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Sample records for cis-antisense gene pairs

  1. NCYM, a Cis-antisense gene of MYCN, encodes a de novo evolved protein that inhibits GSK3β resulting in the stabilization of MYCN in human neuroblastomas.

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    Yusuke Suenaga

    2014-01-01

    Full Text Available The rearrangement of pre-existing genes has long been thought of as the major mode of new gene generation. Recently, de novo gene birth from non-genic DNA was found to be an alternative mechanism to generate novel protein-coding genes. However, its functional role in human disease remains largely unknown. Here we show that NCYM, a cis-antisense gene of the MYCN oncogene, initially thought to be a large non-coding RNA, encodes a de novo evolved protein regulating the pathogenesis of human cancers, particularly neuroblastoma. The NCYM gene is evolutionally conserved only in the taxonomic group containing humans and chimpanzees. In primary human neuroblastomas, NCYM is 100% co-amplified and co-expressed with MYCN, and NCYM mRNA expression is associated with poor clinical outcome. MYCN directly transactivates both NCYM and MYCN mRNA, whereas NCYM stabilizes MYCN protein by inhibiting the activity of GSK3β, a kinase that promotes MYCN degradation. In contrast to MYCN transgenic mice, neuroblastomas in MYCN/NCYM double transgenic mice were frequently accompanied by distant metastases, behavior reminiscent of human neuroblastomas with MYCN amplification. The NCYM protein also interacts with GSK3β, thereby stabilizing the MYCN protein in the tumors of the MYCN/NCYM double transgenic mice. Thus, these results suggest that GSK3β inhibition by NCYM stabilizes the MYCN protein both in vitro and in vivo. Furthermore, the survival of MYCN transgenic mice bearing neuroblastoma was improved by treatment with NVP-BEZ235, a dual PI3K/mTOR inhibitor shown to destabilize MYCN via GSK3β activation. In contrast, tumors caused in MYCN/NCYM double transgenic mice showed chemo-resistance to the drug. Collectively, our results show that NCYM is the first de novo evolved protein known to act as an oncopromoting factor in human cancer, and suggest that de novo evolved proteins may functionally characterize human disease.

  2. Cis-Antisense Transcription Gives Rise to Tunable Genetic Switch Behavior: A Mathematical Modeling Approach.

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    Bordoy, Antoni E; Chatterjee, Anushree

    2015-01-01

    Antisense transcription has been extensively recognized as a regulatory mechanism for gene expression across all kingdoms of life. Despite the broad importance and extensive experimental determination of cis-antisense transcription, relatively little is known about its role in controlling cellular switching responses. Growing evidence suggests the presence of non-coding cis-antisense RNAs that regulate gene expression via antisense interaction. Recent studies also indicate the role of transcriptional interference in regulating expression of neighboring genes due to traffic of RNA polymerases from adjacent promoter regions. Previous models investigate these mechanisms independently, however, little is understood about how cells utilize coupling of these mechanisms in advantageous ways that could also be used to design novel synthetic genetic devices. Here, we present a mathematical modeling framework for antisense transcription that combines the effects of both transcriptional interference and cis-antisense regulation. We demonstrate the tunability of transcriptional interference through various parameters, and that coupling of transcriptional interference with cis-antisense RNA interaction gives rise to hypersensitive switches in expression of both antisense genes. When implementing additional positive and negative feed-back loops from proteins encoded by these genes, the system response acquires a bistable behavior. Our model shows that combining these multiple-levels of regulation allows fine-tuning of system parameters to give rise to a highly tunable output, ranging from a simple-first order response to biologically complex higher-order response such as tunable bistable switch. We identify important parameters affecting the cellular switch response in order to provide the design principles for tunable gene expression using antisense transcription. This presents an important insight into functional role of antisense transcription and its importance towards

  3. Evolution of closely linked gene pairs in vertebrate genomes

    NARCIS (Netherlands)

    Franck, E.; Hulsen, T.; Huynen, M.A.; Jong, de W.W.; Lunsen, N.H.; Madsen, O.

    2008-01-01

    The orientation of closely linked genes in mammalian genomes is not random: there are more head-to-head (h2h) gene pairs than expected. To understand the origin of this enrichment in h2h gene pairs, we have analyzed the phylogenetic distribution of gene pairs separated by less than 600 bp of interge

  4. Odd-paired controls frequency doubling in Drosophila segmentation by altering the pair-rule gene regulatory network

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    Clark, Erik; Akam, Michael

    2016-01-01

    The Drosophila embryo transiently exhibits a double-segment periodicity, defined by the expression of seven 'pair-rule' genes, each in a pattern of seven stripes. At gastrulation, interactions between the pair-rule genes lead to frequency doubling and the patterning of 14 parasegment boundaries. In contrast to earlier stages of Drosophila anteroposterior patterning, this transition is not well understood. By carefully analysing the spatiotemporal dynamics of pair-rule gene expression, we demonstrate that frequency-doubling is precipitated by multiple coordinated changes to the network of regulatory interactions between the pair-rule genes. We identify the broadly expressed but temporally patterned transcription factor, Odd-paired (Opa/Zic), as the cause of these changes, and show that the patterning of the even-numbered parasegment boundaries relies on Opa-dependent regulatory interactions. Our findings indicate that the pair-rule gene regulatory network has a temporally modulated topology, permitting the pair-rule genes to play stage-specific patterning roles. DOI: http://dx.doi.org/10.7554/eLife.18215.001 PMID:27525481

  5. The adjacent positioning of co-regulated gene pairs is widely conserved across eukaryotes

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    Arnone James T

    2012-10-01

    Full Text Available Abstract Background Coordinated cell growth and development requires that cells regulate the expression of large sets of genes in an appropriate manner, and one of the most complex and metabolically demanding pathways that cells must manage is that of ribosome biogenesis. Ribosome biosynthesis depends upon the activity of hundreds of gene products, and it is subject to extensive regulation in response to changing cellular conditions. We previously described an unusual property of the genes that are involved in ribosome biogenesis in yeast; a significant fraction of the genes exist on the chromosomes as immediately adjacent gene pairs. The incidence of gene pairing can be as high as 24% in some species, and the gene pairs are found in all of the possible tandem, divergent, and convergent orientations. Results We investigated co-regulated gene sets in S. cerevisiae beyond those related to ribosome biogenesis, and found that a number of these regulons, including those involved in DNA metabolism, heat shock, and the response to cellular stressors were also significantly enriched for adjacent gene pairs. We found that as a whole, adjacent gene pairs were more tightly co-regulated than unpaired genes, and that the specific gene pairing relationships that were most widely conserved across divergent fungal lineages were correlated with those genes that exhibited the highest levels of transcription. Finally, we investigated the gene positions of ribosome related genes across a widely divergent set of eukaryotes, and found a significant level of adjacent gene pairing well beyond yeast species. Conclusion While it has long been understood that there are connections between genomic organization and transcriptional regulation, this study reveals that the strategy of organizing genes from related, co-regulated pathways into pairs of immediately adjacent genes is widespread, evolutionarily conserved, and functionally significant.

  6. Aldehyde Dehydrogenase Gene Superfamily in Populus: Organization and Expression Divergence between Paralogous Gene Pairs.

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    Feng-Xia Tian

    Full Text Available Aldehyde dehydrogenases (ALDHs constitute a superfamily of NAD(P+-dependent enzymes that catalyze the irreversible oxidation of a wide range of reactive aldehydes to their corresponding nontoxic carboxylic acids. ALDHs have been studied in many organisms from bacteria to mammals; however, no systematic analyses incorporating genome organization, gene structure, expression profiles, and cis-acting elements have been conducted in the model tree species Populus trichocarpa thus far. In this study, a comprehensive analysis of the Populus ALDH gene superfamily was performed. A total of 26 Populus ALDH genes were found to be distributed across 12 chromosomes. Genomic organization analysis indicated that purifying selection may have played a pivotal role in the retention and maintenance of PtALDH gene families. The exon-intron organizations of PtALDHs were highly conserved within the same family, suggesting that the members of the same family also may have conserved functionalities. Microarray data and qRT-PCR analysis indicated that most PtALDHs had distinct tissue-specific expression patterns. The specificity of cis-acting elements in the promoter regions of the PtALDHs and the divergence of expression patterns between nine paralogous PtALDH gene pairs suggested that gene duplications may have freed the duplicate genes from the functional constraints. The expression levels of some ALDHs were up- or down-regulated by various abiotic stresses, implying that the products of these genes may be involved in the adaptation of Populus to abiotic stresses. Overall, the data obtained from our investigation contribute to a better understanding of the complexity of the Populus ALDH gene superfamily and provide insights into the function and evolution of ALDH gene families in vascular plants.

  7. A stochastic model for identifying differential gene pair co-expression patterns in prostate cancer progression

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    Mao Yu

    2009-07-01

    Full Text Available Abstract Background The identification of gene differential co-expression patterns between cancer stages is a newly developing method to reveal the underlying molecular mechanisms of carcinogenesis. Most researches of this subject lack an algorithm useful for performing a statistical significance assessment involving cancer progression. Lacking this specific algorithm is apparently absent in identifying precise gene pairs correlating to cancer progression. Results In this investigation we studied gene pair co-expression change by using a stochastic process model for approximating the underlying dynamic procedure of the co-expression change during cancer progression. Also, we presented a novel analytical method named 'Stochastic process model for Identifying differentially co-expressed Gene pair' (SIG method. This method has been applied to two well known prostate cancer data sets: hormone sensitive versus hormone resistant, and healthy versus cancerous. From these data sets, 428,582 gene pairs and 303,992 gene pairs were identified respectively. Afterwards, we used two different current statistical methods to the same data sets, which were developed to identify gene pair differential co-expression and did not consider cancer progression in algorithm. We then compared these results from three different perspectives: progression analysis, gene pair identification effectiveness analysis, and pathway enrichment analysis. Statistical methods were used to quantify the quality and performance of these different perspectives. They included: Re-identification Scale (RS and Progression Score (PS in progression analysis, True Positive Rate (TPR in gene pair analysis, and Pathway Enrichment Score (PES in pathway analysis. Our results show small values of RS and large values of PS, TPR, and PES; thus, suggesting that gene pairs identified by the SIG method are highly correlated with cancer progression, and highly enriched in disease-specific pathways. From

  8. Characterization of a cryptic gene pair from Neisseria gonorrhoeae that is common to pathogenic Neisseria species.

    OpenAIRE

    Seifert, H S; Wilson, D

    1992-01-01

    A pair of genes, each of which produces in Escherichia coli a 20-kDa, periplasmically localized protein that cross-reacts with anti-rpoN monoclonal antibody, was isolated from Neisseria gonorrhoeae. Homologs of the two genes were detected in pathogenic Neisseria species but not in commensal species. These genes are designated cnp1 and cnp2 (cryptic neisserial protein).

  9. Homologue Pairing in Flies and Mammals: Gene Regulation When Two Are Involved

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    Manasi S. Apte

    2012-01-01

    Full Text Available Chromosome pairing is usually discussed in the context of meiosis. Association of homologues in germ cells enables chromosome segregation and is necessary for fertility. A few organisms, such as flies, also pair their entire genomes in somatic cells. Most others, including mammals, display little homologue pairing outside of the germline. Experimental evidence from both flies and mammals suggests that communication between homologues contributes to normal genome regulation. This paper will contrast the role of pairing in transmitting information between homologues in flies and mammals. In mammals, somatic homologue pairing is tightly regulated, occurring at specific loci and in a developmentally regulated fashion. Inappropriate pairing, or loss of normal pairing, is associated with gene misregulation in some disease states. While homologue pairing in flies is capable of influencing gene expression, the significance of this for normal expression remains unknown. The sex chromosomes pose a particularly interesting situation, as females are able to pair X chromosomes, but males cannot. The contribution of homologue pairing to the biology of the X chromosome will also be discussed.

  10. Tbx4/5 gene duplication and the origin of vertebrate paired appendages

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    Minguillon, Carolina; Gibson-Brown, Jeremy J.; Logan, Malcolm P.

    2009-01-01

    Paired fins/limbs are one of the most successful vertebrate innovations, since they are used for numerous fundamental activities, including locomotion, feeding, and breeding. Gene duplication events generate new genes with the potential to acquire novel functions, and two rounds of genome duplication took place during vertebrate evolution. The cephalochordate amphioxus diverged from other chordates before these events and is widely used to deduce the functions of ancestral genes, present in s...

  11. Characterization of a cryptic gene pair from Neisseria gonorrhoeae that is common to pathogenic Neisseria species.

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    Seifert, H S; Wilson, D

    1992-03-01

    A pair of genes, each of which produces in Escherichia coli a 20-kDa, periplasmically localized protein that cross-reacts with anti-rpoN monoclonal antibody, was isolated from Neisseria gonorrhoeae. Homologs of the two genes were detected in pathogenic Neisseria species but not in commensal species. These genes are designated cnp1 and cnp2 (cryptic neisserial protein). PMID:1541538

  12. Contrasted patterns of selective pressure in three recent paralogous gene pairs in the Medicago genus (L.

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    Ho-Huu Joan

    2012-10-01

    Full Text Available Abstract Background Gene duplications are a molecular mechanism potentially mediating generation of functional novelty. However, the probabilities of maintenance and functional divergence of duplicated genes are shaped by selective pressures acting on gene copies immediately after the duplication event. The ratio of non-synonymous to synonymous substitution rates in protein-coding sequences provides a means to investigate selective pressures based on genic sequences. Three molecular signatures can reveal early stages of functional divergence between gene copies: change in the level of purifying selection between paralogous genes, occurrence of positive selection, and transient relaxed purifying selection following gene duplication. We studied three pairs of genes that are known to be involved in an interaction with symbiotic bacteria and were recently duplicated in the history of the Medicago genus (Fabaceae. We sequenced two pairs of polygalacturonase genes (Pg11-Pg3 and Pg11a-Pg11c and one pair of auxine transporter-like genes (Lax2-Lax4 in 17 species belonging to the Medicago genus, and sought for molecular signatures of differentiation between copies. Results Selective histories revealed by these three signatures of molecular differentiation were found to be markedly different between each pair of paralogs. We found sites under positive selection in the Pg11 paralogs while Pg3 has mainly evolved under purifying selection. The most recent paralogs examined Pg11a and Pg11c, are both undergoing positive selection and might be acquiring new functions. Lax2 and Lax4 paralogs are both under strong purifying selection, but still underwent a temporary relaxation of purifying selection immediately after duplication. Conclusions This study illustrates the variety of selective pressures undergone by duplicated genes and the effect of age of the duplication. We found that relaxation of selective constraints immediately after duplication might promote

  13. Identification of genes that promote or antagonize somatic homolog pairing using a high-throughput FISH-based screen.

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    Eric F Joyce

    Full Text Available The pairing of homologous chromosomes is a fundamental feature of the meiotic cell. In addition, a number of species exhibit homolog pairing in nonmeiotic, somatic cells as well, with evidence for its impact on both gene regulation and double-strand break (DSB repair. An extreme example of somatic pairing can be observed in Drosophila melanogaster, where homologous chromosomes remain aligned throughout most of development. However, our understanding of the mechanism of somatic homolog pairing remains unclear, as only a few genes have been implicated in this process. In this study, we introduce a novel high-throughput fluorescent in situ hybridization (FISH technology that enabled us to conduct a genome-wide RNAi screen for factors involved in the robust somatic pairing observed in Drosophila. We identified both candidate "pairing promoting genes" and candidate "anti-pairing genes," providing evidence that pairing is a dynamic process that can be both enhanced and antagonized. Many of the genes found to be important for promoting pairing are highly enriched for functions associated with mitotic cell division, suggesting a genetic framework for a long-standing link between chromosome dynamics during mitosis and nuclear organization during interphase. In contrast, several of the candidate anti-pairing genes have known interphase functions associated with S-phase progression, DNA replication, and chromatin compaction, including several components of the condensin II complex. In combination with a variety of secondary assays, these results provide insights into the mechanism and dynamics of somatic pairing.

  14. The association between paired basic amino acid cleaving enzyme 4 gene haplotype and diastolic blood pressure

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    李建平; 王晓滨; 陈常忠; 徐新; 洪雪梅; 徐希平; 高炜; 霍勇

    2004-01-01

    Background In a previously identified locus linked to hypertension on chromosome 15q, we identified three blood pressure candidate genes: insulin-like growth factor 1 receptor gene (IGF1R), myocyte specific enhancer factor 2A gene (MEF2A), and paired basic amino acid cleaving enzyme 4 gene (PACE4). In this study, we tested their associations with hypertension using haplotype analysis.Methods A total of 288 unrelated individuals, including 163 high diastolic blood pressure (DBP) subjects and 125 normal DBP subjects were enrolled in this case-control study. Twenty single nucleotide polymorphisms (SNPs) in the three genes were genotyped using polymerase chain reaction followed by restriction enzyme digestion. Haplotype analysis was accomplished in the following stages: (1) pair-wise linkage disequilibrium test among SNPs on the same gene was performed to explore blocks in which recombination is very unlikely to happen; (2) Estimation-Maximization algorithm was applied to estimate haplotype frequencies in each block; (3) the chi-square test was used to examine the specific haplotype difference, and a permutation test was used to examine the overall haplotype profile difference between cases and controls in each block.Results An estimated haplotype "CCCCG" frequency in the haplotype block on the PACE4 gene was significantly higher in high DBP cases than in controls (P<0.01). The overall estimated haplotype profile in this block was also significantly different between the cases and the controls (P<0.001). This association indicates. Conclusions This study for the first time demonstrated that PACE4 gene may play an important role in the regulation of DBP. This association indicates that variations influencing DBP resides in or near this genomic region.

  15. Sense-antisense gene-pairs in breast cancer and associated pathological pathways

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    Grinchuk, Oleg V.; Motakis, Efthymios; Yenamandra, Surya Pavan; Ow, Ghim Siong; Jenjaroenpun, Piroon; Tang, Zhiqun; Yarmishyn, Aliaksandr A.; Ivshina, Anna V.; Kuznetsov, Vladimir A.

    2015-01-01

    More than 30% of human protein-coding genes form hereditary complex genome architectures composed of sense-antisense (SA) gene pairs (SAGPs) transcribing their RNAs from both strands of a given locus. Such architectures represent important novel components of genome complexity contributing to gene expression deregulation in cancer cells. Therefore, the architectures might be involved in cancer pathways and, in turn, be used for novel drug targets discovery. However, the global roles of SAGPs in cancer pathways has not been studied. Here we investigated SAGPs associated with breast cancer (BC)-related pathways using systems biology, prognostic survival and experimental methods. Gene expression analysis identified 73 BC-relevant SAGPs that are highly correlated in BC. Survival modelling and metadata analysis of the 1161 BC patients allowed us to develop a novel patient prognostic grouping method selecting the 12 survival-significant SAGPs. The qRT-PCR-validated 12-SAGP prognostic signature reproducibly stratified BC patients into low- and high-risk prognostic subgroups. The 1381 SAGP-defined differentially expressed genes common across three studied cohorts were identified. The functional enrichment analysis of these genes revealed the GABPA gene network, including BC-relevant SAGPs, specific gene sets involved in cell cycle, spliceosomal and proteasomal pathways. The co-regulatory function of GABPA in BC cells was supported using siRNA knockdown studies. Thus, we demonstrated SAGPs as the synergistically functional genome architectures interconnected with cancer-related pathways and associated with BC patient clinical outcomes. Taken together, SAGPs represent an important component of genome complexity which can be used to identify novel aspects of coordinated pathological gene networks in cancers. PMID:26517092

  16. Linkage of the VNTR/insulin-gene and type I diabetes mellitus: Increased gene sharing in affected sibling pairs

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    Owerbach, D.; Gabbay, K.H. (Baylor College of Medicine, Houston, TX (United States))

    1994-05-01

    Ninety-six multiplex type I diabetic families were typed at the 5' flanking region of the insulin gene by using a PCR assay that better resolves the VNTR into multiple alleles. Affected sibling pairs shared 2, 1, and 0 VNTR alleles - identical by descent - at a frequency of .47, .45, and .08, respectively, a ratio that deviated from the expected 1:2:1 ratio (P<.001). These results confirm linkage of the chromosome 11p15.5 region with type I diabetes mellitus susceptibility. 20 refs., 2 tabs.

  17. FusionQ: a novel approach for gene fusion detection and quantification from paired-end RNA-Seq

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    Liu, Chenglin; Ma, Jinwen; Chang, ChungChe (Jeff); Zhou, Xiaobo

    2013-01-01

    Background Gene fusions, which result from abnormal chromosome rearrangements, are a pathogenic factor in cancer development. The emerging RNA-Seq technology enables us to detect gene fusions and profile their features. Results In this paper, we proposed a novel fusion detection tool, FusionQ, based on paired-end RNA-Seq data. This tool can detect gene fusions, construct the structures of chimerical transcripts, and estimate their abundances. To confirm the read alignment on both sides of a f...

  18. Systems biology-guided identification of synthetic lethal gene pairs and its potential use to discover antibiotic combinations

    DEFF Research Database (Denmark)

    Aziz, Ramy K.; Monk, Jonathan M.; Lewis, R. M.;

    2015-01-01

    and phenotype, but their ability to accurately simulate gene-gene interactions has not been investigated extensively. Here we assess how accurately a metabolic model for Escherichia coli computes one particular type of gene-gene interaction, synthetic lethality, and find that the accuracy rate is between 25......% and 43%. The most common failure modes were incorrect computation of single gene essentiality and biological information that was missing from the model. Moreover, we performed virtual and biological screening against several synthetic lethal pairs to explore whether two-compound formulations could...

  19. Transcriptional regulation of bidirectional gene pairs by 17-β-estradiol in MCF-7 breast cancer cells

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    S.A.B. Garcia

    2011-02-01

    Full Text Available Using cDNA microarray analysis, we previously identified a set of differentially expressed genes in primary breast tumors based on the status of estrogen and progesterone receptors. In the present study, we performed an integrated computer-assisted and manual search of potential estrogen response element (ERE binding sites in the promoter region of these genes to characterize their potential to be regulated by estrogen receptors (ER. Publicly available databases were used to annotate the position of these genes in the genome and to extract a 5’flanking region 2 kb upstream to 2 kb downstream of the transcription start site for transcription binding site analysis. The search for EREs and other binding sites was performed using several publicly available programs. Overall, approximately 40% of the genes analyzed were potentially able to be regulated by estrogen via ER. In addition, 17% of these genes are located very close to other genes organized in a head-to-head orientation with less than 1.0 kb between their transcript units, sharing a bidirectional promoter, and could be classified as bidirectional gene pairs. Using quantitative real-time PCR, we further investigated the effects of 17β-estradiol and antiestrogens on the expression of the bidirectional gene pairs in MCF-7 breast cancer cells. Our results showed that some of these gene pairs, such as TXNDC9/EIF5B, GALNS/TRAPPC2L, and SERINC1/PKIB, are modulated by 17β-estradiol via ER in MCF-7 breast cancer cells. Here, we also characterize the promoter region of potential ER-regulated genes and provide new information on the transcriptional regulation of bidirectional gene pairs.

  20. Gene expression profiling of lymphoblasts from autistic and nonaffected sib pairs: altered pathways in neuronal development and steroid biosynthesis.

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    Valerie W Hu

    Full Text Available Despite the identification of numerous autism susceptibility genes, the pathobiology of autism remains unknown. The present "case-control" study takes a global approach to understanding the molecular basis of autism spectrum disorders based upon large-scale gene expression profiling. DNA microarray analyses were conducted on lymphoblastoid cell lines from over 20 sib pairs in which one sibling had a diagnosis of autism and the other was not affected in order to identify biochemical and signaling pathways which are differentially regulated in cells from autistic and nonautistic siblings. Bioinformatics and gene ontological analyses of the data implicate genes which are involved in nervous system development, inflammation, and cytoskeletal organization, in addition to genes which may be relevant to gastrointestinal or other physiological symptoms often associated with autism. Moreover, the data further suggests that these processes may be modulated by cholesterol/steroid metabolism, especially at the level of androgenic hormones. Elevation of male hormones, in turn, has been suggested as a possible factor influencing susceptibility to autism, which affects approximately 4 times as many males as females. Preliminary metabolic profiling of steroid hormones in lymphoblastoid cell lines from several pairs of siblings reveals higher levels of testosterone in the autistic sibling, which is consistent with the increased expression of two genes involved in the steroidogenesis pathway. Global gene expression profiling of cultured cells from ASD probands thus serves as a window to underlying metabolic and signaling deficits that may be relevant to the pathobiology of autism.

  1. A novel missense mutation of the paired box 3 gene in a Turkish family with Waardenburg syndrome type 1

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    Hazan, Filiz; Ozturk, A. Taylan; Adibelli, Hamit; Unal, Nurettin; Tukun, Ajlan

    2013-01-01

    Purpose Screening of mutations in the paired box 3 (PAX3) gene in three generations of a Turkish family with Waardenburg syndrome type 1 (WS1). Methods WS1 was diagnosed in a 13-month-old girl according to the WS Consortium criteria. Detailed family history of the proband revealed eight affected members in three generations. Routine clinical and audiological examination and ophthalmologic evaluation were performed on eight affected and five healthy members of the study family. Dystopia cantho...

  2. The hydrocephalus inducing gene product, Hydin, positions axonemal central pair microtubules

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    Farr Helen

    2007-08-01

    Full Text Available Abstract Background Impairment of cilia and flagella function underlies a growing number of human genetic diseases. Mutations in hydin in hy3 mice cause lethal communicating hydrocephalus with early onset. Hydin was recently identified as an axonemal protein; however, its function is as yet unknown. Results Here we use RNAi in Trypanosoma brucei to address this issue and demonstrate that loss of Hydin causes slow growth and a loss of cell motility. We show that two separate defects in newly-formed flagellar central pair microtubules underlie the loss of cell motility. At early time-points after RNAi induction, the central pair becomes mispositioned, while at later time points the central pair is lost. While the basal body is unaffected, both defects originate at the basal plate, reflecting a role for TbHydin throughout the length of the central pair. Conclusion Our data provide the first evidence of Hydin's role within the trypanosome axoneme, and reveal central pair anomalies and thus impairment of ependymal ciliary motility as the likely cause of the hydrocephalus observed in the hy3 mouse.

  3. A Pair of Novel Primers for Universal Detection of the NS1 Gene from Various Bluetongue Virus Serotypes

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    Hui-qiong YIN; Gai-ping ZHANG; Hong ZHANG; Jin-gang ZHANG

    2008-01-01

    Twenty five serotypes of Bluetongue virus (BTV) have been identified worldwide. Rapid and reliable methods of virus universal detection are essential for fighting against bluetongue (BT). We have therefore developed and evaluated a pair of primers which can detect various serotypes of BTV by RT-PCR. Analysis of the viral protein 7 (VP7) and the non-structural protein (NS1) gene from different serotypes of BTV by DNAstar showed that the 5' end of the NS1 gene is the most conserved region. The primer pairs (P1 and P2) were designed based on the highly conserved region of NS1. The novel primers were evaluated by detecting BTV serotypes 1, 3, 5, 8, 10, 11, 21 and 22. The specificity of the primers was estimated by comparing to gene sequences of viruses published in GenBank, and further assessed by detecting BTV serotype 1-12 and Epizootic hemorrhagic disease virus (EHDV) serotype 1-4. The sensitivity and repeatability of PCR with the novel primers were evaluated by successfully detecting the recombinant plasmid pGEM-T121 containing the diagnosed nucleotide sequence. Our results suggest that these unique primers can be used in high throughout and universal detection of the NS1 gene from various BTV serotypes.

  4. Targeted Myostatin Gene Editing in Multiple Mammalian Species Directed by a Single Pair of TALE Nucleases

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    Li XU; Zhao, Piming; Mariano, Andrew; Han, Renzhi

    2013-01-01

    Myostatin (MSTN) is a negative regulator of skeletal muscle mass. Strategies to block myostatin signaling pathway have been extensively pursued to increase muscle mass in various disease settings including muscular dystrophy. Here, we report a new class of reagents based on transcription activator-like effector nucleases (TALENs) to disrupt myostatin expression at the genome level. We designed a pair of MSTN TALENs to target a highly conserved sequence in the coding region of the myostatin ge...

  5. Biphasic Hoxd gene expression in shark paired fins reveals an ancient origin of the distal limb domain.

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    Renata Freitas

    Full Text Available The evolutionary transition of fins to limbs involved development of a new suite of distal skeletal structures, the digits. During tetrapod limb development, genes at the 5' end of the HoxD cluster are expressed in two spatiotemporally distinct phases. In the first phase, Hoxd9-13 are activated sequentially and form nested domains along the anteroposterior axis of the limb. This initial phase patterns the limb from its proximal limit to the middle of the forearm. Later in development, a second wave of transcription results in 5' HoxD gene expression along the distal end of the limb bud, which regulates formation of digits. Studies of zebrafish fins showed that the second phase of Hox expression does not occur, leading to the idea that the origin of digits was driven by addition of the distal Hox expression domain in the earliest tetrapods. Here we test this hypothesis by investigating Hoxd gene expression during paired fin development in the shark Scyliorhinus canicula, a member of the most basal lineage of jawed vertebrates. We report that at early stages, 5'Hoxd genes are expressed in anteroposteriorly nested patterns, consistent with the initial wave of Hoxd transcription in teleost and tetrapod paired appendages. Unexpectedly, a second phase of expression occurs at later stages of shark fin development, in which Hoxd12 and Hoxd13 are re-expressed along the distal margin of the fin buds. This second phase is similar to that observed in tetrapod limbs. The results indicate that a second, distal phase of Hoxd gene expression is not uniquely associated with tetrapod digit development, but is more likely a plesiomorphic condition present the common ancestor of chondrichthyans and osteichthyans. We propose that a temporal extension, rather than de novo activation, of Hoxd expression in the distal part of the fin may have led to the evolution of digits.

  6. LDGIdb: a database of gene interactions inferred from long-range strong linkage disequilibrium between pairs of SNPs

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    Wang Ming-Chih

    2012-05-01

    Full Text Available Abstract Background Complex human diseases may be associated with many gene interactions. Gene interactions take several different forms and it is difficult to identify all of the interactions that are potentially associated with human diseases. One approach that may fill this knowledge gap is to infer previously unknown gene interactions via identification of non-physical linkages between different mutations (or single nucleotide polymorphisms, SNPs to avoid hitchhiking effect or lack of recombination. Strong non-physical SNP linkages are considered to be an indication of biological (gene interactions. These interactions can be physical protein interactions, regulatory interactions, functional compensation/antagonization or many other forms of interactions. Previous studies have shown that mutations in different genes can be linked to the same disorders. Therefore, non-physical SNP linkages, coupled with knowledge of SNP-disease associations may shed more light on the role of gene interactions in human disorders. A user-friendly web resource that integrates information about non-physical SNP linkages, gene annotations, SNP information, and SNP-disease associations may thus be a good reference for biomedical research. Findings Here we extracted the SNPs located within the promoter or exonic regions of protein-coding genes from the HapMap database to construct a database named the Linkage-Disequilibrium-based Gene Interaction database (LDGIdb. The database stores 646,203 potential human gene interactions, which are potential interactions inferred from SNP pairs that are subject to long-range strong linkage disequilibrium (LD, or non-physical linkages. To minimize the possibility of hitchhiking, SNP pairs inferred to be non-physically linked were required to be located in different chromosomes or in different LD blocks of the same chromosomes. According to the genomic locations of the involved SNPs (i.e., promoter, untranslated region (UTR and

  7. Perception of the usefulness of drug/gene pairs and barriers for pharmacogenomics in Latin America.

    Science.gov (United States)

    Quinones, Luis Abel; Lavanderos, Maria Alejandra; Cayun, Juan Pablo; Garcia-Martin, Elena; Agundez, Jose Augusto; Caceres, Dante Daniel; Roco, Angela Margarita; Morales, Jorge E; Herrera, Luisa; Encina, Gonzalo; Isaza, Carlos Alberto; Redal, Maria Ana; Larovere, Laura; Soria, Nestor Walter; Eslava-Schmalbach, Javier; Castaneda-Hernandez, Gilberto; Lopez-Cortes, Andres; Magno, Luiz Alexandre; Lopez, Marisol; Chiurillo, Miguel Angel; Rodeiro, Idania; Castro de Guerra, Dinorah; Teran, Enrique; Estevez-Carrizo, Francisco; Lares-Assef, Ismael

    2014-02-01

    Pharmacogenetics and Pharmacogenomics areas are currently emerging fields focused to manage pharmacotherapy that may prevent undertreatment while avoiding associated drug toxicity in patients. Large international differences in the awareness and in the use of pharmacogenomic testing are presumed, but not well assessed to date. In the present study we review the awareness of Latin American scientific community about pharmacogenomic testing and the perceived barriers for their clinical application. In order to that, we have compiled information from 9 countries of the region using a structured survey which is compared with surveys previously performed in USA and Spain. The most relevant group of barriers was related to the need for clear guidelines for the use of pharmacogenomics in clinical practice, followed by insufficient awareness about pharmacogenomics among clinicians and the absence of regulatory institutions that facilitate the use of pharmacogenetic tests. The higher ranked pairs were TPMT/thioguanine, TPMT/azathioprine, CYP2C9/warfarin, UGT1A1/irinotecan, CYP2D6/amitriptiline, CYP2C19/citalopram and CYP2D6/clozapine. The lower ranked pairs were SLCO1B1/simvastatin, CYP2D6/metoprolol and GP6D/chloroquine. Compared with USA and Spanish surveys, 25 pairs were of lower importance for Latin American respondents. Only CYP2C19/esomeprazole, CYP2C19/omeprazole, CYP2C19/celecoxib and G6PD/dapsone were ranked higher or similarly to the USA and Spanish surveys. Integration of pharmacogenomics in clinical practice needs training of healthcare professionals and citizens, but in addition legal and regulatory guidelines and safeguards will be needed. We propose that the approach offered by pharmacogenomics should be incorporated into the decision-making plans in Latin America.

  8. De novo assembly, gene annotation and marker development using Illumina paired-end transcriptome sequences in celery (Apium graveolens L..

    Directory of Open Access Journals (Sweden)

    Nan Fu

    Full Text Available BACKGROUND: Celery is an increasing popular vegetable species, but limited transcriptome and genomic data hinder the research to it. In addition, a lack of celery molecular markers limits the process of molecular genetic breeding. High-throughput transcriptome sequencing is an efficient method to generate a large transcriptome sequence dataset for gene discovery, molecular marker development and marker-assisted selection breeding. PRINCIPAL FINDINGS: Celery transcriptomes from four tissues were sequenced using Illumina paired-end sequencing technology. De novo assembling was performed to generate a collection of 42,280 unigenes (average length of 502.6 bp that represent the first transcriptome of the species. 78.43% and 48.93% of the unigenes had significant similarity with proteins in the National Center for Biotechnology Information (NCBI non-redundant protein database (Nr and Swiss-Prot database respectively, and 10,473 (24.77% unigenes were assigned to Clusters of Orthologous Groups (COG. 21,126 (49.97% unigenes harboring Interpro domains were annotated, in which 15,409 (36.45% were assigned to Gene Ontology(GO categories. Additionally, 7,478 unigenes were mapped onto 228 pathways using the Kyoto Encyclopedia of Genes and Genomes Pathway database (KEGG. Large numbers of simple sequence repeats (SSRs were indentified, and then the rate of successful amplication and polymorphism were investigated among 31 celery accessions. CONCLUSIONS: This study demonstrates the feasibility of generating a large scale of sequence information by Illumina paired-end sequencing and efficient assembling. Our results provide a valuable resource for celery research. The developed molecular markers are the foundation of further genetic linkage analysis and gene localization, and they will be essential to accelerate the process of breeding.

  9. Over half of breakpoints in gene pairs involved in cancer-specific recurrent translocations are mapped to human chromosomal fragile sites

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    Pierce Levi CT

    2009-01-01

    Full Text Available Abstract Background Gene rearrangements such as chromosomal translocations have been shown to contribute to cancer development. Human chromosomal fragile sites are regions of the genome especially prone to breakage, and have been implicated in various chromosome abnormalities found in cancer. However, there has been no comprehensive and quantitative examination of the location of fragile sites in relation to all chromosomal aberrations. Results Using up-to-date databases containing all cancer-specific recurrent translocations, we have examined 444 unique pairs of genes involved in these translocations to determine the correlation of translocation breakpoints and fragile sites in the gene pairs. We found that over half (52% of translocation breakpoints in at least one gene of these gene pairs are mapped to fragile sites. Among these, we examined the DNA sequences within and flanking three randomly selected pairs of translocation-prone genes, and found that they exhibit characteristic features of fragile DNA, with frequent AT-rich flexibility islands and the potential of forming highly stable secondary structures. Conclusion Our study is the first to examine gene pairs involved in all recurrent chromosomal translocations observed in tumor cells, and to correlate the location of more than half of breakpoints to positions of known fragile sites. These results provide strong evidence to support a causative role for fragile sites in the generation of cancer-specific chromosomal rearrangements.

  10. Evaluation of 16S rRNA Gene Primer Pairs for Monitoring Microbial Community Structures Showed High Reproducibility within and Low Comparability between Datasets Generated with Multiple Archaeal and Bacterial Primer Pairs.

    Science.gov (United States)

    Fischer, Martin A; Güllert, Simon; Neulinger, Sven C; Streit, Wolfgang R; Schmitz, Ruth A

    2016-01-01

    The application of next-generation sequencing technology in microbial community analysis increased our knowledge and understanding of the complexity and diversity of a variety of ecosystems. In contrast to Bacteria, the archaeal domain was often not particularly addressed in the analysis of microbial communities. Consequently, established primers specifically amplifying the archaeal 16S ribosomal gene region are scarce compared to the variety of primers targeting bacterial sequences. In this study, we aimed to validate archaeal primers suitable for high throughput next generation sequencing. Three archaeal 16S primer pairs as well as two bacterial and one general microbial 16S primer pairs were comprehensively tested by in-silico evaluation and performing an experimental analysis of a complex microbial community of a biogas reactor. The results obtained clearly demonstrate that comparability of community profiles established using different primer pairs is difficult. 16S rRNA gene data derived from a shotgun metagenome of the same reactor sample added an additional perspective on the community structure. Furthermore, in-silico evaluation of primers, especially those for amplification of archaeal 16S rRNA gene regions, does not necessarily reflect the results obtained in experimental approaches. In the latter, archaeal primer pair ArchV34 showed the highest similarity to the archaeal community structure compared to observed by the metagenomic approach and thus appears to be the appropriate for analyzing archaeal communities in biogas reactors. However, a disadvantage of this primer pair was its low specificity for the archaeal domain in the experimental application leading to high amounts of bacterial sequences within the dataset. Overall our results indicate a rather limited comparability between community structures investigated and determined using different primer pairs as well as between metagenome and 16S rRNA gene amplicon based community structure analysis

  11. Cognitive Functioning in Affected Sibling Pairs with ADHD: Familial Clustering and Dopamine Genes

    Science.gov (United States)

    Loo, Sandra K.; Rich, Erika Carpenter; Ishii, Janeen; McGough, James; McCracken, James; Nelson, Stanley; Smalley, Susan L.

    2008-01-01

    Background: This paper examines familiality and candidate gene associations of cognitive measures as potential endophenotypes in attention-deficit/hyperactivity disorder (ADHD). Methods: The sample consists of 540 participants, aged 6 to 18, who were diagnosed with ADHD from 251 families recruited for a larger genetic study of ADHD. All members of…

  12. Correlation of global and gene-specific DNA methylation in maternal-infant pairs.

    Directory of Open Access Journals (Sweden)

    Molly L Kile

    Full Text Available The inheritance of DNA methylation patterns is a popular theory to explain the influence of parental genetic and environmental factors on the phenotype of their offspring but few studies have examined this relationship in humans. Using 120 paired maternal-umbilical cord blood samples randomly selected from a prospective birth cohort in Bangladesh, we quantified DNA methylation by pyrosequencing seven CpG positions in the promoter region of p16, four CpG positions in the promoter region of p53, LINE-1 and Alu. Positive correlations were observed between maternal and umbilical cord blood at p16, LINE-1, and Alu but not p53. Multiple linear regression models observed a significant association between maternal and umbilical cord blood at LINE-1 and Alu (LINE-1: β = 0.63, p<0.0001; Alu: β = 0.28, p = 0.009. After adjusting for multiple comparisons, maternal methylation of p16 at position 4 significantly predicted methylation at the same position in umbilical cord blood (β = 0.43, p = <0.0001. These models explained 48%, 5% and 16% of the observed variability in umbilical cord %5mC for LINE-1, Alu and p16 at position 4, respectively. These results suggest that DNA methylation in maternal blood was correlated with her offspring at LINE-1, Alu, and p16 but not p53. Additional studies are needed to confirm whether these observed associations were due to the inheritance of epigenetic events or the shared environment between mother and fetus. Future studies should also use a multi-generational family-based design that would quantify both maternal and paternal contributions to DNA methylation in offspring across more than one generation.

  13. Transfer of alien genes into cultivated wheat and triticale genotypes by the use of homoeologous pairing mutants

    International Nuclear Information System (INIS)

    Alien species, both wild and cultivated, can greatly help in broadening the genetic base of presently cultivated wheats, thanks to the large reservoir of useful genes they contain. However, introduction of substantial portions of alien genomes into cultivated genotypes in most cases makes them unfit for commercial use, due to the contemporary presence of positive and negative traits carried by the alien material. Therefore, what appears to be generally needed is to obtain transfers that include the shortest possible alien segment(s). Preliminary results are reported here of a work aimed at transferring to common wheat a gene for resistance to powdery mildew derived from Triticum longissimum, a diploid species with a very closely related genome to the B genome of polyploid wheats. As donor line a T. longissimum ditelosomic addition to Chinese Spring was used. The alien telo, bearing the resistance gene(s), corresponded to the short arm of chromosome G, whose homoeology with the group-3 chromosomes of common wheat had been established. A transfer scheme has been adopted that, within two generations of crosses, of which one with the ph1 mutant of Chinese Spring, provided plants having in single dose the alien telocentric, its wheat homoeologue and a 5B/ph1 chromosome. Such plants were then pollinated by the standard euploid for the recovery of recombinant types. The frequency of recombinant resistant plants detected so far suggests that the pairing frequency between the alien telo and its wheat homoeologues was quite high, most probably ranging between 25 and 30%, on an average. Extensive use is also being made of the ph1 6X triticale as one the parents in various wide crosses with different D genome sources, including common wheat and synthetic amphiploids. The results show that the ph1 mediated recombination is a promising method for triticale improvement. 18 refs, 1 fig, 2 tabs

  14. Reverse PCA, a systematic approach for identifying genes important for the physical interaction between protein pairs.

    Directory of Open Access Journals (Sweden)

    Ifat Lev

    Full Text Available Protein-protein interactions (PPIs are of central importance for many areas of biological research. Several complementary high-throughput technologies have been developed to study PPIs. The wealth of information that emerged from these technologies led to the first maps of the protein interactomes of several model organisms. Many changes can occur in protein complexes as a result of genetic and biochemical perturbations. In the absence of a suitable assay, such changes are difficult to identify, and thus have been poorly characterized. In this study, we present a novel genetic approach (termed "reverse PCA" that allows the identification of genes whose products are required for the physical interaction between two given proteins. Our assay starts with a yeast strain in which the interaction between two proteins of interest can be detected by resistance to the drug, methotrexate, in the context of the protein-fragment complementation assay (PCA. Using synthetic genetic array (SGA technology, we can systematically screen mutant libraries of the yeast Saccharomyces cerevisiae to identify those mutations that disrupt the physical interaction of interest. We were able to successfully validate this novel approach by identifying mutants that dissociate the conserved interaction between Cia2 and Mms19, two proteins involved in Iron-Sulfur protein biogenesis and genome stability. This method will facilitate the study of protein structure-function relationships, and may help in elucidating the mechanisms that regulate PPIs.

  15. TMPRSS2-ERG Gene Fusion Causing ERG Overexpression Precedes Chromosome Copy Number Changes in Prostate Carcinomas, Paired HGPIN Lesions

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    Nuno Cerveira

    2006-10-01

    Full Text Available TMPRSS2-ETS gene fusions have been found recurrently in prostate carcinomas, but not in the presumed precursor lesion, high-grade prostatic intraepithelial neoplasia (HGPIN. However, HGPIN lesions may share chromosomal changes with prostate cancer. To determine the relative order of genetic events in prostate carcinogenesis, we have analyzed 34 prostate carcinomas, 19 paired HGPIN lesions, 14 benign prostate hyperplasias, 11 morphologically normal prostatic tissues for TMPRSS2-ERG, TMPRSS2-ETV1 rearrangements, genomic imbalances. TMPRSS2 exon 1 was fused in-frame with ERG exon 4 in 17 of 34 (50% prostate carcinomas, in 4 of 19 (21% HGPIN lesions, but in none of controls. The findings were further validated by sequencing analysis, by the real-time polymerase chain reaction quantification of TMPRSS2-ERG fusion transcript, the ERG exons 5/6:exons 1/2 expression ratio. Chromosome copy number changes were detected by comparative genomic hybridization in 42% of clinically confined carcinomas, in none of the 16 HGPIN lesions analyzed. We demonstrate for the first time that the TMPRSS2-ERG fusion gene can be detected in a proportion of HGPIN lesions, that this molecular rearrangement is an early event that may precede chromosome-level alterations in prostate carcinogenesis.

  16. Towards a clinical practice guide in pharmacogenomics testing for functional polymorphisms of drug-metabolising enzymes. Gene/drug pairs and barriers perceived in Spain.

    Directory of Open Access Journals (Sweden)

    José A G Agúndez

    2012-11-01

    Full Text Available The development of clinical practice recommendations or guidelines for the clinical use of biomarkers is an issue of great importance with regard to adverse drug reactions. The potential of pharmacogenomic biomarkers has been extensively investigated in recent years. However, several barriers to implementing the use of pharmacogenomics testing exist. We conducted a survey among members of the Spanish Societies of Pharmacology and Clinical Pharmacology to obtain information about the perception of such barriers and to compare the perceptions of participants about the relative importance of major gene/drug pairs.Of 11 potential barriers, the highest importance was attributed to lack of institutional support for pharmacogenomics testing, and to the issues related to the lack of guidelines. Of the proposed gene/drug pairs the highest importance was assigned to HLA-B/abacavir, UGT1A1/irinotecan and CYP2D6/tamoxifen. In this perspective article we compare the relative importance of 29 gene/drug pairs in the Spanish study with that of the same pairs in the American Society for Clinical Pharmacology & Therapeutics study, and we provide suggestions and areas of focus to develop a guide for clinical practice in pharmacogenomics testing.

  17. Power of non-parametric linkage analysis in mapping genes contributing to human longevity in long-lived sib-pairs

    DEFF Research Database (Denmark)

    Tan, Qihua; Zhao, J H; Iachine, I;

    2004-01-01

    This report investigates the power issue in applying the non-parametric linkage analysis of affected sib-pairs (ASP) [Kruglyak and Lander, 1995: Am J Hum Genet 57:439-454] to localize genes that contribute to human longevity using long-lived sib-pairs. Data were simulated by introducing a recently...... developed statistical model for measuring marker-longevity associations [Yashin et al., 1999: Am J Hum Genet 65:1178-1193], enabling direct power comparison between linkage and association approaches. The non-parametric linkage (NPL) scores estimated in the region harboring the causal allele are evaluated...... in case of a dominant effect. Although the power issue may depend heavily on the true genetic nature in maintaining survival, our study suggests that results from small-scale sib-pair investigations should be referred with caution, given the complexity of human longevity....

  18. Expression of human AID in yeast induces mutations in context similar to the context of somatic hypermutation at G-C pairs in immunoglobulin genes

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    Kunkel Thomas A

    2005-06-01

    Full Text Available Abstract Background Antibody genes are diversified by somatic hypermutation (SHM, gene conversion and class-switch recombination. All three processes are initiated by the activation-induced deaminase (AID. According to a DNA deamination model of SHM, AID converts cytosine to uracil in DNA sequences. The initial deamination of cytosine leads to mutation and recombination in pathways involving replication, DNA mismatch repair and possibly base excision repair. The DNA sequence context of mutation hotspots at G-C pairs during SHM is DGYW/WRCH (G-C is a hotspot position, R = A/G, Y = T/C, W = A/T, D = A/G/T. Results To investigate the mechanisms of AID-induced mutagenesis in a model system, we studied the genetic consequences of AID expression in yeast. We constructed a yeast vector with an artificially synthesized human AID gene insert using codons common to highly expressed yeast genes. We found that expression of the artificial hAIDSc gene was moderately mutagenic in a wild-type strain and highly mutagenic in an ung1 uracil-DNA glycosylase-deficient strain. A majority of mutations were at G-C pairs. In the ung1 strain, C-G to T-A transitions were found almost exclusively, while a mixture of transitions with 12% transversions was characteristic in the wild-type strain. In the ung1 strain mutations that could have originated from deamination of the transcribed stand were found more frequently. In the wild-type strain, the strand bias was reversed. DGYW/WRCH motifs were preferential sites of mutations. Conclusion The results are consistent with the hypothesis that AID-mediated deamination of DNA is a major cause of mutations at G-C base pairs in immunoglobulin genes during SHM. The sequence contexts of mutations in yeast induced by AID and those of somatic mutations at G-C pairs in immunoglobulin genes are significantly similar. This indicates that the intrinsic substrate specificity of AID itself is a primary determinant of mutational hotspots at G

  19. Transcription modulation in vitro of the fibroin gene exerted by a 200-base-pair region upstream from the "TATA" box.

    OpenAIRE

    Tsuda, M; Suzuki, Y

    1983-01-01

    We have previously reported that the 5'-flanking sequence upstream from the "TATA" box modulates the faithful transcription initiation of the fibroin gene in a homologous whole cell extract prepared from the silk glands, whereas such a modulating effect is not observed in a HeLa cell extract. Subsequently we have determined that major signals responsible for the modulating effect are located within a 200-base-pair region upstream from the TATA box, mainly in a distal region between nucleotide...

  20. Paired Box Gene 8-Peroxisome Proliferator-Activated Receptor-γ Fusion Protein and Loss of Phosphatase and Tensin Homolog Synergistically Cause Thyroid Hyperplasia in Transgenic Mice

    OpenAIRE

    Diallo-Krou, Ericka; Yu, Jingcheng; Colby, Lesley A.; Inoki, Ken; Wilkinson, John E.; Thomas, Dafydd G.; Giordano, Thomas J.; Koenig, Ronald J.

    2009-01-01

    Approximately 35% of follicular thyroid carcinomas and a small fraction of follicular adenomas are associated with a t(2;3)(q13;p25) chromosomal translocation that fuses paired box gene 8 (PAX8) with the peroxisome proliferator-activated receptor-γ gene (PPARG), resulting in expression of a PAX8-PPARγ fusion protein, PPFP. The mechanism by which PPFP contributes to follicular thyroid neoplasia is poorly understood. Therefore, we have created mice with thyroid-specific expression of PPFP. At 1...

  1. Structure and expression of a tandem gene pair in Leishmania donovani that encodes a protein structurally homologous to eucaryotic cation-transporting ATPases.

    OpenAIRE

    Meade, J C; Shaw, J; Lemaster, S; Gallagher, G.; Stringer, J R

    1987-01-01

    An oligonucleotide probe was used to clone a cation-transporting ATPase gene from the genome of Leishmania donovani. The nucleotide sequence of the gene contained a 2,922-base-pair open reading frame that was predicted to encode a 107,406-dalton protein composed of 974 amino acids. The predicted L. donovani protein contained all the structural and functional domains expected to be present in a cation-transporting ATPase of the aspartyl phosphate class. The nucleotide sequence encoding the ATP...

  2. Association of ADH and ALDH Genes With Alcohol Dependence in the Irish Affected Sib Pair Study of Alcohol Dependence (IASPSAD) Sample

    Science.gov (United States)

    Kuo, Po-Hsiu; Kalsi, Gursharan; Prescott, Carol A.; Hodgkinson, Colin A.; Goldman, David; van den Oord, Edwin J.; Alexander, Jeffry; Jiang, Cizhong; Sullivan, Patrick F.; Patterson, Diana G.; Walsh, Dermot; Kendler, Kenneth S.; Riley, Brien P.

    2008-01-01

    Background: The genes coding for ethanol metabolism enzymes [alcohol dehydrogenase (ADH) and aldehyde dehydrogenase (ALDH)] have been widely studied for their influence on the risk to develop alcohol dependence (AD). However, the relation between polymorphisms of these metabolism genes and AD in Caucasian subjects has not been clearly established. The present study examined evidence for the association of alcohol metabolism genes with AD in the Irish Affected Sib Pair Study of alcohol dependence. Methods: We conducted a case–control association study with 575 independent subjects who met Diagnostic and Statistical Manual of Mental Disorders, 4th Edition, AD diagnosis and 530 controls. A total of 77 single nucleotide polymorphisms (SNPs) in the seven ADH (ADH1-7) and two ALDH genes (ALDH1A1 and ALDH2) were genotyped using the Illumina GoldenGate protocols. Several statistical procedures were implemented to control for false discoveries. Results: All markers with minor allele frequency greater than 0.01 were in Hardy–Weinberg equilibrium. Numerous SNPs in ADH genes showed association with AD, including one marker in the coding region of ADH1C (rs1693482 in exon6, Ile271Gln). Haplotypic association was observed in the ADH5 and ADH1C genes, and in a long haplotype block formed by the ADH1A and ADH1B loci. We detected two significant interactions between pairs of markers in intron 6 of ADH6 and intron 12 of ALDH2 (p = 5 × 10−5), and 5′ of both ADH4 and ADH1A (p = 2 × 10−4). Conclusion: We found evidence for the association of several ADH genes with AD in a sample of Western European origin. The significant interaction effects between markers in ADH and ALDH genes suggest possible epistatic roles between alcohol metabolic enzymes in the risk for AD. PMID:18331377

  3. Bridging cancer biology with the clinic: relative expression of a GRHL2-mediated gene-set pair predicts breast cancer metastasis.

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    Xinan Yang

    Full Text Available Identification and characterization of crucial gene target(s that will allow focused therapeutics development remains a challenge. We have interrogated the putative therapeutic targets associated with the transcription factor Grainy head-like 2 (GRHL2, a critical epithelial regulatory factor. We demonstrate the possibility to define the molecular functions of critical genes in terms of their personalized expression profiles, allowing appropriate functional conclusions to be derived. A novel methodology, relative expression analysis with gene-set pairs (RXA-GSP, is designed to explore the potential clinical utility of cancer-biology discovery. Observing that Grhl2-overexpression leads to increased metastatic potential in vitro, we established a model assuming Grhl2-induced or -inhibited genes confer poor or favorable prognosis respectively for cancer metastasis. Training on public gene expression profiles of 995 breast cancer patients, this method prioritized one gene-set pair (GRHL2, CDH2, FN1, CITED2, MKI67 versus CTNNB1 and CTNNA3 from all 2717 possible gene-set pairs (GSPs. The identified GSP significantly dichotomized 295 independent patients for metastasis-free survival (log-rank tested p = 0.002; severe empirical p = 0.035. It also showed evidence of clinical prognostication in another independent 388 patients collected from three studies (log-rank tested p = 3.3e-6. This GSP is independent of most traditional prognostic indicators, and is only significantly associated with the histological grade of breast cancer (p = 0.0017, a GRHL2-associated clinical character (p = 6.8e-6, Spearman correlation, suggesting that this GSP is reflective of GRHL2-mediated events. Furthermore, a literature review indicates the therapeutic potential of the identified genes. This research demonstrates a novel strategy to integrate both biological experiments and clinical gene expression profiles for extracting and elucidating the genomic

  4. Obesity induced by a pair-fed high fat sucrose diet: methylation and expression pattern of genes related to energy homeostasis

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    Campión Javier

    2010-06-01

    Full Text Available Abstract Background The expression of some genes controlling energy homeostasis could be regulated by epigenetic mechanisms that may play a role in body weight regulation. Thus, it is known that various nutritional factors affect DNA methylation. In order to assess whether the macronutrient composition of the diet could be related to the epigenetic regulation of gene expression and with obesity development, we investigated the effects on methylation and expression patterns of two pair-fed isocaloric diets in rats: control (rich in starch and HFS (rich in fat and sucrose. Results The pair-fed HFS diet induced higher weight gain and adiposity as compared to the controls as well as liver triglyceride accumulation and oxidative stress. Feeding the HFS diet impaired glucose tolerance and serum triglycerides and cholesterol. Liver glucokinase expression, a key glycolytic gene, remained unaltered, as well as the mRNA values of fatty acid synthase and NADH dehydrogenase (ubiquinone 1 beta subcomplex, 6 (NDUFB6 in liver and visceral adipocytes, which regulate lipogenesis and mitochondrial oxidative metabolism, respectively. Liver expression of hydroxyacyl-coenzyme A dehydrogenase (HADHB, a key gene of β-oxidation pathway, was higher in the HFS-fed animals. However, the methylation status of CpG islands in HADHB and glucokinase genes remained unchanged after feeding the HFS diet. Conclusions These results confirm that the distribution and type of macronutrients (starch vs. sucrose, and percent of fat influence obesity onset and the associated metabolic complications. HFS diets produce obesity independently of total energy intake, although apparently no epigenetic (DNA methylation changes accompanied the modifications observed in gene expression.

  5. Obesity induced by a pair-fed high fat sucrose diet: methylation and expression pattern of genes related to energy homeostasis

    Science.gov (United States)

    2010-01-01

    Background The expression of some genes controlling energy homeostasis could be regulated by epigenetic mechanisms that may play a role in body weight regulation. Thus, it is known that various nutritional factors affect DNA methylation. In order to assess whether the macronutrient composition of the diet could be related to the epigenetic regulation of gene expression and with obesity development, we investigated the effects on methylation and expression patterns of two pair-fed isocaloric diets in rats: control (rich in starch) and HFS (rich in fat and sucrose). Results The pair-fed HFS diet induced higher weight gain and adiposity as compared to the controls as well as liver triglyceride accumulation and oxidative stress. Feeding the HFS diet impaired glucose tolerance and serum triglycerides and cholesterol. Liver glucokinase expression, a key glycolytic gene, remained unaltered, as well as the mRNA values of fatty acid synthase and NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6 (NDUFB6) in liver and visceral adipocytes, which regulate lipogenesis and mitochondrial oxidative metabolism, respectively. Liver expression of hydroxyacyl-coenzyme A dehydrogenase (HADHB), a key gene of β-oxidation pathway, was higher in the HFS-fed animals. However, the methylation status of CpG islands in HADHB and glucokinase genes remained unchanged after feeding the HFS diet. Conclusions These results confirm that the distribution and type of macronutrients (starch vs. sucrose, and percent of fat) influence obesity onset and the associated metabolic complications. HFS diets produce obesity independently of total energy intake, although apparently no epigenetic (DNA methylation) changes accompanied the modifications observed in gene expression. PMID:20534152

  6. A pair of two-component regulatory genes ecrA1/A2 in S. coelicolor

    Institute of Scientific and Technical Information of China (English)

    李永泉; 岑沛霖; 陈时飞; 吴凡; 郑静

    2004-01-01

    Two-component genes are kinds of genetic elements involved in regulation of antibiotic production in Streptomyces coelicolor. DNA microarray analysis revealed that ecrA1/A2, which mapped at distant sites from red locus and encode respectively the kinase and regulator, expressed coordinately with genes of Red specific biosynthetic pathway, ecrA1 and ecrA2 gene-disruptive mutants were constructed using homogenotisation by reciprocal double crossover. Fermentation data showed that the undecylprodigiosin (Red) level of production was lower than that of wild-type strain. However, the change of the actinorhodin (Act) production level was not significant compared with wild type. Thus, these experiment results confirmed that the two-component system ecrA 1/A2 was positive regulatory element for red gene cluster.

  7. Typing of Neisseria gonorrhoeae Opa and NG-MAST Gene of 12 Pairs of Sexual Contact Gonorrhea Patients in China

    Institute of Scientific and Technical Information of China (English)

    Hongxiang CHEN; Jiawen LI; Zhihong WU; Rongyi CHEN; Li XU; Ying YU; Jun SHUAI; Juan LI; Ming TAN; Yating TU

    2008-01-01

    To identify the genomic species of Neisseria gonorrhoeae, evaluate the difference between two molecular epidemiological methods and examine the relationship between sex partners and genotypes of bacteria, 24 strains of Neisseria gonorrhoeae isolated from the outpatients with gonorrhea were identified by using the Opa genotyping and NG-MAST genotyping and the relationship between genotypes and phenotypes was studied. Twenty-four strains of Neisseria gonorrhoeae fell into 10 ST genotypes by NG-MAST genotyping, whereas these strains were classified into 12 OT Opa genotypes by Opa genotyping. A new epidemic strain of ST genotype (217-86% homologisation 178) in China was identified. It is concluded that genotypes of each pair of strains from a pair of patient/sex partner besides 45/46 are the same, indicating that contagious infection take place between patient and the sex partner. Opa genotyping was more effective than NG-MAST genotyping in identifying the genomic species of Neisseria gonorrhoeae. ST genotype could be further classified into different Opa-types.

  8. Computer-aided codon-pairs deoptimization of the major envelope GP5 gene attenuates porcine reproductive and respiratory syndrome virus.

    Science.gov (United States)

    Ni, Yan-Yan; Zhao, Zhao; Opriessnig, Tanja; Subramaniam, Sakthivel; Zhou, Lei; Cao, Dianjun; Cao, Qian; Yang, Hanchun; Meng, Xiang-Jin

    2014-02-01

    Synthetic attenuated virus engineering (SAVE) is an emerging technology that enables rapid attenuation of viruses. In this study, by using SAVE we demonstrated rapid attenuation of an arterivirus, porcine reproductive and respiratory syndrome virus (PRRSV). The major envelope GP5 gene of PRRSV was codon-pair deoptimized aided by a computer algorithm. The codon-pair deoptimized virus, designated as SAVE5 with a deoptimized GP5 gene, was successfully rescued in vitro. The SAVE5 virus replicated at a lower level in vitro with a significant decrease of GP5 protein expression compared to the wild-type PRRSV VR2385 virus. Pigs experimentally infected with the SAVE5 virus had significantly lower viremia level up to 14 days post-infection as well as significantly reduced gross and histological lung lesions when compared to wild-type PRRSV VR2385 virus-infected pigs, indicating the attenuation of the SAVE5 virus. This study proved the feasibility of rapidly attenuating PRRSV by SAVE.

  9. Germline cell death is inhibited by P-element insertions disrupting the dcp-1/pita nested gene pair in Drosophila.

    Science.gov (United States)

    Laundrie, Bonni; Peterson, Jeanne S; Baum, Jason S; Chang, Jeffrey C; Fileppo, Dana; Thompson, Sharona R; McCall, Kimberly

    2003-12-01

    Germline cell death in Drosophila oogenesis is controlled by distinct signals. The death of nurse cells in late oogenesis is developmentally regulated, whereas the death of egg chambers during mid-oogenesis is induced by environmental stress or developmental abnormalities. P-element insertions in the caspase gene dcp-1 disrupt both dcp-1 and the outlying gene, pita, leading to lethality and defective nurse cell death in late oogenesis. By isolating single mutations in the two genes, we have found that the loss of both genes contributes to this ovary phenotype. Mutants of pita, which encodes a C2H2 zinc-finger protein, are homozygous lethal and show dumpless egg chambers and premature nurse cell death in germline clones. Early nurse cell death is not observed in the dcp-1/pita double mutants, suggesting that dcp-1+ activity is required for the mid-oogenesis cell death seen in pita mutants. dcp-1 mutants are viable and nurse cell death in late oogenesis occurs normally. However, starvation-induced germline cell death during mid-oogenesis is blocked, leading to a reduction and inappropriate nuclear localization of the active caspase Drice. These findings suggest that the combinatorial loss of pita and dcp-1 leads to the increased survival of abnormal egg chambers in mutants bearing the P-element alleles and that dcp-1 is essential for cell death during mid-oogenesis.

  10. Constructing disease-specific gene networks using pair-wise relevance metric: Application to colon cancer identifies interleukin 8, desmin and enolase 1 as the central elements

    Directory of Open Access Journals (Sweden)

    Jiang Wei

    2008-08-01

    Full Text Available Abstract Background With the advance of large-scale omics technologies, it is now feasible to reversely engineer the underlying genetic networks that describe the complex interplays of molecular elements that lead to complex diseases. Current networking approaches are mainly focusing on building genetic networks at large without probing the interaction mechanisms specific to a physiological or disease condition. The aim of this study was thus to develop such a novel networking approach based on the relevance concept, which is ideal to reveal integrative effects of multiple genes in the underlying genetic circuit for complex diseases. Results The approach started with identification of multiple disease pathways, called a gene forest, in which the genes extracted from the decision forest constructed by supervised learning of the genome-wide transcriptional profiles for patients and normal samples. Based on the newly identified disease mechanisms, a novel pair-wise relevance metric, adjusted frequency value, was used to define the degree of genetic relationship between two molecular determinants. We applied the proposed method to analyze a publicly available microarray dataset for colon cancer. The results demonstrated that the colon cancer-specific gene network captured the most important genetic interactions in several cellular processes, such as proliferation, apoptosis, differentiation, mitogenesis and immunity, which are known to be pivotal for tumourigenesis. Further analysis of the topological architecture of the network identified three known hub cancer genes [interleukin 8 (IL8 (p ≈ 0, desmin (DES (p = 2.71 × 10-6 and enolase 1 (ENO1 (p = 4.19 × 10-5], while two novel hub genes [RNA binding motif protein 9 (RBM9 (p = 1.50 × 10-4 and ribosomal protein L30 (RPL30 (p = 1.50 × 10-4] may define new central elements in the gene network specific to colon cancer. Gene Ontology (GO based analysis of the colon cancer-specific gene network and

  11. Microphthalmia in Texel sheep is associated with a missense mutation in the paired-like homeodomain 3 (PITX3) gene.

    Science.gov (United States)

    Becker, Doreen; Tetens, Jens; Brunner, Adrian; Bürstel, Daniela; Ganter, Martin; Kijas, James; Drögemüller, Cord

    2010-01-13

    Microphthalmia in sheep is an autosomal recessive inherited congenital anomaly found within the Texel breed. It is characterized by extremely small or absent eyes and affected lambs are absolutely blind. For the first time, we use a genome-wide ovine SNP array for positional cloning of a Mendelian trait in sheep. Genotyping 23 cases and 23 controls using Illumina's OvineSNP50 BeadChip allowed us to localize the causative mutation for microphthalmia to a 2.4 Mb interval on sheep chromosome 22 by association and homozygosity mapping. The PITX3 gene is located within this interval and encodes a homeodomain-containing transcription factor involved in vertebrate lens formation. An abnormal development of the lens vesicle was shown to be the primary event in ovine microphthalmia. Therefore, we considered PITX3 a positional and functional candidate gene. An ovine BAC clone was sequenced, and after full-length cDNA cloning the PITX3 gene was annotated. Here we show that the ovine microphthalmia phenotype is perfectly associated with a missense mutation (c.338G>C, p.R113P) in the evolutionary conserved homeodomain of PITX3. Selection against this candidate causative mutation can now be used to eliminate microphthalmia from Texel sheep in production systems. Furthermore, the identification of a naturally occurring PITX3 mutation offers the opportunity to use the Texel as a genetically characterized large animal model for human microphthalmia.

  12. Microphthalmia in Texel sheep is associated with a missense mutation in the paired-like homeodomain 3 (PITX3 gene.

    Directory of Open Access Journals (Sweden)

    Doreen Becker

    Full Text Available Microphthalmia in sheep is an autosomal recessive inherited congenital anomaly found within the Texel breed. It is characterized by extremely small or absent eyes and affected lambs are absolutely blind. For the first time, we use a genome-wide ovine SNP array for positional cloning of a Mendelian trait in sheep. Genotyping 23 cases and 23 controls using Illumina's OvineSNP50 BeadChip allowed us to localize the causative mutation for microphthalmia to a 2.4 Mb interval on sheep chromosome 22 by association and homozygosity mapping. The PITX3 gene is located within this interval and encodes a homeodomain-containing transcription factor involved in vertebrate lens formation. An abnormal development of the lens vesicle was shown to be the primary event in ovine microphthalmia. Therefore, we considered PITX3 a positional and functional candidate gene. An ovine BAC clone was sequenced, and after full-length cDNA cloning the PITX3 gene was annotated. Here we show that the ovine microphthalmia phenotype is perfectly associated with a missense mutation (c.338G>C, p.R113P in the evolutionary conserved homeodomain of PITX3. Selection against this candidate causative mutation can now be used to eliminate microphthalmia from Texel sheep in production systems. Furthermore, the identification of a naturally occurring PITX3 mutation offers the opportunity to use the Texel as a genetically characterized large animal model for human microphthalmia.

  13. Atrophic dermatofibrosarcoma protuberans with the fusion gene COL1A1-PDGFB detected by RT-PCR using only a single primer pair.

    Science.gov (United States)

    Xu, Wen-Jun; Wang, Ju-Sheng

    2015-01-01

    Dermatofibrosarcoma protuberans (DFSPs) is an uncommon dermal tumor of intermediate to low-grade malignancy. A few patients have clinically persistent plaques that might be atrophic, and they are difficult to be diagnosed clinically. With the development of cytogenetic and molecular biology techniques, the detection of fusion transcripts of the collagen type 1a1 (COL1A1) and platelet-derived growth factor-BB (PDGFB) genes has been recognized as a reliable and valuable molecular tool for the diagnosis of DFSPs. We reported a 24-year-old woman who had a 2 years history of atrophic DFSPs, and detected the gene fusion between COL1A1 to PDGFB by one-step method of RT-PCR using only a single primer pair. The gene fusion detected by this rapid and efficient one-step method in our patient appears to be the first report of atrophic DFSPs, and we detected a novel COL1A1 breakpoint between exon 2 and exon 3.

  14. Light and auxin responsive cytochrome P450s from Withania somnifera Dunal: cloning, expression and molecular modelling of two pairs of homologue genes with differential regulation.

    Science.gov (United States)

    Srivastava, Sudhakar; Sangwan, Rajender Singh; Tripathi, Sandhya; Mishra, Bhawana; Narnoliya, L K; Misra, L N; Sangwan, Neelam S

    2015-11-01

    Cytochrome P450s (CYPs) catalyse a wide variety of oxygenation/hydroxylation reactions that facilitate diverse metabolic functions in plants. Specific CYP families are essential for the biosynthesis of species-specialized metabolites. Therefore, we investigated the role of different CYPs related to secondary metabolism in Withania somnifera, a medicinally important plant of the Indian subcontinent. In this study, complete complementary DNAs (cDNAs) of four different CYP genes were isolated and christened as WSCYP93Id, WSCYP93Sm, WSCYP734B and WSCYP734R. These cDNAs encoded polypeptides comprising of 498, 496, 522 and 550 amino acid residues with their deduced molecular mass of 56.7, 56.9, 59.4 and 62.2 kDa, respectively. Phylogenetic study and molecular modelling analysis of the four cloned WSCYPs revealed their categorization into two CYP families (CYP83B1 and CYP734A1) belonging to CYP71 and CYP72 clans, respectively. BLASTp searches showed similarity of 75 and 56 %, respectively, between the two CYP members of CYP83B1 and CYP734A1 with major variances exhibited in their N-terminal regions. The two pairs of homologues exhibited differential expression profiles in the leaf tissues of selected chemotypes of W. somnifera as well as in response to treatments such as methyl jasmonate, wounding, light and auxin. Light and auxin regulated two pairs of WSCYP homologues in a developing seedling in an interesting differential manner. Their lesser resemblance and homology with other CYP sequences suggested these genes to be more specialized and distinct ones. The results on chemotype-specific expression patterns of the four genes strongly suggested their key/specialized involvement of the CYPs in the biosynthesis of chemotype-specific metabolites, though their further biochemical characterization would reveal the specificity in more detail. It is revealed that WSCYP93Id and WSCYP93Sm may be broadly involved in the oxygenation reactions in the plant and, thereby, control

  15. Association Between Interleukin 4 Gene Seventy-Base-Pair Variable Number of Tandem Repeats Polymorphism and Uterine Leiomyoma

    Directory of Open Access Journals (Sweden)

    Salimi

    2014-06-01

    Full Text Available Background Uterine Leiomyoma (UL is the most common gynecological tumor and a public health problem. Higher serum interleukin 4 (IL-4 level, as an anti-inflammatory cytokine that regulates TH1/TH2 cells balance, has been observed in the uterine cavity. Objectives The aim of this study was to investigate the association between IL4 gene variable number of tandem repeats (VNTR polymorphism and the risk of UL in southeast of Iran. Patients and Methods We compared of 99 patients with UL with that of 102 healthy controls. The IL4 VNTR polymorphism was genotyped by gel electrophoresis after PCR amplification. Results There was no significant association between RP*1/RP*2 and RP*2/RP*2 genotypes and UL; however, a significant association between RP*2/RP*2 genotype and UL was found after adjustment for age (OR, 4; 95% CI, 1.3-12.4; and P = 0.015. The frequency of RP*2 allele was significantly higher in women with UL (OR, 1.9; 95% CI, 1.1-3.5; and P = 0.03. Conclusions The IL4 VNTR RP*2/RP*2 genotype could be an age-related risk factor for UL. Moreover, the frequency of RP*2 allele was significantly higher in women with UL.

  16. Analysis of 0.5-kilobase-pair repeats in the Mycoplasma hominis lmp gene system and identification of gene products

    DEFF Research Database (Denmark)

    Ladefoged, Søren; Jensen, Lise Torp; Brock, B;

    1996-01-01

    Mycoplasma hominis, an opportunistic pathogenic bacterium of humans, has a small genome of 700 kb. Despite this, multiple copies of gene sequences with similarities to the structural gene (lmp1) of a 135-kDa surface-located membrane protein (Lmp1) have been identified on the genome of M. hominis PG...... repeats with 51 to 90% similarity to 10 similar repeats found in the lmp1-lmp2 region. The 0.5-kb DNA repeats thus comprised about 1% of the entire genome. In both regions, a base change in one of the repeats gave rise to a stop codon, and thereby lmp2 and lmp4 occurred. By PCR amplification of reverse...

  17. Rapid genotyping assays for the 4-base pair deletion of canine MDR1/ABCB1 gene and low frequency of the mutant allele in Border Collie dogs.

    Science.gov (United States)

    Mizukami, Keijiro; Chang, Hye-Sook; Yabuki, Akira; Kawamichi, Takuji; Hossain, Mohammad A; Rahman, Mohammad M; Uddin, Mohammad M; Yamato, Osamu

    2012-01-01

    P-glycoprotein, encoded by the MDR1 or ABCB1 gene, is an integral component of the blood-brain barrier as an efflux pump for xenobiotics crucial in limiting drug uptake into the central nervous system. Dogs homozygous for a 4-base pair deletion of the canine MDR1 gene show altered expression or function of P-glycoprotein, resulting in neurotoxicosis after administration of the substrate drugs. In the present study, the usefulness of microchip electrophoresis for genotyping assays detecting this deletion mutation was evaluated. Mutagenically separated polymerase chain reaction (MS-PCR) and real-time PCR assays were newly developed and evaluated. Furthermore, a genotyping survey was carried out in a population of Border Collies dogs in Japan to determine the allele frequency in this breed. Microchip electrophoresis showed advantages in detection sensitivity and time saving over other modes of electrophoresis. The MS-PCR assay clearly discriminated all genotypes. Real-time PCR assay was most suitable for a large-scale survey due to its high throughput and rapidity. The genotyping survey demonstrated that the carrier and mutant allele frequencies were 0.49% and 0.25%, respectively, suggesting that the mutant allele frequency in Border Collies is markedly low compared to that in the susceptible dog breeds such as rough and smooth Collies. PMID:22362942

  18. The Wnt and Delta-Notch signalling pathways interact to direct pair-rule gene expression via caudal during segment addition in the spider Parasteatoda tepidariorum.

    Science.gov (United States)

    Schönauer, Anna; Paese, Christian L B; Hilbrant, Maarten; Leite, Daniel J; Schwager, Evelyn E; Feitosa, Natália Martins; Eibner, Cornelius; Damen, Wim G M; McGregor, Alistair P

    2016-07-01

    In short-germ arthropods, posterior segments are added sequentially from a segment addition zone (SAZ) during embryogenesis. Studies in spiders such as Parasteatoda tepidariorum have provided insights into the gene regulatory network (GRN) underlying segment addition, and revealed that Wnt8 is required for dynamic Delta (Dl) expression associated with the formation of new segments. However, it remains unclear how these pathways interact during SAZ formation and segment addition. Here, we show that Delta-Notch signalling is required for Wnt8 expression in posterior SAZ cells, but represses the expression of this Wnt gene in anterior SAZ cells. We also found that these two signalling pathways are required for the expression of the spider orthologues of even-skipped (eve) and runt-1 (run-1), at least in part via caudal (cad). Moreover, it appears that dynamic expression of eve in this spider does not require a feedback loop with run-1, as is found in the pair-rule circuit of the beetle Tribolium Taken together, our results suggest that the development of posterior segments in Parasteatoda is directed by dynamic interactions between Wnt8 and Delta-Notch signalling that are read out by cad, which is necessary but probably not sufficient to regulate the expression of eve and run-1 Our study therefore provides new insights towards better understanding the evolution and developmental regulation of segmentation in other arthropods, including insects.

  19. The Wnt and Delta-Notch signalling pathways interact to direct pair-rule gene expression via caudal during segment addition in the spider Parasteatoda tepidariorum.

    Science.gov (United States)

    Schönauer, Anna; Paese, Christian L B; Hilbrant, Maarten; Leite, Daniel J; Schwager, Evelyn E; Feitosa, Natália Martins; Eibner, Cornelius; Damen, Wim G M; McGregor, Alistair P

    2016-07-01

    In short-germ arthropods, posterior segments are added sequentially from a segment addition zone (SAZ) during embryogenesis. Studies in spiders such as Parasteatoda tepidariorum have provided insights into the gene regulatory network (GRN) underlying segment addition, and revealed that Wnt8 is required for dynamic Delta (Dl) expression associated with the formation of new segments. However, it remains unclear how these pathways interact during SAZ formation and segment addition. Here, we show that Delta-Notch signalling is required for Wnt8 expression in posterior SAZ cells, but represses the expression of this Wnt gene in anterior SAZ cells. We also found that these two signalling pathways are required for the expression of the spider orthologues of even-skipped (eve) and runt-1 (run-1), at least in part via caudal (cad). Moreover, it appears that dynamic expression of eve in this spider does not require a feedback loop with run-1, as is found in the pair-rule circuit of the beetle Tribolium Taken together, our results suggest that the development of posterior segments in Parasteatoda is directed by dynamic interactions between Wnt8 and Delta-Notch signalling that are read out by cad, which is necessary but probably not sufficient to regulate the expression of eve and run-1 Our study therefore provides new insights towards better understanding the evolution and developmental regulation of segmentation in other arthropods, including insects. PMID:27287802

  20. Genetic Analysis Using an Isogenic Mating Pair of Aspergillus fumigatus Identifies Azole Resistance Genes and Lack of MAT Locus's Role in Virulence.

    Science.gov (United States)

    Losada, Liliana; Sugui, Janyce A; Eckhaus, Michael A; Chang, Yun C; Mounaud, Stephanie; Figat, Abigail; Joardar, Vinita; Pakala, Suman B; Pakala, Suchitra; Venepally, Pratap; Fedorova, Natalie; Nierman, William C; Kwon-Chung, Kyung J

    2015-04-01

    Invasive aspergillosis (IA) due to Aspergillus fumigatus is a major cause of mortality in immunocompromised patients. The discovery of highly fertile strains of A. fumigatus opened the possibility to merge classical and contemporary genetics to address key questions about this pathogen. The merger involves sexual recombination, selection of desired traits, and genomics to identify any associated loci. We constructed a highly fertile isogenic pair of A. fumigatus strains with opposite mating types and used them to investigate whether mating type is associated with virulence and to find the genetic loci involved in azole resistance. The pair was made isogenic by 9 successive backcross cycles of the foundational strain AFB62 (MAT1-1) with a highly fertile (MAT1-2) progeny. Genome sequencing showed that the F9 MAT1-2 progeny was essentially identical to the AFB62. The survival curves of animals infected with either strain in three different animal models showed no significant difference, suggesting that virulence in A. fumigatus was not associated with mating type. We then employed a relatively inexpensive, yet highly powerful strategy to identify genomic loci associated with azole resistance. We used traditional in vitro drug selection accompanied by classical sexual crosses of azole-sensitive with resistant isogenic strains. The offspring were plated under varying drug concentrations and pools of resulting colonies were analyzed by whole genome sequencing. We found that variants in 5 genes contributed to azole resistance, including mutations in erg11A (cyp51A), as well as multi-drug transporters, erg25, and in HMG-CoA reductase. The results demonstrated that with minimal investment into the sequencing of three pools from a cross of interest, the variation(s) that contribute any phenotype can be identified with nucleotide resolution. This approach can be applied to multiple areas of interest in A. fumigatus or other heterothallic pathogens, especially for virulence

  1. Conserved regulation of p53 network dosage by microRNA-125b occurs through evolving miRNA-target gene pairs.

    Directory of Open Access Journals (Sweden)

    Minh T N Le

    2011-09-01

    Full Text Available MicroRNAs regulate networks of genes to orchestrate cellular functions. MiR-125b, the vertebrate homologue of the Caenorhabditis elegans microRNA lin-4, has been implicated in the regulation of neural and hematopoietic stem cell homeostasis, analogous to how lin-4 regulates stem cells in C. elegans. Depending on the cell context, miR-125b has been proposed to regulate both apoptosis and proliferation. Because the p53 network is a central regulator of both apoptosis and proliferation, the dual roles of miR-125b raise the question of what genes in the p53 network might be regulated by miR-125b. By using a gain- and loss-of-function screen for miR-125b targets in humans, mice, and zebrafish and by validating these targets with the luciferase assay and a novel miRNA pull-down assay, we demonstrate that miR-125b directly represses 20 novel targets in the p53 network. These targets include both apoptosis regulators like Bak1, Igfbp3, Itch, Puma, Prkra, Tp53inp1, Tp53, Zac1, and also cell-cycle regulators like cyclin C, Cdc25c, Cdkn2c, Edn1, Ppp1ca, Sel1l, in the p53 network. We found that, although each miRNA-target pair was seldom conserved, miR-125b regulation of the p53 pathway is conserved at the network level. Our results lead us to propose that miR-125b buffers and fine-tunes p53 network activity by regulating the dose of both proliferative and apoptotic regulators, with implications for tissue stem cell homeostasis and oncogenesis.

  2. Affected-sib-pair mapping of a novel susceptibility gene to insulin-dependent diabetes mellitus (IDDM8) on chromosome 6q25-q27

    Energy Technology Data Exchange (ETDEWEB)

    Luo, D.F.; Bui, M.M.; Muir, A. [Univ. of Florida, Gainesville, FL (United States)] [and others

    1995-10-01

    Affected-sib-pair analyses were performed using 104 Caucasian families to map genes that predispose to insulin-dependent diabetes mellitus (IDDM). We have obtained linkage evidence for D6S446 (maximum lod score [MLS] = 2.8) and for D6S264 (MLS = 2.0) on 6q25q27. Together with a previously reported data set, linkage can be firmly established (MLS = 3.4 for D6S264), and the disease locus has been designated IDDM8. With analysis of independent families, we confirmed linkage evidence for the previously identified IDDM3 (15q) and DDM7 (2q). We also typed additional markers in the regions containing IDDM3, IDDM4, IDDM5, and IDDM8. Preliminary linkage evidence for a novel region on chromosome 4q (D4S1566) has been found in 47 Florida families (P < .03). We also found evidence of linkage for two regions previously identified as potential linkages in the Florida subset: D3S1303 on 3q (P < .04) and D7S486 on 7q (P < .03). We could not confirm linkage with eight other regions (D1S191, D1S412, D4S1604, D8S264, D8S556, D1OS193, D13S158, and D18S64) previously identified as potential linkages. 26 refs., 1 fig., 4 tabs.

  3. [A Pair of Siblings with Frontotemporal Dementia and Amyotrophic Lateral Sclerosis and a Novel Thr462Lysfs Mutation in the TBK1 Gene].

    Science.gov (United States)

    Schönecker, S; Brendel, M; van der Zee, J; van Broeckhoven, C; Rominger, A; Danek, A; Levin, J

    2016-08-01

    We report on a pair of siblings with frontotemporal dementia (FTD) and amyotrophic lateral sclerosis (ALS) and a novel Thr462Lysfs mutation in the TANK-binding kinase 1 (TBK1) gene identified through the European Early-Onset Dementia Consortium. The patients presented at the age of 77 and 75 years and displayed dementia and bulbar symptoms as well as progressive paresis. After a progressive course, both of them died only a few months after diagnosis. Most recently, TBK1 mutations were identified in patients with FTD and ALS. A loss of expression of the mutant allele, leading to 50 % reduced TBK1 protein levels, seems to be causative. The occurrence of TBK1 mutations in FTD and ALS underlines the fact that FTD and ALS are part of the same disease spectrum. For future therapeutic trials, characterization of TBK1 mutation carriers in presymptomatic cohorts, such as the genetic frontotemporal dementia initiative (GENFI), is of great importance. PMID:27570907

  4. Pairing Learners in Pair Work Activity

    Science.gov (United States)

    Storch, Neomy; Aldosari, Ali

    2013-01-01

    Although pair work is advocated by major theories of second language (L2) learning and research findings suggest that pair work facilitates L2 learning, what is unclear is how to best pair students in L2 classes of mixed L2 proficiency. This study investigated the nature of pair work in an English as a Foreign Language (EFL) class in a college in…

  5. Mutations in the paired domain of the human PAX3 gene cause Klein-Waardenburg syndrome (WS-III) as well as Waardenburg syndrome type I (WS-I)

    Energy Technology Data Exchange (ETDEWEB)

    Hoth, C.F.; Milunsky, A.; Lipsky, N.; Baldwin, C.T. (Boston Univ. School of Medicine, MA (United States)); Sheffer, R. (Hadassah-Hebrew Univ. Medical Center, Jerusalem (Israel)); Clarren, S.K. (Univ. of Washington School of Medicine, Seattle (United States))

    1993-03-01

    Waardenburg syndrome type I (WS-I) is an autosomal dominant disorder characterized by sensorineural hearing loss, dystopia canthorum, pigmentary disturbances, and other developmental defects. Klein-Waardenburg syndrome (WS-III) is a disorder with many of the same characteristics as WS-I and includes musculoskeletal abnormalities. The authors have recently reported the identification and characterization of one of the first gene defects, in the human PAX3 gene, which causes WS-I. PAX3 is a DNA-binding protein that contains a structural motif known as the paired domain and is believed to regulate the expression of other genes. In this report they describe two new mutations, in the human PAX3 gene, that are associated with WS. One mutation was found in a family with WS-I, while the other mutation was found in a family with WS-III. Both mutations were in the highly conserved paired domain of the human PAX3 gene and are similar to other mutations that cause WS. The results indicate that mutations in the PAX3 gene can cause both WS-I and WS-III. 36 refs., 4 figs.

  6. Expression of the pair-rule gene homologs runt, Pax3/7, even-skipped-1 and even-skipped-2 during larval and juvenile development of the polychaete annelid Capitella teleta does not support a role in segmentation

    Directory of Open Access Journals (Sweden)

    Seaver Elaine C

    2012-04-01

    Full Text Available Abstract Background Annelids and arthropods each possess a segmented body. Whether this similarity represents an evolutionary convergence or inheritance from a common segmented ancestor is the subject of ongoing investigation. Methods To investigate whether annelids and arthropods share molecular components that control segmentation, we isolated orthologs of the Drosophila melanogaster pair-rule genes, runt, paired (Pax3/7 and eve, from the polychaete annelid Capitella teleta and used whole mount in situ hybridization to characterize their expression patterns. Results When segments first appear, expression of the single C. teleta runt ortholog is only detected in the brain. Later, Ct-runt is expressed in the ventral nerve cord, foregut and hindgut. Analysis of Pax genes in the C. teleta genome reveals the presence of a single Pax3/7 ortholog. Ct-Pax3/7 is initially detected in the mid-body prior to segmentation, but is restricted to two longitudinal bands in the ventral ectoderm. Each of the two C. teleta eve orthologs has a unique and complex expression pattern, although there is partial overlap in several tissues. Prior to and during segment formation, Ct-eve1 and Ct-eve2 are both expressed in the bilaterial pair of mesoteloblasts, while Ct-eve1 is expressed in the descendant mesodermal band cells. At later stages, Ct-eve2 is expressed in the central and peripheral nervous system, and in mesoderm along the dorsal midline. In late stage larvae and adults, Ct-eve1 and Ct-eve2 are expressed in the posterior growth zone. Conclusions C. teleta eve, Pax3/7 and runt homologs all have distinct expression patterns and share expression domains with homologs from other bilaterians. None of the pair-rule orthologs examined in C. teleta exhibit segmental or pair-rule stripes of expression in the ectoderm or mesoderm, consistent with an independent origin of segmentation between annelids and arthropods.

  7. Powered Tate Pairing Computation

    Science.gov (United States)

    Kang, Bo Gyeong; Park, Je Hong

    In this letter, we provide a simple proof of bilinearity for the eta pairing. Based on it, we show an efficient method to compute the powered Tate pairing as well. Although efficiency of our method is equivalent to that of the Tate pairing on the eta pairing approach, but ours is more general in principle.

  8. Sequences more than 500 base pairs upstream of the human U3 small nuclear RNA gene stimulate the synthesis of U3 RNA in frog oocytes

    International Nuclear Information System (INIS)

    Small nuclear RNA (snRNA) genes contain strong promoters capable of initiating transcription once every 4 s. Studies on the human U1 snRNA gene, carried out in other laboratories, showed that sequences within 400 bp of the 5' flanking region are sufficient for maximal levels of transcription both in vivo and in frog oocytes [reviewed in Dahlberg and Lund (1988)]. The authors studied the expression of a human U3 snRNA gene by injecting 5' deletion mutants into frog oocytes. The results show that sequences more than 500 bp upstream of the U3 snRNA gene have a 2-3-fold stimulatory effect on the U3 snRNA synthesis. These results indicate that the human U3 snRNA gene is different from human U1 snRNA gene in containing regulatory elements more than 500 bp upstream. The U3 snRNA gene upstream sequences contain an AluI homologous sequence in the -1,200 region; these AluI sequences were transcribed in vitro and in frog oocytes but were not detectable in Hela cells

  9. A gene pair from the human major histocompatibility complex encodes large proline-rich proteins with multiple repeated motifs and a single ubiquitin-like domain.

    OpenAIRE

    Banerji, J.; Sands, J; Strominger, J.L.; Spies, T

    1990-01-01

    A large number of genes has been identified previously between the class I and class II gene families within the class III region of the human major histocompatibility complex. The complete sequences of two of these genes, BAT2 and BAT3 (where BAT is HLA-B-associated transcript), which are closely linked, were determined from cDNA clones. The putative BAT2 and BAT3 proteins are 228 and 110 kDa, respectively, and do not appear to be members of any known family of proteins. However, BAT3 contai...

  10. Pairing dynamics and the origin of species

    OpenAIRE

    Puebla, Oscar; Bermingham, Eldredge; Guichard, Frédéric

    2011-01-01

    Whether sexual selection alone can drive the evolution of assortative mating in the presence of gene flow is a long-standing question in evolutionary biology. Here, we report a role for pairing dynamics of individuals when mate choice is mutual, which is sufficient for the evolution of assortative mating by sexual selection alone in the presence of gene flow. Through behavioural observation, individual-based simulation and population genetic analysis, we evaluate the pairing dynamics of coral...

  11. Ancestral Y-linked genes were maintained by translocation to the X and Y chromosomes fused to an autosomal pair in the Okinawa spiny rat Tokudaia muenninki.

    Science.gov (United States)

    Murata, Chie; Kuroki, Yoko; Imoto, Issei; Kuroiwa, Asato

    2016-09-01

    Two species of the genus Tokudaia lack the Y chromosome and SRY, but several Y-linked genes have been rescued by translocation or transposition to other chromosomes. Tokudaia muenninki is the only species in the genus that maintains the Y owing to sex chromosome-autosome fusions. According to previous studies, many SRY pseudocopies and other Y-linked genes have evolved by excess duplication in this species. Using RNA-seq and RT-PCR, we found that ZFY, EIF2S3Y, TSPY, UTY, DDX3Y, USP9Y, and RBMY, but not UBA1Y, had high deduced amino acid sequence similarity and similar expression patterns with other rodents, suggesting that these genes were functional. Based on FISH and quantitative real-time PCR, all of the genes except for UTY and DDX3Y were amplified on the X and Y chromosomes with approximately 10-66 copies in the male genome. In a comparative analysis of the 372.4-kb BAC sequence and Y-linked gene transcripts from T. muenninki with the mouse Y genomic sequence, we observed that multiple-copy genes in the ancestral Y genome were nonfunctional, indicating that the gene functions were assumed by amplified copies. We also found a LTR sequence at the distal end of a SRY duplication unit, suggesting that unequal sister chromatid exchange mediated by retrotransposable elements could have been involved in SRY amplification. Our results revealed that the Y-linked genes were rescued from degeneration via translocations to other sex chromosomal regions and amplification events in T. muenninki.

  12. Spontaneous Pair Creation Revisited

    CERN Document Server

    Pickl, P

    2006-01-01

    Recently the so called Spontaneous Pair Creation of electron positron pairs in a strong external field has been rigorously established. We give here the heuristic core of the proof, since the results differ from those given in earlier works.

  13. Identification of a common reference gene pair for qPCR in human mesenchymal stromal cells from different tissue sources treated with VEGF

    DEFF Research Database (Denmark)

    Tratwal, Josefine; Follin, Bjarke; Ekblond, Annette;

    2014-01-01

    on reference genes (RGs) for the normalization of qPCR data. RESULTS: BMSCs and ASCs were stimulated with vascular endothelial growth factor A-165 (VEGF) for one week, and compared with un-stimulated cells from the same donor. The stability of nine RGs through VEGF treatment as well as the donor variation...

  14. Over half of breakpoints in gene pairs involved in cancer-specific recurrent translocations are mapped to human chromosomal fragile sites

    OpenAIRE

    Pierce Levi CT; Williams Laura E; Burrow Allison A; Wang Yuh-Hwa

    2009-01-01

    Abstract Background Gene rearrangements such as chromosomal translocations have been shown to contribute to cancer development. Human chromosomal fragile sites are regions of the genome especially prone to breakage, and have been implicated in various chromosome abnormalities found in cancer. However, there has been no comprehensive and quantitative examination of the location of fragile sites in relation to all chromosomal aberrations. Results Using up-to-date databases containing all cancer...

  15. Frequencies of 32 base pair deletion of the (Delta 32) allele of the CCR5 HIV-1 co-receptor gene in Caucasians: a comparative analysis.

    Science.gov (United States)

    Lucotte, Gérard

    2002-05-01

    The CCR5 gene encodes for the co-receptor for the major macrophage-tropics strains of human immunodeficiency virus (HIV-1), and a mutant allele of this gene (Delta 32) provide to homozygotes a strong resistance against infection by HIV. The frequency of the Delta 32 allele was investigated in 40 populations of 8842 non-infected subjects coming from Europe, the Middle-East and North Africa. A clear north-south decreasing gradient was evident for Delta 32 frequencies, with a significant correlation coefficient (r=0.83). The main frequency value of Delta 32 for Sweden, Norway, Denmark, Finland and Iceland (0.134) is significantly (chi(2)=63.818, PVikings might have been instrumental in disseminating the Delta 32 allele during the eighth to the tenth centuries during historical times. Possibly variola virus has discriminated the Delta 32 carriers in Europe since the eighth century AD, explaining the high frequency of the Delta 32 allele in Europe today.

  16. Secure pairing with biometrics

    NARCIS (Netherlands)

    Buhan, I.R.; Boom, B.J.; Doumen, J.M.; Hartel, P.H.; Veldhuis, R.N.J.

    2009-01-01

    Secure pairing enables two devices that share no prior context with each other to agree upon a security association, which they can use to protect their subsequent communication. Secure pairing offers guarantees of the association partner identity and it should be resistant to eavesdropping and to a

  17. Supernovae in paired galaxies

    CERN Document Server

    Nazaryan, T A; Hakobyan, A A; Adibekyan, V Zh; Kunth, D; Mamon, G A; Turatto, M; Aramyan, L S

    2013-01-01

    We investigate the influence of close neighbor galaxies on the properties of supernovae (SNe) and their host galaxies using 56 SNe located in pairs of galaxies with different levels of star formation (SF) and nuclear activity. The mean distance of type II SNe from nuclei of hosts is greater by about a factor of 2 than that of type Ibc SNe. For the first time it is shown that SNe Ibc are located in pairs with significantly smaller difference of radial velocities between components than pairs containing SNe Ia and II. We consider this as a result of higher star formation rate (SFR) of these closer systems of galaxies. SN types are not correlated with the luminosity ratio of host and neighbor galaxies in pairs. The orientation of SNe with respect to the preferred direction toward neighbor galaxy is found to be isotropic and independent of kinematical properties of the galaxy pair.

  18. Electron pairing without superconductivity

    Science.gov (United States)

    Levy, Jeremy

    Strontium titanate (SrTiO3) is the first and best known superconducting semiconductor. It exhibits an extremely low carrier density threshold for superconductivity, and possesses a phase diagram similar to that of high-temperature superconductors--two factors that suggest an unconventional pairing mechanism. Despite sustained interest for 50 years, direct experimental insight into the nature of electron pairing in SrTiO3 has remained elusive. Here we perform transport experiments with nanowire-based single-electron transistors at the interface between SrTiO3 and a thin layer of lanthanum aluminate, LaAlO3. Electrostatic gating reveals a series of two-electron conductance resonances--paired electron states--that bifurcate above a critical pairing field Bp of about 1-4 tesla, an order of magnitude larger than the superconducting critical magnetic field. For magnetic fields below Bp, these resonances are insensitive to the applied magnetic field; for fields in excess of Bp, the resonances exhibit a linear Zeeman-like energy splitting. Electron pairing is stable at temperatures as high as 900 millikelvin, well above the superconducting transition temperature (about 300 millikelvin). These experiments demonstrate the existence of a robust electronic phase in which electrons pair without forming a superconducting state. Key experimental signatures are captured by a model involving an attractive Hubbard interaction that describes real-space electron pairing as a precursor to superconductivity. Support from AFOSR, ONR, ARO, NSF, DOE and NSSEFF is gratefully acknowledged.

  19. Subradiant split Cooper pairs

    OpenAIRE

    Cottet, Audrey; Kontos, Takis; Yeyati, Alfredo Levy

    2011-01-01

    We suggest a way to characterize the coherence of the split Cooper pairs emitted by a double-quantum-dot based Cooper pair splitter (CPS), by studying the radiative response of such a CPS inside a microwave cavity. The coherence of the split pairs manifests in a strongly nonmonotonic variation of the emitted radiation as a function of the parameters controlling the coupling of the CPS to the cavity. The idea to probe the coherence of the electronic states using the tools of Cavity Quantum Ele...

  20. Au pair trajectories

    DEFF Research Database (Denmark)

    Dalgas, Karina Märcher

    2015-01-01

    Since 2000, thousands of young Filipino migrants have come to Denmark as au pairs. Officially, they are there to “broaden their cultural horizons” by living temporarily with a Danish host family, but they also conduct domestic labor in exchange for food and money, which allows them to send...... ethnographic component of the dissertation consists of four articles, all emphasizing the au pairs’ agency by viewing their migration as a dynamic personal and social experience. Arguing that Filipina au pairs tend to be understood primarily from the perspective of their precarious situation as domestic...... of their Danish host families. Based on their migratory status as au pairs, these young migrants must therefore negotiate the different moral and contractual rights and obligations that characterize the local and transnational family ties in which they are engaged. This study of Filipina au pair migration through...

  1. Supernovae in paired galaxies

    CERN Document Server

    Nazaryan, T A; Hakobyan, A A; Adibekyan, V Zh; Kunth, D; Mamon, G A; Turatto, M; Aramyan, L S

    2013-01-01

    We investigate the influence of close neighbor galaxies on the properties of supernovae (SNe) and their host galaxies using 56 SNe located in pairs of galaxies with different levels of star formation (SF) and nuclear activity. The mean distance of type II SNe from nuclei of hosts is greater by about a factor of 2 than that of type Ibc SNe. The distributions and mean distances of SNe are consistent with previous results compiled with the larger sample. For the first time it is shown that SNe Ibc are located in pairs with significantly smaller difference of radial velocities between components than pairs containing SNe Ia and II. We consider this as a result of higher star formation rate (SFR) of these closer systems of galaxies.

  2. Searching for synergies: matrix algebraic approaches for efficient pair screening.

    Directory of Open Access Journals (Sweden)

    Philip Gerlee

    Full Text Available Functionally interacting perturbations, such as synergistic drugs pairs or synthetic lethal gene pairs, are of key interest in both pharmacology and functional genomics. However, to find such pairs by traditional screening methods is both time consuming and costly. We present a novel computational-experimental framework for efficient identification of synergistic target pairs, applicable for screening of systems with sizes on the order of current drug, small RNA or SGA (Synthetic Genetic Array libraries (>1000 targets. This framework exploits the fact that the response of a drug pair in a given system, or a pair of genes' propensity to interact functionally, can be partly predicted by computational means from (i a small set of experimentally determined target pairs, and (ii pre-existing data (e.g. gene ontology, PPI on the similarities between targets. Predictions are obtained by a novel matrix algebraic technique, based on cyclical projections onto convex sets. We demonstrate the efficiency of the proposed method using drug-drug interaction data from seven cancer cell lines and gene-gene interaction data from yeast SGA screens. Our protocol increases the rate of synergism discovery significantly over traditional screening, by up to 7-fold. Our method is easy to implement and could be applied to accelerate pair screening for both animal and microbial systems.

  3. Paired fuzzy sets

    DEFF Research Database (Denmark)

    Rodríguez, J. Tinguaro; Franco de los Ríos, Camilo; Gómez, Daniel;

    2015-01-01

    In this paper we want to stress the relevance of paired fuzzy sets, as already proposed in previous works of the authors, as a family of fuzzy sets that offers a unifying view for different models based upon the opposition of two fuzzy sets, simply allowing the existence of different types...

  4. Hadronic lepton pair production

    International Nuclear Information System (INIS)

    The author describes a beam dump experiment at the CERN SPS for the study of μ pair production by π+-, K+-, and p(anti p) beams on a copper target at 39.5 GeV/c. The dependence of the cross sections from various parameters is discussed. (HSI)

  5. Multi-pair states in electron-positron pair creation

    Science.gov (United States)

    Wöllert, Anton; Bauke, Heiko; Keitel, Christoph H.

    2016-09-01

    Ultra strong electromagnetic fields can lead to spontaneous creation of single or multiple electron-positron pairs. A quantum field theoretical treatment of the pair creation process combined with numerical methods provides a description of the fermionic quantum field state, from which all observables of the multiple electron-positron pairs can be inferred. This allows to study the complex multi-particle dynamics of electron-positron pair creation in-depth, including multi-pair statistics as well as momentum distributions and spin. To illustrate the potential benefit of this approach, it is applied to the intermediate regime of pair creation between nonperturbative Schwinger pair creation and perturbative multiphoton pair creation where the creation of multi-pair states becomes nonnegligible but cascades do not yet set in. Furthermore, it is demonstrated how spin and helicity of the created electrons and positrons are affected by the polarization of the counterpropagating laser fields, which induce the creation of electron-positron pairs.

  6. PANDAseq: paired-end assembler for illumina sequences

    OpenAIRE

    Masella Andre P; Bartram Andrea K; Truszkowski Jakub M; Brown Daniel G; Neufeld Josh D

    2012-01-01

    Abstract Background Illumina paired-end reads are used to analyse microbial communities by targeting amplicons of the 16S rRNA gene. Publicly available tools are needed to assemble overlapping paired-end reads while correcting mismatches and uncalled bases; many errors could be corrected to obtain higher sequence yields using quality information. Results PANDAseq assembles paired-end reads rapidly and with the correction of most errors. Uncertain error corrections come from reads with many lo...

  7. The novel regulatory ncRNA, NfiS, optimizes nitrogen fixation via base pairing with the nitrogenase gene nifK mRNA in Pseudomonas stutzeri A1501

    Science.gov (United States)

    Zhan, Yuhua; Yan, Yongliang; Deng, Zhiping; Chen, Ming; Lu, Wei; Lu, Chao; Shang, Liguo; Yang, Zhimin; Zhang, Wei; Wang, Wei; Li, Yun; Ke, Qi; Lu, Jiasi; Xu, Yuquan; Zhang, Liwen; Xie, Zhihong; Cheng, Qi; Elmerich, Claudine; Lin, Min

    2016-01-01

    Unlike most Pseudomonas, the root-associated bacterium Pseudomonas stutzeri A1501 fixes nitrogen after the horizontal acquisition of a nitrogen-fixing (nif) island. A genome-wide search for small noncoding RNAs (ncRNAs) in P. stutzeri A1501 identified the novel P. stutzeri-specific ncRNA NfiS in the core genome, whose synthesis was significantly induced under nitrogen fixation or sorbitol stress conditions. The expression of NfiS was RNA chaperone Hfq-dependent and activated by the sigma factor RpoN/global nitrogen activator NtrC/nif-specific activator NifA regulatory cascade. The nfiS-deficient mutant displayed reduced nitrogenase activity, as well as increased sensitivity to multiple stresses, such as osmotic and oxidative stresses. Secondary structure prediction and complementation studies confirmed that a stem-loop structure was essential for NfiS to regulate the nitrogenase gene nifK mRNA synthesis and thus nitrogenase activity. Microscale thermophoresis and physiological analysis showed that NfiS directly pairs with nifK mRNA and ultimately enhances nitrogenase activity by increasing the translation efficiency and the half-life of nifK mRNA. Our data also suggest structural and functional divergence of NfiS evolution in diazotrophic and nondiazotrophic backgrounds. It is proposed that NfiS was recruited by nifK mRNA as a novel regulator to integrate the horizontally acquired nif island into host global networks. PMID:27407147

  8. Gene

    Data.gov (United States)

    U.S. Department of Health & Human Services — Gene integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes,...

  9. Diffractive charged meson pair production

    CERN Document Server

    Lehmann-Dronke, B; Schäfer, S; Stein, E; Schäfer, A

    1999-01-01

    We investigate the possibility to measure the nonforward gluon distribution function by means of diffractively produced charged pion and kaon pairs in polarized lepton nucleon scattering. The resulting cross sections are sizable and are dominated by the gluonic contribution. We find large spin asymmetries, both for pion pairs and for kaon pairs.

  10. Physiological aspects of paired stimulation

    NARCIS (Netherlands)

    Meijler, F.L.; Durrer, D.

    1965-01-01

    In this paper some physiological and clinical aspects of paired stimulation are discussed. I) The augmenting effect of paired stimulation on rnyocardial contractility is due to potentiation (increase in speed of restitution) and fusion of two contractions. 2) While using paired stimulation the oxyg

  11. Cotorsion Pair Extensions

    Institute of Scientific and Technical Information of China (English)

    De Xu ZHOU

    2009-01-01

    Assume that S is an almost excellent extension of R. Using functors Hom R(S,-) and -(×)R S, we establish some connections between classes of modules (L)R and (L)S, cotorsion pairs ((A)R, (A)R)and ((A)S, (B)S). If (L)S is a T-extension or (and) H-extension of (L)R, we show that (L)S is a (resp., monomorphic, epimorphic, special) preenveloping class if and only if so is (L)R. If (S, S) is a TH-extension of ((A)R,(B)R), we obtain that ((A)S,(B)S) is complete (resp., of finite type, of cofinite type, hereditary, perfect, n-tilting) if and only if so is ((A)R,(B)R).

  12. Pairing in hadron structure

    International Nuclear Information System (INIS)

    A many-body approach to hadron structure is presented, in which we consider two parton species: spin-0 (b-partons), and spin-1/2 (f-partons). We extend a boson and a fermion pairing scheme for the b-, and f-partons respectively, into a Yang-Mills gauge theory. The main feature of this theory is that the gauge field is not identified with the usual gluon field variable in QCD. We study the confinement problem of the hadron constituents, and obtain, for low temperatures, partons that are confined by energy gaps. As the critical temperatures for the corresponding phase transitions are approached, the energy gap gradually disappears, and confinement is lost. The theory goes beyond the non-relativistic harmonic oscillator quark model, in the sense of giving physical reasons why a non-relativistic approximation is adequate in describing the internal dynamics of hadron structure. (author)

  13. Multiple origins of asteroid pairs

    Science.gov (United States)

    Jacobson, Seth A.

    2016-01-01

    Rotationally fissioned asteroids produce unbound asteroid pairs that have very similar heliocentric orbits. Backward integration of their current heliocentric orbits provides an age of closest proximity that can be used to date the rotational fission event. Most asteroid pairs follow a predicted theoretical relationship between the primary spin period and the mass ratio of the two pair members that is a direct consequence of the YORP-induced rotational fission hypothesis. If the progenitor asteroid has strength, asteroid pairs may have higher mass ratios or faster rotating primaries. However, the process of secondary fission leaves the originally predicted trend unaltered. We also describe the characteristics of pair members produced by four alternative routes from a rotational fission event to an asteroid pair. Unlike direct formation from the event itself, the age of closest proximity of these pairs cannot generally be used to date the rotational fission event since considerable time may have passed.

  14. Stereo Pair, Honolulu, Oahu

    Science.gov (United States)

    2000-01-01

    Honolulu, on the island of Oahu, is a large and growing urban area. This stereoscopic image pair, combining a Landsat image with topography measured by the Shuttle Radar Topography Mission (SRTM), shows how topography controls the urban pattern. This color image can be viewed in 3-D by viewing the left image with the right eye and the right image with the left eye (cross-eyed viewing), or by downloading and printing the image pair, and viewing them with a stereoscope.Features of interest in this scene include Diamond Head (an extinct volcano near the bottom of the image), Waikiki Beach (just above Diamond Head), the Punchbowl National Cemetary (another extinct volcano, near the image center), downtown Honolulu and Honolulu harbor (image left-center), and offshore reef patterns. The slopes of the Koolau mountain range are seen in the right half of the image. Clouds commonly hang above ridges and peaks of the Hawaiian Islands, but in this synthesized stereo rendition appear draped directly on the mountains. The clouds are actually about 1000 meters (3300 feet) above sea level.This stereoscopic image pair was generated using topographic data from the Shuttle Radar Topography Mission, combined with a Landsat 7 Thematic Mapper image collected at the same time as the SRTM flight. The topography data were used to create two differing perspectives, one for each eye. When stereoscopically merged, the result is a vertically exaggerated view of the Earth's surface in its full three dimensions. The United States Geological Survey's Earth Resources Observations Systems (EROS) Data Center, Sioux Falls, South Dakota, provided the Landsat data.The Shuttle Radar Topography Mission (SRTM), launched on February 11, 2000, used the same radar instrument that comprised the Spaceborne Imaging Radar-C/X-Band Synthetic Aperture Radar (SIR-C/X-SAR) that flew twice on the Space Shuttle Endeavour in 1994. The mission was designed to collect three-dimensional measurements of the Earth

  15. Pairing interactions and vanishing pairing correlations in hot nuclei

    Energy Technology Data Exchange (ETDEWEB)

    Khan, E.; Giai, Nguyen Van [Institut de Physique Nucleaire, Universite Paris-Sud, IN2P3-CNRS, 91406 Orsay Cedex (France); Sandulescu, N. [Institut de Physique Nucleaire, Universite Paris-Sud, IN2P3-CNRS, 91406 Orsay Cedex (France); Institute for Physics and Nuclear Engineering, P.O. Box MG-6, 76900 Bucharest (Romania)

    2007-03-15

    Finite temperature Hartree-Fock-Bogoliubov calculations are performed in Sn isotopes using Skyrme and zero-range, density-dependent pairing interactions. For both stable and very neutron- rich nuclei the critical temperature at which pairing correlations vanish is independent of the volume/surface nature of the pairing interaction. The value of the critical temperature follows approximately the empirical rule T{sub c} {approx_equal} 0.5 {delta}{sub T=0} for all the calculated isotopes, showing that the critical temperature could be deduced from the pairing gap at zero temperature. On the other hand, the pairing gap at temperatures just below T{sub c} is strongly sensitive to the volume/surface nature of the pairing interaction. (authors)

  16. Stereo Pair, Pasadena, California

    Science.gov (United States)

    2000-01-01

    This stereoscopic image pair is a perspective view that shows the western part of the city of Pasadena, California, looking north toward the San Gabriel Mountains. Portions of the cities of Altadena and La Canada Flintridge are also shown. The cluster of large buildings left of center, at the base of the mountains, is the Jet Propulsion Laboratory. This image shows the power of combining data from different sources to create planning tools to study problems that affect large urban areas. In addition to the well-known earthquake hazards, Southern California is affected by a natural cycle of fire and mudflows. Data shown in this image can be used to predict both how wildfires spread over the terrain and how mudflows are channeled down the canyons.The image was created from three datasets: the Shuttle Radar Topography Mission (SRTM) supplied the elevation, U. S. Geological Survey digital aerial photography provided the image detail, and the Landsat Thematic Mapper provided the color. The United States Geological Survey's Earth Resources Observations Systems (EROS) Data Center, Sioux Falls, South Dakota, provided the Landsat data and the aerial photography. The image can be viewed in 3-D by viewing the left image with the right eye and the right image with the left eye (cross-eyed viewing), or by downloading and printing the image pair, and viewing them with a stereoscope.The Shuttle Radar Topography Mission (SRTM), launched on February 11, 2000, used the same radar instrument that comprised the Spaceborne Imaging Radar-C/X-Band Synthetic Aperture Radar (SIR-C/X-SAR) that flew twice on the Space Shuttle Endeavour in 1994. The mission was designed to collect three-dimensional measurements of the Earth's surface. To collect the 3-D data, engineers added a 60-meter-long (200-foot) mast, an additional C-band imaging antenna and improved tracking and navigation devices. The mission is a cooperative project between the National Aeronautics and Space Administration (NASA

  17. Pairing the Volcano

    CERN Document Server

    Ionica, Sorina

    2011-01-01

    Isogeny volcanoes are graphs whose vertices are elliptic curves and whose edges are $\\ell$-isogenies. Algorithms allowing to travel on these graphs were developed by Kohel in his thesis (1996) and later on, by Fouquet and Morain (2001). However, up to now, no method was known, to predict, before taking a step on the volcano, the direction of this step. Hence, in Kohel's and Fouquet-Morain algorithms, many steps are taken before choosing the right direction. In particular, ascending or horizontal isogenies are usually found using a trial-and-error approach. In this paper, we propose an alternative method that efficiently finds all points $P$ of order $\\ell$ such that the subgroup generated by $P$ is the kernel of an horizontal or an ascending isogeny. In many cases, our method is faster than previous methods. This is an extended version of a paper published in the proceedings of ANTS 2010. In addition, we treat the case of 2-isogeny volcanoes and we derive from the group structure of the curve and the pairing ...

  18. Multiple origins of asteroid pairs

    CERN Document Server

    Jacobson, Seth A

    2015-01-01

    Rotationally fissioned asteroids produce unbound daughter asteroids that have very similar heliocentric orbits. Backward integration of their current heliocentric orbits provides an age of closest proximity that can be used to date the rotational fission event. Most asteroid pairs follow a predicted theoretical relationship between the primary spin period and the mass ratio of the two pair members that is a direct consequence of the YORP-induced rotational fission hypothesis. If the progenitor asteroid has strength, asteroid pairs may have high mass ratios with possibly fast rotating primaries. However, secondary fission leaves the originally predicted trend unaltered. We also describe the characteristics of pair members produced by four alternative routes from a rotational fission event to an asteroid pair. Unlike direct formation from the event itself, the age of closest proximity of these pairs cannot generally be used to date the rotational fission event since considerable time may have passed.

  19. Cooper pairs in atomic nuclei

    International Nuclear Information System (INIS)

    We describe recent efforts to study Cooper pairs in atomic nuclei. We consider a self-consistent Hartree Fock mean field for the even Sm isotopes and compare results based on three treatments of pairing correlations: a BCS treatment, a number-projected BCS treatment and an exact treatment using the Richardson Ansatz. Significant differences are seen in the pairing correlation energies. Furthermore, because it does not average over the properties of the fermion pairs, the Richardson solution permits a more meaningful definition of the Cooper wave function and of the fraction of pairs that are collective. Our results confirm that only a few pairs near the Fermi surface in realistic atomic nuclei are collective. (Author)

  20. Cooper pairs in atomic nuclei

    Energy Technology Data Exchange (ETDEWEB)

    Pittel, S. [Bartol Research Institute and Department of Physics and Astronomy, University of Delaware, Newark, 19716 Delaware (United States); Dussel, G. G. [Departamento de Fisica J.J. Giambiagi, Universidad de Buenos Aires, 1428 Buenos Aires (Argentina); Dukelsky, J.; Sarriguren, P. [Instituto de Estructura de la Materia, CSIC, Serrano 123, 28006 Madrid (Spain)

    2008-12-15

    We describe recent efforts to study Cooper pairs in atomic nuclei. We consider a self-consistent Hartree Fock mean field for the even Sm isotopes and compare results based on three treatments of pairing correlations: a BCS treatment, a number-projected BCS treatment and an exact treatment using the Richardson Ansatz. Significant differences are seen in the pairing correlation energies. Furthermore, because it does not average over the properties of the fermion pairs, the Richardson solution permits a more meaningful definition of the Cooper wave function and of the fraction of pairs that are collective. Our results confirm that only a few pairs near the Fermi surface in realistic atomic nuclei are collective. (Author)

  1. Cooper pairs in atomic nuclei

    CERN Document Server

    Dussel, G G; Dukelsky, J; Sarriguren, P

    2007-01-01

    We consider the development of Cooper pairs in a self-consistent Hartree Fock mean field for the even Sm isotopes. Results are presented at the level of a BCS treatment, a number-projected BCS treatment and an exact treatment using the Richardson ansatz. While projected BCS captures much of the pairing correlation energy that is absent from BCS, it still misses a sizable correlation energy, typically of order $1 MeV$. Furthermore, because it does not average over the properties of the fermion pairs, the exact Richardson solution permits a more meaningful definition of the Cooper wave function and of the fraction of pairs that are collective.

  2. Controversies in kidney paired donation.

    Science.gov (United States)

    Gentry, Sommer E; Montgomery, Robert A; Segev, Dorry L

    2012-07-01

    Kidney paired donation represented 10% of living kidney donation in the United States in 2011. National registries around the world and several separate registries in the United States arrange paired donations, although with significant variations in their practices. Concerns about ethical considerations, clinical advisability, and the quantitative effectiveness of these approaches in paired donation result in these variations. For instance, although donor travel can be burdensome and might discourage paired donation, it was nearly universal until convincing analysis showed that living donor kidneys can sustain many hours of cold ischemia time without adverse consequences. Opinions also differ about whether the last donor in a chain of paired donation transplants initiated by a nondirected donor should donate immediately to someone on the deceased donor wait-list (a domino or closed chain) or should be asked to wait some length of time and donate to start another sequence of paired donations later (an open chain); some argue that asking the donor to donate later may be coercive, and others focus on balancing the probability that the waiting donor withdraws versus the number of additional transplants if the chain can be continued. Other controversies in paired donation include simultaneous versus nonsimultaneous donor operations, whether to enroll compatible pairs, and interactions with desensitization protocols. Efforts to expand public awareness of and participation in paired donation are needed to generate more transplant opportunities. PMID:22732046

  3. Assessment Strategies for Pair Programming

    Science.gov (United States)

    Hahn, Jan Hendrik; Mentz, Elsa; Meyer, Lukas

    2009-01-01

    Although pair programming has proved its usefulness in teaching and learning programming skills, it is difficult to assess the individual roles and abilities of students whilst programming in pairs. (Note that within this manuscript, the term assessment refers to evaluating individual student performance.) Assessing only the outcomes of a pair…

  4. PERIODIC COMPLEMENTARY BINARY SEQUENCE PAIRS

    Institute of Scientific and Technical Information of China (English)

    XuChengqian; ZhaoXiaoqun

    2002-01-01

    A new set of binary sequences-Periodic Complementary Binary Sequence Pair (PCSP)is proposed .A new class of block design-Difference Family Pair (DFP)is also proposed .The relationship between PCSP and DFP,the properties and exising conditions of PCSP and the recursive constructions for PCSP are given.

  5. PERIODIC COMPLEMENTARY BINARY SEQUENCE PAIRS

    Institute of Scientific and Technical Information of China (English)

    Xu Chengqian; Zhao Xiaoqun

    2002-01-01

    A new set of binary sequences-Periodic Complementary Binary Sequence Pair (PCSP) is proposed. A new class of block design-Difference Family Pair (DFP) is also proposed.The relationship between PCSP and DFP, the properties and existing conditions of PCSP and the recursive constructions for PCSP are given.

  6. Property (RD) for Hecke Pairs

    Energy Technology Data Exchange (ETDEWEB)

    Shirbisheh, Vahid, E-mail: shirbisheh@gmail.com

    2012-06-15

    As the first step towards developing noncommutative geometry over Hecke C{sup Asterisk-Operator }-algebras, we study property (RD) (Rapid Decay) for Hecke pairs. When the subgroup H in a Hecke pair (G, H) is finite, we show that the Hecke pair (G, H) has (RD) if and only if G has (RD). This provides us with a family of examples of Hecke pairs with property (RD). We also adapt Paul Jolissant's works in Jolissaint (J K-Theory 2:723-735, 1989; Trans Amer Math Soc 317(1):167-196, 1990) to the setting of Hecke C{sup Asterisk-Operator }-algebras and show that when a Hecke pair (G, H) has property (RD), the algebra of rapidly decreasing functions on the set of double cosets is closed under holomorphic functional calculus of the associated (reduced) Hecke C{sup Asterisk-Operator }-algebra. Hence they have the same K{sub 0}-groups.

  7. Property (RD) for Hecke Pairs

    Science.gov (United States)

    Shirbisheh, Vahid

    2012-06-01

    As the first step towards developing noncommutative geometry over Hecke C ∗-algebras, we study property (RD) (Rapid Decay) for Hecke pairs. When the subgroup H in a Hecke pair ( G, H) is finite, we show that the Hecke pair ( G, H) has (RD) if and only if G has (RD). This provides us with a family of examples of Hecke pairs with property (RD). We also adapt Paul Jolissant's works in Jolissaint (J K-Theory 2:723-735, 1989; Trans Amer Math Soc 317(1):167-196, 1990) to the setting of Hecke C ∗-algebras and show that when a Hecke pair ( G, H) has property (RD), the algebra of rapidly decreasing functions on the set of double cosets is closed under holomorphic functional calculus of the associated (reduced) Hecke C ∗-algebra. Hence they have the same K 0-groups.

  8. Pairing correlations in exotic nuclei

    CERN Document Server

    Sagawa, H

    2012-01-01

    The BCS and HFB theories which can accommodate the pairing correlations in the ground states of atomic nuclei are presented. As an application of the pairing theories, we investigate the spatial extension of weakly bound Ne and C isotopes by taking into account the pairing correlation with the Hartree-Fock-Bogoliubov (HFB) method and a 3-body model, respectively. We show that the odd-even staggering in the reaction cross sections of $^{30,31,32}$Ne and $^{14,15,16}$C are successfully reproduced, and thus the staggering can be attributed to the unique role of pairing correlations in nuclei far from the stability line. A correlation between a one-neutron separation energy and the anti-halo effect is demonstrated for $s$- and p-waves using the HFB wave functions. We also propose effective density-dependent pairing interactions which reproduce both the neutron-neutron ($nn$) scattering length at zero density and the neutron pairing gap in uniform matter. Then, we apply these interactions to study pairing gaps in ...

  9. Mutations in the paired domain of the human PAX3 gene cause Klein-Waardenburg syndrome (WS-III) as well as Waardenburg syndrome type I (WS-I).

    OpenAIRE

    Hoth, C F; Milunsky, A; Lipsky, N; Sheffer, R; Clarren, S K; Baldwin, C T

    1993-01-01

    Waardenburg syndrome type I (WS-I) is an autosomal dominant disorder characterized by sensorineural hearing loss, dystopia canthorum, pigmentary disturbances, and other developmental defects. Klein-Waardenburg syndrome (WS-III) is a disorder with many of the same characteristics as WS-I and includes musculoskeletal abnormalities. We have recently reported the identification and characterization of one of the first gene defects, in the human PAX3 gene, which causes WS-I. PAX3 is a DNA-binding ...

  10. Pairing Correlations at High Spins

    Science.gov (United States)

    Ma, Hai-Liang; Dong, Bao-Guo; Zhang, Yan; Fan, Ping; Yuan, Da-Qing; Zhu, Shen-Yun; Zhang, Huan-Qiao; Petrache, C. M.; Ragnarsson, I.; Carlsson, B. G.

    The pairing correcting energies at high spins in 161Lu and 138Nd are studied by comparing the results of the cranked-Nilsson-Strutinsky (CNS) and cranked-Nilsson-Strutinsky-Bogoliubov (CNSB) models. It is concluded that the Coriolis effect rather than the rotational alignment effect plays a major role in the reduction of the pairing correlations in the high spin region. Then we proposed an average pairing correction method which not only better reproduces the experimental data comparing with the CNS model but also enables a clean-cut tracing of the configurations thus the full-spin-range discussion on the various rotating bands.

  11. Structural requirements for trans activation of human immunodeficiency virus type 1 long terminal repeat-directed gene expression by tat: importance of base pairing, loop sequence, and bulges in the tat-responsive sequence.

    OpenAIRE

    Roy, S.; Parkin, N T; Rosen, C; Itovitch, J; Sonenberg, N

    1990-01-01

    In order to elucidate the molecular mechanisms of action of the tat-responsive sequence, mutational analysis of the tat-responsive sequence was carried out. The most critical region comprised nucleotides +18 to +44 and included the 3-nucleotide bulge at positions +23 to +25, the loop sequence, and an intact stem. In addition, base pairing up to nucleotide +52 was required for the full magnitude of the trans-activation response. Single-nucleotide bulges at positions +5 to +17 were dispensable....

  12. Pairing versus quarteting coherence length

    CERN Document Server

    Delion, Doru S

    2015-01-01

    We systematically analyse the coherence length in even-even nuclei. The pairing coherence length in the spin-singlet channel for the effective density dependent delta (DDD) and Gaussian interaction is estimated. We consider in our calculations bound states as well as narrow resonances. It turns out that the pairing gaps given by the DDD interaction are similar to those of the Gaussian potential if one renormalizes the radial width to the nuclear radius. The correlations induced by the pairing interaction have in all considered cases a long range character inside the nucleus and decrease towards the surface. The mean coherence length is larger than the geometrical radius for light nuclei and approaches this value for heavy nuclei. The effect of the temperature and states in continuum is investigated. Strong shell effects are evidenced, especially for protons. We generalize this concept to quartets by considering similar relations, but between proton and neutron pairs. The quartet coherence length has a similar...

  13. Pairing mechanisms for binary stars

    CERN Document Server

    Kouwenhoven, M B N; Goodwin, S P; Zwart, S F Portegies; Kaper, L; 10.1002/asna.200811061

    2008-01-01

    Knowledge of the binary population in stellar groupings provides important information about the outcome of the star forming process in different environments. Binarity is also a key ingredient in stellar population studies and is a prerequisite to calibrate the binary evolution channels. In these proceedings we present an overview of several commonly used methods to pair individual stars into binary systems, which we refer to as the pairing function. Many pairing functions are frequently used by observers and computational astronomers, either for the mathematical convenience, or because they roughly describe the expected outcome of the star forming process. We discuss the consequences of each pairing function for the interpretation of observations and numerical simulations. The binary fraction and mass ratio distribution generally depend strongly on the selection of the range in primary spectral type in a sample. These quantities, when derived from a binary survey with a mass-limited sample of target stars, ...

  14. Kramers Pairs in configuration interaction

    DEFF Research Database (Denmark)

    Avery, John Scales; Avery, James Emil

    2003-01-01

    The theory of symmetry-preserving Kramers pair creation operators is reviewed and formulas for applying these operators to configuration interaction calculations are derived. A new and more general type of symmetry-preserving pair creation operator is proposed and shown to commute with the total ...... spin operator and with all of the symmetry operations which leave the core Hamiltonian of a many-electron system invariant. The theory is extended to cases where orthonormality of orbitals of different configurations cannot be assumed.......The theory of symmetry-preserving Kramers pair creation operators is reviewed and formulas for applying these operators to configuration interaction calculations are derived. A new and more general type of symmetry-preserving pair creation operator is proposed and shown to commute with the total...

  15. Kramers Pairs in Configuration Interaction

    DEFF Research Database (Denmark)

    Avery, John Scales; Avery, James Emil

    2003-01-01

    The theory of symmetry-preserving Kramers pair creation operators is reviewed and formulas for applying these operators to configuration interaction calculations are derived. A new and more general type of symmetry-preserving pair creation operator is proposed and shown to commute with the total ...... spin operator and with all of the symmetry operations which leave the core Hamiltonian of a many-electron system invariant. The theory is extended to cases where orthonormality of orbitals of different configurations cannot be assumed.......The theory of symmetry-preserving Kramers pair creation operators is reviewed and formulas for applying these operators to configuration interaction calculations are derived. A new and more general type of symmetry-preserving pair creation operator is proposed and shown to commute with the total...

  16. Pair programming: more than just working together in pairs.

    Directory of Open Access Journals (Sweden)

    Elsa Mentz

    2012-03-01

    Full Text Available Pair programming originated in the industry where focus is placed on the development of a programme at the most costand time-effective manner, and within the parameters of quality. In this context, a specific programming code is not developed individually; rather, two people work together in order to ensure a higher quality programming code and to motivate each other to work at a faster pace. The problem with this approach was that novice programmers lacked the social skills to work in pairs as they had not been exposed to this sufficiently at tertiary level. The demand of the industry, especially in terms of programmers needing to be able to programme together, led to the incorporation of pair programming at tertiary level in the late nineties. The pedagogical principles on which any teaching-learning strategy should be built were, however, largely overlooked during this process. This article firstly looks into the semantic and ontological differences between co-operative and collaborative learning and secondly argues that pair programming, within the context of a social constructivist approach to teaching and learning, can be seen as a co-operative teaching-learning strategy. Pair programming is more than just allowing two students to work together on a programming task. The more structured way, in which pair programming needs to be implemented, concur with the principles of co-operative learning. The article concludes that the correct pedagogical application of pair programming as a co-operative teaching-learning strategy in tertiary education will result in improved learning capital.

  17. Counting pairs of faint galaxies

    CERN Document Server

    Woods, D; Richer, H B; Woods, David; Fahlman, Gregory G; Richer, Harvey B

    1995-01-01

    The number of close pairs of galaxies observed to faint magnitude limits, when compared to nearby samples, determines the interaction or merger rate as a function of redshift. The prevalence of mergers at intermediate redshifts is fundamental to understanding how galaxies evolve and the relative population of galaxy types. Mergers have been used to explain the excess of galaxies in faint blue counts above the numbers expected from no-evolution models. Using deep CFHT (I\\leq24) imaging of a ``blank'' field we find a pair fraction which is consistent with the galaxies in our sample being randomly distributed with no significant excess of ``physical'' close pairs. This is contrary to the pair fraction of 34\\%\\pm9\\% found by Burkey {\\it et al.} for similar magnitude limits and using an identical approach to the pair analysis. Various reasons for this discrepancy are discussed. Colors and morphologies of our close pairs are consistent with the bulk of them being random superpositions although, as indicators of int...

  18. Three carbon pairs in Si

    Energy Technology Data Exchange (ETDEWEB)

    Docaj, A. [Physics Department, Texas Tech University, Lubbock, TX 79409-1051 (United States); Estreicher, S.K., E-mail: Stefan.Estreicher@ttu.edu [Physics Department, Texas Tech University, Lubbock, TX 79409-1051 (United States)

    2012-08-01

    Carbon impurities in Si are common in floating-zone and cast-Si materials. The simplest and most discussed carbon complex is the interstitial-substitutional C{sub i}C{sub s} pair, which readily forms when self-interstitials are present in the material. This pair has three possible configurations, each of which is electrically active. The less common C{sub s}C{sub s} pair has been studied in irradiated material but has also recently been seen in as-grown C-rich cast-Si, which is commonly used to fabricate solar cells. The third pair consists of two interstitial C atoms: C{sub i}C{sub i}. Although its formation probability is low for several reasons, the C{sub i}C{sub i} pair is very stable and electrically inactive. In this contribution, we report preliminary results of first-principles calculations of these three C pairs in Si. The structures, binding energies, vibrational spectra, and electrical activity are predicted.

  19. Pair extended coupled cluster doubles

    CERN Document Server

    Henderson, Thomas M; Scuseria, Gustavo E

    2015-01-01

    The accurate and efficient description of strongly correlated systems remains an important challenge for computational methods. Doubly occupied configuration interaction (DOCI), in which all electrons are paired and no correlations which break these pairs are permitted, can in many cases provide an accurate account of strong correlations, albeit at combinatorial computational cost. Recently, there has been significant interest in a method we refer to as pair coupled cluster doubles (pCCD), a variant of coupled cluster doubles in which the electrons are paired. This is simply because pCCD provides energies nearly identical to those of DOCI, but at mean-field computational cost (disregarding the cost of the two-electron integral transformation). Here, we introduce the more complete pair extended coupled cluster doubles (pECCD) approach which, like pCCD, has mean-field cost and reproduces DOCI energetically. We show that unlike pCCD, pECCD also reproduces the DOCI wave function with high accuracy. Moreoever, pEC...

  20. Nuclear Scissors Mode with Pairing

    CERN Document Server

    Balbutsev, E B; Urban, M; Vinyes, X

    2007-01-01

    The coupled dynamics of the scissors mode and isovector giant quadrupole resonance are studied using a generalized Wigner function moments method taking into account the pair correlations. Equations of motion for angular momentum, quadrupole moment and other relevant collective variables are derived on the basis of the time dependent Hartree-Fock-Bogoliubov equations. Analytical expressions for energy centroids and transitions probabilities are found for the harmonic oscillator model with the quadrupole-quadrupole residual interaction and monopole pairing force. Deformation dependences of energies and $B(M1)$ values are correctly reproduced. The inclusion of pair correlations leads to a drastic improvement in the description of qualitative and quantitative characteristics of the scissors mode.

  1. Pairing effects in nuclear dynamic

    Science.gov (United States)

    Lacroix, Denis; Scamps, Guillaume; Tanimura, Yusuke

    2016-05-01

    In recent years, efforts have been made to account for super-fluidity in time-dependent mean-field description of nuclear dynamic [1-5]. Inclusion of pairing is important to achieve a realistic description of static properties of nuclei. Here,we show that pairing can also affect the nuclear motion. State of the art TDHF approach can describe from small to large amplitude collective motion as well as the collision between nuclei. Very recently, this microscopic approach has been improved to include pairing either in the BCS or HFB framework. Recent applications of the 3D TDHF + BCS (TDHF+BCS) model introduced in [4] will be presented. The role of super-fluidity on collective motion [6, 7], on one- and two-particle transfer [8] and on fission [9, 10] will be illustrated.

  2. Exlusive charmed meson pair production

    CERN Document Server

    Berezhnoy, A V

    2004-01-01

    The experimental data of BELLE Collaboration on the exclusive charmed meson pair production in the process of monophotonic $e^+e^-$-annihilation ($e^+e^-\\to \\gamma^* \\to D\\bar D$) has been studied. It has been shown that these data is described satisfactorily in the frame work of constituent quark model. Our studies have demonstrated that the central production process $e^+e^-\\to e^+e^-\\gamma\\gamma \\to e^+e^-D\\bar D +X$ and the process of monophotonic $e^+e^-$-annihilation yield comparable numbers of the charmed meson pairs.

  3. Instantons in lepton pair production

    Energy Technology Data Exchange (ETDEWEB)

    Brandenburg, A.; Ringwald, A. [Deutsches Elektronen-Synchrotron (DESY), Hamburg (Germany); Utermann, A. [Vrije Univ., Amsterdam (Netherlands). Dept. of Physics and Astronomy

    2006-05-15

    We consider QCD instanton-induced contributions to lepton pair production in hadron-hadron collisions. We relate these contributions to those known from deep inelastic scattering and demonstrate that they can be calculated reliably for sufficiently large momentum transfer. We observe that the instanton contribution to the angular distribution of the lepton pairs at finite momentum transfer strongly violates the Lam-Tung relation - a relation between coefficient functions of the angular distribution which is valid within the framework of ordinary perturbation theory. The drastic violation of this relation, as seen in experimental data, might be related to such instanton-induced effects. (Orig.)

  4. Evolutionary Transitions of MicroRNA-Target Pairs

    KAUST Repository

    Nozawa, Masafumi

    2016-04-27

    How newly generated microRNA (miRNA) genes are integrated into gene regulatory networks during evolution is fundamental in understanding the molecular and evolutionary bases of robustness and plasticity in gene regulation. A recent model proposed that after the birth of a miRNA, the miRNA is generally integrated into the network by decreasing the number of target genes during evolution. However, this decreasing model remains to be carefully examined by considering in vivo conditions. In this study, we therefore compared the number of target genes among miRNAs with different ages, combining experiments with bioinformatics predictions. First, we focused on three Drosophila miRNAs with different ages. As a result, we found that an older miRNA has a greater number of target genes than a younger miRNA, suggesting the increasing number of targets for each miRNA during evolution (increasing model). To further confirm our results, we also predicted all target genes for all miRNAs in D. melanogaster, considering co-expression of miRNAs and mRNAs in vivo. The results obtained also do not support the decreasing model but are reasonably consistent with the increasing model of miRNA-target pairs. Furthermore, our large-scale analyses of currently available experimental data of miRNA-target pairs also showed a weak but the same trend in humans. These results indicate that the current decreasing model of miRNA-target pairs should be reconsidered and the increasing model may be more appropriate to explain the evolutionary transitions of miRNA-target pairs in many organisms.

  5. Pairs of dual periodic frames

    DEFF Research Database (Denmark)

    Christensen, Ole; Goh, Say Song

    2012-01-01

    is needed. The purpose of the present paper is to provide constructions of dual pairs of frames in the setting of the Hilbert space of periodic functions L2(0,2π). The frames constructed are given explicitly as trigonometric polynomials, which allows for an efficient calculation of the coefficients...

  6. Electron pair creation by photons

    NARCIS (Netherlands)

    Holtwijk, Theodoor

    1960-01-01

    In our experiment on the creation of electron pairs a 5 MeV betatron was used as radiation source and a cloud chamber (with magnetic field) was used as detection instrument. The experimental arrangement is described in section 2.1. The cloud chamber was of the overcompression type so that the recove

  7. Calculation of two Belyi pairs

    OpenAIRE

    Dremov, V. A.

    2008-01-01

    We calculate two Belyi pairs using the properties of Mulase-Penkava differential. Details are provided including accurate construction of coordinates, variables and equations. The calculation is a part of the work which results in a catalogue arXiv:0710.2658

  8. Paired Reading: Psycholinguistics in Practice.

    Science.gov (United States)

    Barrett, James Martin

    1987-01-01

    Contends that children need to learn phonic skills, not necessarily through early direct teaching, but through reading experience. Suggests using Paired Reading, which is validated by psycholinguistic reading theory and provides opportunities to learn to read from context and use innate syntactic and semantic knowledge. (SKC)

  9. Pairing Linguistic and Music Intelligences

    Science.gov (United States)

    DiEdwardo, MaryAnn Pasda

    2005-01-01

    This article describes how music in the language classroom setting can be a catalyst for developing reading, writing, and understanding skills. Studies suggest that pairing music and linguistic intelligences in the college classroom improves students' grades and abilities to compose theses statements for research papers in courses that emphasize…

  10. Pairing interaction and Galilei invariance

    International Nuclear Information System (INIS)

    The relation between Galilei invariance and the energy weighted sum rule for a mass dipole operator is discussed using a monopole pairing interaction. It is found that the energy weighted sum rule for the mass dipole operator changes as much as 18% in medium and heavy nuclei. copyright 1997 The American Physical Society

  11. Cooperative interactions between paired domain and homeodomain.

    Science.gov (United States)

    Jun, S; Desplan, C

    1996-09-01

    The Pax proteins are a family of transcriptional regulators involved in many developmental processes in all higher eukaryotes. They are characterized by the presence of a paired domain (PD), a bipartite DNA binding domain composed of two helix-turn-helix (HTH) motifs,the PAI and RED domains. The PD is also often associated with a homeodomain (HD) which is itself able to form homo- and hetero-dimers on DNA. Many of these proteins therefore contain three HTH motifs each able to recognize DNA. However, all PDs recognize highly related DNA sequences, and most HDs also recognize almost identical sites. We show here that different Pax proteins use multiple combinations of their HTHs to recognize several types of target sites. For instance, the Drosophila Paired protein can bind, in vitro, exclusively through its PAI domain, or through a dimer of its HD, or through cooperative interaction between PAI domain and HD. However, prd function in vivo requires the synergistic action of both the PAI domain and the HD. Pax proteins with only a PD appear to require both PAI and RED domains, while a Pax-6 isoform and a new Pax protein, Lune, may rely on the RED domain and HD. We propose a model by which Pax proteins recognize different target genes in vivo through various combinations of their DNA binding domains, thus expanding their recognition repertoire. PMID:8787739

  12. How to motivate developers to pair program?

    OpenAIRE

    Haara, Johanna

    2016-01-01

    Many developers are needed to develop large software. Successful development demands communication and teamwork and pair programming improves them. One practice of Extreme Programming is pair programming, which means that developers work together a task. This case study studied how to motivate developers to pair program. The benefits, cost and ways to pair program were studied. In addition, affect of general motivation and Belbin’s team roles to pair programming were studied. The study w...

  13. Instability of vortex pair leapfrogging

    DEFF Research Database (Denmark)

    Tophøj, Laust; Aref, Hassan

    2013-01-01

    linear system with time-periodic coefficients and perform a Floquet analysis. We find transition from linearly unstable to stable leapfrogging at α = φ2 ≈ 0.381966, where is the golden ratio. Acheson also suggested that there was a sharp transition between a "disintegration" instability mode, where two......Leapfrogging is a periodic solution of the four-vortex problem with two positive and two negative point vortices all of the same absolute circulation arranged as co-axial vortex pairs. The set of co-axial motions can be parameterized by the ratio 0 ... pair passes through the other. Leapfrogging occurs for α > σ2, where is the silver ratio. The motion is known in full analytical detail since the 1877 thesis of Gröbli and a well known 1894 paper by Love. Acheson ["Instability of vortex leapfrogging," Eur. J. Phys.21, 269-273 (2000...

  14. Germline progenitors escape the widespread phenomenon of homolog pairing during Drosophila development.

    Directory of Open Access Journals (Sweden)

    Eric F Joyce

    Full Text Available Homolog pairing, which plays a critical role in meiosis, poses a potential risk if it occurs in inappropriate tissues or between nonallelic sites, as it can lead to changes in gene expression, chromosome entanglements, and loss-of-heterozygosity due to mitotic recombination. This is particularly true in Drosophila, which supports organismal-wide pairing throughout development. Discovered over a century ago, such extensive pairing has led to the perception that germline pairing in the adult gonad is an extension of the pairing established during embryogenesis and, therefore, differs from the mechanism utilized in most species to initiate pairing specifically in the germline. Here, we show that, contrary to long-standing assumptions, Drosophila meiotic pairing in the gonad is not an extension of pairing established during embryogenesis. Instead, we find that homologous chromosomes are unpaired in primordial germ cells from the moment the germline can be distinguished from the soma in the embryo and remain unpaired even in the germline stem cells of the adult gonad. We further establish that pairing originates immediately after the stem cell stage. This pairing occurs well before the initiation of meiosis and, strikingly, continues through the several mitotic divisions preceding meiosis. These discoveries indicate that the spatial organization of the Drosophila genome differs between the germline and the soma from the earliest moments of development and thus argue that homolog pairing in the germline is an active process as versus a passive continuation of pairing established during embryogenesis.

  15. One-dimensional Cooper pairing

    International Nuclear Information System (INIS)

    Exact solutions for electron pairing in a 1D Fermi gas under different separable interactions. Energy dispersion relations for arbitrary values of center-of-mass momenta and interaction strengths. Results reveal linear and roton-like modes. Effects due to finite range parameters in the interaction. We study electron pairing in a one-dimensional (1D) fermion gas at zero temperature under zero- and finite-range, attractive, two-body interactions. The binding energy of Cooper pairs (CPs) with zero total or center-of-mass momentum (CMM) increases with attraction strength and decreases with interaction range for fixed strength. The excitation energy of 1D CPs with nonzero CMM display novel, unique properties. It satisfies a dispersion relation with two branches: a phonon-like linear excitation for small CP CMM; this is followed by roton-like quadratic excitation minimum for CMM greater than twice the Fermi wavenumber, but only above a minimum threshold attraction strength. The expected quadratic-in-CMM dispersion in vacuo when the Fermi wavenumber is set to zero is recovered for any coupling. This paper completes a three-part exploration initiated in 2D and continued in 3D.

  16. Creating Knockouts of Conserved Oligomeric Golgi Complex Subunits Using CRISPR-Mediated Gene Editing Paired with a Selection Strategy Based on Glycosylation Defects Associated with Impaired COG Complex Function.

    Science.gov (United States)

    Blackburn, Jessica Bailey; Lupashin, Vladimir V

    2016-01-01

    The conserved oligomeric Golgi (COG) complex is a key evolutionally conserved multisubunit protein machinery that regulates tethering and fusion of intra-Golgi transport vesicles. The Golgi apparatus specifically promotes sorting and complex glycosylation of glycoconjugates. Without proper glycosylation and processing, proteins and lipids will be mislocalized and/or have impaired function. The Golgi glycosylation machinery is kept in homeostasis by a careful balance of anterograde and retrograde trafficking to ensure proper localization of the glycosylation enzymes and their substrates. This balance, like other steps of membrane trafficking, is maintained by vesicle trafficking machinery that includes COPI vesicular coat proteins, SNAREs, Rabs, and both coiled-coil and multi-subunit vesicular tethers. The COG complex interacts with other membrane trafficking components and is essential for proper localization of Golgi glycosylation machinery. Here we describe using CRISPR-mediated gene editing coupled with a phenotype-based selection strategy directly linked to the COG complex's role in glycosylation homeostasis to obtain COG complex subunit knockouts (KOs). This has resulted in clonal KOs for each COG subunit in HEK293T cells and gives the ability to further probe the role of the COG complex in Golgi homeostasis. PMID:27632008

  17. Compton Scattering, Pair Annihilation and Pair Production in a Plasma

    OpenAIRE

    Krishan, Vinod

    1999-01-01

    The square of the four momentum of a photon in vacuum is zero. However, in an unmagnetized plasma it is equal to the square of the plasma frequency. Further, the electron-photon coupling vertex is modified in a plasma to include the effect of the plasma medium. I calculate the cross sections of the three processes - the Compton scattering, electron-positron pair annihilation and production in a plasma. At high plasma densities, the cross sections are found to change significantly. Such high p...

  18. Pair Tunneling through Single Molecules

    Science.gov (United States)

    Raikh, Mikhail

    2007-03-01

    Coupling to molecular vibrations induces a polaronic shift, and can lead to a negative charging energy, U. For negative U, the occupation of the ground state of the molecule is even. In this situation, virtual pair transitions between the molecule and the leads can dominate electron transport. At low temperature, T, these transitions give rise to the charge-Kondo effect [1]. We developed the electron transport theory through the negative-U molecule [2] at relatively high T, when the Kondo correlations are suppressed. Two physical ingredients distinguish our theory from the transport through a superconducting grain coupled to the normal leads [3]: (i) in parallel with sequential pair-tunneling processes, single-particle cotunneling processes take place; (ii) the electron pair on the molecule can be created (or annihilated) by two electrons tunneling in from (or out to) opposite leads. We found that, even within the rate-equation description, the behavior of differential conductance through the negative-U molecule as function of the gate voltage is quite peculiar: the height of the peak near the degeneracy point is independent of temperature, while its width is proportional to T. This is in contrast to the ordinary Coulomb-blockade conductance peak, whose integral strength is T-independent. At finite source-drain bias, V>>T, the width of the conductance peak is ˜V, whereas the conventional Coulomb-blockade peak at finite V splits into two sharp peaks at detunings V/2, and -V/2. Possible applications to the gate-controlled current rectification and switching will be discussed. [1] A. Taraphder and P. Coleman, Phys. Rev. Lett. 66, 2814 (1991). [2] J. Koch, M. E. Raikh, and F. von Oppen, Phys. Rev. Lett. 96, 056803 (2006). [3] F. W. J. Hekking, L. I. Glazman, K. A. Matveev, and R. I. Shekhter, Phys. Rev. Lett. 70, 4138 (1993).

  19. Neutron-Proton pairing revisited

    OpenAIRE

    Friedman, W. A.; Bertsch, G. F.

    2007-01-01

    We reexamine neutron-proton pairing as a phenomenon that should be explanable in a microscopic theory of nuclear binding energies. Empirically, there is an increased separation energy when both neutron and proton numbers are even or if they are both odd. The enhancement is present at some level in nearly all nuclei: the separation energy difference has the opposite sign in less than 1% of the cases in which sufficient data exist. We discuss the possible origin of the effect in the context of ...

  20. Working pairs for resorption refrigerator

    International Nuclear Information System (INIS)

    The performances of three chemisorption working pairs operating under the resorption cycle were studied gravimetrically by comparing the desorbed and adsorbed mass of refrigerant in different operation conditions. All pairs used NH3 as refrigerant and MnCl2 in the main reactor, but each one used a different salt for the cooling effect production in the secondary reactor. These salts were NH4Cl or NaBr or BaCl2. The experimental results indicated that the degree of conversion in reaction between the NH3 and BaCl2 was inferior to 25% during cooling production at 0 oC or below, whereas the reactions with the other salts had conversions of at least 80%. When the systems operated with heat source temperature for the main reactor at 155 oC, heat sink temperature for both reactors at 30 oC, and cooling effect production temperature at 0 oC the coefficient of performance (COP) of the system using NH4Cl and the system using NaBr were similar and around 0.30; however, the former system had a specific cooling power (SCP) 5% higher than that of the latter system. Because the reaction in the system with NH4Cl was practically halted in a period much shorter than that used in the experiments, it is possible to expect that if the period of the cooling period was shortened, the difference between the SCP of those systems would be much higher. - Highlights: → The comparison of three different working pairs operating under resorption cycle was conducted. → The three working pairs were NH4Cl/MnCl2, NaBr/MnCl2, BaCl2/MnCl2, respectively. → The mass of refrigerant reacted in different situations were measured and compared. → Among the LTS studied, NH4Cl is the most suitable to be used in a resorption machine at 0 or below 0 oC.

  1. Rashba Splitting of Cooper Pairs

    Science.gov (United States)

    Shekhter, R. I.; Entin-Wohlman, O.; Jonson, M.; Aharony, A.

    2016-05-01

    We investigate theoretically the properties of a weak link between two superconducting leads, which has the form of a nonsuperconducting nanowire with a strong Rashba spin-orbit coupling caused by an electric field. In the Coulomb-blockade regime of single-electron tunneling, we find that such a weak link acts as a "spin splitter" of the spin states of Cooper pairs tunneling through the link, to an extent that depends on the direction of the electric field. We show that the Josephson current is sensitive to interference between the resulting two transmission channels, one where the spins of both members of a Cooper pair are preserved and one where they are both flipped. As a result, the current is a periodic function of the strength of the spin-orbit interaction and of the bending angle of the nanowire (when mechanically bent); an identical effect appears due to strain-induced spin-orbit coupling. In contrast, no spin-orbit induced interference effect can influence the current through a single weak link connecting two normal metals.

  2. Bound Polaron Pair Formation in Poly (phenylenevinylenes)

    Science.gov (United States)

    Rothberg, Lewis

    The following sections are included: * INTRODUCTION * PHOTOGENERATED YIELD OF SINGLET EXCITONS * AGGREGRATION EFFECTS ON EXCITED STATE PHOTO-GENERATION * ASSIGNMENT TO BOUND POLARON PAIRS AND DISCUSSION * PROBLEMS WITH THE BOUND POLARON PAIR PICTURE AND CONCLUSION * REFERENCES

  3. LOD wars: The affected-sib-pair paradigm strikes back!

    Energy Technology Data Exchange (ETDEWEB)

    Farrall, M. [Wellcome Trust Centre for Human Genetics, Oxford (United Kingdom)

    1997-03-01

    In a recent letter, Greenberg et al. aired their concerns that the affected-sib-pair (ASP) approach was becoming excessively popular, owing to misconceptions and ignorance of the properties and limitations of both the ASP and the classic LOD-score approaches. As an enthusiast of using the ASP approach to map susceptibility genes for multifactorial traits, I would like to contribute a few comments and explanatory notes in defense of the ASP paradigm. 18 refs.

  4. Discovering Implicit Entity Relation with the Gene-Citation-Gene Network

    OpenAIRE

    Min Song; Nam-Gi Han; Yong-Hwan Kim; Ying Ding; Tamy Chambers

    2013-01-01

    In this paper, we apply the entitymetrics model to our constructed Gene-Citation-Gene (GCG) network. Based on the premise there is a hidden, but plausible, relationship between an entity in one article and an entity in its citing article, we constructed a GCG network of gene pairs implicitly connected through citation. We compare the performance of this GCG network to a gene-gene (GG) network constructed over the same corpus but which uses gene pairs explicitly connected through traditional c...

  5. Stability theorems for symplectic and contact pairs

    OpenAIRE

    Bande, G.; Ghiggini, P.; Kotschick, D.

    2004-01-01

    We prove Gray--Moser stability theorems for complementary pairs of forms of constant class defining symplectic pairs, contact-symplectic pairs and contact pairs. We also consider the case of contact-symplectic and contact-contact structures, in which the constant class condition on a one-form is replaced by the condition that its kernel hyperplane distribution have constant class in the sense of E. Cartan.

  6. Pair bonds: arrival synchrony in migratory birds.

    Science.gov (United States)

    Gunnarsson, T G; Gill, J A; Sigurbjörnsson, T; Sutherland, W J

    2004-10-01

    Synchronous arrival of pairs of migratory birds at their breeding grounds is important for maintaining pair bonds and is achieved by pairs that remain together all year round. Here we show that arrival is also synchronized in paired individuals of a migratory shorebird, the black-tailed godwit (Limosa limosa islandica), even though they winter hundreds of kilometres apart and do not migrate together. The mechanisms required to achieve this synchrony and prevent 'divorce' illustrate the complexity of migratory systems. PMID:15470417

  7. Properties of isocalar-pair condensates

    CERN Document Server

    Van Isacker, P; Fallon, P; Zerguine, S

    2016-01-01

    It is pointed out that the ground state of n neutrons and n protons in a single-j shell, interacting through an isoscalar (T=0) pairing force, is not paired, J=0, but rather spin-aligned, J=n. This observation is explained in the context of a model of isoscalar P (J=1) pairs, which is mapped onto a system of p bosons, leading to an approximate analytic solution of the isoscalar-pairing limit in jj coupling.

  8. On one-sided torsion pair

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    Motivated by the concept of a torsion pair in a pre-triangulated category induced by Beligiannis and Reiten, the notion of a left (right) torsion pair in the left (right) triangulated category is introduced and investigated. We provide new connections between different aspects of torsion pairs in one-sided triangulated categories, pre-triangulated categories, stable categories and derived categories.

  9. Angular momentum decomposition of Richardson's pairs

    International Nuclear Information System (INIS)

    The angular momentum decomposition of pairs obtained using Richardson's exact solution of the pairing Hamiltonian for the deformed 174Yb nucleus are displayed. The probabilities for low angular momenta of the collective pairs are strikingly different from the ones obtained in the BCS ground state

  10. Drift wave in pair-ion plasma

    Indian Academy of Sciences (India)

    Samiran Ghosh; Nikhil Chakrabarti; Manoranjan Khan; M R Gupta

    2013-02-01

    The conditions for the existence of low-frequency electrostatic drift wave in pair-ion plasma are discussed. It is shown that the temperature and/or mass difference of both species could produce drift wave in a pair-ion plasma. The results are discussed in the context of the fullerene pair-ion plasma experiment.

  11. Perturbations of vortex ring pairs

    CERN Document Server

    Gubser, Steven S; Parikh, Sarthak

    2015-01-01

    We study pairs of co-axial vortex rings starting from the action for a classical bosonic string in a three-form background. We complete earlier work on the phase diagram of classical orbits by explicitly considering the case where the circulations of the two vortex rings are equal and opposite. We then go on to study perturbations, focusing on cases where the relevant four-dimensional transfer matrix splits into two-dimensional blocks. When the circulations of the rings have the same sign, instabilities are mostly limited to wavelengths smaller than a dynamically generated length scale at which single-ring instabilities occur. When the circulations have the opposite sign, larger wavelength instabilities can occur.

  12. QUANTUM CRYPTOGRAPHY WITH PHOTON PAIRS

    Directory of Open Access Journals (Sweden)

    Anand Sharma,

    2010-07-01

    Full Text Available Quantum cryptographic systems use quantum mechanical concepts that are based on qubit superposition of states, and on the no cloning or no copying theorem to establish unbreakable cipher keys. The basic idea of quantum cryptography is to send the key in the form of photons over a public channel, encoding the zeros and one on quantum states in such a way that any eavesdropping attempt can be detected. Using optical communications the most commonly quantum mechanical property used is the polarization state of photon. However, in most quantum cryptographic algorithms a random polarization state is required. The photons are ideal for low loss transport, either in free space or in optical fibers, i.e. we have the full arsenal of fiber optic technology at our disposal. In this paper we are describing the process of quantum cryptography with photon pairs.

  13. Perturbations of vortex ring pairs

    Science.gov (United States)

    Gubser, Steven S.; Horn, Bart; Parikh, Sarthak

    2016-02-01

    We study pairs of coaxial vortex rings starting from the action for a classical bosonic string in a three-form background. We complete earlier work on the phase diagram of classical orbits by explicitly considering the case where the circulations of the two vortex rings are equal and opposite. We then go on to study perturbations, focusing on cases where the relevant four-dimensional transfer matrix splits into two-dimensional blocks. When the circulations of the rings have the same sign, instabilities are mostly limited to wavelengths smaller than a dynamically generated length scale at which single-ring instabilities occur. When the circulations have the opposite sign, larger wavelength instabilities can occur.

  14. Gene therapy in periodontics

    OpenAIRE

    Anirban Chatterjee; Nidhi Singh; Mini Saluja

    2013-01-01

    GENES are made of DNA - the code of life. They are made up of two types of base pair from different number of hydrogen bonds AT, GC which can be turned into instruction. Everyone inherits genes from their parents and passes them on in turn to their children. Every person′s genes are different, and the changes in sequence determine the inherited differences between each of us. Some changes, usually in a single gene, may cause serious diseases. Gene therapy is ′the use of genes as medicine′. It...

  15. Factors affecting home range of mallard pairs

    Energy Technology Data Exchange (ETDEWEB)

    Riechmann, J.H.

    1976-06-01

    Certain habitat and social factors were investigated for their effect on home range size of mallard (Anas platyhynchos) pairs breeding in a forested region of north-central Minnesota during the spring of 1971--72. Data from 31 radio-marked hens and drakes were used, but primary emphasis was placed on 8 pairs (5 with both members of the pair marked). Pairs were radio-tracked on river marsh areas, river channels, and large sand lakes to provide comparative data for evaluating home range size differences. Home ranges varied from an average of 53 ha for pairs using primarily river habitat to 871 ha for pairs using only large sand lakes. River and lake shorelines varied considerably in species and density of vegetation. Interaction between pairs as well as density of flocked males appeared to be influenced by these habitat differences with resultant effects on home range sizes.

  16. On Minus Paired-Domination in Graphs

    Institute of Scientific and Technical Information of China (English)

    邢化明; 孙良

    2003-01-01

    The study of minus paired-domination of a graph G=(V,E) is initiated. Let SV be any paired-dominating set of G, a minus paired-dominating function is a function of the form f∶V→{-1,0,1} such that f(v)=1 for v∈S, f(v)≤0 for v∈V-S, and f(N[v])≥1 for all v∈V. The weight of a minus paired-dominating function f is w(f)=∑f(v), over all vertices v∈V. The minus paired-domination number of a graph G is γ-p(G)=min{w(f)|f is a minus paired-dominating function of G}. On the basis of the minus paired-domination number of a graph G defined, some of its properties are discussed.

  17. Cumulative Paired φ-Entropy

    Directory of Open Access Journals (Sweden)

    Ingo Klein

    2016-07-01

    Full Text Available A new kind of entropy will be introduced which generalizes both the differential entropy and the cumulative (residual entropy. The generalization is twofold. First, we simultaneously define the entropy for cumulative distribution functions (cdfs and survivor functions (sfs, instead of defining it separately for densities, cdfs, or sfs. Secondly, we consider a general “entropy generating function” φ, the same way Burbea et al. (IEEE Trans. Inf. Theory 1982, 28, 489–495 and Liese et al. (Convex Statistical Distances; Teubner-Verlag, 1987 did in the context of φ-divergences. Combining the ideas of φ-entropy and cumulative entropy leads to the new “cumulative paired φ-entropy” ( C P E φ . This new entropy has already been discussed in at least four scientific disciplines, be it with certain modifications or simplifications. In the fuzzy set theory, for example, cumulative paired φ-entropies were defined for membership functions, whereas in uncertainty and reliability theories some variations of C P E φ were recently considered as measures of information. With a single exception, the discussions in the scientific disciplines appear to be held independently of each other. We consider C P E φ for continuous cdfs and show that C P E φ is rather a measure of dispersion than a measure of information. In the first place, this will be demonstrated by deriving an upper bound which is determined by the standard deviation and by solving the maximum entropy problem under the restriction of a fixed variance. Next, this paper specifically shows that C P E φ satisfies the axioms of a dispersion measure. The corresponding dispersion functional can easily be estimated by an L-estimator, containing all its known asymptotic properties. C P E φ is the basis for several related concepts like mutual φ-information, φ-correlation, and φ-regression, which generalize Gini correlation and Gini regression. In addition, linear rank tests for scale that

  18. Report on Pairing-based Cryptography.

    Science.gov (United States)

    Moody, Dustin; Peralta, Rene; Perlner, Ray; Regenscheid, Andrew; Roginsky, Allen; Chen, Lily

    2015-01-01

    This report summarizes study results on pairing-based cryptography. The main purpose of the study is to form NIST's position on standardizing and recommending pairing-based cryptography schemes currently published in research literature and standardized in other standard bodies. The report reviews the mathematical background of pairings. This includes topics such as pairing-friendly elliptic curves and how to compute various pairings. It includes a brief introduction to existing identity-based encryption (IBE) schemes and other cryptographic schemes using pairing technology. The report provides a complete study of the current status of standard activities on pairing-based cryptographic schemes. It explores different application scenarios for pairing-based cryptography schemes. As an important aspect of adopting pairing-based schemes, the report also considers the challenges inherent in validation testing of cryptographic algorithms and modules. Based on the study, the report suggests an approach for including pairing-based cryptography schemes in the NIST cryptographic toolkit. The report also outlines several questions that will require further study if this approach is followed.

  19. Pulsational-Pair Instability Supernovae

    CERN Document Server

    Woosley, S E

    2016-01-01

    The final evolution of stars in the mass range 60 - 150 solar masses is explored. Depending upon their mass loss and rotation rates, many of these stars will end their lives as pulsational pair-instability supernovae. Even a non-rotating 70 solar mass star is pulsationally unstable during oxygen shell burning and can power a sub-luminous supernova. Rotation decreases the limit further. For more massive stars, the pulsations are less frequent, span a longer time, and are more powerful. Violent pulsations eject not only any residual low density envelope, but also that fraction of the helium core mass outside about 35 - 50 solar masses. The remaining core of helium and heavy elements continues to evolve, ultimately forming an iron core of about 2.5 solar masses that probably collapses to a black hole. A variety of observational transients result with total durations ranging from days to 10,000 years, and luminosities from 10$^{41}$ to 10$^{44}$ erg s$^{-1}$. Many transients resemble ordinary Type IIp supernovae,...

  20. PANDAseq: paired-end assembler for illumina sequences

    Directory of Open Access Journals (Sweden)

    Masella Andre P

    2012-02-01

    Full Text Available Abstract Background Illumina paired-end reads are used to analyse microbial communities by targeting amplicons of the 16S rRNA gene. Publicly available tools are needed to assemble overlapping paired-end reads while correcting mismatches and uncalled bases; many errors could be corrected to obtain higher sequence yields using quality information. Results PANDAseq assembles paired-end reads rapidly and with the correction of most errors. Uncertain error corrections come from reads with many low-quality bases identified by upstream processing. Benchmarks were done using real error masks on simulated data, a pure source template, and a pooled template of genomic DNA from known organisms. PANDAseq assembled reads more rapidly and with reduced error incorporation compared to alternative methods. Conclusions PANDAseq rapidly assembles sequences and scales to billions of paired-end reads. Assembly of control libraries showed a 4-50% increase in the number of assembled sequences over naïve assembly with negligible loss of "good" sequence.

  1. Pair programming in education: a literature review

    Science.gov (United States)

    Hanks, Brian; Fitzgerald, Sue; McCauley, Renée; Murphy, Laurie; Zander, Carol

    2011-06-01

    This article provides a review of educational research literature focused on pair programming in the undergraduate computer science curriculum. Research suggests that the benefits of pair programming include increased success rates in introductory courses, increased retention in the major, higher quality software, higher student confidence in solutions, and improvement in learning outcomes. Moreover, there is some evidence that women, in particular, benefit from pair programming. The literature also provides evidence that the transition from paired to solo programming is easy for students. The greatest challenges for paired students appear to concern scheduling and partner compatibility. This review also considers practical issues such as assigning partners, teaching students to work in pairs, and assessing individual contributions, and concludes with a discussion of open research questions.

  2. A New Secure Pairing Protocol using Biometrics

    OpenAIRE

    Buhan, I.R.

    2008-01-01

    Secure Pairing enables two devices, which share no prior context with each other, to agree upon a security association that they can use to protect their subsequent communication. Secure pairing offers guarantees of the association partner identity and it should be resistant to eavesdropping or to a man-in-the-middle attack. We propose a user friendly solution to this problem. Keys extracted from biometric data of the participants are used for authentication. Details of the pairing protocol a...

  3. Pairing and specific heat in hot nuclei

    OpenAIRE

    Gambacurta, Danilo; Lacroix, Denis; Sandulescu, Nicu

    2013-01-01

    The thermodynamics of pairing phase-transition in nuclei is studied in the canonical ensemble and treating the pairing correlations in a finite-temperature variation after projection BCS approach (FT-VAP). Due to the restoration of particle number conservation, the pairing gap and the specific heat calculated in the FT-VAP approach vary smoothly with the temperature, indicating a gradual transition from the superfluid to the normal phase, as expected in finite systems. We have checked that th...

  4. Top pair production distributions at the Tevatron

    Directory of Open Access Journals (Sweden)

    Takeuchi Yuji

    2013-05-01

    Full Text Available At the Tevatron, the top quark is mainly produced in pairs through the strong interaction and decays before forming hadrons. Thus the kinematical distributions at top pair production possess rich information on the tt¯$tar t$ production vertex including polarizations of top and anti-top quarks. In this article, recent measurements on top quark pair production distributions at Tevatron (CDF and DO are presented.

  5. Dispersion Compensation using a Prism-pair

    OpenAIRE

    Shaked, Yaakov; Yefet, Shai; Pe'er, Avi

    2014-01-01

    A simple and intuitive formulation is reviewed for the Brewster prism-pair - A most common component in spectroscopy-oriented experiments using ultrashort pulses. This review aims to provide students and beginners in the field of spectroscopy with a unified description of a major experimental component. The total spectral phase experienced by a broadband light field is calculated after passing through a pair of Brewster-cut prisms, demonstrating the flexibility of the prism pair to provide tu...

  6. Density dependence of the pairing interaction and pairing correlation in unstable nuclei

    CERN Document Server

    Changizi, S A

    2015-01-01

    This work aims at a global assessment of the effect of the density dependence of the zero-range pairing interaction. Systematic Skyrme-Hartree-Fock-Bogoliubov calculations with the volume, surface and mixed pairing forces are carried out to study the pairing gaps in even-even nuclei over the whole nuclear chart. Calculations are also done in coordinate representation for unstable semi-magic even-even nuclei. The calculated pairing gaps are compared with empirical values from four different odd-even staggering formulae. Calculations with the three pairing interactions are comparable for most nuclei close to $\\beta$-stability line. However, the surface interaction calculations predict neutron pairing gaps in neutron-rich nuclei that are significantly stronger than those given by the mixed and volume pairing. On the other hand, calculations with volume and mixed pairing forces show noticeable reduction of neutron pairing gaps in nuclei far from the stability.

  7. A pair of solar spike emissions

    Institute of Scientific and Technical Information of China (English)

    LIU; Yuying(刘玉英); FU; Qijun(傅其骏); QIN; Zhihai(秦志海); HUANG; Guangli(黄光力); WANG; Ming(汪敏)

    2002-01-01

    Using the 2.6-3.8 GHz solar radio spectrometer of the National Astronomical Observatories of China (NAOC), a pair of microwave millisecond spike (MMS) emissions were observed, and their frequency drift rate was measured. The separatrix frequency of the MMS pair was at 2900 MHz. Its emission layer was about 2×104km above the photosphere. The polarization degree was wave-like variation with an average value of about 25% in LCP. An MMS pair differs greatly from the type III bursts pair. For the latter, in a certain frequency range, there is no emission around separatrix frequency. This phenomenon may help better understand the mechanism of MMS.

  8. Finding Maximal Pairs with Bounded Gap

    DEFF Research Database (Denmark)

    Brodal, Gerth Stølting; Lyngsø, Rune B.; Pedersen, Christian N. S.;

    1999-01-01

    A pair in a string is the occurrence of the same substring twice. A pair is maximal if the two occurrences of the substring cannot be extended to the left and right without making them different. The gap of a pair is the number of characters between the two occurrences of the substring. In this p......A pair in a string is the occurrence of the same substring twice. A pair is maximal if the two occurrences of the substring cannot be extended to the left and right without making them different. The gap of a pair is the number of characters between the two occurrences of the substring....... In this paper we present methods for finding all maximal pairs under various constraints on the gap. In a string of length n we can find all maximal pairs with gap in an upper and lower bounded interval in time O(n log n+z) where z is the number of reported pairs. If the upper bound is removed the time reduces...

  9. Pair plasma in pulsar magnetospheres

    International Nuclear Information System (INIS)

    The main features of radiation received from pulsars imply that they are neutron stars which contain an extremely intense magnetic field and emit coherently in the radio domain. Most recent studies attribute the origin of the coherence to plasma instabilities arising in pulsar magnetospheres; they mainly concern the linear, or the nonlinear, character of the involved unstable waves. We briefly introduce radio pulsars and specify physical conditions in pulsar emission regions: geometrical properties, magnetic field, pair creation processes and repartition of relativistic charged particles. We point to the main ingredients of the linear theory, extensively explored since the 1970s: (i) a dispersion relation specific to the pulsar case; (ii) the characteristics of the waves able to propagate in relativistic pulsar plasmas; (iii) the different ways in which a two-humped distribution of particles may arise in a pulsar magnetosphere and favour the development of a two-stream instability. We sum up recent improvements of the linear theory: (i) the determination of a 'coupling function' responsible for high values of the wave field components and electromagnetic energy available; (ii) the obtention of new dispersion relations for actually anisotropic pulsar plasmas with relativistic motions and temperatures; (iii) the interaction between a plasma and a beam, both with relativistic motions and temperatures; (iv) the interpretation of observed 'coral' and 'conal' features, associated with the presence of boundaries and curved magnetic field lines in the emission region; (v) the detailed topology of the magnetic field in the different parts of the emission region and its relation to models recently proposed to interpret drifting subpulses observed from PSR 0943+10, showing 20 sub-beams of emission. We relate the nonlinear evolution of the two-stream instability and development of strong turbulence in relativistic pulsar plasmas to the emergence of relativistic solitons, able

  10. Open string pair creation from worldsheet instantons

    Energy Technology Data Exchange (ETDEWEB)

    Schubert, Christian [Max-Planck-Institut fuer Gravitationsphysik, Albert-Einstein-Institut, Muehlenberg 1, D-14476 Potsdam (Germany); Torrielli, Alessandro [Institute for Theoretical Physics and Spinoza Institute, Utrecht University, Leuvenlaan 4, 3584 CE Utrecht (Netherlands)

    2010-10-08

    Worldline instantons provide a particularly elegant way to derive Schwinger's well-known formula for the pair creation rate due to a constant electric field in quantum electrodynamics. In this communication, we show how to extend this method to the corresponding problem of open string pair creation. (fast track communication)

  11. A Review of Pair-wise Testing

    OpenAIRE

    Sanchez, Jimi

    2016-01-01

    In software testing, the large size of the input domain makes exhaustively testing the inputs a daunting and often impossible task. Pair-wise testing is a popular approach to combinatorial testing problems. This paper reviews Pair-wise testing and its history, strengths, weaknesses, and tools for generating test cases.

  12. Bidirectional Synonym Ratings of 464 Noun Pairs.

    Science.gov (United States)

    Whitten, William B.; And Others

    1979-01-01

    Each of 464 noun pairs was rated for synonymy on a seven-point scale by college students to provide an extensive set of synonym pairs for use as stimuli in experiments, and to evaluate the effects of word encoding order on perceived synonymy. (SW)

  13. Pair Programming in Education: A Literature Review

    Science.gov (United States)

    Hanks, Brian; Fitzgerald, Sue; McCauley, Renee; Murphy, Laurie; Zander, Carol

    2011-01-01

    This article provides a review of educational research literature focused on pair programming in the undergraduate computer science curriculum. Research suggests that the benefits of pair programming include increased success rates in introductory courses, increased retention in the major, higher quality software, higher student confidence in…

  14. Transrelativistic pair plasmas in AGN jets

    DEFF Research Database (Denmark)

    Bottcher, M.; Pohl, M.; Schlickeiser, R.

    1999-01-01

    Models of relativistic jets filled with ultrarelativistic pair plasma are very successful in explaining the broadband radiation of gamma-ray blazars. Assuming that the initial injection and cooling of ultrarelativistic pair plasma in an AGN jet has occurred, producing the observed high-energy gamma...

  15. A Separable Pairing Force in Nuclear Matter

    Institute of Scientific and Technical Information of China (English)

    TIAN Yuan; MA Zhong-Yu

    2006-01-01

    The method introduced by Duguet is adopted to derive a separable form of the pairing interaction in the 1 S0channel from a bare or an effective nucleon-nucleon (NN) interaction in nuclear matter. With this approach the separable pairing interaction reproduces the pairing properties provided by its corresponding NN interaction. In this work, separable forms of pairing interactions in the 1 S0 channel for the bare NN interaction, Bonn potential and the Gogny effective interaction are obtained. It is found that the separable force of the Gogny effective interaction in the 1 S0 channel has a clear link with the bare NN interaction. With such a simple separable form pairing properties provided by the Gogny force in nuclear matter can be reproduced.

  16. SRTM Stereo Pair: Fiji Islands

    Science.gov (United States)

    2000-01-01

    image pair and viewing them with a stereoscope. When stereoscopically merged, the result is a vertically exaggerated view of the Earth's surface in its full three dimensions.This image was acquired by SRTM aboard the Space Shuttle Endeavour, launched on February 11, 2000. SRTM used the same radar instrument that comprised the Spaceborne Imaging Radar-C/X-Band Synthetic Aperture Radar (SIR-C/X-SAR) that flew twice on the Space Shuttle Endeavour in 1994. SRTM was designed to collect three-dimensional measurements of the Earth's surface. To collect the 3-D data, engineers added a 60-meter-long (about 200 feet) mast, installed additional C-band and X-band antennas, and improved tracking and navigation devices. The mission is a cooperative project between the National Aeronautics and Space Administration (NASA), the National Imagery and Mapping Agency (NIMA) of the U.S. Department of Defense (DoD), and the German and Italian space agencies. It is managed by NASA's Jet Propulsion Laboratory, Pasadena, CA, for NASA's Earth Science Enterprise, Washington, DC.Size: 192 km (119 miles) x 142 km (88 miles) Location: 17.8 deg. South lat., 178.0 deg. East lon. Orientation: North at top Date Acquired: February 19, 2000 Image: NASA/JPL/NIMA

  17. Somatic pairing of chromosome 19 in renal oncocytoma is associated with deregulated EGLN2-mediated [corrected] oxygen-sensing response.

    Directory of Open Access Journals (Sweden)

    Julie M Koeman

    Full Text Available Chromosomal abnormalities, such as structural and numerical abnormalities, are a common occurrence in cancer. The close association of homologous chromosomes during interphase, a phenomenon termed somatic chromosome pairing, has been observed in cancerous cells, but the functional consequences of somatic pairing have not been established. Gene expression profiling studies revealed that somatic pairing of chromosome 19 is a recurrent chromosomal abnormality in renal oncocytoma, a neoplasia of the adult kidney. Somatic pairing was associated with significant disruption of gene expression within the paired regions and resulted in the deregulation of the prolyl-hydroxylase EGLN2 [corrected] a key protein that regulates the oxygen-dependent degradation of hypoxia-inducible factor (HIF. Overexpression of EGLN2 [corrected] in renal oncocytoma increased ubiquitin-mediated destruction of HIF and concomitantly suppressed the expression of several HIF-target genes, including the pro-death BNIP3L gene. The transcriptional changes that are associated with somatic pairing of chromosome 19 mimic the transcriptional changes that occur following DNA amplification. Therefore, in addition to numerical and structural chromosomal abnormalities, alterations in chromosomal spatial dynamics should be considered as genomic events that are associated with tumorigenesis. The identification of EGLN2 as a significantly deregulated gene that maps within the paired chromosome region directly implicates defects in the oxygen-sensing network to the biology of renal oncocytoma.

  18. Modelling prokaryote gene content

    Directory of Open Access Journals (Sweden)

    Edward Susko

    2006-01-01

    Full Text Available The patchy distribution of genes across the prokaryotes may be caused by multiple gene losses or lateral transfer. Probabilistic models of gene gain and loss are needed to distinguish between these possibilities. Existing models allow only single genes to be gained and lost, despite the empirical evidence for multi-gene events. We compare birth-death models (currently the only widely-used models, in which only one gene can be gained or lost at a time to blocks models (allowing gain and loss of multiple genes within a family. We analyze two pairs of genomes: two E. coli strains, and the distantly-related Archaeoglobus fulgidus (archaea and Bacillus subtilis (gram positive bacteria. Blocks models describe the data much better than birth-death models. Our models suggest that lateral transfers of multiple genes from the same family are rare (although transfers of single genes are probably common. For both pairs, the estimated median time that a gene will remain in the genome is not much greater than the time separating the common ancestors of the archaea and bacteria. Deep phylogenetic reconstruction from sequence data will therefore depend on choosing genes likely to remain in the genome for a long time. Phylogenies based on the blocks model are more biologically plausible than phylogenies based on the birth-death model.

  19. String pair production in non homogeneous backgrounds

    Science.gov (United States)

    Bolognesi, S.; Rabinovici, E.; Tallarita, G.

    2016-04-01

    We consider string pair production in non homogeneous electric backgrounds. We study several particular configurations which can be addressed with the Euclidean world-sheet instanton technique, the analogue of the world-line instanton for particles. In the first case the string is suspended between two D-branes in flat space-time, in the second case the string lives in AdS and terminates on one D-brane (this realizes the holographic Schwinger effect). In some regions of parameter space the result is well approximated by the known analytical formulas, either the particle pair production in non-homogeneous background or the string pair production in homogeneous background. In other cases we see effects which are intrinsically stringy and related to the non-homogeneity of the background. The pair production is enhanced already for particles in time dependent electric field backgrounds. The string nature enhances this even further. For spacial varying electrical background fields the string pair production is less suppressed than the rate of particle pair production. We discuss in some detail how the critical field is affected by the non-homogeneity, for both time and space dependent electric field backgrouds. We also comment on what could be an interesting new prediction for the small field limit. The third case we consider is pair production in holographic confining backgrounds with homogeneous and non-homogeneous fields.

  20. P-wave Cooper pair splitting

    Directory of Open Access Journals (Sweden)

    Henning Soller

    2012-07-01

    Full Text Available Background: Splitting of Cooper pairs has recently been realized experimentally for s-wave Cooper pairs. A split Cooper pair represents an entangled two-electron pair state, which has possible application in on-chip quantum computation. Likewise the spin-activity of interfaces in nanoscale tunnel junctions has been investigated theoretically and experimentally in recent years. However, the possible implications of spin-active interfaces in Cooper pair splitters so far have not been investigated.Results: We analyze the current and the cross correlation of currents in a superconductor–ferromagnet beam splitter, including spin-active scattering. Using the Hamiltonian formalism, we calculate the cumulant-generating function of charge transfer. As a first step, we discuss characteristics of the conductance for crossed Andreev reflection in superconductor–ferromagnet beam splitters with s-wave and p-wave superconductors and no spin-active scattering. In a second step, we consider spin-active scattering and show how to realize p-wave splitting using only an s-wave superconductor, through the process of spin-flipped crossed Andreev reflection. We present results for the conductance and cross correlations.Conclusion: Spin-activity of interfaces in Cooper pair splitters allows for new features in ordinary s-wave Cooper pair splitters, that can otherwise only be realized by using p-wave superconductors. In particular, it provides access to Bell states that are different from the typical spin singlet state.

  1. English for au pairs the au pair's guide to learning English

    CERN Document Server

    Curtis, Lucy

    2014-01-01

    English for Au Pairs has interlinked stories about a group of au pairs new to England. Marta, an 18-year-old from Poland arrives in the UK to work as an au pair. Throughout her year-long stay she has many different experiences - some bad, some good - but with the support of her host family she finds new friends and improves her English. English for Au Pairs offers insight into the joys and difficulties of being an au pair while at the same time reinforcing English language learning through grammar explanations and exercises.

  2. Development of artificial nucleic acid that recognizes a CG base pair in triplex DNA formation.

    Science.gov (United States)

    Hari, Yoshiyuki

    2013-01-01

    An oligonucleotide that can form a triplex with double-stranded DNA is called a triplex-forming oligonucleotide (TFO). TFOs have gained considerable attention because of their potential as gene targeting tools. However, triplex DNA formation involves inherent problems for practical use. The most important problem is that natural nucleotides in TFO do not have sufficient affinity and base pair-selectivity to pyrimidine-purine base pair, like a CG or TA base pair, within dsDNA. This suggests that dsDNA region including a CG or TA base pair cannot be targeted. Therefore, artificial nucleotides, especially with non-natural nucleobases, capable of direct recognition of a CG or TA base pair via hydrogen bond formation have been developed; however, nucleotides with better selectivity and stronger affinity are necessary for implementing this dsDNA-targeting technology using TFOs. Under such a background, we considered that facile and efficient synthesis of various nucleobase derivatives in TFOs would be useful for finding an ideal nucleobase for recognition of a CG or TA base pair because detailed and rational exploration of nucleobase structures is facilitated. Recently, to develop a nucleobase recognizing a CG base pair, we have used post-elongation modification, i.e., modification after oligonucleotide synthesis, for the facile synthesis of nucleobase derivatives. This review mainly summarizes our recent findings on the development of artificial nucleobases and nucleotides for recognition of a CG base pair in triplexes formed between dsDNA and TFOs. PMID:24189561

  3. Becoming independent through au pair migration

    DEFF Research Database (Denmark)

    Dalgas, Karina Märcher

    2015-01-01

    . This article argues that, despite this critique, au pairing does play an important formative role for young Filipinas because it opens up for experiences abroad that enable them to be recognised as independent adults in Philippine society. Rather than autonomy, however, au pairs define their independence...... in terms of their capacity to assume responsibility for others, thereby achieving a position of social respect. Based on ethnographic fieldwork in Denmark and the Philippines, this article explores how young Filipinas use the social, economic, and cultural resources they gain from their au pair stay abroad...

  4. Implementation of Cryptosystems Based on Tate Pairing

    Institute of Scientific and Technical Information of China (English)

    Lei Hu; Jun-Wu Dong; Ding-Yi Pei

    2005-01-01

    Tate pairings over elliptic curves are important in cryptography since they can be used to construct efficient identity-based cryptosystems, and their implementation dominantly determines the efficiencies of the cryptosystems. In this paper, the implementation of a cryptosystem is provided based on the Tate pairing over a supersingular elliptic curve of MOV degree 3. The implementation is primarily designed to re-use low-level codes developed in implementation of usual elliptic curve cryptosystems. The paper studies how to construct the underlying ground field and its extension to accelerate the finite field arithmetic, and presents a technique to speedup the time-consuming powering in the Tate pairing algorithm.

  5. Categorical Pairs and the Indicative Shift

    OpenAIRE

    Kauffman, Louis H.

    2011-01-01

    This paper introduces the notion of a categorical pair, a pair of categories (C,C') such that every morphism in C is an object in C'. Categorical pairs are precursors to 2-categories. Arrows in C' can express relationships among the morphisms of C. In particular we show that by using a model of the linguistic process of naming, we can ensure that every morphism in C has an indirect self-reference of the form a -----> Fa where this arrow occurs in the category C'. This result is shown to gener...

  6. Pair Creation at Large Inherent Angles

    Energy Technology Data Exchange (ETDEWEB)

    Chen, P.; Tauchi, T.; Schroeder, D.V.; /SLAC

    2007-04-25

    In the next-generation linear colliders, the low-energy e{sup +}e{sup -} pairs created during the collision of high-energy e{sup +}e{sup -} beams would cause potential deleterious background problems to the detectors. At low collider energies, the pairs are made essentially by the incoherent process, where the pair is created by the interaction of beamstrahlung photons on the individual particles in the oncoming beam. This problem was first identified by Zolotarev, et al[1]. At energies where the beamstrahlung parameter {Upsilon} lies approximately in the range 0.6 {approx}< {Upsilon} {approx}< 100, pair creation from the beamstrahlung photons is dominated by a coherent process, first noted by Chen[2]. The seriousness of this pair creation problem lies in the transverse momenta that the pair particles carry when leaving the interaction point (IP) with large angles. One source of transverse momentum is from the kick by the field of the oncoming beam which results in an outcoming angle {theta} {proportional_to} 1/{radical}x, where x is the fractional energy of the particle relative to the initial beam particle energy[2,3]. As was shown in Ref. 131, there in fact exists an energy threshold for the coherent pairs, where x{sub th} {approx}> 1/2{Upsilon}. Thus within a tolerable exiting angle, there exists an upper limit for {Upsilon} where all coherent pairs would leave the detector through the exhaust port[4]. A somewhat different analysis has been done by Schroeder[5]. In the next generation of linear colliders, as it occurs, the coherent pairs can be exponentially suppressed[2] by properly choosing the {Upsilon}({approx}< 0.6). When this is achieved, the incoherent pairs becomes dominant. Since the central issue is the transverse momentum for particles with large angles, we notice that there is another source for it. Namely, when the pair particles are created at low energies, the intrinsic angles of these pairs when produced may already be large. This issue was

  7. Implementation of New Pairing Technique for Studying the Effectiveness of Pairs on Persona and Programming

    Directory of Open Access Journals (Sweden)

    HARSIMARJEET KHURANA

    2011-01-01

    Full Text Available This paper reports on a study in which persona for the category of paired and solo students were compared on the parameter like program clarity, presentation, satisfaction level and confidence level, also the effectiveness of pairs in a JAVA programming language and the impact of pairs on each other. In this study same programs were given to all the category of paired and solo students. Finding reported in this paper are that pairing students were more likely to turn in working programs, and these programs were correctly implemented with more required features as compared to solo students. It has been observed that pairing of intelligent, average and poor with themselves has not shown significant differences but we have seen significant differences with combination of pairs.

  8. A Pair Polarimeter for High Energy Photons

    Science.gov (United States)

    Tedeschi, David; Wojtsekhowski, B.; Abbott, D.; Vlahovic, B.; Hotta, T.; Kohri, H.; Matsumura, T.; Mibe, T.; Nakano, T.; Yurita, T.; Zegers, R.; Khandaker, M.; Feldman, G.; O'Rielly, G. V.; Wood, M.; Asai, G.; Rudge, A.; Weilhammer, P.

    2001-10-01

    The physics program at the Thomas Jefferson National Accelerator Facility includes fundamental experiments with polarized photon beams in the GeV energy range. To measure the degree of photon polarization, a photon polarimeter based on the detection of e^+e^- pairs has been developed for use in Hall B and was recently tested at the LEPS facility at SPring-8 in Japan. The use of silicon micro-strip detectors allows for the first time the measurement of the angle correlation in electron-positron pair production by high energy photons incident on an amorphous converter. Theoretical calculations of the pair production process show an asymmetry σ_allel/σ_⊥ ~ 1.7 in a wide range of photon energies. Experimental results from the measurement of the pair asymmetry using 2 GeV photons from the SPring-8 facility will be presented.

  9. Pairing properties of realistic effective interactions

    Directory of Open Access Journals (Sweden)

    Gargano A.

    2016-01-01

    Full Text Available We investigate the pairing properties of an effective shell-model interaction defined within a model space outside 132Sn and derived by means of perturbation theory from the CD-Bonn free nucleon-nucleon potential. It turns out that the neutron pairing component of the effective interaction is significantly weaker than the proton one, which accounts for the large pairing gap difference observed in the two-valence identical particle nuclei 134Sn and 134Te. The role of the contribution arising from one particle-one hole excitations in determining the pairing force is discussed and its microscopic structure is also analyzed in terms of the multipole decomposition.

  10. Robustness of quantum critical pairing against disorder

    Science.gov (United States)

    Kang, Jian; Fernandes, Rafael M.

    2016-06-01

    The remarkable robustness of high-temperature superconductors against disorder remains a controversial obstacle towards the elucidation of their pairing state. Indeed, experiments report a weak suppression rate of the transition temperature Tc with disorder, significantly smaller than the universal value predicted by extensions of the conventional theory of dirty superconductors. However, in many high-Tc compounds, superconductivity appears near a putative magnetic quantum critical point, suggesting that quantum fluctuations, which suppress coherent electronic spectral weight, may also promote unconventional pairing. Here we investigate theoretically the impact of disorder on such a quantum critical pairing state, considering the coupling of impurities both to the low-energy electronic states and to the pairing interaction itself. We find a significant reduction in the suppression rate of Tc with disorder near the magnetic quantum critical point, shedding new light on the nature of unconventional superconductivity in correlated materials.

  11. Comments on Coulomb pairing in aromatic hydrocarbons

    CERN Document Server

    Huber, D L

    2013-01-01

    Recently reported anomalies in the double-photonionization spectra of aromatic molecules such as benzene, naphthalene, anthracene and coronene are attributed to Coulomb-pair resonances of pi electrons.

  12. Four square mile survey pair count instructions

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — This standard operating procedure (SOP) provides guidance for conducting bird pair count measurements on wetlands for the HAPETs Four-Square-Mile survey. This set...

  13. Z-related pairs in microtonal systems

    NARCIS (Netherlands)

    Althuis, T.A.; Göbel, F.

    2000-01-01

    Various infinite families of Z-related pairs in microtonal systems are presented. Soderberg's dual inversion is compared to a more special transformation, the one-pitch shift. The material is illustrated by several examples.

  14. Large amplitude pairing fluctuations in atomic nuclei

    CERN Document Server

    Vaquero, Nuria López; Rodríguez, Tomás R

    2013-01-01

    Pairing fluctuations are self-consistently incorporated on the same footing as the quadrupole deformations in present state of the art calculations including particle number and angular momentum conservation as well as configuration mixing. The approach is complemented by the use of the finite range density dependent Gogny force which, with a unique source for the particle-hole and particle-particle interactions, guarantees a self-consistent interplay in both channels. We have applied our formalism to study the role of the pairing degree of freedom in the description of the most relevant observables like spectra, transition probabilities, separation energies, etc. We find that the inclusion of pairing fluctuations mostly affects the description of excited states, depending on the excitation energy and the angular momentum. $E0$ transition probabilities experiment rather big changes while $E2$'s are less affected. Genuine pairing vibrations are thoroughly studied with the conclusion that deformations strongly ...

  15. Pairing vibrations in semimagic even nuclei

    International Nuclear Information System (INIS)

    The shifts in the energies of pairing vibrations due to the presence of valence nucleons are described in simple terms. Calculations are reported for the Z = 50 isotopes and N = 82 isotones and compared with experiment

  16. Turbulent pair dispersion of inertial particles

    OpenAIRE

    Bec, J; Biferale, L.; Lanotte, A.S.; Scagliarini, A; Toschi, F.

    2009-01-01

    The relative dispersion of pairs of inertial particles in incompressible, homogeneous, and isotropic turbulence is studied by means of direct numerical simulations at two values of the Taylor-scale Reynolds number $Re_{\\lambda} \\sim 200$ and 400. The evolution of both heavy and light particle pairs is analysed at varying the particle Stokes number and the fluid-to-particle density ratio. For heavy particles, it is found that turbulent dispersion is schematically governed by two temporal regim...

  17. On the analysis of phylogenetically paired designs

    OpenAIRE

    Funk, Jennifer L.; Rakovski, Cyril S; Macpherson, J Michael

    2015-01-01

    As phylogenetically controlled experimental designs become increasingly common in ecology, the need arises for a standardized statistical treatment of these datasets. Phylogenetically paired designs circumvent the need for resolved phylogenies and have been used to compare species groups, particularly in the areas of invasion biology and adaptation. Despite the widespread use of this approach, the statistical analysis of paired designs has not been critically evaluated. We propose a mixed mod...

  18. Arithmetic Operators for Pairing-Based Cryptography

    OpenAIRE

    Beuchat, Jean-Luc; Brisebarre, Nicolas; Detrey, Jérémie; Okamoto, Eiji

    2007-01-01

    Since their introduction in constructive cryptographic applications, pairings over (hyper)elliptic curves are at the heart of an ever increasing number of protocols. Software implementations being rather slow, the study of hardware architectures became an active research area. In this paper, we first study an accelerator for the eta_T pairing over F_3[x]/(x^97 + x^12 + 2). Our architecture is based on a unified arithmetic operator which performs addition, multiplication, and cubing over F_3^9...

  19. Spontaneous formation of inert oscillator pairs

    Energy Technology Data Exchange (ETDEWEB)

    Tsygankov, Denis; Wiesenfeld, Kurt

    2004-05-03

    We describe a peculiar type of spontaneous synchronization in a transmission line studded with nonlinear oscillators. After a transient period of complicated interactions, the elements form strongly synchronized pairs with interactions between these pairs virtually nil. The creation of these 'dynamical dimers' appears to stem from the coupling intrinsic to transmission lines rather than any specific property of the nonlinear oscillators.

  20. Pairs trading profitability and style investing

    OpenAIRE

    Franco, Sara das Neves

    2014-01-01

    This dissertation studies the performance of the pairs trading strategy in the US stock market between 1962 and 2013. We find that this strategy remains profitable up to the current days, though these profits have been gradually falling. We show that investors are able to outperform the pure statistical arbitrage strategy, if they restrict the pairs matching to same-industry stocks, as they benefit from permanent links. Foremost, we find that industry, size, momentum and volatility style inve...

  1. Rootless pairs of $EE_8$-lattices

    OpenAIRE

    Griess, Jr., Robert L.; lam, Ching Hung

    2008-01-01

    We describe a classification of pairs $M, N$ of lattices isometric to $EE_8:=\\sqrt 2 E_8$ such that the lattice $M + N$ is integral and rootless and such that the dihedral group associated to them has order at most 12. It turns out that most of these pairs may be embedded in the Leech lattice. Complete proofs will appear in another article. This theory of integral lattices has connections to vertex operator algebra theory and moonshine.

  2. Migration of helium-pair in metals

    Science.gov (United States)

    Cao, J. L.; Geng, W. T.

    2016-09-01

    We have carried out a first-principles density functional theory investigation into the migration of both a single interstitial He and an interstitial He-pair in Fe, Mo, W, Cu, Pd, and Pt. We find the migration trajectories and barriers are determined predominantly by low-energy He-pair configurations which depend mainly on the energy state of a single He in different interstices. The migration barrier for a He-pair in bcc metals is always slightly higher than for a single He. Configurations of a He-pair in fcc metals are very complicated, due to the existence of interstitial sites with nearly identical energy for a single He. The migration barrier for a He-pair is slightly lower than (in Cu), or similar to (in Pd and Pt) a single He. The collective migrations of a He-pair are ensured by strong Hesbnd He interactions with strength-versus-distance forms resembling chemical bonds and can be described with Morse potentials.

  3. Discovering implicit entity relation with the gene-citation-gene network.

    Science.gov (United States)

    Song, Min; Han, Nam-Gi; Kim, Yong-Hwan; Ding, Ying; Chambers, Tamy

    2013-01-01

    In this paper, we apply the entitymetrics model to our constructed Gene-Citation-Gene (GCG) network. Based on the premise there is a hidden, but plausible, relationship between an entity in one article and an entity in its citing article, we constructed a GCG network of gene pairs implicitly connected through citation. We compare the performance of this GCG network to a gene-gene (GG) network constructed over the same corpus but which uses gene pairs explicitly connected through traditional co-occurrence. Using 331,411 MEDLINE abstracts collected from 18,323 seed articles and their references, we identify 25 gene pairs. A comparison of these pairs with interactions found in BioGRID reveal that 96% of the gene pairs in the GCG network have known interactions. We measure network performance using degree, weighted degree, closeness, betweenness centrality and PageRank. Combining all measures, we find the GCG network has more gene pairs, but a lower matching rate than the GG network. However, combining top ranked genes in both networks produces a matching rate of 35.53%. By visualizing both the GG and GCG networks, we find that cancer is the most dominant disease associated with the genes in both networks. Overall, the study indicates that the GCG network can be useful for detecting gene interaction in an implicit manner. PMID:24358368

  4. Discovering implicit entity relation with the gene-citation-gene network.

    Directory of Open Access Journals (Sweden)

    Min Song

    Full Text Available In this paper, we apply the entitymetrics model to our constructed Gene-Citation-Gene (GCG network. Based on the premise there is a hidden, but plausible, relationship between an entity in one article and an entity in its citing article, we constructed a GCG network of gene pairs implicitly connected through citation. We compare the performance of this GCG network to a gene-gene (GG network constructed over the same corpus but which uses gene pairs explicitly connected through traditional co-occurrence. Using 331,411 MEDLINE abstracts collected from 18,323 seed articles and their references, we identify 25 gene pairs. A comparison of these pairs with interactions found in BioGRID reveal that 96% of the gene pairs in the GCG network have known interactions. We measure network performance using degree, weighted degree, closeness, betweenness centrality and PageRank. Combining all measures, we find the GCG network has more gene pairs, but a lower matching rate than the GG network. However, combining top ranked genes in both networks produces a matching rate of 35.53%. By visualizing both the GG and GCG networks, we find that cancer is the most dominant disease associated with the genes in both networks. Overall, the study indicates that the GCG network can be useful for detecting gene interaction in an implicit manner.

  5. Genes and Gene Therapy

    Science.gov (United States)

    ... correctly, a child can have a genetic disorder. Gene therapy is an experimental technique that uses genes to ... or prevent disease. The most common form of gene therapy involves inserting a normal gene to replace an ...

  6. String pair production in non homogeneous backgrounds

    CERN Document Server

    Bolognesi, Stefano; Tallarita, Gianni

    2016-01-01

    We consider string pair production in non homogeneous electric backgrounds. We study several particular configurations which can be addressed with the Euclidean world-sheet instanton technique, the analogue of the world-line instanton for particles. In the first case the string is suspended between two D-branes in flat space-time, in the second case the string lives in AdS and terminates on one D-brane (this realizes the holographic Schwinger effect). In some regions of parameter space the result is well approximated by the known analytical formulas, either the particle pair production in non-homogeneous background or the string pair production in homogeneous background. In other cases we see effects which are intrinsically stringy and related to the non-homogeneity of the background. The pair production is enhanced already for particles in time dependent electric field backgrounds. The string nature enhances this even further. For spacial varying electrical background fields the string pair production is les...

  7. Pairing instabilities of Dirac composite fermions

    Science.gov (United States)

    Milovanović, M. V.; Ćirić, M. Dimitrijević; Juričić, V.

    2016-09-01

    Recently, a Dirac (particle-hole symmetric) description of composite fermions in the half-filled Landau level (LL) was proposed [D. T. Son, Phys. Rev. X 5, 031027 (2015), 10.1103/PhysRevX.5.031027], and we study its possible consequences on BCS (Cooper) pairing of composite fermions (CFs). One of the main consequences is the existence of anisotropic states in single-layer and bilayer systems, which was previously suggested in Jeong and Park [J. S. Jeong and K. Park, Phys. Rev. B 91, 195119 (2015), 10.1103/PhysRevB.91.195119]. We argue that in the half-filled LL in the single-layer case the gapped states may sustain anisotropy, because isotropic pairings may coexist with anisotropic ones. Furthermore, anisotropic pairings with the addition of a particle-hole symmetry-breaking mass term may evolve into rotationally symmetric states, i.e., Pfaffian states of Halperin-Lee-Read (HLR) ordinary CFs. On the basis of the Dirac formalism, we argue that in the quantum Hall bilayer at total filling factor 1, with decreasing distance between the layers, weak pairing of p -wave paired CFs is gradually transformed from Dirac to ordinary, HLR-like, with a concomitant decrease in the CF number. Global characterization of low-energy spectra based on the Dirac CFs agrees well with previous calculations performed by exact diagonalization on a torus. Finally, we discuss features of the Dirac formalism when applied in this context.

  8. Pairing and specific heat in hot nuclei

    CERN Document Server

    Gambacurta, Danilo; Sandulescu, Nicu

    2013-01-01

    The thermodynamics of pairing phase-transition in nuclei is studied in the canonical ensemble and treating the pairing correlations in a finite-temperature variation after projection BCS approach (FT-VAP). Due to the restoration of particle number conservation, the pairing gap and the specific heat calculated in the FT-VAP approach vary smoothly with the temperature, indicating a gradual transition from the superfluid to the normal phase, as expected in finite systems. We have checked that the predictions of the FT-VAP approach are very accurate when compared to the results obtained by an exact diagonalization of the pairing Hamiltonian. The influence of pairing correlations on specific heat is analysed for the isotopes $^{161,162}$Dy and $^{171,172}$Yb. It is shown that the FT-VAP approach, applied with a level density provided by mean field calculations and supplemented, at high energies, by the level density of the back-shifted Fermi gas model, can approximate reasonably well the main properties of specifi...

  9. Cooper-pair splitter: towards an efficient source of spin-entangled EPR pairs

    Science.gov (United States)

    Schonenberger, Christian

    2011-03-01

    In quantum mechanics the properties of two and more particles can be entangled. In basic science pairs of entangled particles, so called Einstein-Podolsky-Rosen (EPR) pairs, play a special role as toy objects for fundamental studies. They provide such things as ``spooky interaction at distance,'' but they also enable secure encoding and teleportation and are thus important for applications in quantum information technology. Whereas EPR pairs of photons can be generated by parametric down conversion (PDC) in a crystal, a similar source for EPR pairs of electrons does not exists yet. In several theory papers, it has been suggested to use a superconductor for this purpose. The superconducting ground state is formed by a condensate of Cooper-pairs which are electron pairs in a spin-singlet state. Since there are many Cooper pairs in a metallic superconductor like Al, the main tasks are to extract Cooper pairs one by one and to split them into different arms. A controlled and efficient splitting is possible if one makes use of Coulomb interaction. This has recently be demonstrated by two groups [2-4] using hybrid quantum-dot devices with both superconducting and normal metal contacts. In the present talk, I will discuss the Cooper-pair splitter results from the Basel-Budapest-Copenhagen team and compare with the other experiments. As an outlook we discuss approaches that aim at entanglement detection. The Cooper pair splitter holds great promises because very large splitting efficiencies approaching 100% and large pair current rates appear feasible. This work has been done by L. Hofstetter, S. Csonka, A. Geresdi, M. Aagesen, J. Nygard and C. Schönenberger

  10. A 3-base pair deletion, c.9711_9713del, in DMD results in intellectual disability without muscular dystrophy

    NARCIS (Netherlands)

    de Brouwer, Arjan P. M.; Nabuurs, Sander B.; Verhaart, Ingrid E. C.; Oudakker, Astrid R.; Hordijk, Roel; Yntema, Helger G.; Hordijk-Hos, Jannet M.; Voesenek, Krysta; de Vries, Bert B. A.; van Essen, Ton; Chen, Wei; Hu, Hao; Chelly, Jamel; den Dunnen, Johan T.; Kalscheuer, Vera M.; Aartsma-Rus, Annemieke M.; Hamel, Ben C. J.; van Bokhoven, Hans; Kleefstra, Tjitske

    2014-01-01

    We have identified a deletion of 3 base pairs in the dystrophin gene (DMD), c.9711_9713del, in a family with nonspecific X-linked intellectual disability (ID) by sequencing of the exons of 86 known X-linked ID genes. This in-frame deletion results in the deletion of a single-amino-acid residue, Leu3

  11. An evaluation of the genetic-matched pair study design using genome-wide SNP data from the European population

    DEFF Research Database (Denmark)

    Lu, Timothy Tehua; Lao, Oscar; Nothnagel, Michael;

    2009-01-01

    Genetic matching potentially provides a means to alleviate the effects of incomplete Mendelian randomization in population-based gene-disease association studies. We therefore evaluated the genetic-matched pair study design on the basis of genome-wide SNP data (309,790 markers; Affymetrix Gene...

  12. Theoretical analysis of novel fiber grating pair

    Science.gov (United States)

    Wang, Liao; Jia, Hongzhi; Fang, Liang; You, Bei

    2016-06-01

    A novel fiber grating pair that consists of a conventional long-period fiber grating and a fiber Bragg cladding grating (FBCG) is proposed. The FBCG is a new type of fiber grating in which refractive index modulation is formed in the cladding. Through the coupled-mode theory, we accurately calculate the coupling coefficients between modes supported in the fibers. And some other mode coupling features in the fiber cladding gratings are analyzed in detail. The calculation of the modes involved in this paper is based on a model of three-layer step-index fiber geometry. Then, we have investigated the sensitivity characteristics for variation of the modulation strengths of the fiber Bragg cladding gratings' resonance peaks and the long-period cladding gratings' (LPCGs) dual resonant peaks. Finally, the modulation strength sensitivity of the grating pair's three resonant peaks is demonstrated, and the results indicate that these grating pairs may find potential applications in optical fiber sensing.

  13. Pair Creation in the Pulsar Magnetosphere

    CERN Document Server

    Eilek, J A

    2002-01-01

    We present numerical simulations of the electron-positron plasma creation process in a simple neutron star magnetosphere. We have developed a set of cascade `kernels', which represent the endpoint of the pair cascades resulting from monoenergetic photon seeds. We explore two popular models by convolving these kernels with the seed photon distributions produced by curvature radiation and by inverse Compton scattering. We find that the pair plasma in either case is well-described in its rest frame by a relativistic Maxwellian distribution with temperature near mc^2/k_B. We present cascade multiplicities and efficiencies for a range of seed particle energies and stellar magnetic fields. We find that the efficiencies and multiplicities of pair creation are often lower than has been assumed in previous work.

  14. Thermodynamics of pairing transition in hot nuclei

    CERN Document Server

    Liu, Lang; Zhao, Peng-Wei

    2014-01-01

    The pairing correlations in hot nuclei $^{162}$Dy are investigated in terms of the thermodynamical properties by covariant density functional theory. The heat capacities $C_V$ are evaluated in the canonical ensemble theory and the paring correlations are treated by a shell-model-like approach, in which the particle number is conserved exactly. A S-shaped heat capacity curve, which agrees qualitatively with the experimental data, has been obtained and analyzed in details. It is found that the one-pair-broken states play crucial roles in the appearance of the S shape of the heat capacity curve. Moreover, due to the effect of the particle-number conservation, the pairing gap varies smoothly with the temperature, which indicates a gradual transition from the superfluid to the normal state.

  15. An inverse problem for Schwinger pair production

    CERN Document Server

    Hebenstreit, Florian

    2016-01-01

    The production of electron-positron pairs in time-dependent electric fields (Schwinger mechanism) depends non-linearly on the applied field profile. Accordingly, the resulting momentum spectrum is extremely sensitive to small variations of the field parameters. Owing to this non-linear dependence it is so far unpredictable how to choose a field configuration such that a predetermined momentum distribution is generated. We show that quantum kinetic theory along with optimal control theory can be used to approximately solve this inverse problem for Schwinger pair production. We exemplify this by studying the superposition of a small number of harmonic components resulting in predetermined signatures in the asymptotic momentum spectrum. In the long run, our results could facilitate the observation of this yet unobserved pair production mechanism in quantum electrodynamics by providing suggestions for tailored field configurations.

  16. Holographic EPR Pairs, Wormholes and Radiation

    CERN Document Server

    Chernicoff, Mariano; Pedraza, Juan F

    2013-01-01

    As evidence for the ER=EPR conjecture, it has recently been observed that the string that is holographically dual to an entangled quark-antiquark pair separating with (asymptotically) uniform acceleration has a wormhole on its worldsheet. We point out that a two-sided horizon and a wormhole actually appear for much more generic quark-antiquark trajectories, which is consistent with the fact that the members of an EPR pair need not be permanently out of causal contact. The feature that determines whether the causal structure of the string worldsheet is trivial or not turns out to be the emission of gluonic radiation by the dual quark and antiquark. In the strongly-coupled gauge theory, it is only when radiation is emitted that one obtains an unambiguous separation of the pair into entangled subsystems, and this is what is reflected on the gravity side by the existence of the worldsheet horizon.

  17. Narrowband Photon Pair Source for Quantum Networks

    CERN Document Server

    Monteiro, F; Sanguinetti, B; Zbinden, H; Thew, R T

    2013-01-01

    We demonstrate a compact photon pair source based on a periodically poled lithium niobate nonlinear crystal in a cavity. The cavity parameters are chosen such that the emitted photon pair modes can be matched in the region of telecom ultra dense wavelength division multiplexing (U-DWDM) channel spacings. This approach provides efficient, low-loss, mode selection that is compatible with standard telecommunication networks. Photons with a coherence time of 8.6 ns (116 MHz) are produced and their purity is demonstrated. A source brightness of 134 pairs(s.mW.MHz)$^{-1}$ is reported. The high level of purity and compatibility with standard telecom networks is of great importance for complex quantum communication networks.

  18. Complex conjugate pairs in stationary Sturmians

    International Nuclear Information System (INIS)

    Sturmian expansions enable a simply accurate separable specification of two nucleon t matrices based upon realistic two nucleon interactions. Sturmian eigenstates specified by stationary scattering boundary conditions are particularly useful in that context, and they can be calculated by solving a generalised eigenvalue equation using real and symmetric matrices. In general, the spectrum of such an equation may contain complex eigenvalues. But to each complex eigenvalues there is a corresponding conjugate partner. In studies using realistic two nucleon potentials, and in certain positive energy intervals, these complex conjugated pairs indeed appear in the Sturmian spectrum. However, it is demonstrated that it is possible to recombine the complex conjugate pairs and corresponding states into a new, (and useful) pair of real eigenvalues and eigenstates with which of effect separable expansions of the (real) two nucleon reactance matrices. 8 refs

  19. Complex conjugate pairs in stationary Sturmian eigenstates

    International Nuclear Information System (INIS)

    Sturmian eigenstates specified by stationary scattering boundary conditions are particularly useful in contexts such as forming simple separable two nucleon t matrices, and are determined via solution of generalized eigenvalue equation using real and symmetric matrices. In general, the spectrum of such an equation may contain complex eigenvalues. But to each complex eigenvalue there is a corresponding conjugate partner. In studies using realistic nucleon-nucleon potentials, and in certain positive energy intervals, these complex conjugated pairs indeed appear in the Sturmian spectrum. However, as we demonstrate herein, it is possible to recombine the complex conjugate pairs and corresponding states into a new, sign-definite pair of real quantities with which to effect separable expansions of the (real) nucleon-nucleon reactance matrices

  20. Mad-Maximized Higgs Pair Analyses

    CERN Document Server

    Kling, Felix; Schichtel, Peter

    2016-01-01

    We study Higgs pair production with a subsequent decay to a pair of photons and a pair of bottoms at the LHC. We use the log-likelihood ratio to identify the kinematic regions which either allow us to separate the di-Higgs signal from backgrounds or to determine the Higgs self-coupling. We find that both regions are separate enough to ensure that details of the background modelling will not affect the determination of the self-coupling. Assuming dominant statistical uncertainties we determine the best precision with which the Higgs self- coupling can be probed in this channel. We finally comment on the same questions at a future 100 TeV collider.

  1. Hard Photodisintegration of a Proton Pair

    CERN Document Server

    Pomerantz, I; Allada, K; Beck, A; Beck, S; Berman, B L; Boeglin, W; Camsonne, A; Canan, M; Chirapatpimol, K; Cisbani, E; Cusanno, F; De Jager, C W; Dutta, C; Garibaldi, F; Geagla, O; Gilman, R; Glister, J; Higinbotham, D W; Jiang, X; Katramatou, A T; Khrosinkova, E; Lee, B; LeRose, J J; Lindgren, R; McCullough, E; Meekins, D; Michaels, R; Moffit, B; Petratos, G G; Piasetzky, E; Qian, X; Qiang, Y; Rodriguez, I; Ron, G; Saha, A; Sarty, A J; Sawatzky, B; Schulte, E; Shneor, R; Sparveris, N; Subedi, R; Strauch, S; Sulkosky, V; Wang, Y; Wojtsekhowski, B; Yan, X; Yao, H; Zhan, X; Zheng, X

    2009-01-01

    We present the first study of high energy photodisintegration of proton-pairs through the gamma + 3He -> p+p+n channel. Photon energies from 0.8 to 4.7 GeV were used in kinematics corresponding to a proton pair with high relative momentum and a neutron nearly at rest. An s^{-11} scaling of the cross section was observed, as predicted by the constituent counting rule. The onset of the scaling is at a higher energy and the cross section is significantly lower then for pn pair photodisintegration. For photon energies below the scaling region, the scaled cross section was found to present a strong energy-dependent structure not observed in deuteron photodisintegration.

  2. The inverse problem for Schwinger pair production

    Directory of Open Access Journals (Sweden)

    F. Hebenstreit

    2016-02-01

    Full Text Available The production of electron–positron pairs in time-dependent electric fields (Schwinger mechanism depends non-linearly on the applied field profile. Accordingly, the resulting momentum spectrum is extremely sensitive to small variations of the field parameters. Owing to this non-linear dependence it is so far unpredictable how to choose a field configuration such that a predetermined momentum distribution is generated. We show that quantum kinetic theory along with optimal control theory can be used to approximately solve this inverse problem for Schwinger pair production. We exemplify this by studying the superposition of a small number of harmonic components resulting in predetermined signatures in the asymptotic momentum spectrum. In the long run, our results could facilitate the observation of this yet unobserved pair production mechanism in quantum electrodynamics by providing suggestions for tailored field configurations.

  3. Categorical Pairs and the Indicative Shift

    CERN Document Server

    Kauffman, Louis H

    2011-01-01

    This paper introduces the notion of a categorical pair, a pair of categories (C,C') such that every morphism in C is an object in C'. Categorical pairs are precursors to 2-categories. Arrows in C' can express relationships among the morphisms of C. In particular we show that by using a model of the linguistic process of naming, we can ensure that every morphism in C has an indirect self-reference of the form a -----> Fa where this arrow occurs in the category C'. This result is shown to generalize and clarify known fixed point theorems in logic and categories, and is applied to Goedel's Incompleteness Theorem, the Cantor Diagonal Process and the Lawvere Fixed Point Theorem. In particular we show that the indirect self-reference that is central to Goedel's Theorem is an instance of a general pattern here called the indicative shift.

  4. Induced Pairing Interaction in Neutron Star Matter

    Science.gov (United States)

    Lombardo, U.; Schulze, H.-J.; Zuo, W.

    2013-01-01

    The three superfluid phases supposed to occur in neutron stars are reviewed in the framework of the generalized BCS theory with the induced interaction. The structure of neutron stars characterized by beta-stable asymmetric nuclear matter in equilibrium with the gravitational force discloses new aspects of the pairing mechanism. Some of them are discussed in this report, in particular the formation in dense matter of Cooper pairs in the presence of three-body forces and the interplay between repulsive and attractive polarization effects on isospin T = 1 Cooper pairs embedded into the neutron and proton environment. Quantitative estimates of the energy gaps are reported and their sensitivity to the medium effects, i.e., interaction and polarization, is explored.

  5. Pairing and the Cooling of Neutron Stars

    CERN Document Server

    Page, Dany

    2012-01-01

    In this review, I present a brief summary of the impact of nucleon pairing at supra-nuclear densities on the cooling of neutron stars. I also describe how the recent observation of the cooling of the neutron star in the supernova remnant Cassiopeia A may provide us with the first direct evidence for the occurrence of such pairing. It also implies a size of the neutron 3P-F2 energy gap of the order of 0.1 MeV.

  6. On Thermal Comptonization in e+- Pair Plasmas

    OpenAIRE

    Ghisellini, Gabriele; Haardt, Francesco

    1994-01-01

    We study $e^{\\pm}$ pair plasmas in pair equilibrium, which emit high energy radiation by thermal Comptonization of soft photons. We find that the maximum luminosity to size ratio of the source (i.e. the compactness) depends not only on the hot plasma temperature, but also on the spectral index of the resulting Comptonized spectrum. In the observationally interesting range, sources of same compactness can be hotter if their spectrum is steeper. Instruments observing in the 50--500 keV energy r...

  7. The BCS Model for General Pair Interaction

    DEFF Research Database (Denmark)

    Hainzl, Christian; Hamza, Eman; Seiringer, Robert;

    2008-01-01

    The Bardeen-Cooper-Schrieffer (BCS) functional has recently received renewed attention as a description of fermionic gases interacting with local pairwise interactions. We present here a rigorous analysis of the BCS functional for general pair interaction potentials. For both zero and positive...... temperature, we show that the existence of a non-trivial solution of the nonlinear BCS gap equation is equivalent to the existence of a negative eigenvalue of a certain linear operator. From this we conclude the existence of a critical temperature below which the BCS pairing wave function does not vanish...

  8. Breaking of Cooper pairs in 108Pd

    Science.gov (United States)

    Rahmatinejad, A.; Kakavand, T.; Razavi, R.

    2016-04-01

    In this paper, breaking of Cooper pairs in 108Pd is investigated within the canonical ensemble framework and the BCS model. Our results show an evidence of two phase transitions, which are related to neutron and proton systems. Also, with consideration of pairing interaction, the role of neutron and proton systems in entropy, spin cutoff parameter and as a result in the moment of inertia are investigated. The results show minor role for the proton system at low temperatures and approximately equal roles for both neutron and proton systems after the critical temperature. Good agreement was observed between obtained results and the experimental data.

  9. Pairing schemes for HFB calculations of nuclei

    CERN Document Server

    Duguet, T; Bonche, P

    2005-01-01

    Several pairing schemes currently used to describe superfluid nuclei through Hartree-Fock-Bogolyubov (HFB) calculations are briefly reviewed. We put a particular emphasis on the regularization recipes used in connection with zero-range forces and on the density dependence which usually complement their definition. Regarding the chosen regularization process, the goal is not only to identify the impact it may or may not have on pairing properties of nuclei through spherical 1D HFB calculations but also to assess its tractability for systematic axial 2D and 3D mean-field and beyond-mean-field calculations.

  10. Non-locality of experimental qutrit pairs

    International Nuclear Information System (INIS)

    The insight due to John Bell that the joint behavior of individually measured entangled quantum systems cannot be explained by shared information remains a mystery to this day. We describe an experiment, and its analysis, displaying non-locality of entangled qutrit pairs. The non-locality of such systems, as compared to qubit pairs, is of particular interest since it potentially opens the door for tests of bipartite non-local behavior independent of probabilistic Bell inequalities, but of deterministic nature. This article is part of a special issue of Journal of Physics A: Mathematical and Theoretical devoted to ‘50 years of Bell’s theorem’. (paper)

  11. Comment on ``Pairing interaction and Galilei invariance''

    Science.gov (United States)

    Arias, J. M.; Gallardo, M.; Gómez-Camacho, J.

    1999-05-01

    A recent article by Dussel, Sofia, and Tonina studies the relation between Galilei invariance and dipole energy weighted sum rule (EWSR). The authors find that the pairing interaction, which is neither Galilei nor Lorentz invariant, produces big changes in the EWSR and in effective masses of the nucleons. They argue that these effects of the pairing force could be realistic. In this Comment we stress the validity of Galilei invariance to a very good approximation in this context of low-energy nuclear physics and show that the effective masses and the observed change in the EWSR for the electric dipole operator relative to its classical value are compatible with this symmetry.

  12. Pairing and realistic shell-model interactions

    OpenAIRE

    Covello, A; Gargano, A.; Kuo, T. T. S.

    2012-01-01

    This paper starts with a brief historical overview of pairing in nuclei, which fulfills the purpose of properly framing the main subject. This concerns the pairing properties of a realistic shell-model effective interaction which has proved very successful in describing nuclei around doubly magic 132Sn. We focus attention on the two nuclei 134Te and 134Sn with two valence protons and neutrons, respectively. Our study brings out the key role of one particle-one hole excitations in producing a ...

  13. Strategies for electron pair reconstruction in CBM

    International Nuclear Information System (INIS)

    Lepton pairs emitted out of the hot and dense stage of relativistic heavy ion collisions are established probes to study the electromagnetic structure of hadrons under extreme conditions. The reconstruction of low-mass vector mesons by means of their electromagnetic decay is one of the experimental goals of the planned compressed baryonic matter (CBM) experiment at the future facility FAIR. We present our strategies to reduce the combinatorial background in electron pair measurements in central Au+Au collisions at 25 AGeV with the CBM experimental setup. A special challenge of the current concept is the fact that electron identification is not provided in front of the magnetic field. (orig.)

  14. Pairing Phase Transitions of Matter under Rotation

    CERN Document Server

    Jiang, Yin

    2016-01-01

    The phases and properties of matter under global rotation have attracted much interest recently. In this paper we investigate the pairing phenomena in a system of fermions under the presence of rotation. We find that there is a generic suppression effect on pairing states with zero angular momentum. We demonstrate this effect with the chiral condensation and the color superconductivity in hot dense QCD matter as explicit examples. In the case of chiral condensation, a new phase diagram in the temperature-rotation parameter space is found, with a nontrivial critical point.

  15. Asynchronous replication and autosome-pair non-equivalence in human embryonic stem cells.

    Directory of Open Access Journals (Sweden)

    Devkanya Dutta

    Full Text Available A number of mammalian genes exhibit the unusual properties of random monoallelic expression and random asynchronous replication. Such exceptional genes include genes subject to X inactivation and autosomal genes including odorant receptors, immunoglobulins, interleukins, pheromone receptors, and p120 catenin. In differentiated cells, random asynchronous replication of interspersed autosomal genes is coordinated at the whole chromosome level, indicative of chromosome-pair non-equivalence. Here we have investigated the replication pattern of the random asynchronously replicating genes in undifferentiated human embryonic stem cells, using fluorescence in situ hybridization based assay. We show that allele-specific replication of X-linked genes and random monoallelic autosomal genes occur in human embryonic stem cells. The direction of replication is coordinated at the whole chromosome level and can cross the centromere, indicating the existence of autosome-pair non-equivalence in human embryonic stem cells. These results suggest that epigenetic mechanism(s that randomly distinguish between two parental alleles are emerging in the cells of the inner cell mass, the source of human embryonic stem cells.

  16. Extracting an entangled photon pair from collectively decohered pairs at a telecommunication wavelength.

    Science.gov (United States)

    Tsujimoto, Yoshiaki; Sugiura, Yukihiro; Ando, Makoto; Katsuse, Daisuke; Ikuta, Rikizo; Yamamoto, Takashi; Koashi, Masato; Imoto, Nobuyuki

    2015-05-18

    We experimentally demonstrated entanglement extraction scheme by using photons at the telecommunication band for optical-fiber-based quantum communications. We generated two pairs of non-degenerate polarization entangled photons at 780 nm and 1551 nm by spontaneous parametric down-conversion and distributed the two photons at 1551 nm through a collective phase damping channel which gives the same amount of random phase shift on the two photons. Through local operation and classical communication, we extracted an entangled photon pair from two phase-disturbed photon pairs. An observed fidelity of the extracted photon pair to a maximally entangled photon pair was 0.73 ± 0.07 which clearly shows the recovery of entanglement.

  17. Retardation in the atomic pair polarizability

    NARCIS (Netherlands)

    M.A.J. Michels; L.G. Suttorp

    1977-01-01

    The atomic pair polarizability for hydrogen atoms is calculated within the framework of covariant quantum electrodynamics. Retardation effects are shown to change the dependence on the interatomic separation R from R/sup -6/ to R/sup -7/ for R large compared with a characteristic wavelength of the a

  18. Quantum physics: Photons paired with phonons

    Science.gov (United States)

    Blencowe, Miles

    2016-02-01

    The force exerted by light on an object has been used to pair photons with quantum units of mechanical vibration. This paves the way for mechanical oscillators to act as interfaces between photons and other quantum systems. See Letter p.313

  19. Comparing complexities of pairs of modules

    CERN Document Server

    Dao, Hailong

    2009-01-01

    Let $R$ be a local ring and $M,N$ be finitely generated $R$-modules. The complexity of $(M,N)$, denoted by $\\cxx RMN$, measures the polynomial growth rate of the number of generators of the modules $\\Ext nRMN$. In this paper we study several basic equalities and inequalities involving complexities of different pairs of modules.

  20. Evacuation dynamics of asymmetrically coupled pedestrian pairs

    CERN Document Server

    Müller, Frank

    2016-01-01

    We propose and analyze extended floor field cellular automaton models for evacuation dynamics of inhomogeneous pedestrian pairs which are coupled by asymmetric group interactions. Such pairs consist of a leader, who mainly determines the couple's motion and a follower, who has a defined tendency to follow the leader. Examples for such pairs are mother and child or two siblings of different age. We examine the system properties and compare them to the case of a homogeneous crowd. We find a strong impact on evacuation times for the regime of strong pair coupling due to the occurrence of a clogging phenomenon. In addition we obtain a non-trivial dependence of evacuation times on the followers' coupling to the static floor field, which carries the information of the shortest way to the exit location. In particular we find that systems with fully passive followers, who are solely coupled to their leaders, show lower evacuation times than homogeneous systems where all pedestrians have an equal tendency to move towa...

  1. Spectral Similarity of Unbound Asteroid Pairs

    CERN Document Server

    Wolters, Stephen D; Christou, Apostolis; Duddy, Samuel R; Lowry, Stephen C

    2014-01-01

    Infrared spectroscopy between 0.8 and 2.5 microns has been obtained for both components of three unbound asteroid pairs, using the NASA-IRTF with the SpeX instrument. Pair primary (2110) Moore-Sitterly is classified as an S-type following the Bus-DeMeo taxonomy; the classification for secondary (44612) 1999 RP27 is ambiguous: S/Sq/Q/K/L-type. Primary (10484) Hecht and secondary (44645) 1999 RC118 are classified as V-types. IR spectra for Moore-Sitterly and Hecht are each linked with available visual photometry. The classifications for primary (88604) 2001 QH293 and (60546) 2000 EE85 are ambiguous: S/Sq/Q/K/L-type. Subtle spectral differences between them suggest the primary may have more weathered material on its surface. Dynamical integrations have constrained the ages of formation: 2110-44612 > 782 kyr; 10484-44645 = 348 (+823,-225) kyr; 88604-60546 = 925 (+842,-754) kyr. The spectral similarity of seven complete pairs is ranked in comparison with nearby background asteroids. Two pairs, 17198-229056 and 192...

  2. Anomalous Couplings in W Pair Production

    CERN Document Server

    Biebel, J

    1998-01-01

    I present a short overview over W pair production and studies of angular differential cross-sections with and without initial state radiation applying semi-analytical methods and using the Fortran program GENTLE. The influence of anomalous couplings to this process is also discussed.

  3. Sfermion Pair Production at $\\mu^{+} \\mu^{-}$ Colliders

    CERN Document Server

    Bartl, Alfred; Kraml, Sabine; Majerotto, Walter; Porod, Werner

    1998-01-01

    We discuss pair production of stops, sbottoms, staus and tau--sneutrinos at a sections and perform a detailed numerical analysis within the Minimal Supersymmetric Standard Model. In particular, we consider sfermion production near $\\sqrt{s} = m_{H^0}$ and $\\sqrt{s} = m_{A^0}$.

  4. Near-Ring Radicals and Class Pairs

    Institute of Scientific and Technical Information of China (English)

    L.Godloza; N.J.Groenewald; W.A.Olivier

    2005-01-01

    For near-ring ideal mappings p1 and p2, we investigate radical theoretical properties of and the relationship among the class pairs (p1: p2), (Sp2: Sp1) and (Rp2:Rp1). Conditions on p1 and p2 are given for a general class pair to form a radical class of various types. These types include the Plotkin and KA-radical varieties. A number of examples are shown to motivate the suitability of the theory of Hoehnke-radicals over KA-radicals when radical pairs of near-rings are studied. In particular, it is shown that (pc: P3) forms a KA-radical class, where Pc denotes the class of completely prime nearrings and P3 the class of 3-prime near-rings. This gives another near-ring generalization of the 2-primal ring concept. The theory of radical pairs are also used to show that in general the class of 3-semiprime near-rings is not the semisimple class of the 3-prime radical.

  5. Computing Hypercrossed Complex Pairings in Digital Images

    Directory of Open Access Journals (Sweden)

    Simge Öztunç

    2013-01-01

    Full Text Available We consider an additive group structure in digital images and introduce the commutator in digital images. Then we calculate the hypercrossed complex pairings which generates a normal subgroup in dimension 2 and in dimension 3 by using 8-adjacency and 26-adjacency.

  6. A Novel Approach for Collaborative Pair Programming

    Science.gov (United States)

    Goel, Sanjay; Kathuria, Vanshi

    2010-01-01

    The majority of an engineer's time in the software industry is spent working with other programmers. Agile methods of software development like eXtreme Programming strongly rely upon practices like daily meetings and pair programming. Hence, the need to learn the skill of working collaboratively is of primary importance for software developers.…

  7. The mother of all pair potentials

    DEFF Research Database (Denmark)

    Dyre, J. C.; Bacher, Andreas Kvist

    2014-01-01

    This paper presents a computer simulation study of the exponentially repulsive pair potential system. The simulations show that the system has strong virial potential energy correlations in a large part of its thermodynamic phase diagram. Consequences of this are briefly discussed; these include ...

  8. Ion Pairing in Alkali Nitrate Electrolyte Solutions.

    Science.gov (United States)

    Xie, Wen Jun; Zhang, Zhen; Gao, Yi Qin

    2016-03-10

    In this study, we investigate the thermodynamics of alkali nitrate salt solutions, especially the formation of contact ion pairs between alkali cation and nitrate anion. The ion-pairing propensity shows an order of LiNO3 law of matching water affinity" is followed by these alkali nitrate salt solutions. The spatial patterns of contact ion pairs are different in the three salt solutions studied here: Li(+) forms the contact ion pair with only one oxygen of the nitrate while Na(+) and K(+) can also be shared by two oxygens of the nitrate. In reproducing the salt activity coefficient using Kirkwood-Buff theory, we find that it is essential to include electronic polarization for Li(+) which has a high charge density. The electronic continuum correction for nonpolarizable force field significantly improves the agreement between the calculated activity coefficients and their experimental values. This approach also improves the performance of the force field on salt solubility. From these two aspects, this study suggests that electronic continuum correction can be a promising approach to force-field development for ions with high charge densities. PMID:26901167

  9. Ion Pairing in Alkali Nitrate Electrolyte Solutions.

    Science.gov (United States)

    Xie, Wen Jun; Zhang, Zhen; Gao, Yi Qin

    2016-03-10

    In this study, we investigate the thermodynamics of alkali nitrate salt solutions, especially the formation of contact ion pairs between alkali cation and nitrate anion. The ion-pairing propensity shows an order of LiNO3 activity coefficients and suggest that the empirical "law of matching water affinity" is followed by these alkali nitrate salt solutions. The spatial patterns of contact ion pairs are different in the three salt solutions studied here: Li(+) forms the contact ion pair with only one oxygen of the nitrate while Na(+) and K(+) can also be shared by two oxygens of the nitrate. In reproducing the salt activity coefficient using Kirkwood-Buff theory, we find that it is essential to include electronic polarization for Li(+) which has a high charge density. The electronic continuum correction for nonpolarizable force field significantly improves the agreement between the calculated activity coefficients and their experimental values. This approach also improves the performance of the force field on salt solubility. From these two aspects, this study suggests that electronic continuum correction can be a promising approach to force-field development for ions with high charge densities.

  10. Abstract polymer models with general pair interactions

    CERN Document Server

    Procacci, Aldo

    2007-01-01

    A convergence criterion of cluster expansion is presented in the case of an abstract polymer system with general pair interactions (i.e. not necessarily hard core or repulsive). As a concrete example, the low temperature disordered phase of the BEG model with infinite range interactions, decaying polynomially as $1/r^{d+\\lambda}$ with $\\lambda>0$, is studied.

  11. Distinguishing Z' models with polarised top pairs

    OpenAIRE

    Basso, L.; Mimasu, K.; Moretti, S.

    2012-01-01

    We study the sensitivity of top pair production at the Large Hadron Collider (LHC) to the nature of an underlying Z' boson, including full tree level standard model background effects and interferences. We demonstrate that exploiting combinations of asymmetry observables will enable one to distinguish between a selection of `benchmark' Z' models while assuming realistic final state reconstruction efficiencies and error estimates.

  12. Plasma analog of particle-pair production

    International Nuclear Information System (INIS)

    It is shown that the plasma axial shear flow instability satisfies the Klein-Gordon equation. The plasma instability is then shown to be analogous to spontaneous particle-pair production when a potential energy is present that is greater than twice the particle rest mass energy. Stability criteria can be inferred based on field theoretical conservation laws. (UK)

  13. The Lax pairs for the Holt system

    OpenAIRE

    Tsiganov, A. V.

    1998-01-01

    By using non-canonical transformation between the Holt system and the Henon-Heiles system the Lax pairs for all the integrable cases of the Holt system are constructed from the known Lax representations for the Henon-Heiles system.

  14. Building a control sample for galaxy pairs

    CERN Document Server

    Perez, Josefa; Blaizot, Jeremy

    2009-01-01

    Several observational works have attempted to isolate the effects of galaxy interactions by comparing galaxies in pairs with isolated galaxies. However, different authors have proposed different ways to build these so-called control samples (CS). By using mock galaxy catalogues of the SDSS-DR4 built up from the Millennium Simulation, we explore how the way of building a CS might introduce biases which could affect the interpretation of results. We make use of the fact that the physics of interactions is not included in the semianalytic model, to infer that any difference between the mock control and pair samples can be ascribed to selection biases. Thus, we find that galaxies in pairs artificially tend to be older and more bulge-dominated, and to have less cold gas and different metallicities than their isolated counterparts. Also because of a biased selection, galaxies in pairs tend to live in higher density environments, and in haloes of larger masses. We find that imposing constraints on redshift, stellar ...

  15. Differing von Hippel Lindau genotype in paired primary and metastatic tumors in patients with clear cell renal cell carcinoma

    Directory of Open Access Journals (Sweden)

    Susan A.J. Vaziri

    2012-05-01

    Full Text Available In sporadic clear cell renal cell carcinoma (CCRCC, the von Hippel Lindau (VHL gene is inactivated by mutation or methylation in the majority of primary (P tumors. Due to differing effects of wild-type (WT and mutant (MT VHL gene on downstream signaling pathways regulating angiogenesis, VHL gene status could impact clinical outcome. In CCRCC, comparative genomic hybridization (CGH analysis studies have reported genetic differences between paired P and metastatic (M tumors. We thus sequenced the VHL gene in paired tumor specimens from 10 patients to determine a possible clonal relationship between the P tumor and M lesion(s in patients with CCRCC. Using paraffin embedded specimens, genomic DNA from microdissected samples (>80% tumor of paired P tumor and M lesions from all 10 patients, as well as in normal tissue from 6 of these cases, was analyzed. The DNA was used for PCR-based amplification of each of the 3 exons of the VHL gene. Sequences derived from amplified samples were compared to the wild-type VHL gene sequence (GeneBank Accession No. AF010238. Methylation status of the VHL gene was determined using VHL methylation-specific PCR primers after DNA bisulfite modification. In 4/10 (40% patients the VHL gene status differed between the P tumor and the M lesion. As expected, when the VHL gene was mutated in both the P tumor and M lesion, the mutation was identical. Further, while the VHL genotype differed between the primary tumor in different kidneys or multiple metastatic lesions in the same patient, the VHL germline genotype in the normal adjacent tissue was always wild-type irrespective of the VHL gene status in the P tumor. These results demonstrate for the first time that the VHL gene status can be different between paired primary and metastatic tissue in patients with CCRCC.

  16. A context dependent pair hidden Markov model for statistical alignment

    CERN Document Server

    Arribas-Gil, Ana

    2011-01-01

    This article proposes a novel approach to statistical alignment of nucleotide sequences by introducing a context dependent structure on the substitution process in the underlying evolutionary model. We propose to estimate alignments and context dependent mutation rates relying on the observation of two homologous sequences. The procedure is based on a generalized pair-hidden Markov structure, where conditional on the alignment path, the nucleotide sequences follow a Markov distribution. We use a stochastic approximation expectation maximization (saem) algorithm to give accurate estimators of parameters and alignments. We provide results both on simulated data and vertebrate genomes, which are known to have a high mutation rate from CG dinucleotide. In particular, we establish that the method improves the accuracy of the alignment of a human pseudogene and its functional gene.

  17. Modelling of top quark pairs production in association with Standard Model bosons or heavy quark pairs.

    CERN Document Server

    Moreno Llacer, Maria; The ATLAS collaboration

    2016-01-01

    Production of top quark pairs in association with heavy Standard Model bosons or with heavy flavour quark-pairs is important both as a signal and a background in several ATLAS analyses. Strong constraints on such processes cannot at present be obtained from data, and therefore their modeling by Monte Carlo simulation as well as the associated uncertainties are important. This poster documents the Monte Carlo samples currently being used in ATLAS for the ttH and ttV (V=W,Z vector bosons) and tt+bottom and charm quark pairs processes for sqrt(s)=13 TeV proton-proton collisions.

  18. Dopamine and opioid systems interact within the nucleus accumbens to maintain monogamous pair bonds

    Science.gov (United States)

    Resendez, Shanna L; Keyes, Piper C; Day, Jeremy J; Hambro, Caely; Austin, Curtis J; Maina, Francis K; Eidson, Lori N; Porter-Stransky, Kirsten A; Nevárez, Natalie; McLean, J William; Kuhnmuench, Morgan A; Murphy, Anne Z; Mathews, Tiffany A; Aragona, Brandon J

    2016-01-01

    Prairie vole breeder pairs form monogamous pair bonds, which are maintained through the expression of selective aggression toward novel conspecifics. Here, we utilize behavioral and anatomical techniques to extend the current understanding of neural mechanisms that mediate pair bond maintenance. For both sexes, we show that pair bonding up-regulates mRNA expression for genes encoding D1-like dopamine (DA) receptors and dynorphin as well as enhances stimulated DA release within the nucleus accumbens (NAc). We next show that D1-like receptor regulation of selective aggression is mediated through downstream activation of kappa-opioid receptors (KORs) and that activation of these receptors mediates social avoidance. Finally, we also identified sex-specific alterations in KOR binding density within the NAc shell of paired males and demonstrate that this alteration contributes to the neuroprotective effect of pair bonding against drug reward. Together, these findings suggest motivational and valence processing systems interact to mediate the maintenance of social bonds. DOI: http://dx.doi.org/10.7554/eLife.15325.001 PMID:27371827

  19. Dopamine and opioid systems interact within the nucleus accumbens to maintain monogamous pair bonds.

    Science.gov (United States)

    Resendez, Shanna L; Keyes, Piper C; Day, Jeremy J; Hambro, Caely; Austin, Curtis J; Maina, Francis K; Eidson, Lori; Porter-Stransky, Kirsten A; Nevárez, Natalie; McLean, J William; Kuhnmuench, Morgan A; Murphy, Anne Z; Mathews, Tiffany A; Aragona, Brandon J

    2016-01-01

    Prairie vole breeder pairs form monogamous pair bonds, which are maintained through the expression of selective aggression toward novel conspecifics. Here, we utilize behavioral and anatomical techniques to extend the current understanding of neural mechanisms that mediate pair bond maintenance. For both sexes, we show that pair bonding up-regulates mRNA expression for genes encoding D1-like dopamine (DA) receptors and dynorphin as well as enhances stimulated DA release within the nucleus accumbens (NAc). We next show that D1-like receptor regulation of selective aggression is mediated through downstream activation of kappa-opioid receptors (KORs) and that activation of these receptors mediates social avoidance. Finally, we also identified sex-specific alterations in KOR binding density within the NAc shell of paired males and demonstrate that this alteration contributes to the neuroprotective effect of pair bonding against drug reward. Together, these findings suggest motivational and valence processing systems interact to mediate the maintenance of social bonds. PMID:27371827

  20. Water-Mediated Ion Pairing: Occurrence and Relevance

    DEFF Research Database (Denmark)

    van der Vegt, Nico F.A.; Haldrup, Kristoffer; Roke, Sylvie;

    2016-01-01

    salt solutions and their interfaces, the measured and calculated structure and dynamics reveal the presence of a distinct concentration of contact ion pairs (CIPs), solvent shared ion pairs (SIPs), and solvent-separated ion pairs (2SIPs). We discuss the importance of specific ion-pairing interactions...

  1. Conditional targeting of Ispd using paired Cas9 nickase and a single DNA template in mice

    OpenAIRE

    Angus Yiu-fai Lee; Kevin C. Kent Lloyd

    2014-01-01

    CRISPR/Cas9 technology is a highly promising genome editing tool in the mouse, potentially overcoming the costs and time required for more traditional gene targeting methods in embryonic stem (ES) cells. Recently, compared to the wildtype nuclease, paired Cas9 nickase (Cas9n) combined with single guide RNA (sgRNA) molecules has been found to enhance the specificity of genome editing while reducing off-target effects. Paired Cas9n has been shown to be as efficient as Cas9 for generating insert...

  2. Turbulent pair dispersion of inertial particles

    CERN Document Server

    Bec, J; Lanotte, A S; Scagliarini, A; Toschi, F

    2009-01-01

    The relative dispersion of pairs of inertial particles in incompressible, homogeneous, and isotropic turbulence is studied by means of direct numerical simulations at two values of the Taylor-scale Reynolds number $Re_{\\lambda} \\sim 200$ and 400. The evolution of both heavy and light particle pairs is analysed at varying the particle Stokes number and the fluid-to-particle density ratio. For heavy particles, it is found that turbulent dispersion is schematically governed by two temporal regimes. The first is dominated by the presence, at large Stokes numbers, of small-scale caustics in the particle velocity statistics, and it lasts until heavy particle velocities have relaxed towards the underlying flow velocities. At such large scales, a second regime starts where heavy particles separate as tracers particles would do. As a consequence, at increasing inertia, a larger transient stage is observed, and the Richardson diffusion of simple tracers is recovered only at large times and large scales. These features ...

  3. Average prime-pair counting formula

    Science.gov (United States)

    Korevaar, Jaap; Riele, Herman Te

    2010-04-01

    Taking r>0 , let π_{2r}(x) denote the number of prime pairs (p, p+2r) with p≤ x . The prime-pair conjecture of Hardy and Littlewood (1923) asserts that π_{2r}(x)˜ 2C_{2r} {li}_2(x) with an explicit constant C_{2r}>0 . There seems to be no good conjecture for the remainders ω_{2r}(x)=π_{2r}(x)- 2C_{2r} {li}_2(x) that corresponds to Riemann's formula for π(x)-{li}(x) . However, there is a heuristic approximate formula for averages of the remainders ω_{2r}(x) which is supported by numerical results.

  4. Superrotations and Black Hole Pair Creation

    CERN Document Server

    Strominger, Andrew

    2016-01-01

    Recent work has shown that the symmetries of classical gravitational scattering in asymptotically flat spacetimes include, at the linearized level, infinitesimal superrotations. These act like Virasoro generators on the celestial sphere at null infinity. However, due to the singularities in these generators, the physical status of finite superrotations has remained unclear. Here we address this issue in the context of the breaking of a cosmic string via quantum black hole pair nucleation. This process is described by a gravitational instanton known as the $C$-metric. After pair production, the black holes are pulled by the string to null infinity with a constant acceleration. At late times the string decays and the spacetime settles into a vacuum state. We show that the early and late spacetimes before and after string decay differ by a finite superrotation. This provides a physical interpretation of superrotations. They act on spacetimes which are asymptotically flat everywhere except at isolated singulariti...

  5. Resonant Repulsion of Kepler Planet Pairs

    CERN Document Server

    Lithwick, Yoram

    2012-01-01

    Planetary systems discovered by the Kepler space telescope exhibit an intriguing feature. While the period ratios of adjacent low-mass planets appear largely random, there is a significant excess of pairs that lie just wide of resonances and a deficit on the near side. We demonstrate that this feature naturally arises when two near-resonant planets interact in the presence of weak dissipation that damps eccentricities. The two planets repel each other as orbital energy is lost to heat. This moves near-resonant pairs just beyond resonance, by a distance that reflects the integrated dissipation they experienced over their lifetimes. We find that the observed distances may be explained by tidal dissipation if tides are efficient (tidal quality factor ~10). Once the effect of resonant repulsion is accounted for, the initial orbits of these low mass planets show little preference for resonances. This is a strong constraint on their origin.

  6. Transmission properties of cryogenic twisted pair filters

    Energy Technology Data Exchange (ETDEWEB)

    Song, Woon; Rehman, Mushtaq; Chong, Yonuk [Korea Research Institute of Standards and Science, Daejeon (Korea, Republic of); Ryu, Sangwan [Chonnam National University, Gwangju (Korea, Republic of)

    2010-12-15

    We fabricated a cryogenic low pass filter that consists of twisted pairs of manganin wires wrapped in copper tape and measured its transmission characteristics at frequencies up to 18 GHz. The dependence of the microwave transmission characteristics on the filter length was studied, which showed that a filter of length 1.0 m had a 70-dB attenuation at 1 GHz. We also studied the dependence of common- and differential-mode transmission on the number of twists per unit length and found that the number of twists per unit length affects differential-mode transmission but not common-mode transmission. Because the shielded twisted pair filter is more compact than a conventional copper powder filter, it can solve the space and thermal load issues when many cables are required for precision electronic transport experiments at low temperatures.

  7. A search for resonant Z pair production

    Energy Technology Data Exchange (ETDEWEB)

    Boveia, Antonio [Univ. of California, Santa Barbara, CA (United States)

    2008-12-01

    I describe a search for anomalous production of Z pairs through a new massive resonance X in 2.5-2.9 fb-1 of p$\\bar{p}$ collisions at √s = 1.96 TeV using the CDFII Detector at the Fermilab Tevatron. I reconstruct Z pairs through their decays to electrons, muons, and quarks. To achieve perhaps the most efficient lepton reconstruction ever used at CDF, I apply a thorough understanding of the detector and new reconstruction software heavily revised for this purpose. In particular, I have designed and employ new general-purpose algorithms for tracking at large η in order to increase muon acceptance. Upon analyzing the unblinded signal samples, I observe no X → ZZ candidates and set upper limits on the production cross section using a Kaluza-Klein graviton-like acceptance.

  8. Top pair production measurements at ATLAS.

    CERN Document Server

    AUTHOR|(INSPIRE)INSPIRE-00445370

    2016-01-01

    Measurements of the inclusive and differential top-quark pair cross sections in proton-proton collisions at both 8 TeV and 13 TeV with the ATLAS detector at the Large Hadron Collider are presented. The inclusive measurements reach high precision and are compared to the best available theoretical calculations. Differential measurements of the kinematic properties of the top quark production are also discussed. These measurements, including results using boosted tops, probe our understanding of top pair production in the TeV regime. The results, extrapolated to particle and parton level, are compared to Monte Carlo generators implementing LO and NLO matrix elements matched with parton showers and NNLO QCD calculations.

  9. Schwinger pair production with ultracold atoms

    Science.gov (United States)

    Kasper, V.; Hebenstreit, F.; Oberthaler, M. K.; Berges, J.

    2016-09-01

    We consider a system of ultracold atoms in an optical lattice as a quantum simulator for electron-positron pair production in quantum electrodynamics (QED). For a setup in one spatial dimension, we investigate the nonequilibrium phenomenon of pair production including the backreaction leading to plasma oscillations. Unlike previous investigations on quantum link models, we focus on the infinite-dimensional Hilbert space of QED and show that it may be well approximated by experiments employing Bose-Einstein condensates interacting with fermionic atoms. Numerical calculations based on functional integral techniques give a unique access to the physical parameters required to realize QED phenomena in a cold atom experiment. In particular, we use our approach to consider quantum link models in a yet unexplored parameter regime and give bounds for their ability to capture essential features of the physics. The results suggest a paradigmatic change towards realizations using coherent many-body states for quantum simulations of high-energy particle physics phenomena.

  10. Extra-pair paternity in waved albatrosses.

    Science.gov (United States)

    Huyvaert, K P; Anderson, D J; Jones, T C; Duan, W; Parker, P G

    2000-09-01

    We estimated the rate of extra-pair fertilizations (EPFs) in waved albatrosses (Phoebastria irrorata) on Isla Española, Galápagos, Ecuador, using multilocus minisatellite DNA fingerprinting. Waved albatrosses are socially monogamous, long-lived seabirds whose main population is on Española. Aggressive extra-pair copulation (EPC) attempts have been observed in the breeding colony during the days preceding egg-laying. Our genetic analyses of 16 families (single chicks and their attending parents) revealed evidence of EPFs in four families. In all cases males were the excluded parent. These data suggest that waved albatrosses have an unusually high rate of EPF relative to taxa with similar life histories. Future behavioural observations will determine the extent to which forced vs. unforced EPCs contribute to this high EPF rate. PMID:10972780

  11. Dual Resolution Images from Paired Fingerprint Cards

    Science.gov (United States)

    NIST Dual Resolution Images from Paired Fingerprint Cards (PC database for purchase)   NIST Special Database 30 is being distributed for use in development and testing of fingerprint compression and fingerprint matching systems. The database allows the user to develop and evaluate data compression algorithms for fingerprint images scanned at both 19.7 ppmm (500 dpi) and 39.4 ppmm (1000 dpi). The data consist of 36 ten-print paired cards with both the rolled and plain images scanned at 19.7 and 39.4 pixels per mm. A newer version of the compression/decompression software on the CDROM can be found at the website http://www.nist.gov/itl/iad/ig/nigos.cfm as part of the NBIS package.

  12. Paired structures and bipolar knowledge representation

    DEFF Research Database (Denmark)

    Montero, Javier; Bustince, Humberto; Franco, Camilo;

    In this strictly positional paper we propose a general approach to bipolar knowledge representation, where the meaning of concepts can be modelled by examining their decomposition into opposite and neutral categories. In particular, it is the semantic relationship between the opposite categories...... and at the same time the type of neutrality rising in between opposites. Based on this first level of bipolar knowledge representation, paired structures in fact offer the means to characterize a specific bipolar valuation scale depending on the meaning of the concept that has to be verified. In this sense...... which suggests the emergence of a paired structure and its associated type of neutrality, being there three general types of neutral categories, namely indeterminacy, ambivalence and conflict. Hence, the key issue consists in identifying the semantic opposition characterizing the meaning of concepts...

  13. REX: Explaining Relationships between Entity Pairs

    CERN Document Server

    Fang, Lujun; Yu, Cong; Bohannon, Philip

    2011-01-01

    Knowledge bases of entities and relations (either constructed manually or automatically) are behind many real world search engines, including those at Yahoo!, Microsoft, and Google. Those knowledge bases can be viewed as graphs with nodes representing entities and edges representing (primary) relationships, and various studies have been conducted on how to leverage them to answer entity seeking queries. Meanwhile, in a complementary direction, analyses over the query logs have enabled researchers to identify entity pairs that are statistically correlated. Such entity relationships are then presented to search users through the "related searches" feature in modern search engines. However, entity relationships thus discovered can often be "puzzling" to the users because why the entities are connected is often indescribable. In this paper, we propose a novel problem called "entity relationship explanation", which seeks to explain why a pair of entities are connected, and solve this challenging problem by integra...

  14. Pairing and anti-pairing: a balancing act in the diploid genome

    Science.gov (United States)

    Joyce, Eric F.; Erceg, Jelena; Wu, C.-ting

    2016-01-01

    The presence of maternal and paternal homologs appears to be much more than just a doubling of genetic material. We know this because genomes have evolved elaborate mechanisms that permit homologous regions to sense and then respond to each other. One way in which homologs communicate is to come into contact and, in fact, Dipteran insects such as Drosophila excel at this task, aligning all pairs of maternal and paternal chromosomes, end-to-end, in essentially all somatic tissues throughout development. Here, we reexamine the widely held tenet that extensive somatic pairing of homologous sequences cannot occur in mammals and suggest, instead, that pairing may be a widespread and significant potential that has gone unnoticed in mammals because they expend considerable effort to prevent it. We then extend this discussion to interchromosomal interactions, in general, and speculate about the potential of nuclear organization and pairing to impact inheritance. PMID:27065367

  15. Na+ Cl- ion pair association in water-DMSO mixtures: Effect of ion pair model potentials

    Indian Academy of Sciences (India)

    ATANU SARKAR; ANUPAM CHATTERJEE; S C TIWARI; B L TEMBE

    2016-06-01

    Potentials of Mean Force (PMF) for the Na+ Cl- ion pair in water–dimethyl sulfoxide (DMSO)mixtures for three DMSO mole fractions have been computed using constrained Molecular Dynamics (MD)simulations and confirmed by dynamical trajectories and residence times of the ion pair at various inter-ionicseparations. The three ion-ion direct potentials used are 12-6-1, exp-6-1 and exp-8-6-1. The physical picturethat emerges is that there is a strong contact ion pair (CIP) and strong to moderate solvent separated ion pair(SSIP) in these solutions. Analysis of local ion clusters shows that ions are dominantly solvated by watermolecules. The 12-6-1 potential model predicts running coordination numbers closest to experimental data.

  16. General pairing interactions and pair truncation approximations for fermions in a single-j shell

    CERN Document Server

    Zhao, Y M; Ginocchio, J N; Yoshinaga, N

    2003-01-01

    We investigate Hamiltonians with attractive interactions between pairs of fermions coupled to angular momentum J. We show that pairs with spin J are reasonable building blocks for the low-lying states. For systems with only a J = Jmax pairing interaction, eigenvalues are found to be approximately integers for a large array of states, in particular for those with total angular momenta I le 2j. For I=0 eigenstates of four fermions in a single-j shell we show that there is only one non-zero eigenvalue. We address these observations using the nucleon pair approximation of the shell model and relate our results with a number of currently interesting problems.

  17. Radio structures in QSO-galaxy pairs

    International Nuclear Information System (INIS)

    It is now generally agreed that if quasars and nearby low redshift galaxies are associated, then there should be luminous connections between them. However, most of the observational evidence being presented is in the optical domain, whereas such evidence should also exist at radio frequencies. The author is, therefore, investigating some quasar-galaxy pairs at radio frequencies to search for luminous connections and other structural peculiarities. Radio maps of some of these sources are presented

  18. Quantum Computation by Pairing Trapped Ultracold Ions

    Institute of Scientific and Technical Information of China (English)

    冯芒; 朱熙文; 高克林; 施磊

    2001-01-01

    Superpositional wavefunction oscillations for the implementation of quantum algorithms modify the desired interference required for the quantum computation. We propose a scheme with trapped ultracold ion-pairs beingqubits to diminish the detrimental effect of the wavefunction oscillations, which is applied to the two-qubitGrover's search. It can be also found that the qubits in our scheme are more robust against the decoherencecaused by the environment, and the model is scalable.

  19. Asteroid Systems: Binaries, Triples, and Pairs

    CERN Document Server

    Margot, Jean-Luc; Taylor, Patrick; Carry, Benoît; Jacobson, Seth

    2015-01-01

    In the past decade, the number of known binary near-Earth asteroids has more than quadrupled and the number of known large main belt asteroids with satellites has doubled. Half a dozen triple asteroids have been discovered, and the previously unrecognized populations of asteroid pairs and small main belt binaries have been identified. The current observational evidence confirms that small (20 km) binaries with small satellites are most likely created during large collisions.

  20. Pair Correlations in Superfluid Helium 3

    OpenAIRE

    Vollhardt, D.

    1997-01-01

    In 1996 Lee, Osheroff and Richardson received the Nobel Prize for their 1971 discovery of superfluid helium 3 -- a discovery which opened the door to the most fascinating system known in condensed matter physics. The superfluid phases of helium 3, originating from pair condensation of helium 3 atoms, turned out to be the ideal test-system for many fundamental concepts of modern physics, such as macroscopic quantum phenomena, (gauge-)symmetries and their spontaneous breakdown, topological defe...

  1. Search for Scalar Leptoquark Pairs Decaying to $\

    CERN Document Server

    Acosta, D; Affolder, T; Akimoto, T; Albrow, M G; Ambrose, D; Amerio, S; Amidei, D; Anastassov, A; Anikeev, K; Annovi, A; Antos, J; Aoki, M; Apollinari, G; Arisawa, T; Arguin, J F; Artikov, A; Ashmanskas, W; Attal, A; Azfar, F; Azzi-Bacchetta, P; Bacchetta, N; Bachacou, H; Badgett, W; Barbaro-Galtieri, A; Barker, G J; Barnes, V E; Barnett, B A; Baroiant, S; Barone, M; Bauer, G; Bedeschi, F; Behari, S; Belforte, S; Bellettini, G; Bellinger, J; Ben-Haim, E; Benjamin, D; Beretvas, A; Bhatti, A A; Binkley, M; Bisello, D; Bishai, M; Blair, R E; Blocker, C; Bloom, K; Blumenfeld, B; Bocci, A; Bodek, A; Bölla, G; Bolshov, A; Booth, P S L; Bortoletto, D; Boudreau, J; Bourov, S; Bromberg, C; Brubaker, E; Budagov, Yu A; Budd, H S; Burkett, K; Busetto, G; Bussey, P; Byrum, K L; Cabrera, S; Campanelli, M; Campbell, M; Canepa, A; Casarsa, M; Carlsmith, D; Carron, S; Carosi, R; Cavalli-Sforza, M; Castro, A; Catastini, P; Cauz, D; Cerri, A; Cerrito, L; Chapman, J; Chen, C; Chen, Y C; Chertok, M; Chiarelli, G; Chlachidze, G; Chlebana, F; Cho, I; Cho, K; Chokheli, D; Chou, J P; Chu, M L; Chuang, S; Chung, J Y; Chung, W H; Chung, Y S; Ciobanu, C I; Ciocci, M A; Clark, A G; Clark, D; Coca, M; Connolly, A; Convery, M; Conway, J; Cooper, B; Cordelli, M; Cortiana, G; Cranshaw, J; Cuevas-Maestro, J; Culbertson, R; Currat, C; Cyr, D; Dagenhart, D; Da Ronco, S; D'Auria, S; De Barbaro, P; De Cecco, S; De Lentdecker, G; Dell'Agnello, S; Dell'Orso, Mauro; Demers, S; Demortier, L; Deninno, M; De Pedis, D; Derwent, P F; Dionisi, C; Dittmann, J R; Doerr, C; Doksus, P; Dominguez, A; Donati, S; Donega, M; Donini, J; D'Onofrio, M; Dorigo, T; Drollinger, V; Ebina, K; Eddy, N; Ely, R; Erbacher, R; Erdmann, M; Errede, D; Errede, S; Eusebi, R; Fang, H C; Farrington, S; Fedorko, I; Fedorko, W T; Feild, R G; Feindt, M; Fernández, J P; Ferretti, C; Field, R D; Flanagan, G; Flaugher, B; Flores-Castillo, L R; Foland, A; Forrester, S; Foster, G W; Franklin, M; Freeman, J C; Fujii, Y; Furic, I; Gajjar, A; Gallas, A; Galyardt, J; Gallinaro, M; García-Sciveres, M; Garfinkel, A F; Gay, C; Gerberich, H; Gerdes, D W; Gerchtein, E; Giagu, S; Giannetti, P; Gibson, A; Gibson, K; Ginsburg, C; Giolo, K; Giordani, M; Giunta, M; Giurgiu, G; Glagolev, V; Glenzinski, D; Gold, M; Goldschmidt, N; Goldstein, D; Goldstein, J; Gómez, G; Gómez-Ceballos, G; Goncharov, M; González, O; Gorelov, I; Goshaw, A T; Gotra, Yu; Goulianos, K; Gresele, A; Griffiths, M; Grosso-Pilcher, C; Grundler, U; Günther, M; Guimarães da Costa, J; Haber, C; Hahn, K; Hahn, S R; Halkiadakis, E; Hamilton, A; Han, B Y; Handler, R; Happacher, F; Hara, K; Hare, M; Harr, R F; Harris, R M; Hartmann, F; Hatakeyama, K; Hauser, J; Hays, C; Hayward, H; Heider, E; Heinemann, B; Heinrich, J; Hennecke, M; Herndon, M; Hill, C; Hirschbuehl, D; Höcker, A; Hoffman, K D; Holloway, A; Hou, S; Houlden, M A; Huffman, B T; Huang, Y; Hughes, R E; Huston, J; Ikado, K; Incandela, J R; Introzzi, G; Iori, M; Ishizawa, Y; Issever, C; Ivanov, A; Iwata, Y; Iyutin, B; James, E; Jang, D; Jarrell, J; Jeans, D; Jensen, H; Jeon, E J; Jones, M; Joo, K K; Jun, S; Junk, T R; Kamon, T; Kang, J; Karagoz-Unel, M; Karchin, P E; Kartal, S; Kato, Y; Kemp, Y; Kephart, R; Kerzel, U; Khotilovich, V; Kilminster, B; Kim, D H; Kim, H S; Kim, J E; Kim, M J; Kim, M S; Kim, S B; Kim, S H; Kim, T H; Kim, Y K; King, B T; Kirby, M; Kirsch, L; Klimenko, S; Knuteson, B; Ko, B R; Kobayashi, H; Koehn, P; Kong, D J; Kondo, K; Konigsberg, J; Kordas, K; Korn, A J; Korytov, A; Kotelnikov, K; Kotwal, A V; Kovalev, A; Kraus, J; Kravchenko, I; Kreymer, A; Kroll, J; Kruse, M; Krutelyov, V; Kuhlmann, S E; Kuznetsova, N; Laasanen, A T; Lai, S; Lami, S; Lammel, S; Lancaster, J; Lancaster, M; Lander, R; Lannon, K; Lath, A; Latino, G; Lauhakangas, R; Lazzizzera, I; Le, Y; Lecci, C; LeCompte, T; Lee, J; Lee, S W; Lefèvre, R; Leonardo, N; Leone, S; Lewis, J D; Li, K; Lin, C; Lin, C S; Lindgren, M; Liss, T M; Litvintsev, D O; Liu, T; Liu, Y; Lockyer, N S; Loginov, A; Loreti, M; Loverre, P F; Lu, R S; Lucchesi, D; Lujan, P; Lukens, P; Lungu, G; Lyons, L; Lys, J; Lysak, R; MacQueen, D; Madrak, R; Maeshima, K; Maksimovic, P; Malferrari, L; Manca, G; Marginean, R; Martin, M; Martin, A; Martin, V; Martínez, M; Maruyama, T; Matsunaga, H; Mattson, M; Mazzanti, P; McFarland, K S; McGivern, D; McIntyre, P M; McNamara, P; NcNulty, R; Menzemer, S; Menzione, A; Merkel, P; Mesropian, C; Messina, A; Miao, T; Miladinovic, N; Miller, L; Miller, R; Miller, J S; Miquel, R; Miscetti, S; Mitselmakher, G; Miyamoto, A; Miyazaki, Y; Moggi, N; Mohr, B; Moore, R; Morello, M; Mukherjee, A; Mulhearn, M; Müller, T; Mumford, R; Munar, A; Murat, P; Nachtman, J; Nahn, S; Nakamura, I; Nakano, I; Napier, A; Napora, R; Naumov, D V; Necula, V; Niell, F; Nielsen, J; Nelson, C; Nelson, T; Neu, C; Neubauer, M S; Newman-Holmes, C; Nicollerat, A S; Nigmanov, T; Nodulman, L; Norniella, O; Österberg, K; Ogawa, T; Oh, S H; Oh, Y D; Ohsugi, T; Okusawa, T; Oldeman, R G C; Orava, R; Orejudos, W; Pagliarone, C; Palencia, E; Paoletti, R; Papadimitriou, V; Pashapour, S; Patrick, J; Pauletta, G; Paulini, M; Pauly, T; Paus, C; Pellett, D; Penzo, Aldo L; Phillips, T J; Piacentino, G; Piedra, J; Pitts, K T; Plager, C; Pompos, A; Pondrom, L; Pope, G; Poukhov, O; Prakoshyn, F; Pratt, T; Pronko, A; Proudfoot, J; Ptohos, F; Punzi, G; Rademacker, J; Rahaman, A; Rakitine, A; Rappoccio, S; Ratnikov, F; Ray, H; Reichold, A; Reisert, B; Rekovic, V; Renton, P B; Rescigno, M; Rimondi, F; Rinnert, K; Ristori, L; Robertson, W J; Robson, A; Rodrigo, T; Rolli, S; Rosenson, L; Roser, R; Rossin, R; Rott, C; Russ, J; Rusu, V; Ruiz, A; Ryan, D; Saarikko, H; Sabik, S; Safonov, A; Saint-Denis, R; Sakumoto, W K; Salamanna, G; Saltzberg, D; Sánchez, C; Sansoni, A; Santi, L; Sarkar, S; Sato, K; Savard, P; Savoy-Navarro, A; Schlabach, P; Schmidt, E E; Schmidt, M P; Schmitt, M; Scodellaro, L; Scribano, A; Scuri, F; Sedov, A; Seidel, S; Seiya, Y; Semeria, F; Sexton-Kennedy, L; Sfiligoi, I; Shapiro, M D; Shears, T G; Shepard, P F; Sherman, D; Shimojima, M; Shochet, M; Shon, Y; Shreyber, I; Sidoti, A; Siegrist, J; Siket, M; Sill, A; Sinervo, P; Sissakian, A N; Skiba, A; Slaughter, A J; Sliwa, K; Smirnov, D; Smith, J R; Snider, F D; Snihur, R; Soha, A; Somalwar, S V; Spalding, J; Spezziga, M; Spiegel, L; Spinella, F; Spiropulu, M; Squillacioti, P; Stadie, H; Stelzer, B; Stelzer-Chilton, O; Strologas, J; Stuart, D; Sukhanov, A; Sumorok, K; Sun, H; Suzuki, T; Taffard, A C; Tafirout, R; Takach, S F; Takano, H; Takashima, R; Takeuchi, Y; Takikawa, K; Tanaka, M; Tanaka, R; Tanimoto, N; Tapprogge, Stefan; Tecchio, M; Teng, P K; Terashi, K; Tesarek, R J; Tether, S; Thom, J; Thompson, A S; Thomson, E; Tipton, P; Tiwari, V; Tkaczyk, S; Toback, D; Tollefson, K; Tomura, T; Tonelli, D; Tonnesmann, M; Torre, S; Torretta, D; Tourneur, S; Trischuk, W; Tseng, J; Tsuchiya, R; Tsuno, S; Tsybychev, D; Turini, N; Turner, M; Ukegawa, F; Unverhau, T; Uozumi, S; Usynin, D; Vacavant, L; Vaiciulis, A W; Varganov, A; Vataga, E; Vejcik, S; Velev, G V; Veszpremi, V; Veramendi, G; Vickey, T; Vidal, R; Vila, I; Vilar, R; Vollrath, I; Volobuev, I P; Von der Mey, M; Wagner, P; Wagner, R G; Wagner, R L; Wagner, W; Wallny, R; Walter, T; Yamashita, T; Yamamoto, K; Wan, Z; Wang, M J; Wang, S M; Warburton, A; Ward, B; Waschke, S; Waters, D; Watts, T; Weber, M; Wester, W C; Whitehouse, B; Wicklund, A B; Wicklund, E; Williams, H H; Wilson, P; Winer, B L; Wittich, P; Wolbers, S; Wolter, M; Worcester, M; Worm, S; Wright, T; Wu, X; Würthwein, F; Wyatt, A; Yagil, A; Yang, U K; Yao, W; Yeh, G P; Yi, K; Yoh, J; Yoon, P; Yorita, K; Yoshida, T; Yu, I; Yu, S; Yu, Z; Yun, J C; Zanello, L; Zanetti, A; Zaw, I; Zetti, F; Zhou, J; Zsenei, A; Zucchelli, S

    2004-01-01

    We report on a search for the pair production of scalar leptoquarks, $LQ$, using 191 pb$^{-1}$ of proton-antiproton collision data recorded by the CDF experiment during Run II of the Tevatron. The leptoquarks are sought via their decay into a neutrino and quark yielding missing transverse energy and several jets of large transverse energy. No evidence for leptoquark production is observed, and limits are set on $\\sigma(p\\bar p\\to LQ\\bar{LQ} X \\to \

  2. Paired structures and bipolar knowledge representation

    OpenAIRE

    Montero, Javier; Bustince, H.; Franco, C.; Rodríguez, Juan Tinguaro; Gómez, Daniel; Pagola, Miguel; Fernandez, Javier; Barrenechea, Edurne

    2014-01-01

    In this strictly positional paper we propose a general approach to bipolar knowledge representation, where the meaning of concepts can be modelled by examining their decomposition into opposite and neutral categories. In particular, it is the semantic relationship between the opposite categories which suggests the emergence of a paired structure and its associated type of neutrality, being there three general types of neutral categories, namely indeterminacy, ambivalence and conflict. Hence, ...

  3. W+- pairs and neutral currents at ISABELLE

    International Nuclear Information System (INIS)

    A report is presented on two different types of processes which may form part of the weak interactions program. The first is the production of pairs of charged weak bosons in the process pp → W+W-X; the second involves searching for neutral current effects in the rate for ordinary lepton production, without measuring any charge asymmetry or helicities using the reaction pp → l+l-X

  4. Pair fireball precursors of neutron star mergers

    Science.gov (United States)

    Metzger, Brian D.; Zivancev, Charles

    2016-10-01

    If at least one neutron star (NS) is magnetized in a binary NS merger, then the orbital motion of the conducting companion during the final inspiral induces a strong voltage and current along the magnetic field lines connecting the NSs. If a modest fraction η of the extracted electromagnetic power extracted accelerates relativistic particles, the resulting gamma-ray emission a compact volume will result in the formation of an electron-positron pair fireball. Applying a steady-state pair wind model, we quantify the detectability of the precursor fireball with gamma-ray satellites. For η ˜ 1 the gamma-ray detection horizon of Dmax ≈ 10(Bd/1014 G)3/4 Mpc is much closer than the Advanced Laser Interferometer Gravitational-Wave Observatory (LIGO)/Virgo horizon of 200 Mpc, unless the NS surface magnetic field strength is very large, B_d ≲ 10^{15} G. Given the quasi-isotropic nature of the emission, mergers with weaker NS fields could contribute a nearby population of short gamma-ray bursts. Power not dissipated close to the binary is carried to infinity along the open field lines by a large-scale Poynting flux. Reconnection within this outflow, well outside of the pair photosphere, provides a potential site for non-thermal emission, such as a coherent millisecond radio burst.

  5. Grandmothering life histories and human pair bonding.

    Science.gov (United States)

    Coxworth, James E; Kim, Peter S; McQueen, John S; Hawkes, Kristen

    2015-09-22

    The evolution of distinctively human life history and social organization is generally attributed to paternal provisioning based on pair bonds. Here we develop an alternative argument that connects the evolution of human pair bonds to the male-biased mating sex ratios that accompanied the evolution of human life history. We simulate an agent-based model of the grandmother hypothesis, compare simulated sex ratios to data on great apes and human hunter-gatherers, and note associations between a preponderance of males and mate guarding across taxa. Then we explore a recent model that highlights the importance of mating sex ratios for differences between birds and mammals and conclude that lessons for human evolution cannot ignore mammalian reproductive constraints. In contradiction to our claim that male-biased sex ratios are characteristically human, female-biased ratios are reported in some populations. We consider the likelihood that fertile men are undercounted and conclude that the mate-guarding hypothesis for human pair bonds gains strength from explicit links with our grandmothering life history. PMID:26351687

  6. Chiral baryon in the coherent pair approximation

    CERN Document Server

    Aly, T S T

    1999-01-01

    We revisit the work of K. Goeke, M. Harvey, F. Grümmer, and J. N. Urbano (Phys. Rev. {\\bf D37}, 754 (1988)) who considered a chiral model for the nucleon based on the linear sigma model with scalar-isoscalar scalar-isovector mesons coupled to quarks and solved using the coherent-pair approximation. In this way the quantum pion field can be treated in a non-perturbative fashion. In this work we review this model and the coherent pair approximation correcting several errors in the earlier work. We minimize the expectation value of the chiral hamiltonian in the ansatz coherent-pair ground state configuration and solve the resulting equations for nucleon quantum numbers. We calculate the canonical set of nucleon observables and compare with the Hedgehog model and experiment. Using the corrected equations yield slightly different values for nucleon observables but do not correct the large virial deviation in the $\\pi$-nucleon coupling. Our results therefore do not significantly alter the conclusions of Goeke, et ...

  7. On fast reconnection in pair plasmas

    Science.gov (United States)

    Zocco, A.; Chacon, L.; Simakov, A.; Lukin, V.

    2008-11-01

    The relevance of two-fluid effects to fast magnetic reconnection in standard electron-proton plasmas is well-known. The currently accepted view is that such fast reconnection is enabled by fast dispersive waves, which originate in the ion-electron mass difference. However, electron-positron (pair) plasmas do not feature such mass difference, and thus do not support fast dispersive waves. Nevertheless, recent kinetic and fluid pair-plasmas simulations have demonstrated that fast magnetic reconnection is indeed possible, thus casting doubt on the accepted view. In this study, we develop an analytical fluid model for 2D reconnection in non-relativistic, large-guide-field, low-β pair plasmas, including inertia, resistivity, and parallel viscosity.^4 We conclude that fast reconnection is possible in the collisionless (viscosity-dominated) regime, but not in the collisional (resistivity-dominated) one. J. Birn et al., J. Geophys. Res. 106 (A3), pp. 3715--3719 (2001) M. A. Shay et al., Geophys. Res. Lett. 26, 2163 (1999); B. N. Rogers et al., Phys. Rev. Lett. 87, 195004 (2001) See e.g. S. Zenitani and M. Hoshino, Astrophys. J. 562, L63 (2001); N. Bessho and A. Bhattacharjee, Phys. Rev. Lett. 95, 245001 (2005); W. Daughton and H. Karimabadi, Phys. Plasmas 14, 72303 (2007). L. Chac'on, A. N. Simakov, V. S. Lukin, A. Zocco, Phys. Rev. Lett., 025003 (2008)

  8. Tree structure compression with RePair

    CERN Document Server

    Lohrey, Markus; Mennicke, Roy

    2010-01-01

    In this work we introduce a new linear time compression algorithm, called "Re-pair for Trees", which compresses ranked ordered trees using linear straight-line context-free tree grammars. Such grammars generalize straight-line context-free string grammars and allow basic tree operations, like traversal along edges, to be executed without prior decompression. Our algorithm can be considered as a generalization of the "Re-pair" algorithm developed by N. Jesper Larsson and Alistair Moffat in 2000. The latter algorithm is a dictionary-based compression algorithm for strings. We also introduce a succinct coding which is specialized in further compressing the grammars generated by our algorithm. This is accomplished without loosing the ability do directly execute queries on this compressed representation of the input tree. Finally, we compare the grammars and output files generated by a prototype of the Re-pair for Trees algorithm with those of similar compression algorithms. The obtained results show that that our...

  9. Extracting gene-gene interactions through curve fitting.

    Science.gov (United States)

    Das, Ranajit; Mitra, Sushmita; Murthy, C A

    2012-12-01

    This paper presents a simple and novel curve fitting approach for generating simple gene regulatory subnetworks from time series gene expression data. Microarray experiments simultaneously generate massive data sets and help immensely in the large-scale study of gene expression patterns. Initial biclustering reduces the search space in the high-dimensional microarray data. The least-squares error between fitting of gene pairs is minimized to extract a set of gene-gene interactions, involving transcriptional regulation of genes. The higher error values are eliminated to retain only the strong interacting gene pairs in the resultant gene regulatory subnetwork. Next the algorithm is extended to a generalized framework to enhance its capability. The methodology takes care of the higher-order dependencies involving multiple genes co-regulating a single gene, while eliminating the need for user-defined parameters. It has been applied to the time-series Yeast data, and the experimental results biologically validated using standard databases and literature. PMID:22997274

  10. Evidence for homosexuality gene

    Energy Technology Data Exchange (ETDEWEB)

    Pool, R.

    1993-07-16

    A genetic analysis of 40 pairs of homosexual brothers has uncovered a region on the X chromosome that appears to contain a gene or genes for homosexuality. When analyzing the pedigrees of homosexual males, the researcheres found evidence that the trait has a higher likelihood of being passed through maternal genes. This led them to search the X chromosome for genes predisposing to homosexuality. The researchers examined the X chromosomes of pairs of homosexual brothers for regions of DNA that most or all had in common. Of the 40 sets of brothers, 33 shared a set of five markers in the q28 region of the long arm of the X chromosome. The linkage has a LOD score of 4.0, which translates into a 99.5% certainty that there is a gene or genes in this area that predispose males to homosexuality. The chief researcher warns, however, that this one site cannot explain all instances of homosexuality, since there were some cases where the trait seemed to be passed paternally. And even among those brothers where there was no evidence that the trait was passed paternally, seven sets of brothers did not share the Xq28 markers. It seems likely that homosexuality arises from a variety of causes.

  11. Morphology Transformation in Pairs of Galaxies The Local Sample

    CERN Document Server

    Junqueira, S; Infante, L; Junqueira, Selma; Mello, Duilia F. de; Infante, Leopoldo

    1997-01-01

    We present photometric analysis of a local sample of 14 isolated pairs of galaxies. The photometric properties analyzed in the local pairs are: colors, morphology, tidal effects and activity. We verify that close pairs have an excess of early-type galaxies and many elliptical galaxies in this pairs are, in fact, lenticular galaxies. Many late-pairs in our sample show strong tidal damage and blue star formation regions. We conclude that pairs of different morphologies may have passed through different evolution processes which violently transformed their morphology. Pairs with at least one early-type component may be descendents of groups of galaxies. However, late-type pairs are probably long-lived showing clearly signs of interaction. Some of them could be seen as an early stage of mergers. These photometric database will be used for future comparison with more distant pairs in order to study galaxy evolution.

  12. Isolated Main Galaxy Pairs from the SDSS Data Release 4

    Institute of Scientific and Technical Information of China (English)

    Xin-Fa Deng; Yi-Qing Chen; Ping Wu; Cheng-Hong Luo; Ji-Zhou He

    2006-01-01

    From the Main galaxy data of the SDSS Data Release 4 (SDSS4), we have identified close galaxy pairs at neighbourhood radius R = 100 kpc by three-dimensional cluster analysis. Using the criterion that an "isolated galaxy pair" must be separated from its "nearest neighbor" by more than 500 kpc, we constructed an isolated galaxy pair sample of 1158 pairs.We also constructed a random pair sample by randomly selecting 1158 galaxy pairs from the Main galaxy sample, which has the same redshift distribution as the isolated galaxy pair sample, and in which the two components of any pair have the same redshifts. Comparative studies of luminosity and size between the members of the galaxy pairs are performed. We find and further confirm there is no tendency for paired galaxies to have similar luminosities or sizes. From the isolated pair sample we also selected a subsample with the magnitude limit of the primary raised by 2 magnitudes, so as to include pairs in which the secondary is 2 magnitudes fainter than the primary. This subsample contains 82 pairs. A random pair sample is similarly constructed.

  13. When mothers make sons sexy: maternal effects contribute to the increased sexual attractiveness of extra-pair offspring.

    Science.gov (United States)

    Tschirren, Barbara; Postma, Erik; Rutstein, Alison N; Griffith, Simon C

    2012-03-22

    Quality differences between offspring sired by the social and by an extra-pair partner are usually assumed to have a genetic basis, reflecting genetic benefits of female extra-pair mate choice. In the zebra finch (Taeniopygia guttata), we identified a colour ornament that is under sexual selection and appears to have a heritable basis. Hence, by engaging in extra-pair copulations with highly ornamented males, females could, in theory, obtain genes for increased offspring attractiveness. Indeed, sons sired by extra-pair partners had larger ornaments, seemingly supporting the genetic benefit hypothesis. Yet, when comparing ornament size of the social and extra-pair partners, there was no difference. Hence, the observed differences most likely had an environmental basis, mediated, for example, via differential maternal investment of resources into the eggs fertilized by extra-pair and social partners. Such maternal effects may (at least partly) be mediated by egg size, which we found to be associated with mean ornament expression in sons. Our results are consistent with the idea that maternal effects can shape sexual selection by altering the genotype-phenotype relationship for ornamentation. They also caution against automatically attributing greater offspring attractiveness or viability to an extra-pair mate's superior genetic quality, as without controlling for differential maternal investment we may significantly overestimate the role of genetic benefits in the evolution of extra-pair mating behaviour. PMID:21957136

  14. Top quark pair production at the LHC

    Energy Technology Data Exchange (ETDEWEB)

    Baernreuther, Peter

    2012-06-28

    One of the most interesting and manifold processes in the Standard Model of elementary particle physics is the top quark pair production. It enabled the discovery of the top quark at the Tevatron in 1995 and the determination of many of its properties. By means of a precise measurement and calculation of the cross section of top quark pair production it is possible to extract the top quark mass. Improvements in the gluon parton distribution functions (important for the Higgs boson production) or improvements in the prediction of the Higgs mass are also closely linked with the top quark pair production. Furthermore, the production process plays an important role in the discovery of new physics. On the one hand the top quark pair decays form the largest part of the background in many BSM models, on the other hand BSM physics can be detected directly in the decay process by investigating the charge symmetry or the invariant mass spectrum. At the LHC it will be possible for the first time to produce a large amount of top quarks; thereby the statistical errors of the observables will be strongly reduced. The enormous increase in the production rate has two reasons. On the one hand, the acceleration energy of the LHC (14 TeV and 7 TeV) is significantly greater than that of the Tevatron (1.96 Tev). This leads to an increase of the cross section by a factor of 100 ({proportional_to}7.3 pb at the Tevatron to {proportional_to}800 pb at 14 TeV LHC). On the other hand, the luminosity of the LHC outperforms the Tevatron by a factor of 10-100. The reduced experimental errors for the observables demand an improvement of the theoretical error. The experimental accuracy of the LHC and the great relevance of the process led to an intensive activity of different research groups in order to improve the calculation of the cross section of top quark pair production. This work presents for the first time a complete numerical result for the full NNLO correction for the top quark pair

  15. Series-Coupled Pairs of Silica Microresonators

    Science.gov (United States)

    Savchenkov, Anatoliy; Iltchenko, Vladimir; Maleki, Lute; Handley, Tim

    2009-01-01

    Series-coupled pairs of whispering-gallery-mode optical microresonators have been demonstrated as prototypes of stable, narrow-band-pass photonic filters. Characteristics that are generally considered desirable in a photonic or other narrow-band-pass filter include response as nearly flat as possible across the pass band, sharp roll-off, and high rejection of signals outside the pass band. A single microresonator exhibits a Lorentzian filter function: its peak response cannot be made flatter and its roll-off cannot be made sharper. However, as a matter of basic principle applicable to resonators in general, it is possible to (1) use multiple resonators, operating in series or parallel, to obtain a roll-off sharper, and out-of-band rejection greater, relative to those of a Lorentzian filter function and (2) to make the peak response (the response within the pass band) flatter by tuning the resonators to slightly different resonance frequencies that span the pass band. The first of the two microresonators in each series-coupled pair was a microtorus made of germania-doped silica (containing about 19 mole percent germania), which is a material used for the cores of some optical fibers. The reasons for choosing this material is that exposing it to ultraviolet light causes it to undergo a chemical change that changes its index of refraction and thereby changes the resonance frequency. Hence, this material affords the means to effect the desired slight relative detuning of the two resonators. The second microresonator in each pair was a microsphere of pure silica. The advantage of making one of the resonators a torus instead of a sphere is that its spectrum of whispering-gallery-mode resonances is sparser, as needed to obtain a frequency separation of at least 100 GHz between resonances of the filter as a whole.

  16. Pair prediction in a static electric field

    Energy Technology Data Exchange (ETDEWEB)

    Bachega, Riis R.A. [Universidade Federal do Para (UFPA), PA (Brazil); Marques, Glauber T. [Universidade Federal Rural da Amazonia (UFRA), Belem, PA (Brazil); Universidade Federal do Para (UFPA), PA (Brazil)

    2011-07-01

    Full text: The development of the Relativistic Quantum Mechanics was held at the end of the twenties of last century aiming to describe quantum phenomena that occur at high energy scales. The first equation proposed to describe these phenomena was the Klein-Gordon equation, which was formulated in 1927 by Swedish physicist Oscar Klein and the German physicist Walter Gordon. However, the equation led to problematic outcomes, such as negative probability densities and negative energy eigenvalues, which meant a quantum system described by the Klein-Gordon equation can decay to a state energy -{infinity}, thus freeing an infinite amount of energy. Another strange prediction of Relativistic Quantum Mechanics is the well known Klein paradox, which relates a particle on a static electric field with a potential energy much greater than the energy of the particle, and it appears that the reflection coefficient exceeds unity. This result is explained qualitatively by the pair production of particle - antiparticle in the interface potential. To solve such problems, was proposed the Second Quantization, where the Klein-Gordon scalar field is transformed into an operator can no longer be interpreted as a wave function, as in Non-Relativistic Quantum Mechanics formulated by Schroedinger. Thus, we obtain a consistent unification of quantum mechanics with special relativity, solving the problems was discussed earlier. Under the Second Quantization, you can also get a quantitative understanding of Klein's paradox, which will be the topic discussed in this work. The pair production in a static electric field provides a great analogy for a subsequent study of pair production in the event horizon of a black hole, which is known Hawking Effect. (author)

  17. Augmenting Think-Pair-Share with Simulations

    Science.gov (United States)

    Lee, Kevin M.; Siedell, C. M.; Prather, E. E.; CATS

    2009-01-01

    Computer simulations are valuable tools for the teaching and learning of introductory astronomy. They enable students to link together small pieces of information into mental models of complex physical systems that are far beyond their everyday experience. They can also be used to authentically test a student's conceptual understanding of a physical system by asking the student to make predictions regarding its behavior. Students receive formative feedback by testing their predictions in simulations. Think-Pair-Share - the posing of conceptual questions to students and having them vote on the answer before and after discussion with their peers - can benefit considerably from the incorporation of simulations. Simulations can be used for delivering content that precedes Think-Pair-Share, as the prompt the questions is based upon, or as a feedback tool to illustrate the answer to a question. These techniques are utilized in ClassAction - a collection of materials designed to enhance the metacognitive skills of Astro 101 students by promoting interactive engagement and providing rapid feedback. The main focus is dynamic conceptual questions largely based upon graphics that can be projected in the classroom. Many questions are available in a Flash computer database and instructors have the capability to recast these questions into alternate permutations based on their own preferences and student responses. Outlines, graphics, and simulations are included which instructors can use to provide feedback. This poster provides examples of simulation usage in Think-Pair-Share related to sky motions, lunar phases, and stellar properties. A multi-institutional classroom validation study of ClassAction is currently underway as a Collaboration of Astronomy Teaching Scholars (CATS) research project. All materials are publicly available at http://astro.unl.edu. We would like to thank the NSF for funding under Grant Nos. 0404988 and 0715517, a CCLI Phase III Grant for the

  18. Symmetries, Supersymmetries, and Pairing in Nuclei

    CERN Document Server

    Balantekin, A B

    2011-01-01

    These summer school lectures cover the use of algebraic techniques in various subfields of nuclear physics. After a brief description of groups and algebras, concepts of dynamical symmetry, dynamical supersymmetry, and supersymmetric quantum mechanics are introduced. Appropriate tools such as quasiparticles, quasispin, and Bogoliubov transformations are discussed with an emphasis on group theoretical foundations of these tools. To illustrate these concepts three physics applications are worked out in some detail: i) Pairing in nuclear physics; ii) Subbarrier fusion and associated group transformations; and iii) Symmetries of neutrino mass and of a related neutrino many-body problem.

  19. Nonperturbative pair production in interpolating fields

    CERN Document Server

    Ilderton, Anton; Wårdh, Jonatan

    2015-01-01

    We compare the effects of timelike, lightlike and spacelike one-dimensional inhomogeneities on the probability of nonperturbative pair production in strong fields. Using interpolating coordinates we give a unifying picture in which the effect of the inhomogeneity is encoded in branch cuts and poles circulated by complex worldline instantons. For spacelike inhomogeneities the length of the cut is related to the existence of critical points, while for lightlike inhomogeneities the cut contracts to a pole and the instantons become contractable to points, leading to simplifications particular to the lightlike case. We calculate the effective action in fields with up to three nonzero components, and investigate its behaviour under changes in field dependence.

  20. The split decomposition of a tridiagonal pair

    OpenAIRE

    Nomura, Kazumasa; Terwilliger, Paul

    2006-01-01

    Let $K$ denote a field and let $V$ denote a vector space over $K$ with finite positive dimension. We consider a pair of linear transformations $A:V \\to V$ and $A^*:V \\to V$ that satisfy (i)--(iv) below: (i) Each of $A$, $A^*$ is diagonalizable. (ii) There exists an ordering $V_{0},V_{1},...,V_{d}$ of the eigenspaces of $A$ such that $A^* V_i \\subseteq V_{i-1} + V_{i} + V_{i+1}$ for $0 \\leq i \\leq d$, where $V_{-1}=0$, $V_{d+1}=0$. (iii) There exists an ordering $V^*_{0},V^*_{1},...,V^*_{\\delt...

  1. Matched molecular pair analysis in drug discovery.

    Science.gov (United States)

    Dossetter, Alexander G; Griffen, Edward J; Leach, Andrew G

    2013-08-01

    Multiple parameter optimisation in drug discovery is difficult, but Matched Molecular Pair Analysis (MMPA) can help. Computer algorithms can process data in an unbiased way to yield design rules and suggest better molecules, cutting the number of design cycles. The approach often makes more suggestions than can be processed manually and methods to deal with this are proposed. However, there is a paucity of contextually specific design rules, which would truly make the technique powerful. By combining extracted information from multiple sources there is an opportunity to solve this problem and advance medicinal chemistry in a matter of months rather than years. PMID:23557664

  2. Pair potential for Fe-He

    Energy Technology Data Exchange (ETDEWEB)

    Juslin, N. [Department of Physics, University of Helsinki, P.O. Box 43, FI-00014, Helsinki 00014 (Finland)], E-mail: niklas.juslin@helsinki.fi; Nordlund, K. [Department of Physics, University of Helsinki, P.O. Box 43, FI-00014, Helsinki 00014 (Finland)

    2008-12-01

    A new potential for helium in bulk iron was developed in order to study the effect of He in irradiated iron. As helium in iron degrades the material properties, a good description of He defects is of importance for studying radiation damage with He present in iron. We show that a purely repulsive pair potential is enough to reproduce electronic structure calculations results from the literature for He defect formation and migration. Ab initio data for short range Fe-He dimer interaction is used to describe the high energy part of the potential.

  3. Hadroproduction of massive lepton pairs and QCD

    International Nuclear Information System (INIS)

    A survey is presented of some current issues of interest in attempts to describe the production of massive lepton pairs in hadronic collisions at high energies. I concentrate on the interpretation of data in terms of the parton model and on predictions derived from quantum-chromodynamics (QCD), their reliability and their confrontation with experiment. Among topics treated are the connection with deep-inelastic lepton scattering, universality of structure functions, and the behavior of cross-sections as a function of transverse momentum

  4. Efficient Certificateless Signcryption Scheme from Weil Pairing

    Directory of Open Access Journals (Sweden)

    Gang Yu

    2011-08-01

    Full Text Available Certificateless signcryption has both the advantage of certificateless public key cryptography, which overcome the escrow problem inherited from identity based cryptography without the use of certificates as in traditional public key cryptography, and signcryption which can fulfill both the functions of signature and encryption in a logical signal step. In this paper, we explicit the security model for certificateless signcryption and propose an efficient certificateless signcryption scheme from Weil pairings. The new scheme not only can be proved to be secure in our model but also can simultaneously provide public verifiability and forward security. Furthermore, compared with existing schemes, the new scheme is more efficient.

  5. Pairs trading the commodity futures curve

    OpenAIRE

    Nikkanen, A. (Antti)

    2013-01-01

    I create a pairs trade on the commodity futures curve, which captures the roll returns of commodity futures and minimizes the standard deviation of the returns. The end results is a strategy that has an annualized arithmetic return of 6,04% and an annualized standard deviation of 2,01%. Transaction costs and liquidity are also accounted for. The goal was to create and backtest a trading strategy that tries to capture the roll return component of commodity futures returns. In order to redu...

  6. Pair Negotiation When Developing English Speaking Tasks

    Directory of Open Access Journals (Sweden)

    Ingrid Liliana Bohórquez Suárez

    2011-12-01

    Full Text Available This study analyzes what characterizes the negotiations of seventh graders at a public school in Bogotá when working in pairs to develop speaking tasks in EFL classes. The inquiry is a descriptive case study that follows the qualitative paradigm. As a result of analyzing the data, we obtained four consecutive steps that characterize students’ negotiations: Establishing a connection with a partner to work with, proposing practical alternatives, refusing mates’ propositions, and making practical decisions. Moreover, we found that the constant performance of the process of negotiation provokes students to construct a sociolinguistic identity that allows agreements to emerge.

  7. Topological edge states of bound photon pairs

    CERN Document Server

    Gorlach, Maxim A

    2016-01-01

    We predict the existence of interaction-driven edge states of bound two-photon quasiparticles in a dimer periodic array of nonlinear optical cavities. Energy spectrum of photon pairs is dramatically richer than in the noninteracting case or in a simple lattice, featuring collapse and revival of multiple edge and bulk modes as well as edge states in continuum. Despite the unexpected breakdown of the Zak phase technique and the edge mixing of internal and center-of-mass motion we link the edge state existence to the two-photon quantum walk graph connectivity, thus uncovering the topological nature of the many-body problem in complex lattices.

  8. A biometric signcryption scheme without bilinear pairing

    Science.gov (United States)

    Wang, Mingwen; Ren, Zhiyuan; Cai, Jun; Zheng, Wentao

    2013-03-01

    How to apply the entropy in biometrics into the encryption and remote authentication schemes to simplify the management of keys is a hot research area. Utilizing Dodis's fuzzy extractor method and Liu's original signcryption scheme, a biometric identity based signcryption scheme is proposed in this paper. The proposed scheme is more efficient than most of the previous proposed biometric signcryption schemes for that it does not need bilinear pairing computation and modular exponentiation computation which is time consuming largely. The analysis results show that under the CDH and DL hard problem assumption, the proposed scheme has the features of confidentiality and unforgeability simultaneously.

  9. A Guide to Fluorescent Protein FRET Pairs

    Science.gov (United States)

    Bajar, Bryce T.; Wang, Emily S.; Zhang, Shu; Lin, Michael Z.; Chu, Jun

    2016-01-01

    Förster or fluorescence resonance energy transfer (FRET) technology and genetically encoded FRET biosensors provide a powerful tool for visualizing signaling molecules in live cells with high spatiotemporal resolution. Fluorescent proteins (FPs) are most commonly used as both donor and acceptor fluorophores in FRET biosensors, especially since FPs are genetically encodable and live-cell compatible. In this review, we will provide an overview of methods to measure FRET changes in biological contexts, discuss the palette of FP FRET pairs developed and their relative strengths and weaknesses, and note important factors to consider when using FPs for FRET studies. PMID:27649177

  10. A Guide to Fluorescent Protein FRET Pairs

    Directory of Open Access Journals (Sweden)

    Bryce T. Bajar

    2016-09-01

    Full Text Available Förster or fluorescence resonance energy transfer (FRET technology and genetically encoded FRET biosensors provide a powerful tool for visualizing signaling molecules in live cells with high spatiotemporal resolution. Fluorescent proteins (FPs are most commonly used as both donor and acceptor fluorophores in FRET biosensors, especially since FPs are genetically encodable and live-cell compatible. In this review, we will provide an overview of methods to measure FRET changes in biological contexts, discuss the palette of FP FRET pairs developed and their relative strengths and weaknesses, and note important factors to consider when using FPs for FRET studies.

  11. Generalized magnetofluid connections in pair plasmas

    International Nuclear Information System (INIS)

    We extend the magnetic connection theorem of ideal magnetohydrodynamics to nonideal relativistic pair plasmas. Adopting a generalized Ohm's law, we prove the existence of generalized magnetofluid connections that are preserved by the plasma dynamics. We show that these connections are related to a general antisymmetric tensor that unifies the electromagnetic and fluid fields. The generalized magnetofluid connections set important constraints on the plasma dynamics by forbidding transitions between configurations with different magnetofluid connectivity. An approximated solution is explicitly shown where the corrections due to current inertial effects are found

  12. Generalized magnetofluid connections in pair plasmas

    Science.gov (United States)

    Asenjo, Felipe A.; Comisso, Luca; Mahajan, Swadesh M.

    2015-12-01

    We extend the magnetic connection theorem of ideal magnetohydrodynamics to nonideal relativistic pair plasmas. Adopting a generalized Ohm's law, we prove the existence of generalized magnetofluid connections that are preserved by the plasma dynamics. We show that these connections are related to a general antisymmetric tensor that unifies the electromagnetic and fluid fields. The generalized magnetofluid connections set important constraints on the plasma dynamics by forbidding transitions between configurations with different magnetofluid connectivity. An approximated solution is explicitly shown where the corrections due to current inertial effects are found.

  13. Cooper pairs spintronics in triplet spin valves.

    Science.gov (United States)

    Romeo, F; Citro, R

    2013-11-27

    We study a spin valve with a triplet superconductor spacer intercalated between two ferromagnets with noncollinear magnetizations. We show that the magnetoresistance of the triplet spin valve depends on the relative orientations of the d vector, characterizing the superconducting order parameter, and the magnetization directions of the ferromagnetic layers. For devices characterized by a long superconductor, the effects of a polarized current sustained by Cooper pairs only are observed. In this regime, a supermagnetoresistance effect emerges, and the chiral symmetry of the order parameter of the superconducting spacer is easily recognized. Our findings open new perspectives in designing spintronics devices based on the cooperation of ferromagnetic and triplet correlations. PMID:24329463

  14. Mated Fingerprint Card Pairs 2 (MFCP2)

    Science.gov (United States)

    NIST Mated Fingerprint Card Pairs 2 (MFCP2) (PC database for purchase)   NIST Special Database 14 is being distributed for use in development and testing of automated fingerprint classification and matching systems on a set of images which approximate a natural horizontal distribution of the National Crime Information Center (NCIC) fingerprint classes. A newer version of the compression/decompression software on the CDROM can be found at the website http://www.nist.gov/itl/iad/ig/nigos.cfm as part of the NBIS package.

  15. Invisible Decays in Higgs Pair Production

    CERN Document Server

    Banerjee, Shankha; Spannowsky, Michael

    2016-01-01

    Observation of Higgs pair production is an important long term objective of the LHC physics program as it will shed light on the scalar potential of the Higgs field and the nature of electroweak symmetry breaking. While numerous studies have examined the impact of new physics on di-Higgs production, little attention has been given to the well-motivated possibility of exotic Higgs decays in this channel. Here we investigate the consequences of exotic invisible Higgs decays in di-Higgs production. We outline a search sensitive to such invisible decays in the $b\\bar b+{\

  16. Generalized Magnetofluid Connections in Pair Plasmas

    CERN Document Server

    Asenjo, Felipe A; Mahajan, Swadesh M

    2015-01-01

    We extend the magnetic connection theorem of ideal magnetohydrodynamics to nonideal relativistic pair plasmas. Adopting a generalized Ohm's law, we prove the existence of generalized magnetofluid connections that are preserved by the plasma dynamics. We show that these connections are related to a general antisymmetric tensor that unifies the electromagnetic and fluid fields. The generalized magnetofluid connections set important constraints on the plasma dynamics by forbidding transitions between configurations with different magnetofluid connectivity. An approximated solution is explicitly shown where the corrections due to current inertial effects are found.

  17. Generalized magnetofluid connections in pair plasmas

    Energy Technology Data Exchange (ETDEWEB)

    Asenjo, Felipe A., E-mail: felipe.asenjo@uai.cl [Facultad de Ingeniería y Ciencias, Universidad Adolfo Ibáñez, Santiago 7941169 (Chile); Comisso, Luca, E-mail: lcomisso@princeton.edu [Department of Astrophysical Sciences and Princeton Plasma Physics Laboratory, Princeton University, Princeton, New Jersey 08544 (United States); Dipartimento Energia, Politecnico di Torino, Torino 10129, Italy and Istituto dei Sistemi Complessi-CNR, Roma 00185 (Italy); Mahajan, Swadesh M., E-mail: mahajan@mail.utexas.edu [Institute for Fusion Studies, The University of Texas at Austin, Austin, Texas 78712 (United States)

    2015-12-15

    We extend the magnetic connection theorem of ideal magnetohydrodynamics to nonideal relativistic pair plasmas. Adopting a generalized Ohm's law, we prove the existence of generalized magnetofluid connections that are preserved by the plasma dynamics. We show that these connections are related to a general antisymmetric tensor that unifies the electromagnetic and fluid fields. The generalized magnetofluid connections set important constraints on the plasma dynamics by forbidding transitions between configurations with different magnetofluid connectivity. An approximated solution is explicitly shown where the corrections due to current inertial effects are found.

  18. Pair formation in the herbivorous rabbitfish Siganus doliatus.

    Science.gov (United States)

    Brandl, S J; Bellwood, D R

    2013-06-01

    This study investigated the basis of pair formation in the abundant herbivorous rabbitfish Siganus doliatus on Orpheus Island, Great Barrier Reef. Pair formation was the most common social system in S. doliatus, with 67.4% of all individuals occurring in pairs. Pairs were stable (i.e. individuals remained with the same partner throughout the study) and pair members were found within 5 m of each other 82.9% of the time. Of the examined pairs, 25% were homosexual resulting in a proportion of heterosexual pairs (75%) that was significantly lower than expected if pairs were formed solely for reproductive reasons. Therefore, although reproduction appears to be the main driver of pair formation in S. doliatus, other factors are likely to influence this behaviour. The high density of individuals on the reef crest (5.7 ± 0 .9 individuals 200 m(-2); mean ± s.e.) and extensively overlapping home ranges of pairs indicated that the defence of territories plays no role in pair formation. Instead, it appears that pair formation in S. doliatus is driven, in part, by other, non-reproductive, ecological factors. It is suggested that pair formation allows for increased vigilance against predation and enables S. doliatus to execute a novel feeding behaviour.

  19. Development of Primer Pairs from Molecular Typing of Rabies Virus Variants Present in Mexico

    Science.gov (United States)

    Ramírez-Hernández, Dolores G.; Lara-Padilla, Eleazar; Zárate-Segura, Paola

    2016-01-01

    Nucleoprotein (N) gene from rabies virus (RABV) is a useful sequence target for variant studies. Several specific RABV variants have been characterized in different mammalian hosts such as skunk, dog, and bats by using anti-nucleocapsid monoclonal antibodies (MAbs) via indirect fluorescent antibody (IFA) test, a technique not available in many laboratories in Mexico. In the present study, a total of 158 sequences of N gene from RABV were used to design eight pairs of primers (four external and four internal primers), for typing four different RABV variants (dog, skunk, vampire bat, and nonhematophagous bat) which are most common in Mexico. The results indicate that the primer and the typing variant from the brain samples, submitted to nested and/or real-time PCR, are in agreement in all four singleplex reactions, and the designed primer pairs are an alternative for use in specific variant RABV typing. PMID:27563666

  20. Development of Primer Pairs from Molecular Typing of Rabies Virus Variants Present in Mexico.

    Science.gov (United States)

    Bastida-González, Fernando; Ramírez-Hernández, Dolores G; Chavira-Suárez, Erika; Lara-Padilla, Eleazar; Zárate-Segura, Paola

    2016-01-01

    Nucleoprotein (N) gene from rabies virus (RABV) is a useful sequence target for variant studies. Several specific RABV variants have been characterized in different mammalian hosts such as skunk, dog, and bats by using anti-nucleocapsid monoclonal antibodies (MAbs) via indirect fluorescent antibody (IFA) test, a technique not available in many laboratories in Mexico. In the present study, a total of 158 sequences of N gene from RABV were used to design eight pairs of primers (four external and four internal primers), for typing four different RABV variants (dog, skunk, vampire bat, and nonhematophagous bat) which are most common in Mexico. The results indicate that the primer and the typing variant from the brain samples, submitted to nested and/or real-time PCR, are in agreement in all four singleplex reactions, and the designed primer pairs are an alternative for use in specific variant RABV typing. PMID:27563666

  1. From dual pairs of Gabor frames to dual pairs of wavelet frames and vice versa

    DEFF Research Database (Denmark)

    Christensen, Ole; Goh, Say Song

    2014-01-01

    We discuss an elementary procedure that allows us to construct dual pairs of wavelet frames based on certain dual pairs of Gabor frames and vice versa. The construction preserves tightness of the involved frames. Starting with Gabor frames generated by characteristic functions the construction...... leads to a class of tight wavelet frames that include the Shannon (orthonormal) wavelet, and applying the construction to Gabor frames generated by certain exponential B-splines yields wavelet frames generated by functions whose Fourier transforms are compactly supported splines with geometrically...... distributed knot sequences. On the other hand, the pendant of the Meyer wavelet turns out to be a tight Gabor frame generated by a C∞(R) function with compact support. As an application of our results we show that for each given pair of bandlimited dual wavelet frames it is possible to construct dual wavelet...

  2. Synergy between pair coupled cluster doubles and pair density functional theory

    Energy Technology Data Exchange (ETDEWEB)

    Garza, Alejandro J.; Bulik, Ireneusz W. [Department of Chemistry, Rice University, Houston, Texas 77251-1892 (United States); Henderson, Thomas M. [Department of Chemistry and Department of Physics and Astronomy, Rice University, Houston, Texas 77251-1892 (United States); Scuseria, Gustavo E. [Department of Chemistry and Department of Physics and Astronomy, Rice University, Houston, Texas 77251-1892 (United States); Chemistry Department, Faculty of Science, King Abdulaziz University, Jeddah 21589 (Saudi Arabia)

    2015-01-28

    Pair coupled cluster doubles (pCCD) has been recently studied as a method capable of accounting for static correlation with low polynomial cost. We present three combinations of pCCD with Kohn–Sham functionals of the density and on-top pair density (the probability of finding two electrons on top of each other) to add dynamic correlation to pCCD without double counting. With a negligible increase in computational cost, these pCCD+DFT blends greatly improve upon pCCD in the description of typical problems where static and dynamic correlations are both important. We argue that—as a black-box method with low scaling, size-extensivity, size-consistency, and a simple quasidiagonal two-particle density matrix—pCCD is an excellent match for pair density functionals in this type of fusion of multireference wavefunctions with DFT.

  3. Parenting and Psychopathology in Sibling Pairs

    Directory of Open Access Journals (Sweden)

    Jiri Modestin

    2008-06-01

    Full Text Available Background: The current study explored the relationship between parenting experience in childhood as a specific aspect of the non-shared environment and the amount of psychopathology in adulthood. Sampling and Methods: 27 same-sex sibling pairs were studied. In each pair, one proband was a psychiatric outpatient, the other proband a non-patient. All probands filled in the Parental Bonding Instrument (PBI and the Symptom Checklist-90-Revised (SCL-90-R. Results: The patients rated higher on practically all SCL-90-R scales whereas no significant differences were found with regard to the PBI ratings. With only one exception, there were no significant correlations between PBI and SCL-90-R ratings in the group of patients. In contrast, all SCL-90-R subscales correlated negatively with paternal care and half of them positively with paternal control in patients' healthy siblings. Conclusions: The degree of paternal care seems to be most closely related with lack of mental symptoms in psychiatric non-patients. In contrast, parenting does not seem to play a substantial role in patients, presenting with a higher degree of psychopathology. Obviously, environmental factors become less important, the more pronounced the pathology.

  4. Optimisation of a quantum pair space thruster

    Directory of Open Access Journals (Sweden)

    Valeriu DRAGAN

    2012-06-01

    Full Text Available The paper addresses the problem of propulsion for long term space missions. Traditionally a space propulsion unit has a propellant mass which is ejected trough a nozzle to generate thrust; this is also the case with inert gases energized by an on-board power unit. Unconventional methods for propulsion include high energy LASERs that rely on the momentum of photons to generate thrust. Anti-matter has also been proposed for energy storage. Although the momentum of ejected gas is significantly higher, the LASER propulsion offers the perspective of unlimited operational time – provided there is a power source. The paper will propose the use of the quantum pair formation for generating a working mass, this is different than conventional anti-matter thrusters since the material particles generated are used as propellant not as energy storage.Two methods will be compared: LASER and positron-electron, quantum pair formation. The latter will be shown to offer better momentum above certain energy levels.For the demonstrations an analytical solution is obtained and provided in the form of various coefficients. The implications are, for now, theoretical however the practicality of an optimized thruster using such particles is not to be neglected for long term space missions.

  5. Pair Fireball Precursors of Neutron Star Mergers

    CERN Document Server

    Metzger, Brian D

    2016-01-01

    If at least one neutron star (NS) is magnetized in a binary NS merger, then the orbital motion of the conducting companion through its dipole field during the final inspiral induces a strong voltage and current along the magnetic field lines connecting the two objects. If a modest fraction eta of the electromagnetic power extracted during the inspiral is used to accelerate relativistic particles, the resulting gamma-ray emission in such a compact volume will result in the formation of a thermal electron-positron pair fireball. Applying the steady-state pair wind model of Paczynski (1986), we quantify the luminosities and temperatures of the precursor fireball and its detectability with gamma-ray satellites. Under the assumption that eta ~ 1, the gamma-ray detection horizon of Dmax ~ 20(Bd/1e14 G) is much closer than the Advanced LIGO/Virgo horizon of 200 Mpc, unless the surface magnetic field of the NS is very strong, Bd > 1e15 G. Given the quasi-isotropic nature of the emission, a sub-population of mergers w...

  6. Pair emission from bare magnetized strange stars

    CERN Document Server

    Melrose, D B; Peres-Menezes, D

    2006-01-01

    The dominant emission from bare strange stars is thought to be electron-positron pairs, produced through spontaneous pair creation (SPC) in a surface layer of electrons tied to the star by a superstrong electric field. The positrons escape freely, but the electrons are directed towards the star and quickly fill all available states, such that their degeneracy suppresses further SPC. An electron must be reflected and gain energy in order to escape, along with the positron. Each escaping electron leaves a hole that is immediately filled by another electron through SPC. We discuss the collisional processes that produce escaping electrons. When the Landau quantization of the motion perpendicular to the magnetic field is taken into account, electron-electron collisions can lead to an escaping electron only through a multi-stage process involving higher Landau levels. Although the available estimates of the collision rate are deficient in several ways, it appears that the rate is too low for electron-electron colli...

  7. Pair Production Constraints on Superluminal Neutrinos Revisited

    Energy Technology Data Exchange (ETDEWEB)

    Brodsky, Stanley J.; /SLAC; Gardner, Susan; /Kentucky U.

    2012-02-16

    We revisit the pair creation constraint on superluminal neutrinos considered by Cohen and Glashow in order to clarify which types of superluminal models are constrained. We show that a model in which the superluminal neutrino is effectively light-like can evade the Cohen-Glashow constraint. In summary, any model for which the CG pair production process operates is excluded because such timelike neutrinos would not be detected by OPERA or other experiments. However, a superluminal neutrino which is effectively lightlike with fixed p{sup 2} can evade the Cohen-Glashow constraint because of energy-momentum conservation. The coincidence involved in explaining the SN1987A constraint certainly makes such a picture improbable - but it is still intrinsically possible. The lightlike model is appealing in that it does not violate Lorentz symmetry in particle interactions, although one would expect Hughes-Drever tests to turn up a violation eventually. Other evasions of the CG constraints are also possible; perhaps, e.g., the neutrino takes a 'short cut' through extra dimensions or suffers anomalous acceleration in matter. Irrespective of the OPERA result, Lorentz-violating interactions remain possible, and ongoing experimental investigation of such possibilities should continue.

  8. Superluminal Spot Pair Events in Astronomical Settings: Sweeping Beams

    CERN Document Server

    Nemiroff, Robert J

    2014-01-01

    Sweeping beams of light can cast spots moving with superluminal speeds across scattering surfaces. Such faster-than-light speeds are well-known phenomena that do not violate special relativity. It is shown here that under certain circumstances, superluminal spot pair creation and annihilation events can occur that provide unique information to observers. These spot pair events are {\\it not} particle pair events -- they are the sudden creation or annihilation of a pair of relatively illuminated spots on a scattering surface. Real spot pair illumination events occur unambiguously on the scattering surface when spot speeds diverge, while virtual spot pair events are observer dependent and perceived only when real spot radial speeds cross the speed of light. Specifically, a virtual spot pair creation event will be observed when a real spot's speed toward the observer drops below $c$, while a virtual spot pair annihilation event will be observed when a real spot's radial speed away from the observer rises above $c...

  9. A Search for pair production of the LSP $\\tilde{\

    CERN Document Server

    Sahin, M; Sultansoy, S; Yilmaz, M

    2012-01-01

    In this work we consider pair production of LSP tau-sneutrinos at the Compact Lineer Collider. We assume that tau-sneutrinos decays in to e\\textmu pair via RPV interactions. Backgroundless subprocess $e{}^{-}e^{+}\\rightarrow\\tilde{\

  10. The Treeterbi and Parallel Treeterbi algorithms: efficient, optimal decoding for ordinary, generalized and pair HMMs

    DEFF Research Database (Denmark)

    Keibler, Evan; Arumugam, Manimozhiyan; Brent, Michael R

    2007-01-01

    MOTIVATION: Hidden Markov models (HMMs) and generalized HMMs been successfully applied to many problems, but the standard Viterbi algorithm for computing the most probable interpretation of an input sequence (known as decoding) requires memory proportional to the length of the sequence, which can......, our pair HMM based cDNA-to-genome aligner. AVAILABILITY: The TWINSCAN/N-SCAN/PAIRAGON open source software package is available from http://genes.cse.wustl.edu....

  11. CoopTFD: a repository for predicted yeast cooperative transcription factor pairs

    OpenAIRE

    Wu, Wei-Sheng; Lai, Fu-Jou; Tu, Bor-Wen; Chang, Darby Tien-Hao

    2016-01-01

    In eukaryotic cells, transcriptional regulation of gene expression is usually accomplished by cooperative Transcription Factors (TFs). Therefore, knowing cooperative TFs is helpful for uncovering the mechanisms of transcriptional regulation. In yeast, many cooperative TF pairs have been predicted by various algorithms in the literature. However, until now, there is still no database which collects the predicted yeast cooperative TFs from existing algorithms. This prompts us to construct Coope...

  12. Brain Activation during Memory Encoding in Type 2 Diabetes Mellitus: A Discordant Twin Pair Study

    OpenAIRE

    Wood, Amanda G.; Jian Chen; Christopher Moran; Thanh Phan; Richard Beare; Kimberley Cooper; Stacey Litras; Velandai Srikanth

    2016-01-01

    Type 2 diabetes mellitus increases the risk of dementia and neuronal dysfunction may occur years before perceptible cognitive decline. We aimed to study the impact of type 2 diabetes on brain activation during memory encoding in middle-aged people, controlling for age, sex, genes, and early-shared environment. Twenty-two twin pairs discordant for type 2 diabetes mellitus (mean age 60.9 years) without neurological disease were recruited from the Australian Twin Registry (ATR) and underwent fun...

  13. Nuclear Pairing from Two-body Microscopic Forces: Analysis of the Cooper Pair Wavefunctions

    CERN Document Server

    Finelli, P; Holt, J W

    2014-01-01

    In a recent paper we studied the behavior of the pairing gaps $\\Delta_F$ as a function of the Fermi momentum $k_F$ for neutron and nuclear matter in all relevant angular momentum channels where superfluidity is believed to naturally emerge. The calculations employed realistic chiral nucleon-nucleon potentials with the inclusion of three-body forces and self-energy effects. In this contribution, after a detailed description of the numerical method we employed in the solution of the BCS equations, we will show a preliminary analysis of the Cooper pair wavefunctions.

  14. Extensions of Bessel sequences to dual pairs of frames

    DEFF Research Database (Denmark)

    Christensen, Ole; Kim, Hong Oh; Kim, Rae Young

    2013-01-01

    Tight frames in Hilbert spaces have been studied intensively for the past years. In this paper we demonstrate that it often is an advantage to use pairs of dual frames rather than tight frames. We show that in any separable Hilbert space, any pairs of Bessel sequences can be extended to a pair of...... be extended to a pair of dual frames. © 2012 Elsevier Inc. All rights reserved....

  15. Quantum theory of transition radiation and transition pair creation

    OpenAIRE

    Baier, V. N.; Katkov, V. M.

    1998-01-01

    Theory of the transition radiation and the transition pair creation is developed in the frame of QED. The spectral-angular distributions of probability of the transition radiation and of the transition pair creation are found. The total energy losses of and the total probability of pair creation are calculated and analyzed. Features of radiation and pair creation processes in a superdence medium (typical for white dwarfs) are discussed.

  16. Photon pair source via two coupling single quantum emitters

    Institute of Scientific and Technical Information of China (English)

    彭勇刚; 郑雨军

    2015-01-01

    We study the two coupling two-level single molecules driven by an external field as a photon pair source. The proba-bility of emitting two photons, P2, is employed to describe the photon pair source quality in a short time, and the correlation coefficient RAB is employed to describe the photon pair source quality in a long time limit. The results demonstrate that the coupling single quantum emitters can be considered as a stable photon pair source.

  17. Diffraction of collinear correlated photon pairs by an ultrasonic wave

    OpenAIRE

    Kwiek, Piotr

    2013-01-01

    The phenomenon of collinear correlated photon pairs diffraction by an ultrasonic wave is investigated for Bragg incidence. A BBO crystal was used for producing collinear correlated photon pairs via type-I spontaneous parametric down-conversion (SPDC I-type). It is shown experimentally that the Bragg angle for photon pairs diffraction is identical to the one corresponding to single photons diffraction. The numbers of single photons and photon pairs counts in discrete diffraction orders were me...

  18. 神经元素3与成对盒基因4促进胰腺十二指肠同源框蛋白1诱导间充质干细胞向胰腺分泌细胞分化%Neurogenin 3 and Paired box gene 4 promote PDX1-induced differentiation of mesenchymal stem cells into pancreatic secretory cells

    Institute of Scientific and Technical Information of China (English)

    唐小龙; 肖瑞; 王云秀; 何敏; 谢婷; 张成; 刘思景

    2011-01-01

    目的:探索神经元素3(neurogenin 3,NGN3)与成对盒基因4(paired box gene 4,PAX4)对胰腺十二指肠同源框蛋白1(pancreatic and duodenal homeobox factor 1,PDX1)驱动间充质干细胞(mesenchymal stem cells,MSCs)向胰腺β细胞分化过程中的作用.方法:构建PDX1基因及NGN3与PAX4双基因表达腺病毒,重组腺病毒Adxsi-CMV-PDX1感染诱导MSCs1周后,再行重组腺病毒Adxsi-CMV-NGN3/CMV-PAX4感染诱导MSCs;分别检测PDX1、PAX4、NGN3、NK转录因子相关的2.2(NK transcription factor related,gene family 2,locus2,NKX2.2)、v-maf muscu-loaponeurotic fibrosarcoma oncogene homolog B(MafB)、胰岛素(Insulin)、胰高血糖素(Gucagon)多种胰腺分泌细胞相关分子表达情况.结果:成功构建腺病毒Adxsi-CMV-PDX1与Adxsi-CMV-NGN3/CMV-PAX4;MSCs经Adxsi-CMV-PDX1与Adxsi-CMV-NGN3/CMV-PAX4分步诱导后,免疫细胞化学与间接荧光检测显示PDX1、NGN3与PAX4因子在细胞核内稳定表达;重组腺病毒稳定转染5 d后,细胞开始变圆并集聚成团,用双硫腙(dithizone,DTZ)染色细胞质呈亮红色;细胞经诱导1周后,用RT-PCR检测到神经源分化因子1(neurogenic differentiation 1,NruroD1)与NKX2.2表达,2周后可检测胰岛素/胰岛素原分子;间接荧光检测显示诱导后的细胞先后开始表达NKX2.2、MafB等转录因子与胰岛素/胰岛素原、胰高血糖等胰岛分泌细胞相关分子,但未能检测到v-maf musculoaponeurotic fibrosarcoma oncogene homolog A(MafA)与C肽分子表达.结论:NGN3与PAX4对PDX1诱导间充质干细胞向胰腺分泌细胞分化具有促进作用.%Objective :To explore the role of neurogenin 3 ( NGN3 ) and paired box gene 4( PAX4) in the process of PDX1-driven mesenchymal stem cells ( MSCs) to the pancreatic β-cell differentiation. Methods : PDX1 gene and NGN3 were constructed with PAX4 genes expression adenovirus vectors. AdxsiCMV-PDX1 adenovirus infection induced MSCs. One week later, re-Adxsi-CMV-NGN3/CMV-PAX4 adenovirus infection

  19. Fountain-Gould Left Orders for Associative Pairs

    Institute of Scientific and Technical Information of China (English)

    José A. ANQUELA; Teresa CORT(E)S; Miguel G(O)MEZ LOZANO; Mercedes SILES MOLINA

    2006-01-01

    In this paper, we introduce a notion of weak Fountain-Gould left order for associative pairs and give a Goldie-like theory of associative pairs which are weak Fountain-Gould left orders in semiprime pairs coinciding with their socles.

  20. Influence of pairing in double beta decay of48Ca

    Indian Academy of Sciences (India)

    Prianka Roy; Shashi K Dhiman

    2010-03-01

    Two-neutrino decay matrix elements and half-life of 48Ca are calculated after including neutron–proton pairing correlations in projected Hartree–Fock–Bogoliubov (PHFB) formalism. The GT matrix elements in 2 decay are reduced due to broader smearing of Fermi surfaces. Half-life results for 2 decay of 48Ca with np pairing are better than without pairing.

  1. Modeling within-pair order effects in paired-comparison judgments

    DEFF Research Database (Denmark)

    Wickelmaier, Florian Maria; Choisel, Sylvain

    2006-01-01

    Prohabilistic choice models which generalize the Bradley-Terry-Luce (BTL) model (Luce, 1959) and the elimination-by- aspects (EBA) model (Tversky, 1972) are presented. These models account for the effect of presentation order within a pair of stimuli, and thereby allow for quantifying judgmental...

  2. Transgenic Arabidopsis Gene Expression System

    Science.gov (United States)

    Ferl, Robert; Paul, Anna-Lisa

    2009-01-01

    The Transgenic Arabidopsis Gene Expression System (TAGES) investigation is one in a pair of investigations that use the Advanced Biological Research System (ABRS) facility. TAGES uses Arabidopsis thaliana, thale cress, with sensor promoter-reporter gene constructs that render the plants as biomonitors (an organism used to determine the quality of the surrounding environment) of their environment using real-time nondestructive Green Fluorescent Protein (GFP) imagery and traditional postflight analyses.

  3. Authenticating Tripartite Key Agreement Protocol with Pairings

    Institute of Scientific and Technical Information of China (English)

    Sheng-Li Liu; Fang-Guo Zhang; Ke-Fei Chen

    2004-01-01

    In this paper, an authenticated tripartite key agreement protocol is proposed, which is an ID-based one with pairings. This protocol involves only one round. The authenticity of the protocol is assured by a special signature scheme, so that messages carrying the information of two ephemeral keys can be broadcasted authentically by an entity. Consequently, one instance of the protocol results in eight session keys for three entities. In other word, one instance of the protocol generates a session key, which is eight times longer than those obtained from traditional key agreement protocols. Security attributes of the protocol are presented, and the computational overhead and bandwidth of the broadcast messages are analyzed as well.

  4. Frustrated Lewis pairs: Design and reactivity

    Indian Academy of Sciences (India)

    Sanjoy Mukherjee; Pakkirisamy Thilagar

    2015-02-01

    The interaction of a Lewis acid with a Lewis base results in the formation of a Lewis acid–base adduct. Understanding Lewis acids and bases is central to conceptualizing chemical interactions and constitutes a major portion of metal–ligand chemistry. Sterically encumbered/constrained Lewis pairs cannot form acid–base adducts, but such ‘Frustrated Lewis Pairs’ (FLPs), with their unquenched electronic demands can be elegantly used to simultaneously react with a third species, resulting in unusual reactivity of small molecules. Such unusual reactions, explored only in the last few years, have found several applications, e.g., heterolytic splitting of H2, activation of small molecules (CO2, N2O, etc.). FLPs have opened new opportunities in synthetic chemistry, covering organic, main group as well as transition metal chemistry. The design strategies adopted for FLP systems and their unique reactivity are discussed here.

  5. Neutron area monitor with TLD pairs

    Energy Technology Data Exchange (ETDEWEB)

    Guzman G, K. A.; Borja H, C. G.; Valero L, C.; Hernandez D, V. M.; Vega C, H. R., E-mail: ing_karen_guzman@yahoo.com.mx [Universidad Autonoma de Zacatecas, Unidad Academica de Estudios Nucleares, Calle Cipres No. 10. Fracc. La Penuela, 98068 Zacatecas (Mexico)

    2011-11-15

    The response of a passive neutron area monitor with pairs of thermoluminescent dosimeters has been calculated using the Monte Carlo code MCNP5. The response was calculated for one TLD 600 located at the center of a polyethylene cylinder, as moderator. When neutrons collide with the moderator lose their energy reaching the TLD with thermal energies where the ambient dose equivalent is calculated. The response was calculated for 47 monoenergetic neutron sources ranging from 1E(-9) to 20 MeV. Response was calculated using two irradiation geometries, one with an upper source and another with a lateral source. For both irradiation schemes the response was calculated with the TLDs in two positions, one parallel to the source and another perpendicular to the source. The advantage of this passive neutron monitor area is that can be used in locations with intense, pulsed and mixed radiation fields. (Author)

  6. Passive neutron area monitor with TLD pairs

    Energy Technology Data Exchange (ETDEWEB)

    Guzman G, K. A.; Borja H, C. G.; Valero L, C.; Hernandez D, V. M.; Vega C, H. R., E-mail: fermineutron@yahoo.com [Universidad Autonoma de Zacatecas, Unidad Academica de Estudios Nucleares, Cipres No. 10, Fracc. La Penuela, 98068 Zacatecas (Mexico)

    2012-06-15

    The response of a passive neutron area monitor with pairs of thermoluminescent dosimeters (TLD) has been calculated using the Monte Carlo code MCNP5. The response was calculated for one TLD 600 located at the center of a polyethylene moderator. The response was calculated for 47 monoenergetic neutron sources ranging from 1E(-9) to 20 MeV. Response was calculated using two irradiation geometries, one with an upper source and another with a lateral source. For both irradiation schemes the response was calculated with the TLD in two positions, one parallel to the source and another perpendicular to the source. The advantage of this passive neutron monitor area is that can be used in locations with intense, pulsed and mixed radiation fields like those in radiotherapy vault rooms with linear accelerators. (Author)

  7. The stratospheric arrival pair in infrasound propagation.

    Science.gov (United States)

    Waxler, Roger; Evers, Läslo G; Assink, Jelle; Blom, Phillip

    2015-04-01

    The ideal case of a deep and well-formed stratospheric duct for long range infrasound propagation in the absence of tropospheric ducting is considered. A canonical form, that of a pair of arrivals, for ground returns of impulsive signals in a stratospheric duct is determined. The canonical form is derived from the geometrical acoustics approximation, and is validated and extended through full wave modeling. The full caustic structure of the field of ray paths is found and used to determine phase relations between the contributions to the wavetrain from different propagation paths. Finally, comparison with data collected from the 2005 fuel gas depot explosion in Buncefield, England is made. The correspondence between the theoretical results and the observations is shown to be quite good. PMID:25920837

  8. Photogeneration of polaron pairs in conducting polymers

    Science.gov (United States)

    Conwell, E. M.; Mizes, H. A.

    1995-03-01

    It is usually assumed that when photogeneration in a conducting polymer results in an electron and hole on separate chains they form negative and positive polarons that can move independently of each other. We show, on the basis of the small carrier yield per photon seen in picosecond photoconductivity, the different behavior of photoinduced absorption (PA) in dilute solution and thin films, and the spectral distribution of the PA in thin films, that photogenerated positive and negative polarons in poly(p-phenylene vinylene), polythiophene, and polyacetylene are, for the most part, bound in pairs by their Coulomb attraction. We also show that PA data give evidence for a gap of 2.8 eV, and thus an exciton binding energy of 0.4 eV, in poly(p-phenylene vinylene).

  9. Dust trapping in inviscid vortex pairs

    CERN Document Server

    Angilella, Jean-Regis

    2010-01-01

    The motion of tiny heavy particles transported in a co-rotating vortex pair, with or without particle inertia and sedimentation, is investigated. The dynamics of non-inertial sedimenting particles is shown to be chaotic, under the combined effect of gravity and of the circular displacement of the vortices. This phenomenon is very sensitive to particle inertia, if any. By using nearly hamiltonian dynamical system theory for the particle motion equation written in the rotating reference frame, one can show that small inertia terms of the particle motion equation strongly modify the Melnikov function of the homoclinic trajectories and heteroclinic cycles of the unperturbed system, as soon as the particle response time is of the order of the settling time (Froude number of order unity). The critical Froude number above which chaotic motion vanishes and a regular centrifugation takes place is obtained from this Melnikov analysis and compared to numerical simulations. Particles with a finite inertia, and in the abs...

  10. Ultracompact quantum splitter of degenerate photon pairs

    CERN Document Server

    He, Jiakun; Casas-Bedoya, Alvaro; Zhang, Yanbing; Xiong, Chunle; Eggleton, Benjamin J

    2015-01-01

    Integrated sources of indistinguishable photons have attracted a lot of attention because of their applications in quantum communication and optical quantum computing. Here, we demonstrate an ultra-compact quantum splitter for degenerate single photons based on a monolithic chip incorporating Sagnac loop and a micro-ring resonator with a footprint of 0.011 mm2, generating and deterministically splitting indistinguishable photon pairs using time-reversed Hong-Ou-Mandel interference. The ring resonator provides enhanced photon generation rate, and the Sagnac loop ensures the photons travel through equal path lengths and interfere with the correct phase to enable the reversed HOM effect to take place. In the experiment, we observed a HOM dip visibility of 94.5 +- 3.3 %, indicating the photons generated by the degenerate single photon source are in a suitable state for further integration with other components for quantum applications, such as controlled-NOT gates.

  11. Dual Origin of Pairing in Nuclei

    CERN Document Server

    Idini, A; Barranco, F; Vigezzi, E; Broglia, R A

    2014-01-01

    An essentially "complete" description of the low-energy nuclear structure of the superfluid nucleus $^{120}$Sn and of its odd-$A$ neighbors is provided by the observations carried out with the help of Coulomb excitation and of one-- and of two-- particle transfer reactions, specific probes of vibrations, quasiparticle and pairing degrees of freedom respectively, and of their mutual couplings. These experimental findings are used to stringently test the predictions of a similarly "complete" description of $^{119,120,121}$Sn carried out in terms of elementary modes of excitation which, through their interweaving, melt together into effective fields, each displaying properties reflecting that of all others, there individuality resulting from the actual relative importance of each one. Its implementation is done by solving the Nambu-Gor'kov equations including, for the first time, all medium polarization effects resulting from the interweaving of quasiparticles, spin and surface vibrations, taking into account, w...

  12. Disruption, beamstrahlung, and beamstrahlung pair creation

    Energy Technology Data Exchange (ETDEWEB)

    Chen, P.

    1988-12-01

    The two major effects from the interaction of e/sup /minus//e/sup +/ beams---beamstrahlung and disruption---are reviewed, with emphasis on flat beam collisions. For the disruption effects we discuss the luminosity enhancement factor, the maximum and rms disruption angles, and the ''kink instability''. All the results are obtained from computer simulations, and scaling laws based on these are deduced whenever possible. For the beamstrahlung effects, we concentrate only on the final electron energy spectrum and the deflection angle associated with low energy particles. In addition to the generic studies on the beam-beam effects, we also list the relevant beam-beam parameters obtained from simulations on two sample designs: the TLC and the ILC. As an addendum, the newly discovered phenomenon of coherent beamstrahlung pair creation, together with the incoherent process, are discussed. 18 refs., 15 figs., 1 tab.

  13. Extending the Cooper Minimal Pair Theorem

    Institute of Scientific and Technical Information of China (English)

    张再跃

    2001-01-01

    In the study of cappable and noncappable properties of the recursively enumerable (r.e.) degrees, Lempp suggested a conjecture which asserts that for all r.e. degrees a and b, if a ≮ b then there exists an r.e. degree c such that c ≤ a and c ≮ b and c is cappable. We shall prove in this paper that this conjecture holds under the condition that a is high. Working below a high r.e. degree h, we show that for any r.e. degree b with h ≮ b, there exist r.e. degrees a0 and a1 such that a0, a1 ≮ b, a0, a1 < h, and a0 and a1 form a minimal pair.

  14. Diagonal lattices and rootless $EE_8$ pairs

    CERN Document Server

    Griess, Robert L; Lam, Ching Hung

    2011-01-01

    Let E be an integral lattice. We first discuss some general properties of an SDC lattice, i.e., a sum of two diagonal copies of E in E \\bot E. In particular, we show that its group of isometries contains a wreath product. We then specialize this study to the case of E = E_8 and provide a new and fairly natural model for those rootless lattices which are sums of a pair of EE_8-lattices. This family of lattices was classified in [7]. We prove that this set of isometry types is in bijection with the set of conjugacy classes of rootless elements in the isometry group O(E_8), i.e., those h \\in O(E_8) such that the sublattice (h - 1)E_8 contains no roots. Finally, our model gives new embeddings of several of these lattices in the Leech lattice.

  15. Holographic Vortex Pair Annihilation in Superfluid Turbulence

    CERN Document Server

    Du, Yiqiang; Tian, Yu; Zhang, Hongbao

    2014-01-01

    We make a first principles investigation of the dynamical evolution of vortex number in a two-dimensional (2D) turbulent superfluid by holography through numerically solving its highly non-trivial gravity dual. With the randomly placed vortices and antivortices prepared as initial states, we find that the temporal evolution of the vortex number can be well fit statistically by two-body decay due to the vortex pair annihilation featured relaxation process remarkably from a very early time on. In particular, subtracted by the universal offset, the power law fit indicates that our holographic turbulent superfluid exhibits an apparently different decay pattern from the superfluid recently experimented in highly oblate Bose-Einstein condensates.

  16. Stability and size of particle pairs in complex plasmas

    Energy Technology Data Exchange (ETDEWEB)

    Nosenko, V., E-mail: V.Nosenko@dlr.de [Deutsches Zentrum für Luft- und Raumfahrt, Forschungsgruppe Komplexe Plasmen, D-82234 Weßling (Germany); Max-Planck-Institut für extraterrestrische Physik, D-85741 Garching (Germany); Ivlev, A. V.; Kompaneets, R. [Max-Planck-Institut für extraterrestrische Physik, D-85741 Garching (Germany); Morfill, G. [Max-Planck-Institut für extraterrestrische Physik, D-85741 Garching (Germany); Centre for Plasma Science and Technology, BMSTU, Moscow (Russian Federation)

    2014-11-15

    Particle pairing in a complex plasma was experimentally studied with the emphasis on pair spatial extent and stability. Micron-size particles were suspended in the (pre)sheath area above the lower electrode in a capacitively coupled radio-frequency discharge in argon. They formed vertical pairs due to the ion wakes created by the flow of ions past particles. We discuss the confinement mechanism for the lower particle, resulting from a combination of the wake field and the field of non-uniform sheath. A model of particle pairs is proposed, which provides good description for the dependence of pair size and stability on experimental parameters.

  17. Finite size effects in stimulated laser pair production

    CERN Document Server

    Heinzl, Thomas; Marklund, Mattias

    2010-01-01

    We consider stimulated pair production in a strong laser background, using the language of lightcone field theory. In an infinite plane wave, we show that the lightcone momentum transfer to the pair must be a multiple of the laser frequency, which results in the usual interpretation of multi-photon production of pairs with an effective mass. In a pulse, the momentum transfer is continuous, exhibiting resonant behaviour for effective mass pair production. We show that this is completely analogous to a diffraction process, and that the fine structure of the emission rate is that of a diffraction pattern resulting from interference of the produced pairs' wavefunctions.

  18. Adiabatic Pair Creation in Heavy Ion and Laser Fields

    CERN Document Server

    Pickl, P; Pickl, Peter; Duerr, Detlef

    2006-01-01

    The planned generation of lasers and heavy ion colliders renews the hope to see electron-positron pair creation in strong classical fields (so called spontaneous pair creation). This adiabatic relativistic effect has however not been described in a unified manner. We discuss here the theory of adiabatic pair creation yielding the momentum distribution of scattered pairs in overcritical fields. Our conclusion about the possibility of adiabatic pair creation is much more positive than earlier predictions for laser fields and most importantly gives priority to optical before X-ray lasers.

  19. Scheduler for multiprocessor system switch with selective pairing

    Energy Technology Data Exchange (ETDEWEB)

    Gara, Alan; Gschwind, Michael Karl; Salapura, Valentina

    2015-01-06

    System, method and computer program product for scheduling threads in a multiprocessing system with selective pairing of processor cores for increased processing reliability. A selective pairing facility is provided that selectively connects, i.e., pairs, multiple microprocessor or processor cores to provide one highly reliable thread (or thread group). The method configures the selective pairing facility to use checking provide one highly reliable thread for high-reliability and allocate threads to corresponding processor cores indicating need for hardware checking. The method configures the selective pairing facility to provide multiple independent cores and allocate threads to corresponding processor cores indicating inherent resilience.

  20. PairWise Neighbours database: overlaps and spacers among prokaryote genomes

    Directory of Open Access Journals (Sweden)

    Garcia-Vallvé Santiago

    2009-06-01

    Full Text Available Abstract Background Although prokaryotes live in a variety of habitats and possess different metabolic and genomic complexity, they have several genomic architectural features in common. The overlapping genes are a common feature of the prokaryote genomes. The overlapping lengths tend to be short because as the overlaps become longer they have more risk of deleterious mutations. The spacers between genes tend to be short too because of the tendency to reduce the non coding DNA among prokaryotes. However they must be long enough to maintain essential regulatory signals such as the Shine-Dalgarno (SD sequence, which is responsible of an efficient translation. Description PairWise Neighbours is an interactive and intuitive database used for retrieving information about the spacers and overlapping genes among bacterial and archaeal genomes. It contains 1,956,294 gene pairs from 678 fully sequenced prokaryote genomes and is freely available at the URL http://genomes.urv.cat/pwneigh. This database provides information about the overlaps and their conservation across species. Furthermore, it allows the wide analysis of the intergenic regions providing useful information such as the location and strength of the SD sequence. Conclusion There are experiments and bioinformatic analysis that rely on correct annotations of the initiation site. Therefore, a database that studies the overlaps and spacers among prokaryotes appears to be desirable. PairWise Neighbours database permits the reliability analysis of the overlapping structures and the study of the SD presence and location among the adjacent genes, which may help to check the annotation of the initiation sites.

  1. Pairing reentrance in warm rotating $^{104}$Pd nucleus

    CERN Document Server

    Hung, N Quang; Agrawal, B K; Datar, V M; Mitra, A; Chakrabarty, D R

    2015-01-01

    Pairing reentrance phenomenon in the warm rotating $^{104}$Pd nucleus is studied within the Bardeen-Cooper-Schrieffer (BCS)-based approach (the FTBCS1). The theory takes into account the effect of quasiparticle number fluctuations on the pairing field at finite temperature and angular momentum within the pairing model plus noncollective rotation along the symmetry axis. The numerical calculations for the pairing gaps and nuclear level densities (NLD), of which an anomalous enhancement has been experimentally observed at low excitation energy $E^*$ and high angular momentum $J$, show that the pairing reentrance is seen in the behavior of pairing gap obtained within the FTBCS1 at low $E$ and high $J$. This leads to the enhancement of the FTBCS1 level densities, in good agreement with the experimental observation. This agreement indicates that the observed enhancement of the NLD might be the first experimental detection of the pairing reentrance in a finite nucleus.

  2. Molecular design of the C alpha beta interface favors specific pairing of introduced TCR alpha beta in human T cells

    NARCIS (Netherlands)

    Voss, Ralf-Holger; Willemsen, Ralph A.; Kuball, Juergen; Grabowski, Margarete; Engel, Renate; Intan, Ratna S.; Guillaume, Philippe; Romero, Pedro; Huber, Christoph; Theobald, Matthias

    2008-01-01

    A promising approach to adoptive transfer therapy of tumors is to reprogram autologous T lymphocytes by TCR gene transfer of defined Ag specificity. An obstacle, however, is the undesired pairing of introduced TCR alpha- and TCR beta-chains with the endogenous TCR chains. These events vary depending

  3. Les livres pairs d’Alfred Jarry

    Directory of Open Access Journals (Sweden)

    Julien Schuh

    2008-10-01

    Full Text Available Dans les Gestes et opinions du Dr Faustroll, pataphysicien, Alfred Jarry décrit une bibliothèque idéale, composée de 27 ouvrages qu’il nomme mystérieusement des « livres pairs ». Dans cette liste, on trouve aussi bien des œuvres canoniques du symbolisme (Mallarmé, Verlaine, Poe traduit par Baudelaire, des titres des amis de Jarry et des piliers des revues de l’époque (Rachilde, Gustave Kahn, Léon Bloy, que des ouvrages que l’on assimile davantage aux lectures enfantines (un conte de Marceline Desbordes-Valmore, les Mille et une Nuits, le théâtre de Florian ou des textes hors-catégorie (l’œuvre de Rabelais, l’évangile de Luc, les Chants de Maldoror. Beaucoup de critiques se sont interrogés sur la notion de « parité », sur l’égalité supposée entre ces ouvrages n’appartenant pas aux mêmes catégories littéraires. Mais l’intérêt de cette liste n’est pas de fournir un classement, ou d’affirmer l’équivalence de toutes les formes textuelles, comme on l’analyse souvent, en faisant de Jarry un chantre du nihilisme qui chercherait à pervertir les hiérarchies littéraires pour montrer la vacuité du sens. Au contraire, en faisant débuter le Faustroll par une liste d’ouvrages, Jarry met en place les conditions de réception de son texte, dans une posture très littéraire. L’espace délimité par la liste des auteurs pairs fonctionne comme un portrait spirituel de Jarry-littérateur, et livre le contexte selon lequel son discours doit être reçu. La bibliothèque du Dr Faustroll fixe les références que le lecteur pourra voir convoquer dans le texte, et circonscrit l’espace littéraire dans lequel peut fonctionner cet ouvrage.

  4. Mating strategies in dominant meerkats: evidence for extra-pair paternity in relation to genetic relatedness between pair mates.

    Science.gov (United States)

    Leclaire, S; Nielsen, J F; Sharp, S P; Clutton-Brock, T H

    2013-07-01

    Rates of extra-pair paternity (EPP) have frequently been associated with genetic relatedness between social mates in socially monogamous birds. However, evidence is limited in mammals. Here, we investigate whether dominant females use divorce or extra-pair paternity as a strategy to avoid the negative effects of inbreeding when paired with a related male in meerkats Suricata suricatta, a species where inbreeding depression is evident for several traits. We show that dominant breeding pairs seldom divorce, but that rates of EPP are associated with genetic similarity between mates. Although extra-pair males are no more distantly related to the female than social males, they are more heterozygous. Nevertheless, extra-pair pups are not more heterozygous than within-pair pups. Whether females benefit from EPP in terms of increased fitness of the offspring, such as enhanced survival or growth, requires further investigations. PMID:23675879

  5. CoopTFD: a repository for predicted yeast cooperative transcription factor pairs.

    Science.gov (United States)

    Wu, Wei-Sheng; Lai, Fu-Jou; Tu, Bor-Wen; Chang, Darby Tien-Hao

    2016-01-01

    In eukaryotic cells, transcriptional regulation of gene expression is usually accomplished by cooperative Transcription Factors (TFs). Therefore, knowing cooperative TFs is helpful for uncovering the mechanisms of transcriptional regulation. In yeast, many cooperative TF pairs have been predicted by various algorithms in the literature. However, until now, there is still no database which collects the predicted yeast cooperative TFs from existing algorithms. This prompts us to construct Cooperative Transcription Factors Database (CoopTFD), which has a comprehensive collection of 2622 predicted cooperative TF pairs (PCTFPs) in yeast from 17 existing algorithms. For each PCTFP, our database also provides five types of validation information: (i) the algorithms which predict this PCTFP, (ii) the publications which experimentally show that this PCTFP has physical or genetic interactions, (iii) the publications which experimentally study the biological roles of both TFs of this PCTFP, (iv) the common Gene Ontology (GO) terms of this PCTFP and (v) the common target genes of this PCTFP. Based on the provided validation information, users can judge the biological plausibility of a PCTFP of interest. We believe that CoopTFD will be a valuable resource for yeast biologists to study the combinatorial regulation of gene expression controlled by cooperative TFs.Database URL: http://cosbi.ee.ncku.edu.tw/CoopTFD/ or http://cosbi2.ee.ncku.edu.tw/CoopTFD/. PMID:27242036

  6. Observing Pair-Work Task in an English Speaking Class

    Directory of Open Access Journals (Sweden)

    Diana Achmad

    2014-01-01

    Full Text Available This paper reports on students’ pair-work interactions to develop their speaking skills in an ELT classroom which consisted of international learners. A number of 16 learners of intermediate proficiency with IELTS score band 5.5 were observed. The teacher had paired those he considered among them to be the more competent ones (hereafter, stronger with the less competent ones (hereafter, weaker; therefore, eight pairs were observed during the lesson. The task given to the students was to express ‘Agree and Disagree’ in the context of giving opinions related to social life. Based on the observations, the task was successfully implemented by six pairs; thus, the two others faced some problems. From the first pair, it was seen that the stronger student had intimated the weaker one into speaking during the task. The other pair, who was both of the same native, did not converse in English as expected and mostly used their native language to speak with one another presumably due to respect from the stronger student towards the weaker one. In situations like this, when pair-work becomes unproductive, rotating pairs is recommended to strengthen information sharing and assigning roles to avoid a student from taking over the activity from his or her pair. In conclusion, pairing international learners with mixed speaking proficiency by teachers must be conducted as effectively as possible by initially identifying their ability and learning culture to profoundly expand the students’ language resources.

  7. Pulsar Pair Cascades in Magnetic Fields with Offset Polar Caps

    Science.gov (United States)

    Harding, Alice K.; Muslimov, Alex G.

    2012-01-01

    Neutron star magnetic fields may have polar caps (PC) that are offset from the dipole axis, through field-line sweepback near the light cylinder or non-symmetric currents within the star. The effects of such offsets on electron-positron pair cascades are investigated, using simple models of dipole magnetic fields with small distortions that shift the PCs by different amounts or directions. Using a Monte Carlo pair cascade simulation, we explore the changes in the pair spectrum, multiplicity and energy flux across the PC, as well as the trends in pair flux and pair energy flux with spin-down luminosity, L(sub sd). We also give an estimate of the distribution of heating flux from returning positrons on the PC for different offsets. We find that even modest offsets can produce significant increases in pair multiplicity, especially for pulsars that are near or beyond the pair death lines for centered PCs, primarily because of higher accelerating fields. Pair spectra cover several decades in energy, with the spectral range of millisecond pulsars (MSPs) two orders of magnitude higher than for normal pulsars, and PC offsets allow significant extension of all spectra to lower pair energies. We find that the total PC pair luminosity L(sub pair) is proportional to L(sub sd), with L(sub pair) approximates 10(exp -3) L(sub sd) for normal pulsars and L(sub pair) approximates 10(exp -2) L(sub sd) for MSPs. Remarkably, the total PC heating luminosity for even large offsets increases by less than a factor of two, even though the PC area increases by much larger factors, because most of the heating occurs near the magnetic axis.

  8. Identifying set-wise differential co-expression in gene expression microarray data

    Directory of Open Access Journals (Sweden)

    Kim Jihun

    2009-04-01

    Full Text Available Abstract Background Previous differential coexpression analyses focused on identification of differentially coexpressed gene pairs, revealing many insightful biological hypotheses. However, this method could not detect coexpression relationships between pairs of gene sets. Considering the success of many set-wise analysis methods for microarray data, a coexpression analysis based on gene sets may elucidate underlying biological processes provoked by the conditional changes. Here, we propose a differentially coexpressed gene sets (dCoxS algorithm that identifies the differentially coexpressed gene set pairs between conditions. Results dCoxS is a two-step analysis method. In each condition, dCoxS measures the interaction score (IS, which represents the expression similarity between two gene sets using Renyi relative entropy. When estimating the relative entropy, multivariate kernel density estimation was used to model gene-gene correlation structure. Statistical tests for the conditional difference between the ISs determined the significance of differential coexpression of the gene set pair. Simulation studies supported that the IS is a representative measure of similarity between gene expression matrices. Single gene coexpression analysis of two publicly available microarray datasets detected no significant results. However, the dCoxS analysis of the datasets revealed differentially coexpressed gene set pairs related to the biological conditions of the datasets. Conclusion dCoxS identified differentially coexpressed gene set pairs not found by single gene analysis. The results indicate that set-wise differential coexpression analysis is useful for understanding biological processes induced by conditional changes.

  9. Top Quark Pair Production in ATLAS

    CERN Document Server

    Gellerstedt, Karl

    2012-10-05

    The Large Hadron Collider (LHC) at the international particle physics laboratory CERN in Switzerland is currently the most powerful particle accelerator on earth. This thesis presents analyses of proton-proton collisions at the energy sqrt{s} = 7 TeV, recorded by ATLAS, one of the detectors at the LHC. The goal of the LHC and its detectors is to find new phenomena not described by the Standard Model (SM) of particle physics. The top quark is the heaviest known elementary particle and it is produced in very large numbers at the LHC. Measuring the production cross-section of top pairs (ttbar) is important for many reasons: for validating the strong production mechanism of the SM, for commissioning and calibration of the detector and analysis software and because several scenarios for physics beyond the SM predict changes to the ttbar production cross-section. Five different measurements of the ttbar cross-section will be presented in this thesis. The first three are measurements of the total cross-section, the ...

  10. Arbitrated Quantum Signature protocol using EPR pairs

    Directory of Open Access Journals (Sweden)

    Jun Zhang

    2012-11-01

    Full Text Available Arbitrated signature provides that the signatory signs a message with his private key by quantum cryptography, while the signature receiver verifies the signature with the arbitrator’s assistance. In this work, security analysis was given to the arbitrated quantum signature (AQS and results showed that the receiver Bob and the attacker can forge the signature. Then this paper gives a new quantum one-time pads encryption method, which is suit for the quantum signature. At last, a new AQS protocol using Einstein-Podoisky-Rosen (EPR pairs is proposed. By using of  quantum key distribution (QKD and new quantum one-time pads, the new scheme can resist Shor’s attack. The new scheme has following advantages: (1 The scheme reduces the complexity of implementation and provides a higher efficiency in transmission; (2 Compares with some AQS schemes, the scheme can avoid being disavowed by the receiver; (3 Compares with other AQS schemes, the scheme also guarantees the arbitrator cannot forge the signature and it also ensure the receiver and other attacker cannot forge the signature.

  11. Investigation of tau pair production at PETRA

    International Nuclear Information System (INIS)

    The reaction e+e- -> tau+tau- has been measured at center of mass energies around 34 GeV. The selection is sensitive to 93% of the tau pair decays, thus making possible a high identification efficiency of proportional 70% over a large solid angle. The total cross section has been measured to Rsub(tau) = sigmasub(tautau)/sigmasub(point) = .94 +- .06(stat.) +- .06(syst.). In the differential cross section a charge asymmetry of Asub(tau) = (-(9.0 +- 6.6)% was observed, corresponding to a tau axial vector coupling to the weak neutral current of asub(tau) = -.94 +- 0.69. Moreover, final states from the decays tau -> πν, tau -> eνν, and tau -> μνν have been isolated and branching ratios into these channels have been determined. From the inclusive momentum spectra of the observed decay products (including the channel tau -> rhoν) the forward backward asymmetry of tau polarization has been determined to Asub(p,tau) = -(1 +- 22)% which corresponds to vsub(tau) = -.1 +- 2.9. Tests on factorization are discussed. (orig.)

  12. An Identity Based Aggregate Signature from Pairings

    Directory of Open Access Journals (Sweden)

    Yike Yu

    2011-04-01

    Full Text Available An aggregate signature is a useful digital signature that supports aggregation: Given n signatures on n distinct messages from n distinct users, aggregate signature scheme is possible to aggregate all these signature into a single short signature. This single signature, along with the n original messages will convince any verifier that the n users did indeed sign the n original messages respectively (i.e., for i=1,...,n user i signed message  mi. In this paper, we propose an identity based aggregate signature scheme which requires constant pairing operations in the verification and the size of aggregate signature is independent of the number of signers. We prove that the proposed signature scheme is secure against existential forgery under adaptively chosen message and identity attack in the random oracle model assuming the intractability of the computational Diffie-Hellman problem.

  13. AGT, Burge pairs and minimal models

    CERN Document Server

    Bershtein, M

    2014-01-01

    We consider the AGT correspondence in the context of the conformal field theory M^{p, p'} x M^H, where M^{p, p'} is the minimal model based on the Virasoro algebra V^{p, p'} labeled by two co-prime integers {p, p'}, 1 < p < p', and M^H is the free boson theory based on the Heisenberg algebra H. Using Nekrasov's instanton partition functions without modification to compute conformal blocks in M^{p, p'} x M^H leads to ill-defined or incorrect expressions. Let B^{p, p', H}_n be a conformal block in M^{p, p'} x M^H, with n consecutive channels \\chi_{\\i}, \\i = 1, ..., n, and let \\chi_{\\i} carry states from H^{p, p'}_{r_{\\i}, s_{\\i}} x F, where H^{p, p'}_{r_{\\i}, s_{\\i}} is an irreducible highest-weight V^{p, p'}-representation, labeled by two integers {r_{\\i}, s_{\\i}}, 0 < r_{\\i} < p, 0 < s_{\\i} < p', and F is the Fock space of H. We show that restricting the states that flow in \\chi_{\\i}, \\i = 1, ..., n, to states labeled by partition pairs {Y_1^{\\i}, Y_2^{\\i}} that satisfy Y^{\\i, T}_{2, \\sigma}...

  14. Structures and Energetics of Four Adjacent G·U Pairs That Stabilize an RNA Helix.

    Science.gov (United States)

    Gu, Xiaobo; Mooers, Blaine H M; Thomas, Leonard M; Malone, Joshua; Harris, Steven; Schroeder, Susan J

    2015-10-22

    Consecutive G·U base pairs inside RNA helices can be destabilizing, while those at the ends of helices are thermodynamically stabilizing. To determine if this paradox could be explained by differences in base stacking, we determined the high-resolution (1.32 Å) crystal structure of (5'-GGUGGCUGUU-3')2 and studied three sequences with four consecutive terminal G·U pairs by NMR spectroscopy. In the crystal structure of (5'-GGUGGCUGUU-3')2, the helix is overwound but retains the overall features of A-form RNA. The penultimate base steps at each end of the helix have high base overlap and contribute to the unexpectedly favorable energetic contribution for the 5'-GU-3'/3'-UG-5' motif in this helix position. The balance of base stacking and helical twist contributes to the positional dependence of G·U pair stabilities. The energetic stabilities and similarity to A-form RNA helices suggest that consecutive G·U pairs would be recognized by RNA helix binding proteins, such as Dicer and Ago. Thus, these results will aid future searches for target sites of small RNAs in gene regulation. PMID:26425937

  15. ssDNA Pairing Accuracy Increases When Abasic Sites Divide Nucleotides into Small Groups.

    Directory of Open Access Journals (Sweden)

    Alexandra Peacock-Villada

    Full Text Available Accurate sequence dependent pairing of single-stranded DNA (ssDNA molecules plays an important role in gene chips, DNA origami, and polymerase chain reactions. In many assays accurate pairing depends on mismatched sequences melting at lower temperatures than matched sequences; however, for sequences longer than ~10 nucleotides, single mismatches and correct matches have melting temperature differences of less than 3°C. We demonstrate that appropriately grouping of 35 bases in ssDNA using abasic sites increases the difference between the melting temperature of correct bases and the melting temperature of mismatched base pairings. Importantly, in the presence of appropriately spaced abasic sites mismatches near one end of a long dsDNA destabilize the annealing at the other end much more effectively than in systems without the abasic sites, suggesting that the dsDNA melts more uniformly in the presence of appropriately spaced abasic sites. In sum, the presence of appropriately spaced abasic sites allows temperature to more accurately discriminate correct base pairings from incorrect ones.

  16. Genome divergence during evolutionary diversification as revealed in replicate lake-stream stickleback population pairs.

    Science.gov (United States)

    Roesti, Marius; Hendry, Andrew P; Salzburger, Walter; Berner, Daniel

    2012-06-01

    Evolutionary diversification is often initiated by adaptive divergence between populations occupying ecologically distinct environments while still exchanging genes. The genetic foundations of this divergence process are largely unknown and are here explored through genome scans in multiple independent lake-stream population pairs of threespine stickleback. We find that across the pairs, overall genomic divergence is associated with the magnitude of divergence in phenotypes known to be under divergent selection. Along this same axis of increasing diversification, genomic divergence becomes increasingly biased towards the centre of chromosomes as opposed to the peripheries. We explain this pattern by within-chromosome variation in the physical extent of hitchhiking, as recombination is greatly reduced in chromosome centres. Correcting for this effect suggests that a great number of genes distributed widely across the genome are involved in the divergence into lake vs. stream habitats. Analyzing additional allopatric population pairs, however, reveals that strong divergence in some genomic regions has been driven by selection unrelated to lake-stream ecology. Our study highlights a major contribution of large-scale variation in recombination rate to generating heterogeneous genomic divergence and indicates that elucidating the genetic basis of adaptive divergence might be more challenging than currently recognized.

  17. Genome divergence during evolutionary diversification as revealed in replicate lake-stream stickleback population pairs.

    Science.gov (United States)

    Roesti, Marius; Hendry, Andrew P; Salzburger, Walter; Berner, Daniel

    2012-06-01

    Evolutionary diversification is often initiated by adaptive divergence between populations occupying ecologically distinct environments while still exchanging genes. The genetic foundations of this divergence process are largely unknown and are here explored through genome scans in multiple independent lake-stream population pairs of threespine stickleback. We find that across the pairs, overall genomic divergence is associated with the magnitude of divergence in phenotypes known to be under divergent selection. Along this same axis of increasing diversification, genomic divergence becomes increasingly biased towards the centre of chromosomes as opposed to the peripheries. We explain this pattern by within-chromosome variation in the physical extent of hitchhiking, as recombination is greatly reduced in chromosome centres. Correcting for this effect suggests that a great number of genes distributed widely across the genome are involved in the divergence into lake vs. stream habitats. Analyzing additional allopatric population pairs, however, reveals that strong divergence in some genomic regions has been driven by selection unrelated to lake-stream ecology. Our study highlights a major contribution of large-scale variation in recombination rate to generating heterogeneous genomic divergence and indicates that elucidating the genetic basis of adaptive divergence might be more challenging than currently recognized. PMID:22384978

  18. Conditional targeting of Ispd using paired Cas9 nickase and a single DNA template in mice

    Directory of Open Access Journals (Sweden)

    Angus Yiu-fai Lee

    2014-01-01

    Full Text Available CRISPR/Cas9 technology is a highly promising genome editing tool in the mouse, potentially overcoming the costs and time required for more traditional gene targeting methods in embryonic stem (ES cells. Recently, compared to the wildtype nuclease, paired Cas9 nickase (Cas9n combined with single guide RNA (sgRNA molecules has been found to enhance the specificity of genome editing while reducing off-target effects. Paired Cas9n has been shown to be as efficient as Cas9 for generating insertion and deletion (indel mutations by non-homologous end joining and targeted deletion in the genome. However, an efficient and reliable approach to the insertion of loxP sites flanking critical exon(s to create a conditional allele of a target gene remains an elusive goal. In this study, we microinjected Cas9n RNA with sgRNAs together with a single DNA template encoding two loxP sites flanking (floxing exon 2 of the isoprenoid synthase containing domain (Ispd into the pronucleus and cytoplasm of C57BL/6NCr one-cell stage zygotes. After surgical transfer, one F0 mouse expressing a conditional allele was produced (at a frequency of ∼8% of live pups born. The floxed allele was transmitted through the germline to F1 progeny, and could be successfully recombined using Cre recombinase. This study indicates that conditional targeting can be accomplished effectively using paired Cas9n and a single DNA template.

  19. Paired teaching for faculty professional development in teaching

    CERN Document Server

    Stang, Jared B

    2015-01-01

    Paired (or co-)teaching is an arrangement in which two faculty are collaboratively responsible for all aspects of teaching a course. By pairing an instructor experienced in research-based instructional strategies (RBIS) with an instructor with little or no experience in RBIS, paired teaching can be used to promote the adoption of RBIS. Using data from post-course interviews with the novice instructors of four such arrangements, we seek to understand the factors that make for effective professional development in teaching via paired teaching. Learning about teaching for the novice instructors was found to be mediated both by the approach of the novice instructor to the paired teaching and the previous teaching experience of the novice instructor. Additionally, the structure of the pair-taught course and the sequence of teaching assignments for the novice instructor both play roles in lowering the barrier to novice instructors adopting RBIS.

  20. Spin polarization transfer by the radical pair mechanism

    Energy Technology Data Exchange (ETDEWEB)

    Zarea, Mehdi, E-mail: m-zarea@northwestern.edu; Ratner, Mark A.; Wasielewski, Michael R. [Department of Chemistry and Argonne-Northwestern Solar Energy Research (ANSER) Center, Northwestern University, Evanston, Illinois 60208-3113 (United States)

    2015-08-07

    In a three-site representation, we study a spin polarization transfer from radical pair spins to a nearby electron or nuclear spin. The quantum dynamics of the radical pair spins is governed by a constant exchange interaction between the radical pair spins which have different Zeeman frequencies. Radical pair spins can recombine to the singlet ground state or to lower energy triplet states. It is then shown that the coherent dynamics of the radical pair induces spin polarization on the nearby third spin in the presence of a magnetic field. The spin polarization transfer depends on the difference between Zeeman frequencies, the singlet and triplet recombination rates, and on the exchange and dipole-dipole interactions between the different spins. In particular, the sign of the polarization depends on the exchange coupling between radical pair spins and also on the difference between singlet and triplet recombination rate constants.

  1. Diffraction of collinear correlated photon pairs by an ultrasonic wave

    CERN Document Server

    Kwiek, Piotr

    2013-01-01

    The phenomenon of collinear photon pairs diffraction by an ultrasonic wave is investigated for Bragg incidence. A BBO crystal was used for producing collinear correlated photon pairs via type-I spontaneous parametric down-conversion. The experimental setup for diffraction of collinear correlated photon pairs was tested based on Malus' law for pairs of photons. The obtained results do not support the L. B. Deng's theory of 2012, presented in his work entitled "Diffraction of entangled photon pairs by ultrasonic waves" [Front. Phys. 7, 239 (2012)] . An alternative simple theoretical description of interaction of collinear photon pairs with ultrasonic waves is shown in the present paper which reveals very good agreement with corresponding experimental data.

  2. Classes of source pairs in interference and diffraction

    CERN Document Server

    Castaneda, R

    2003-01-01

    A description of interference and diffraction based on the concept of class of source pairs is presented. It is the set of pairs of sources whose contributions to the interference or diffraction patterns exhibit the same phase difference. Each class of source pairs provides a specific cosine-like modulation on the intensity distribution of pattern, in such a way that the set provides an expansion of the intensity distribution of the pattern in an orthogonal basis. From this point of view, the classes of source pairs are the effective elementary sources for those intensity distributions. The characteristics of the classes of source pairs can be accurately determined by Fourier transforming the intensity distribution of the patterns. The central value of this Fourier spectrum is related to the number of individual sources. The remaining values will provide two crucial descriptors of the classes: their positions on the Fourier transform domain will be corresponding to the separation vector of the class of pairs ...

  3. Analysis of food pairing in regional cuisines of India

    CERN Document Server

    Jain, Anupam; Bagler, Ganesh

    2015-01-01

    Any national cuisine is a sum total of its variety of regional cuisines, which are the cultural and historical identifiers of their respective regions. India is home to a number of regional cuisines that showcase its culinary diversity. Here, we study recipes from eight different regional cuisines of India spanning various geographies and climates. We investigate the phenomenon of food pairing which examines compatibility of two ingredients in a recipe in terms of their shared flavor compounds. Food pairing was enumerated at the level of cuisine, recipes as well as ingredient pairs by quantifying flavor sharing between pairs of ingredients. Our results indicate that each regional cuisine follows negative food pairing pattern; more the extent of flavor sharing between two ingredients, lesser their co-occurrence in that cuisine. We find that frequency of ingredient usage is central in rendering the characteristic food pairing in each of these cuisines. Spice and dairy emerged as the most significant ingredient ...

  4. Probing mixed-spin pairing in heavy nuclei

    CERN Document Server

    Bulthuis, Brendan

    2016-01-01

    The nature of the nuclear pairing condensate is an active topic of investigation, especially as regards its neutron-proton versus identical-particle character, which manifests as the difference between spin-singlet and spin-triplet pairing. In this work, we probe the recently proposed mixed-spin pairing condensates, using a phenomenological Hamiltonian and Hartree-Fock-Bogoliubov theory along with the gradient method. In addition to improving the solution of the many-body problem, we have calculated a series of physical quantities and examined the robustness of the mixed-spin pairing state as the input Hamiltonian is modified. Overall, we find that even though the mixed-spin correlation energy is suppressed in comparison to earlier work, the new pairing behavior persists. We also discuss the possibility of directly probing the mixed-spin pairing phase.

  5. Pair Cascades and Deathlines in Offset Magnetic Dipole Fields

    Science.gov (United States)

    Harding, Alice; Muslimov, Alex

    2010-01-01

    We investigate electron-positron pair cascades in a dipole magnetic field whose axis is offset from the neutron star center. In such a field geometry, the polar cap is displaced from the neutron star symmetry axis and the field line radius of curvature is modified. Using the modified parallel electric field near the polar cap of an offset dipole, we simulate pair cascades to determine the pair deathlines and pair multiplicities as a function of the offset parameter. We find that the pair multiplicity can change dramatically with a modest offset, with a significant increase on one side of the polar cap. Lower pair deathlines allow a larger fraction of the pulsar population, that include old and millisecond pulsars, to produce cascades with high multiplicity.

  6. Derivative chromosome 1 and GLUT1 deficiency syndrome in a sibling pair

    Directory of Open Access Journals (Sweden)

    Akarsu Nurten

    2010-05-01

    Full Text Available Abstract Background Genomic imbalances constitute a major cause of congenital and developmental abnormalities. GLUT1 deficiency syndrome is caused by various de novo mutations in the facilitated human glucose transporter 1 gene (1p34.2 and patients with this syndrome have been diagnosed with hypoglycorrhachia, mental and developmental delay, microcephaly and seizures. Furthermore, 1q terminal deletions have been submitted in the recent reports and the absence of corpus callosum has been related to the deletion between C1orf100 and C1orf121 in 1q44. Results This study reports on a sibling pair with developmental delay, mental retardation, microcephaly, hypotonia, epilepsy, facial dysmorphism, ataxia and impaired speech. Chromosome analysis revealed a derivative chromosome 1 in both patients. FISH and MCB analysis showed two interstitial deletions at 1p34.2 and 1q44. SNP array and array-CGH analysis also determined the sizes of deletions detailed. The deleted region on 1p34.2 encompasses 33 genes, among which is GLUT1 gene (SLC2A1. However, the deleted region on 1q44 includes 59 genes and distal-proximal breakpoints were located in the ZNF672 gene and SMYD3 gene, respectively. Conclusion Haploinsufficiency of GLUT1 leads to GLUT1 deficiency syndrome, consistent with the phenotype in patients of this study. Conversely, in the deleted region on 1q44, none of the genes are related to findings in these patients. Additionally, the results confirm previous reports on that corpus callosal development may depend on the critical gene(s lying in 1q44 proximal to the SMYD3 gene.

  7. A CA(+) pair adjacent to a sheared GA or AA pair stabilizes size-symmetric RNA internal loops.

    Science.gov (United States)

    Chen, Gang; Kennedy, Scott D; Turner, Douglas H

    2009-06-23

    RNA internal loops are often important sites for folding and function. Residues in internal loops can have pKa values shifted close to neutral pH because of the local structural environment. A series of RNA internal loops were studied at different pH by UV absorbance versus temperature melting experiments and imino proton nuclear magnetic resonance (NMR). A stabilizing CA pair forms at pH 7 in the CG/AA and CA/AA nearest neighbors when the CA pair is the first noncanonical pair (loop-terminal pair) in 3 x 3 nucleotide and larger size-symmetric internal loops. These CG/AA and CA/AA nearest neighbors, with CA adjacent to a closing Watson-Crick pair, are further stabilized when the pH is lowered from 7 to 5.5. The results are consistent with a significantly larger fraction (from approximately 20% at pH 7 to approximately 90% at pH 5.5) of adenines being protonated at the N1 position to form stabilizing wobble CA+ pairs adjacent to a sheared GA or AA pair. The noncanonical pair adjacent to the GA pair in CG/AA can either stabilize or destabilize the loop, consistent with the sequence-dependent thermodynamics of GA pairs. No significant pH-dependent stabilization is found for most of the other nearest neighbor combinations involving CA pairs (e.g., CA/AG and AG/CA), which is consistent with the formation of various nonwobble pairs observed in different local sequence contexts in crystal and NMR structures. A revised free-energy model, including stabilization by wobble CA+ pairs, is derived for predicting stabilities of medium-size RNA internal loops. PMID:19485416

  8. EVOG: a database for evolutionary analysis of overlapping genes

    OpenAIRE

    Kim, Dae-Soo; Cho, Chi-Young; Huh, Jae-Won; Kim, Heui-Soo; Cho, Hwan-Gue

    2008-01-01

    Overlapping genes are defined as a pair of genes whose transcripts are overlapped. Recently, many cases of overlapped genes have been investigated in various eukaryotic organisms; however, their origin and transcriptional control mechanism has not yet been clearly determined. In this study, we implemented evolutionary visualizer for overlapping genes (EVOG), a Web-based DB with a novel visualization interface, to investigate the evolutionary relationship between overlapping genes. Using this ...

  9. Single pairs of time-bin entangled photons

    CERN Document Server

    Versteegh, Marijn A M; Berg, Aafke A van den; Juska, Gediminas; Dimastrodonato, Valeria; Gocalinska, Agnieszka; Pelucchi, Emanuele; Zwiller, Val

    2015-01-01

    Time-bin entangled photons are ideal for long-distance quantum communication via optical fibers. Here we present a source where, even at high creation rates, each excitation pulse generates at most one time-bin entangled pair. This is important for the accuracy and security of quantum communication. Our site-controlled quantum dot generates single polarization-entangled photon pairs, which are then converted, without loss of entanglement strength, into single time-bin entangled photon pairs.

  10. Particle vs. pair condensation in attractive Bose liquids

    OpenAIRE

    Nozières, P.; Saint James, D.

    1982-01-01

    The competition between particle and pair condensation in Bose liquids is studied using a mean field variational ground state that comprises both the Bogoliubov approximation for weakly interacting Bose gases and the Valatin-Butler pair state. We first consider structureless bosons, disregarding the fact that an attractive gas will necessarily collapse. We show that a pair state occurs only if the attraction is strong enough to bind two bosons together. The limit of low densities is treated e...

  11. Paired structures and other opposite-based models

    DEFF Research Database (Denmark)

    Rodríguez, J. Tinguaro; Franco, Camilo; Gómez, Daniel;

    2015-01-01

    In this paper we present a new class of fuzzy sets, paired fuzzy sets, that tries to overcome any conflict between families of fuzzy sets that share a main characteristic: that they are generated from two basic opposite fuzzy sets. Hence, the first issue is to formalize the notion of opposition, ...... as a particular paired structure when the classical fuzzy negation is considered; on the other hand, the relationship of this model with bipolarity is reconsidered from our paired view....

  12. Impact of pairing correlations on the orientation of the nuclear

    OpenAIRE

    Zhao, P. W.; Zhang, S.Q.; Meng, J

    2015-01-01

    For the first time, the tilted axis cranking covariant density functional theory with pairing correlations has been formulated and implemented in a fully self-consistent and microscopic way to investigate the evolution of the spin axis and the pairing effects in rotating triaxial nuclei. The measured energy spectrum and transition probabilities for the Nd-135 yrast band are reproduced well without any ad hoc renormalization factors when pairing effects are taken into account. A transition fro...

  13. Compression of Soliton Pairs in Dispersion-Decreasing Fibres

    Institute of Scientific and Technical Information of China (English)

    CUI Hu; XU Wen-Cheng; LIU Song-Hao

    2004-01-01

    @@ The compression of soliton pairs in fibres with decreasing dispersion is studied. The results show that generation of high-quality stable pedestal-free pulses is strongly affected by the interaction between soliton pairs. The initial phase difference between two solitons can modify soliton interaction and can make the neighbouring solitons never collide periodically. The soliton pairs can be compressed selectively so that one of the two solitons can achieve enhanced compression by controlling the initial phase difference.

  14. Modification of pion pairs in nuclear matter

    International Nuclear Information System (INIS)

    In this work the quasifree photoproduction of pion pairs on bound nucleons is analyzed for the solid targets carbon, calcium and lead. These measurements allow an isospin dependent determination of the in medium properties of pion pairs. The invariant mass distributions showed a shift in strength towards the threshold region with increasing atomic number of the targets in case of an isoscalar ππ meson system. According to theoretical predictions this effect was interpreted as a positive signature of a partial restoration of chiral symmetry. A pioneering experiment with photon beams was performed by the TAPS collaboration at the accelerator facility MAMI-B in Mainz in 1995. This measurement observed an invariant mass shift of the isoscalar π0π0 channel with increasing atomic number. In the π±π0 channel this effect was not observed. This observation confirmed the former experiments, since final state interactions of the pions would affect in first order both isospin channels in a similar way. Due to the poor statistics, the significance of the data was however limited. The experiment described in this work reached a much higher statistical significance, allowing a review of the old data and a study of the dependence of the signal from parameters like the momenta of the ππ system or the single pions. In this experiment, the TAPS detector was used as a forward wall in combination with the Crystal Ball detector to achieve a 4π solid angle coverage for photon detection at the MAMI accelerator facility. The new readout electronics for the BaF2 crystals was used for the first time. The new data analysis confirms the previously measured and published data. However, the shift of the invariant π0π0 mass to the threshold region is less pronounced than in the published data. By performing cuts on the individual pion momenta, resulting in a maximum mean free path of the pions, the shift towards lower masses is enhanced. BUU transport calculations can not describe the

  15. Stereo Pair, Salt Lake City, Utah

    Science.gov (United States)

    2002-01-01

    The 2002 Winter Olympics are hosted by Salt Lake City at several venues within the city, in nearby cities, and within the adjacent Wasatch Mountains. This image pair provides a stereoscopic map view of north central Utah that includes all of these Olympic sites. In the south, next to Utah Lake, Provo hosts the ice hockey competition. In the north, northeast of the Great Salt Lake, Ogden hosts curling and the nearby Snowbasin ski area hosts the downhill events. In between, southeast of the Great Salt Lake, Salt Lake City hosts the Olympic Village and the various skating events. Further east, across the Wasatch Mountains, the Park City ski resort hosts the bobsled, ski jumping, and snowboarding events. The Winter Olympics are always hosted in mountainous terrain. This view shows the dramatic landscape that makes the Salt Lake City region a world-class center for winter sports.This stereoscopic image was generated by draping a Landsat satellite image over a Shuttle Radar Topography Mission digital elevation model. Two differing perspectives were then calculated, one for each eye. They can be seen in 3-D by viewing the left image with the right eye and the right image with the left eye (cross-eyed viewing or by downloading and printing the image pair and viewing them with a stereoscope. When stereoscopically merged, the result is a vertically exaggerated view of Earth's surface in its full three dimensions.Landsat has been providing visible and infrared views of the Earth since 1972. SRTM elevation data matches the 30-meter (98-foot) resolution of most Landsat images and will substantially help in analyzing the large and growing Landsat image archive, managed by the U.S. Geological Survey (USGS).Elevation data used in this image was acquired by the Shuttle Radar Topography Mission (SRTM) aboard the Space Shuttle Endeavour, launched on Feb. 11, 2000. SRTM used the same radar instrument that comprised the Spaceborne Imaging Radar-C/X-Band Synthetic Aperture Radar (SIR

  16. On the random sampling of pairs, with pedestrian examples

    OpenAIRE

    Arratia, Richard; DeSalvo, Stephen

    2015-01-01

    Suppose one desires to randomly sample a pair of objects such as socks, hoping to get a matching pair. Even in the simplest situation for sampling, which is sampling with replacement, the innocent phrase "the distribution of the color of a matching pair" is ambiguous. One interpretation is that we condition on the event of getting a match between two random socks; this corresponds to sampling two at a time, over and over without memory, until a matching pair is found. A second interpretation ...

  17. Efficient Tate pairing computation using double-base chains

    Institute of Scientific and Technical Information of China (English)

    ZHAO ChangAn; ZHANG FangGuo; HUANG JiWu

    2008-01-01

    Pairing-based cryptosystems have developed very fast in the last few years. The effi-ciencies of these cryptosystems depend on the computation of the bilinear pairings. In this paper, a new efficient algorithm based on double-base chains for computing the Tate pairing is proposed for odd characteristic p > 3. The inherent sparseness of double-base number system reduces the computational cost for computing the Tate pairing evidently. The new algorithm is 9% faster than the previous fastest method for the embedding degree k = 6.

  18. Excluded volume effect enhances the homology pairing of model chromosomes

    CERN Document Server

    Takamiya, Kazunori; Isami, Shuhei; Nishimori, Hiraku; Awazu, Akinori

    2015-01-01

    To investigate the structural dynamics of the homology pairing of polymers, we mod- eled the scenario of homologous chromosome pairings during meiosis in Schizosaccharomyces pombe, one of the simplest model organisms of eukaryotes. We consider a simple model consist- ing of pairs of homologous polymers with the same structures that are confined in a cylindrical container, which represents the local parts of chromosomes contained in an elongated nucleus of S. pombe. Brownian dynamics simulations of this model showed that the excluded volume effects among non-homological chromosomes and the transitional dynamics of nuclear shape serve to enhance the pairing of homologous chromosomes.

  19. Pairing theory of high Tc and low Tc superconductors

    Science.gov (United States)

    Sang, Boo Nam

    1994-09-01

    New solutions for Tc, the order parameter, and the density of states are obtained, based on the fact that pairs are formed within the pairing interaction range, TD (Debye), via the BCS pairing theory (not the BCS results). They are valiid for all ify = {T D}/{πT c}, and are applicable to low Tc (LTC) and high Tc (HTS) superconductors. The order parameter variation with y is shown to account for all features of HTS. A new density of states via the zero order parameter outside the pairing interaction range is found to account for low energy states observed in HTS. For large y (LTS), the BCS results are reproduced.

  20. A Bell pair in a generic random matrix environment

    CERN Document Server

    Pineda, C; Pineda, Carlos; Seligman, Thomas H.

    2006-01-01

    Two non-interacting qubits are coupled to an environment. Both coupling and environment are represented by random matrix ensembles. The initial state of the pair is a Bell state, though we also consider arbitrary pure states. Decoherence of the pair is evaluated analytically in terms of purity; Monte Carlo calculations confirm these results and also yield the concurrence of the pair. Entanglement within the pair accelerates decoherence. Numerics display the relation between concurrence and purity known for Werner states, allowing us to give a formula for concurrence decay.

  1. Bell pair in a generic random matrix environment

    Science.gov (United States)

    Pineda, Carlos; Seligman, Thomas H.

    2007-01-01

    Two noninteracting qubits are coupled to an environment. Both coupling and environment are chosen as random matrices to obtain generic results. The initial state of the pair ranges from a Bell state to a product state. Decoherence of the pair is evaluated analytically in terms of purity; Monte Carlo calculations confirm these results and also yield concurrence of the pair. Entanglement within the pair accelerates decoherence. Numerics displays the relation between concurrence and purity known for Werner states. A closed albeit heuristic formula for concurrence decay ensues.

  2. DSAM lifetime measurements for the chiral pair in 194Tl

    International Nuclear Information System (INIS)

    Most important for the identification of chiral symmetry in atomic nuclei is to establish a pair of bands that are near-degenerate in energy, but also in B(M1) and B(E2) transition probabilities. Dedicated lifetime measurements were performed for four bands of 194Tl, including the pair of four-quasiparticle chiral bands with close near-degeneracy, considered as a prime candidate for best chiral symmetry pair. The lifetime measurements confirm the excellent near-degeneracy in this pair and indicate that a third band may be involved in the chiral symmetry scenario. (orig.)

  3. Mated Fingerprint Card Pairs (Volumes 1-5)

    Science.gov (United States)

    NIST Mated Fingerprint Card Pairs (Volumes 1-5) (PC database for purchase)   The NIST database of mated fingerprint card pairs (Special Database 9) consists of multiple volumes. Currently five volumes have been released. Each volume will be a 3-disk set with each CD-ROM containing 90 mated card pairs of segmented 8-bit gray scale fingerprint images (900 fingerprint image pairs per CD-ROM). A newer version of the compression/decompression software on the CDROM can be found at the website http://www.nist.gov/itl/iad/ig/nigos.cfm as part of the NBIS package.

  4. On extensions of wavelet systems to dual pairs of frames

    DEFF Research Database (Denmark)

    Christensen, Ole; Kim, Hong Oh; Kim, Rae Young

    2015-01-01

    It is an open problem whether any pair of Bessel sequences with wavelet structure can be extended to a pair of dual frames by adding a pair of singly generated wavelet systems. We consider the particular case where the given wavelet systems are generated by the multiscale setup with trigonometric...... masks and provide a positive answer under extra assumptions. We also identify a number of conditions that are necessary for the extension to dual (multi-) wavelet frames with any number of generators, and show that they imply that an extension with two pairs of wavelet systems is possible. Along the way...

  5. Nucleon-pair approximation to the nuclear shell model

    Energy Technology Data Exchange (ETDEWEB)

    Zhao, Y.M., E-mail: ymzhao@sjtu.edu.cn [Department of Physics and Astronomy, Shanghai Jiao Tong University, Shanghai 200240 (China); Arima, A. [Department of Physics and Astronomy, Shanghai Jiao Tong University, Shanghai 200240 (China); Musashi Gakuen, 1-26-1 Toyotamakami Nerima-ku, Tokyo 176-8533 (Japan)

    2014-12-01

    Atomic nuclei are complex systems of nucleons–protons and neutrons. Nucleons interact with each other via an attractive and short-range force. This feature of the interaction leads to a pattern of dominantly monopole and quadrupole correlations between like particles (i.e., proton–proton and neutron–neutron correlations) in low-lying states of atomic nuclei. As a consequence, among dozens or even hundreds of possible types of nucleon pairs, very few nucleon pairs such as proton and neutron pairs with spin zero, two (in some cases spin four), and occasionally isoscalar spin-aligned proton–neutron pairs, play important roles in low-energy nuclear structure. The nucleon-pair approximation therefore provides us with an efficient truncation scheme of the full shell model configurations which are otherwise too large to handle for medium and heavy nuclei in foreseeable future. Furthermore, the nucleon-pair approximation leads to simple pictures in physics, as the dimension of nucleon-pair subspace is always small. The present paper aims at a sound review of its history, formulation, validity, applications, as well as its link to previous approaches, with the focus on the new developments in the last two decades. The applicability of the nucleon-pair approximation and numerical calculations of low-lying states for realistic atomic nuclei are demonstrated with examples. Applications of pair approximations to other problems are also discussed.

  6. Mate preference in wild and domesticated (game-farm) mallards: II. Pairing success

    Science.gov (United States)

    Cheng, K.M.; Shoffner, R.N.; Phillips, R.E.; Lee, F.B.

    1979-01-01

    Experiments were designed to determine whether assortative mating occurs in wild and game-farm mallard strains (Anas platyrhynchos). Mallard males of either strain raised with females of their own strain courted females of their own strain more than females of the opposite strain, and these males were only successful in pairing with females of their own strain. Males raised with females of the opposite strain courted wild and game-farm females with equal intensity. They were successful in pairing with females of either strain. While this study does not settle the question of possible gene flow between these two mallard populations, it does indicate that there is a potential barrier to panmixia.

  7. HIM-8 binds to the X chromosome pairing center and mediateschromosome-specific meiotic synapsis

    Energy Technology Data Exchange (ETDEWEB)

    Phillips, Carolyn M.; Wong, Chihunt; Bhalla, Needhi; Carlton,Peter M.; Weiser, Pinky; Meneely, Philip M.; Dernburg, Abby F.

    2005-06-05

    The him-8 gene is essential for proper meiotic segregationof the X chromosomes in C. elegans. Herewe show that loss of him-8function causes profound X-chromosome-specific defects in homolog pairingand synapsis.him-8 encodes a C2H2 zinc finger protein that is expressedduring meiosis andconcentrates at a site on the X chromosome known as themeiotic Pairing Center (PC). A role for HIM-8 in PC function is supportedby genetic interactions between PC lesions and him-8 mutations.HIM-8-bound chromosome sites associate with the nuclear envelope (NE)throughout meiotic prophase. Surprisingly, a point mutation in him-8 thatretains both chromosome binding and NE localization fails to stabilizepairing or promote synapsis. These observations indicate thatstabilization of homolog pairing is an active process in which thetethering of chromosome sites to the NE may be necessary but is notsufficient.

  8. A genome-wide scan in affected sibling pairs with idiopathic recurrent miscarriage suggests genetic linkage

    DEFF Research Database (Denmark)

    Kolte, Astrid Marie; Nielsen, H S; Moltke, Ida;

    2011-01-01

    Previously, siblings of patients with idiopathic recurrent miscarriage (IRM) have been shown to have a higher risk of miscarriage. This study comprises two parts: (i) an epidemiological part, in which we introduce data on the frequency of miscarriage among 268 siblings of 244 patients with IRM and...... (ii) a genetic part presenting data from a genome-wide linkage study of 38 affected sibling pairs with IRM. All IRM patients (probands) had experienced three or more miscarriages and affected siblings two or more miscarriages. The sibling pairs were genotyped by the Affymetrix GeneChip 50K Xba......I platform and non-parametric linkage analysis was performed via the software package Merlin. We find that siblings of IRM patients exhibit a higher frequency of miscarriage than population controls regardless of age at the time of pregnancy. We identify chromosomal regions with LOD scores between 2.5 and 3...

  9. Virus-induced gene silencing and transient gene expression in soybean using Bean pod mottle virus infectious clones

    Science.gov (United States)

    Virus-induced gene silencing (VIGS) is a powerful and rapid approach for determining the functions of plant genes. The basis of VIGS is that a viral genome is engineered so that it can carry fragments of plant genes, typically in the 200-300 base pair size range. The recombinant viruses are used to ...

  10. Expanding the Horizons of Educational Pair Programming: A Methodological Review of Pair Programming in Computer Science Education Research

    OpenAIRE

    Rimington, Keith B.

    2010-01-01

    Educators and researchers continue to explore the benefits, real or imagined, of implementing pair programming as part of the computer science pedagogy. Current reviews of computer science educational research practices do not focus on educational pair programming. This thesis presents a review of the research methods used in recent educational pair programming research. The primary purpose of this review is to inform the ongoing dialogue about and to provide evidence-based recommendations fo...

  11. Vortex Pair Creation on Brane-Antibrane Pair via Marginal Deformation

    OpenAIRE

    Majumder, Jaydeep; Sen, Ashoke(Harish-Chandra Research Institute, Chhatnag Road, Jhusi, Allahabad, 211019, India)

    2000-01-01

    It has been conjectured that the vortex solution on a D-brane - anti-D-brane system represents a D-brane of two lower dimension. We establish this result by first identifying a series of marginal deformations which create the vortex - antivortex pair on the brane - antibrane system, and then showing that under this series of marginal deformations the original D-brane - anti-D-brane system becomes a D-brane - anti-D-brane system with two lower dimensions. Generalization of this construction to...

  12. Genes2FANs: connecting genes through functional association networks

    Directory of Open Access Journals (Sweden)

    Dannenfelser Ruth

    2012-07-01

    Full Text Available Abstract Background Protein-protein, cell signaling, metabolic, and transcriptional interaction networks are useful for identifying connections between lists of experimentally identified genes/proteins. However, besides physical or co-expression interactions there are many ways in which pairs of genes, or their protein products, can be associated. By systematically incorporating knowledge on shared properties of genes from diverse sources to build functional association networks (FANs, researchers may be able to identify additional functional interactions between groups of genes that are not readily apparent. Results Genes2FANs is a web based tool and a database that utilizes 14 carefully constructed FANs and a large-scale protein-protein interaction (PPI network to build subnetworks that connect lists of human and mouse genes. The FANs are created from mammalian gene set libraries where mouse genes are converted to their human orthologs. The tool takes as input a list of human or mouse Entrez gene symbols to produce a subnetwork and a ranked list of intermediate genes that are used to connect the query input list. In addition, users can enter any PubMed search term and then the system automatically converts the returned results to gene lists using GeneRIF. This gene list is then used as input to generate a subnetwork from the user’s PubMed query. As a case study, we applied Genes2FANs to connect disease genes from 90 well-studied disorders. We find an inverse correlation between the counts of links connecting disease genes through PPI and links connecting diseases genes through FANs, separating diseases into two categories. Conclusions Genes2FANs is a useful tool for interpreting the relationships between gene/protein lists in the context of their various functions and networks. Combining functional association interactions with physical PPIs can be useful for revealing new biology and help form hypotheses for further experimentation. Our

  13. Exposure to pairs of Aeromonas strains enhances virulence in the Caenorhabditis elegans infection model

    Directory of Open Access Journals (Sweden)

    Thomas eMosser

    2015-11-01

    Full Text Available Aeromonad virulence remains poorly understood, and is difficult to predict from strain characteristics. In addition, infections are often polymicrobial (i.e., are mixed infections, and 5-10% of such infections include two distinct aeromonads, which has an unknown impact on virulence. In this work, we studied the virulence of aeromonads recovered from human mixed infections. We tested them individually and in association with other strains with the aim of improving our understanding of aeromonosis. Twelve strains that were recovered in pairs from six mixed infections were tested in a virulence model of the worm Caenorhabditis elegans. Nine isolates were weak worm killers (median time to death, TD50, ≥7 days when administered alone. Two pairs showed enhanced virulence, as indicated by a significantly shortened TD50 after co-infection versus infection with a single strain. Enhanced virulence was also observed for five of the 14 additional experimental pairs, and each of these pairs included one strain from a natural synergistic pair. These experiments indicated that synergistic effects were frequent and were limited to pairs that were composed of strains belonging to different species. The genome content of virulence-associated genes failed to explain virulence synergy, although some virulence-associated genes that were present in some strains were absent from their companion strain (e.g., T3SS. The synergy observed in virulence when 2 Aeromonas isolates were co-infected stresses the idea that consideration should be given to the fact that infection does not depend only on single strain virulence but is instead the result of a more complex interaction between the microbes involved, the host and the environment. These results are of interest for other diseases in which mixed infections are likely and in particular for water-borne diseases (e.g., legionellosis, vibriosis, in which pathogens may display enhanced virulence in the presence of the

  14. Multiple Pattern Matching Algorithm using Pair-count

    Directory of Open Access Journals (Sweden)

    Raju Bhukya

    2011-07-01

    Full Text Available Pattern matching occurs in various applications, ranging from simple text searching in word processors to identification of common motifs in DNA sequences in computational biology. The problem of exact pattern matching has been well studied and a number of efficient algorithms already exist. However these exact pattern matching algorithms are of little help when they are applied to finding patterns in DNA sequences. Pattern matching in a DNA sequence or pattern searching from a large data base is a major research area in computational biology. To extract pattern from a large sequence it takes more time, in order to reduce searching time we have proposed an approach that reduces the search time with accurate retrieval of the matched pattern from the given sequence of any size of a file. Executing patterns from a large DNA or protein data is a computationally intensive task. As performance plays a major role in extracting patterns from a given DNA sequence or from a large database independent of the size of the sequence. More efficient approaches related to multiple pattern matching techniques are becoming more important for finding the functional as well as the structural properties of the proteins and genes. One of the major problems in genomic field is to perform pattern comparison on DNA and protein sequences. In the current approach we explore a new technique which avoids unnecessary comparisons in the DNA sequence and gives the accurate retrieval of the pattern called a multiple pattern matching algorithm using pair count. The proposed technique gives very good performance related to DNA sequence analysis for querying of publicly available genome sequence data. By using this method the number of comparisons gradually decreases and comparison per character ratio of the proposed algorithm reduces accordingly when compared to the some of the existing popular methods. The experimental results show that there is considerable amount of performance

  15. Immunoglobulin genes

    Energy Technology Data Exchange (ETDEWEB)

    Honjo, T. (Kyoto Univ. (Japan)); Alt, F.W. (Columbia Univ., Dobbs Ferry, NY (USA). Hudson Labs.); Rabbitts, T.H. (Medical Research Council, Cambridge (UK))

    1989-01-01

    This book reports on the structure, function, and expression of the genes encoding antibodies in normal and neoplastic cells. Topics covered are: B Cells; Organization and rearrangement of immunoglobin genes; Immunoglobin genes in disease; Immunoglobin gene expression; and Immunoglobin-related genes.

  16. Secure Ad-hoc Pairing with Biometrics: SAfE

    NARCIS (Netherlands)

    Buhan, I.R.; Doumen, J.M.; Hartel, P.H.; Veldhuis, R.N.J.

    2007-01-01

    The pairing problem is to enable two devices, which share no prior context with each other, to agree upon a security association that they can use to protect their subsequent communication. Secure pairing should offer guarantees of the association partner's identity and it should be resistant to eav

  17. Secure Ad-hoc Pairing with Biometrics: SAfE

    NARCIS (Netherlands)

    Buhan, Ileana; Doumen, Jeroen; Hartel, Pieter; Veldhuis, Raymond

    2007-01-01

    The pairing problem is to enable two devices, which share no prior context with each other, to agree upon a security association that they can use to protect their subsequent communication. Secure pairing should o®er guarantees of the association partner's identity and it should be resistant to eave

  18. Real-time pair-feeding of animals

    Science.gov (United States)

    Leon, H. A.; Connolly, J. P.; Hitchman, M. J.; Humbert, J. E.

    1972-01-01

    Automatic pair-feeding system was developed which immediately dispenses same amount of food to control animal as has been consumed by experimental animal that has free access to food. System consists of: master feeding system; slave feeding station; and control mechanism. Technique performs real time pair-feeding without attendant time lag.

  19. Bright-dark incoherently coupled photovoltaic soliton pair

    Institute of Scientific and Technical Information of China (English)

    Hou Chun-Feng; Pei Yan-Bo; Zhou Zhong-Xiang; Sun Xiu-Dong

    2005-01-01

    The coupling between two mutually incoherent optical beams that propagate collinearly in open-circuit photovoltaic photorefractive media is investigated. It is shown that an incoherently coupled bright-dark spatial soliton pair can be formed due to photovoltaic effect. The physical properties of such a soliton pair are also discussed.

  20. Thermal pairing and giant dipole resonance in highly excited nuclei

    CERN Document Server

    Dang, Nguyen Dinh

    2014-01-01

    Recent results are reported showing the effects of thermal pairing in highly excited nuclei. It is demonstrated that thermal pairing included in the phonon damping model (PDM) is responsible for the nearly constant width of the giant dipole resonance (GDR) at low temperature $T $ 170 MeV.

  1. Partitions of nonzero elements of a finite field into pairs

    CERN Document Server

    Karasev, R N

    2010-01-01

    In this paper we prove two theorems. Informally, they claim that the nonzero elements of a finite field with odd characteristic can be partitioned into pairs with prescribed difference (maybe, with some alternatives) in each pair. We also consider some generalizations of these results to packing translates in a finite or infinite field.

  2. Gender pairing and bargaining—Beware the same sex!

    NARCIS (Netherlands)

    M. Sutter; R. Bosman; M.G. Kocher; F. van Winden

    2009-01-01

    We study the influence of gender and gender pairing on economic decision making in an experimental two-person bargaining game where the other party’s gender is known to both actors. We find that (1) gender per se has no significant effect on behavior, whereas (2) gender pairing systematically affect

  3. Electron Spin Pairing in High-Tc Superconductors

    Institute of Scientific and Technical Information of China (English)

    郭卫; 韩汝珊

    2001-01-01

    An electron pairing theory based on effective electron spin coupling mediated by antiferromagnetically correlated local moments is presented to account for high-Tc phenomena. We show that Kondo scattering and the suppression of the antiferromagnetic superexchange between Cu2+ moments lead to local triplet pairing, the mechanism underlying high-Tc superconductivity.

  4. Time Domain Analysis of Transmit/Receive Dipole Pair Array

    Institute of Scientific and Technical Information of China (English)

    Zheng Li-zhi; Xiao Bo-xur; Zhu Guo-qiang; Yang Zi-jie

    2003-01-01

    We introduce a new transmit/receive dipole pair array to obtain a compact quasi-monostatic antenna structure for ground penetrating radar systems. And we analyze this transmit/receive dipole pair array in time domain. The numerical results show that if the distance between the transmit antenna and receive antenna is appropriate the array configuration is adoptable.

  5. On e(+)e(-) pair production by colliding electromagnetic pulses

    NARCIS (Netherlands)

    Narozhny, NB; Bulanov, SS; Mur, VD; Popov, VS

    2004-01-01

    Electron-positron pair production from vacuum in an electromagnetic field created by two counterpropagating focused laser pulses interacting with each other is analyzed. The dependence of the number of produced pairs on the intensity of a laser pulse and the focusing parameter is studied with a real

  6. Machine learning for multi-view eye-pair detection

    NARCIS (Netherlands)

    Karaaba, Mahir Faik; Schomaker, Lambert; Wiering, Marco

    2014-01-01

    While face and eye detection is well known research topics in the field of object detection, eye-pair detection has not been much researched. Finding the location and size of an eye-pair in an image containing a face can enable a face recognition application to extract features from a face correspon

  7. A Metacognitive Approach to Pair Programming: Influence on Metacognitive Awareness

    Science.gov (United States)

    Breed, Betty; Mentz, Elsa; van der Westhuizen, Gert

    2014-01-01

    Introduction: The research focused on metacognition in a collaborative learning setting. Based on a comprehensive literature study the researchers designed a metacognitive teaching-learning strategy for pair programmers. Our purpose was to investigate the influence of this metacognitive teaching-learning strategy during pair programming in an…

  8. Teleportation of Quantum States through Mixed Entangled Pairs

    Institute of Scientific and Technical Information of China (English)

    ZHENG Shi-Biao

    2006-01-01

    @@ We describe a protocol for quantum state teleportation via mixed entangled pairs. With the help of an ancilla,near-perfect teleportation might be achieved. For pure entangled pairs, perfect teleportation might be achieved with a certain probability without using an ancilla. The protocol is generalized to teleportation of multiparticle states and quantum secret sharing.

  9. Relativistic Quasiparticle Random Phase Approximation with a Separable Pairing Force

    Institute of Scientific and Technical Information of China (English)

    TIAN Yuan; MA Zhong-Yu; Ring Peter

    2009-01-01

    In our previous work [Phys. Lett. (to be published), Chin. Phys. Lett. 23 (2006) 3226], we introduced a separable pairing force for relativistic Hartree-Bogoliubov calculations. This force was adjusted to reproduce the pairing properties of the Gogny force in nuclear matter. By using the well known techniques of Talmi and Moshinsky it can be expanded in a series of separable terms and converges quickly after a few terms. It was found that the pairing properties can be depicted on almost the same footing as the original pairing interaction, not only in nuclear matter, but also in finite nuclei. In this study, we construct a relativistic quasiparticle random phase approximation (RQRPA ) with this separable pairing interaction and calculate the excitation energies of the first excited 2+ .states and reduced B(E2; 0+ → 2+) transition rates for a chain of Sn isotopes in RQRPA. Compared with the results of the full Gogny force, we find that this simple separable pairing interaction can describe the pairing properties of the excited vibrational states as well as the original pairing interaction.

  10. The Dynamics of Galaxy Pairs in a Cosmological Setting

    CERN Document Server

    Moreno, Jorge; Ellison, Sara L; Patton, David R; Torrey, Paul; Moster, Benjamin P

    2013-01-01

    We use the Millennium Simulation, and an abundance-matching framework, to investigate the dynamical behaviour of galaxy pairs embedded in a cosmological context. Our main galaxy-pair sample, selected to have separations under 250 kpc/h, consists of over 1.3 million pairs at redshift z = 0, with stellar masses greater than 10^9 Msun, probing mass ratios down to 1:1000. We use dark matter halo membership and energy to classify our galaxy pairs. In terms of halo membership, central-satellite pairs tend to be in isolation (in relation to external more massive galaxies), are energetically- bound to each other, and are also weakly-bound to a neighbouring massive galaxy. Satellite-satellite pairs, instead, inhabit regions in close proximity to a more massive galaxy, are energetically-unbound, and are often bound to that neighbour. We find that 60% of our paired galaxies are bound to both their companion and to a third external object. Moreover, only 9% of our pairs resemble the kind of systems described by idealised...

  11. Electrostatic pair creation and recombination in quantum plasmas

    CERN Document Server

    Marklund, M; Shukla, P K; Stenflo, L; Dieckmann, M E; Parviainen, M

    2006-01-01

    The collective production of electron-positron pairs by electrostatic waves in quantum plasmas is investigated. In particular, a semi-classical governing set of equation for a self-consistent treatment of pair creation by the Schwinger mechanism in a quantum plasma is derived.

  12. Solving the Airline Crew Pairing Problem using Subsequence Generation

    DEFF Research Database (Denmark)

    Rasmussen, Matias Sevel; Ryan, David; Lusby, Richard Martin;

    2009-01-01

    Good and fast solutions to the airline crew pairing problem are highly interesting for the airline industry, as crew costs are the biggest expenditure after fuel for an airline. The crew pairing problem is typically modelled as a set partitioning problem and solved by column generation. However...

  13. Subsequence Generation for the Airline Crew Pairing Problem

    DEFF Research Database (Denmark)

    Rasmussen, Matias Sevel; Lusby, Richard Martin; Ryan, David;

    Good and fast solutions to the airline crew pairing problem are highly interesting for the airline industry, as crew costs are the biggest expenditure after fuel for an airline. The crew pairing problem is typically modelled as a set partitioning problem and solved by column generation. However...

  14. Solving the Airline Crew Pairing Problem using Subsequence Generation

    DEFF Research Database (Denmark)

    Rasmussen, Matias Sevel; Ryan, David M.; Lusby, Richard Martin;

    2010-01-01

    Good and fast solutions to the airline crew pairing problem are highly interesting for the airline industry, as crew costs are the biggest expenditure after fuel for an airline. The crew pairing problem is typically modelled as a set partitioning problem and solved by column generation. However...

  15. Solving the Airline Crew Pairing Problem using Subsequence Generation

    DEFF Research Database (Denmark)

    Rasmussen, Matias Sevel; Lusby, Richard Martin; Ryan, David M.;

    Good and fast solutions to the airline crew pairing problem are highly interesting for the airline industry, as crew costs are the biggest expenditure after fuel for an airline. The crew pairing problem is typically modelled as a set partitioning problem and solved by column generation. However...

  16. Proton-neutron correlations in a broken-pair model

    International Nuclear Information System (INIS)

    In this thesis nuclear-structure calculations are reported which were performed with the broken-pair model. The model which is developed, is an extension of existing broken-pair models in so far that it includes both proton and neutron valence pairs. The relevant formalisms are presented. In contrast to the number-non-conserving model, a proton-neutron broken-pair model is well suited to study the correlations which are produced by the proton-neutron interaction. It is shown that the proton-neutron force has large matrix elements which mix the proton- with neutron broken-pair configurations. This occurs especially for Jsup(PI)=2+ and 3- pairs. This property of the proton-neutron force is used to improve the spectra of single-closed shell nuclei, where particle-hole excitations of the closed shell are a special case of broken-pair configurations. Using Kr and Te isotopes it is demonstrated that the proton-neutron force gives rise to correlated pair structures, which remain remarkably constant with varying nucleon numbers. (Auth.)

  17. Galaxy pairs as a probe for mergers at z ~ 2

    DEFF Research Database (Denmark)

    Man, A.W.S.; Zirm, Andrew Wasmuth; Toft, Sune

    2011-01-01

    In this work I investigate the redshift evolution of pair fraction of a sample of 196 massive galaxies from z = 0 to 3, selected from the COSMOS field. We find that on average a massive galaxy undergoes ~ 1.1 \\pm 0.5 major merger since z = 3. I will review the current limitations of using the pair...

  18. Training staff to conduct a paired-stimulus preference assessment.

    OpenAIRE

    Lavie, Tami; Sturmey, Peter

    2002-01-01

    Three staff members were trained to conduct stimulus preference assessments using a paired-stimulus format with 8 children with autism. Staff were trained to mastery level using brief instruction, a video model, and rehearsal with verbal feedback. Training took about 80 min per staff member. Results demonstrated that staff rapidly learned to correctly perform paired-stimulus preference assessments with children.

  19. Tensor product theorem for Hitchin pairs -An algebraic approach

    CERN Document Server

    Balaji, V

    2010-01-01

    We give an algebraic approach to the study of Hitchin pairs and prove the tensor product theorem for Higgs semistable Hitchin pairs over smooth projective curves defined over algebraically closed fields $k$ of characteristic $0$ and characteristic $p$, with $p$ satisfying some natural bounds. We also prove the corresponding theorem for polystable bundles.

  20. Approximate solution of the pairing Hamiltonian in the Berggren basis

    CERN Document Server

    Mercenne, A; Ploszajczak, M

    2015-01-01

    We derive the approximate solution for the pairing Hamiltonian in the Berggren ensemble of single particle states including bound, resonance and non-resonant scattering states. We show that this solution is reliable in the limit of a weak pairing interaction.

  1. Observing Pair-Work Task in an English Speaking Class

    Science.gov (United States)

    Achmad, Diana; Yusuf, Yunisrina Qismullah

    2014-01-01

    This paper reports on students' pair-work interactions to develop their speaking skills in an ELT classroom which consisted of international learners. A number of 16 learners of intermediate proficiency with IELTS score band 5.5 were observed. The teacher had paired those he considered among them to be the more competent ones (hereafter, stronger)…

  2. Lepton-pair production in hadron-nucleus collisions

    International Nuclear Information System (INIS)

    The general features of lepton pair production are reviewed. Physics motivations for precision measurements of lepton pair production in nuclei are discussed. Preliminary results from Fermilab experiment E772 are presented. The relevance of these results to the EMC effects and to J//psi/ suppression in heavy ion collisions is also discussed. 73 refs., 26 figs., 2 tabs

  3. Enumeration of non-crossing pairings on bit strings

    CERN Document Server

    Kemp, Todd; Rattan, Amarpreet; Smyth, Clifford

    2009-01-01

    A non-crossing pairing on a bitstring matches 1s and 0s in a manner such that the pairing diagram is nonintersecting. By considering such pairings on arbitrary bitstrings $1^{n_1} 0^{m_1} ... 1^{n_r} 0^{m_r}$, we generalize classical problems from the theory of Catalan structures. In particular, it is very difficult to find useful explicit formulas for the enumeration function $\\phi(n_1, m_1, ..., n_r, m_r)$, which counts the number of pairings as a function of the underlying bitstring. We determine explicit formulas for $\\phi$, and also prove general upper bounds in terms of Fuss-Catalan numbers by relating non-crossing pairings to other generalized Catalan structures (that are in some sense more natural). This enumeration problem arises in the theory of random matrices and free probability.

  4. Scent-marking in lone wolves and newly formed pairs

    Science.gov (United States)

    Rothman, R.J.; Mech, L.D.

    1979-01-01

    Scent-marking was studied in wolves (Canis lupus) along 133 km of tracks in northern Minnesota during winters of 1975 to 1976 and 1976 to 1977 and in two captive packs and four captive pairs for various periods. Lone wolves, which possess neither mates nor territories, rarely marked by raised-leg urination and defaecated and urinated less along roads and trails, where territorial pairs and packs generally marked. Newly formed pairs marked the most, eventually decreasing their rates to those of established packs. Generally, wolves that scent-marked also bred, whereas non-marking wolves usually did not breed. Scent-marking apparently is important to the success of courtship in new pairs and to reproductive synchrony in established pairs, as well as serving a territorial function.

  5. Nonperturbative signatures in pair production for general elliptic polarization fields

    CERN Document Server

    Li, Z L; Xie, B S; Shen, B F; Fu, L B; Liu, J

    2015-01-01

    The momentum signatures in nonperturbative multiphoton pair production for general elliptic polarization electric fields are investigated by employing the real-time Dirac-Heisenberg-Wigner formalism. For a linearly polarized electric field we find that the positions of the nodes in momenta spectra of created pairs depend only on the electric field frequency. The polarization of external fields could not only change the node structures or even make the nodes disappear but also change the thresholds of pair production. The momentum signatures associated to the node positions in which the even-number-photon pair creation process is forbid could be used to distinguish the orbital angular momentum of created pairs on the momenta spectra. These distinguishable momentum signatures could be relevant for providing the output information of created particles and also the input information of ultrashort laser pulses.

  6. Purification of an unpolarized spin ensemble into entangled singlet pairs

    CERN Document Server

    Greiner, Johannes N; Wrachtrup, Jörg

    2016-01-01

    Dynamical polarization of nuclear spin ensembles is of central importance for magnetic resonance studies, precision sensing and for applications in quantum information theory. Here we propose a scheme to generate long-lived singlet pairs in an unpolarized nuclear spin ensemble which is dipolar coupled to the electron spins of a Nitrogen Vacancy center in diamond. The quantum mechanical back-action induced by frequent spin-selective readout of the NV centers allows the nuclear spins to pair up into maximally entangled singlet pairs. Counterintuitively, the robustness of the pair formation to dephasing noise improves with increasing size of the spin ensemble. We also show how the paired nuclear spin state allows for enhanced sensing capabilities of NV centers in diamond.

  7. A new threshold proxy signature scheme from bilinear pairings

    Institute of Scientific and Technical Information of China (English)

    QIAN Haifeng; CAO Zhenfu; XUE Qingshui

    2004-01-01

    Based on the GDH signature (short signature scheme) a probabilistic signature scheme is proposed in this paper with security proof. Then a new threshold proxy signature from bilinear pairings is proposed as well by using the new probabilistic signature scheme and the properties of the Gap Diffie-Hellman (GDH) group (where the Computational Diffie-Hellman problem is hard but the Decisional Diffie-Hellman problem is easy to solve). Our constructions are based on the recently proposed GDH signature scheme of Bonel et al.'s article. Bilinear pairings could be built from Weil pairing or Tate pairing. So most our constructions would be simpler, but still with high security. The proposed threshold proxy signature is the first one which is built from bilinear pairings. At the end of this paper security and performance of the threshold proxy signature scheme is also analyzed.

  8. High-Temperature Cooper pairing Between Different Chemical Species

    CERN Document Server

    Mackie, M; Piilo, J; Suominen, K A; Javanainen, J; Mackie, Matt; Dannenberg, Olavi; Piilo, Jyrki; Suominen, Kalle-Antti; Javanainen, Juha

    2003-01-01

    First introduced to explain superconductivity, anomalous quantum correlations between degenerate electrons with equal and opposite momentum, i.e., Cooper pairs, are due physically to an electron-electron attraction mediated by the exchange of lattice-vibration-generated phonons. Cooper-like pairing between different chemical species was immediately suggested to explain the larger excitation energy for nuclei with even-rather-than-odd numbers of nucleons, although unambiguous evidence for proton-neutron pairs never manifested. Here we report the prospect of Cooper pairing between different chemical species in a degenerate Fermi atom-molecule mixture submerged in a Bose condensate of atoms, a state enabled via two-color Raman photoassociation of a Bose-Fermi mixture of degenerate atoms. Condensate density fluctuations replace the vibrating ion lattice of the superconductor, and phonon exchange induces atom-molecule Cooper pairing at about a third of the Fermi temperature.

  9. Numerically optimal Runge-Kutta pairs with interpolants

    Science.gov (United States)

    Verner, J.

    2010-03-01

    Explicit Runge-Kutta pairs are known to provide efficient solutions to initial value differential equations with inexpensive derivative evaluations. Two criteria for selection are proposed with a view to deriving pairs of all orders 6(5) to 9(8) which minimize computation while achieving a user-specified accuracy. Coefficients of improved pairs, their stability regions and coefficients of appended optimal interpolatory Runge-Kutta formulas are provided on the author's website (www.math.sfu.ca/~jverner). This note reports results of tests on these pairs to illustrate their effectiveness in solving nonstiff initial value problems. These pairs and interpolants may be used for implementation, or else to provide comparison targets for other new types of methods such as explicit general linear methods.

  10. Pulsar Pair Cascades in a Distorted Magnetic Dipole Field

    Science.gov (United States)

    Harding, Alice K.; Muslimov, Alex G.

    2010-01-01

    We investigate the effect of a distorted neutron star dipole magnetic field on pulsar pair cascade multiplicity and pair death lines. Using a simple model for a distorted dipole field that produces an offset polar cap (PC), we derive the accelerating electric field above the PC in space-charge-limited flow. We find that even a modest azimuthally asymmetric distortion can significantly increase the accelerating electric field on one side of the PC and, combined with a smaller field line radius of curvature, leads to larger pair multiplicity. The death line for producing pairs by curvature radiation moves downward in the P-P-dot diagram, allowing high pair multiplicities in a larger percentage of the radio pulsar population. These results could have important implications for the radio pulsar population, high energy pulsed emission, and the pulsar contribution to cosmic ray positrons.

  11. Intergenic DNA sequences flanking the pseudo alpha globin genes of human and chimpanzee.

    OpenAIRE

    Sawada, I; Beal, M P; Shen, C K; Chapman, B.; Wilson, A C; Schmid, C.

    1983-01-01

    We have determined the sequence of 2400 base pairs upstream from the human pseudo alpha globin (psi alpha) gene, and for comparison, 1100 base pairs of DNA within and upstream from the chimpanzee psi alpha gene. The region upstream from the promoter of the psi alpha gene shows no significant homology to the intergenic regions of the adult alpha 2 and alpha 1 globin genes. The chimpanzee gene has a coding defect in common with the human psi alpha gene, showing that the product of this gene, if...

  12. The Xenopus FcR family demonstrates continually high diversification of paired receptors in vertebrate evolution

    Directory of Open Access Journals (Sweden)

    Najakshin Alexander M

    2008-05-01

    Full Text Available Abstract Background Recent studies have revealed an unexpected diversity of domain architecture among FcR-like receptors that presumably fulfill regulatory functions in the immune system. Different species of mammals, as well as chicken and catfish have been found to possess strikingly different sets of these receptors. To better understand the evolutionary history of paired receptors, we extended the study of FcR-like genes in amphibian representatives Xenopus tropicalis and Xenopus laevis. Results The diploid genome of X. tropicalis contains at least 75 genes encoding paired FcR-related receptors designated XFLs. The allotetraploid X. laevis displays many similar genes primarily expressed in lymphoid tissues. Up to 35 domain architectures generated by combinatorial joining of six Ig-domain subtypes and two subtypes of the transmembrane regions were found in XFLs. None of these variants are shared by FcR-related proteins from other studied species. Putative activating XFLs associate with the FcRγ subunit, and their transmembrane domains are highly similar to those of activating mammalian KIR-related receptors. This argues in favor of a common origin for the FcR and the KIR families. Phylogenetic analysis shows that the entire repertoires of the Xenopus and mammalian FcR-related proteins have emerged after the amphibian-amniotes split. Conclusion FcR- and KIR-related receptors evolved through continual species-specific diversification, most likely by extensive domain shuffling and birth-and-death processes. This mode of evolution raises the possibility that the ancestral function of these paired receptors was a direct interaction with pathogens and that many physiological functions found in the mammalian receptors were secondary acquisitions or specializations.

  13. SRTM Stereo Pair: Northwest of Bhuj, India

    Science.gov (United States)

    2001-01-01

    On January 26, 2001, the Kachchh region in western India suffered the most deadly earthquake in India's history. Shortly thereafter, geologists traversed the region looking for ground surface disruptions, such as fault breaks, that could provide clues to the tectonic processes here. Shuttle Radar Topography Mission (SRTM) scientists provided stereoscopic images to the geologists, similar to this 3-D view of the terrain northwest of the city of Bhuj. The geologists reported back that the images were essential in optimizing their field activities. Tectonic landforms are created by ground displacements that are repetitious over geologic time, so these landforms are good places to look for co-seismic faulting and warping. The stereoscopic images showed the geologists where the structures are located and their overall pattern, which could not be seen while standing on anyone hill or in any one gully. In general, the field studies found that surface disruptions by the recent earthquake were minimal and that the major landforms are quite old and probably not directly related to ongoing tectonic processes.Features of interest in the view shown here include the largest hill (upper left-center), which is a dome or anticline, upwardly convex layered rocks. Also visible are a possible volcanic plug (lower left-center) and an incised meandering stream (center). Agriculture in this arid region is concentrated on the alluvial fan of the major stream (green pattern, upper right).This stereoscopic image was generated by draping a Landsat satellite image (taken just two weeks after the earthquake) over a preliminary SRTM elevation model. Two differing perspectives were then calculated, one for each eye. They can be seen in 3-D by viewing the left image with the right eye and the right image with the left eye (cross-eyed viewing or by downloading and printing the image pair and viewing them with a stereoscope. When stereoscopically merged, the result is a vertically exaggerated view

  14. Stereo Pair, Mount St Helens, Washington State

    Science.gov (United States)

    2002-01-01

    On May 18, 1980, Mount St. Helens catastrophically erupted, causing the worst volcanic disaster in the recorded history of the United States. An earthquake shook loose the northern flank of the volcano, and about 2.8 cubic kilometers (0.67 cubic miles) of rock slid downslope in the world's largest recorded landslide. The avalanche released pressure on the volcano and unleashed a huge explosion, which was directed generally northward. The mountain ultimately lost 227 meters (1314 feet) of its height and devastated about 600 square kilometers (230 square miles) of forest.This stereoscopic view combines a Landsat satellite image with a Shuttle Radar Topography Mission elevation model to show the volcanic crater and most of the zone of devastation. Areas now relatively devoid of vegetation appear bright. Note the landslide debris clogging the northern drainages and forming natural dams (or enlarging previously existing ones). Also note the volcanic dome built up within the crater, and the extensive floating debris still present on Spirit Lake (northeast of the crater) 12 years after the eruption.This stereoscopic image was generated by draping a Landsat satellite image over a Shuttle Radar Topography Mission digital elevation model. Two differing perspectives were then calculated, one for each eye. They can be seen in 3-D by viewing the left image with the right eye and the right image with the left eye (cross-eyed viewing or by downloading and printing the image pair and viewing them with a stereoscope. When stereoscopically merged, the result is a vertically exaggerated view of Earth's surface in its full three dimensions.Landsat has been providing visible and infrared views of the Earth since 1972. SRTM elevation data matches the 30-meter (98-foot) resolution of most Landsat images and will substantially help in analyzing the large and growing Landsat image archive, managed by the U.S. Geological Survey (USGS).Elevation data used in this image was acquired by the

  15. SRTM Stereo Pair: Wheeler Ridge, California

    Science.gov (United States)

    2000-01-01

    Wheeler Ridge and vicinity, California, is a site of major tectonic activity, both historically and over recent geologic time. The epicenter of the 7.5 magnitude Kern County earthquake occurred here on July 21,1952, and numerous geologic and topographic features indicate rapid geologic processes. The ridge itself (upper-right center) is a geologic fold that is growing out of the southern San Joaquin Valley. A prominent 'wind gap,' now used for passage of the California aquaduct (with the aid of a pumping station), is evidence that the ridge grew faster than tranversing streams could erode down. Nearby abrupt and/or landslid mountain fronts similarly indicate a vigorous tectonic setting here, just north of the San Andreas fault. The Interstate 5 freeway can be seen crossing agricultural fields on the right and entering the very rugged and steep Grapevine Canyon toward the bottom.This stereoscopic image was generated by draping a Landsat satellite image over a preliminary Shuttle Radar Topography Mission (SRTM) elevation model. Two differing perspectives were then calculated, one for each eye. They can be seen in 3-D by viewing the left image with the right eye and the right image with the left eye (cross-eyed viewing), or by downloading and printing the image pair and viewing them with a stereoscope. When stereoscopically merged, the result is a vertically exaggerated view of the Earth's surface in its full three dimensions. Landsat has been providing visible and infrared views of the Earth since 1972. SRTM elevation data matches the 30-meter resolution of most Landsat images and will substantially help in analyses of the large and growing Landsat image archive.The elevation data used in this image was acquired by SRTM aboard the Space Shuttle Endeavour, launched on February 11, 2000. SRTM used the same radar instrument that comprised the Spaceborne Imaging Radar-C/X-Band Synthetic Aperture Radar (SIR-C/X-SAR) that flew twice on the Space Shuttle Endeavour in 1994

  16. On the combination of the Cooper pair and the Ogg pair in the high-Tc oxide superconductor

    International Nuclear Information System (INIS)

    In this paper it is argued that the superconductivity of the high-Tc oxide superconductor (HTOS) can be explained by the combinating mechanism of the Cooper pair and the Ogg pair. The properties of the superconducting state of the HTOS have been calculated under this mechanism, and the theoretical results are overall consistent with the experiment. (author). 37 refs

  17. Effects of Worked Examples, Example-Problem Pairs, and Problem-Example Pairs Compared to Problem Solving

    NARCIS (Netherlands)

    Van Gog, Tamara; Kester, Liesbeth; Paas, Fred

    2010-01-01

    Van Gog, T., Kester, L., & Paas, F. (2010, August). Effects of worked examples, example-problem pairs, and problem-example pairs compared to problem solving. Paper presented at the Biannual EARLI SIG meeting of Instructional design and Learning and instruction with computers, Ulm, Germany.

  18. Calix[4]pyrrole-based ion pair receptors.

    Science.gov (United States)

    Kim, Sung Kuk; Sessler, Jonathan L

    2014-08-19

    Ion pair receptors, which are able to bind concurrently both a cation and an anion, often display higher selectivity and affinity for specific ion pairs than simple ion receptors capable of recognizing primarily either a cation or an anion. This enhancement in recognition function is attributable to direct or indirect cooperative interactions between cobound ions via electrostatic attractions between oppositely charged ions, as well as to positive allosteric effects. In addition, by virtue of binding the counterions of the targeted ion, ion pair receptors can minimize the solvation of the counterions, which can otherwise have a negative effect on the interactions between the receptors and the targeted ions. As a result of their more favorable interactions, ion pair receptors are attractive for use in applications, such as extraction and sensing, where control of the binding interactions is advantageous. In this Account, we illustrate this potential in the context of ion pair receptors based on the calix[4]pyrrole scaffold. Both simple ditopic ion pair receptors, containing sites for the recognition of a single anion and single cation, and so-called multitopic ion pair receptors will be discussed. The latter systems differ from conventional, so-called ditopic ion pair receptors in that they contain more than one binding site for a given targeted ion (e.g., a cation). This permits a level of selectivity and control over binding function not normally seen for simple ion or ion pair receptors containing one or two binding sites, respectively. Calix[4]pyrroles are macrocyclic compounds consisting of four pyrrole units linked via fully substituted sp(3) hybridized meso carbon atoms. They are effective receptors for Lewis basic anions (e.g., halides) in typical organic media and under certain conditions will recognize ion pairs containing charge diffuse cations, such as a small alkylammonium, imidazolium, or cesium cations. The calix[4]pyrrole framework is further

  19. Twin photon pairs in a high-Q silicon microresonator

    Energy Technology Data Exchange (ETDEWEB)

    Rogers, Steven; Lu, Xiyuan [Department of Physics and Astronomy, University of Rochester, Rochester, New York 14627 (United States); Jiang, Wei C. [Institute of Optics, University of Rochester, Rochester, New York 14627 (United States); Lin, Qiang, E-mail: qiang.lin@rochester.edu [Institute of Optics, University of Rochester, Rochester, New York 14627 (United States); Department of Electrical and Computer Engineering, University of Rochester, Rochester, New York 14627 (United States)

    2015-07-27

    We report the generation of high-purity twin photon pairs through cavity-enhanced non-degenerate four-wave mixing (FWM) in a high-Q silicon microdisk resonator. Twin photon pairs are created within the same cavity mode and are consequently expected to be identical in all degrees of freedom. The device is able to produce twin photons at telecommunication wavelengths with a pair generation rate as large as (3.96 ± 0.03) × 10{sup 5} pairs/s, within a narrow bandwidth of 0.72 GHz. A coincidence-to-accidental ratio of 660 ± 62 was measured, the highest value reported to date for twin photon pairs, at a pair generation rate of (2.47 ± 0.04) × 10{sup 4} pairs/s. Through careful engineering of the dispersion matching window, we have reduced the ratio of photons resulting from degenerate FWM to non-degenerate FWM to less than 0.15.

  20. The coevolution of long-term pair bonds and cooperation.

    Science.gov (United States)

    Song, Z; Feldman, M W

    2013-05-01

    The evolution of social traits may not only depend on but also change the social structure of the population. In particular, the evolution of pairwise cooperation, such as biparental care, depends on the pair-matching distribution of the population, and the latter often emerges as a collective outcome of individual pair-bonding traits, which are also under selection. Here, we develop an analytical model and individual-based simulations to study the coevolution of long-term pair bonds and cooperation in parental care, where partners play a Snowdrift game in each breeding season. We illustrate that long-term pair bonds may coevolve with cooperation when bonding cost is below a threshold. As long-term pair bonds lead to assortative interactions through pair-matching dynamics, they may promote the prevalence of cooperation. In addition to the pay-off matrix of a single game, the evolutionarily stable equilibrium also depends on bonding cost and accidental divorce rate, and it is determined by a form of balancing selection because the benefit from pair-bond maintenance diminishes as the frequency of cooperators increases. Our findings highlight the importance of ecological factors affecting social bonding cost and stability in understanding the coevolution of social behaviour and social structures, which may lead to the diversity of biological social systems. PMID:23496797

  1. Attribute pair-based visual recognition and memory.

    Directory of Open Access Journals (Sweden)

    Masahiko Morita

    Full Text Available BACKGROUND: In the human visual system, different attributes of an object, such as shape, color, and motion, are processed separately in different areas of the brain. This raises a fundamental question of how are these attributes integrated to produce a unified perception and a specific response. This "binding problem" is computationally difficult because all attributes are assumed to be bound together to form a single object representation. However, there is no firm evidence to confirm that such representations exist for general objects. METHODOLOGY/PRINCIPAL FINDINGS: Here we propose a paired-attribute model in which cognitive processes are based on multiple representations of paired attributes. In line with the model's prediction, we found that multiattribute stimuli can produce an illusory perception of a multiattribute object arising from erroneous integration of attribute pairs, implying that object recognition is based on parallel perception of paired attributes. Moreover, in a change-detection task, a feature change in a single attribute frequently caused an illusory perception of change in another attribute, suggesting that multiple pairs of attributes are stored in memory. CONCLUSIONS/SIGNIFICANCE: The paired-attribute model can account for some novel illusions and controversial findings on binocular rivalry and short-term memory. Our results suggest that many cognitive processes are performed at the level of paired attributes rather than integrated objects, which greatly facilitates the binding problem and provides simpler solutions for it.

  2. Merging a Pair of Supermassive Black Holes

    Science.gov (United States)

    Kohler, Susanna

    2016-10-01

    hydrodynamically, simulating the final stages of the galaxy merger.When the separation of the two SMBHs is small enough, the authors extract a spherical region of 5 kpc from around the pair and evolve this as an N-body simulation.Finally, the separation of the SMBHs becomes so small (0.01 pc) that gravitational-wave emission is the dominant loss of energy driving the inspiral. The authors add post-Newtonian terms into the N-body simulation to account for this.Time evolution of the separation between the SMBHs, beginning with the hydrodynamical simulation (blue), then transitioning to the direct N-body calculation (red), and ending with the introduction of post-Newtonian terms (green) to account for gravitational-wave emission. [Adapted from Khan et al. 2016]Successful CoalescenceKhan and collaborators complex approach allows them to simulate the entire process of the merger and SMBH coalescence, resulting in several key determinations.First, they demonstrate that the SMBHs can coalesce on timescales of only tens of Myr, which is roughly two orders of magnitude smaller than what was typically estimated before. They find that gas dissipation before the merger is instrumental in creating the conditions that allow for this rapid orbital decay.The authors also demonstrate that the gravitational potential of the galaxy merger remnant is triaxial throughout the merger. Khan and collaborators simulations confirm that this non-spherical potential solves the final parsec problem by sending stars on plunging orbits around the SMBHs. These more distant stars cause the SMBHs to lose angular momentum through dynamical friction and continue their inspiral, even when the stars immediately surrounding the SMBHs have been depleted.This simulation isan important step toward a better understanding of SMBH mergers. Its outcomes are especially promising for future gravitational-wave campaigns, as the short SMBH coalescence timescales indicate that these mergers could indeed be observable

  3. Analysis of Food Pairing in Regional Cuisines of India.

    Directory of Open Access Journals (Sweden)

    Anupam Jain

    Full Text Available Any national cuisine is a sum total of its variety of regional cuisines, which are the cultural and historical identifiers of their respective regions. India is home to a number of regional cuisines that showcase its culinary diversity. Here, we study recipes from eight different regional cuisines of India spanning various geographies and climates. We investigate the phenomenon of food pairing which examines compatibility of two ingredients in a recipe in terms of their shared flavor compounds. Food pairing was enumerated at the level of cuisine, recipes as well as ingredient pairs by quantifying flavor sharing between pairs of ingredients. Our results indicate that each regional cuisine follows negative food pairing pattern; more the extent of flavor sharing between two ingredients, lesser their co-occurrence in that cuisine. We find that frequency of ingredient usage is central in rendering the characteristic food pairing in each of these cuisines. Spice and dairy emerged as the most significant ingredient classes responsible for the biased pattern of food pairing. Interestingly while individual spices contribute to negative food pairing, dairy products on the other hand tend to deviate food pairing towards positive side. Our data analytical study highlighting statistical properties of the regional cuisines, brings out their culinary fingerprints that could be used to design algorithms for generating novel recipes and recipe recommender systems. It forms a basis for exploring possible causal connection between diet and health as well as prospection of therapeutic molecules from food ingredients. Our study also provides insights as to how big data can change the way we look at food.

  4. Analysis of Food Pairing in Regional Cuisines of India.

    Science.gov (United States)

    Jain, Anupam; N K, Rakhi; Bagler, Ganesh

    2015-01-01

    Any national cuisine is a sum total of its variety of regional cuisines, which are the cultural and historical identifiers of their respective regions. India is home to a number of regional cuisines that showcase its culinary diversity. Here, we study recipes from eight different regional cuisines of India spanning various geographies and climates. We investigate the phenomenon of food pairing which examines compatibility of two ingredients in a recipe in terms of their shared flavor compounds. Food pairing was enumerated at the level of cuisine, recipes as well as ingredient pairs by quantifying flavor sharing between pairs of ingredients. Our results indicate that each regional cuisine follows negative food pairing pattern; more the extent of flavor sharing between two ingredients, lesser their co-occurrence in that cuisine. We find that frequency of ingredient usage is central in rendering the characteristic food pairing in each of these cuisines. Spice and dairy emerged as the most significant ingredient classes responsible for the biased pattern of food pairing. Interestingly while individual spices contribute to negative food pairing, dairy products on the other hand tend to deviate food pairing towards positive side. Our data analytical study highlighting statistical properties of the regional cuisines, brings out their culinary fingerprints that could be used to design algorithms for generating novel recipes and recipe recommender systems. It forms a basis for exploring possible causal connection between diet and health as well as prospection of therapeutic molecules from food ingredients. Our study also provides insights as to how big data can change the way we look at food.

  5. Analysis of Food Pairing in Regional Cuisines of India.

    Science.gov (United States)

    Jain, Anupam; N K, Rakhi; Bagler, Ganesh

    2015-01-01

    Any national cuisine is a sum total of its variety of regional cuisines, which are the cultural and historical identifiers of their respective regions. India is home to a number of regional cuisines that showcase its culinary diversity. Here, we study recipes from eight different regional cuisines of India spanning various geographies and climates. We investigate the phenomenon of food pairing which examines compatibility of two ingredients in a recipe in terms of their shared flavor compounds. Food pairing was enumerated at the level of cuisine, recipes as well as ingredient pairs by quantifying flavor sharing between pairs of ingredients. Our results indicate that each regional cuisine follows negative food pairing pattern; more the extent of flavor sharing between two ingredients, lesser their co-occurrence in that cuisine. We find that frequency of ingredient usage is central in rendering the characteristic food pairing in each of these cuisines. Spice and dairy emerged as the most significant ingredient classes responsible for the biased pattern of food pairing. Interestingly while individual spices contribute to negative food pairing, dairy products on the other hand tend to deviate food pairing towards positive side. Our data analytical study highlighting statistical properties of the regional cuisines, brings out their culinary fingerprints that could be used to design algorithms for generating novel recipes and recipe recommender systems. It forms a basis for exploring possible causal connection between diet and health as well as prospection of therapeutic molecules from food ingredients. Our study also provides insights as to how big data can change the way we look at food. PMID:26430895

  6. Selecting one of several mating types through gene segment joining and deletion in Tetrahymena thermophila.

    Directory of Open Access Journals (Sweden)

    Marcella D Cervantes

    Full Text Available The unicellular eukaryote Tetrahymena thermophila has seven mating types. Cells can mate only when they recognize cells of a different mating type as non-self. As a ciliate, Tetrahymena separates its germline and soma into two nuclei. During growth the somatic nucleus is responsible for all gene transcription while the germline nucleus remains silent. During mating, a new somatic nucleus is differentiated from a germline nucleus and mating type is decided by a stochastic process. We report here that the somatic mating type locus contains a pair of genes arranged head-to-head. Each gene encodes a mating type-specific segment and a transmembrane domain that is shared by all mating types. Somatic gene knockouts showed both genes are required for efficient non-self recognition and successful mating, as assessed by pair formation and progeny production. The germline mating type locus consists of a tandem array of incomplete gene pairs representing each potential mating type. During mating, a complete new gene pair is assembled at the somatic mating type locus; the incomplete genes of one gene pair are completed by joining to gene segments at each end of germline array. All other germline gene pairs are deleted in the process. These programmed DNA rearrangements make this a fascinating system of mating type determination.

  7. Early Life Manipulations of the Nonapeptide System Alter Pair Maintenance Behaviors and Neural Activity in Adult Male Zebra Finches.

    Science.gov (United States)

    Baran, Nicole M; Tomaszycki, Michelle L; Adkins-Regan, Elizabeth

    2016-01-01

    Adult zebra finches (T. guttata) form socially monogamous pair bonds characterized by proximity, vocal communication, and contact behaviors. In this experiment, we tested whether manipulations of the nonapeptide hormone arginine vasotocin (AVT, avian homolog of vasopressin) and the V1a receptor (V1aR) early in life altered species-typical pairing behavior in adult zebra finches of both sexes. Although there was no effect of treatment on the tendency to pair in either sex, males in different treatments exhibited profoundly different profiles of pair maintenance behavior. Following a brief separation, AVT-treated males were highly affiliative with their female partner but sang very little compared to Controls. In contrast, males treated with a V1aR antagonist sang significantly less than Controls, but did not differ in affiliation. These effects on behavior in males were also reflected in changes in the expression of V1aR and immediate early gene activity in three brain regions known to be involved in pairing behavior in birds: the medial amygdala, medial bed nucleus of the stria terminalis, and the lateral septum. AVT males had higher V1aR expression in the medial amygdala than both Control and antagonist-treated males and immediate early gene activity of V1aR neurons in the medial amygdala was positively correlated with affiliation. Antagonist treated males showed decreased activity in the medial amygdala. In addition, there was a negative correlation between the activity of V1aR cells in the medial bed nucleus of the stria terminalis and singing. Treatment also affected the expression of V1aR and activity in the lateral septum, but this was not correlated with any behaviors measured. These results provide evidence that AVT and V1aR play developmental roles in specific pair maintenance behaviors and the neural substrate underlying these behaviors in a bird. PMID:27065824

  8. Early Life Manipulations of the Nonapeptide System Alter Pair Maintenance Behaviors and Neural Activity in Adult Male Zebra Finches

    Directory of Open Access Journals (Sweden)

    Nicole M. Baran

    2016-03-01

    Full Text Available Adult zebra finches (T. guttata form socially monogamous pair bonds characterized by proximity, vocal communication, and contact behaviors. In this experiment, we tested whether manipulations of the nonapeptide hormone arginine vasotocin (AVT, avian homologue of vasopressin and the V1a receptor (V1aR early in life altered species-typical pairing behavior in adult zebra finches of both sexes. Although there was no effect of treatment on the tendency to pair in either sex, males in different treatments exhibited profoundly different profiles of pair maintenance behavior. Following a brief separation, AVT-treated males were highly affiliative with their female partner but sang very little compared to Controls. In contrast, males treated with a V1aR antagonist sang significantly less than Controls, but did not differ in affiliation. These effects on behavior in males were also reflected in changes in the expression of V1aR and immediate early gene activity in three brain regions known to be involved in pairing behavior in birds: the medial amygdala, medial bed nucleus of the stria terminalis, and the lateral septum. AVT males had higher V1aR expression in the medial amygdala than both Control and antagonist-treated males and immediate early gene activity of V1aR neurons in the medial amygdala was positively correlated with affiliation. Antagonist treated males showed decreased activity in the medial amygdala. In addition, there was a negative correlation between the activity of V1aR cells in the medial bed nucleus of the stria terminalis and singing. Treatment also affected the expression of V1aR and activity in the lateral septum, but this was not correlated with any behaviors measured. These results provide evidence that AVT and V1aR play developmental roles in specific pair maintenance behaviors and the neural substrate underlying these behaviors in a bird.

  9. Secure Ad-hoc Pairing with Biometrics: SAfE

    OpenAIRE

    Buhan, Ileana; Doumen, Jeroen; Hartel, Pieter; Veldhuis, Raymond

    2007-01-01

    The pairing problem is to enable two devices, which share no prior context with each other, to agree upon a security association that they can use to protect their subsequent communication. Secure pairing should o®er guarantees of the association partner's identity and it should be resistant to eavesdropping or to a man-in the middle attack. We propose a user friendly solution to this problem. Keys extracted from images of the participants are used for authentication. Details of the SAfE pair...

  10. Cooper-Pair Injection into Topological Insulators and Helical Wires

    OpenAIRE

    Sato, Koji

    2013-01-01

    A Cooper-pair (CP) splitter is a device capable of spatially separating a pair of entangled electrons by sending a weak current from a superconductor (SC) to a pair of quantum dots or quantum wires. In this thesis, CP splitters based on quantum spin Hall insulators (QSHI), also known as two-dimensional topological insulator, and quantum wires are theoretically studied. Spin-entangled electrons can be extracted from the CP's in the SC, and transmitted by the helical electronic states hosted b...

  11. Manakov Soliton Pairs in Biased Photovoltaic Photorefractive Crystals

    Institute of Scientific and Technical Information of China (English)

    侯春风; 杜春光; 阿不都热苏力; 李师群

    2002-01-01

    We study, theoretically, incoherently coupled screening-photovoltaic soliton pairs in biased photovoltaic photorefractive crystals. It is shown that when the total intensity of two coupled solitons is much lower than the effective dark irradiance, the coupled soliton equations reduce to the Manakov equations. The dark-dark, bright-bright and dark-bright soliton pair solutions of these Manakov equations are obtained under an appropriate external bias field and a photovoltaic field, and the characteristics of these Manakov soliton pairs are also discussed in detail.

  12. Noise affecting photon pair generation in silicon wire waveguide

    CERN Document Server

    Clemmen, S; Bogaerts, W; Baets, R; Emplit, Ph; Massar, S

    2011-01-01

    We study quantitatively the weak source of noise that is present when correlated photons are produced via four wave mixing in silicon nanophotonic waveguides. First, we deduce the amont of noise from the dependance of the photon flux on the pump power. Second we caracterise the spectrum of the noise and of the pairs of photons which shows that the noise is due to a scattering of photons by a thermal bath. Third we show that the photon flux (noise plus pairs) is essentially instantaneous, and cannot therefore be attributed to carrier induced effects. We discuss our results and compare them to photon pair generation in silica fibers.

  13. Pairs in the light-front and covariance

    CERN Document Server

    Pacheco-Bicudo-Cabral de Melo, J; Frederico, T; Sauer, P U

    1998-01-01

    The electromagnetic current of bound systems in the light-front is constructed in the Breit-Frame, in the limit of momentum transfer $q^+=(q^0+q^3)$ vanishing. In this limit, the pair creation term survives and it is responsible for the covariance of the current. The pair creation term is computed for the $j^+$ current of a spin one composite particle in the Breit-frame. The rotational symmetry of $j^+$ is violated if the pair term is not considered.

  14. Can a wormhole be interpreted as an EPR pair?

    OpenAIRE

    Nikolic, H.

    2013-01-01

    Recently, Maldacena and Susskind arXiv:1306.0533 and Jensen and Karch arXiv:1307.1132 argued that a wormhole can be interpreted as an EPR pair. We point out that a convincing justification of such an interpretation would require a quantitative evidence that correlations between two ends of the wormhole are equal to those between the members of the EPR pair. As long as the existing results do not contain such evidence, the interpretation of wormhole as an EPR pair does not seem justified.

  15. Isospin Effect of the Pairing Correlation in Al Isotopes

    Institute of Scientific and Technical Information of China (English)

    ZHANG Hu-Yong; WANG Kun; SHEN Wen-Qing; REN Zhong-Zhou; MA Yu-Gang; CAI Xiang-Zhou; ZHONG Chen; WEI Yi-Bin CHEN Jin-Gen; ZHOU Xing-Fei; MA Guo-Liang

    2003-01-01

    The binding energies of Al isotopes are investigated by using the Skyrme-Hartree-Fock approach with the SKIII force parameter. Special emphasis is placed on the influence of the isospin effect of the pairing correlation on the proton separation energy. Calculations show that the Skyrme-Hartree-Fock approach provides a good description of the binding energy of Al isotopes with different forms of pairing correlation. Meanwhile, it is found that the isospin effect of the pairing correlation plays a great role to the separation energy when the Al isotopes approach the proton drip line.

  16. Breathing solitary-pulse pairs in a linearly coupled system

    CERN Document Server

    Dana, Brenda; Bahabad, Alon

    2014-01-01

    It is shown that pairs of solitary pulses (SPs) in a linearly-coupled system with opposite group-velocity dispersions form robust breathing bound states. The system can be realized by temporal-modulation coupling of SPs with different carrier frequencies propagating in the same medium, or by coupling of SPs in a dual-core waveguide. Broad SP pairs are produced in a virtually exact form by means of the variational approximation. Strong nonlinearity tends to destroy the periodic evolution of the SP pairs.

  17. String Pair Creations in D-brane Systems

    OpenAIRE

    Cho, Jin-Ho; Oh, Phillial; Park, Cheonsoo; Shin, Jonghyeon

    2005-01-01

    We investigate the criterion, on the Born-Infeld background fields, for the open string pair creation to occur in D$p$-(anti-)D$p$-brane systems. Although the pair creation occurs generically in both D$p$-D$p$ and D$p$-anti-D$p$ systems for the cases which meet the criterion, it is more drastic in D$p$-anti-D$p$-brane systems by some exponential factor depending on the background fields. Various configurations exhibiting pair creations are obtained via duality transformations. These include t...

  18. Dynamical behaviour of transverse plasmons in pair plasmas

    Institute of Scientific and Technical Information of China (English)

    Liu San-Qiu; Liu Yong; Li Xiao-Qing

    2011-01-01

    This paper analytically investigates the nonlinear behaviour of transverse plasmons in pair plasmas on the basis of the nonlinear governing equations obtained from Vlasov-Maxwell equations. It shows that high frequency transverse plasmons are modulationally unstable with respect to the uniform state of the pair plasma. Such an instability would cause wave field collapse into a localized region. During the collapse process, ponderomotive expulsion is greatly enhanced for the increase of wave field strength, leading to the formation of localized density cavitons which are significant for the future experimental research in the interaction between high frequency electromagnetic waves and pair plasmas.

  19. Molecular Motion in Frustrated Lewis Pair Chemistry: insights from modelling

    OpenAIRE

    Pu, Maoping

    2015-01-01

    Mechanisms of reactions of the frustrated Lewis pairs (FLPs) with carbon dioxide (CO2) and hydrogen (H2) are studied by using quantum chemical modelling. FLPs are relatively novel chemical systems in which steric effects prevent a Lewis base (LB) from donating its electron pair to a Lewis acid (LA). From the main group of the periodic table, a variety of the electron pair donors and acceptors can create an FLP and the scope of the FLP chemistry is rapidly expanding at present. Representative ...

  20. State-dependent pairing fields in rotating nuclei

    International Nuclear Information System (INIS)

    In the present thesis the properties of state-dependent pairing and its influence on the nuclear rotation were studied. For this the HFBC equations were solved by a new developed method in a model with a Nilsson operator for the single-particle part and the surface-delta interaction for the generation of the self-consistently calculated pairing fields. The agreement with the experimental data was improved in all considered cases by regarding the higher multipoles (state-dependent pairing). (orig./HSI)

  1. Processing Constrained K Closest Pairs Query in Spatial Databases

    Institute of Scientific and Technical Information of China (English)

    LIU Xiaofeng; LIU Yunsheng; XIAO Yingyuan

    2006-01-01

    In this paper, constrained K closest pairs query is introduced, which retrieves the K closest pairs satisfying the given spatial constraint from two datasets. For data sets indexed by R-trees in spatial databases, three algorithms are presented for answering this kind of query. Among of them,two-phase Range+Join and Join+Range algorithms adopt the strategy that changes the execution order of range and closest pairs queries, and constrained heap-based algorithm utilizes extended distance functions to prune search space and minimize the pruning distance. Experimental results show that constrained heap-base algorithm has better applicability and performance than two-phase algorithms.

  2. Pair production from residues of complex worldline instantons

    CERN Document Server

    Ilderton, Anton; Wårdh, Jonatan

    2015-01-01

    We use worldline instantons to study nonperturbative electron-positron pair production in strong electric fields. We show that the instantons are complex for fields with lightlike inhomogeneities, and that their contribution to the pair production probability is a contour integral over the instantons themselves. We use this to recast pair production in the language of Cauchy's residue theorem. The instantons contribute residues from the poles they circulate, leading to locality of the effective action. The invariance of complex integrals under contour deformation manifests in the instanton contributions as invariance under a set of generalised, complex, reparameterisations.

  3. Effective field theory for dilute fermions with pairing

    International Nuclear Information System (INIS)

    Effective field theory (EFT) methods for a uniform system of fermions with short-range, natural interactions are extended to include pairing correlations, as part of a program to develop a systematic Kohn-Sham density functional theory (DFT) for medium and heavy nuclei. An effective action formalism for local composite operators leads to a free-energy functional that includes pairing by applying an inversion method order by order in the EFT expansion. A consistent renormalization scheme is demonstrated for the uniform system through next-to-leading order, which includes induced-interaction corrections to pairing

  4. QED peripheral mechanism of pair production at colliders

    CERN Document Server

    Ahmadov, A I; Bystritskiy, Yu M; Kuraev, E A; Shatnev, M G

    2008-01-01

    Cross section of the processes of neutral pion production as well as pairs of charged fermions and bosons in peripherical interaction of leptons, photons are calculated in main logarithmical approximation. We investigate the phase volumes and differential cross sections. The differential cross section of few neutral pions and a few pairs production are written down explicitly. Considering the academic problem of summation on the number of pairs for the case of massless particles we reproduce the known results obtained in seventies of last century. The possibility to construct the generator for Monte-Carlo modeling of this processes basing of this results are discussed.

  5. Brain Activation during Memory Encoding in Type 2 Diabetes Mellitus: A Discordant Twin Pair Study

    Directory of Open Access Journals (Sweden)

    Amanda G. Wood

    2016-01-01

    Full Text Available Type 2 diabetes mellitus increases the risk of dementia and neuronal dysfunction may occur years before perceptible cognitive decline. We aimed to study the impact of type 2 diabetes on brain activation during memory encoding in middle-aged people, controlling for age, sex, genes, and early-shared environment. Twenty-two twin pairs discordant for type 2 diabetes mellitus (mean age 60.9 years without neurological disease were recruited from the Australian Twin Registry (ATR and underwent functional magnetic resonance imaging (fMRI during a memory encoding task, cognitive tests, and structural MRI. Type 2 diabetes was associated with significantly reduced activation in left hemisphere temporoparietal regions including angular gyrus, supramarginal gyrus, and middle temporal gyrus and significantly increased activation in bilateral posteriorly distributed regions. These findings were present in the absence of within-pair differences in standard cognitive test scores, brain volumes, or vascular lesion load. Differences in activation were more pronounced among monozygotic (MZ pairs, with MZ individuals with diabetes also displaying greater frontal activation. These results provide evidence for preclinical memory-related neuronal dysfunction in type 2 diabetes. They support the search for modifiable later-life environmental factors or epigenetic mechanisms linking type 2 diabetes and cognitive decline.

  6. Schistosome sex matters: a deep view into gonad-specific and pairing-dependent transcriptomes reveals a complex gender interplay.

    Science.gov (United States)

    Lu, Zhigang; Sessler, Florian; Holroyd, Nancy; Hahnel, Steffen; Quack, Thomas; Berriman, Matthew; Grevelding, Christoph G

    2016-01-01

    As a key event for maintaining life cycles, reproduction is a central part of platyhelminth biology. In case of parasitic platyhelminths, reproductive processes can also contribute to pathology. One representative example is the trematode Schistosoma, which causes schistosomiasis, an infectious disease, whose pathology is associated with egg production. Among the outstanding features of schistosomes is their dioecious lifestyle and the pairing-dependent differentiation of the female gonads which finally leads to egg synthesis. To analyze the reproductive biology of Schistosoma mansoni in-depth we isolated complete ovaries and testes from paired and unpaired schistosomes for comparative RNA-seq analyses. Of >7,000 transcripts found in the gonads, 243 (testes) and 3,600 (ovaries) occurred pairing-dependently. Besides the detection of genes transcribed preferentially or specifically in the gonads of both genders, we uncovered pairing-induced processes within the gonads including stem cell-associated and neural functions. Comparisons to work on neuropeptidergic signaling in planarian showed interesting parallels but also remarkable differences and highlights the importance of the nervous system for flatworm gonad differentiation. Finally, we postulated first functional hints for 235 hypothetical genes. Together, these results elucidate key aspects of flatworm reproductive biology and will be relevant for basic as well as applied, exploitable research aspects.

  7. Schistosome sex matters: a deep view into gonad-specific and pairing-dependent transcriptomes reveals a complex gender interplay.

    Science.gov (United States)

    Lu, Zhigang; Sessler, Florian; Holroyd, Nancy; Hahnel, Steffen; Quack, Thomas; Berriman, Matthew; Grevelding, Christoph G

    2016-01-01

    As a key event for maintaining life cycles, reproduction is a central part of platyhelminth biology. In case of parasitic platyhelminths, reproductive processes can also contribute to pathology. One representative example is the trematode Schistosoma, which causes schistosomiasis, an infectious disease, whose pathology is associated with egg production. Among the outstanding features of schistosomes is their dioecious lifestyle and the pairing-dependent differentiation of the female gonads which finally leads to egg synthesis. To analyze the reproductive biology of Schistosoma mansoni in-depth we isolated complete ovaries and testes from paired and unpaired schistosomes for comparative RNA-seq analyses. Of >7,000 transcripts found in the gonads, 243 (testes) and 3,600 (ovaries) occurred pairing-dependently. Besides the detection of genes transcribed preferentially or specifically in the gonads of both genders, we uncovered pairing-induced processes within the gonads including stem cell-associated and neural functions. Comparisons to work on neuropeptidergic signaling in planarian showed interesting parallels but also remarkable differences and highlights the importance of the nervous system for flatworm gonad differentiation. Finally, we postulated first functional hints for 235 hypothetical genes. Together, these results elucidate key aspects of flatworm reproductive biology and will be relevant for basic as well as applied, exploitable research aspects. PMID:27499125

  8. Instructions for use of standardized pair count field forms

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — Standardized instructions of waterfowl pair count forms for use in the Four-Square Mile survey on Wetland Management Districts. These forms have been designed for...

  9. Polarization operator approach to pair creation in short laser pulses

    CERN Document Server

    Meuren, Sebastian; Keitel, Christoph H; Di Piazza, Antonino

    2014-01-01

    We investigate the nonlinear Breit-Wheeler process inside short laser pulses, i.e. the creation of an electron-positron pair induced by a gamma photon inside a plane-wave background field. To obtain the total pair-creation probability we verify (to leading-order) the cutting rule for the polarization operator in the realm of strong-field QED by an explicit calculation. Furthermore, a double-integral representation for the leading-order contribution to the field-dependent part of the polarization operator is derived. The combination of both results yields a compact expression for the total pair-creation probability inside an arbitrary plane-wave background field. It is shown numerically that with presently available technology pair-creation probabilities of the order of ten percent could be reached for a single gamma photon.

  10. Latest theory developments for top pair production, generators and showering

    CERN Document Server

    Re, Emanuele

    2016-01-01

    I summarize the state of the art of cross-section computations and of available simulation tools for top-quark pair production in hadron collisions. Particular emphasis is put on recent theory developments relevant for LHC phenomenology.

  11. Observation of muon-electron pairs in neutrino reactions

    International Nuclear Information System (INIS)

    The present thesis describes the observation of muon-electron pairs in neutrino reactions. This experiment was performed using an optical multiplate spark chamber in the broad band neutrino beam of the CERN proton synchrotron. (orig.)

  12. Wind power wetland survey and duck pair count instructions

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — Initial Survey Instructions for wind power wetland survey and duck pair count instructions for Kulm Wetland Management District. This survey has two surveying...

  13. Formation of slow shock pairs associated with coronal mass ejections

    Science.gov (United States)

    Whang, Y. V.

    1990-01-01

    The formation of a forward-reverse slow shock pair in the solar corona is presently simulated by an MHD model that uses the Rankine-Hugoniot solution to calculate the flow-property jumps at all shock crossings. The shocks divide the solution-domain into several continuous flow regions whose respective governing characteristics are solved by the method of characteristics. The plasma impact compresses the plasma near the front of the coronal mass ejection (CME); as the CME-associated slow shock pair moves outwards in interplanetary space, it evolves into a pair of fast shocks. All three phenomena are eventually manifested in interplanetary space as a magnetic cloud accompanied by a fast shock pair, with a forward shock preceding the cloud and a reverse shock appearing either within or behind the cloud.

  14. Close Pairs as Proxies for Galaxy Cluster Mergers

    CERN Document Server

    Wetzel, Andrew R; Holz, Daniel E; Warren, Michael S

    2007-01-01

    Galaxy cluster merger statistics are an important component in understanding the formation of large-scale structure. Cluster mergers are also potential sources of systematic error in the mass calibration of upcoming cluster surveys. It is difficult to study merger properties and evolution directly because the identification of cluster mergers in observations is problematic. We use large N-body simulations to study the statistical properties of massive halo mergers, specifically investigating the utility of close halo pairs as proxies for mergers. We examine the relationship between pairs and mergers for a wide range of merger timescales, halo masses, and redshifts (0pairs in measuring the merger bias. We find the use of pairs as merger proxies is of limited value in observations, particularly when considering the effects of redshift space distortions. While our analysis focuses on cluster-mass halos, we find evidence that our results are applicable to galaxy-mass h...

  15. Nuclear pairing within a configuration-space Monte Carlo approach

    Science.gov (United States)

    Lingle, Mark; Volya, Alexander

    2015-06-01

    Pairing correlations in nuclei play a decisive role in determining nuclear drip lines, binding energies, and many collective properties. In this work a new configuration-space Monte Carlo (CSMC) method for treating nuclear pairing correlations is developed, implemented, and demonstrated. In CSMC the Hamiltonian matrix is stochastically generated in Krylov subspace, resulting in the Monte Carlo version of Lanczos-like diagonalization. The advantages of this approach over other techniques are discussed; the absence of the fermionic sign problem, probabilistic interpretation of quantum-mechanical amplitudes, and ability to handle truly large-scale problems with defined precision and error control are noteworthy merits of CSMC. The features of our CSMC approach are shown using models and realistic examples. Special attention is given to difficult limits: situations with nonconstant pairing strengths, cases with nearly degenerate excited states, limits when pairing correlations in finite systems are weak, and problems when the relevant configuration space is large.

  16. Gluino Pair Production at the LHC: The Threshold

    CERN Document Server

    Kauth, Matthias R; Marquard, Peter; Steinhauser, Matthias

    2011-01-01

    The next-to-leading order analysis of the cross section of hadronic gluino pair production close to threshold is presented. Within the framework of non-relativistic QCD a significant enhancement compared to fixed order perturbation theory is observed which originates from the characteristic remnant of the 1S peak below the nominal pair threshold. This enhancement is similar to the corresponding one for top production. However, as a consequence of the larger colour factor of the QCD potential the effect is significantly enhanced. The analysis includes all colour configurations of S-wave gluino pairs, i.e. singlet, symmetric and antisymmetric octet, decuplet and twenty-seven representation. Matching coefficients involving real and virtual radiation are separately evaluated for all colour and spin configurations and initial states. We concentrate on the case of gluino decay rates comparable to the gluino binding energy. The non-relativistic dynamics of the gluino pair is solved by calculating the Green's functio...

  17. Pair Production in Near Extremal Kerr-Newman Black Holes

    CERN Document Server

    Chen, Chiang-Mei; Sun, Jia-Rui; Tang, Fu-Yi

    2016-01-01

    The spontaneous pair production of charged scalars in a near extremal Kerr-Newman (KN) black hole is analytically studied. It is shown that the existence condition for the pair production is equivalent to the violation of the Breitenlohner-Freedman bound in an AdS$_2$ space. The mean number of produced pairs in the extremal black hole has a thermal interpretation, in which the effective temperature for the Schwinger effect in the AdS$_2$ space persistently holds, while the mean number in the near extremal black hole has an additional factor of the Schwinger effect in the Rindler space. In addition, the holographic dual conformal field theory (CFT) descriptions of the charged scalar pair production are respectively realized both in the $J$ and $Q$ pictures in terms of the KN/CFTs correspondence.

  18. Dependence of Two-proton Radioactivity on Nuclear Pairing Models

    CERN Document Server

    Oishi, Tomohiro; Pastore, Alessandro

    2016-01-01

    The sensitivity of two-proton emitting decays to the nuclear pairing correlation is discussed within a time-dependent three-body model. We focus on the $^6$Be nucleus assuming $\\alpha + p + p$ configuration, and its decay process is described as a time-evolution of the three-body resonance state. A noticeable model-dependence of two-proton decay width is found by utilizing schematic density-dependent contact (SDDC) and the finite-range Minnesota pairing models. The model-dependence with the SDDC pairing interaction can be understood from the density distribution of the resonance state, which reflects a synergy of participating interactions. Our result suggests that two-proton decay width may be a suitable reference quantity to sophisticate the nuclear pairing model beyond the nucleon driplines.

  19. Extended Homogeneous Balance Method and Lax Pairs, Backlund Transformation

    Institute of Scientific and Technical Information of China (English)

    BAI ChengLin

    2002-01-01

    Using the extended homogeneous balance method, which is very concise and primary, Lax pairs and Backlund transformation for most nonlinear evolution equations, such as the compound KdV-Burgers equation and nonlinear diffusion equation are obtained.

  20. An electrically injected photon-pair source at room temperature

    CERN Document Server

    Boitier, Fabien; Autebert, Claire; Lemaître, Aristide; Galopin, Elisabeth; Manquest, Christophe; Sirtori, Carlo; Favero, Ivan; Leo, Giuseppe; Ducci, Sara

    2013-01-01

    One of the main challenges for future quantum information technologies is miniaturization and integration of high performance components in a single chip. In this context, electrically driven sources of non-classical states of light have a clear advantage over optically driven ones. Here we demonstrate the first electrically driven semiconductor source of photon pairs working at room temperature and telecom wavelength. The device is based on type-II intracavity Spontaneous Parametric Down-Conversion in an AlGaAs laser diode and generates pairs at 1.57 $\\mu$m. Time-correlation measurements of the emitted pairs give an internal generation efficiency of $7 \\times 10^{-11}$ pairs/injected electron. The capability of our platform to support generation, manipulation and detection of photons opens the way to the demonstration of massively parallel systems for complex quantum operations.