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Sample records for ciliophora

  1. The valid name for the genus Loxocephalus Foerster, 1862 (Insecta, Hymenoptera: Braconidae), preoccupied by Loxocephalus Eberhard, 1862 (Protozoa: Ciliophora)

    NARCIS (Netherlands)

    Foissner, W.; Achterberg, van C.

    1997-01-01

    Loxocephalus Foerster, 1862 (Insecta: Braconidae) is preoccupied by Loxocephalus Eberhard, 1862 (Protozoa: Ciliophora). The name previously used for Loxocephalus Foerster, Myiocephalus Marshall, 1897, becomes the valid name for the genus.

  2. Microfaunal indicators, Ciliophora phylogeny and protozoan population shifts in an intermittently aerated and fed bioreactor

    Energy Technology Data Exchange (ETDEWEB)

    Ntougias, Spyridon, E-mail: sntougia@env.duth.gr [Democritus University of Thrace, Department of Environmental Engineering, Laboratory of Wastewater Management and Treatment Technologies, Vas. Sofias 12, 67100 Xanthi (Greece); Tanasidis, Spartakos; Melidis, Paraschos [Democritus University of Thrace, Department of Environmental Engineering, Laboratory of Wastewater Management and Treatment Technologies, Vas. Sofias 12, 67100 Xanthi (Greece)

    2011-02-28

    Microfauna community structure was examined in the mixed liquor of a bench-scale bioreactor equipped with an intermittent aeration and feeding system. The reactor was operated under an intermittent aeration of 25 min in every 1 h and varying feeding conditions (0.264, 0.403 and 0.773 kg BOD{sub 5}/m{sup 3} d). A total of 14 protozoan and metazoan taxa were identified by microscopic examination. Sessile ciliates, followed by crawling ciliates, were the major protozoan groups under 0.403 kg BOD{sub 5}/m{sup 3} d organic loading conditions, while sessile ciliate population was remarkably increased under an organic loading of 0.773 kg BOD{sub 5}/m{sup 3} d. Principal Component Analysis and Pearson correlation coefficient tests were performed in order to reveal relationships between microfauna community and operational parameters. Ciliophora specific-18S rRNA gene clone library was constructed to identify ciliate diversity under 0.773 kg BOD{sub 5}/m{sup 3} d organic loading conditions. Ciliophora diversity consisted of members of Aspidiscidae, Epistylidae, Opisthonectidae and Vorticellidae, with the majority of the clones being associated with the species Vorticella fusca. At least one novel phylogenetic linkage among Ciliophora was identified. Comparisons made after molecular characterization and microscopic examination of Ciliophora community showed that the estimation of broad ciliate groups is useful for ecological considerations and evaluation of the operational conditions in wastewater treatment plants.

  3. Microfaunal indicators, Ciliophora phylogeny and protozoan population shifts in an intermittently aerated and fed bioreactor

    International Nuclear Information System (INIS)

    Microfauna community structure was examined in the mixed liquor of a bench-scale bioreactor equipped with an intermittent aeration and feeding system. The reactor was operated under an intermittent aeration of 25 min in every 1 h and varying feeding conditions (0.264, 0.403 and 0.773 kg BOD5/m3 d). A total of 14 protozoan and metazoan taxa were identified by microscopic examination. Sessile ciliates, followed by crawling ciliates, were the major protozoan groups under 0.403 kg BOD5/m3 d organic loading conditions, while sessile ciliate population was remarkably increased under an organic loading of 0.773 kg BOD5/m3 d. Principal Component Analysis and Pearson correlation coefficient tests were performed in order to reveal relationships between microfauna community and operational parameters. Ciliophora specific-18S rRNA gene clone library was constructed to identify ciliate diversity under 0.773 kg BOD5/m3 d organic loading conditions. Ciliophora diversity consisted of members of Aspidiscidae, Epistylidae, Opisthonectidae and Vorticellidae, with the majority of the clones being associated with the species Vorticella fusca. At least one novel phylogenetic linkage among Ciliophora was identified. Comparisons made after molecular characterization and microscopic examination of Ciliophora community showed that the estimation of broad ciliate groups is useful for ecological considerations and evaluation of the operational conditions in wastewater treatment plants.

  4. Spirostomum spp. (Ciliophora, Protista), a suitable system for endocytobiosis research.

    Science.gov (United States)

    Fokin, S I; Schweikert, M; Brümmer, F; Görtz, H-D

    2005-04-01

    Among ciliate genera, only Paramecium and Euplotes species have been studied extensively as host organisms of bacterial endocytobionts. In this article, we show that members of the genus Spirostomum may also serve as a suitable system for endocytobiosis research. Two strains of Spirostomum minus (Heterotrichea, Ciliophora) collected in Germany and Italy, respectively, were found to harbor different types of bacterial infections. Bacteria of various sizes and shapes were observed in the cytoplasm or in the nuclei of the ciliates. The bacteria in the cytoplasm were either surrounded by a peribacterial membrane or lay naked. One of the bacterial species was found in the vicinity of the contractile fibrillar system (myonemes) of the ciliates. In rare cases, another type of bacteria was observed associated with mitochondria. The macronuclei of both the Italian and the German strains were crowded with endocytobionts. The endonuclear bacteria in the two S. minus strains differed with respect to their cytoplasmic structures but they were of similar size and both were rod shaped. According to the results of in situ hybridization, the endonuclear bacteria of the Italian strain belong to the subgroup of alphaproteobacteria, whereas the bacteria associated with the fibrillar system appeared to be gram-positive bacteria with high G+C content. While both the German and the Italian strains were found to permanently maintain their endocytobionts, they were at least partly colonized by different bacteria. This is taken as an indication that geographically separated populations of ciliates may be stably infected by different endocytobionts, possibly due to different ecological conditions. For S. minus and S. ambiguum a total of 7 different bacterial endocytobionts have now been recorded. We recommend the members of the genus Spirostomum as a suitable system for endocytobiosis research. PMID:15868216

  5. First record of an epibiont protozoan Epistylis sp. (Ciliophora, Peritrichia) attached to Ergasilus chelangulatus (Ergasilidae) in Brazil.

    Science.gov (United States)

    Azevedo, R K; Brandão, H; Abdallah, V D; Silva, R J

    2014-05-01

    In the present paper, we described the first record of an epibiont protozoan Epistylis sp. Ehrenberg, 1830 (Ciliophora, Peritrichia) attached to Ergasilus chelangulatus Thatcher and Brasil-Sato, 2008, parasite of Pimelodus maculatus Lacépède, 1803 in Brazil, with electron microscope observations. Fish were collected in Veados River, state of São Paulo and the crustacean Ergasilus chelangulatus being registered for the first time in this river, expanding its geographical distribution in Brazil. PMID:25166331

  6. Assessing Whether Alpha-Tubulin Sequences Are Suitable for Phylogenetic Reconstruction of Ciliophora with Insights into Its Evolution in Euplotids

    OpenAIRE

    Yi, Zhenzhen; Katz, Laura A.; Song, Weibo

    2012-01-01

    The current understanding of ciliate phylogeny is mainly based on analyses of a single gene, the small subunit ribosomal RNA (SSU-rDNA). However, phylogenetic trees based on single gene sequence are not reliable estimators of species trees, and SSU-rDNA genealogies are not useful for resolution of some branches within Ciliophora. Since congruence between multiple loci is the best tool to determine evolutionary history, we assessed the usefulness of alpha-tubulin gene, a protein-coding gene th...

  7. Further insights into the phylogeny of two ciliate classes Nassophorea and Prostomatea (Protista, Ciliophora).

    Science.gov (United States)

    Zhang, Qianqian; Yi, Zhenzhen; Fan, Xinpeng; Warren, Alan; Gong, Jun; Song, Weibo

    2014-01-01

    The Nassophorea and Prostomatea are two of the key classes in understanding the morphological diversification and higher classification of the phylum Ciliophora. However, their phylogenetic relationships with other ciliate groups within the subphylum Intramacronucleata remain elusive. In this study, we investigated the small and large subunit (SSU and LSU) rRNA gene-based phylogeny of these groups with sequences of additional taxa including several key species. The results show that: (1) the class Nassophorea remains polyphyletic, with the microthoracids clustering with the Phyllopharyngea, whereas the nassulids represent a basal group of the CONthreeP superclade in the SSU tree; (2) the Prostomatea is not depicted as a monophyletic group in phylogenetic trees, and the monophyly of this class is marginally rejected by statistical tree topology tests; (3) the nassulid genus Parafurgasonia is more closely related to the family Colpodidiidae than to Furgasonia; (4) Paranassula, which was previously thought to be a nassulid, is phylogenetically related to the oligohymenophorean peniculids in both the SSU and LSU trees; (5) the microthoracid genus Discotricha does not group with the other microthoracids in either SSU or LSU trees; (6) the family Plagiocampidae is closely related to the prostome parasite Cryptocaryon irritans and to the family Urotrichidae in the order Prorodontida; and (7) the family Placidae, represented by Placus salinus, is sister to the family Holophryidae in the order Prorodontida. Based on the present data, we consider the genus Discotricha to be an unclassified taxon within the CONthreeP. We also propose resurrecting the order Paranassulida and classifying it within the subclass Peniculia, class Oligohymenophorea. Primary and secondary structure signatures for higher taxa within Phyllopharyngea and Nassophorea are supplied. PMID:24075983

  8. Multigene-based analyses on evolutionary phylogeny of two controversial ciliate orders: Pleuronematida and Loxocephalida (Protista, Ciliophora, Oligohymenophorea).

    Science.gov (United States)

    Gao, Feng; Katz, Laura A; Song, Weibo

    2013-07-01

    Relationships among members of the ciliate subclass Scuticociliatia (Ciliophora, Oligohymenophorea) are largely unresolved. Phylogenetic studies of its orders Pleuronematida and Loxocephalida were initially based on small subunit ribosomal RNA gene (SSU-rDNA) analyses of a limited number of taxa. Here we characterized 37 sequences (SSU-rDNA, ITS-5.8S and LSU-rDNA) from 21 taxonomically controversial members of these orders. Phylogenetic trees constructed to assess the inter- and intra-generic relationships of pleuronematids and loxocephalids reveal the following: (1) the order Loxocephalida and its two families Loxocephalidae and Cinetochilidae are not monophyletic when more taxa are added; (2) the core pleuronematids are divided into two fully supported clades, however, the order Pleuronematida is not monophyletic because Cyclidium glaucoma is closer to Thigmotrichida; (3) the family Pleuronematidae and the genus Schizocalyptra are monophyletic, though rDNA sequences of Pleuronema species are highly variable; (4) Pseudoplatynematum and Sathrophilus are closely related to the subclass Astomatia, while Cinetochilum forms a monophyletic group with the subclass Apostomatia; and (5) Hippocomos falls in the order Pleuronematida and is closely related to Eurystomatellidae and Cyclidium plouneouri. Further, in an effort to provide a better resolution of evolutionary relationships, the secondary structures of ITS2 transcripts and the variable region 4 (V4) of the small subunit ribosomal RNA (SSU-rRNA) are predicted, revealing that ITS2 structures are conserved at the order level while V4 region structures are more variable than ITS2 structures. PMID:23541839

  9. Acute Toxicities of Potassium Permanganate, Formalin, and Lugol's Iodine Solution to a Marine Ciliate,Pleuronema coronatum ( Ciliophora, Scuticociliatida)

    Institute of Scientific and Technical Information of China (English)

    QIU Yantao; SONG Weibo

    2002-01-01

    Acute toxicities of potassium permanganate, formalin, and Lugol's iodine solution to a commonly occurred ma-rine ciliate Pleuronema coronatum (Ciliophora, Scuticociliatida) were measured. Linear regression analysis of the resultshighlighted the close relationships between doses of the medicines and mortalities of the organisms, thus providing a capabili-ty to predict toxicity effects from the dose. Toxic effects of the medicines on the ciliates were described in the present paper,and the median lethal concentrations (LC50 values) were given. Results of measurements indicated that 2 h-LC50 and 12 h-LC50 values of formalin on P. coronatum were 59.00 × 10-6 and 43.57 × 10 6, while those of Lugol's solutions were 90.13 and67.84 × 10 6 respectively. The tolerance of P. coronatum to formalin is apparently lower than that to Lugol' s iodine solutionand potassium permanganate is a suitable medicine to kill ciliates in short time.

  10. High cryptic soil ciliate (Ciliophora, Hypotrichida) diversity in Australia.

    Science.gov (United States)

    Kumar, Santosh; Foissner, Wilhelm

    2016-04-01

    The diversity and distribution of soil ciliates from Australia is poorly known. Thus, we studied eight taxa, using the non-flooded Petri dish culture method, live observation, silver impregnation, detailed morphometrics, ontogenesis, and reinvestigation of type slides. At first glance, the Australian taxa looked very similar to described species, however, detailed investigations resulted in the identification of six cryptic species: Afroamphisiella multinucleata minima nov. subspec., Cladotricha similis nov. spec., Erimophrya similis nov. spec., Heterogonostomum salinarum nov. gen., nov. spec., Pseudohemisincirra arabica australiensis nov. subspec., and Pattersoniella (Pattersoniellides) australiensis nov. subgen., nov. spec. This new subgenus is unique among all described hypotrichs in having reduced some anterior paroral dikinetids the fibrillar associates of which are, however, still present. Only two of the eight taxa are possibly cosmopolitans: Apourosomoida halophilaFoissner et al., 2002 and Urosoma karinaeFoissner, 1987. This supports the moderate endemicity model, i.e., that a third of protists have a restricted distribution (Foissner, Chao and Katz 2008). PMID:26844781

  11. Chemoattraction of Ichthyophthirius multifiliis (Ciliophora) theronts to host molecules

    DEFF Research Database (Denmark)

    Buchmann, Kurt; Nielsen, Michael Engelbrecht

    1999-01-01

    not attract theronts. In contrast, sera and mucus from a range of teleosts (including marine fish) were effective attractants. Fractionation by gel filtration of fish serum allowed determination of the molecular size of the attracting proteins. Further biochemical studies suggested the...

  12. Hyaline Tintinnina (Protozoa-Ciliophora-Oligotrichida from northeast Brazilian coastal reefs

    Directory of Open Access Journals (Sweden)

    Roberto Sassi

    1989-01-01

    Full Text Available Seven species of hyaline Tintinnina were obtained from plankton samples collected near the coastal reefs of Ponta do Seixas (Lat. 7º09'16"S, Long. 34º4735"W, Northeastern Brazil, from April 1981 to May 1982 and from April 1983 to May 1984: Amphorellopsis acuta (Schmidt, 1901, Dadayiella ganymedes (Entz Sr., 1884, Epiplocyloides reticulata (Ostenfeld & Schmidt, 1901, Eutintinnus tubulosus (Ostenfeld, 1899, Favella ehrenbergi (Claparède & Lachmann, 1858, Metacylis mereschkowskyi Kofoid & Campbell, 1929 and M. perspicax (Hada, 1938. The most frequent and abundant species were M. mereschkowskyi and F. ehrenbergi. Except/.ganymedes, E. reticulata and F. ehrenbergi all species are new records from Brazil. Metacylis perspicax is also the seventh world register. For all species we provide description, drawings, measurements, seasonal occurrence, world distribution and some systematic comments.

  13. An overview of Suctorian ciliates (Ciliophora, Suctorea) as epibionts of halacarid mites (Acari, Halacaridae)

    Digital Repository Service at National Institute of Oceanography (India)

    Dovgal, I.; Chatterjee, T.; Ingole, B.S.

    of Learning, I.S.M. Annexe, P.O. – I.S.M., Dhanbad-826004, Jharkhand, India. E-mail: drtchatterjee@yahoo.co.in 3 Biological Oceanography Division, National Institute of Oceanography, Dona Paula, Goa-403004, India. E-mail: baban@nio.org Abstract Scant... lived predominantly on halacarid adults and deutonymphs, and rarely on protonymphs and larvae because of short life span in protonymph and larva stages. Analysis of the literature and our own data have shown that only four suctorian species observed...

  14. Tolerance of ciliated protozoan Paramecium bursaria (Protozoa, Ciliophora) to ammonia and nitrites

    Science.gov (United States)

    Xu, Henglong; Song, Weibo; Lu, Lu; Alan, Warren

    2005-09-01

    The tolerance to ammonia and nitrites in freshwater ciliate Paramecium bursaria was measured in a conventional open system. The ciliate was exposed to different concentrations of ammonia and nitrites for 2h and 12h in order to determine the lethal concentrations. Linear regression analysis revealed that the 2h-LC50 value for ammonia was 95.94 mg/L and for nitrite 27.35 mg/L using probit scale method (with 95% confidence intervals). There was a linear correlation between the mortality probit scale and logarithmic concentration of ammonia which fit by a regression equation y=7.32 x 9.51 ( R 2=0.98; y, mortality probit scale; x, logarithmic concentration of ammonia), by which 2 h-LC50 value for ammonia was found to be 95.50 mg/L. A linear correlation between mortality probit scales and logarithmic concentration of nitrite is also followed the regression equation y=2.86 x+0.89 ( R 2=0.95; y, mortality probit scale; x, logarithmic concentration of nitrite). The regression analysis of toxicity curves showed that the linear correlation between exposed time of ammonia-N LC50 value and ammonia-N LC50 value followed the regression equation y=2 862.85 e -0.08 x ( R 2=0.95; y, duration of exposure to LC50 value; x, LC50 value), and that between exposed time of nitrite-N LC50 value and nitrite-N LC50 value followed the regression equation y=127.15 e -0.13 x ( R 2=0.91; y, exposed time of LC50 value; x, LC50 value). The results demonstrate that the tolerance to ammonia in P. bursaria is considerably higher than that of the larvae or juveniles of some metozoa, e.g. cultured prawns and oysters. In addition, ciliates, as bacterial predators, are likely to play a positive role in maintaining and improving water quality in aquatic environments with high-level ammonium, such as sewage treatment systems.

  15. Taxonomic Redescription of Loxophyllum perihoplophorum and L. rostratum (Ciliophora: Pleurostomatida from Korea

    Directory of Open Access Journals (Sweden)

    Kim, Se-Joo

    2015-10-01

    Full Text Available Two pleurostomatid ciliates, Loxophyllum perihoplophorum Buddenbrock, 1920 and L. rostratum Cohn, 1866, were collected from the coastal waters of the East Sea, Korea. Their morphologies are described based on live observation and protargol staining, and morphometrics are provided. Loxophyllum perihoplophorum is characterized by the following features: 200-650 μm long in vivo; body slender leaf-shaped, flexible and contractile, with thin and wide extrusome-belted zone; 2 macronuclear nodules (Ma and 1 micronucleus (Mi; 7-9 contractile vacuoles (CV positioned along dorsal margin; extrusomes (Ex evenly distributed along edge of entire body, with about 10 dorsal warts (Wa; 9-11 left (LSK and 19-22 right somatic kineties (RSK, 4-5 furrows (Fu on left side. Loxophyllum rostratum is about 100-130 μm long in vivo; body oblate leaf-shaped, contractile, convex ventral side and S-shaped dorsal side, beak-like anterior end; 2 Ma and 1 Mi; 1 CV terminally located; Ex distributed along edge of entire body, with about 9-10 dorsal Wa; 7-8 LSK and 15-19 RSK, ca. 5 Fu on left body side. In addition, sequences of small subunit ribosomal DNA were determined from these two Loxophyllum species and compared with the known Loxophyllum sequences.

  16. Aphanius sophiae (Actinoptrygii, Cyprinodontidae), a new host for Ichthyophthirius multifiliis (Ciliophora) reported from Iran.

    Science.gov (United States)

    Gholami, Zeinab; Youssefi, Mohammad Reza; Marhaba, Zahra; Alizadeh, Abbas; Rahimi, Mohammad Taghi

    2016-09-01

    Aphanius sophiae (Heckel, 1849) or soffia tooth-carp is endemic species to the endorheic Kor River basin, Fars Province, Southwest of Iran. In spite of importance of this species as a biologic control of anopheles larvae, little attention has been paid to its diseases particularly parasitic infections. A total of 24 A. Sophiae (12 males and 12 females) in Safashahr spring, Kor River basin, were collected by using dip net in February 2012. Surface of all fish were gross examined and screened for any swelling and blisters. All of the examined specimens (100 %) were infected with Ichthyophthirius multifiliis. Infected fish typically developed small blister-like raised lesions on the body surface. The current study presents infection of A. sophiae with I. multifiliis for the first time from Iran. Hence, owing to considerable unexplored area of Iran further studies are required to increase our knowledge about parasitic infections of this fish. PMID:27605832

  17. Morphology, ontogeny, and phylogeny of two brackish urostylid ciliates (Protist, Ciliophora, Hypotricha).

    Science.gov (United States)

    Chen, Xumiao; Miao, Miao; Ma, Honggang; Al-Rasheid, Khaled A S; Xu, Kuidong; Lin, Xiaofeng

    2014-01-01

    The diversity of hypotrichous ciliates has encouraged numerous researchers to use a combination of morphological, morphogenetic, and phylogenetic data to provide a better understanding of the evolutionary relationships within this complex group. In this study, we investigate the morphology and morphogenesis of Pseudourostyla subtropica sp. nov., isolated from mangrove wetland. The new species can be distinguished from its congeners by the huge body size, many more adoral membranelles and marginal cirral rows, and numerous macronuclear nodules. In addition, we provide a morphological characterization of a population of Pseudourostyla nova Wiackowski 1988 from an estuarine habitat. The main events during binary fission of P. subtropica sp. nov. and the Chinese population of P. nova are also revealed to be conservative. The morphological, ontogenetic, and phylogenetic analyses based on the SSU rDNA sequences corroborate the monophyly of Pseudourostyla Borror, 1972, which corresponds well with previous research. The phylogenetic analyses also show that Pseudourostyla and Hemicycliostyla Stokes, 1886, both of which are assigned to the family Pseudourostylidae based on morphological and morphogenetic data, in fact fall into separated clades. The approximately unbiased tests, however, do not reject the possibility that the family Pseudourostylidae is a monophyletic lineage. PMID:25040093

  18. Population dynamics of marine ciliate Euplotes vannus (Protozoa, Ciliophora) in different artificial seawaters

    Institute of Scientific and Technical Information of China (English)

    XU Henglong; ZHU Mingzhuang; JIANG Yong; GAO Shan; MIN Gi-Sik; AL-RASHEID Khaled A.S.

    2011-01-01

    To study population dynamics of marine ciliates in different artificial seawaters (ASW), the population growth dynamics of a common marine ciliate Euplotes vannus were investigated using beef extract media and rice media for five types of ASW and natural seawater (NSW). The results show that: (1) the population growth rate was in the order of NSW>Flack ASW>Nakamula ASW>Schmadz ASW>Oshima ASW>Subow ASW and was considerably higher in rice media than in beef extract media (apart from Subow ASW); (2) the maximum density of E. vannus in stationary phase in each treatment was ranked as Flack ASW>Nakamula ASW>Schmadz ASW>NSW>Oshima ASW>Subow ASW, and was again higher in rice media than in beef extract media (except for Subow ASW); (3) the exponential and stationary phases were longer in rice media than in beef extract media; (4) strains of E. vannus that had been domesticated for >1 year in ASW grew significantly slower, with lower maximum density and longer stationary phase than those isolated and maintained in NSW. It was demonstrated that: (1) E. vannus may grow well in Flack, Nakamula and Schmads ASW compared with NSW (mainly in terms of growth rate); and (2) Oshima ASW is the preferred choice for stock cultures of E. vannus, but the ASWs Flack, Nakamula and Schmadz are preferred for mass culture. These findings suggest that these three ASWs are effective for the cultivation of marine protozoa for experimental studies on ecology, toxicology and molecular biology.

  19. Separation and relationship of ten marine scuticociliates (Protozoa, Ciliophora) using RAPD fingerprinting method

    Institute of Scientific and Technical Information of China (English)

    SHANG Huimin; SONG Weibo

    2005-01-01

    On the basis of the random amplified polymorphic DNA-fingerprinting (RAPD) method, 10 morphospecies of scuticociliates from 7genera, including 15 clones of 13 strains, Uronema rnarinum, Uronema cf marinum, Parauronerna virginianum, P. longurn, Metanophrys similis, M. sinensis, Paralembus digitiformis, Mesanophrys carcini, Paranophrys magna and Cohnilembus verminus were analysed using 8 oligonucleotide primers. The genetic similarity among the clones of the same strain measured by a band-sharing index is 0.97~0.98,while 0.40~0.52 among strains. This value measured is 0.39~0.46 among congeners of the same genus, whereas 0.16~0.47 between different genera. A distance tree was constructed based on 8-primer analysis, in which the scuticociliates investigated were separated into two clusters: one consists of 2 genera, Uronema and Parauronema, and the other was composed of five, Metanophrys, Mesanophrys,Paranophrys, Paralembus and Cohnilembus. It is demonstrated also that the morphospecies Parauronema virginianum may be a species-complex, i. e., it contains different genospecies.

  20. ON THE MARINE CILIATE, Pseudocohnilembus hargisi (PROTOZOA,CILIOPHORA, SCUTICOCILIATIDA) WITH COMPARISON OF ITS RELATED SPECIES

    Institute of Scientific and Technical Information of China (English)

    龚骏; 马宏伟; 宋微波

    2002-01-01

    The living morphology, nuclear apparatus, infraciliature and silverline system o f the poorly-known ciliate Pseudocohnilembus hargisi Evans & Thompson, 1964 , collected from a shrimp culture pond in Qingdao, China, were examined by obser vation of the live specimen; and by the pyridinated carbonate method and Chatton -Lwoff technique. The main characteristics: 13-14 (usually 13) longitudinal or slightly spirally arranged somatic kineties; single contractile vacuole with usually 2 ( 1-2) pores at posterior ends of the fourth and fifth somatic kineties to the rig ht of the buccal cavity. Several related congeners were compared and morphometri cally tabulated.

  1. Phylogeny of subclass Scuticociliatia (Protozoa, Ciliophora) using combined data inferred from genetic, morphological, and morphogenetic evidence

    Science.gov (United States)

    Yi, Zhenzhen; Wang, Yangang; Lin, Xiaofeng; Al-Rasheid, Khaled A. S.; Song, Weibo

    2010-07-01

    Gene sequence-based genealogies of scuticociliates are different from those produced by morphological analyses. For this reason, 11 representative scuticociliates and two ambiguously related genera were chosen to test the ability of combined phylogenetic analyses using both gene sequences and morphological/morphogenetic characteristics. Analyses of both the SSrRNA gene sequences and the combined datasets revealed a consistent branching pattern. While the terminal branches and the order level relationships were generally well resolved, the family level relationships remain unresolved. However, two other trees based on ITS1-5.8S-ITS2 region sequences and morphological/morphogenetic characters showed limited information, due to a lack of informative sites in these two datasets. Our data suggest, however, that the combined analysis of morphological/morphogenetic characters and gene sequences did produce some changes to the phylogenetic estimates of this group.

  2. Molecular phylogenetic lineage of Plagiopogon and Askenasia (Protozoa, Ciliophora) revealed by their gene sequences

    Science.gov (United States)

    Liu, An; Yi, Zhenzhen; Lin, Xiaofeng; Hu, Xiaozhong; Al-Farraj, Saleh A.; Al-Rasheid, Khaled A. S.

    2015-08-01

    Prostomates and haptorians are two basal groups of ciliates with limited morphological characteristics available for taxonomy. Morphologically, the structures used to identify prostomates and haptorians are similar or even identical, which generate heavy taxonomic and phylogenetic confusion. In present work, phylogenetic positions lineage of two rare genera, Plagiopogon and Askenasia, were investigated. Three genes including small subunit ribosomal RNA gene (hereafter SSU rDNA), internal transcribed spacer region (ITS region), and large subunit ribosomal RNA gene (LSU rDNA) were analyzed, 10 new sequences five species each. Our findings included 1) class Prostomatea and order Haptorida are multiphyletic; 2) it may not be appropriate to place order Cyclotrichiida in subclass Haptoria, and the systematic lineage of order Cyclotrichiida needs to be verified further; 3) genus Plagiopogon branches consistently within a clade covering most prostomes and is basal of clade Colepidae, implying its close lineage to Prostomatea; and 4) Askenasia is phylogenetically distant from the subclass Haptoria but close to classes Prostomatea, Plagiopylea and Oligohymenophorea. We supposed that the toxicyst of Askenasia may be close to taxa of prostomes instead of haptorians, and the dorsal brush is a more typical morphological characteristics of haptorians than toxicysts.

  3. New Record of Two Marine Ciliates (Ciliophora: Spirotrichea in South Korea

    Directory of Open Access Journals (Sweden)

    Kang-San Kim

    2013-04-01

    Full Text Available Two marine hypotrichous ciliates, Anteholosticha petzi and Ponturostyla enigmatica, were collected from the Yellow Sea and the Korea Strait, respectively, and described using live observation and protargol-impregnated specimens. Furthermore, the nuclear small subunit ribosomal RNA gene of each was sequenced and compared to previously annotated sequences retrieved from the GenBank. Anteholosticha petzi is characterized by 3 frontal cirri (FC, 2 frontoterminal cirri (FTC, 8-12 transverse cirri (TC, 1 buccal cirrus (BC, 9-12 midventral pairs (MP, 3 bipolar dorsal kineties (DK, and 3 types of colorless cortical granules. Ponturostyla enigmatica is characterized by 8 FC, 5 ventral cirri (VC, 5-7 TC, 6-7 marginal rows (MR on each side, 4 complete and 2-3 partial DK, and greenish cortical granules. This is the first identification and description of these 2 species, A. petzi and P. enigmatica, in South Korea.

  4. Tolerance of ciliated protozoan Paramecium bursaria (Protozoa,Ciliophora) to ammonia and nitrites

    Institute of Scientific and Technical Information of China (English)

    2005-01-01

    The tolerance to ammonia and nitrites in freshwater ciliate Paramecium bursaria was measured in a conventional open system. The ciliate was exposed to different concentrations of ammonia and nitrites for 2h and 12h in order to determine the lethal concentrations. Linear regression analysis revealed that the 2h-LC50 value for ammonia was 95.94 mg/L and for nitrite 27.35 mg/L using probit scale method (with 95% confidence intervals). There was a linear correlation between the mortality probit scale and logarithmic concentration of ammonia which fit by a regression equation y=7.32x-9.51 (R2=0.98; y, mortality probit scale; x, logarithmic concentration of ammonia), by which 2 h-LC50 value for ammonia was fotnd to be 95.50 mg/L. A linear correlation between mortality probit scales and logarithmic concentration of nitrite is also followed the regression equation y=2.86x+0.89 (R2=0.95; y, mortality probit scale; x, logarithmic concentration of nitrite). The regression analysis of toxicity curves showed that the linear correlation between exposed time of ammonia-N LC50 value and ammonia-N LC50 value followed the regression equation y=2862.85e-0.0ax (R2=0.95; y, duration of exposure to LC50 value; x, LC50 value), and that between exposed time of nitrite-N LC50 value and nitrite-N LC50 value followed the regression equation y = 127.15e-0.13x (R2=0.91; y, exposed time of LC50 value; x, LC50 value). The results demonstrate that the tolerance to ammonia in P. bursaria is considerably higher than that of the larvae or juveniles of some metozoa, e.g. cultured prawns and oysters. In addition, ciliates, as bacterial predators, are likely to play a positive role in maintaining and improving water quality in aquatic environments with high-level ammonium, such as sewage treatment systems.

  5. An annotated and revised checklist of pleurostome ciliates (Protista: Ciliophora: Litostomatea) from Slovakia, Central Europe.

    Science.gov (United States)

    Vďačný, Peter; Rajter, L'ubomír

    2014-01-01

    Pleurostomatids are predatory ciliates, living especially in the periphyton and benthos of various freshwater and marine habitats. In the present work, we provide an annotated and revised checklist of this ciliate group from the territory of Slovakia. Altogether 29 pleurostome species belonging to five genera have been reported there: Acineria incurvata, Ac. punctata, Ac. uncinata, Amphileptus claparedii, Am. falcatus, Am. fusiformis, Am. parafusidens, Am. pleurosigma, Am. procerus, Am. punctatus, A. rotundus, Litonotus alpestris, Li. anguilla, Li. carinatus, Li. crystallinus, Li. cygnus, Li. fasciola, Li. fusidens, Li. hirundo, Li. lamella, Li. minisculus, Li. muscorum, Li. obtusus, Li. triqueter, Li. varsaviensis, Loxophyllum helus, Lo. meleagris, Lo. rostratum, and Siroloxophyllum utriculariae. We have catalogued these records providing the following data for each species: (1) author(s) and date of publication; (2) name(s) of the species as appeared in the publication(s) followed by chronologically listed references including relevant page(s) in literature; (3) nomenclatural and taxonomic notes if needed; (4) main morphological characters; (5) morphological data on Slovak populations if available; and (6) all faunistic records. PMID:24870102

  6. Global diversity of aloricate Oligotrichea (Protista, Ciliophora, Spirotricha) in marine and brackish sea water.

    Science.gov (United States)

    Agatha, Sabine

    2011-01-01

    Oligotrichids and choreotrichids are ciliate taxa contributing to the multi-step microbial food web and episodically dominating the marine microzooplankton. The global diversity and distribution of aloricate Oligotrichea are unknown. Here, the geographic ranges of the 141 accepted species and their synonyms in marine and brackish sea water are analyzed, using hundreds of taxonomical and ecological studies; the quality of the records is simultaneously evaluated. The aloricate Oligotrichea match the moderate endemicity model, i.e., the majority (94) of morphospecies has a wide, occasionally cosmopolitan distribution, while 47 morphospecies show biogeographic patterns: they are restricted to single geographic regions and probably include 12 endemic morphospecies. These endemics are found in the Antarctic, North Pacific, and Black Sea, whereas the "flagship" species Strombidinopsis cercionis is confined to the Caribbean Sea. Concerning genera, again several geographic patterns are recognizable. The species richness is distinctly lower in the southern hemisphere than in the northern, ranging from nine morphospecies in the South Pacific to 95 in the North Atlantic; however, this pattern is probably caused by undersampling. Since the loss of species might affect higher trophical levels substantially, the aloricate Oligotrichea should not any longer be ignored in conservation issues. The ecophysiological diversity is considerably larger than the morphological, and even tops the richness of SSrRNA and ITS haplotypes, indicating that probably more than 83-89% of the diversity in aloricate Oligotrichea are unknown. The huge challenge to discover all these species can only be managed by combining the expertises of morphological taxonomists, molecular biologists, ecologists, and physiologists. PMID:21853034

  7. Tintinnina (Ciliophora, Protista) of the North Sea during the spring of 1986

    Science.gov (United States)

    Cordeiro, T. A.; Sassi, R.

    1997-08-01

    This work is the first of a series in which the distribution patterns and the importance of the Tintinnina in the trophic chain of the North Sea are evaluated. In agreement with Foissner (1994), who stated “Most ecological papers on planktonic protozoans lack reliable identifications and modern nomenclature...”, the series will start with the results of a taxonomic revision. Illustrations and brief descriptions of the 23 Tintinnina species found in this analysis are given, as well as comments about species identification. Differences between the present results and the previous work of Lindley (1975) can indicate some changes in the species structure. A higher number of species was found than that found by Lindley (1975) in seasonal samplings. *** DIRECT SUPPORT *** A03B6035 00003

  8. Genealogical analyses of multiple loci of litostomatean ciliates (Protista, Ciliophora, Litostomatea).

    Science.gov (United States)

    Vd'ačný, Peter; Bourland, William A; Orsi, William; Epstein, Slava S; Foissner, Wilhelm

    2012-11-01

    The class Litostomatea is a highly diverse ciliate taxon comprising hundreds of free-living and endocommensal species. However, their traditional morphology-based classification conflicts with 18S rRNA gene phylogenies indicating (1) a deep bifurcation of the Litostomatea into Rhynchostomatia and Haptoria+Trichostomatia, and (2) body polarization and simplification of the oral apparatus as main evolutionary trends in the Litostomatea. To test whether 18S rRNA molecules provide a suitable proxy for litostomatean evolutionary history, we used eighteen new ITS1-5.8S rRNA-ITS2 region sequences from various free-living litostomatean orders. These single- and multiple-locus analyses are in agreement with previous 18S rRNA gene phylogenies, supporting that both 18S rRNA gene and ITS region sequences are effective tools for resolving phylogenetic relationships among the litostomateans. Despite insertions, deletions and mutational saturations in the ITS region, the present study shows that ITS1 and ITS2 molecules can be used to infer phylogenetic relationships not only at species level but also at higher taxonomic ranks when their secondary structure information is utilized to aid alignment. PMID:22789763

  9. Description of Leptopharynx bromelicola n. sp. and characterization of the genus Leptopharynx Mermod, 1914 (Protista, Ciliophora).

    Science.gov (United States)

    Foissner, Wilhelm; Wolf, Klaus W; Yashchenko, Varvara; Stoeck, Thorsten

    2011-01-01

    Using morphological, morphometrical, and molecular methods, we describe Leptopharynx bromelicola n. sp. from tank bromeliads of Jamaica. We add significant data to Leptopharynx costatus and briefly characterize and review the genus Leptopharynx Mermod, 1914, including four new combinations. Nine species can be distinguished when applying the following main features and assuming that most or all have the ability to produce macrostomes (MAs): distinct ridges along the right side ciliary rows; special features like spines or wings on the body and of the oral basket; dikinetids present vs. absent from somatic kinety 3; number of kinetids in kinety 6 as two for the costatus pattern and ≥ five for the bromelicola pattern; beginning and structure of kinety 9 as either underneath or far underneath the adoral membranelles and with or without dikinetids; postoral complex present vs. absent; and preoral kinety 4 continuous vs. discontinuous. The 18S rDNA sequences of L. bromelicola and L. costatus differ by 1.7% and show that Leptopharynx forms a distinct clade within the Nassophorea Small & Lynn, 1981. Leptopharynx bromelicola is possibly closely related to Leptopharynx euglenivora Kahl, 1926, which, however, lacks the basket nose so typical of the former. Leptopharynx forms thin-walled, non-kinetosome-resorbing resting cysts maintaining most of the trophic organelles. PMID:21366759

  10. New stands of species of the Paramecium aurelia complex (Ciliophora, Protista) in Russia (Siberia, Kamchatka).

    Science.gov (United States)

    Przyboś, Ewa; Rautian, Maria; Surmacz, Marta; Bieliavskaya, Alexandra

    2013-01-01

    New stands of P. primaurelia, P. biaurelia, and P. dodecaurelia were found in Russia. P. primaurelia was recorded in Tulun (Siberia, Irkutsk region) and in three stands situated on the Kamchatka peninsula: in Lake Chalaktyrskoye, in the Valley of Geysers, and Petropavlovsk Kamchatski. P. biaurelia was also found in Tulun and in two stands in the vicinity of Lake Baikal and the Buriatia region. P. dodecaurelia was recorded in Cheboksary in European Russia and in other stands situated in Asian Russia: Novosibirsk, the vicinity of Lake Baikal, Buriatia, Kamchatka (Petropavlovsk Kamchatski, Lake Chalaktyrskoye, and Nalychevo). These data extend the ranges of species of the P. aurelia complex in Russia, however, this large territory remains understudied. PMID:23767291

  11. Macronuclear chromatin structure dynamics in Colpoda inflata (Protista, Ciliophora) resting encystment.

    Science.gov (United States)

    Tiano, L; Chessa, M G; Carrara, S; Tagliafierro, G; Delmonte Corrado, M U

    1999-01-01

    The chromatin structure dynamics of the Colpoda inflata macronucleus have been investigated in relation to its functional condition, concerning chromatin body extrusion regulating activity. Samples of 2- and 25-day-old resting cysts derived from a standard culture, and of 1-year-old resting cysts derived from a senescent culture, were examined by means of histogram analysis performed on acquired optical microscopy images. Three groups of histograms were detected in each sample. Histogram classification, clustering and matching were assessed in order to obtain the mean histogram of each group. Comparative analysis of the mean histogram showed a similarity in the grey level range of 25-day- and 1-year-old cysts, unlike the wider grey level range found in 2-day-old cysts. Moreover, the respective mean histograms of the three cyst samples appeared rather similar in shape. All this implies that macronuclear chromatin structural features of 1-year-old cysts are common to both cyst standard cultures. The evaluation of the acquired images and their respective histograms evidenced a dynamic state of the macronuclear chromatin, appearing differently condensed in relation to the chromatin body extrusion regulating activity of the macronucleus. The coexistence of a chromatin-decondensed macronucleus with a pycnotic extrusion body suggests that chromatin unable to decondense, thus inactive, is extruded. This finding, along with the presence of chromatin structural features common to standard and senescent cyst populations, supports the occurrence of 'rejuvenated' cell lines from 1-year-old encysted senescent cells, a phenomenon which could be a result of accomplished macronuclear renewal. PMID:10439214

  12. Occurrence of Chilodonella hexasticha (Ciliophora, Protista on farmed rainbow trout (Oncorhynchus mykiss throughout the season

    Directory of Open Access Journals (Sweden)

    Nikolić Vera P.

    2006-01-01

    Full Text Available An examination of rainbow trout Oncorhynchus mykiss for ectoparasites, on three not so distant fish farms with independent water supply in Eastern Serbia from March to November 1998, resulted in finding three ciliate (Chilodonella hexasticha, Ichthyophthirius multifiliis, Apiosoma piscicola var. minor, one trematode (Gyrodactylus sp. and one mould (Saprolegnia sp. species, making a total of five parasite species. The Chilodonella hexasticha was recorded only on one of the farms, being in the highest extensity in May. This appeared to be the most prominent occurrence in the independent pattern of infestation dynamics of other parasites (Apiosoma, Gyrodactylus, Saprolegnia recorded on that fish farm, as derived by Correspondence Analysis. The Friedman ANOVA test revealed a significant difference in extensity of occurrence of different parasites through the season, due to the significantly greater infestation with Gyrodactilus and significantly lower extensity of infestation with Saprolegnia.

  13. Novel Discovery of Two Heterotrichid Ciliates, Climacostomum virens and Fabrea salina (Ciliophora: Heterotrichea: Heterotrichida in Korea

    Directory of Open Access Journals (Sweden)

    Kim, Ji Hye

    2015-07-01

    Full Text Available Two heterotrichid ciliates, Climacostomum virens (Ehrenberg, 1838 Stein, 1859 from brackish water and freshwater, and Fabrea salina Henneguy, 1890 from a solar saltern, were collected in Korea. They are novelly investigated in Korea by means of live observation, protargol staining and nuclear small subunit (SSU rRNA gene sequencing. Climacostomum virens is characterized by pouch-like body shape, body length of $200-370{\\mu}m$ 수식 이미지 in vivo, conspicuous cytopharyngeal tube, macronuclei ribbon-like shape, and one to four in number, with or without symbiont algae in cytoplasm, 34-66 somatic kineties, 67-113 adoral zone of membranelles, 8-42 peristomial kineties, 24-37 apical membranelles. SSU rDNA sequence size is 1,591 bp and GC contents 48.52%. Fabrea salina is also characterized by scoop-like body shape with proboscis, body length of $190-240{\\mu}m$ 수식 이미지 in vivo, one to two rod-shaped macronuclei, oval micronuclei, grayish green cortical granules, 104-186 somatic kineties, 4-8 preoral kineties, 7-19 peristomial kineties and fragmented paroral membrane. SSU rDNA sequence size is 1,598 bp and GC contents 47.50%.

  14. New records of epibiont Ciliates (Ciliophora) from Indian coast with descriptions of six new species

    Digital Repository Service at National Institute of Oceanography (India)

    Chatterjee, T.; Fernandez-Leborans, G.; Ramteke, D.; Ingole, B.S.

    data about the macronucleus. C. nodosa has the lorica with one or more annular ridges, without data about macronucleus, external stalk slender, two zooids per lorica. C. triangula has an external stalk curved, and all the stalk was striated...

  15. Taxonomic list of ciliated protist (Protozoa: Ciliophora) in Cojimar river, Havana, Cuba

    OpenAIRE

    Isabel de la Caridad Ymas González; Dania Prieto Trueba

    2012-01-01

    The taxonomic composition of ciliated protozoan’s communities from Cojimar river (Havana city) was determinated, over the study period. Samples were collected from six stations located along the river. The samples were cultured in Petri dishes and were main-tained in environmental temperature and natural ilumination. Species identification was made taking into account morphological characters and Levine’s et al.(1980) taxonomic classification was used. It were identified 49 sp...

  16. Taxonomic list of ciliated protist (Protozoa: Ciliophora in Cojimar river, Havana, Cuba

    Directory of Open Access Journals (Sweden)

    Isabel de la Caridad Ymas González

    2012-09-01

    Full Text Available The taxonomic composition of ciliated protozoan’s communities from Cojimar river (Havana city was determinated, over the study period. Samples were collected from six stations located along the river. The samples were cultured in Petri dishes and were main-tained in environmental temperature and natural ilumination. Species identification was made taking into account morphological characters and Levine’s et al.(1980 taxonomic classification was used. It were identified 49 species of ciliated protozoans, which are the first records for the locality. The species are distri-buted in three classes, ten orders, eighteen families and twenty-six genera.

  17. COMMUNITY STRUCTURE OF THE TINTINNIDS (CILIOPHORA: SPIROTRICHEA IN THE REGION OF ABROLHOS (BAHIA, BRAZIL

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    Alejandro Esteweson Santos Faustino da Costa

    2015-03-01

    Full Text Available The tintinnid community in the region of Abrolhos (Bahia, Brazil was studied during February 2012. We hypothesized that the tintinnid community structure varies significantly over a short temporal scale (photoperiod, as well as spatially over a short scale (on and away from the reefs, and a broad scale (distance of the reef area from the coast. Three areas in Abrolhos were studied. Two sampling points were delimited in each area, where the tintinnids were collected by horizontal subsurface plankton net (20 μm mesh-size hauls. Sampling was undertaken every 6 hours, during 24 hours in each area. 24 species were found, all of which are of neritic, cosmopolitan, and of warm-water distribution. The only hypothesis that is not rejected is that related to variability on an extensive spatial scale. There are significant differences between the samples collected in the three areas studied (ANOVA p = 0.017. The clustering of the species highlights a continent-ocean gradient. There is one community typical of the internal arc, composed mainly of neritic agglutinated tintinnids, and another community typical of the external arc, composed mainly of hyaline warm-water and cosmopolitan tintinnids. The factor which exercises the greatest influence on the tintinnid community in the Abrolhos region is the distance from the coast.

  18. COMMUNITY STRUCTURE OF THE TINTINNIDS (CILIOPHORA: SPIROTRICHEA) IN THE REGION OF ABROLHOS (BAHIA, BRAZIL)

    OpenAIRE

    Alejandro Esteweson Santos Faustino da Costa; Sigrid Neumann-Leitão; Fabiano Lopes Thompson; Pedro Augusto Mendes de Castro Melo; Jana Ribeiro de Santana

    2015-01-01

    The tintinnid community in the region of Abrolhos (Bahia, Brazil) was studied during February 2012. We hypothesized that the tintinnid community structure varies significantly over a short temporal scale (photoperiod), as well as spatially over a short scale (on and away from the reefs), and a broad scale (distance of the reef area from the coast). Three areas in Abrolhos were studied. Two sampling points were delimited in each area, where the tintinnids were collected by horizontal subsurfac...

  19. Trichodina heterodentata (Ciliophora) infestation on Prochilodus lineatus larvae: a host-parasite relationship study.

    Science.gov (United States)

    Valladão, Gustavo Moraes Ramos; Gallani, Sílvia Umeda; De Pádua, Santiago Benites; Martins, Maurício Laterça; Pilarski, Fabiana

    2014-04-01

    Prochilodus lineatus is a freshwater fish species found in South America. It is common in aquaculture, but few studies regarding diseases of this fish have been performed. This study presents data of the occurrence of Trichodina heterodentata Duncan, 1977, as well as the pathological alterations detected by light and scanning electron microscopy (SEM). Twenty 20-day-old larvae were harvested from an earth pond and examined. Larvae showed erratic swimming on the pond edges and some had a whitish tegument. Larval smears were either impregnated with silver nitrate or stained with Giemsa stain to observe the taxonomic features of the ciliates. Five larvae were fixed in formalin solution for histopathological analysis, and another five specimens were fixed in glutaraldehyde for SEM. All larvae were diagnosed with a severe infestation by trichodinid T. heterodentata. Histological sections showed discrete hyperplasia of the gill filaments with subepithelial oedema of the secondary lamellae. In the SEM, suction areas were observed on the skin, gill and eye; corrosion and ulceration of the fins were associated with the bacterial presence of cocci on the lesions. This is the first report of T. heterodentata in P. lineatus that is responsible for an acute disease that culminates in larval mortality. PMID:24476792

  20. Phylogenetic study of Class Armophorea (Alveolata, Ciliophora based on 18S-rDNA data

    Directory of Open Access Journals (Sweden)

    Thiago da Silva Paiva

    2013-01-01

    Full Text Available The 18S rDNA phylogeny of Class Armophorea, a group of anaerobic ciliates, is proposed based on an analysis of 44 sequences (out of 195 retrieved from the NCBI/GenBank database. Emphasis was placed on the use of two nucleotide alignment criteria that involved variation in the gap-opening and gap-extension parameters and the use of rRNA secondary structure to orientate multiple-alignment. A sensitivity analysis of 76 data sets was run to assess the effect of variations in indel parameters on tree topologies. Bayesian inference, maximum likelihood and maximum parsimony phylogenetic analyses were used to explore how different analytic frameworks influenced the resulting hypotheses. A sensitivity analysis revealed that the relationships among higher taxa of the Intramacronucleata were dependent upon how indels were determined during multiple-alignment of nucleotides. The phylogenetic analyses rejected the monophyly of the Armophorea most of the time and consistently indicated that the Metopidae and Nyctotheridae were related to the Litostomatea. There was no consensus on the placement of the Caenomorphidae, which could be a sister group of the Metopidae + Nyctorheridae, or could have diverged at the base of the Spirotrichea branch or the Intramacronucleata tree.

  1. INFECÇÃO COM TROFOZOÍTOS DE Ichthyophthirius multifiliis (CILIOPHORA EM Poecilia vivipara (POECILIIDAE COMO HOSPEDEIRO EXPERIMENTAL INFECTION WITH TROPHOZOITES OF Ichthyophthirius multifiliis (CILIOPHORA IN Poecilia vivipara (POECILIIDAE AS AN EXPERIMENTAL HOST

    Directory of Open Access Journals (Sweden)

    Alexander Camaras Berestinas

    2007-04-01

    Full Text Available Este trabalho estudou o grau de parasitismo em Poecilia vivipara infectado experimentalmente com trofozoítos de Ichthyophthirius multifiliis. Em frascos de 400 mL de água com aeração constante foram acondicionados quatro peixes, com duas réplicas e adicionadas as quantidades de 0, 1, 2, 4, 8, 16 e 20 trofozoítos/peixe. Os valores médios da temperatura da água, pH e oxigênio dissolvido foram de 19,5±0,39ºC, 6,35±0,09 e 7,02±0,45mg/L, respectivamente. Antes de se proceder à infecção, os animais foram tratados com solução de formalina 1:4000 durante uma hora por dois dias consecutivos. Obtiveram-se os parasitos de cinco alevinos de Salminus brasiliensis infectados, mantidos em placas de Petri com água por trinta minutos. Coletaram-se os trofozoítos com pipeta Pasteur e adicionou-se o número respectivo em cada tratamento. Para evitar que os parasitos ficassem aderidos às placas, cada uma foi mantida no respectivo frasco durante o período. Após sete dias, os peixes foram sacrificados e examinados, exceto os expostos a 20 trofozoítos/peixe, os quais morreram em dois dias. O valor médio do tratamento com 20 trofozoítos/peixe foi significativamente maior (P<0,05 do que os tratamentos 0, 1, 2, 4, 8 e 16. Indica-se o inóculo entre 1 e 16 trofozoítos/ peixe como viável para o estudo de infecção experimental na espécie estudada, pelo fato de os peixes permanecerem parasitados durante todo o período experimental. PALAVRAS-CHAVE: Ichthyophthirius multifiliis, infecção experimental, Poecilia vivipara This experiment studied the parasitic degree in Poecilia vivipara experimentally infected by Ichthyophthirius multifiliis trophozoites. In flasks with 400 mL of water, four fish were maintained with constant aeration in two replicates and added 0, 1, 2, 4, 8, 16 and 20 trophozoites/fish. Mean values of water temperature, pH and dissolved oxygen were 19.5±0.39ºC, 6.35±0.09 and 7.02±0.45mg/L, respectively. Before experimental infection the fish were treated with formalin solution 1:4000 for 1 hour in two consecutive days. The parasites were obtained from five infected Salminus brasiliensis that were maintained into Petri dishes with water for 30 minutes. Trophozoites were collected with pipette and the respective number of inoculums added. To avoid the parasite adherence, the plates were maintained into the respective flask. After seven days all fish were killed for exam, except for treatment 20 trophozoites/fish in which mortality occurred in two days. The mean value of treatment with 20 trophozoites/fish was significantly higher (P<0.05 than 0, 1, 2, 4, 8 and 16. It is suggested that 1 to 16 trophozoites/fish is practicable to the study of experimental infection, by the fact that these fish were maintained parasitized during whole period. KEY WORDS: Ichthyophthirius multifiliis, experimental infection, Poecilia vivipara.

  2. Feeding behavior of Frontonia leucas (Ehrenberg) (Protozoa, Ciliophora, Hymenostomatida) under different environmental conditions in a lotic system Comportamento alimentar de Frontonia leucas (Ehrenberg) (Protozoa, Ciliophora, Hymenostomatida) sob diferentes condições ambientais em um sistema lótico

    OpenAIRE

    Roberto Júnio P. Dias; Marta D'Agosto

    2006-01-01

    The objective of this study was to record and describe the morphological changes and the ingestion mechanisms of Frontonia leucas (Ehrenberg, 1833) according to the food type and to relate the food ingested with the different environmental conditions in a lotic system, namely São Pedro stream, located in the municipality of Juiz de Fora, Minas Gerais, Brazil. We sampled three points on a monthly basis from August 2002 to June 2003, each of which receiving different levels of untreated sewage....

  3. Trichodina colisae (Ciliophora: Trichodinidae: new parasite records for two freshwater fish species farmed in Brazil Trichodina colisae (Ciliophora: Trichodinidae: novo registro de parasito para duas espécies de peixes de água doce cultivadas no Brasil

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    Gabriela Tomas Jerônimo

    2012-12-01

    Full Text Available Family Trichodinidae comprises ciliate protozoa distributed worldwide; they are considered some of the main parasitological agents infecting cultivated fish. However, the trichodinidae parasitizing important fish species cultured in Brazil are unknown, and more taxonomic studies on this group of parasites are required. This research morphologically characterizes Trichodina colisae Asmat & Sultana, (2005 of pacu (Piaractus mesopotamicus and patinga hybrid (P. mesopotamicus × P. brachypomus cultivated in the central and southeast regions of the country. Fresh assemblies were made from mucus scraped from the skin, fins and gills, fixed with methanol and, subsequently, impregnated with silver nitrate and stained with Giemsa for assessment under light microscopy. This research reports not only the second occurrence of T. colisae in the world, but also its first occurrence in South America.Tricodinídeos são protozoários ciliados móveis com ampla distribuição mundial; são considerados um dos agentes parasitários que mais acometem peixes cultivados. No Brasil, a maioria dos tricodinídeos que parasitam importantes espécies de peixes cultivados são desconhecidos, o que requer mais estudos taxonômicos com esse grupo de parasitos. Este estudo caracteriza morfologicamente Trichodina colisae Asmat & Sultana, 2005 de pacu (Piaractus mesopotamicus e do híbrido patinga (P. mesopotamicus × P. brachypomus cultivados, respectivamente, no Centro-Oeste e Sudeste do Brasil. Foram feitas montagens a fresco do raspado de muco da pele, nadadeiras e brânquias, fixados com metanol e, posteriormente, impregnados com nitrato de prata e coradas com Giemsa para avaliação em microscopia óptica. O presente estudo relata não só a segunda ocorrência de T. colisae no mundo, mas também a primeira ocorrência na América do Sul.

  4. Report of epibiont Thecacineta calix (Ciliophora: Suctorea) on deep sea Desmodora (Nematoda) from the Andaman Sea, Indian Ocean

    Digital Repository Service at National Institute of Oceanography (India)

    Ingole, B.S.; Singh, R.; Sautya, S.; Dovgal, I.; Chatterjee, T.

    biodiversity, sediment sampling was performed in the Andaman Back Arc Basin (Figure 1) during the RV ‘Sonne’ cruise (NIO-RVS-II, 17 October to 1 December 2007). Seabed samples were obtained by deploying a TV camera-guided grab (area: 0.6 m 3 ) which consists.... poccilothrix and Paradesmodora sp. (Schro¨der, 1907; Steiner & Hoeppli, 1926; Schulz, 1931; Steiner, 1931; Allgen, 1949; Matthes, 1956; Susetiono, 2006; Jankowski, 2007). The present report is the first to record T. calix from the Andaman Sea. Thecacineta calix...

  5. Estimation of divergence times in litostomatean ciliates (Ciliophora: Intramacronucleata), using Bayesian relaxed clock and 18S rRNA gene.

    Science.gov (United States)

    Vďačný, Peter

    2015-08-01

    The class Litostomatea comprises a diverse assemblage of free-living and endosymbiotic ciliates. To understand diversification dynamic of litostomateans, divergence times of their main groups were estimated with the Bayesian molecular dating, a technique allowing relaxation of molecular clock and incorporation of flexible calibration points. The class Litostomatea very likely emerged during the Cryogenian around 680 Mya. The origin of the subclass Rhynchostomatia is dated to about 415 Mya, while that of the subclass Haptoria to about 654 Mya. The order Pleurostomatida, emerging about 556 Mya, was recognized as the oldest group within the subclass Haptoria. The order Spathidiida appeared in the Paleozoic about 442 Mya. The three remaining haptorian orders evolved in the Paleozoic/Mesozoic periods: Didiniida about 419 Mya, Lacrymariida about 269 Mya, and Haptorida about 194 Mya. The subclass Trichostomatia originated from a spathidiid ancestor in the Mesozoic about 260 Mya. A further goal of this study was to investigate the impact of various settings on posterior divergence time estimates. The root placement and tree topology as well as the priors of the rate-drift model, birth-death process and nucleotide substitution rate, had no significant effect on calculation of posterior divergence time estimates. However, removal of calibration points could significantly change time estimates at some nodes. PMID:26204556

  6. Quantitative study of Trichodina heterodentata (Ciliophora: Mobilia infrapopulations infesting tadpoles of a Brazilian endemic toad Rhinella pombali (Anura: Bufonidae

    Directory of Open Access Journals (Sweden)

    Noemi M. Fernandes

    2011-12-01

    Full Text Available In this work we investigated the quantitative aspects of the relationship between Rhinella pombali (Baldissera, Caramaschi & Haddad, 2004 tadpoles and their trichodinid ectoparasites. Specimens were collected from a small stream located at an agricultural area between rainforest fragments in southeastern Brazil. A total of 80 tadpoles were investigated. Trichodina heterodentata Duncan, 1977 was the only trichodinid ciliate species recovered. All tadpoles were naturally infested by T. heterodentata with a mean intensity of 695.14 ± 33.33 trichodinid ciliates per tadpole. A positive correlation was observed between the intensity of the infestation and tadpole weight. Intensity of infestation did not significantly influence mean trichodinid diameter in the populations studied. This is the first study investigating density-dependent effects in interspecific interactions between trichodinids and anurans.

  7. Morphology and molecular phylogeny of an Antarctic population of Paraholosticha muscicola (Kahl, 1932) Wenzel, 1953 (Ciliophora, Hypotricha)

    Science.gov (United States)

    Jung, Jae-Ho; Park, Kyung-Min; Min, Gi-Sik; Berger, Helmut; Kim, Sanghee

    2015-12-01

    The morphology of an Antarctic soil population of Paraholosticha muscicola, type species of Paraholosticha, is described from life and after protargol preparation. The data agree rather well with that of relevant descriptions, but the total variability of several features is relatively high in this species. Paraholosticha ovata and P. lichenicola are very likely junior synonyms. In addition, we sequenced the SSU rRNA gene of P. muscicola and thus we can estimate for the first time the phylogenetic position of a member of the Keronopsidae, the sole hypotrichs that divide in cysts. The molecular data basically support the position derived from morphological concepts, that is, P. muscicola branches off outside the Dorsomarginalia because kinety fragmentation and dorsomarginal rows are lacking. However, as in many other molecular analyses, discrepancies with morphology-based hypothesis are present. The misclassification of Paraholosticha and its sister-group Keronopsis in the Keronidae, with Kerona pediculus as type species, is discussed.

  8. Monophyly or polyphyly? Possible conflict between morphological and molecular interpretations of the well-known genus Zoothamnium (Ciliophora, Peritrichia)

    Science.gov (United States)

    Li, Lifang; Ma, Honggang; Al-Rasheid, Khaled A. S.

    2015-03-01

    In this paper, we explore possible conflict between morphological and molecular interpretations of phylogenetic relationships within the well-known peritrichous genus Zoothamnium. On the basis of morphological evidence, for a long time this genus has been believed to be a well-defined monophyletic taxon. Nonetheless, Zoothamnium exhibits higher genetic diversity than the gross morphology of its species. Here, we used all available genetic information for the small subunit of ribosomal RNA (SSU rRNA) and internal transcribed spacer region (ITS1-5.8S-ITS2) for this genus to reconstruct phylogenies for four datasets (SSU rRNA, ITS1, ITS2, and ITS1-5.8S-ITS2) and a combined dataset (SSU rRNA+ITS1-5.8SITS2) using different phylogenetic methods and with consideration of the secondary structure of the genes. Confidence in phylogenetic tree selection was assessed with the approximately unbiased test. The molecular results showed both that Zoothamnium is more likely to be polyphyletic, and morphologically similar genera Zoothamnopsis and Myoschiston were always nested among Zoothamnium species. Accordingly, as with some other groups of ciliates, to understand more fully the correct phylogeny of Zoothamnium there remains a need for additional data from both morphological and molecular studies, covering additional Zoothamnium spp. and members of closely related genera (e.g. Zoothamnopsis, Myoschiston, and Epistylis).

  9. Molecular phylogeny and species delimitation within the ciliate genus Spirostomum (Ciliophora, Postciliodesmatophora, Heterotrichea), using the internal transcribed spacer region.

    Science.gov (United States)

    Shazib, Shahed Uddin Ahmed; Vďačný, Peter; Kim, Ji Hye; Jang, Seok Won; Shin, Mann Kyoon

    2016-09-01

    Morphological and molecular delimitation of Spirostomum species is currently under debate. We addressed species boundaries within the genus Spirostomum, using the ITS1-5.8S-ITS2 region and the secondary structure of the ITS2 molecule, and 18S and 28S (D1D2) sequences additionally. The Spirostomum ITS region is among the shortest within the ciliates hitherto studied. The Spirostomum ITS2 molecule matches the "ring model", but exhibits only two helices radiating from a common loop. According to comparative analyses, they very likely correspond to helices II and III of other eukaryotes. Our phylogenetic analyses of the ITS region revealed a complex genealogical structure within the genus Spirostomum. However, boundaries among Spirostomum species could not be unambiguously determined either by phylogenetic trees, networks or sequence divergence cutoffs, because ITS2 sequences transcended species boundaries of the following morphospecies: S. ambiguum, S. minus, S. subtilis and S. teres. According to molecular diversity analysis, this is very likely caused by polymorphism in S. minus and S. teres, and by the lack of variability in S. ambiguum and S. subtilis. No compensatory base changes (CBCs) were detected in helices of the ITS2 molecule between different Spirostomum species, documenting that CBC analysis per se is not able to effectively discriminate Spirostomum species. PMID:27261253

  10. Reconciling classical and molecular phylogenies in the stichotrichines (Ciliophora, Spirotrichea), including new sequences from some rare species

    NARCIS (Netherlands)

    Foissner, W.; Moon-van der Staay, S.Y.; Staay, G.W.M. van der; Hackstein, J.H.P.; Krautgartner, W.D.; Berger, H.

    2004-01-01

    We performed a comparative morphological and molecular study on oxytrichid and urostylid stichotrichs (= part of the former hypotrichs). Included are new small subunit (18S) ribosomal RNA (rRNA) gene sequences from five rare oxytrichids (Gonostomum namibiense, Cyrtohymena citrina, Hemiurosoma terric

  11. Complementary Notes on a‘Well-known' Marine Heterotrichous Ciliate, Folliculinopsis producta (Wright, 1859) Fraure-Fremiet,1936 (Protozoa, Ciliophora)

    Institute of Scientific and Technical Information of China (English)

    JI Daode; LIN Xiaofeng; SONG Weibo

    2004-01-01

    The living morphology and infraciliature of a heterotrichous ciliate, Folliculinopsis producta (Wright, 1859)Fraure-Fremiet, 1936, which was collected from the north coast of China, were investigated by in vivo observation and protargol impregnation techniques. As a new contribution, a redescription is presented: large Folliculinopsis of green to dark green in color, 800-1500μm in size; two peristomial lobes of approximately equal size, 300-400μm in length; adoral zone of membranelles containing about 1000 membranelles, lying along lobe margins and exhibiting two circles within buccal cavity;50-70 somatic kineties in mid-body; macronucleus miniliform, consisting of about 20 beads; lorica smooth, vase-shaped,(300 500)μm ×(90-130)μm in size, with 5-12 spiral ridges on neck tube; marine habitat.

  12. Insights into the phylogeny of sporadotrichid ciliates (Protozoa, Ciliophora: Hypotricha) based on genealogical analyses of multiple molecular markers

    Science.gov (United States)

    Hu, Xiaoyan; Hu, Xiaozhong; Al-Rasheid, Khaled A. S.; Al-Farraj, Saleh A.; Song, Weibo

    2011-01-01

    The sporadotrichid ciliates are an especially diverse group. A number of investigators have studied the morphological, morphogenetic, and molecular relationships among members of this group. Despite this, a consistent classification is still lacking and several important questions about the phylogenetic relationships within this group remain unsolved. To improve our understanding of these relationships, we constructed phylogenetic trees using the nucleotide sequences of the small-subunit rRNA (SSrRNA) gene and amino acid sequences of actin I and α-tubulin. Analyses of SSrRNA gene sequences indicated that: 1) the Sporadotrichida sensu Lynn (2008) and the Oxytrichidae are polyphyletic; 2) the Uroleptus species, which are classified to urostylids, formed a sister group with the oxytrichids; 3) Halteria grandinella, which is grouped morphologically with oligotrich species, clustered within the oxytrichids. These results are congruent with previous studies based on SSrRNA gene sequences. However, the amino acid sequences of actin I and α-tubulin yielded different topologies. The main results are: 1) in all phylogenetic trees, the genus Oxytricha was paraphyletic; 2) Uroleptus was sister to a subset of Urostyla and Holosticha, albeit with low supporting values; 3) Halteria grandinella was separated distantly from the Oxytrichidae in trees inferred from actin I amino acid sequences but clustered with oligotrichids in the α-tubulin analysis. The inconsistency among the trees inferred from these different molecular markers may be caused by rapidly accumulated genetic characterizations of ciliates. Further studies with additional molecular markers and sampling of more taxa are expected to better address the relationships among sporadotrichids.

  13. ON THE MARINE CILIATE, Pseudocohnilembus hargisi (PROTOZOA, CILIOPHORA, SCUTICOCILIATIDA) WITH COMPARISON OF ITS RELATED SPECIES

    Institute of Scientific and Technical Information of China (English)

    龚骏; 马宏伟; 宋微波

    2002-01-01

    The living morphology, nuclear apparatus, infraciliature and silverline system of the poorly-known ciliate Pseudocohnilembus hargisi Evans & Thompson, 1964, collected from a shrimp culture pond in Qingdao, China, were examined by observation of the live specimen ; and by the pyridinated carbonate method and Chatton-Lwoff technique. The main characteristics: 13 - 14 (usually 13) longitudinal or slightly spirally arranged somatic kineties; single contractile vacuole with usually 2 ( 1 - 2) pores at posterior ends of the fourth and fifth somatic kineties to the fight of the buccal cavity. Several related congeners were compared and morphometrically tabulated.

  14. Molecular phylogeny of oligotrich genera Omegastrombidium and Novistrombidium (Protozoa, Ciliophora) for the systematical relationships within Family Strombidiidae

    Science.gov (United States)

    Zhang, Qianqian; Yi, Zhenzhen; Xu, Dapeng; Al-Rasheid, Khaled A. S.; Gong, Jun; Song, Weibo

    2010-07-01

    The phylogeny of the oligotrich ciliates is currently a hot debate despite the availability of both morphological and molecular data. In the present paper, further small subunit rRNA (SS rRNA) genes were analyzed from the Genera Omegastrombidium and Novistrombidium, as well as from Strombidium, and combined with three new SS rRNA sequences from Strombidium basimorphum, S. sulcatum population QD-1, and Novistrombidium testaceum population GD. The phylogenetic positions of these organisms were inferred using Bayesian inference, Maximum Likelihood, and Maximum Parsimony methods. The main results are: (1) the SS rRNA gene sequence analyses match the recent findings about the molecular evolution of oligotrichs, indicating that the family Strombidiidae is paraphyletic; (2) the Genus Omegastrombidium is separated from the Genus Strombidium, as shown in recent cladistic analyses; (3) morphospecies in Genus Novistrombidium, based on similarity of somatic ciliature, are separated from each other in all topological trees, indicating that this genus could be a paraphyletic group; (4) the molecular data indicate a possibility of paraphyly for the genus Strombidium; and (5) the similarities of the SS rRNA gene of specimens identified as S. sulcatum and S. inclinatum are 99.8%-100%. However, present knowledge on the oligotrichs sensu stricto is still insufficient and further studies based on both molecular and other technologies are required.

  15. Notes on Two Marine Ciliates from the Yellow Sea, China: Placus salinus and Strombidium apolatum (Protozoa, Ciliophora)

    Institute of Scientific and Technical Information of China (English)

    XU Dapeng; SONG Weibo; HU Xiaozhong

    2005-01-01

    The living morphology and infraciliature of two rare marine ciliates, Placus salinus Dietz, 1964 and Strombidium apolatum Wilbert and Song, 2005, collected from the coastal waters near Qingdao, China, were investigated by in vivo observation and protargol impregnation technique. The improved diagnosis for Placus salinus is as follows: medium-sized marine Placus, in vivo (50 -60) μm × (30 -40)μm; cell elliptical to barrel-shaped; 28 -31 somatic kineties; single macronucleus usually ellipsoid and one micronucleus located in the indention of the macronucleus; one contractile vacuole posteriorly positioned. Strombidium apolatum is characterized by: marine strombidium (40-60) μm × (30-45) μm in vivo, cordiform in shape with somewhat pointed posterior end and conspicuous apical protrusion; extrusomes prominent, about 15μm in length and evenly arranged along the circle kinety; about 16 collar and 5-6 buccal membranelles; one elongate macronucleus and one micronucleus; circle and ventral kineties consisting of about 53 and 45 dikinetids respectively.

  16. Reevaluation of cortical developmental patterns in Euplotes (s. l.), including a morphogenetic redescription of E. charon (Protozoa, Ciliophora, Euplotida)

    Science.gov (United States)

    Shao, Chen; Ma, Honggang; Gao, Shan; Khaled, Al-Rasheid A.; Song, Weibo

    2010-05-01

    We documented the pattern of cell development in Euplotes charon. The ontogenesis of this species was similar to many of its congeners, except for the formation of the caudal cirri. In E. Charon, a caudal cirrus is formed posterior to each of the rightmost two or three dorsal kinety anlage in the proter, and the second rightmost dorsal kinety in the opisthe. In addition, two caudal cirri are formed posterior to the rightmost dorsal kinety in the opisthe. This pattern of development represents a completely new type. Based on our evaluation, and in comparison with previous studies, we also conclude that the pattern of cell development is variable among species in the Euplotes genera. The variation is particularly evident during the formation of frontoventral and caudal cirri. Based on the segmentation pattern of frontal-midventral transverse cirral anlagen, cirri reduction, and migration of frontoventral cirri, we identified five types: the affinis-type, the eurystomus-type, the charon-type, the raikovi-type and orientalis-type. Euplotes (s. l.) can also be divided into three types based on the formation of caudal cirri: focardii-type, vannus-type and charon-type. Indeed, we conclude that the number (one or two) of marginal cirri should be given as much consideration as the genetic separation. Given this, we reassessed the validity of using genetic separation to classify the group. Generally, the morphogenetic data disagreed with the molecular data (SSrRNA gene sequences). Given these discrepancies, it is too early to draw conclusions on the systematic arrangement of this species-rich taxon.

  17. New records of Thecacineta cothurnioides and Trematosoma rotunda (Ciliophora, Suctorea) as epibionts on nematodes from the Indian Ocean

    Digital Repository Service at National Institute of Oceanography (India)

    Dovgal, I.; Chatterjee, T.; Ingole, B.S.

    , indicated here) from Banyuls- sur-Mer at Mediterranean coast of France (type locality, indicated here) (Fig. 1). Th. cothurnioides was also listed for river Seversky Donets basin in Ukraine (Dovgal, 1988). However, the species is not characteristic...

  18. Two New Genera of Planktonic Ciliates and Insights into the Evolution of the Family Strombidiidae (Protista, Ciliophora, Oligotrichia.

    Directory of Open Access Journals (Sweden)

    Weiwei Liu

    Full Text Available Oligotrich ciliates are common marine microplankters, but their biodiversity and evolutionary relationships have not been well-documented. Morphological descriptions and small subunit rRNA gene sequences of two new species representing two new strombidiid genera, Sinistrostrombidium cupiformum gen. nov., sp. nov. and Antestrombidium agathae gen. nov., sp. nov. are presented, and their taxonomy and molecular phylogeny are analyzed. Sinistrostrombidium gen. nov. is characterized by a sinistrally spiraled girdle kinety and a longitudinal ventral kinety. Antestrombidium gen. nov. is distinguished by tripartite somatic kineties (circular and ventral kineties plus dextrally spiraled girdle kinety. Sinistrostrombidium and Antestrombidium branched separately from one another in phylogenetic trees, clustering with different clades of strombidiids. The new genera added to the diversities of ciliary patterns and small subunit rRNA gene sequences in strombidiids leads to presentation of a new hypothesis about evolution of the 12 known strombidiid genera, based on ciliary pattern and partly supported by molecular evidence. In addition, our new morphological and molecular analyses support establishment of a new order Lynnellida ord. nov., characterized by an open adoral zone of membranelles without differentiation of anterior and ventral membranelles, for Lynnella, but we remain unable to assign the genus to a subclass with confidence.

  19. Checklist and distribution of ciliates from the family Euplotidae Ehrenberg, 1838 (Protista: Ciliophora: Spirotrichea) in Slovakia, Central Europe.

    Science.gov (United States)

    Tirjaková, Eva; Botlíková, Simona; Vďačný, Peter

    2015-01-01

    A checklist of ciliates from the family Euplotidae recorded in the territory of Slovakia, Central Europe was assembled. Altogether, 11 species belonging to three genera of the family Euplotidae have been reported there: Euplotes alatus, Euplotes charon, Euplotes moebiusi, Euplotoides aediculatus, Euplotoides eurystomus, Euplotoides patella, Euplotoides woodruffi, Euplotopsis affinis, Euplotopsis finki, Euplotopsis muscicola, and Euplotopsis novemcarinata. However, records of the marine species E. alatus and E. charon are doubtful and very likely represent misidentifications of E. moebiusi. Since the euryhaline species E. woodruffi was found for the first time in Slovakia, its morphology is described. Based on the literature data and our own observations, the present checklist is also accompanied with distribution data on the 11 aforementioned species. As concerns ecology, Slovak euplotids typically occurred in freshwater bodies having higher trophic levels. Only two species, E. finki and E. muscicola, were isolated from terrestrial habitats, especially, from mosses, leaf-litter, and decaying wood mass. PMID:25781253

  20. A molecular phylogenetic investigation of bakuella, anteholosticha, and caudiholosticha (protista, ciliophora, hypotrichia) based on three-gene sequences.

    Science.gov (United States)

    Lv, Zhao; Shao, Chen; Yi, Zhenzhen; Warren, Alan

    2015-01-01

    Traditionally classifications of the Urostyloida have been mainly based on morphology and morphogenesis. Recent molecular phylogenetic analyses have been largely based on single-gene data for a limited number of taxa. Consequently, incongruence has arisen between the morphological/morphogenetic and the molecular data. In this study, the three phylogenetic markers (SSU rDNA, ITS1-5.8S-ITS2 region, and LSU-rDNA) of three urostyloid genera represented by four species (Bakuella granulifera, Anteholosticha monilata, Caudiholosticha sylvatica, and C. tetracirra) were sequenced to investigate their phylogeny. The results show that: (1) all three genera should be regarded as the members of the order Urostyloida within the subclass Hypotrichia, as indicated by morphological characters; (2) phylogenetic analyses and sequence similarities both indicate that neither Anteholosticha nor Caudiholosticha are monophyletic and the systematic assignment of both genera awaits further evaluation; and (3) Bakuella has a closer relationship with Urostyla than with bakuellids (e.g. Apobakuella and Metaurostylopsis), suggesting Bakuella may belong to the family Urostylidae rather than the family Bakuellidae. PMID:25399810

  1. Three-gene based phylogeny of the Urostyloidea (Protista, Ciliophora, Hypotricha), with notes on classification of some core taxa☆

    Science.gov (United States)

    Huang, Jie; Chen, Zigui; Song, Weibo; Berger, Helmut

    2014-01-01

    Classifications of the Urostyloidea were mainly based on morphology and morphogenesis. Since molecular phylogeny largely focused on limited sampling using mostly the one-gene information, the incongruence between morphological data and gene sequences have risen. In this work, the three-gene data (SSU-rDNA, ITS1-5.8S-ITS2 and LSU-rDNA) comprising 12 genera in the “core urostyloids” are sequenced, and the phylogenies based on these different markers are compared using maximum-likelihood and Bayesian algorithms and tested by unconstrained and constrained analyses. The molecular phylogeny supports the following conclusions: (1) the monophyly of the core group of Urostyloidea is well supported while the whole Urostyloidea is not monophyletic; (2) Thigmokeronopsis and Apokeronopsis are clearly separated from the pseudokeronopsids in analyses of all three gene markers, supporting their exclusion from the Pseudokeronopsidae and the inclusion in the Urostylidae; (3) Diaxonella and Apobakuella should be assigned to the Urostylidae; (4) Bergeriella, Monocoronella and Neourostylopsis flavicana share a most recent common ancestor; (5) all molecular trees support the transfer of Metaurostylopsis flavicana to the recently proposed genus Neourostylopsis; (6) all molecular phylogenies fail to separate the morphologically well-defined genera Uroleptopsis and Pseudokeronopsis; and (7) Arcuseries gen. nov. containing three distinctly deviating Anteholosticha species is established. PMID:24140978

  2. Description and phylogeny of a new prostomatid, Metacystis similis nov. spec. (Protista, Ciliophora) from the East China Sea.

    Science.gov (United States)

    Zhang, Xiumei; Ji, Daode; Zhang, Qianqian; Li, Chenghua

    2015-01-01

    The living morphology and infraciliature of a new marine prostomatid, Metacystis similis nov. spec., have been observed and investigated. Based on both morphological and molecular biological data, several closely-related and easily confused taxa were compared. The diagnosis for this new taxon: cylindrical marine Metacystis with a slightly blunt anterior end, in vivo 50-70 x 18-23 μm; body not loricate, uniformly cinctured by 16-18 transverse rings of cilia, which are also arranged in 32-36 longitudinal kineties; oral apparatus consisting of one circumoral dikinety and six girdles of densely packed monokinetids; single spherical macronucleus located in the center of the body; caudal region possessing one transparent, protruding hemicycle terminal vacuole. Information concerning the small-subunit rRNA gene sequence of the new species was also provided. PMID:26624426

  3. Associative behaviour and antagonism of bovine rumen ciliate (Protista, Ciliophora from Zona da Mata, Minas Gerais State, Brazil

    Directory of Open Access Journals (Sweden)

    Marta D'Agosto

    2001-12-01

    Full Text Available Aiming at obtaining the community profile and verifying the occurrence of antagonism and association among ciliates, samples of rumen content were analysed in 100 bovines soon after their death. The animals were killed at the Juiz de Fora Municipal slaughter house (Juiz de Fora, Minas Gerais State, Brazil between August 1996 and May 1997. Ciliates occurred, respectively, in the following percents and samples number: Entodinium Stein, 1859 (50,48; 100, Diplodinium Schuberg, 1888 (5,59; 98, Eudiplodinium Dogiel, 1927 (6,91; 97, Ostracodinium Dogiel, 1927 (9,68; 95, hotricha Stein, 1859 (4,15; 93, Dasytricha Schuberg, 1888 (3,31; 93, Metadi nium Awerinzew & Mutafowa, 1914 (3,06; 90, Eremoplastron Kofoid & MacLennan. 1932 (7,39; 87, Epidinium Crawley, 1923 (5,31; 73, Charonina Strand, 1928 (1,33; 65, Eodinium Kofoid & MacLennan, 1932 (1,49; 59, Diploplastron Kofoid & MacLennan, 1932 (0,88; 24, Elytroplastron Kofoid & MacLennan, 1932 (0,36; 16, Polyplastron Dogiel, 1927 (0,04; 03 and Buetschlia Schuberg, 1888 (0,02; 01. When the antagonistic behaviour and the association were analyzed, it was observed that Eudiplodinium was detected in the absence of Polyplastron and in the presence of Epidinium in 94% and 73% of the samples, respectively. These data confirm the antagonism and the coexistence among particular populations of rumen ciliates and allowed the identification of 94% of the samples examined as being of profile type B, none of type A and 3% of mixed A-B community and of type O. It is suggested the use of the term community profile instead of population profile, as the respective types involve associations of various ciliate populations.

  4. Three-gene based phylogeny of the Urostyloidea (Protista, Ciliophora, Hypotricha), with notes on classification of some core taxa.

    Science.gov (United States)

    Huang, Jie; Chen, Zigui; Song, Weibo; Berger, Helmut

    2014-01-01

    Classifications of the Urostyloidea were mainly based on morphology and morphogenesis. Since molecular phylogeny largely focused on limited sampling using mostly the one-gene information, the incongruence between morphological data and gene sequences have risen. In this work, the three-gene data (SSU-rDNA, ITS1-5.8S-ITS2 and LSU-rDNA) comprising 12 genera in the "core urostyloids" are sequenced, and the phylogenies based on these different markers are compared using maximum-likelihood and Bayesian algorithms and tested by unconstrained and constrained analyses. The molecular phylogeny supports the following conclusions: (1) the monophyly of the core group of Urostyloidea is well supported while the whole Urostyloidea is not monophyletic; (2) Thigmokeronopsis and Apokeronopsis are clearly separated from the pseudokeronopsids in analyses of all three gene markers, supporting their exclusion from the Pseudokeronopsidae and the inclusion in the Urostylidae; (3) Diaxonella and Apobakuella should be assigned to the Urostylidae; (4) Bergeriella, Monocoronella and Neourostylopsis flavicana share a most recent common ancestor; (5) all molecular trees support the transfer of Metaurostylopsis flavicana to the recently proposed genus Neourostylopsis; (6) all molecular phylogenies fail to separate the morphologically well-defined genera Uroleptopsis and Pseudokeronopsis; and (7) Arcuseries gen. nov. containing three distinctly deviating Anteholosticha species is established. PMID:24140978

  5. [The route of a bacterium Holospora in the cell of Paramecium (Ciliophora, Protista) from phagosome to the nucleus].

    Science.gov (United States)

    Sabaneeva, E V; Fokin, S I; Kornilova, E S

    2002-01-01

    Problems encountered at the initial stages of stable symbiotic system formation are discussed in the review. The most studied models for interaction between pathogenic bacteria and metazoan cells are compared with a similar system including Paramecium (a ciliatte)--Holospora (a bacterium). Literary and our own data on the infection of P. caudatum with specific endocytobionts inhabiting the nuclear apparatus (H. obtusa in the macronucleus), and H. undulata (in the micronucleus) are analysed with respect to the modern understanding of the intracellular vesicle trafficking. PMID:12561729

  6. Genome structure drives patterns of gene family evolution in ciliates, a case study using Chilodonella uncinata (Protista, Ciliophora, Phyllopharyngea).

    Science.gov (United States)

    Gao, Feng; Song, Weibo; Katz, Laura A

    2014-08-01

    In most lineages, diversity among gene family members results from gene duplication followed by sequence divergence. Because of the genome rearrangements during the development of somatic nuclei, gene family evolution in ciliates involves more complex processes. Previous work on the ciliate Chilodonella uncinata revealed that macronuclear β-tubulin gene family members are generated by alternative processing, in which germline regions are alternatively used in multiple macronuclear chromosomes. To further study genome evolution in this ciliate, we analyzed its transcriptome and found that (1) alternative processing is extensive among gene families; and (2) such gene families are likely to be C. uncinata specific. We characterized additional macronuclear and micronuclear copies of one candidate alternatively processed gene family-a protein kinase domain containing protein (PKc)-from two C. uncinata strains. Analysis of the PKc sequences reveals that (1) multiple PKc gene family members in the macronucleus share some identical regions flanked by divergent regions; and (2) the shared identical regions are processed from a single micronuclear chromosome. We discuss analogous processes in lineages across the eukaryotic tree of life to provide further insights on the impact of genome structure on gene family evolution in eukaryotes. PMID:24749903

  7. Phylogenetic analyses of cyclidiids (Protista, Ciliophora, Scuticociliatia) based on multiple genes suggest their close relationship with thigmotrichids.

    Science.gov (United States)

    Gao, Feng; Gao, Shan; Wang, Pu; Katz, Laura A; Song, Weibo

    2014-06-01

    Cyclidiids and thigmotrichids are two diverse groups of scuticociliates, a diverse clade of ciliates that is often difficult to investigate due to the small size and conserved morphology among its members. Compared to other groups (e.g. hypotrichs and oligotrichs), the scuticociliates have received relatively little attention and their phylogenetic relationships are largely unresolved. To contribute to our understanding of their evolutionary history, we characterized 26 sequences for three linked genes (SSU-rDNA, 5.8S and LSU-rDNA) from 14 isolates of cyclidiids and thigmotrichids. Phylogenetic analyses reveal the following: (1) traditional cyclidiids are associated with thigmotrichs rather than pleuronematids as expected; (2) the validity of the newly-reported genus Falcicyclidium is confirmed by the molecular data and we suggest to transfer this genus to the family Ctedoctematidae; (3) both the genera Cyclidium and Protocyclidium are not monophyletic and the separation of Protocyclidium from Cyclidium is not supported; (4) the genus Cristigera is a well supported monophyletic group and may stand for a new family; (5) according to both morphological and molecular information, Cyclidium plouneouriDragesco, 1963 should be assigned in the genus Falcicyclidium and thus a new combination is suggested: Falcicyclidium plouneouri (Dragesco, 1963) n. comb.; and (6) based on the data available, a new genus is suggested: Acucyclidium gen. nov. with the type species, Acucyclidium atractodes (Fan et al., 2011a) n. comb. PMID:24530638

  8. Evidence for the presence of a mammalian-like cholinesterase in Paramecium primaurelia (Protista, Ciliophora) developmental cycle.

    Science.gov (United States)

    Delmonte Corrado, M U; Politi, H; Trielli, F; Angelini, C; Falugi, C

    1999-01-01

    By histochemical and immunohistochemical methods, the presence of cholinergic-like molecules has previously been demonstrated in Paramecium primaurelia, and their functional role in mating-cell pairing was suggested. In this work, both true acetylcholinesterase (AChE) and butyrylcholinesterase (BuChE) activities were electrophoretically investigated, and the presence of molecules immunologically related to BuChE was checked by immunoblotting. The AChE activity, shown in the membrane protein fraction of mating-competent cells and in the cytoplasmic fraction of immature cells, is due to a 260-kDa molecular form, similar to the membrane-bound tetrameric form present in human erythrocytes. This AChE activity does not appear in either the cytoplasmic fraction of mating-competent cells or in the membrane protein fraction of immature cells. No evidence was found for the presence or the activity of BuChE-like molecules. The role of AChE in P. primaurelia developmental cycle is discussed. PMID:9990739

  9. Two New Genera of Planktonic Ciliates and Insights into the Evolution of the Family Strombidiidae (Protista, Ciliophora, Oligotrichia).

    Science.gov (United States)

    Liu, Weiwei; Yi, Zhenzhen; Xu, Dapeng; Clamp, John C; Li, Jiqiu; Lin, Xiaofeng; Song, Weibo

    2015-01-01

    Oligotrich ciliates are common marine microplankters, but their biodiversity and evolutionary relationships have not been well-documented. Morphological descriptions and small subunit rRNA gene sequences of two new species representing two new strombidiid genera, Sinistrostrombidium cupiformum gen. nov., sp. nov. and Antestrombidium agathae gen. nov., sp. nov. are presented, and their taxonomy and molecular phylogeny are analyzed. Sinistrostrombidium gen. nov. is characterized by a sinistrally spiraled girdle kinety and a longitudinal ventral kinety. Antestrombidium gen. nov. is distinguished by tripartite somatic kineties (circular and ventral kineties plus dextrally spiraled girdle kinety). Sinistrostrombidium and Antestrombidium branched separately from one another in phylogenetic trees, clustering with different clades of strombidiids. The new genera added to the diversities of ciliary patterns and small subunit rRNA gene sequences in strombidiids leads to presentation of a new hypothesis about evolution of the 12 known strombidiid genera, based on ciliary pattern and partly supported by molecular evidence. In addition, our new morphological and molecular analyses support establishment of a new order Lynnellida ord. nov., characterized by an open adoral zone of membranelles without differentiation of anterior and ventral membranelles, for Lynnella, but we remain unable to assign the genus to a subclass with confidence. PMID:26121340

  10. Phylogenetic relationships of the ciliate class Heterotrichea (Protista, Ciliophora, Postciliodesmatophora) inferred from multiple molecular markers and multifaceted analysis strategy.

    Science.gov (United States)

    Shazib, Shahed Uddin Ahmed; Vd'ačný, Peter; Kim, Ji Hye; Jang, Seok Won; Shin, Mann Kyoon

    2014-09-01

    The ciliate class Heterotrichea is defined by somatic dikinetids bearing postciliodesmata, by an oral apparatus consisting of a paroral membrane and an adoral zone of membranelles, as well as by features of nuclear division involving extramacronuclear microtubules. Although phylogenetic interrelationships among heterotrichs have been analyzed several times, deeper nodes of the heterotrichean tree of life remain poorly resolved. To cast more light on the evolutionary history of heterotricheans, we performed phylogenetic analyses of multiple loci (18S rRNA gene, ITS1-5.8S rRNA-ITS2 region, and 28S rRNA gene) using traditional tree-building phylogenetic methods and statistical tree topology tests as well as phylogenetic networks, split spectrum analysis and quartet likelihood mapping. This multifaceted approach has shown that (1) Peritromus is very likely an adelphotaxon of all other heterotrichs; (2) Spirostomum and Anigsteinia are sister taxa and their common monophyletic origin is strongly supported by a uniquely posteriorly-thickened paroral membrane; (3) the monotypic family Chattonidiidae should be suppressed because its type genus clusters within the family Condylostomatidae; and (4) new families are needed for Gruberia and Fabrea because their affiliation with Spirostomidae and Climacostomidae, respectively, is not supported by molecular phylogenies nor the fine structure of the paroral membrane. PMID:24859684

  11. Morphology and systematics of two freshwater urostylid ciliates, with description of a new species (Protista, Ciliophora, Hypotrichia).

    Science.gov (United States)

    Pan, Xuming; Fan, Yangbo; Gao, Feng; Qiu, Zijian; Al-Farraj, Saleh A; Warren, Alan; Shao, Chen

    2016-02-01

    The morphology of two freshwater urostylid species, Neourostylopsis flava spec. nov. and Pseudourostyla subtropicaChen et al., 2014, isolated from freshwater ponds in northern and southern China, respectively, was investigated following examination of specimens in vivo and following protargol staining. Neourostylopsis flava spec. nov. is distinguished from its congeners by the following characteristics: body size 150-220 × 50-75 μm in vivo; yellow in colour; bright yellow to yellow-brownish spherical cortical granules densely arranged along marginal cirral rows and in irregular short rows on dorsal side; adoral zone with 40-55 membranelles; six to eight frontal, three or four buccal, two pretransverse ventral and seven to nine transverse cirri; 27-40 midventral pairs extending to about anterior 55% of cell; four or five left and four right marginal rows; freshwater habitat. A redescription of a freshwater population of P. subtropica is also provided. Phylogenetic analyses based on small subunit ribosomal DNA sequences shows that P. subtropica and N. flava spec. nov. group with their congeners and both Neourostylopsis and Pseudourostyla are monophyletic. PMID:26752607

  12. Two new marine scuticociliates, Sathrophilus planus n. sp. and Pseudoplatynematum dengi n. sp., with improved definition of Pseudoplatynematum (Ciliophora, Oligohymenophora).

    Science.gov (United States)

    Fan, Xinpeng; Chen, Xiangrui; Song, Weibo; Al-Rasheid, Khaled A S; Warren, Alan

    2010-08-01

    Two new marine scuticociliates, Sathrophilus planus n. sp. and Pseudoplatynematum dengi n. sp., isolated from coastal waters of Qingdao, northern China, were investigated using live observation and silver impregnations. Sathrophilus planus can be recognized by its elongate and conspicuously flattened body, ca. 16 somatic kineties, single postoral kinety, extremely elongated first kinety row of membranelle 1, and its marine habitat. Among these features, the structure of membranelle 1 is the most characteristic and enables this species to be easily distinguished from its congeners. Pseudoplatynematum dengi is characterized by the following features: cell surface conspicuously strengthened and notched; prominent spines both at anterior and posterior ends of cell; membranelles 1 and 2 three-rowed, membranelle 3 single-rowed; paroral membrane composed of two parts, anterior end of upper part extending to about level of membranelle 2; ca. 20 somatic kineties, one postoral kinety; single prolonged caudal cilium; contractile vacuole caudally positioned. The diagnosis of the genus Pseudoplatynematum was renewed to include some new characteristics revealed by silver impregnation methods. PMID:20430600

  13. Morphology, Cell Division, and Phylogeny of Uroleptus longicaudatus (Ciliophora, Hypotricha), a Species of the Uroleptus limnetis Complex.

    Science.gov (United States)

    Chen, Lingyun; Lv, Zhao; Shao, Chen; Al-Farraj, Saleh A; Song, Weibo; Berger, Helmut

    2016-05-01

    A Chinese population of the little-known freshwater hypotrich Uroleptus longicaudatus was investigated with emphasis on its living morphology and infraciliature. The characteristic, tripartite body consists of a narrowed (cephalized) anterior portion, a slender trunk, and a long, slender, and strongly contractile tail occupying up to 30% of body length. Contracted specimens with a tail length of about 12% closely resemble Uroleptus limnetis which has, like U. longicaudatus, its type locality on the East Coast of the United States so that it cannot be excluded that these two species are synonymous. Thus, we propose to subsume these and few other little-known species, which are not clearly distinguishable at the present state of knowledge, as U. limnetis complex. The morphogenesis of U. longicaudatus proceeds as in most congeners. The phylogenetic analyses reveal that Uroleptus is a monophyletic group, but due to the lack of detailed morphological data of the populations sequenced so far, the relationships within this taxon remain obscure. For the objective determination of the tail length of hypotrichs, we propose the "1/3-method", which says that the tail commences at that body width which corresponds one-third of the maximum width. Paruroleptus ophryoglena Gelei, 1954 is transferred to Uroleptus: Uroleptus ophryoglena (Gelei, 1954) comb. nov. PMID:26595851

  14. Ontogeny and Molecular Phylogeny of Apoamphisiella vernalis Reveal Unclear Separation between Genera Apoamphisiella and Paraurostyla (Protozoa, Ciliophora, Hypotricha)

    Science.gov (United States)

    Fernandes, Noemi Mendes; Schlegel, Martin; Paiva, Thiago da Silva

    2016-01-01

    Morphology and divisional morphogenesis of the hypotrich ciliate Apoamphisiella vernalis are investigated based on two populations from Brazil. Typical specimens of A. vernalis replicates its ventral ciliature from six fronto-ventral-transverse (FVT) anlagen independently formed for proter and opisthe, plus one or more short anlagen located between IV and V, which form surplus transverse cirri. Dorsal morphogenesis occurs as in typical oxytrichid dorsomarginalians, viz., with formation of three anlagen and fragmentation of the rightmost one. Dorsomarginal kineties are formed near anterior end of right marginal cirral row anlagen. Various anomalous specimens exhibiting more than two long ventral rows were found, which are explained by increasing the number of FVT anlagen and/or the number of cirri produced by anlagen. Comparative ontogeny and phylogenetic analyses based on the 18S rDNA reveal that Apoamphisiella vernalis is closely affine to North American and European strains of the Paraurostyla weissei complex. Their reduced genetic distances and conspicuous morphological variability show that both genera can overlap, which implies the necessity of re-evaluating the contextual relevance of some morphological characters commonly used for genus-level separation within hypotrich taxa. PMID:27196427

  15. First Record and Redefinition of the Qingdao Population of Marine Ciliate Cardiostomatella vermiformis (Kahl, 1928) Corliss, 1960 (Protozoa, Ciliophora)

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    The living morphology and infraciliature of a marine ciliate, Cardiostomatella vermiformis isolated from a sand beach of the Jiaozhou Bay near Qingdao, China, were investigated by live observation, protargol and silver carbonate impregnation methods. Both the morphological and morphometric data largely agree with former records. Based on the data obtained, an improved diagnosis for Cardiostomatella vermiformis is supplied: Large marine Cardiostomatella with cylindrical body shape and several prolonged caudal cilia; cells in vivo about (90-500)μm × (30-120)μm; macronucleus beaded; single contractile vacuole caudally positioned; buccal apparatus conspicuously small, genus typical; three to six postoral kineties; 96-130 somatic kineties. This species is recorded for the first time in China.

  16. Description and Phylogeny of Urostyla grandis wiackowskii subsp. nov. (Ciliophora, Hypotricha) from an Estuarine Mangrove in Brazil.

    Science.gov (United States)

    Paiva, Thiago da Silva; Shao, Chen; Fernandes, Noemi Mendes; Borges, Bárbara do Nascimento; da Silva-Neto, Inácio Domingos

    2016-03-01

    Interphase specimens, aspects of physiological reorganization and divisional morphogenesis were investigated in a strain of a hypotrichous ciliate highly similar to Urostyla grandis Ehrenberg, (type species of Urostyla), collected from a mangrove area in the estuary of the Paraíba do Sul river (Rio de Janeiro, Brazil). The results revealed that albeit interphase specimens match with the known morphologic variability in U. grandis, morphogenetic processes have conspicuous differences. Parental adoral zone is entirely renewed during morphogenesis, and marginal cirri exhibit a unique combination of developmental modes, in which left marginal rows originate from multiple anlagen arising from innermost left marginal cirral row, whereas right marginal ciliature originates from individual within-row anlagen. Based on such characteristics, a new subspecies, namely U. grandis wiackowskii subsp. nov. is proposed, and consequently, U. grandis grandis Ehrenberg, stat. nov. is established. Bayesian and maximum-likelihood analyses of the 18S rDNA unambiguously placed U. grandis wiackowskii as adelphotaxon of a cluster formed by other U. grandis sequences. The implications of such findings to the systematics of Urostyla are discussed. PMID:26426310

  17. Trichodina sp. ( Ciliophora: Peritrichida ) in eel Anguilla anguilla in recirculation systems in Denmark : host-parasite relations

    DEFF Research Database (Denmark)

    Madsen, H.C.K.; Buchmann, Kurt; Mellergaard, Stig

    2000-01-01

    Farmed eel cultured in recirculation systems in Denmark were found infected by Trichodina jadranica Raabe, 1958. Associations between parasite abundance and fish size was examined in 2 different production systems. In one system, stocked with relatively well-nourished eels (3 to 31 g), most of th...... more parasites (0.06 ± 0.02 [SD]) were present on fish with a low condition factor than on fish with a higher condition factor (0.13 ± 0.01 [SD]). In this eel stock the vast majority of the trichodines were found on the gills.......Farmed eel cultured in recirculation systems in Denmark were found infected by Trichodina jadranica Raabe, 1958. Associations between parasite abundance and fish size was examined in 2 different production systems. In one system, stocked with relatively well-nourished eels (3 to 31 g), most of the...... parasites (66%) were found on the dorsal part on the skin and relatively few were found on the gills (approx. 8%). The infection level was significantly positively correlated both with fish weight and length. In the other system, stocked with relatively malnourished small eels (0.5 to 4 g), significantly...

  18. Structure of planktonic ciliates community (Protist, Ciliophora from an urban lake of southern Brazil - doi: 10.4025/actascibiolsci.v35i4.18579

    Directory of Open Access Journals (Sweden)

    Luiz Felipe Machado Velho

    2013-07-01

    Full Text Available This study examined temporal and spatial (vertical variations of composition, richness and abundance of the planktonic ciliates community in an urban and eutrophic lake, as well as identified the limnological factors involved in determining the patterns observed. To this end, samples of ciliates and measures of limnological variables were taken at different depths and hydrological periods. 35 ciliate species were identified, among which 14 species occurred in all periods and strata, being Prostomatida the most specious, followed by Gymnostomatida, Oligotrichida, Peritrichida, and Scuticociliatida. The patterns found for composition, abundance and species richness evidenced a vertical and temporal variation of these attributes. However, in general the composition and species richness have varied more along the vertical gradient than between periods, whereas for the abundance, only temporal differences could be detected. Results observed herein indicated that benthic species seem to be mainly influenced by the amount of organic matter, phosphorus and ammonia, while planktonic ones, abundant at the surface, were mainly associated with higher dissolved oxygen concentrations. In this way, seasonal and vertical variations of limnological characteristics were decisive for the patterns of occurrence and abundance of ciliate species.

  19. DESCRIPTION OF FIVE NEW SPECIES OF HYSTEROCINETIAN CILIATES (CILIOPHORA, HYSTEROCINETIDAE), ENDOCOMMENSAL IN A TERRESTRIAL OLIGOCHAETE OF THE GENUS ALMA FROM CAMEROON

    OpenAIRE

    Nana, Paul; Fokam, Zephyrin; EBAGUE GUY MARTIAL NTOUNGWA; Ngassam, Pierre; Bricheux, Genevieve; Bouchard, Philippe; Ngando, Telesphore

    2012-01-01

    Studies on five new species of hysterocinetian ciliates, endocommensal within a terrestrial oligochaete from the genus Alma (Cameroon), reveal the existence of three distinct types of cytoskeletal topography within their adhesive apparatus. In the first topographical type, four superimposed antagonistic strata of skeletal fibres that correspond to the arrangement observed in the genus Ptychostomum, Stein 1860 are found. The second topographical type is characterized by the existence of an uno...

  20. Ultrastructure observation on the cells at different life history stages of Cryptocaryon irritans (Ciliophora: Prostomatea), a parasitic ciliate of marine fishes.

    Science.gov (United States)

    Ma, Rui; Ni, Bing; Fan, Xinpeng; Warren, Alan; Yin, Fei; Gu, Fukang

    2016-09-01

    Cells of Cryptocaryon irritans at different life history stages were studied using both light and electron microscopy. The characteristics of several organelles were revealed for the first time at the ultrastructural level. It was confirmed that the cytostome of trophonts, protomonts and theronts was surrounded by cilium-palp triplets rather than ciliary triplets. The nematodesmata underlying the circumoral dikinetids were single bundles, whereas these were always paired in Prorodontids. Toxicysts were present in late-stage tomonts and theronts, but were absent in trophonts and protomonts. We posited that toxicysts might play a role in infection and invasion of host-fish tissue by theronts. The adoral brosse was unlike that of any other family of the class Prostomatea based on its location and morphology. Membranous folds were present in trophonts, protomonts and theronts. These folds were longer and more highly developed in C. irritans than in exclusively free-living prostome ciliates suggesting that they might be linked to parasitism in C. irritans. Trophonts, protomonts and theronts had multiple contractile vacuoles. The basic ultrastructure of the contractile vacuole of C. irritans was similar to that of other kinetofragminophoran ciliates. They might play different roles in different stages of the life cycle since their ultrastructure varied among trophonts, protomonts and theronts. PMID:27460894

  1. Size selective feeding in ICyclidium glaucoma/I (Ciliophora, Scuticociliatida) and its effects on bacterial community structure: a study from a continuous cultivation system

    Czech Academy of Sciences Publication Activity Database

    Posch, T.; Jezbera, Jan; Vrba, Jaroslav; Šimek, Karel; Pernthaler, J.; Andreatta, S.; Sonntag, B.

    2001-01-01

    Roč. 42, - (2001), s. 217-227. ISSN 0095-3628 Grant ostatní: ANB(AT) OENB6513; AKTION(AT) projects23p5; AKTION(AT) 2000/22 Keywords : protozoa * bacteria * predator-prey relation Subject RIV: EE - Microbiology, Virology Impact factor: 2.891, year: 2001

  2. First report of Limnoricus ponticus Dovgal and Lozowskiy (Ciliophora: Suctorea) as epibionts on Pycnophyes (Kinorhyncha) from the Indian Ocean with key to species of the genus Limnoricus

    Digital Repository Service at National Institute of Oceanography (India)

    Dovgal, I.; Chatterjee, T.; Ingole, B.S.; Nanajkar, M.

    of Sciences, Ukraine. Measurements of L. ponticus were made from fixed individuals using the computer program ScopePhoto 2.0 for processing of digital images. Results and Discussion Specimens of L. ponticus found on the kinorhynchs have trapeziform body shape...

  3. Morphology and small subunit rRNA gene sequence of Uronemita parabinucleata n. sp. (Ciliophora, Uronematidae), with an improved generic diagnosis.

    Science.gov (United States)

    Liu, Mingjian; Gao, Feng; Al-Farraj, Saleh A; Hu, Xiaozhong

    2016-06-01

    The morphology and infraciliature of a new species, Uronemita parabinucleata n. sp., isolated from intertidal sediments in a coastal region in northern China, were investigated using live observation and silver impregnation methods. The new species is characterized by an in vivo body size of about 20-50×10-25μm, 22 or 23 somatic kineties, two macronuclear nodules, and one caudal cilium. Its small subunit ribosomal RNA gene (SSU rDNA) was sequenced and compared with those of other Uronemita species to reveal nucleotide differences. Phylogenetic analyses indicated that Uronemita is monophyletic and that the new species clusters with its congener Uronemita filificum, with full support provided by both Bayesian inference and maximum likelihood algorithms. Based on previous studies and the present study, an improved diagnosis of the genus Uronemita is supplied, which has been absent since the establishment of this genus. A key to the Uronemita species is also provided. PMID:26999559

  4. Notes on Soil Ciliates (Protozoa, Ciliophora) from The Netherlands, with Description of Keronopsis schminkei nov. spec. and Apobryophyllum schmidingeri nov. spec.

    OpenAIRE

    Foissner, Wilhelm; AL-RASHEID, Khaled

    2007-01-01

    Fifty-six ciliate taxa, including three new species, were found in two soil samples from the Hoge Veluwe National Park in The Netherlands. A literature search showed that The Netherlands, Belgium and Denmark are terra incognita with respect to soil ciliates: only about 100 species have been recorded. Likely, a much greater number, including many undescribed species, can be found on more detailed investigations. Two of the three new species are described in detail. Keronopsis schminkei nov. sp...

  5. Molecular phylogeny and species separation of five morphologically similar Holosticha-complex ciliates (Protozoa, Ciliophora) using ARDRA riboprinting and multigene sequence data

    Science.gov (United States)

    Gao, Feng; Yi, Zhenzhen; Gong, Jun; Al-Rasheid Khaled, A. S.; Song, Weibo

    2010-05-01

    To separate and redefine the ambiguous Holosticha-complex, a confusing group of hypotrichous ciliates, six strains belonging to five morphospecies of three genera, Holosticha heterofoissneri, Anteholosticha sp. pop1, Anteholosticha sp. pop2, A. manca, A. gracilis and Nothoholosticha fasciola, were analyzed using 12 restriction enzymes on the basis of amplified ribosomal DNA restriction analysis. Nine of the 12 enzymes could digest the DNA products, four ( Hinf I, Hind III, Msp I, Taq I) yielded species-specific restriction patterns, and Hind III and Taq I produced different patterns for two Anteholosticha sp. populations. Distinctly different restriction digestion haplotypes and similarity indices can be used to separate the species. The secondary structures of the five species were predicted based on the ITS2 transcripts and there were several minor differences among species, while two Anteholosticha sp. populations were identical. In addition, phylogenies based on the SSrRNA gene sequences were reconstructed using multiple algorithms, which grouped them generally into four clades, and exhibited that the genus Anteholosticha should be a convergent assemblage. The fact that Holosticha species clustered with the oligotrichs and choreotrichs, though with very low support values, indicated that the topology may be very divergent and unreliable when the number of sequence data used in the analyses is too low.

  6. Phylogenetic relationships within the genus Aspidisca (Protozoa, Ciliophora, Euplotida) revealed by ITS1-5.8S-ITS2 region sequences

    Science.gov (United States)

    Huang, Jie; Yi, Zhenzhen; Miao, Miao; Al-Rasheid, Khaled A. S.; Song, Weibo

    2011-03-01

    The internal transcribed spacer regions (ITS1 and ITS2) and 5.8S rRNA genes were sequenced in six populations of four Aspidisca species, namely A. leptaspis, A. orthopogon, A. magna and A. aculeata. Phylogenetic trees were constructed by means of Bayesian inference (BI), Maximum Parsimony (MP), Neighbor-Joining (NJ), and Maximum Likelihood (ML) to assess the inter- and intra-species relationships within the genus Aspidisca. All trees show similar topologies with stable supports and indicate that: (1) four well known groups, i.e., Oligotrichia, Stichotrichia, Choreotrichia and Hypotrichia, are distinctly outlined within the class Spirotrichea, and all are monophyletic other than Hypotrichia; (2) members of Aspidisca can be distinguished well, based on the ITS1-5.8S-ITS2 region sequences, and A. leptaspis and A. magna shared a closer relationship than other species; (3) Aspidisca and Euplotes branch early in the subclass Hypotrichia. To compare the phylogenetic relationships based on different genes, SSU rRNA trees were also constructed with nearly the same species inclusion, which revealed different topologies of inter-species, inter-genera and inter-subclasses.

  7. Phylogenetic positions of two marine ciliates, Metanophrys similis and Pseudocohnilembus hargisi (Protozoa, Ciliophora, Scuticociliatia), inferred from complete small subunit rRNA gene sequences

    Institute of Scientific and Technical Information of China (English)

    2006-01-01

    The small subunit rRNA (SSrRNA) gene was sequenced for two marine scuticociliates Metanophrys similis and Pseudocohnilembus hargisi. The results show that this gene comprises 1763 and 1753 nucleotides in the two marine ciliates respectively.Metanophrys similis is phylogenetically closely related to the clade containing Mesanophrys carcini and Anophyroides haemophila, which branches basally to other species within the order Philasterida. Pseudocohnilembus hargisi groups with its congener, P. marinus, with strong bootstrap support. Paranophrys magna groups with the clade including Cohnilembus and Uronema, representing a sister clade to that containing the two Pseudocohnilembus species.

  8. Morphology and SSU rDNA sequence analysis of two hypotrichous ciliates (Protozoa, Ciliophora, Hypotrichia) including the new species Metaurostylopsis parastruederkypkeae n. sp.

    Science.gov (United States)

    Lu, Borong; Wang, Chundi; Huang, Jie; Shi, Yuhong; Chen, Xiangrui

    2016-05-01

    The morphology and phylogeny of two hypotrichous ciliates, Metaurostylopsis parastruederkypkeae n. sp. and Neourostylopsis flavicana (Wang et al., 2011) Chen et al., 2013 were investigated based on morphology, infraciliature and the small subunit (SSU) ribosomal RNA gene (rRNA) sequence. The new species, M. parastruederkypkeae n. sp. was identified according to its characteristics: body shape ellipsoidal, size about (165-200) × (45-60) μm in vivo, cell color reddish; two types of cortical granules including wheat grain-like and yellow-greenish larger ones along the marginal cirri rows and dorsal kineties and dot-like and reddish smaller ones, grouped around marginal cirri on ventral side and arranged in short lines on dorsal side; 26-41 adoral membranelles; three frontal and one parabuccal, five to seven frontoterminal, one buccal, and three to six transverse cirri; seven to thirteen midventral pairs; five to nine unpaired ventral cirri, five to seven left and three to five right marginal rows; and three complete dorsal kineties. Phylogenetic analysis based on SSU rDNA sequences showed that both Metaurostylopsis and Neourostylopsis are monophyletic. As the internal relationship between and within both genera are not clear, further studies on the species in these two genera are necessary. The key characteristics of all known twelve Metaurostylopsis-Apourostylopsis-Neourostylopsis species complex were updated.

  9. Application of fluorescence resonance energy transfer techniques to the study of lectin-binding site distribution on Paramecium primaurelia (Protista, Ciliophora) cell surface.

    Science.gov (United States)

    Locatelli, D; Delmonte Corrado, M U; Politi, H; Bottiroli, G

    1998-01-01

    Fluorescence resonance energy transfer (FRET) is a photophysical phenomenon occurring between the molecules of two fluorochromes with suitable spectral characteristics (donor-acceptor dye pair), and consisting in an excitation energy migration through a non-radiative process. Since the efficiency of the process is strictly dependent on the distance and reciprocal orientation of the donor and acceptor molecules, FRET-based techniques can be successfully applied to the study of biomolecules and cell component organisation and distribution. These techniques have been employed in studying Paramecium primaurelia surface membrane for the reciprocal distribution of N-acetylneuraminic acid (NeuAc) and N-acetylglucosamine (GlcNAc) glycosidic residues, which were found to be involved in mating cell pairing. NeuAc and GlcNAc were detected by their specific binding lectins, Limulus polyphemus agglutinin (LPA) and wheat germ agglutinin (WGA), respectively. Microspectrofluorometric analysis afforded the choice of fluorescein isothiocyanate and Texas red conjugated with LPA and WGA, respectively, as a suitable donor-acceptor couple efficiently activating FRET processes. Studies performed both in solution and in cells allowed to define the experimental conditions favourable for a FRET analysis. The comparative study carried out both on the conjugating-region and the non conjugating region of the surface membrane, indicates that FRET distribution appears quite homogeneous in mating-competent mating type (mt) I, whereas, in mating-competent mt II cells, FRET distribution seems to be preferentially localised on the conjugating-region functionally involved in mating cell pairing. This difference in the distribution of lectin-binding sites is suggested to be related to mating-competence acquisition. PMID:9857246

  10. Morphology and phylogeny of three karyorelictean ciliates (Protista, Ciliophora), including two novel species, Trachelocerca chinensis sp. n. and Tracheloraphis dragescoi sp. n.

    Science.gov (United States)

    Xu, Yuan; Yan, Ying; Li, Lifang; Al-Rasheid, Khaled A S; Al-Farraj, Saleh A; Song, Weibo

    2014-12-01

    This paper investigates the morphology and infraciliature of three karyorelictean ciliates, Trachelocerca chinensis sp. n., Tracheloraphis dragescoi sp. n. and a rarely known form, Geleia acuta (Dragesco, 1960) Foissner, 1998, which were isolated from the intertidal zone of sandy beaches at Zhanjiang and Qingdao, China. Trachelocerca chinensis sp. n. is distinguished from related forms by having 26-30 somatic kineties, a narrow glabrous stripe and a single nuclear group composed of approximately four to six macronuclei and two micronuclei. Tracheloraphis dragescoi sp. n. can be recognized through its 14-22 somatic kineties, wide glabrous stripe and a single nuclear group composed of about four macronuclei. Phylogenetic analyses based on small-subunit (SSU) rRNA gene sequences indicated that the genera Trachelocerca and Tracheloraphis are closely related but that neither of them appears to be a clearly monophyletic group. Nonetheless, the monophyly of Trachelocerca is not rejected by the approximately unbiased (AU) test (P = 0.143, >0.05), although that of Tracheloraphis is rejected (P = 0.011, <0.05). Geleia acuta, meanwhile, branched with Geleia fossata and falls in the Geleia clade. PMID:25238761

  11. Synthesis of the signal molecule acetylcholine during the developmental cycle of Paramecium primaurelia (Protista, Ciliophora) and its possible function in conjugation.

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    Delmonte Corrado, M U; Politi, H; Ognibene, M; Angelini, C; Trielli, F; Ballarini, P; Falugi, C

    2001-06-01

    We recently discovered, in mating-competent Paramecium primaurelia, the presence of functionally related molecules of the cholinergic system: the neurotransmitter acetylcholine (ACh), both its nicotinic and muscarinic receptors and its lytic enzyme acetylcholinesterase (AChE). Our results on the inhibition of mating-cell pairing in vivo in mating-competent cells treated with cholinomimetic drugs support the hypothesis that the cholinergic system plays a role in cell-to-cell adhesion. To investigate the possible function of the signal molecule ACh in conjugation in P. primaurelia, we attempted to detect the intracellular sites of ACh synthesis by localizing the ACh biosynthetic enzyme choline acetyltransferase (ChAT). Using immunocytochemical and histochemical methods, we have demonstrated the presence and activity of ChAT principally on the surface membrane of mating-competent cells and of mature but non-mating-competent cells. No evidence for ChAT activity was found in immature cells. Immunoblot analysis revealed the presence of immunoreactive bands, ranging in molecular mass from 42 to 133 kDa, as reported for ChAT isolated from higher organisms. In vivo experiments showed that inhibition of ChAT activity by Congo Red, known to be a potent competitive inhibitor of acetyl coenzyme A, did not affect mating-cell pairing. Conversely, inhibition of AChE with BW 284c51 or eserine, which block enzyme activity by reacting with a specific serine within the catalytic centre, significantly inhibited mating-cell pairing. Our results suggest that ACh has a negative modulating effect on conjugation in P. primaurelia. PMID:11441032

  12. Redescriptions of three trachelocercid ciliates (Protista, Ciliophora, Karyorelictea), with notes on their phylogeny based on small subunit rRNA gene sequences.

    Science.gov (United States)

    Yan, Ying; Xu, Yuan; Yi, Zhenzhen; Warren, Alan

    2013-09-01

    Three trachelocercid ciliates, Kovalevaia sulcata (Kovaleva, 1966) Foissner, 1997, Trachelocerca sagitta (Müller, 1786) Ehrenberg, 1840 and Trachelocerca ditis (Wright, 1982) Foissner, 1996, isolated from two coastal habitats at Qingdao, China, were investigated using live observation and silver impregnation methods. Data on their infraciliature and morphology are supplied. The small subunit rRNA (SSU rRNA) genes of K. sulcata and Trachelocerca sagitta were sequenced for the first time. Phylogenetic analyses based on SSU rRNA gene sequence data indicate that both organisms, and the previously sequenced Trachelocerca ditis, are located within the trachelocercid assemblage and that K. sulcata is sister to an unidentified taxon forming a clade that is basal to the core trachelocercids. PMID:23847285

  13. Morphology and phylogenetic analysis of two oxytrichid soil ciliates from China, Oxytricha paragranulifera n. sp. and Oxytricha granulifera Foissner and Adam, 1983 (Protista, Ciliophora, Hypotrichia).

    Science.gov (United States)

    Shao, Chen; Lv, Zhao; Pan, Ying; Al-Rasheid, Khaled A S; Yi, Zhenzhen

    2014-09-01

    The morphology and infraciliature of two hypotrichous ciliates, Oxytricha paragranulifera n. sp. and Oxytricha granulifera Foissner and Adam, 1983, collected respectively from the surface of a sandy soil in the Huguang mangrove forest, Zhanjiang, China, and the surface of soil in a forest beside Ziwu Road, Xian, north-west China, were examined. O. paragranulifera n. sp. is characterized by an elongate body with slightly tapered anterior end, two macronuclear nodules and two micronuclei, paroral and endoral in Stylonychia-pattern, colourless cortical granules distributed in clusters or irregular short rows, adoral zone occupying 37 % of the body length, marginal rows almost confluent posteriorly, six dorsal kineties and three caudal cirri, caudal cirri and dorsal bristles almost indistinguishable when viewed in vivo. The well-known O. granulifera Foissner and Adam, 1983 was also redescribed and can be separated from the novel species by having cortical granules arranged along dorsal kineties and marginal rows on both sides (vs grouped in clusters as well as in short irregular rows), paroral and endoral in Oxytricha-pattern (vs in Stylonychia-pattern), macronuclear nodules obviously detached (vs adjacent) and a non-saline terrestrial habitat (vs saline terrestrial). The separation of these two taxa is also firmly supported by the molecular data, which show a significant difference between the two in their SSU rRNA gene sequences (similarity 97.1 %). Phylogenetic analyses based on SSU rRNA gene sequence data suggest a close relationship within the Oxytrichidae assemblage between O. paragranulifera n. sp. and O. granulifera. PMID:24928427

  14. Phylogeny and classification of the Litostomatea (Protista, Ciliophora), with emphasis on free-living taxa and the 18S rRNA gene.

    Science.gov (United States)

    Vd'ačný, Peter; Bourland, William A; Orsi, William; Epstein, Slava S; Foissner, Wilhelm

    2011-05-01

    The class Litostomatea is a highly diverse ciliate taxon comprising hundreds of species ranging from aerobic, free-living predators to anaerobic endocommensals. This is traditionally reflected by classifying the Litostomatea into the subclasses Haptoria and Trichostomatia. The morphological classifications of the Haptoria conflict with the molecular phylogenies, which indicate polyphyly and numerous homoplasies. Thus, we analyzed the genealogy of 53 in-group species with morphological and molecular methods, including 12 new sequences from free-living taxa. The phylogenetic analyses and some strong morphological traits show: (i) body polarization and simplification of the oral apparatus as main evolutionary trends in the Litostomatea and (ii) three distinct lineages (subclasses): the Rhynchostomatia comprising Tracheliida and Dileptida; the Haptoria comprising Lacrymariida, Haptorida, Didiniida, Pleurostomatida and Spathidiida; and the Trichostomatia. The curious Homalozoon cannot be assigned to any of the haptorian orders, but is basal to a clade containing the Didiniida and Pleurostomatida. The internal relationships of the Spathidiida remain obscure because many of them and some "traditional" haptorids form separate branches within the basal polytomy of the order, indicating one or several radiations and convergent evolution. Due to the high divergence in the 18S rRNA gene, the chaeneids and cyclotrichiids are classified incertae sedis. PMID:21333743

  15. Further consideration of the phylogeny of some "traditional" heterotrichs (Protista, Ciliophora) of uncertain affinities, based on new sequences of the small subunit rRNA gene.

    Science.gov (United States)

    Miao, Miao; Song, Weibo; Clamp, John C; Al-Rasheid, Khaled A S; Al-Khedhairy, Abdulaziz A; Al-Arifi, Saud

    2009-01-01

    The systematic relationships and taxonomic positions of the traditional heterotrich genera Condylostentor, Climacostomum, Fabrea, Folliculina, Peritromus, and Condylostoma, as well as the licnophorid genus Licnophora, were re-examined using new data from sequences of the gene coding for small subunit ribosomal RNA. Trees constructed using distance-matrix, Bayesian inference, and maximum-parsimony methods all showed the following relationships: (1) the "traditional" heterotrichs consist of several paraphyletic groups, including the current classes Heterotrichea, Armophorea and part of the Spirotrichea; (2) the class Heterotrichea was confirmed as a monophyletic assemblage based on our analyses of 31 taxa, and the genus Peritromus was demonstrated to be a peripheral group; (3) the genus Licnophora occupied an isolated branch on one side of the deepest divergence in the subphylum Intramacronucleata and was closely affiliated with spirotrichs, armophoreans, and clevelandellids; (4) Condylostentor, a recently defined genus with several truly unique morphological features, is more closely related to Condylostoma than to Stentor; (5) Folliculina, Eufolliculina, and Maristentor always clustered together with high bootstrap support; and (6) Climacostomum occupied a paraphyletic position distant from Fabrea, showing a close relationship with Condylostomatidae and Chattonidiidae despite of modest support. PMID:19527351

  16. Does Kiitricha (Protista, Ciliophora, Spirotrichea) belong to Euplotida or represent a primordial spirotrichous taxon? With suggestion to establish a new subclass Protohypotrichia.

    Science.gov (United States)

    Li, Lifang; Shao, Chen; Song, Weibo; Lynn, Denis H; Chen, Zigui; Shin, Mann Kyoon

    2009-02-01

    The genus Kiitricha was long assumed to be the most primordial taxon in the Stichotrichia [hypotrichs sensu lato (s. l.)] based on its morphological features and was considered to be an intermediate between heterotrichs and the traditional hypotrichous assemblage. In order to evaluate the phylogenetic position of Kiitricha within the Hypotrichia, we sequenced the small-subunit rRNA gene and the alpha-tubulin gene for a Qingdao population of Kiitricha marina. Phylogenetic trees were constructed and compared to morphological and morphogenetic data. The results show that (i) Kiitricha is positioned near Phacodinium, both of which always form a sister clade to the assemblage including Stichotrichia, Hypotrichia, Oligotrichia and Choreotrichia, (ii) Kiitricha, which may represent an intermediate between heterotrichs (s. l.) and the Stichotrichia-Hypotrichia complex, is probably an ancestor-like form of the latter group and (iii) in contrast to morphological characters, both molecular and ontogenetic data support the separation of Kiitricha from the hypotrichs (s. l.). Thus, Kiitricha might be placed in the class Spirotrichea at about subclass level, next to Phaconidiidia, Hypotrichia and Stichotrichia, which supports the establishment of a new subclass Protohypotrichia n. subclass within the class Spirotrichea, with characterizations including slightly differentiated somatic ciliature (i.e. cirri on the ventral side generally uniform and non-grouped, no clearly defined marginal cirral rows, ciliature on the dorsal side mixed with cirri and dikinetids, no clearly differentiated dorsal kineties) and a unique but intermediate morphogenetic pattern of cortical structures between Hypotrichia and Stichotrichia. PMID:19196792

  17. Taxonomy and phylogeny of two species of the genus Deviata (Protista, Ciliophora) from China, with description of a new soil form, Deviata parabacilliformis sp. nov.

    Science.gov (United States)

    Li, Fengchao; Lv, Zhao; Yi, Zhenzhen; Al-Farraj, Saleh A; Al-Rasheid, Khaled A S; Shao, Chen

    2014-11-01

    The morphology and morphogenesis of a soil hypotrichous ciliate, Deviata parabacilliformis sp. nov., isolated from northern China, were investigated. D. parabacilliformis measures about 75-210 × 25-60 µm in vivo, with an elongate and flexible body. It possesses one right marginal row, two to four left marginal rows and three dorsal kineties. The main morphogenetic features of D. parabacilliformis are: (i) the oral primordium originates de novo; (ii) anlage IV of the opisthe originates from parental frontoventral row V, anlage V originates de novo, and anlage VI forms from frontoventral row VI; and (iii) anlage I of the proter originates from the anterior portion of the parental paroral, anlage II originates from the buccal cirrus, anlage III originates from the parabuccal cirri, anlage IV originates from parental frontoventral row IV and anlage V forms from the anterior of parental frontoventral row VI. The morphology of an edaphic population of another species of the genus Deviata, Deviata bacilliformis (Gelei 1954) Eigner 1995, was also investigated. This work also provides the first record of SSU rRNA gene sequences for species of the genus Deviata. Molecular phylogenetic analysis suggests that Deviata is not monophyletic, and its position is poorly resolved due to weak phylogenetic signal of the 18S marker in the Stichotrichida. PMID:25139418

  18. Morphology, ontogenetic features and SSU rRNA gene-based phylogeny of a soil ciliate, Bistichella cystiformans spec. nov. (Protista, Ciliophora, Stichotrichia).

    Science.gov (United States)

    Fan, Yangbo; Hu, Xiaozhong; Gao, Feng; Al-Farraj, Saleh A; Al-Rasheid, Khaled A S

    2014-12-01

    The morphology, ontogeny and SSU rRNA gene-based phylogeny of Bistichella cystiformans spec. nov., isolated from the slightly saline soil of a mangrove wetland in Zhanjiang, southern China, were investigated. The novel species was characterized by having five to eight buccal cirri arranged in a row, three to five transverse cirri, four macronuclear nodules aligned, and 17-32 and 20-34 cirri in frontoventral rows V and VI, respectively, both extending to the transverse cirri. The main ontogenetic features of the novel species were as follows: (1) the parental adoral zone of the membranelles is completely inherited by the proter; (2) the frontoventral and transverse cirri are formed in a six-anlagen mode; (3) basically, the frontal-ventral-transverse cirral anlagen II-V generate one transverse cirrus each at their posterior ends, while anlage VI provides no transverse cirrus; (4) both marginal rows and dorsal kineties develop intrakinetally, no dorsal kinety fragment is formed; and (5) the macronuclear nodules fuse into a single mass at the middle stage. Phylogenetic analyses based on the SSU rRNA gene showed that the novel species groups with the clade containing Bistichella variabilis, Parabistichella variabilis, Uroleptoides magnigranulosus and two species of the genus Orthoamphisiella. Given present knowledge, it was considered to be still too early to come to a final conclusion regarding the familial classification of the genus Bistichella; further investigations of key taxa with additional molecular markers are required. PMID:25242538

  19. Phylogenetic positions of four hypotrichous ciliates (Protista, Ciliophora) based on SSU rRNA gene, with notes on their morphological characters.

    Science.gov (United States)

    Yang, Caiting; Liu, An; Xu, Yusen; Xu, Yuan; Fan, Xinpeng; Al-Farraj, Saleh A; Ni, Bing; Gu, Fukang

    2015-01-01

     The morphology and infraciliature of the four hypotrichous ciliates; Rigidohymena inquieta (Stokes, 1887) Berger, 2011, Pattersoniella vitiphila Foissner, 1987, Notohymena australis Foissner & O' Donoghue, 1990, and Cyrtohymena (Cyrtohymenides) australis (Foissner, 1995) Foissner, 2004, collected from east China, were investigated by using live observation and protargol impregnation method. An improved diagnosis for R. inquieta was supplied based on descriptions of present and previous populations. New morphology and morphogenesis information based on Chinese populations of another three hypotrichids were also supplemented. The Small-subunit rRNA (SSU rRNA) gene sequences of the four species were characterized and their phylogenetic positions were revealed by means of Bayesian inference and Maximum-likelihood analysis. The analyses shows that R. inquieta clusters with other members of the subfamily Stylonychinae, which confirms the monophyly of the subfamily and verified R. inquieta as a separated species from R. candens though it differs from others mainly by body size. C. (C.) australis occupying the basal position of the clade which contains cyrtohymenids and some other groups, declines the idea of separating Cyrtohymena into two subgenus. Notohymena australis and China population of Pattersoniella vitiphila respectively clustering with their congeners correspond well with the systematics revealed by morphological similarities. PMID:26623736

  20. Occurrence of Trichodinid Ciliophorans (Ciliophora: Peritrichida) in the freshwater fishes of the river Churni with description of Trichodina glossogobae sp. nov. in West Bengal, India.

    Science.gov (United States)

    Mitra, Amlan Kumar; Bandyopadhyay, Probir K; Gong, Yingchun; Bhowmik, Biplab

    2012-04-01

    Between January 2011 and March 2011 occurrence of trichodinid ciliophorans were studied in the freshwater fishes of the river Churni. The biodiversity survey revealed presence of a new species of the genus Trichodina (Ehrenberg 1830) infesting Glossogobius giuris (Hamilton-Buchanan). Another freshwater fish Labeo bata (Hamilton 1822) were found to be infested with two species of the genus Tripartiella Lom 1959: Tripartiella bulbosa (Davis 1947) Lom 1959 and T. copiosa Lom 1959. Adhesive disc size of the new Trichodina species is small measuring 30.6-46.9 (36.2 ± 3.9) μm in diameter. The centre of the disc is finely granular and transforms into dark when impregnated with silver. The overall prevalence of this species is 15.6% (12/77). Tripartiella bulbosa and T. copiosa are very small sized ciliophorans, measuring 16.7-23.8 (20.6 ± 2.2) μm and 15.2-22.4 (19.7 ± 1.9) μm in diameter, respectively. PMID:23542238

  1. Abundance and species composition of planktonic Ciliophora from the wastewater discharge zone in the Bahía Blanca Estuary, Argentina

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    María Sonia Barría de Cao

    2003-09-01

    Full Text Available The specific composition and abundance variation of the ciliate community from a wastewater discharge zone in the Bahía Blanca estuary, Argentina, were studied all throughout a year, from June 1995 to May 1996. The polluted area exhibited high values of particulate organic matter and nutrients, particularly phosphates. Aloricate ciliates were represented by 15 species belonging to the genera Strombidium Claparède & Lachmann, 1859; Strombidinopsis Kent, 1881; Cyrtostrombidium Lynn & Gilron, 1993; Strobilidium Schewiakoff, 1983; Lohmmanniella Leegaard, 1915 and Tontonia Fauré-Fremiet, 1914. Tintinnids were represented by nine species belonging to the genera Tintinnidium Kent, 1881, Tintinnopsis Stein, 1867 and Codonellopsis Jörgensen, 1924. The total abundance of aloricate ciliates reached a peak of 1,800 ind. 1-1 and the total abundance of tintinnids reached a peak of 9,400 ind. 1-1. Tintinnidium balechi Barría de Cao, 1981 was the most abundant ciliate in the community. Considerations on the presence and abundance of ciliates are made in relation to physicochemical and biochemical parameters.

  2. The small subunit rRNA gene sequence of the chonotrich Chilodochona carcini Jankowski, 1973 confirms chonotrichs as a dysteriid-derived clade (Phyllopharyngea, Ciliophora).

    Science.gov (United States)

    Lynn, Denis H

    2016-08-01

    The chonotrichs are sessile ciliated protozoa that are ectosymbiotic on the body parts of a variety of crustaceans. They have long been considered a separate group because their sessile habit has resulted in the evolution of a very divergent body form and reproductive strategy compared to free-living ciliates. In the mid-20th Century, the free-living dysteriid cyrtophorian ciliates were proposed as a potential sister clade because the chonotrich bud or daughter cell showed similarities during division morphogenesis (i.e. ontogeny) to these free-living dysteriids. A single small subunit (SSU) rRNA gene sequence is available for the chonotrich Isochona sp. However, its authenticity has recently been questioned, and the placement of this sequence within the dysteriid clade has added to this controversy. In this report, the SSUrRNA gene sequence of the chonotrich Chilodochona carcini, ectosymbiotic on the green crab Carcinus maenas, is provided. Topology testing of the SSUrRNA gene phylogeny, constructed by Bayesian Inference, robustly supports the sister-group relationship of Isochona sp. and Chilodochona carcini, the monophyly of these two chonotrichs, and the divergence of the chonotrich clade within the dysteriid clade. PMID:27151876

  3. Re-evaluation of the phylogenetic position of the genus Dexiotrichides (Protozoa, Ciliophora, Scuticociliatida) inferred from stomatogenetic and molecular information for Dexiotrichides pangi

    Institute of Scientific and Technical Information of China (English)

    SONG Weibo; Alan WARREN; David ROBERTS; SHANG Huimin; MA Hongwei; Norbert WILBERT; MIAO Miao; YI Zhenzhen

    2005-01-01

    The divisional process and systematic position of the marine scuticociliate Dexiotrichides pangi are studied. Based on both stomatogenetic data and 18S rDNA gene sequences, the phylogeny and morphogenetic characteristics of this taxon, and of other related genera, are analyzed and discussed. Both the divisionary events and the molecular biological data indicate that this species/genus, together with certain other genera in the Dexiotricha-complex, occupies an intermediate position between the tetrahymenids and the "typical" scuticociliate, which suggests that the Dexiotricha-like taxa should be excluded from the "true" scuticociliates. As a further contribution, the process of stomatogenesis in D. pangican be summarized as follows: (1) The oral primordia in the opisthe are formed only by the proliferation of basal bodies in the scutica field, which subsequently develop intothree membranelles, while the new paroral membrane seems to be generated by the sub-anterior portion of somatic kinety 1 (the 1st postoral intercalary kinety). The latter character exhibits a mode similar to Tetrahymena. (2) In the proter the parental membranelles are retained and remain unchanged throughout the entire division process; only the old paroral membrane is disassembled and differentiated into the anlage, which then gives rise to the new paroral membrane and the scutica of the proter. The 18S rRNA gene sequence reported here isthe first one for a ciliate in the Dexiotricha-complex.

  4. Tintininos (Ciliophora, Tintinnina de águas subtropicais na região Sueste-Sul do Brasil: I. Famílias Codonellidae, Codonellopsidae, Coxliellidae, Cyttarocylidae, Epiplocylidae, Petalotrichidae, Ptychocylidae, Tintinnididae e Undellidae Tintinnids (Ciliophora, Tintinnina from subtropical waters of the Southern Brazil: I. Families Codonellidae, Codonellopsidae, Coxliellidae, Cyttarocylidae, Epiplocylidae, Petalotrichidae, Ptychocylidae, Tintinnididae and Undellidae

    Directory of Open Access Journals (Sweden)

    Luciano Felício Fernandes

    2004-09-01

    Full Text Available Um levantamento taxonômico dos tintininos (Subordem Tintinnina coletados em águas subtropicais do Sul do Brasil (22°S-34°S foi realizado, com base em diferentes cruzeiros oceanográficos abrangendo águas oceânicas e de plataforma. Oitenta e nove espécies foram registradas, e Amphorides amphora (Claparède & Lachmann, 1858 Strand, 1928, Dadayella ganimedes (Entz, 1884 Kofoid & Campbell, 1929, Eutintinnus spp., Rhabdonellopsis apophysata (Cleve, 1900 Kofoid & Campbell, 1929, Tintinnopsis spp. (águas neríticas e Xystonellopsis spp. foram abundantes. Para todas as espécies foram fornecidos descrições, medidas e desenhos, bem como comentários sobre taxonomia e resultados referentes às distribuições horizontal e vertical na coluna de água. Algumas espécies mostraram preferência por águas profundas como Epicancella nervosa (Cleve, 1900 Kofoid & Campbell, 1929, Xystonellopsis spp., Salpingella spp. e Brandtiella palliata (Brandt, 1906 Kofoid & Campbell, 1929. Neste trabalho foram estudas as Famílias Codonellidae, Codonellopsidae, Coxliellidae, Cytarocyllidae, Epiplocylidae, Petalotrichidae, Ptychocylidae, Tintinnididae e Undellidae. As outras quatro famílias foram cobertas em outro trabalho, também contendo a discussão sobre biogeografia e distribuição vertical na coluna de água.A taxonomic survey on the tintinnids (Suborder Tintinnina collected in subtropical waters of the Southern Brazil (22°S-34°S was carried out, based in different oceanographic cruises covering shelf and oceanic waters. Eighty nine species were recorded, and Amphorides amphora (Claparède & Lachmann, 1858 Strand, 1928, Dadayella ganimedes (Entz, 1884 Kofoid & Campbell, 1929, Eutintinnus spp., Rhabdonellopsis apophysata (Cleve, 1900 Kofoid & Campbell, 1929 , Tintinnopsis spp. (neritic waters and Xystonellopsis spp. were abundant. For all of species descriptions, measurements and drawings, as well comments on the taxonomy and results on horizontal and vertical distributions on the water column were furnished. Some species showed preference by deep waters, like Epicancella nervosa (Cleve, 1900 Kofoid & Campbell, 1929, Xystonellopsis spp., Salpingella spp. and Brandtiella palliata (Brandt, 1906 Kofoid & Campbell, 1929. In this work the families Codonellidae, Codonellopsidae, Coxliellidae, Cytarocyllidae, Epiplocylidae, Petalotrichidae, Ptychocylidae, Tintinnididae and Undellidae were studied. The other four families were covered in another work, also containing the discussion about biogeography and vertical distribution in the water column.

  5. Tintininos (Ciliophora, Tintinnina de águas subtropicais na região Sueste-Sul do Brasil: II. Famílias Dictyocystidae, Rhabdonellidae, Tintinnidae e Xystonellidae Tintinnids (Ciliophora, Tintinnina from subtropical waters of the Southern Brazil: II. Families Dictyocystidae, Rhabdonellidae, Tintinnidae and Xystonellidae

    Directory of Open Access Journals (Sweden)

    Luciano Felício Fernandes

    2004-09-01

    Full Text Available Este estudo segue um trabalho prévio sobre o levantamento taxonômico dos tintininos (Subordem Tintinnina coletados em águas subtropicais do sul do Brasil (22°S-34°S. As amostras foram baseadas em diferentes cruzeiros oceanográficos cobrindo águas de plataforma e oceano. As espécies pertencentes às Famílias Dictyocystidae, Rhabdonellidae, Tintinnidae e Xystonellidae foram descritas, e uma discussão geral referente à biogeografia de tintininos e à distribuição vertical na coluna de água observada em cruzeiros oceanográficos foi realizada. Para todas as espécies foram fornecidos descrições, medidas e desenhos, bem como comentários sobre a taxonomia e resultados sobre as distribuições horizontal e vertical na coluna de água. A riqueza em espécies foi elevada (87 táxons infragenéricos, e algumas das espécies como Climacocylis scalaria, Eutintinnus spp., Salpingacantha spp., Salpingella spp. e Steenstrupiella gracilis, não haviam sido registradas na região anteriormente. Dezenove species são novos registros para o Oceano Atlântico Sul Ocidental.This study follows a previous work on the taxonomic survey on tintinnids (Suborder Tintinnina collected in subtropical waters of the Southern Brazil (22°S-34°S. Samples were based in different oceanographic cruises covering shelf and oceanic waters. Here, the species belonging to Families Dictyocystidae, Rhabdonellidae, Tintinnidae and Xystonellidae were described, and a general discussion regarding the tintinnid biogeography and the vertical distribution observed in some of the oceanographic cruises were carried out. For all of species the descriptions, measurements and drawings, as well comments on the taxonomy and results on horizontal and vertical distributions on the water column were furnished. The species richness was high (87 infrageneric taxa, and some species like Climacocylis scalaria, Eutintinnus spp., Salpingacantha spp., Salpingella spp. and Steenstrupiella gracilis were not previously recorded in the region. Nineteen species are new records for the Southwestern Atlantic Ocean.

  6. STOMATOGENESIS AND MORPHOLOGICAL REDESCRIPTION OF PSEUDOCOHNILEMBUS PERSALINUS (CILIOPHORA:SCUTICOCILIATIDA)%海洋纤毛虫--水滴伪康纤虫的口器发生及形态学重描述

    Institute of Scientific and Technical Information of China (English)

    潘旭明; 马洪钢; 邵晨; 林晓凤; 胡晓钟

    2012-01-01

    利用蛋白银法对采自山东胶州育虾池的一种海洋盾纤类纤毛虫,水滴伪康纤虫 (Pseudocohnilembuspersalinus Evans & Thompson,1964)的口器发生过程进行了详细的观察和研究,并对其形态学做了补足性描述.文章通过对该青岛种群发生过程的研究,认为前人所报道的种群(Evans & Thompson,1964;Pomp &Wilbert,1988) 缺乏对某个发生关键时期的观察而存在着错误,即:后仔虫的小膜2 明确来自老的口侧膜,而不是前人报道的盾片.此外,文章还发现该种的发生与本属另一哈氏伪康纤虫的发生过程几乎完全相同.主要细胞发生过程为:盾片最先增殖,形成初级原基区,然后分裂成前后两部分,前部分最终消失,而后部分最终形成后仔虫的小膜3.继盾片增殖之后口侧膜的锯齿状结构沿细胞纵轴方向分裂成两列,右侧的一列增殖形成次级原基区,之后分裂成前后两部分,前部分迁移形成后仔虫的口侧膜和盾片,后部分形成后仔虫的小膜1 和小膜2;老口侧膜的残余部分形成前仔虫的口侧膜及盾片.老的小膜1、小膜2 和小膜3 则完全为前仔虫所继承.%Pseudocohnilembus species are ubiquitous in various habitats worldwide and play a great role on the circulation of ecological systems, therefore there are many reports concerning their morphology and diversity. However, these species remain insufficiently described owing to lack of detailed description of morphology in vivo, infraciliature. Divisional morphogenesis can provide evidences to support conceptual schemes of phylogenetic interrelationships among Scuticociliates, but the detailed morphogenesis information of these species remains unknown. The morphology and morphogenesis of Pseudocohnilembus persalinus, isolated from coast waters off Qingdao, were investigated by using protargol impregnation method in this paper. The new information of morphology and morphogenesis of this species was supplied, and a steady mode of morphogenesis in genus Pseudocohnilembus was established. Ciliates were collected in July, 2010, from coast off Qingdao (Tsingtao, 36° 08' N; 120° 43' E), China. The salinity was 20%o and the pH was 7.5. After isolation, specimens were maintained as pure or raw cultures in Petri dishes in the laboratory for days to weeks with rice grains as food source for bacteria. Living observations were made under a microscope equipped with phase-contrast apparatus. Protargol impregnation method was used to reveal the infraciliature in different morphoge-netic stages. Measurements were carried out under oil immersion (1250 x). Drawings were performed with the help of camera lucida. The result showed that the Qingdao population of this species possessed typical characteristics of the genus Pseudocohnilembus: the buccal apparatus consisted of 3 highly specialized membranelles; membranelle 1 comprised single row of kinetosomes, was parallel to membranelle 2, and lied anterior to the paroral membrane; membranelle 2 was longer than membranelle 1 and also comprised of one row of kinetosomes; membranelle 3 was located near the middle of the paroral membrane and comprised 3 rows of kinetosomes. In terms of live morphology and infraciliature, the Qingdao population corresponded well with previous ones. Its stomatogenesis proceeded generally in the similar way as in other congeners, and indicated evidently that the descriptions about P. persalinus by Evans & Corliss (1964) and Pomp & Wilbert (1988) were incomplete and incorrect: the membranelle 2 was derived from, as revealed in our present work, completely from the paroral membrane while not from the old scutica. As a conclusion, the stomatogenesis could be summarized as follows: firstly, the parental scutica proliferates and became the primordial field, which finally formed membranelle 3 of the opisthe. The secondary proliferated field, which derived from the zigzag configuration of parental paroral membrane, also developed in two parts, with the anterior part becoming the paroral membrane as well as scutica of the opisthe and the posterior part developing into membranelles 1 and 2 of the opisthe. The remnants of the parental paroral membrane gave rise to the paroral membrane and scutica of the proter.

  7. Description of two marine amphisiellid ciliates, Amphisiella milnei (Kahl, 1932) Horváth, 1950 and A. sinica sp. nov. (Ciliophora: Hypotrichia), with notes on their ontogenesis and SSU rDNA-based phylogeny.

    Science.gov (United States)

    Li, Liqiong; Zhao, Xiaolu; Ji, Daode; Hu, Xiaozhong; Al-Rasheid, Khaled A S; Al-Farraj, Saleh A; Song, Weibo

    2016-06-01

    The morphology and taxonomy of two marine Amphisiella species, isolated from mariculture waters in northern China, were investigated using standard techniques. One species corresponds well with the original description of the poorly known Amphisiella milnei (Kahl, 1932) Horváth, 1950 by remarkable characteristics, inter alia, (i) the additional cirri between the left frontal cirrus and the buccal cirrus, and (ii) ring-shaped structure in the anterior and posterior body portion (posterior one sometimes lacking). The detailed description of the cirral pattern and an informative ontogenetic stage first reveal that the additional cirri, which are uniformly absent in all congeners, originate from the frontal-ventral transverse cirral anlage I. The other species represents a new species of Amphisiella, A. sinica sp. nov. It is distinguished from its most closely related congener A. annulata (Kahl, 1928) Borror, 1972 by having numerous ring-shaped structures with a shallow brim more or less densely centralised at both ends of the body. Brief notes on the cell division and phylogenetic analyses based on small subunit (SSU) rRNA gene sequence for both organisms are also supplied in order to get further understanding of their systematic positions. The molecular information indicates that both organisms belong to two separate clades and confirms that the genus Amphisiella might be polyphyletic. PMID:27156119

  8. Protocruzia,a highly ambiguous ciliate(Protozoa;Ciliophora):Very likely an ancestral form for Heterotrichea,Colpodea or Spirotrichea? With reevaluation of its evolutionary position based on multigene analyses

    Institute of Scientific and Technical Information of China (English)

    Thorsten; STOECK; Shin; Mann; Kyoon; Al-Rasheid; Khaled; A.; S.; Al-Khedhairy; Abdulaziz; A.

    2010-01-01

    The ciliate genus Protocruzia belongs to one of the most ambiguous taxa considering its systematic position,possibly as a member of the classes Heterotrichea,Spirotrichea or Karyorelictea,which is tentatively placed into Spirotrichea in Lynn’s 2008 system.To test these hypotheses,multigene trees(Bayesian inference,evolutionary distance,maximum parsimony,and maximum likelihood) were constructed using the small subunit rRNA(SSU rRNA) gene,internal transcribed spacer 2(ITS2) and a protein coding gene(histone H4).All analyses agree that:(1) four morphotypes of Protocruzia from different geographical origins group together and form a monophyletic clade,which cannot be assigned to any of the eleven described ciliate classes;(2) it is invariably positioned on an isolated branch separated from the class Spirotrichea suggesting that this clade should be clearly removed from Spirotrichea;(3) this leads us to hypothesize that this taxon may indeed represent a lineage on a class rank.Based on the fact that it is,both morphologically and in molecular features,closely related to the heterotrichs,Colpodea and Oligohymenophorea,Protocruziida might be an ancestral form for the subphylum Intramacronucleata in the evolutionary line from the class Heterotrichea(subphylum Postciliodesmatophora) to higher taxa.

  9. Morphology and phylogenies of two hypotrichous brackish-water ciliates from China, Neourostylopsis orientalis n. sp. and Protogastrostyla sterkii (Wallengren, 1900) n. comb., with establishment of a new genus Neourostylopsis n. gen. (Protista, Ciliophora, Hypotrichia).

    Science.gov (United States)

    Chen, Xiangrui; Shao, Chen; Liu, Xihan; Huang, Jie; Al-Rasheid, Khaled A S

    2013-03-01

    This paper investigates the morphology, infraciliature and small-subunit (SSU) rRNA gene sequences of two hypotrichous ciliates, Neourostylopsis orientalis n. sp., and Protogastrostyla sterkii (Wallengren, 1900) n. comb. (basionym Gastrostyla sterkii), collected from coastal waters in southern China. Neourostylopsis orientalis n. sp. is diagnosed mainly by the arrangement of brownish cortical granules, the numbers of adoral membranelles and frontal and transverse cirri and the characteristics of its midventral cirral pairs. The SSU rRNA gene phylogeny strongly supports the establishment of the new genus Neourostylopsis n. gen., which is characterized mainly by the following features: frontal and transverse cirri clearly differentiated, buccal cirri present, two frontoterminal cirri, midventral complex composed of midventral pairs only and not exceeding the halfway point of the cell, more than one row of marginal cirri on each side which derive from individual anlagen within each parental row, caudal cirri lacking. Thus, two new combinations are required: Neourostylopsis songi (Lei et al., 2005) n. comb., and Neourostylopsis flavicana (Wang et al., 2011) n. comb. Additionally, improved diagnoses for both Metaurostylopsis and Apourostylopsis are supplied in this study. Protogastrostyla sterkii (Wallengren, 1900) n. comb. differs from the similar congener Protogastrostyla pulchra mainly in body shape, ratio of buccal field to body length in vivo and molecular data. Based on the present studies, we conclude that the estuarine population of P. pulchra collected by J. Gong and others [Gong et al., J Eukaryot Microbiol (2007) 54, 468-478] is a population of P. sterkii. PMID:23355699

  10. Morphology and small-subunit rRNA gene sequences of two novel marine ciliates, Metanophrys orientalis spec. nov. and Uronemella sinensis spec. nov. (Protista, Ciliophora, Scuticociliatia), with an improved diagnosis of the genus Uronemella.

    Science.gov (United States)

    Pan, Xuming; Zhu, Mingzhuang; Ma, Honggang; Al-Rasheid, Khaled A S; Hu, Xiaozhong

    2013-09-01

    The morphology and infraciliature of two novel marine scuticociliates, Metanophrys orientalis spec. nov. and Uronemella sinensis spec. nov., collected from sandy beaches at Qingdao, China, were investigated using live observation and protargol-staining methods. Metanophrys orientalis spec. nov. is distinguished by the following characteristics: marine habitat and a slender to elongate oval body with pointed anterior end and rounded caudal end, in vivo about 25-50 µm long; buccal field about a quarter to a third of body length; nine or ten somatic kineties with dikinetids approximately in anterior half of body, monokinetids in posterior half; membranelles 1 and 2 almost equal in length and composed of two and three longitudinal rows of kinetids respectively; paroral membrane with zigzag structure extending anteriorly to middle portion of membranelle 2; contractile vacuole pore located at posterior end of somatic kinety 1. The genus Uronemella is redefined as follows: marine form with an elongate-elliptical or inverted pear-shaped body; apical plate conspicuous; buccal field about two-thirds of body length, cytostome subequatorially located; oral apparatus Uronema-like; somatic kineties comprising a mixture of dikinetids and monokinetids. Uronemella sinensis spec. nov. is recognized by having an elongate-elliptical body with truncated apical frontal plate, size in vivo about 25-35 × 15-20 µm, nine or ten somatic kineties, membranelle 1 consisting of two or three basal bodies, contractile vacuole pore at posterior end of somatic kinety 1. This study also compared the small-subunit rRNA gene sequences of these two species with other closely related species to show the sequence divergence, which ranged from 3.53 to 9.60%. Phylogenetic analyses support the contention that the genus Uronemella is monophyletic, while Metanophrys is non-monophyletic. PMID:23859947

  11. Reconsideration of systematic relationships within the order Euplotida (Protista, Ciliophora) using new sequences of the gene coding for small-subunit rRNA and testing the use of combined data sets to construct phylogenies of the Diophrys-complex.

    Science.gov (United States)

    Yi, Zhenzhen; Song, Weibo; Clamp, John C; Chen, Zigui; Gao, Shan; Zhang, Qianqian

    2009-03-01

    Comprehensive molecular analyses of phylogenetic relationships within euplotid ciliates are relatively rare, and the relationships among some families remain questionable. We performed phylogenetic analyses of the order Euplotida based on new sequences of the gene coding for small-subunit RNA (SSrRNA) from a variety of taxa across the entire order as well as sequences from some of these taxa of other genes (ITS1-5.8S-ITS2 region and histone H4) that have not been included in previous analyses. Phylogenetic trees based on SSrRNA gene sequences constructed with four different methods had a consistent branching pattern that included the following features: (1) the "typical" euplotids comprised a paraphyletic assemblage composed of two divergent clades (family Uronychiidae and families Euplotidae-Certesiidae-Aspidiscidae-Gastrocirrhidae), (2) in the family Uronychiidae, the genera Uronychia and Paradiophrys formed a clearly outlined, well-supported clade that seemed to be rather divergent from Diophrys and Diophryopsis, suggesting that the Diophrys-complex may have had a longer and more separate evolutionary history than previously supposed, (3) inclusion of 12 new SSrRNA sequences in analyses of Euplotidae revealed two new clades of species within the family and cast additional doubt on the present classification of genera within the family, and (4) the intraspecific divergence among five species of Aspidisca was far greater than those of closely related genera. The ITS1-5.8S-ITS2 coding regions and partial histone H4 genes of six morphospecies in the Diophrys-complex were sequenced along with their SSrRNA genes and used to compare phylogenies constructed from single data sets to those constructed from combined sets. Results indicated that combined analyses could be used to construct more reliable, less ambiguous phylogenies of complex groups like the order Euplotida, because they provide a greater amount and diversity of information. PMID:19121402

  12. Caryotricha minuta (Xu et al., 2008) nov. comb., a unique marine ciliate (Protista, Ciliophora, Spirotrichea), with phylogenetic analysis of the ambiguous genus Caryotricha inferred from the small-subunit rRNA gene sequence.

    Science.gov (United States)

    Miao, Miao; Shao, Chen; Jiang, Jiamei; Li, Liqiong; Stoeck, Thorsten; Song, Weibo

    2009-02-01

    A population of Kiitricha minuta Xu et al., 2008, a small kiitrichid ciliate, was isolated from a brackish water sample in Jiaozhou Bay, Qingdao, northern China. After comparison of its morphology and infraciliature, it is believed that this morphotype should be assigned to the genus Caryotricha; hence, a new combination is suggested, Caryotricha minuta (Xu et al., 2008) nov. comb. The small-subunit (SSU) rRNA gene sequence was determined in order to elucidate the phylogenetic position of this poorly known, ambiguous genus. The organism can be clearly separated from its congener, Caryotricha convexa Kahl, 1932, by the extremely shortened ventral cirral rows in the posterior ends. Based on the data available, an improved diagnosis is given for the genus: marine Kiitrichidae with prominent buccal field; two highly developed undulating membranes; non-grouped, uniform cirral rows on both ventral and dorsal sides; enlarged transverse cirri present, which are the only differentiated cirri; marginal cirri not present; one short migratory row located posterior to buccal field; structure of dorsal kineties generally in Kiitricha pattern. The sequence of the SSU rRNA gene of C. minuta differs by 13 % from that of Kiitricha marina. Molecular phylogenetic analyses (Bayesian inference, least squares, neighbour joining, maximum parsimony) indicate that Caryotricha, together with Kiitricha, diverges at a deep level from all other spirotrichs. Its branching position is between Phacodiniidia and Licnophoridia. The results strongly support the distinct separation of the Kiitricha-Caryotricha clade, which always branches basal to the Stichotrichia-Hypotrichia-Oligotrichia-Choreotrichia assemblage. These results also confirm the previous hypothesis that the Kiitricha-Caryotricha group, long assumed to be a close relation to the euplotids, represents a taxon at subclass level within the spirotrichs. PMID:19196791

  13. Description of Eurystomatella sinica n. gen., n. sp., with establishment of a new family Eurystomatellidae n. fam. (Protista, Ciliophora, Scuticociliatia) and analyses of its phylogeny inferred from sequences of the small-subunit rRNA gene.

    Science.gov (United States)

    Miao, Miao; Wang, Yangang; Song, Weibo; Clamp, John C; Al-Rasheid, Khaled A S

    2010-02-01

    Recently, an undescribed marine ciliate was isolated from China. Investigation of its morphology and infraciliature revealed it as an undescribed species representing a new genus, Eurystomatella n. gen., the type of the new family Eurystomatellidae n. fam. The new family is defined by close-set, apically positioned oral membranelles and a dominant buccal field that is surrounded by an almost completely circular paroral membrane. The new genus is defined by having a small oral membranelle 1 (M1), bipartite M2 and well-developed M3, a body surface faintly sculptured with a silverline system in a quadrangular, reticulate pattern and a cytostome located at the anterior third of a large buccal field. The type species of the new genus, Eurystomatella sinica n. sp., is a morphologically unique form that is defined mainly by the combination of a conspicuously flattened body, several caudal cilia, extremely long cilia associated with the buccal apparatus and a contractile vacuole located subcaudally. According to phylogenetic analyses of small-subunit (SSU) rRNA gene sequences, Eurystomatella clusters with the genus Cyclidium, as a sister group to the family Pleuronematidae. The great divergence in both buccal and somatic ciliature between Eurystomatella and all other known scuticociliates supports the establishment of a new family for Eurystomatella. PMID:19651734

  14. Simbiontes associados com Anomalocardia brasiliana (Gmelin (Mollusca, Bivalvia, Veneridae na Ilha de Santa Catarina e região continental adjacente, Santa Catarina, Brasil Symbionts associated with Anomalocardia brasiliana (Gmelin (Mollusca, Bivalvia, Veneridae on Santa Catarina Island and adjacent continental region, Santa Catarina, Brazil

    Directory of Open Access Journals (Sweden)

    Guisla Boehs

    2004-12-01

    Full Text Available Berbigões, Anomalocardia brasiliana (Gmelin, 1791, de bancos naturais da Ilha de Santa Catarina e região continental adjacente (SC, Brasil, foram examinados quanto a presença de simbiontes. Holothuriophilus tomentosus (Ortmann, 1894 (Brachyura, Sphenia antillensis Dall & Simpson, 1901 (Bivalvia e poliquetos espionídeos (Polychaeta foram observados macroscopicamente. A análise das secções histológicas evidenciou esporocistos de trematódeos (Digenea, um metacestóide (Cestoda e dois ciliados (Ciliophora.Pointed venus, Anomalocardia brasiliana (Gmelin, 1791, from natural beds of Santa Catarina Island and adjacent continental region (SE Brazil were examined in respect of symbiotic associations. Holothuriophilus tomentosus (Ortmann, 1894 (Brachyura, Sphenia antillensis Dall & Simpson, 1901 (Bivalvia, and polychaete worms (Polychaeta were found by macroscopic diagnosis. By analysis of histological sections, it was noted trematode sporocysts (Digenea, a metacestode (Cestoda and two ciliates (Ciliophora.

  15. Haematological characteristics associated with parasitism in bream, Abramis brama orientalis

    OpenAIRE

    Hayatbakhsh, Mohammad Reza; Khara, Hossein; Movahed, Rashideh; Sayadborani, Mohammad; Rohi, Javad Daghigh; Ahmadnezhad, Mohadesseh; Rahbar, Mina; Rad, Amir Sajedi

    2013-01-01

    A parasitological investigation was done on 175 specimens. Infections of A. brama orientalis were analyzed according to the age and sex. The fish also were examined for evaluation changes of haematological parameters in relation to parasitic infection. Four parasites were found, including—Caryophyllaeus laticeps and Ligula intestinalis (Cestoda), Diplostomum spathaceum (Platyhelminthes) and Trichodina sp. (Ciliophora). Among identified parasites maximum prevalence and mean intensity were rela...

  16. Fauna parasitária de tambaqui Colossoma macropomum (Characidae) cultivado em tanque-rede no estado do Amapá, Amazônia oriental Parasitic fauna of tambaqui Colossoma macropomum(Characidae) farmed in cages in the State of Amapá, eastern Amazon

    OpenAIRE

    Evandro Freitas Santos; Marcos Tavares-Dias; Douglas Anadias Pinheiro; Ligia Rigôr Neves; Renata das Graças Barbosa Marinho; Márcia Kelly Reis Dias

    2013-01-01

    O objetivo principal deste trabalho foi estudar a parasitofauna e a relação hospedeiro- parasito em tambaqui Colossoma macropomum cultivados em tanques-rede no Rio Matapi, município de Santana, estado do Amapá, região da Amazônia oriental, Brasil. Foram examinados 60 tambaquis, dos quais 96,7% estavam parasitados por protozoários Ichthyophthirius multifiliis (Ciliophora) e Piscinoodinium pillulare (Dinoflagellida), monogenoideas Mymarotheciun boegeri e Anacanthorus spathulatus (Dactylogyridae...

  17. Evolutionary origin of Plasmodium and other Apicomplexa based on rRNA genes.

    OpenAIRE

    Escalante, A.A.; Ayala, F J

    1995-01-01

    We have explored the evolutionary history of the Apicomplexa and two related protistan phyla, Dinozoa and Ciliophora, by comparing the nucleotide sequences of small subunit ribosomal RNA genes. We conclude that the Plasmodium lineage, to which the malarial parasites belong, diverged from other apicomplexan lineages (piroplasmids and coccidians) several hundred million years ago, perhaps even before the Cambrian. The Plasmodium radiation, which gave rise to several species parasitic to humans,...

  18. Diversity in a hidden world: potential and limitation of next-generation sequencing for surveys of molecular diversity of eukaryotic microorganisms

    OpenAIRE

    MEDINGER, RALPH; Nolte, Viola; Pandey, Ram Vinay; Jost, Steffen; OTTENWÄLDER, BIRGIT; Schlötterer, Christian; BOENIGK, JENS

    2010-01-01

    With the delivery of millions of sequence reads in a single experiment, next-generation sequencing (NGS) is currently revolutionizing surveys of microorganism diversity. In particular, when applied to Eukaryotes, we are still lacking a rigorous comparison of morphological and NGS-based diversity estimates. In this report, we studied the diversity and the seasonal community turnover of alveolates (Ciliophora and Dinophyceae) in an oligotrophic freshwater lake by SSU amplicon sequencing with NG...

  19. Plankton Resting Stages in the Marine Sediments of the Bay of Vlorë (Albania)

    OpenAIRE

    Fernando Rubino; Salvatore Moscatello; Manuela Belmonte; Gianmarco Ingrosso; Genuario Belmonte

    2013-01-01

    In the frame of the INTERREG III CISM project, sediment cores were collected at 2 stations in the Gulf of Vlorë to study the plankton resting stage assemblages. A total of 87 morphotypes were identified and produced by Dinophyta, Ciliophora, Rotifera, and Crustacea. In 22 cases, the cyst belonged to a species absent from the plankton of the same period. The most abundant resting stages were those produced by Scrippsiella species (Dinophyta). Some calcareous cysts were identified as fossil spe...

  20. Dispersal of the parasitic ciliate Lambornella clarki: implications for ciliates in the biological control of mosquitoes.

    OpenAIRE

    Egerter, D E; Anderson, J R; Washburn, J O

    1986-01-01

    Lambornella clarki (Ciliophora: Tetrahymenidae), an endoparasite of Aedes sierrensis (Diptera: Culicidae), is dispersed by infected adult mosquitoes. Invasion of the ovaries induces parasitically castrated females to exhibit oviposition behavior and thereby actively disperse ciliates through deposition into water. Oviposition behavior of infected females is prolonged and mimics that of normal gravid females in their first gonotropic cycle. Adults of both sexes also passively disperse ciliates...

  1. Parasitic fauna of eight species of ornamental freshwater fish species from the middle Negro River in the Brazilian Amazon Region Fauna parasitária de oito espécies de peixes ornamentais de água doce do médio Rio Negro na Amazônia brasileira

    Directory of Open Access Journals (Sweden)

    Marcos Tavares-Dias

    2010-06-01

    Full Text Available Twenty-seven specimens of cardinal tetra Paracheirodon axelrodi, 33 rosy tetra Hyphessobrycon copelandi (Characidae, 28 marbled hatchetfish Carnegiella strigata, 26 blackwing hatchetfish Carnegiella martae (Gasteropelecidae, 27 bodó Ancistrus hoplogenys (Loricariidae, 31 brown pencilfish Nannostomus eques, 38 oneline pencilfish Nannostomus unifasciatus (Lebiasinidae and 13 angelfish Pterophyllum scalare (Cichlidae were collected from the middle Negro River, State of Amazonas, Brazil, for parasitological studies. Out of the total of 223 fish examined, 143 (64.1% were parasitized by at least one parasite species. The highest prevalence rate was for Monogenea (36.7%, followed by Ichthyophthirius multifiliis (Ciliophora (20.6%, Trichodina spp. (Ciliophora (4.0%, Piscinoodinium pillulare (Dinoflagellida (1.3%, Tetrahymena sp. (Ciliophora (0.89%, and Procamallanus sp. (Nematoda (0.4%. All eight fish species had Monogenea (Gyrodactylidae and Dactylogyridae in the gills, but the highest prevalence occurred in P. scalare and the lowest in P. axelrodi and C. strigata. However, the highest mean intensity of Monogenea was found in P. scalare and A. hoplogenys. The protozoan I. multifiliis occurred in the six ornamental fish species examined, but C. strigata and C. martae had higher prevalence and mean intensity. Trichodina spp. were found only in the gills of C. strigata, C. martae and N. eques, and with higher mean intensity in C. strigata. On the other hand, the protozoan P. pilullare was found only in the gills of C. martae. This is the first report of Tetrahymena sp. in Brazil, and it occurred in the gills of C. strigata.Para estudos parasitológicos, 27 espécimes de cardinal Paracheirodon axelrodi, 33 rosa-céu Hyphessobrycon copelandi (Characidae, 28 peixes borboleta Carnegiella strigata e 26 Carnegiella martae (Gasteropelecidae, 27 bodó ou cascudo Ancistrus hoplogenys (Loricariidae, 31 peixes-lápis Nannostomus eques e 38 Nannostomus unifasciatus

  2. Parasitofauna de cachara cultivado em tanque-rede no rio Paraguai

    OpenAIRE

    2013-01-01

    O objetivo deste trabalho foi descrever a fauna parasitária de cachara (Pseudoplatystoma reticulatum) cultivado em tanque-rede, no rio Paraguai. Dez peixes com peso médio de 598,0±81,3 g e comprimento total médio de 38,6±1,6 cm foram examinados. Todos os peixes necropsiados apresentaram infestação por pelo menos duas espécies de parasitos. Entre os parasitos, foram encontrados Ichthyophthirius multifiliis (Ciliophora), Myxobolus sp. e Henneguya sp. (Myxozoa), Monogenoidea, Choanoscolex abscis...

  3. ASPECTOS ECOLÓGICOS DA COMUNIDADE DE PARASITOS EMDUAS ESPÉCIES DE LORICARIIDAE DA BACIA IGARAPÉ FORTALEZA, ESTADO DO AMAPÁ, BRASIL

    OpenAIRE

    Raissa Alves Gonçalves; Marcos Sidney Brito de Oliveira; Evandro Freitas Santos; Marcos Tavares-Dias

    2014-01-01

    Os parasitos têm sido reconhecidos como importantes componentes dos ecossistemas. Esses usam o ambiente para a sua transmissão e podem infectar diversas espécies de peixe no ecossistema. O presente estudo investigou a ecologia parasitária em Squaliforma emarginata e Harttia duriventris da bacia Igarapé Fortaleza, região de Macapá, estado do Amapá, Norte do Brasil. Para ambos os peixes houve similar nível de infecção por Ichthyophthirius multifiliis (Ciliophora), parasito dominante e com dispe...

  4. Microscopia eletrônica de varredura de parasitos branquiais de Piaractus mesopotamicus Holmberg, 1887 cultivados no Estado de São Paulo, Brasil Scanning electron microscopy of the gill parasites of cultivated Piaractus mesopotamicus Holmberg, 1887 in the State of São Paulo, Brazil

    Directory of Open Access Journals (Sweden)

    Maurício Laterça Martins

    2000-05-01

    Full Text Available Foram coletados 15 exemplares de Piaractus mesopotamicus (pacu, medindo em torno de 15 cm de comprimento padrão, de tanques do Centro de Aqüicultura da Unesp, Jaboticabal, SP, Brasil. Os peixes foram mantidos em aquários de 350 litros para posterior sacrifício com MS-222. Os filamentos brânquiais foram fixados em glutaraldeído a 3% para a microscopia eletrônica de varredura. Foram observados espécimes de Trichodina sp (Ciliophora, Henneguya piaractus (Myxozoa, e Anacanthorus penilabiatus (Monogenea, atacando o epitélio branquial. Neste trabalho, foram reportados a morfologia externa dos parasitos e as alterações no epitélio branquial dos peixes parasitadosFifteen specimens of Piaractus mesopotamicus (pacu, measuring 15 cm standard length, were collected from a fishpond at Aquaculture Center of Unesp, Jaboticabal, SP, Brazil. Fishes were maintained in 350 L aquariums for a further sacrifice with MS-222. For the Scanning Electron Microscopy, gill filaments were fixed in 3% glutaraldehyde. Specimens of Trichodina sp (Ciliophora, Henneguya piaractus (Myxozoa and Anacanthorus penilabiatus (Monogenea attacking on the gill epithelium were observed. In the present paper, the external morphology of parasites and the alterations in the gill epithelium of parasitized fishes were reported

  5. Parasitofauna de cachara cultivado em tanque-rede no rio Paraguai

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    Gabriela Tomas Jeronimo

    2013-08-01

    Full Text Available O objetivo deste trabalho foi descrever a fauna parasitária de cachara (Pseudoplatystoma reticulatum cultivado em tanque-rede, no rio Paraguai. Dez peixes com peso médio de 598,0±81,3 g e comprimento total médio de 38,6±1,6 cm foram examinados. Todos os peixes necropsiados apresentaram infestação por pelo menos duas espécies de parasitos. Entre os parasitos, foram encontrados Ichthyophthirius multifiliis (Ciliophora, Myxobolus sp. e Henneguya sp. (Myxozoa, Monogenoidea, Choanoscolex abscissus e Nominoscolex sudobim (Cestoda, Dolops carvalhoi (Crustacea e Digenea. O protozoário Ichthyophthirius multifiliis foi o parasito com maior prevalência.

  6. Assessment of the stress induced by decays within a system of intensive rearing of the Asian cyprinids

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    Maria D. Dicu

    2011-04-01

    Full Text Available t. In intensive fish farming systems in the recent years, under the multiplication of stressor factors, there is a trend of gradual increase in pathological disease whose etiologic agents are not appreciated at their real pathogenic value by fish farmers. Technological performance in classical aquaculture depends largely on the efficiency of disease control as well as stressful conditions. The subject of this paper was aimed at reducing losses in intensive aquaculture by applying efficient prophylactic and therapeuticmeasures, a good knowledge of parasitological diseases, their length, intensity degree and also the influence on the fish population being necessary. For these reasons, a complete ichtyopathological examination was done in the case of Asian cyprinid species, during 2007-2008 in the Carja 1 (Vaslui County, Romania farm conditions, identifying the following parasitofauna: protozoa (ciliophora, plathelminthes worms (monogenea and trematoda and crustaceans.

  7. Diversity and distribution of parasites from potentially cultured freshwater fish in Nakhon Si Thammarat

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    Supamattaya, K.

    2005-02-01

    Full Text Available Twenty-one species from 16 genera of potentially cultured freshwater fish were examined for external and internal parasites. Ten individuals of each fish species were sampled from various places in Nakhon Si Thammarat. Eight groups, 72 species were identified and the majority was external (52 spp.. The parasites found were ciliated protozoan (2 spp., myxozoan (2 spp., monogenean (44 spp., digenean (7 spp., cestode (6 spp., nematode (6 spp., acanthocephalan (2 spp. and crustacean (3 spp.. Monogenean was regarded as a major group of parasites with 44 species. Dactylogyrus (Monogenea had the highest number of species (12 spp., whereas Trichodina pediculus (Ciliophora was the most widely distributed species observed from at least 7 fish species (7 families. Most of the parasites (72 % found in this study were specific to their host species.

  8. Fauna parasitária de tambaqui Colossoma macropomum (Characidae cultivado em tanque-rede no estado do Amapá, Amazônia oriental Parasitic fauna of tambaqui Colossoma macropomum(Characidae farmed in cages in the State of Amapá, eastern Amazon

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    Evandro Freitas Santos

    2013-03-01

    Full Text Available O objetivo principal deste trabalho foi estudar a parasitofauna e a relação hospedeiro- parasito em tambaqui Colossoma macropomum cultivados em tanques-rede no Rio Matapi, município de Santana, estado do Amapá, região da Amazônia oriental, Brasil. Foram examinados 60 tambaquis, dos quais 96,7% estavam parasitados por protozoários Ichthyophthirius multifiliis (Ciliophora e Piscinoodinium pillulare (Dinoflagellida, monogenoideas Mymarotheciun boegeri e Anacanthorus spathulatus (Dactylogyridae e sanguessugas Glossiiphonidae gen. sp. (Hirudinea. Os maiores níveis de parasitismo foram causados por protozoários I. multifiliis e P. pillulare e os menores por sanguessugas Glossiiphonidae gen. sp. Porém, os índices de infestação não tiveram efeitos na saúde dos peixes hospedeiros, uma vez que o fator de condição relativo (Kn não foi estatisticamente (pThe purpose of this paper was to evaluate the parasitic fauna and the host-parasite relationship in Colossoma macropomum farmed in cages of Matapi River, municipally of Santana, State of Amapá, in eastern Amazon, Brazil. Of 60 specimens of tambaqui examined, 96.7% were parasitized by protozoans Ichthyophthirius multifiliis (Ciliophora and Piscinoodinium pillulare (Dinoflagellida, monogenoideans Mymarotheciun boegeri and Anacanthorus spathulatus (Dactylogyridae, and leeches Glossiphoniidae gen. sp. (Hirudinea. The higher infestation levels were caused by protozoans I. multifiliis and P. pillulare, while the lower infestation levels were caused by leeches. No effects of parasitic infestation rates on fish health were observed. The relative condition factor (Kn was not correlated with the intensity of parasites found. This was the first record of I. multifiliis and P. pillulare in C. macropomum farmed in cages in the Brazilian Amazon.

  9. Haematological characteristics associated with parasitism in bream, Abramis brama orientalis.

    Science.gov (United States)

    Hayatbakhsh, Mohammad Reza; Khara, Hossein; Movahed, Rashideh; Sayadborani, Mohammad; Rohi, Javad Daghigh; Ahmadnezhad, Mohadesseh; Rahbar, Mina; Rad, Amir Sajedi

    2014-12-01

    A parasitological investigation was done on 175 specimens. Infections of A. brama orientalis were analyzed according to the age and sex. The fish also were examined for evaluation changes of haematological parameters in relation to parasitic infection. Four parasites were found, including-Caryophyllaeus laticeps and Ligula intestinalis (Cestoda), Diplostomum spathaceum (Platyhelminthes) and Trichodina sp. (Ciliophora). Among identified parasites maximum prevalence and mean intensity were related to Ligula intestinalis and Caryophyllaeus laticeps respectively. The values of prevalence and mean intensity showed significant differences among ages. Our results revealed prevalence, mean intensity and abundance had not significant difference between males and females. Parasite infection provoked reduction (P < 0.05) in haematocrit, mean cell volume and lymphocyte. On the other hand, significant increase (P < 0.05) in white blood cell (WBC), mean cell haemoglobin concentration and neutrophil in blood of infected fish was observed. Significant differences were detected for the WBC, lymphocyte and neutrophil (infected versus uninfected by Trichodina sp., Diplostomum spathaceum and Caryophyllaeus laticeps). In addition to WBC and lymphocytes, significant change was observed for the haemoglobin (Hb) (infected versus uninfected by Ligula intestinalis). PMID:25320488

  10. Parasites in Curimata cyprinoides (Characiformes: Curimatidae from eastern Amazon, Brazil - doi: 10.4025/actascibiolsci.v35i4.19649

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    Marcos Tavares-Dias

    2013-07-01

    Full Text Available This work is the first study on parasitic fauna of Curimata cyprinoides Linnaeus, 1766 (Curimatidae and the host-parasite relationship. The total of 154,740 parasites such as Ichthyophthirius multifiliis (Ciliophora, trophozoite of Spironucleus sp. (Hexamitidae, Urocleidoides sp. (Monogenoidea, Digenea gen. sp. and Polymorphus sp. (Polymorphidae were collected. The component community showed low diversity (HB = 0.004 ± 0.020 and parasite species richness (1.4 ± 0.6. However, I. multifiliis and Urocleidoides sp. were prevalent and with higher intensity on the host population and also aggregated the distribution pattern. The occurrence of these ectoparasites in C. cyprinoides may be a consequence of its alimentary diet. Positive correlation between the abundance and size of I. multifiliis and the relative condition factor of the host were observed and discussed. These data represent increased knowledge of the biology of these parasites. Furthermore, this study expanded the geographic distribution of some parasite species for this new host from Brazil.

  11. Extracellular DNA amplicon sequencing reveals high levels of benthic eukaryotic diversity in the central Red Sea

    KAUST Repository

    Pearman, John K.

    2015-11-01

    The present study aims to characterize the benthic eukaryotic biodiversity patterns at a coarse taxonomic level in three areas of the central Red Sea (a lagoon, an offshore area in Thuwal and a shallow coastal area near Jeddah) based on extracellular DNA. High-throughput amplicon sequencing targeting the V9 region of the 18S rRNA gene was undertaken for 32 sediment samples. High levels of alpha-diversity were detected with 16,089 operational taxonomic units (OTUs) being identified. The majority of the OTUs were assigned to Metazoa (29.2%), Alveolata (22.4%) and Stramenopiles (17.8%). Stramenopiles (Diatomea) and Alveolata (Ciliophora) were frequent in a lagoon and in shallower coastal stations, whereas metazoans (Arthropoda: Maxillopoda) were dominant in deeper offshore stations. Only 24.6% of total OTUs were shared among all areas. Beta-diversity was generally lower between the lagoon and Jeddah (nearshore) than between either of those and the offshore area, suggesting a nearshore–offshore biodiversity gradient. The current approach allowed for a broad-range of benthic eukaryotic biodiversity to be analysed with significantly less labour than would be required by other traditional taxonomic approaches. Our findings suggest that next generation sequencing techniques have the potential to provide a fast and standardised screening of benthic biodiversity at large spatial and temporal scales.

  12. Risk assessment for parasites in cultures of Diplodus puntazzo (Sparidae) in the Western Mediterranean: prospects of cross infection with Sparus aurata.

    Science.gov (United States)

    Sánchez-García, Neus; Raga, Juan Antonio; Montero, Francisco E

    2014-08-29

    The sharpsnout seabream Diplodus puntazzo is of interest in Mediterranean fish farming. Disease is an important problem because parasites can spread quickly in culture conditions and fish often develop high parasite burdens. Here we assess the risk that documented parasites pose to the sustainability of D. puntazzo farming. This study specifically considers metazoan and protist parasites recorded from wild and farmed D. puntazzo in scientific literature. Risk assessment studies involve the identification, characterization and qualitative quantification of the risk in question (parasitoses in this case) and the probability of establishment. We considered the parasite species which may be difficult to manage as a priority for research into potential management strategies. Those parasites which could be transmitted from cultures of gilthead seabream (Sparus aurata) were also included in this study. Four groups of parasites represented a risk to D. puntazzo farming, ranging from moderate to high: Ciliophora, Myxozoa, Monogenea and Copepoda. Three parasite species were considered high risk to D. puntazzo cultures: Amyloodinium sp., Cryptocaryon sp. and Enteromyxum leei. These species were responsible for high mortalities in cultures of these and other fish species. In addition Sparicotyle chrysophrii, Caligus ligusticus and Gnathia vorax entail a moderate risk to D. puntazzo Mediterranean farms. No important episodes have been related to caligids and isopods in Mediterranean sparids, nevertheless they should be properly managed to prevent future problems. PMID:24893693

  13. Parasitic fauna in hybrid tambacu from fish farms

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    Ronilson Macedo Silva

    2013-08-01

    Full Text Available The objective of this work was to evaluate the parasitic fauna of hybrid tambacu (Colossoma macropomum x Piaractus mesopotamicus from fish farms and the host-parasite relationship. A hundred and fourteen fish were collected from four fish farms in Macapá, in the state of Amapá, Brazil, 80.7% of which were infected by: Ichthyophthirius multifiliis (Ciliophora; Piscinoodinium pillulare (Dinoflagellida; Anacanthorus spatulatus, Notozothecium janauachensis, and Mymarothecium viatorum (Monogenoidea; Neoechinorhynchus buttnerae (Acanthocephala; Cucullanus colossomi (Nematoda; Perulernaea gamitanae (Lernaeidae; and Proteocephalidae larvae (Cestoda. A total of 8,136,252 parasites were collected from the examined fish. This is the first record of N. buttnerae, C. colossomi, N. janauachensis, M. viatorum, and Proteocephalidae for hybrid tambacu in Brazil. Ichthyophthirius multifiliis was the most prevalent parasite, whereas endohelminths were the less. A positive correlation was observed between number of I. multifiliis and total length and weight of fish, as well as between number of P. gamitanae and total length. The infection by I. multifiliis had association with the parasitism by Monogenoidea. Low water quality contributes to high parasitism of hybrid tambacu by ectoparasites, which, however, does not influence the relative condition factor of fish.

  14. Norwegian deep-water coral reefs: cultivation and molecular analysis of planktonic microbial communities.

    Science.gov (United States)

    Jensen, Sigmund; Lynch, Michael D J; Ray, Jessica L; Neufeld, Josh D; Hovland, Martin

    2015-10-01

    Deep-sea coral reefs do not receive sunlight and depend on plankton. Little is known about the plankton composition at such reefs, even though they constitute habitats for many invertebrates and fish. We investigated plankton communities from three reefs at 260-350 m depth at hydrocarbon fields off the mid-Norwegian coast using a combination of cultivation and small subunit (SSU) rRNA gene and transcript sequencing. Eight months incubations of a reef water sample with minimal medium, supplemented with carbon dioxide and gaseous alkanes at in situ-like conditions, enabled isolation of mostly Alphaproteobacteria (Sulfitobacter, Loktanella), Gammaproteobacteria (Colwellia) and Flavobacteria (Polaribacter). The relative abundance of isolates in the original sample ranged from ∼ 0.01% to 0.80%. Comparisons of bacterial SSU sequences from filtered plankton of reef and non-reef control samples indicated high abundance and metabolic activity of primarily Alphaproteobacteria (SAR11 Ia), Gammaproteobacteria (ARCTIC96BD-19), but also of Deltaproteobacteria (Nitrospina, SAR324). Eukaryote SSU sequences indicated metabolically active microalgae and animals, including codfish, at the reef sites. The plankton community composition varied between reefs and differed between DNA and RNA assessments. Over 5000 operational taxonomic units were detected, some indicators of reef sites (e.g. Flavobacteria, Cercozoa, Demospongiae) and some more active at reef sites (e.g. Gammaproteobacteria, Ciliophora, Copepoda). PMID:24911121

  15. The effects of different fertilizers on the ciliate communities of forests

    International Nuclear Information System (INIS)

    The influence of lime, mineral fertilizers and different composts on the ciliate communities (Protozoa: Ciliophora) of very acidified spruce forests were tested. In succession culture experiments species range, total numbers, abundance and dominance structure of the ciliate communities showed continued changes over a 90 day period. This method offers the opportunity not only to diagnose, but also to quantify effects of soil treatments. Investigations at the ARINUS-site Schluchsee (Black Forest) showed the following results: Liming led to a greater change in the ciliate communities than fertilization with magnesium-sulphate and ammonia-sulphate. Liming and treatment with compost, made from household garbage, and compost, made from chopped wood on the Beimerstetten site (Swabian Alb) led also to remarkably changes in the ciliate communities. The total ciliate numbers of the household garbage area were very low. In contrast, the ciliate community of the chopped wood compost areas were characterized by a great species number and high abundances of spirotrichuous ciliates, especially Halteria grandinella. (orig./UWA)

  16. Depth shapes α- and β-diversities of microbial eukaryotes in surficial sediments of coastal ecosystems.

    Science.gov (United States)

    Gong, Jun; Shi, Fei; Ma, Bin; Dong, Jun; Pachiadaki, Maria; Zhang, Xiaoli; Edgcomb, Virginia P

    2015-10-01

    Little is known about the relative influence of historic processes and environmental gradients on shaping the diversity of single-celled eukaryotes in marine benthos. By combining pyrosequencing of 18S ribosomal RNA genes with data on multiple environmental factors, we investigated the diversity of microeukaryotes in surficial sediments of three basins of the Yellow Sea Large Marine Ecosystem. A considerable proportion (about 20%) of reads was affiliated with known parasitoid protists. Dinophyta and Ciliophora appeared dominant in terms of relative proportion of reads and operational taxonomic unit (OTU) richness. Overall, OTU richness of benthic microeukaryotes decreased with increasing water depth and decreasing pH. While community composition was significantly different among basins, partial Mantel tests indicated a depth-decay pattern of community similarity, whereby water depth, rather than geographic distance or environment, shaped β-diversity of benthic microeukaryotes (including both the abundant and the rare biosphere) on a regional scale. Similar hydrographic and mineralogical factors contributed to the biogeography of both the abundant and the rare OTUs. The trace metal vanadium had a significant effect on the biogeography of the rare biosphere. Our study sheds new light on the composition, diversity patterns and underlying mechanisms of single-celled eukaryote distribution in surficial sediments of coastal oceans. PMID:25581721

  17. Plankton Resting Stages in the Marine Sediments of the Bay of Vlorë (Albania

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    Fernando Rubino

    2013-01-01

    Full Text Available In the frame of the INTERREG III CISM project, sediment cores were collected at 2 stations in the Gulf of Vlorë to study the plankton resting stage assemblages. A total of 87 morphotypes were identified and produced by Dinophyta, Ciliophora, Rotifera, and Crustacea. In 22 cases, the cyst belonged to a species absent from the plankton of the same period. The most abundant resting stages were those produced by Scrippsiella species (Dinophyta. Some calcareous cysts were identified as fossil species associated with Pleistocene to Pliocene sediment, although they were also found in surface sediments and some of them successfully germinated, thus proving their modern status. Total abundance generally decreased with sediment depth at station 40, while station 45 showed distinct maxima at 3 and 8 cm below the sediment surface. The depth of peak abundance in the sediment varied with species. This paper presents the first study of the plankton resting stages in the Bay of Vlorë. The study confirmed the utility of this type of investigation for a more correct evaluation of species diversity. In addition, the varying distribution with sediment depth suggests that this field could be of some importance in determining the history of species assemblages.

  18. Diversity and dynamics of active microbial eukaryotes in the anoxic zone of a freshwater meromictic lake (Pavin, France

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    CECILE eLEPERE

    2016-02-01

    Full Text Available Microbial eukaryotes play a crucial role in ecosystem functioning and oxygen is considered to be one of the strongest barriers against their local dispersal. However, diversity of microbial eukaryotes in freshwater habitats with oxygen gradients has previously received very little attention. We applied high-throughput sequencing (V4 region of the 18S rRNA gene in conjunction with quantitative PCR (DNA and RNA and fluorescent in situ hybridization analyses, to provide an unique spatio-temporal analysis of microbial eukaryotes diversity and potential activity in a meromictic freshwater lake (lake Pavin. This study revealed a high genetic diversity of unicellular eukaryotes in the permanent anoxic zone of lake Pavin and allowed the discrimination of active vs. inactive components. 42 % of the OTUs (Operational taxonomic Units are exclusively present in the monimolimnion, where Alveolata (Ciliophora and Dinophyceae and Fungi (Dikarya and Chytrids are the most active phyla and are probably represented by species capable of anaerobic metabolism. Pigmented eukaryotes (Haptophyceae and Chlorophyceae are also present and active in this zone, which opens up questions regarding their metabolism.

  19. Extracellular DNA amplicon sequencing reveals high levels of benthic eukaryotic diversity in the central Red Sea.

    Science.gov (United States)

    Pearman, John K; Irigoien, Xabier; Carvalho, Susana

    2016-04-01

    The present study aims to characterize the benthic eukaryotic biodiversity patterns at a coarse taxonomic level in three areas of the central Red Sea (a lagoon, an offshore area in Thuwal and a shallow coastal area near Jeddah) based on extracellular DNA. High-throughput amplicon sequencing targeting the V9 region of the 18S rRNA gene was undertaken for 32 sediment samples. High levels of alpha-diversity were detected with 16,089 operational taxonomic units (OTUs) being identified. The majority of the OTUs were assigned to Metazoa (29.2%), Alveolata (22.4%) and Stramenopiles (17.8%). Stramenopiles (Diatomea) and Alveolata (Ciliophora) were frequent in a lagoon and in shallower coastal stations, whereas metazoans (Arthropoda: Maxillopoda) were dominant in deeper offshore stations. Only 24.6% of total OTUs were shared among all areas. Beta-diversity was generally lower between the lagoon and Jeddah (nearshore) than between either of those and the offshore area, suggesting a nearshore-offshore biodiversity gradient. The current approach allowed for a broad-range of benthic eukaryotic biodiversity to be analysed with significantly less labour than would be required by other traditional taxonomic approaches. Our findings suggest that next generation sequencing techniques have the potential to provide a fast and standardised screening of benthic biodiversity at large spatial and temporal scales. PMID:26525270

  20. Determining Microeukaryotic Plankton Community around Xiamen Island, Southeast China, Using Illumina MiSeq and PCR-DGGE Techniques.

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    Lingyu Yu

    Full Text Available Microeukaryotic plankton are important components of aquatic environments and play key roles in marine microbial food webs; however, little is known about their genetic diversity in subtropical offshore areas. Here we examined the community composition and genetic diversity of the microeukaryotic plankton in Xiamen offshore water by PCR-DGGE (polymerase chain reaction-denaturing gradient gel electrophoresis, clone-based sequencing and Illumina based sequencing. The Illumina MiSeq sequencing revealed a much (approximately two orders of magnitude higher species richness of the microeukaryotic community than DGGE, but there were no significant difference in species richness and diversity among the northern, eastern, southern or western stations based on both methods. In this study, Copepoda, Ciliophora, Chlorophyta, Dinophyceae, Cryptophyta and Bacillariophyta (diatoms were the dominant groups even though diatoms were not detected by DGGE. Our Illumina based results indicated that two northern communities (sites N2 and N3 were significantly different from others in having more protozoa and fewer diatoms. Redundancy analysis (RDA showed that both temperature and salinity were the significant environmental factors influencing dominant species communities, whereas the full microeukaryotic community appeared to be affected by a complex of environmental factors. Our results suggested that extensive sampling combined with more deep sequencing are needed to obtain the complete diversity of the microeukaryotic community, and different diversity patterns for both abundant and rare taxa may be important in evaluating the marine ecosystem health.

  1. Bacterial and eukaryotic biodiversity patterns in terrestrial and aquatic habitats in the Sør Rondane Mountains, Dronning Maud Land, East Antarctica.

    Science.gov (United States)

    Obbels, Dagmar; Verleyen, Elie; Mano, Marie-José; Namsaraev, Zorigto; Sweetlove, Maxime; Tytgat, Bjorn; Fernandez-Carazo, Rafael; De Wever, Aaike; D'hondt, Sofie; Ertz, Damien; Elster, Josef; Sabbe, Koen; Willems, Anne; Wilmotte, Annick; Vyverman, Wim

    2016-06-01

    The bacterial and microeukaryotic biodiversity were studied using pyrosequencing analysis on a 454 GS FLX+ platform of partial SSU rRNA genes in terrestrial and aquatic habitats of the Sør Rondane Mountains, including soils, on mosses, endolithic communities, cryoconite holes and supraglacial and subglacial meltwater lenses. This inventory was complemented with Denaturing Gradient Gel Electrophoresis targeting Chlorophyta and Cyanobacteria. OTUs belonging to the Rotifera, Chlorophyta, Tardigrada, Ciliophora, Cercozoa, Fungi, Bryophyta, Bacillariophyta, Collembola and Nematoda were present with a relative abundance of at least 0.1% in the eukaryotic communities. Cyanobacteria, Proteobacteria, Bacteroidetes, Acidobacteria, FBP and Actinobacteria were the most abundant bacterial phyla. Multivariate analyses of the pyrosequencing data revealed a general lack of differentiation of both eukaryotes and prokaryotes according to habitat type. However, the bacterial community structure in the aquatic habitats was dominated by the filamentous cyanobacteria Leptolyngbya and appeared to be significantly different compared with those in dry soils, on mosses, and in endolithic habitats. A striking feature in all datasets was the detection of a relatively large amount of sequences new to science, which underscores the need for additional biodiversity assessments in Antarctic inland locations. PMID:26936447

  2. Diversity and Dynamics of Active Small Microbial Eukaryotes in the Anoxic Zone of a Freshwater Meromictic Lake (Pavin, France)

    Science.gov (United States)

    Lepère, Cécile; Domaizon, Isabelle; Hugoni, Mylène; Vellet, Agnès; Debroas, Didier

    2016-01-01

    Microbial eukaryotes play a crucial role in ecosystem functioning and oxygen is considered to be one of the strongest barriers against their local dispersal. However, diversity of microbial eukaryotes in freshwater habitats with oxygen gradients has previously received very little attention. We applied high-throughput sequencing (V4 region of the 18S rRNA gene) in conjunction with quantitative PCR (DNA and RNA) and fluorescent in situ hybridization (FISH) analyses, to provide an unique spatio-temporal analysis of microbial eukaryotes diversity and potential activity in a meromictic freshwater lake (lake Pavin). This study revealed a high genetic diversity of unicellular eukaryotes in the permanent anoxic zone of lake Pavin and allowed the discrimination of active vs. inactive components. Forty-two percent of the OTUs (Operational Taxonomic Units) are exclusively present in the monimolimnion, where Alveolata (Ciliophora and Dinophyceae) and Fungi (Dikarya and Chytrids) are the most active phyla and are probably represented by species capable of anaerobic metabolism. Pigmented eukaryotes (Haptophyceae and Chlorophyceae) are also present and active in this zone, which opens up questions regarding their metabolism. PMID:26904006

  3. Marine protist diversity in European coastal waters and sediments as revealed by high-throughput sequencing.

    Science.gov (United States)

    Massana, Ramon; Gobet, Angélique; Audic, Stéphane; Bass, David; Bittner, Lucie; Boutte, Christophe; Chambouvet, Aurélie; Christen, Richard; Claverie, Jean-Michel; Decelle, Johan; Dolan, John R; Dunthorn, Micah; Edvardsen, Bente; Forn, Irene; Forster, Dominik; Guillou, Laure; Jaillon, Olivier; Kooistra, Wiebe H C F; Logares, Ramiro; Mahé, Frédéric; Not, Fabrice; Ogata, Hiroyuki; Pawlowski, Jan; Pernice, Massimo C; Probert, Ian; Romac, Sarah; Richards, Thomas; Santini, Sébastien; Shalchian-Tabrizi, Kamran; Siano, Raffaele; Simon, Nathalie; Stoeck, Thorsten; Vaulot, Daniel; Zingone, Adriana; de Vargas, Colomban

    2015-10-01

    Although protists are critical components of marine ecosystems, they are still poorly characterized. Here we analysed the taxonomic diversity of planktonic and benthic protist communities collected in six distant European coastal sites. Environmental deoxyribonucleic acid (DNA) and ribonucleic acid (RNA) from three size fractions (pico-, nano- and micro/mesoplankton), as well as from dissolved DNA and surface sediments were used as templates for tag pyrosequencing of the V4 region of the 18S ribosomal DNA. Beta-diversity analyses split the protist community structure into three main clusters: picoplankton-nanoplankton-dissolved DNA, micro/mesoplankton and sediments. Within each cluster, protist communities from the same site and time clustered together, while communities from the same site but different seasons were unrelated. Both DNA and RNA-based surveys provided similar relative abundances for most class-level taxonomic groups. Yet, particular groups were overrepresented in one of the two templates, such as marine alveolates (MALV)-I and MALV-II that were much more abundant in DNA surveys. Overall, the groups displaying the highest relative contribution were Dinophyceae, Diatomea, Ciliophora and Acantharia. Also, well represented were Mamiellophyceae, Cryptomonadales, marine alveolates and marine stramenopiles in the picoplankton, and Monadofilosa and basal Fungi in sediments. Our extensive and systematic sequencing of geographically separated sites provides the most comprehensive molecular description of coastal marine protist diversity to date. PMID:26119494

  4. Haematological and gill responses in parasitized tilapia from valley of Tijucas River, SC, Brazil Respostas hematológica e branquial de tilápia parasitada do vale do Rio Tijucas, SC, Brasil

    Directory of Open Access Journals (Sweden)

    Tatiana Maslowa Pegado de Azevedo

    2006-04-01

    Full Text Available In the State of Santa Catarina there is no information about haematological and parasitological characteristics of fish maintained in feefishing operations and manured ponds. This work compared the haematological characteristics of Nile tilapia parasitized or not, captured in a property situated in Nova Trento, SC, Brazil, between August 2003 and July 2004. During the studied period, the water temperature, pH, dissolved oxygen, alkalinity, ammonia and transparency were measured. Ten fish were collected monthly either in a feefishing or in a pond receiving pig manure, and anesthetized with benzocaine solution for haematological, parasitological and histopathological exams. From a total of 360 analyzed fish, 64 (17.8% were parasitized with Cichlidogyrus sclerosus and Cichlidogyrus sp. (Monogenoidea: Ancyrocephalidae, 20 (5.5% with Trichodina sp. (Protozoa: Ciliophora, and four (1.1% with Lamproglena sp. (Crustacea: Lernaeidae. The total number of erythrocytes, thrombocytes and leucocytes, glucose rate and the percentages of hematocrit, lymphocytes, monocytes and neutrophils did not show relation with parasitism. Histopathological analysis showed moderate hyperplasia and absence of congestion. The low level of parasitism found in the animals was not responsible for haematological alterations.No Estado de Santa Catarina não existe informação sobre características hematológicas e parasitológicas que compare peixes mantidos em pesque-pague e com dejetos de suínos. Este trabalho estudou as características hematológicas da tilápia do Nilo parasitada ou não, capturada numa propriedade em Nova Trento, SC, Brasil, entre agosto de 2003 e julho de 2004. Durante o período a temperatura da água, pH, oxigênio, alcalinidade e transparência foram medidos. Dez peixes foram mensalmente coletados no pesque-pague e num viveiro que recebia dejetos de suínos, anestesiados com benzocaína para análise hematológica, parasitológica e histopatol

  5. [Biodiversity and Function Analyses of BIOLAK Activated Sludge Metagenome].

    Science.gov (United States)

    Tian, Mei; Liu, Han-hu; Shen, Xin; Zhao, Fang-qing; Chen, Shuai; Yao, Yong-jia

    2015-05-01

    The BIOLAK is a multi-stage activated sludge process, which has been successfully promoted worldwide. However, the biological community and function of the BIOLAK activated sludge ( the core component in the process) have not been reported so far. In this study, taking Lianyungang Dapu Industrial Zone WWTP as an example, a large-scale metagenomic data (428 588 high-quality DNA sequences) of the BIOLAK activated sludge were obtained by means of a new generation of high-throughput sequencing technology. Amazing biodiversity was revealed in the BIOLAK activated sludge, which included 47 phyla, 872 genera and 1351 species. There were 33 phyla identified in the Bacteria domain (289 933 sequences). Proteohacteria was the most abundant phylum (62.54%), followed by Bacteroidetes (11.29%), Nitrospirae ( 5. 65%) and Planctomycetes (4.79%), suggesting that these groups played a key role in the BIOLAK wastewater treatment system. Among the 748 bacterial genera, Nitrospira (5.60%) was the most prevalent genus, which was a key group in the nitrogen cycle. Followed by Gemmatimonas (2.45%), which was an important genus in the biological phosphorus removal process. In Archaea domain (1019 sequences), three phyla and 39 genera were detected. In Eukaryota domain (1055 sequences), 60 genera and 10 phyla were identified, among which Ciliophora was the largest phylum (257 sequences). Meanwhile, 448 viral sequences were detected in the BIOLAK sludge metagenome, which were dominated by bacteriophages. The proportions of nitrogen, aromatic compounds and phosphorus metabolism in the BIOLAK sludge were 2.50%, 2.28% and 1.56%, respectively, which were higher than those in the sludge of United States and Australia. Among four processes of nitrogen metabolism, denitrification-related genes were most abundant (80.81%), followed by ammonification (12.78%), nitrification,(4.38%) and nitrogen fixation (2.04%). In conclusion, the BIOLAK activated sludge had amazing biodiversity, meanwhile

  6. ASPECTOS ECOLÓGICOS DA COMUNIDADE DE PARASITOS EMDUAS ESPÉCIES DE LORICARIIDAE DA BACIA IGARAPÉ FORTALEZA, ESTADO DO AMAPÁ, BRASIL

    Directory of Open Access Journals (Sweden)

    Raissa Alves Gonçalves

    2014-04-01

    Full Text Available Os parasitos têm sido reconhecidos como importantes componentes dos ecossistemas. Esses usam o ambiente para a sua transmissão e podem infectar diversas espécies de peixe no ecossistema. O presente estudo investigou a ecologia parasitária em Squaliforma emarginata e Harttia duriventris da bacia Igarapé Fortaleza, região de Macapá, estado do Amapá, Norte do Brasil. Para ambos os peixes houve similar nível de infecção por Ichthyophthirius multifiliis (Ciliophora, parasito dominante e com dispersão agregada. Spironucleus sp. (Hexamitidae ocorreu somente nas brânquias de H. duriventris, enquanto Trinigyrus mourei (Monogenoidea e Procamallanus inopinatus (Camallanidae foram encontrados somente S. emarginata. O índice de Brillouin, riqueza de espécies de parasitos, uniformidade e dominância de Berger-Parker foram maiores em S. emarginata, mas paraambos os hospedeiros a comunidade parasitária foi caracterizada por baixa diversidade e baixa uniformidade. Em H. duriventris e S. emarginata, o baixo parasitismo não afetou o fator de condição relativo (Kn dos hospedeiros. Em S. emarginata houve correlação positiva da abundância de I. multifiliis com o comprimento, peso e Kn dos hospedeiros,enquanto que em H. druventris somente o peso e Kn mostram correlação com a abundância desse ciliado. Este foi o primeiro registro de I. multifiliis, Spironucleus sp. e P.inopinatus para H. duriventris e S. emarginata. Palavras-chave: Amazônia, Diversidade, Parasitos, Peixes de água doce, Metazoários. DOI: http://dx.doi.org/10.18561/2179-5746/biotaamazonia.v4n1p15-21

  7. Water quality and potamoplankton evaluation of the Nile River in Upper Egypt

    Directory of Open Access Journals (Sweden)

    Ahmed Mohamed El-Otify

    2015-06-01

    Full Text Available Aim: The composition, abundance, community structure of potamoplankton and major physical and chemical variables of the Nile water in Upper Egypt were investigated to assess its status in different seasons during 2007.MethodsWater samples were collected seasonally during 2007 from six investigated sites from variable depths at levels of 0, 2.5 and 5 m. The area of this investigation is defined as the southern 120 Km of the main stream of the Nile in Upper Egypt (24° 04’ – 25° 00’ latitudes and 32° 51’ – 32° 54’ longitudes, downstream of Aswan Old Dam.ResultsAltogether, 121 potamoplankton species, of which 85 related to phytoplankton and 36 appertaining to zooplankton were recorded. Most numerous phytoplankton were Chlorophyceae (42 species followed by Bacillariophyceae (30 species. Cyanobacteria and Dinophyceae were less numerous with only 11 and 2 species, respectively. Zooplankton species were mainly belonging to three systematic groups namely; Rotifera (24 species, Copepoda (3 species and Cladocera (9 species. Besides, other rare zooplankton including Platyhelminthes, Nemata and Ciliophora were sparsely encountered. The main hydrological conditions characterizing the investigated area include water level fluctuations (˂82 - ˃85 m above sea level, relatively high current velocity (0.8 - 1.3 m sec–1 and disposal of wastewater. Plankton populations were variably but rather weakly dependent on the major nutrients due to their excessive availability in accessible form for uptake by the producers. For phytoplankton, the community structure was categorized in relation to temperature, pH, SO42– and Mg2+. For zooplankton, the community structure was categorized in relation to conductivity as well as Mg2+. Sampling intervals were inadequate to demonstrate the existing successional pattern of the Nile potamoplankton community. Alterations in the phytoplankton community structure accompanied changes in water temperature represented

  8. 深海热液口化能合成共生作用的研究进展%Research Progress of the Chemosynthetic Symbioses in the Deep-Sea Hydrothermal Vent

    Institute of Scientific and Technical Information of China (English)

    刘昕明; 林荣澄; 黄丁勇

    2013-01-01

    海洋无脊椎动物和细菌间的化能合成共生作用的发现,改变了人们对深海热液口初级生产力主要来源的认知.近年的研究表明,营化能合成共生的动物隶属于纤毛门、软体动物门、环节动物门和节肢动物门;其中无脊椎动物作为宿主在与共生菌的长期共生过程中,伴随着部分器官和功能的退化或消失,逐渐形成和演化出了与此相适应的形态结构,并产生了一些特殊的行为;在深海热液口发现的所有化能合成共生菌都属于革兰氏阴性菌,它们的宿主大致可以分为2个群体;通过16 SrRNA基因编码分析,不同代谢类型的共生菌在系统发育中通常处于不同分支,形态也有所差异;共生菌独特的传播方式和进化模式也使其更加适应共生生活;由无脊椎动物和化能合成细菌构成的共生体系与环境相互作用,影响了深海热液口生态系统的演化.对共生菌蛋白质及代谢组学的研究,以及对宿主生理和代谢机制的研究将成为未来热液口化能合成共生作用研究的新热点.%The discovery of the chemosynthetic symbioses between marine invertebrates and bacteria revolutionized our understanding of the energy sources that fuel primary productivity in the deep sea.Chemosynthetic host were classified within four major group including Ciliophora,Mollusca,Annelida and Arthropoda; Symbiotic invertebrates with anatomical adaptations of chemosynthetic associations are usually characterized by rudimentary or absent digestive system.Effective behavioural and physiological strategies are also used by animals to supply their symbionts with both reductants and oxidants.All the symbionts are Gram negative bacteria,and clustered in two different branches related to symbiont type in the phylogenetic tree based on the 16S rRNA gene sequences,distinct differences in morphology were also observed between the two groups.The transmission and evolution strategy utilized