suggests the presence of excess electron pairs with invariant mass of about 9 MeV/c2, which may be explained by postulating the existence of a new neutral boson decaying into the electron pair. The feasibility of explaining the JACEE electron pairs with this hypothesis is presented. (author). Letter-to-the-editor

  20. Nonperturbative signatures in pair production for general elliptic polarization fields

    CERN Document Server

    Li, Z L; Xie, B S; Shen, B F; Fu, L B; Liu, J

    2015-01-01

    The momentum signatures in nonperturbative multiphoton pair production for general elliptic polarization electric fields are investigated by employing the real-time Dirac-Heisenberg-Wigner formalism. For a linearly polarized electric field we find that the positions of the nodes in momenta spectra of created pairs depend only on the electric field frequency. The polarization of external fields could not only change the node structures or even make the nodes disappear but also change the thresholds of pair production. The momentum signatures associated to the node positions in which the even-number-photon pair creation process is forbid could be used to distinguish the orbital angular momentum of created pairs on the momenta spectra. These distinguishable momentum signatures could be relevant for providing the output information of created particles and also the input information of ultrashort laser pulses.

  1. Scent-marking in lone wolves and newly formed pairs

    Science.gov (United States)

    Rothman, R.J.; Mech, L.D.

    1979-01-01

    Scent-marking was studied in wolves (Canis lupus) along 133 km of tracks in northern Minnesota during winters of 1975 to 1976 and 1976 to 1977 and in two captive packs and four captive pairs for various periods. Lone wolves, which possess neither mates nor territories, rarely marked by raised-leg urination and defaecated and urinated less along roads and trails, where territorial pairs and packs generally marked. Newly formed pairs marked the most, eventually decreasing their rates to those of established packs. Generally, wolves that scent-marked also bred, whereas non-marking wolves usually did not breed. Scent-marking apparently is important to the success of courtship in new pairs and to reproductive synchrony in established pairs, as well as serving a territorial function.

  2. PULSAR PAIR CASCADES IN A DISTORTED MAGNETIC DIPOLE FIELD

    International Nuclear Information System (INIS)

    We investigate the effect of a distorted neutron star dipole magnetic field on pulsar pair cascade multiplicity and pair death lines. Using a simple model for a distorted dipole field that produces an offset polar cap (PC), we derive the accelerating electric field above the PC in space-charge-limited flow. We find that even a modest azimuthally asymmetric distortion can significantly increase the accelerating electric field on one side of the PC and, combined with a smaller field line radius of curvature, leads to larger pair multiplicity. The death line for producing pairs by curvature radiation moves downward in the P- P-dot diagram, allowing high pair multiplicities in a larger percentage of the radio pulsar population. These results could have important implications for the radio pulsar population, high energy pulsed emission, and the pulsar contribution to cosmic ray positrons.

  3. Pulsar Pair Cascades in a Distorted Magnetic Dipole Field

    Science.gov (United States)

    Harding, Alice K.; Muslimov, Alex G.

    2010-01-01

    We investigate the effect of a distorted neutron star dipole magnetic field on pulsar pair cascade multiplicity and pair death lines. Using a simple model for a distorted dipole field that produces an offset polar cap (PC), we derive the accelerating electric field above the PC in space-charge-limited flow. We find that even a modest azimuthally asymmetric distortion can significantly increase the accelerating electric field on one side of the PC and, combined with a smaller field line radius of curvature, leads to larger pair multiplicity. The death line for producing pairs by curvature radiation moves downward in the P-P-dot diagram, allowing high pair multiplicities in a larger percentage of the radio pulsar population. These results could have important implications for the radio pulsar population, high energy pulsed emission, and the pulsar contribution to cosmic ray positrons.

  4. Stereo Pair, Mount St Helens, Washington State

    Science.gov (United States)

    2002-01-01

    On May 18, 1980, Mount St. Helens catastrophically erupted, causing the worst volcanic disaster in the recorded history of the United States. An earthquake shook loose the northern flank of the volcano, and about 2.8 cubic kilometers (0.67 cubic miles) of rock slid downslope in the world's largest recorded landslide. The avalanche released pressure on the volcano and unleashed a huge explosion, which was directed generally northward. The mountain ultimately lost 227 meters (1314 feet) of its height and devastated about 600 square kilometers (230 square miles) of forest.This stereoscopic view combines a Landsat satellite image with a Shuttle Radar Topography Mission elevation model to show the volcanic crater and most of the zone of devastation. Areas now relatively devoid of vegetation appear bright. Note the landslide debris clogging the northern drainages and forming natural dams (or enlarging previously existing ones). Also note the volcanic dome built up within the crater, and the extensive floating debris still present on Spirit Lake (northeast of the crater) 12 years after the eruption.This stereoscopic image was generated by draping a Landsat satellite image over a Shuttle Radar Topography Mission digital elevation model. Two differing perspectives were then calculated, one for each eye. They can be seen in 3-D by viewing the left image with the right eye and the right image with the left eye (cross-eyed viewing or by downloading and printing the image pair and viewing them with a stereoscope. When stereoscopically merged, the result is a vertically exaggerated view of Earth's surface in its full three dimensions.Landsat has been providing visible and infrared views of the Earth since 1972. SRTM elevation data matches the 30-meter (98-foot) resolution of most Landsat images and will substantially help in analyzing the large and growing Landsat image archive, managed by the U.S. Geological Survey (USGS).Elevation data used in this image was acquired by the

  5. SRTM Stereo Pair: Wheeler Ridge, California

    Science.gov (United States)

    2000-01-01

    Wheeler Ridge and vicinity, California, is a site of major tectonic activity, both historically and over recent geologic time. The epicenter of the 7.5 magnitude Kern County earthquake occurred here on July 21,1952, and numerous geologic and topographic features indicate rapid geologic processes. The ridge itself (upper-right center) is a geologic fold that is growing out of the southern San Joaquin Valley. A prominent 'wind gap,' now used for passage of the California aquaduct (with the aid of a pumping station), is evidence that the ridge grew faster than tranversing streams could erode down. Nearby abrupt and/or landslid mountain fronts similarly indicate a vigorous tectonic setting here, just north of the San Andreas fault. The Interstate 5 freeway can be seen crossing agricultural fields on the right and entering the very rugged and steep Grapevine Canyon toward the bottom.This stereoscopic image was generated by draping a Landsat satellite image over a preliminary Shuttle Radar Topography Mission (SRTM) elevation model. Two differing perspectives were then calculated, one for each eye. They can be seen in 3-D by viewing the left image with the right eye and the right image with the left eye (cross-eyed viewing), or by downloading and printing the image pair and viewing them with a stereoscope. When stereoscopically merged, the result is a vertically exaggerated view of the Earth's surface in its full three dimensions. Landsat has been providing visible and infrared views of the Earth since 1972. SRTM elevation data matches the 30-meter resolution of most Landsat images and will substantially help in analyses of the large and growing Landsat image archive.The elevation data used in this image was acquired by SRTM aboard the Space Shuttle Endeavour, launched on February 11, 2000. SRTM used the same radar instrument that comprised the Spaceborne Imaging Radar-C/X-Band Synthetic Aperture Radar (SIR-C/X-SAR) that flew twice on the Space Shuttle Endeavour in 1994

  6. SRTM Stereo Pair: Northwest of Bhuj, India

    Science.gov (United States)

    2001-01-01

    On January 26, 2001, the Kachchh region in western India suffered the most deadly earthquake in India's history. Shortly thereafter, geologists traversed the region looking for ground surface disruptions, such as fault breaks, that could provide clues to the tectonic processes here. Shuttle Radar Topography Mission (SRTM) scientists provided stereoscopic images to the geologists, similar to this 3-D view of the terrain northwest of the city of Bhuj. The geologists reported back that the images were essential in optimizing their field activities. Tectonic landforms are created by ground displacements that are repetitious over geologic time, so these landforms are good places to look for co-seismic faulting and warping. The stereoscopic images showed the geologists where the structures are located and their overall pattern, which could not be seen while standing on anyone hill or in any one gully. In general, the field studies found that surface disruptions by the recent earthquake were minimal and that the major landforms are quite old and probably not directly related to ongoing tectonic processes.Features of interest in the view shown here include the largest hill (upper left-center), which is a dome or anticline, upwardly convex layered rocks. Also visible are a possible volcanic plug (lower left-center) and an incised meandering stream (center). Agriculture in this arid region is concentrated on the alluvial fan of the major stream (green pattern, upper right).This stereoscopic image was generated by draping a Landsat satellite image (taken just two weeks after the earthquake) over a preliminary SRTM elevation model. Two differing perspectives were then calculated, one for each eye. They can be seen in 3-D by viewing the left image with the right eye and the right image with the left eye (cross-eyed viewing or by downloading and printing the image pair and viewing them with a stereoscope. When stereoscopically merged, the result is a vertically exaggerated view

  7. On the combination of the Cooper pair and the Ogg pair in the high-Tc oxide superconductor

    International Nuclear Information System (INIS)

    In this paper it is argued that the superconductivity of the high-Tc oxide superconductor (HTOS) can be explained by the combinating mechanism of the Cooper pair and the Ogg pair. The properties of the superconducting state of the HTOS have been calculated under this mechanism, and the theoretical results are overall consistent with the experiment. (author). 37 refs

  8. Genetic Analysis of Major and Minor Gene(s) Resistant to Stripe Rust in Important Resource Wheat Line Jinghe891-1

    Institute of Scientific and Technical Information of China (English)

    XU Shi-chang; ZHANG Jing-yuan; ZHAO Wen-sheng; WU Li-ren; ZHANG Ji-xin; YUAN Zhen-dong

    2002-01-01

    Inheritance of line Jinghe891-1 resistant to pathotype of Puccinia striiformis in two patterns of temperature (Normal: day 18℃/night 10℃, High: day 24℃/night 15℃ )was studied in this paper. The results showed that there were at least two pairs of dominant major genes and one pair of recessive minor genes in Jinghe 891-1. The two pairs of major genes that conferred resistance to CY31 were allelic or linked closely with resistance gene in Jubilejna Ⅱ , Kangyin655 and T. spelta Album. They were novel resistance genes and were inherited in a repeated or independent mode. The minor genes, which could modify the major genes,were sensitive to temperature and conferred resistance to all pathotypes of Puccinia striiformis in China. It is recommended that this line can be used as an important resource stock.

  9. Early Life Manipulations of the Nonapeptide System Alter Pair Maintenance Behaviors and Neural Activity in Adult Male Zebra Finches.

    Science.gov (United States)

    Baran, Nicole M; Tomaszycki, Michelle L; Adkins-Regan, Elizabeth

    2016-01-01

    Adult zebra finches (T. guttata) form socially monogamous pair bonds characterized by proximity, vocal communication, and contact behaviors. In this experiment, we tested whether manipulations of the nonapeptide hormone arginine vasotocin (AVT, avian homolog of vasopressin) and the V1a receptor (V1aR) early in life altered species-typical pairing behavior in adult zebra finches of both sexes. Although there was no effect of treatment on the tendency to pair in either sex, males in different treatments exhibited profoundly different profiles of pair maintenance behavior. Following a brief separation, AVT-treated males were highly affiliative with their female partner but sang very little compared to Controls. In contrast, males treated with a V1aR antagonist sang significantly less than Controls, but did not differ in affiliation. These effects on behavior in males were also reflected in changes in the expression of V1aR and immediate early gene activity in three brain regions known to be involved in pairing behavior in birds: the medial amygdala, medial bed nucleus of the stria terminalis, and the lateral septum. AVT males had higher V1aR expression in the medial amygdala than both Control and antagonist-treated males and immediate early gene activity of V1aR neurons in the medial amygdala was positively correlated with affiliation. Antagonist treated males showed decreased activity in the medial amygdala. In addition, there was a negative correlation between the activity of V1aR cells in the medial bed nucleus of the stria terminalis and singing. Treatment also affected the expression of V1aR and activity in the lateral septum, but this was not correlated with any behaviors measured. These results provide evidence that AVT and V1aR play developmental roles in specific pair maintenance behaviors and the neural substrate underlying these behaviors in a bird. PMID:27065824

  10. Early Life Manipulations of the Nonapeptide System Alter Pair Maintenance Behaviors and Neural Activity in Adult Male Zebra Finches

    Directory of Open Access Journals (Sweden)

    Nicole M. Baran

    2016-03-01

    Full Text Available Adult zebra finches (T. guttata form socially monogamous pair bonds characterized by proximity, vocal communication, and contact behaviors. In this experiment, we tested whether manipulations of the nonapeptide hormone arginine vasotocin (AVT, avian homologue of vasopressin and the V1a receptor (V1aR early in life altered species-typical pairing behavior in adult zebra finches of both sexes. Although there was no effect of treatment on the tendency to pair in either sex, males in different treatments exhibited profoundly different profiles of pair maintenance behavior. Following a brief separation, AVT-treated males were highly affiliative with their female partner but sang very little compared to Controls. In contrast, males treated with a V1aR antagonist sang significantly less than Controls, but did not differ in affiliation. These effects on behavior in males were also reflected in changes in the expression of V1aR and immediate early gene activity in three brain regions known to be involved in pairing behavior in birds: the medial amygdala, medial bed nucleus of the stria terminalis, and the lateral septum. AVT males had higher V1aR expression in the medial amygdala than both Control and antagonist-treated males and immediate early gene activity of V1aR neurons in the medial amygdala was positively correlated with affiliation. Antagonist treated males showed decreased activity in the medial amygdala. In addition, there was a negative correlation between the activity of V1aR cells in the medial bed nucleus of the stria terminalis and singing. Treatment also affected the expression of V1aR and activity in the lateral septum, but this was not correlated with any behaviors measured. These results provide evidence that AVT and V1aR play developmental roles in specific pair maintenance behaviors and the neural substrate underlying these behaviors in a bird.

  11. Calix[4]pyrrole-based ion pair receptors.

    Science.gov (United States)

    Kim, Sung Kuk; Sessler, Jonathan L

    2014-08-19

    Ion pair receptors, which are able to bind concurrently both a cation and an anion, often display higher selectivity and affinity for specific ion pairs than simple ion receptors capable of recognizing primarily either a cation or an anion. This enhancement in recognition function is attributable to direct or indirect cooperative interactions between cobound ions via electrostatic attractions between oppositely charged ions, as well as to positive allosteric effects. In addition, by virtue of binding the counterions of the targeted ion, ion pair receptors can minimize the solvation of the counterions, which can otherwise have a negative effect on the interactions between the receptors and the targeted ions. As a result of their more favorable interactions, ion pair receptors are attractive for use in applications, such as extraction and sensing, where control of the binding interactions is advantageous. In this Account, we illustrate this potential in the context of ion pair receptors based on the calix[4]pyrrole scaffold. Both simple ditopic ion pair receptors, containing sites for the recognition of a single anion and single cation, and so-called multitopic ion pair receptors will be discussed. The latter systems differ from conventional, so-called ditopic ion pair receptors in that they contain more than one binding site for a given targeted ion (e.g., a cation). This permits a level of selectivity and control over binding function not normally seen for simple ion or ion pair receptors containing one or two binding sites, respectively. Calix[4]pyrroles are macrocyclic compounds consisting of four pyrrole units linked via fully substituted sp(3) hybridized meso carbon atoms. They are effective receptors for Lewis basic anions (e.g., halides) in typical organic media and under certain conditions will recognize ion pairs containing charge diffuse cations, such as a small alkylammonium, imidazolium, or cesium cations. The calix[4]pyrrole framework is further

  12. Two pairs of monozygotic twins with concordant acute lymphoblastic leukemia (ALL): case report.

    Science.gov (United States)

    Li, Xue; Sun, Nianzheng; Huang, Xiaoyang; Ju, Xiuli

    2014-07-01

    The occurrence of leukemia in twins is rare but has a crucial implication in the genetic research of leukemia. This report presents 2 pairs of monozygotic twins with precursor B-cell acute lymphoblastic leukemia. Mixed lineage leukemia (MLL)-AF4 fusion genes were found in the twin sisters. This study is the first to report on infant ALL harboring the 46,XY, -4, +10, -13, del(14)(q24), -15, +2mar[4 cells] complex chromosome abnormality. Our report showed that the unified cytogenetic features in monozygotic twins and MLL-AF4 fusion gene may be necessary but insufficient for the clinical development and prognosis of identical twins with leukemia. PMID:24807006

  13. Schistosome sex matters: a deep view into gonad-specific and pairing-dependent transcriptomes reveals a complex gender interplay.

    Science.gov (United States)

    Lu, Zhigang; Sessler, Florian; Holroyd, Nancy; Hahnel, Steffen; Quack, Thomas; Berriman, Matthew; Grevelding, Christoph G

    2016-01-01

    As a key event for maintaining life cycles, reproduction is a central part of platyhelminth biology. In case of parasitic platyhelminths, reproductive processes can also contribute to pathology. One representative example is the trematode Schistosoma, which causes schistosomiasis, an infectious disease, whose pathology is associated with egg production. Among the outstanding features of schistosomes is their dioecious lifestyle and the pairing-dependent differentiation of the female gonads which finally leads to egg synthesis. To analyze the reproductive biology of Schistosoma mansoni in-depth we isolated complete ovaries and testes from paired and unpaired schistosomes for comparative RNA-seq analyses. Of >7,000 transcripts found in the gonads, 243 (testes) and 3,600 (ovaries) occurred pairing-dependently. Besides the detection of genes transcribed preferentially or specifically in the gonads of both genders, we uncovered pairing-induced processes within the gonads including stem cell-associated and neural functions. Comparisons to work on neuropeptidergic signaling in planarian showed interesting parallels but also remarkable differences and highlights the importance of the nervous system for flatworm gonad differentiation. Finally, we postulated first functional hints for 235 hypothetical genes. Together, these results elucidate key aspects of flatworm reproductive biology and will be relevant for basic as well as applied, exploitable research aspects. PMID:27499125

  14. Genes and gene networks implicated in aggression related behaviour.

    Science.gov (United States)

    Malki, Karim; Pain, Oliver; Du Rietz, Ebba; Tosto, Maria Grazia; Paya-Cano, Jose; Sandnabba, Kenneth N; de Boer, Sietse; Schalkwyk, Leonard C; Sluyter, Frans

    2014-10-01

    Aggressive behaviour is a major cause of mortality and morbidity. Despite of moderate heritability estimates, progress in identifying the genetic factors underlying aggressive behaviour has been limited. There are currently three genetic mouse models of high and low aggression created using selective breeding. This is the first study to offer a global transcriptomic characterization of the prefrontal cortex across all three genetic mouse models of aggression. A systems biology approach has been applied to transcriptomic data across the three pairs of selected inbred mouse strains (Turku Aggressive (TA) and Turku Non-Aggressive (TNA), Short Attack Latency (SAL) and Long Attack Latency (LAL) mice and North Carolina Aggressive (NC900) and North Carolina Non-Aggressive (NC100)), providing novel insight into the neurobiological mechanisms and genetics underlying aggression. First, weighted gene co-expression network analysis (WGCNA) was performed to identify modules of highly correlated genes associated with aggression. Probe sets belonging to gene modules uncovered by WGCNA were carried forward for network analysis using ingenuity pathway analysis (IPA). The RankProd non-parametric algorithm was then used to statistically evaluate expression differences across the genes belonging to modules significantly associated with aggression. IPA uncovered two pathways, involving NF-kB and MAPKs. The secondary RankProd analysis yielded 14 differentially expressed genes, some of which have previously been implicated in pathways associated with aggressive behaviour, such as Adrbk2. The results highlighted plausible candidate genes and gene networks implicated in aggression-related behaviour. PMID:25142712

  15. Parietal lesion effects on cued recall following pair associate learning.

    Science.gov (United States)

    Ben-Zvi, Shir; Soroker, Nachum; Levy, Daniel A

    2015-07-01

    We investigated the involvement of the posterior parietal cortex in episodic memory in a lesion-effects study of cued recall following pair-associate learning. Groups of patients who had experienced first-incident stroke, generally in middle cerebral artery territory, and exhibited damage that included lateral posterior parietal regions, were tested within an early post-stroke time window. In three experiments, patients and matched healthy comparison groups executed repeated study and cued recall test blocks of pairs of words (Experiment 1), pairs of object pictures (Experiment 2), or pairs of object pictures and environmental sounds (Experiment 3). Patients' brain CT scans were subjected to quantitative analysis of lesion volumes. Behavioral and lesion data were used to compute correlations between area lesion extent and memory deficits, and to conduct voxel-based lesion-symptom mapping. These analyses implicated lateral ventral parietal cortex, especially the angular gyrus, in cued recall deficits, most pronouncedly in the cross-modal picture-sound pairs task, though significant parietal lesion effects were also found in the unimodal word pairs and picture pairs tasks. In contrast to an earlier study in which comparable parietal lesions did not cause deficits in item recognition, these results indicate that lateral posterior parietal areas make a substantive contribution to demanding forms of recollective retrieval as represented by cued recall, especially for complex associative representations. PMID:25998492

  16. Twin photon pairs in a high-Q silicon microresonator

    International Nuclear Information System (INIS)

    We report the generation of high-purity twin photon pairs through cavity-enhanced non-degenerate four-wave mixing (FWM) in a high-Q silicon microdisk resonator. Twin photon pairs are created within the same cavity mode and are consequently expected to be identical in all degrees of freedom. The device is able to produce twin photons at telecommunication wavelengths with a pair generation rate as large as (3.96 ± 0.03) × 105 pairs/s, within a narrow bandwidth of 0.72 GHz. A coincidence-to-accidental ratio of 660 ± 62 was measured, the highest value reported to date for twin photon pairs, at a pair generation rate of (2.47 ± 0.04) × 104 pairs/s. Through careful engineering of the dispersion matching window, we have reduced the ratio of photons resulting from degenerate FWM to non-degenerate FWM to less than 0.15

  17. The coevolution of long-term pair bonds and cooperation.

    Science.gov (United States)

    Song, Z; Feldman, M W

    2013-05-01

    The evolution of social traits may not only depend on but also change the social structure of the population. In particular, the evolution of pairwise cooperation, such as biparental care, depends on the pair-matching distribution of the population, and the latter often emerges as a collective outcome of individual pair-bonding traits, which are also under selection. Here, we develop an analytical model and individual-based simulations to study the coevolution of long-term pair bonds and cooperation in parental care, where partners play a Snowdrift game in each breeding season. We illustrate that long-term pair bonds may coevolve with cooperation when bonding cost is below a threshold. As long-term pair bonds lead to assortative interactions through pair-matching dynamics, they may promote the prevalence of cooperation. In addition to the pay-off matrix of a single game, the evolutionarily stable equilibrium also depends on bonding cost and accidental divorce rate, and it is determined by a form of balancing selection because the benefit from pair-bond maintenance diminishes as the frequency of cooperators increases. Our findings highlight the importance of ecological factors affecting social bonding cost and stability in understanding the coevolution of social behaviour and social structures, which may lead to the diversity of biological social systems. PMID:23496797

  18. Classes of source pairs in interference and diffraction

    International Nuclear Information System (INIS)

    A description of interference and diffraction based on the concept of class of source pairs is presented. It is the set of pairs of sources whose contributions to the interference or diffraction patterns exhibit the same phase difference. Each class of source pairs provides a specific cosine-like modulation on the intensity distribution of pattern, in such a way that the set provides an expansion of the intensity distribution of the pattern in an orthogonal basis. From this point of view, the classes of source pairs are the effective elementary sources for those intensity distributions. The characteristics of the classes of source pairs can be accurately determined by Fourier transforming the intensity distribution of the patterns. The central value of this Fourier spectrum is related to the number of individual sources. The remaining values will provide two crucial descriptors of the classes: their positions on the Fourier transform domain will be corresponding to the separation vector of the class of pairs for wave front splitting interferometers (WSI) and diffraction, or the time delay for amplitude splitting interferometers (ASI), and their heights will be proportional to their populations. The concept was also applied to Fraunhofer and Fresnel diffraction, but now the classes of source pairs constitute a continuous set instead of the discrete sets in interference. However, the set of classes can also be determined by Fourier analysis. (author)

  19. Attribute pair-based visual recognition and memory.

    Directory of Open Access Journals (Sweden)

    Masahiko Morita

    Full Text Available BACKGROUND: In the human visual system, different attributes of an object, such as shape, color, and motion, are processed separately in different areas of the brain. This raises a fundamental question of how are these attributes integrated to produce a unified perception and a specific response. This "binding problem" is computationally difficult because all attributes are assumed to be bound together to form a single object representation. However, there is no firm evidence to confirm that such representations exist for general objects. METHODOLOGY/PRINCIPAL FINDINGS: Here we propose a paired-attribute model in which cognitive processes are based on multiple representations of paired attributes. In line with the model's prediction, we found that multiattribute stimuli can produce an illusory perception of a multiattribute object arising from erroneous integration of attribute pairs, implying that object recognition is based on parallel perception of paired attributes. Moreover, in a change-detection task, a feature change in a single attribute frequently caused an illusory perception of change in another attribute, suggesting that multiple pairs of attributes are stored in memory. CONCLUSIONS/SIGNIFICANCE: The paired-attribute model can account for some novel illusions and controversial findings on binocular rivalry and short-term memory. Our results suggest that many cognitive processes are performed at the level of paired attributes rather than integrated objects, which greatly facilitates the binding problem and provides simpler solutions for it.

  20. Brain Activation during Memory Encoding in Type 2 Diabetes Mellitus: A Discordant Twin Pair Study

    Science.gov (United States)

    Wood, Amanda G.; Chen, Jian; Moran, Christopher; Phan, Thanh; Beare, Richard; Cooper, Kimberley; Litras, Stacey; Srikanth, Velandai

    2016-01-01

    Type 2 diabetes mellitus increases the risk of dementia and neuronal dysfunction may occur years before perceptible cognitive decline. We aimed to study the impact of type 2 diabetes on brain activation during memory encoding in middle-aged people, controlling for age, sex, genes, and early-shared environment. Twenty-two twin pairs discordant for type 2 diabetes mellitus (mean age 60.9 years) without neurological disease were recruited from the Australian Twin Registry (ATR) and underwent functional magnetic resonance imaging (fMRI) during a memory encoding task, cognitive tests, and structural MRI. Type 2 diabetes was associated with significantly reduced activation in left hemisphere temporoparietal regions including angular gyrus, supramarginal gyrus, and middle temporal gyrus and significantly increased activation in bilateral posteriorly distributed regions. These findings were present in the absence of within-pair differences in standard cognitive test scores, brain volumes, or vascular lesion load. Differences in activation were more pronounced among monozygotic (MZ) pairs, with MZ individuals with diabetes also displaying greater frontal activation. These results provide evidence for preclinical memory-related neuronal dysfunction in type 2 diabetes. They support the search for modifiable later-life environmental factors or epigenetic mechanisms linking type 2 diabetes and cognitive decline.