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Sample records for ciliate zoothamnium niveum

  1. Sulfide assimilation by ectosymbionts of the sessile ciliate, Zoothamnium niveum

    DEFF Research Database (Denmark)

    Røy, Hans; Vopel, Kay; Huettel, Marcus;

    2009-01-01

    We investigated the constraints on sulfide uptake by bacterial ectosymbionts on the marine peritrich ciliate Zoothamnium niveum by a combination of experimental and numerical methods. Protists with symbionts were collected on large blocks of mangrove-peat. The blocks were placed in a flow cell wi...... filtering organs. Electronic supplementary material  The online version of this article (doi: 10.1007/s00227-008-1117-6 ) contains supplementary material, which is available to authorized users.......We investigated the constraints on sulfide uptake by bacterial ectosymbionts on the marine peritrich ciliate Zoothamnium niveum by a combination of experimental and numerical methods. Protists with symbionts were collected on large blocks of mangrove-peat. The blocks were placed in a flow cell with...

  2. Monophyly or polyphyly? Possible conflict between morphological and molecular interpretations of the well-known genus Zoothamnium (Ciliophora, Peritrichia)

    Science.gov (United States)

    Li, Lifang; Ma, Honggang; Al-Rasheid, Khaled A. S.

    2015-03-01

    In this paper, we explore possible conflict between morphological and molecular interpretations of phylogenetic relationships within the well-known peritrichous genus Zoothamnium. On the basis of morphological evidence, for a long time this genus has been believed to be a well-defined monophyletic taxon. Nonetheless, Zoothamnium exhibits higher genetic diversity than the gross morphology of its species. Here, we used all available genetic information for the small subunit of ribosomal RNA (SSU rRNA) and internal transcribed spacer region (ITS1-5.8S-ITS2) for this genus to reconstruct phylogenies for four datasets (SSU rRNA, ITS1, ITS2, and ITS1-5.8S-ITS2) and a combined dataset (SSU rRNA+ITS1-5.8SITS2) using different phylogenetic methods and with consideration of the secondary structure of the genes. Confidence in phylogenetic tree selection was assessed with the approximately unbiased test. The molecular results showed both that Zoothamnium is more likely to be polyphyletic, and morphologically similar genera Zoothamnopsis and Myoschiston were always nested among Zoothamnium species. Accordingly, as with some other groups of ciliates, to understand more fully the correct phylogeny of Zoothamnium there remains a need for additional data from both morphological and molecular studies, covering additional Zoothamnium spp. and members of closely related genera (e.g. Zoothamnopsis, Myoschiston, and Epistylis).

  3. Ciliate protozoa

    International Nuclear Information System (INIS)

    Gruby and Delafond discovered the rumen protozoa in 1843 and suggested that their digestive activity was the primary means by which ruminants could survive on an all-plant diet. However, subsequent studies have clearly shown that bacteria actually play a prominent role in the fermentation of plant materials, and fungi are also involved. The rumen ciliates range in size from 18 to 500 μm and can be enumerated and identified microscopically at relatively low magnifications. On the basis of cell morphology, they have been classified into at least five families containing 24 different genera. Although new species are still being reported yearly, the last summary was compiled in 1992 by Williams and Coleman and listed 257 separate species. Ciliate protozoa belonging to different families are found in most other herbivorous mammals. This includes those animals in which fermentation occurs in the hindgut, such as the horse, elephant, rhinoceros and capybara, as well as in the non-ruminant foregut fomenters, i.e. camelids, hippopotamus and kangaroo. These ciliates can be enumerated and identified using the methods and techniques presented in this chapter, presuming appropriate procedures are used for obtaining representative samples from the animal

  4. Race 3, a new and highly virulent race of Fusarium oxysporum f. sp. niveum causing Fusarium wilt in watermelon

    Science.gov (United States)

    Three races (0, 1, and 2) of Fusarium oxysporum f. sp. niveum have been previously described in watermelon (Citrullus lanatus) based on their ability to cause disease on differential watermelon genotypes. Four isolates of F. oxysporum f. sp. niveum collected from wilted watermelon plants or infeste...

  5. Acylphloroglucinol Derivatives from the South African Helichrysum niveum and Their Biological Activities

    Directory of Open Access Journals (Sweden)

    Olugbenga K. Popoola

    2015-09-01

    Full Text Available Phytochemical investigation of aerial parts of Helichrysum niveum (H. niveum using different chromatographic methods including semi-preparative HPLC afforded three new (1–3 and six known (4–10 acylphloroglucinols alongside a known dialcohol triterpene (11. The structures of the isolated compounds were characterized accordingly as 1-benzoyl-3 (3-methylbut-2-enylacetate-phloroglucinol (helinivene A, 1, 1-benzoyl-3 (2S-hydroxyl-3-methylbut-3-enyl-phloroglucinol (helinivene B, 2, 8-(2-methylpropanone-3S,5,7-trihydroxyl-2,2-dimethoxychromane (helinivene C, 3, 1-(2-methylbutanone-4-O-prenyl-phloroglucinol (4, 1-(2-methylpropanone-4-O-prennyl-phloroglucinol (5, 1-(butanone-3-prenyl-phloroglucinol (6, 1-(2-methylbutanone-3-prenyl-phloroglucinol (7, 1-butanone-3-(3-methylbut-2-enylacetate-phloroglucinol (8, 1-(2-methylpropanone-3-prenylphloroglucinol (9, caespitate (10, and 3β-24-dihydroxyterexer-14-ene (11. Excellent total antioxidant capacities were demonstrated by helinivenes A and B (1 and 2 when measured as oxygen radicals absorbance capacity (ORAC, ferric-ion reducing antioxidant power (FRAP, trolox equivalent absorbance capacity (TEAC and including the inhibition of Fe2+-induced lipid peroxidation (IC50 = 5.12 ± 0.90; 3.55 ± 1.92 µg/mL, while anti-tyrosinase activity at IC50 = 35.63 ± 4.67 and 26.72 ± 5.05 µg/mL were also observed for 1 and 2, respectively. This is the first chemical and in vitro biological study on H. niveum. These findings underpin new perspectives for the exploitation of these natural phenolic compounds in applications such as in the natural cosmeceutical and pharmaceutical sectors.

  6. The Ciliate Colpoda: "Instant" Protozoan

    Science.gov (United States)

    Smith, Anne Muller; Giese, Arthur C.

    1973-01-01

    Describes the characteristics of Colpoda, a ciliated protozoan which is able to survive in a dry, encysted state for long periods of time. Outlines the procedures for culturing the organism and producing cyst preparations, and recommends its use in the high school biology laboratory. (JR)

  7. Biochemical and Physiological Changes of Three Watermelon Cultivars Infested with Fusarium oxysporum f. Sp.niveum

    Institute of Scientific and Technical Information of China (English)

    WANG Jian-ming; HAO Chi; GUO Chun-rong; ZHANG Zuo-gang; HE Yun-chun

    2002-01-01

    The dynamic changes in membrane permeability, activities of disease-related enzymes, and contents of pathogenesis-relevant chemical compounds and photosynthetic pigments in root cells of three watermelon cultivars were studied after inoculation with Fusarium oxysporum f. sp. niveum at seedling stage. The results showed that the capacity of self-regulating and returning to normal status of cultivar Kelunsheng (resistant) was greater than that of a susceptible cultivar, Zaohua, in terms of malonaldehyde (MDA) content, relative conductivity, and activity of superoxide dismutase (SOD) and catalase (CAT). The resistant cultivar maintained a higher activity of dehydrogenase, higher content of vitamin C(Vc), and relatively lower content of soluble sugar than the susceptible cultivar. The content of soluble protein was higher in the resistant cultivar than that in the susceptible one at day 1 after inoculation. The capacities of the resistant cultivar to inhibit chlorophyll deterioration and maintain a higher carotenoid content were significantly stronger than those of the susceptible cultivar.

  8. Rhizosphere microbial communities from resistant and susceptible watermelon cultivars showed different response to fusarium oxysporum f. sp. niveum inoculation

    International Nuclear Information System (INIS)

    Fusarium oxysporum f. sp. niveum (FON), a soil-borne pathogen of watermelon (Citrullus lanatus), can cause substantial production losses worldwide. In this study, plate culture and PCR-denaturing gradient gel electrophoresis (DGGE) methods were used to evaluate the effects of inoculation of Fusarium oxysporum f.sp. niveum on rhizosphere microbial communities of different watermelon cultivars to FON. Two methods indicated that the effects of watermelon rhizosphere microbial community of different resistance cultivars to FON were much different. Populations of culturable bacteria and actinomycetes in the rhizosphere of susceptible watermelon cultivar were significantly lower than in the resistant cultivar after inoculation (P<0.05), but the opposite result was observed for fungi. Principal component analysis of bacterial and fungal community structure also showed that the cultivar of FON-inoculated soil treatment were separated from the non-inoculated controls after inoculation, and there was clear discrimination between the susceptible cultivars and the resistant cultivars. Sequence analysis of specific bands from DGGE profiles showed that specific rhizosphere bacterial and fungal groups differed between watermelon cultivars after inoculation . Both methods demonstrated that different resistant watermelon cultivars occupied different rhizosphere microbial communities, and and disease suppression might be correlated with high microbial diversity. F. oxysporum f. sp. Niveum alters the structure and functional diversity of microbial communities associated with watermelon rhizosphere. (author)

  9. Ciliates Expel Environmental Legionella-Laden Pellets To Stockpile Food

    OpenAIRE

    Hojo, Fuhito; Sato, Daisuke; Matsuo, Junji; Miyake, Masaki; Nakamura, Shinji; Kunichika, Miyuki; Hayashi, Yasuhiro; Yoshida, Mitsutaka; Takahashi, Kaori; Takemura, Hiromu; Kamiya, Shigeru; Yamaguchi, Hiroyuki

    2012-01-01

    When Tetrahymena ciliates are cultured with Legionella pneumophila, the ciliates expel bacteria packaged in free spherical pellets. Why the ciliates expel these pellets remains unclear. Hence, we determined the optimal conditions for pellet expulsion and assessed whether pellet expulsion contributes to the maintenance of growth and the survival of ciliates. When incubated with environmental L. pneumophila, the ciliates expelled the pellets maximally at 2 days after infection. Heat-killed bact...

  10. Optimal swimming of model ciliates

    Science.gov (United States)

    Michelin, Sebastien; Lauga, Eric

    2010-11-01

    In order to swim at low Reynolds numbers, microorganisms must undergo non-time-reversible shape changes. In ciliary locomotion, this symmetry breaking is achieved through the actuation of many flexible cilia distributed on the surface of the organism. Experimental studies have demonstrated the collective synchronization of neighboring cilia (metachronal waves), whose exact origin is still debated. Here we consider the hydrodynamic energetic cost of ciliary locomotion and consider an axisymmetric envelope model with prescribed tangential surface displacements. We show that the periodic strokes of this model ciliated swimmer that minimize the energy dissipation in the surrounding fluid achieve symmetry-breaking at the organism level through the propagation of wave patterns similar to metachronal waves. We analyze the properties of the optimal strokes, in particular the impact on the swimming performance introduced by a restriction on maximum cilia tip displacement due to the finite cilia length.

  11. Utilization and Inheritance of Watermelon Resistance to Fusarium oxys porum f. sp. niveum Introduced from Bottle Gourd

    Institute of Scientific and Technical Information of China (English)

    2001-01-01

    Sugar Baby susceptible to Fusarium oxysporum f. sp. niveum was crossed with high resistant male parents D3 - 1 and D3 - 2, respectively. F1 hybrids showed high resistance. The segregation ratios of resistance to susceptibility of F2 and of BC1 hybrid population from Sugar Baby tallied with 3: 1 and 1: 1, respectively. The results indicated that the resistance to Fusarium wilt was a kind of dominant inheritance controlled by mono- gene or mono- segment DNA. Furthermore, 5 hybrid combinations with fine character were bred. Among them, 3 were high resistant to Fusarium wilt,and 2 were medium res stant

  12. Ciliate communities consistently associated with coral diseases

    Science.gov (United States)

    Sweet, M. J.; Séré, M. G.

    2016-07-01

    Incidences of coral disease are increasing. Most studies which focus on diseases in these organisms routinely assess variations in bacterial associates. However, other microorganism groups such as viruses, fungi and protozoa are only recently starting to receive attention. This study aimed at assessing the diversity of ciliates associated with coral diseases over a wide geographical range. Here we show that a wide variety of ciliates are associated with all nine coral diseases assessed. Many of these ciliates such as Trochilia petrani and Glauconema trihymene feed on the bacteria which are likely colonizing the bare skeleton exposed by the advancing disease lesion or the necrotic tissue itself. Others such as Pseudokeronopsis and Licnophora macfarlandi are common predators of other protozoans and will be attracted by the increase in other ciliate species to the lesion interface. However, a few ciliate species (namely Varistrombidium kielum, Philaster lucinda, Philaster guamense, a Euplotes sp., a Trachelotractus sp. and a Condylostoma sp.) appear to harbor symbiotic algae, potentially from the coral themselves, a result which may indicate that they play some role in the disease pathology at the very least. Although, from this study alone we are not able to discern what roles any of these ciliates play in disease causation, the consistent presence of such communities with disease lesion interfaces warrants further investigation.

  13. Dispersal of the parasitic ciliate Lambornella clarki: implications for ciliates in the biological control of mosquitoes.

    OpenAIRE

    Egerter, D E; Anderson, J R; Washburn, J O

    1986-01-01

    Lambornella clarki (Ciliophora: Tetrahymenidae), an endoparasite of Aedes sierrensis (Diptera: Culicidae), is dispersed by infected adult mosquitoes. Invasion of the ovaries induces parasitically castrated females to exhibit oviposition behavior and thereby actively disperse ciliates through deposition into water. Oviposition behavior of infected females is prolonged and mimics that of normal gravid females in their first gonotropic cycle. Adults of both sexes also passively disperse ciliates...

  14. Are freshwater pelagic ciliates important bacterivores?

    Czech Academy of Sciences Publication Activity Database

    Šimek, Karel; Jezbera, Jan; Macek, Miroslav; Nedoma, Jiří; Dolan, J. R.

    Innsbruck : Institute for Limnology of the Austrian Academy of Sciences, 2003. s. 36. [Assessing the Variability in Aquatic Microbial Populations: Facts and Fiction. 16.02.2003-20.02.2003, Mondsee] Institutional research plan: CEZ:AV0Z6017912 Keywords : flagellate and ciliate bacterivory * freshwater plankton Subject RIV: EH - Ecology, Behaviour

  15. Genetic analysis and chromosome mapping of resistance to Fusarium oxysporum f. sp. niveum (FON) race 1 and race 2 in watermelon (Citrullus lanatus L.)

    OpenAIRE

    Ren, Yi; Di Jiao,; Gong, Guoyi; Zhang, Haiying; Guo, Shaogui; Zhang, Jie; Xu, Yong

    2015-01-01

    Fusarium wilt (FW) caused by Fusarium oxysporum f. sp. niveum (FON) is the major soilborne disease of watermelon (Citrullus lanatus L.). The development and deployment of resistant cultivars is generally considered to be an effective approach to control FW. In this study, an F8 population consisting of 103 recombinant inbred lines derived from a cross between the cultivar 97103 and a wild accession PI 296341-FR was used for FON race 1 and race 2 fungal inoculations. One major QTL on chromosom...

  16. Biodiversity patterns of soil ciliates along salinity gradients.

    Science.gov (United States)

    Zhao, Feng; Xu, Kuidong

    2016-04-01

    We evaluated ciliate diversity in saline soils with a salinity range from 6.5 to 65psu by the morphological method of the Ludox-quantitative protargol stain (QPS) and the molecular techniques of ciliate-specific clone library and denaturing gradient gel electrophoresis. No active ciliates could be detected with the Ludox-QPS method, while high molecular diversity of ciliates was found. The highest ciliate molecular diversity was obtained from the soil at salinity of 8.9psu, moderate diversity was found at salinity of 6.5psu, and the diversity sharply decreased at salinity of 50.5psu. By contrast, the number of ciliate classes clearly decreased with increasing soil salinity: six, five, four and two classes from sites with salinity of 6.5psu, 8.9psu, 29.5psu and 50.5psu, respectively. Ciliate diversity pattern is different from that of bacteria, whose diversity is also high in extremely saline environments. Meanwhile, the composition of ciliate community was significantly different along salinity gradient. Colpodea and Oligohymenophorea were diverse in soils at salinity less than 29.5psu, while absent in soils with salinity above 50.5psu. BIOENV analysis indicated soil salinity and water content were the main factors regulating the distribution of ciliates in saline soils. PMID:26773903

  17. Photoletter to the editor: Subcutaneous ciliated Mullerian cyst.

    Science.gov (United States)

    Keisling, Matthew; Marinovich, Adrian; Burkey, Brooke

    2015-12-31

    Cutaneous ciliated cysts are benign lesions occurring primarily on the lower extremity of girls and young women. We present a case of a cutaneous ciliated Mullerian cyst arising in the lower leg of a 14-year-old girl, with brief discussion of etiology and diagnosis. This is a rare entity with approximately 50 cases in the literature. PMID:26848322

  18. Reality-and-Desire in Ciliates

    Science.gov (United States)

    Brijder, Robert; Hoogeboom, Hendrik Jan

    The theory of gene assembly in ciliates has a number of similarities with the theory of sorting by reversal. Both theories model processes that are based on splicing, and have a fixed begin and end product. The main difference is the type of splicing operations used to obtain the end product from the begin product. In this overview paper, we show how the concept of breakpoint graph, known from the theory of sorting by reversal, can be used in the theory of gene assembly. Our aim is to present the material in an intuitive and informal manner to allow for an efficient introduction into the subject.

  19. Experimental and modeling evidence of appendicularian-ciliate interactions

    DEFF Research Database (Denmark)

    Lombard, Fabien; Eloire, Damien; Gobet, Angelique;

    2010-01-01

    Interactions between appendicularians and ciliates were observed over the life span of Oikopleura dioica in laboratory cultures and clarified with the use of mathematical modeling and microscopic observations. Complex interactions including competition, parasitism, predation, and histophagy occur...

  20. Studies on experimental culture of a marine ciliate Fabrea salina

    Digital Repository Service at National Institute of Oceanography (India)

    Rattan, R.; Ansari, Z.A; Chatterji, A

    Studies were conducted on the culture of a marine ciliate, Fabrea salina in the laboratory condition. Three types of inert feed; commercial yeast, fermented wheat bran and fermented rise bran were tested to study their suitability as artificial feed...

  1. DNA rearrangements directed by non-coding RNAs in ciliates

    OpenAIRE

    Mochizuki, Kazufumi

    2010-01-01

    Extensive programmed rearrangement of DNA, including DNA elimination, chromosome fragmentation, and DNA descrambling, takes place in the newly developed macronucleus during the sexual reproduction of ciliated protozoa. Recent studies have revealed that two distant classes of ciliates use distinct types of non-coding RNAs to regulate such DNA rearrangement events. DNA elimination in Tetrahymena is regulated by small non-coding RNAs that are produced and utilized in an RNAi-related process. It ...

  2. Community Structure and Biodiversity of Soil Ciliates at Dongzhaigang Mangrove Forest in Hainan Island, China

    OpenAIRE

    Jing Li; Qingyu Liao; Mei Li; Jinhong Zhang; Nora Fungyee Tam; Runlin Xu

    2010-01-01

    The distribution of soil ciliates in three different habitats within a typical mangrove forest in Dongzhaigang, Hainan, China was investigated. The abundance, biodiversity, and community similarity of ciliates in fresh and air-dried soil with different, physical/chemical properties were analyzed. Three Classes, 11 Orders, 34 Genera, and 70 species of ciliates were found with the first dominant group being Hypotrichida. Ciliate biodiversities followed Site B < Site A < Site C in both fresh and...

  3. The Effects of Oil Pollution on Free-living Ciliates

    OpenAIRE

    ASADULLAYEVA, Esmira; ALEKPEROV, Ilham

    1999-01-01

    For the first time the effects of oil pollution on free-living ciliates at community level and also at cellular level were studied at the same time. The effects of various oil concentrations from two oil fields (Sangachal and Guneshli) on psammophile and periphyton ciliates were studied. As a result, the parameters using the oil pollution biotesting with the help of these test systems were determined. Oil from the Guneshli oil field was determined to be more toxic. The effects of oil pollutio...

  4. Act together - implications of symbioses in aquatic ciliates

    DEFF Research Database (Denmark)

    Dziallas, Claudia; Allgaier, Martin; Monaghan, Michael T.;

    2012-01-01

    ecosystems, which are often highly variable, harsh, and nutrient-deficient habitats. It is therefore not surprising that symbioses are widespread in both marine and freshwater environments. Symbioses in aquatic ciliates are good model systems for exploring symbiont-host interactions. Many ciliate species are......Mutual interactions in the form of symbioses can increase the fitness of organisms and provide them with the capacity to occupy new ecological niches. The formation of obligate symbioses allows for rapid evolution of new lifeforms including multitrophic consortia. Microbes are important components...

  5. 2-Aminoethylphosphonic acid concentrations in some rumen ciliate protozoa.

    OpenAIRE

    Whitelaw, F G; Bruce, L. A.; Eadie, J M; Shand, W J

    1983-01-01

    The concentration of 2-aminoethylphosphonic acid has been measured in seven genera of rumen ciliate protozoa. Expressed as milligrams per gram of total nitrogen, 2-aminoethylphosphonic acid concentrations ranged from 17.2 in Ophryoscolex spp. to 72.4 in Eremoplastron spp.

  6. Tipification of oligotrophic lakes using the ciliate assemblage structure

    Czech Academy of Sciences Publication Activity Database

    Macek, Miroslav; Lugo-Vázquez, A.; Šimek, Karel

    Messina: Istituto per l Ambiente Marino Costiero, 2002 - (Giuliano, L.; Yakimov, M.). s. L112 [Symposium on Aquatic Microbial Ecology SAME-8 /8./. 25.10.2002-30.10.2002, Taormina] Institutional research plan: CEZ:AV0Z6017912 Keywords : tipification * oligotrophic lakes * ciliate assemblage Subject RIV: DA - Hydrology ; Limnology

  7. Development of the molecular methods for rapid detection and differentiation of Fusarium oxysporum and F. oxysporum f. sp. niveum in Taiwan.

    Science.gov (United States)

    Lin, Ying-Hong; Chen, Kan-Shu; Chang, Jing-Yi; Wan, Yu-Ling; Hsu, Ching-Chi; Huang, Jenn-Wen; Chang, Pi-Fang Linda

    2010-09-30

    Fusarium wilt, caused by Fusarium oxysporum (Fo), is one of the most important fungal diseases worldwide. Like other plant pathogens, Fo displays specialized forms in association with its hosts. For example, F. oxysporum f. sp. niveum (Fon) is the damaging pathogen causing Fusarium wilt disease on watermelon, whereas F. oxysporum f. sp. cubense is the pathogen that infects banana. A rapid and reliable pathogen identification or disease diagnosis is essential for the integrated disease management practices in many crops. In this study, two new primer sets, Fon-1/Fon-2 and FnSc-1/FnSc-2, were developed to differentiate Fon and Fo, respectively. The PCR method using the novel primer sets has high sensitivity to detect Fon when the DNA concentration was as low as 0.01 pg or when the conidia number was as few as 5. In comparison with the published primer set, the Fon-1/Fon-2 primer set, derived from the sequence of OP-M12 random primer-amplified fragment, produced a 174 bp DNA fragment, and was more specific to Fon in Taiwan. In addition, with optimized PCR parameters, the molecular method using the Fon-1/Fon-2 primer set could directly detect Fon even when watermelon samples were collected in its early stage of disease development. PMID:20471505

  8. On computational properties of gene assembly in ciliates

    Directory of Open Access Journals (Sweden)

    Vladimir Rogojin

    2010-11-01

    Full Text Available Gene assembly in stichotrichous ciliates happening during sexual reproduction is one of the most involved DNA manipulation processes occurring in biology. This biological process is of high interest from the computational and mathematical points of view due to its close analogy with such concepts and notions in theoretical computer science as permutation and linked list sorting and string rewriting. Studies on computational properties of gene assembly in ciliates represent a good example of interdisciplinary research contributing to both computer science and biology. We review here a number of general results related both to the development of different computational methods enhancing our understanding on the nature of gene assembly, as well as to the development of new biologically motivated computational and mathematical models and paradigms. Those paradigms contribute in particular to combinatorics, formal languages and computability theories.

  9. Social biases determine spatiotemporal sparseness of ciliate mating heuristics

    OpenAIRE

    Clark, Kevin B

    2012-01-01

    Ciliates become highly social, even displaying animal-like qualities, in the joint presence of aroused conspecifics and nonself mating pheromones. Pheromone detection putatively helps trigger instinctual and learned courtship and dominance displays from which social judgments are made about the availability, compatibility, and fitness representativeness or likelihood of prospective mates and rivals. In earlier studies, I demonstrated the heterotrich Spirostomum ambiguum improves mating compet...

  10. The role of ciliate protozoa in the rumen

    OpenAIRE

    Newbold, Charles J.; de la Fuente, Gabriel; Belanche, Alejandro; Ramos-Morales, Eva; McEwan, Neil R.

    2015-01-01

    First described in 1843, Rumen protozoa with their striking appearance were assumed to be important for the welfare of their host. However, despite contributing up to 50% of the bio-mass in the rumen, the role of protozoa in rumen microbial ecosystem remains unclear. Phylogenetic analysis of 18S rDNA libraries generated from the rumen of cattle, sheep, and goats has revealed an unexpected diversity of ciliated protozoa although variation in gene copy number between species makes it difficult ...

  11. Ciliated epithelial cell lifespan in the mouse trachea and lung

    OpenAIRE

    Rawlins, Emma L.; Brigid L M Hogan

    2008-01-01

    The steady-state turnover of epithelial cells in the lung and trachea is highly relevant to investigators who are studying endogenous stem cells, manipulating gene expression in vivo, or using viral vectors for gene therapy. However, the average lifetime of different airway epithelial cell types has not previously been assessed using currently available genetic techniques. Here, we use Cre/loxP genetic technology to indelibly label a random fraction of ciliated cells throughout the airways of...

  12. Ciliate Paramecium is a natural reservoir of Legionella pneumophila

    OpenAIRE

    Kenta Watanabe; Ryo Nakao; Masahiro Fujishima; Masato Tachibana; Takashi Shimizu; Masahisa Watarai

    2016-01-01

    Legionella pneumophila, the causative agent of Legionnaires’ disease, replicates within alveolar macrophages and free-living amoebae. However, the lifestyle of L. pneumophila in the environment remains largely unknown. Here we established a novel natural host model of L. pneumophila endosymbiosis using the ciliate Paramecium caudatum. We also identified Legionella endosymbiosis-modulating factor A (LefA), which contributes to the change in life stage from endosymbiosis to host lysis, enabling...

  13. Acute toxicity of heavy metals towards freshwater ciliated protists

    International Nuclear Information System (INIS)

    The acute toxicity of five heavy metals to four species of freshwater ciliates (Colpidium colpoda, Dexiotricha granulosa, Euplotes aediculatus, and Halteria grandinella) was examined in laboratory tests. After exposing the ciliates to soluble compound of cadmium, copper, chromium, lead, and nickel at several selected concentrations, the mortality rate was registered and the LC5 values (with 95% confidence intervals) were calculated. Large differences appeared in sensitivities of the four species to the metals. H. grandinella showed the highest sensitivity for cadmium (0.07 mg l-1, LC5) and lead (0.12 mg l-1, LC5), whilst E. aediculatus showed the highest sensitivity for nickel (0.03 mg l-1, LC5). The comparison with data obtained with other species indicate that Halteria grandinella and Euplotes aediculatus are excellent and convenient bioindicator for evaluating the toxicity of waters and wastewaters polluted by heavy metals. The short time (24 h) and simplicity of the test procedure enable this test to be used in laboratory studies. - Ciliated protozoa are suitable bioindicators of heavy metal pollution in freshwater environments

  14. Effect of ciliates on nitrification and nitrifying bacteria in Baltic Sea sediments

    OpenAIRE

    Prast, M.; Bischof, Adrian A.; Waller, Uwe; Amann, R.; Berninger, U.-G.

    2007-01-01

    Nitrification in aquatic sediments is catalyzed by bacteria. While many autecological studies on these bacteria have been published, few have regarded them as part of the benthic microbial food web. Ciliates are important as grazers on bacteria, but also for remineralization of organic matter. We tested the hypothesis that ciliates can affect nitrification. Experiments with Baltic Sea sediments in laboratory flumes, with or without the addition of cultured ciliates, were conducted. We found i...

  15. Act together – implications of symbioses in aquatic ciliates

    Directory of Open Access Journals (Sweden)

    Claudia eDziallas

    2012-08-01

    Full Text Available Mutual interactions in form of symbioses can increase the fitness of organisms and provide them with the capacity to occupy new ecological niches. The formation of obligate symbioses allows for rapid evolution of new life forms including multitrophic consortia. Microbes are important components of many known endosymbioses and their short generation times and strong potential for genetic exchange may be important drivers of speciation. Hosts provide endo- and ectosymbionts with stable, nutrient-rich environments and protection from environmental stresses. This is of particular importance in aquatic ecosystems, which are often highly variable, harsh and nutrient-deficient habitats. Thus it is not surprising that symbioses are widespread in both marine and freshwater environments. Symbioses in aquatic ciliates are good model systems for exploring symbiont-host interactions. Many ciliate species are globally distributed and have been intensively studied in the context of plastid evolution. Their relatively large cell size offers an ideal habitat for numerous microorganisms with different functional traits including commensalism and parasitism. Phagocytosis facilitates the formation of symbiotic relationships, particularly since some ingested microorganisms can escape the digestion. For example, photoautotrophic algae and methanogens represent endosymbionts that greatly extend the biogeochemical functions of their hosts. Consequently, symbiotic relationships between protists and prokaryotes are widespread and often result in new ecological functions of symbiotic communities. This enables ciliates to thrive under a wide range of environmental conditions including ultraoligotrophic or anoxic habitats. We summarize the current understanding of this exciting research topic to identify the many areas in which knowledge is lacking and to stimulate future research by providing an overview on new methodologies and by formulating a number of emerging

  16. Social biases determine spatiotemporal sparseness of ciliate mating heuristics.

    Science.gov (United States)

    Clark, Kevin B

    2012-01-01

    Ciliates become highly social, even displaying animal-like qualities, in the joint presence of aroused conspecifics and nonself mating pheromones. Pheromone detection putatively helps trigger instinctual and learned courtship and dominance displays from which social judgments are made about the availability, compatibility, and fitness representativeness or likelihood of prospective mates and rivals. In earlier studies, I demonstrated the heterotrich Spirostomum ambiguum improves mating competence by effecting preconjugal strategies and inferences in mock social trials via behavioral heuristics built from Hebbian-like associative learning. Heuristics embody serial patterns of socially relevant action that evolve into ordered, topologically invariant computational networks supporting intra- and intermate selection. S. ambiguum employs heuristics to acquire, store, plan, compare, modify, select, and execute sets of mating propaganda. One major adaptive constraint over formation and use of heuristics involves a ciliate's initial subjective bias, responsiveness, or preparedness, as defined by Stevens' Law of subjective stimulus intensity, for perceiving the meaningfulness of mechanical pressures accompanying cell-cell contacts and additional perimating events. This bias controls durations and valences of nonassociative learning, search rates for appropriate mating strategies, potential net reproductive payoffs, levels of social honesty and deception, successful error diagnosis and correction of mating signals, use of insight or analysis to solve mating dilemmas, bioenergetics expenditures, and governance of mating decisions by classical or quantum statistical mechanics. I now report this same social bias also differentially affects the spatiotemporal sparseness, as measured with metric entropy, of ciliate heuristics. Sparseness plays an important role in neural systems through optimizing the specificity, efficiency, and capacity of memory representations. The present

  17. The role of ciliate protozoa in the rumen

    OpenAIRE

    Charles James Newbold; Gabriel ede la Fuente; Alejandro eBelanche; Eva eRamos-Morales; Neil eMcEwan

    2015-01-01

    First described in 1843, Rumen protozoa with their striking appearance were assumed to be important for the welfare of their host. However, despite contributing up to 50% of the bio-mass in the rumen, the role of protozoa in rumen microbial ecosystem remains unclear.Phylogenetic analysis of 18S rDNA libraries generated from the rumen of cattle, sheep, and goats has revealed an unexpected diversity of ciliated protozoa although variation in gene copy number between species makes it difficult t...

  18. SHORT TIME DYNAMICS OF CILIATE ABUNDANCE IN THE BOHAI SEA (CHINA)

    Institute of Scientific and Technical Information of China (English)

    张武昌; 王荣

    2002-01-01

    The ciliate community in the Bohai Sea (China) was studied from23 September to 7 October 1998. A hurricane struck the study area between the two grid station investigations, which were six days apart. Six tintinnid species(Favella panamensis, Leptotintinnus nordqvisti, Tintinnopsis butschlii, T. karajacensis, T. Radix and Wangiella dicollaria) were identified. Total cililate abundance in the surface layer ranged from 20 to 770 ind/l. In the first grid investigation, Tintinnopsis karajacensis dominated in the warm, low salinity waters at the Huanghe River mouth. Aloricate ciliate sp.1 dominated in the cold, high salinity waters in the northwest of the study area and the Bohai Strait. In the second grid investigation, T. Karajacensis almost disappeared. The abundance of aloricate ciliate sp.1 decreased drastically. The aloricate ciliate sp.2 dominatedat the Bohai Strait. The change of ciliate abundance may be due to the disturbance of hurricane.``

  19. Community Structure and Biodiversity of Soil Ciliates at Dongzhaigang Mangrove Forest in Hainan Island, China

    International Nuclear Information System (INIS)

    The distribution of soil ciliates in three different habitats within a typical mangrove forest in Dongzhaigang, Hainan, China was investigated. The abundance, biodiversity, and community similarity of ciliates in fresh and air-dried soil with different, physical/chemical properties were analyzed. Three Classes, 11 Orders, 34 Genera, and 70 species of ciliates were found with the first dominant group being Hypotrichida. Ciliate bio diversities followed Site B 42-), but negatively with ph and total potassium (TK). Site A and Site B and Site B and Site C showed the highest similarity in fresh and dried samples, respectively. The ubiquitous characteristics of ciliate distribution suggested their important role in food webs and nutrient cycling. The presence of Colpodida was linked with mangrove plants.

  20. Müllerian-type, cutaneous ciliated cyst in the gluteal cleft mimicking a pilonidal cyst.

    Science.gov (United States)

    Oh, Jin Sol; Bhalla, Varun K; Needham, Lance; Sharma, Suash; Pipkin, Walter L; Hatley, Robyn M; Howell, Charles G

    2014-05-01

    A cutaneous ciliated cyst is a rare entity found predominantly in the lower extremities and perineal region of young females. Although initially described by Hess in 1890, the present day term, "cutaneous ciliated cyst," was proposed by Farmer in 1978 and includes a wide array of cyst types. Despite their typical female predominance and location, many have described cutaneous ciliated cysts in males and atypical locations. In addition, Mullerian cysts in the posterior mediastinum and the retroperitoneum have been reported. To date, only 40 cases have been reported in the literature of a Mullerian-type, cutaneous ciliated cyst. Here, we report a case of 13-year-old female with one in the gluteal cleft, initially presenting as a pilonidal cyst. We also discuss the differential diagnosis of pediatric sacrococcygeal lesions and pathogenesis of a Mullerian-type, cutaneous ciliated cyst. PMID:23913265

  1. Ecological functions of ciliated protozoa in marine ecosystem:effects on accumulation of ambient ammonia

    Institute of Scientific and Technical Information of China (English)

    Xu Henglong; Song Weibo; Zhu Mingzhuang; Wang Mei; Ma Honggang; Hu Xiaozhong

    2005-01-01

    Effects of ciliated protozoa, Euplotes vannus and Uronema marinum, on accumulation of ammonia in marine waters are detected using experimental ecological method, in order to reveal the contributions and functions of ciliates to the marine ecosystem. During experiments, the concentrations of ammonia-N, and the densities of ciliates and bacteria are measured. The results reveal that ciliates can change the procedure of ammonia accumulation by their grazing activity, and maintain ambient ammonium at low levels through interrupting the stationary phase of bacteria population growth and enhancing their growth and metabolism. The present work confirms that ciliates, as bacteria-predators, play positive roles in maintaining and improving water quality in marine ecosystems, especially in intensive mariculture biotopes.

  2. The effects of different fertilizers on the ciliate communities of forests

    International Nuclear Information System (INIS)

    The influence of lime, mineral fertilizers and different composts on the ciliate communities (Protozoa: Ciliophora) of very acidified spruce forests were tested. In succession culture experiments species range, total numbers, abundance and dominance structure of the ciliate communities showed continued changes over a 90 day period. This method offers the opportunity not only to diagnose, but also to quantify effects of soil treatments. Investigations at the ARINUS-site Schluchsee (Black Forest) showed the following results: Liming led to a greater change in the ciliate communities than fertilization with magnesium-sulphate and ammonia-sulphate. Liming and treatment with compost, made from household garbage, and compost, made from chopped wood on the Beimerstetten site (Swabian Alb) led also to remarkably changes in the ciliate communities. The total ciliate numbers of the household garbage area were very low. In contrast, the ciliate community of the chopped wood compost areas were characterized by a great species number and high abundances of spirotrichuous ciliates, especially Halteria grandinella. (orig./UWA)

  3. First report of ciliate (Protozoa) epibionts on deep-sea harpacticoid copepods

    Science.gov (United States)

    Sedlacek, Linda; Thistle, David; Fernandez-Leborans, Gregorio; Carman, Kevin R.; Barry, James P.

    2013-08-01

    We report the first observations of ciliate epibionts on deep-sea, benthic harpacticoid copepods. One ciliate epibiont species belonged to class Karyorelictea, one to subclass Suctoria, and one to subclass Peritrichia. Our samples came from the continental rise off central California (36.709°N, 123.523°W, 3607 m depth). We found that adult harpacticoids carried ciliate epibionts significantly more frequently than did subadult copepodids. The reason for the pattern is unknown, but it may involve differences between adults and subadult copepodids in size or in time spent swimming. We also found that the ciliate epibiont species occurred unusually frequently on the adults of two species of harpacticoid copepod; a third harpacticoid species just failed the significance test. When we ranked the 57 harpacticoid species in our samples in order of abundance, three species identified were, as a group, significantly more abundant than expected by chance if one assumes that the abundance of the group and the presence of ciliate epibionts on them were uncorrelated. High abundance may be among the reasons a harpacticoid species carries a ciliate epibiont species disproportionately frequently. For the combinations of harpacticoid species and ciliate epibiont species identified, we found one in which males and females differed significantly in the proportion that carried epibionts. Such a sex bias has also been reported for shallow-water, calanoid copepods.

  4. Climate scaling behaviour in the dynamics of the marine interstitial ciliate community

    Science.gov (United States)

    Varotsos, Costas A.; Mazei, Yuri A.; Burkovsky, Igor; Efstathiou, Maria N.; Tzanis, Chris G.

    2016-08-01

    The present paper uses characteristics of the marine interstitial ciliate community in the White Sea intertidal sandflat during the period of 1991-2011, in order to study its long-term dynamics, investigating in particular whether it exhibits scaling behaviour into its fluctuations, which is a characteristic feature of the climate system. To this aim, a recently proposed version of the detrended fluctuation analysis is herewith employed which has been successfully applied to a wide range of simulated and physiologic time series in recent years. In case that the fluctuations of the ciliate community present self-similarity processes, an ideal field test for the currently proposed biological models will be established, allowing to evaluate their reliability. Indeed, we show for the first time that different ciliate species exhibit long-range power-law persistent correlations. This means that ciliate fluctuations in different intervals are positively correlated, obeying a power-law behaviour. Although the origin of power-law temporal evolution of ciliates should be further investigated, this finding is probably associated with the self-organized criticality of ciliates. It should be noted that the long-range correlations obtained do not imply the presence of specific cycles but rather the existence of dynamic links between long-term and short-term temporal evolution. The scaling behaviour found in marine interstitial ciliate community should be taken into account in the investigation of their response to the present or future climate change.

  5. Diverse modes of reproduction in the marine free-living ciliate Glauconema trihymene

    Directory of Open Access Journals (Sweden)

    Zufall Rebecca A

    2010-04-01

    Full Text Available Abstract Background Most free-living ciliates reproduce by equal fission or budding during vegetative growth. In certain ciliates, reproduction occurs inside the cyst wall, viz. reproductive cysts, but more complex reproductive strategies have generally been thought to be confined to parasitic or symbiotic species, e.g. Radiophrya spp. Results In addition to equal fission, asymmetric binary division and reproductive cysts were discovered in the free-living bacterivorous scuticociliate Glauconema trihymene Thompson, 1966. Asymmetric division is an innate physiological state that can be induced by sufficient food, and the higher the food concentration, the longer the asymmetric division persists. During asymmetric division, nuclear and somatic structures divide with transiently arrested cytokinesis and variable positioning of macronuclei. Phylogenetic analysis, based on the small subunit of ribosomal DNA (SSU rDNA sequences, showed that the G. trihymene isolate studied here nests with typical scuticociliates and is paraphyletic to both the symbiotic apostome and astome ciliates, some of which also produce progeny by asymmetric division. Conclusions The asymmetric division in G. trihymene has no precedent among undisturbed free-living ciliates. The coexistence of multiple modes of reproduction may represent a previously undescribed reproductive strategy for ciliates living on food patches in coastal waters. This may also be indicative of similar reproductive strategies among other polyphenic ciliates, which have not been intensively studied. Asymmetric division provides a special opportunity for studying ciliates' phenotypic plasticity and may also illuminate the origins of multicellularity.

  6. Effect of potato-onion bulb extraction on Fusarium oxysporum f. sp.niveum%分蘖洋葱鳞茎粗提物对西瓜枯萎病病原菌(Fusarium oxysporum f.sp.niveum)的影响

    Institute of Scientific and Technical Information of China (English)

    杜黎黎; 王学征; 马鸿艳; 栾非时

    2011-01-01

    采用分蘖洋葱鳞茎粗提物对西瓜枯萎病病原(Fusarium oxysporum f.sp.niveum)菌丝生长、孢子萌发、病原菌生物量及产孢量等抑制作用进行研究.结果表明,分蘖洋葱鳞茎粗提物对西瓜枯萎病病原菌的菌丝生长、孢子萌发率、病原菌生物量及产孢量均有一定的抑制作用.当分蘖洋葱鳞茎粗提物浓度为1 000 mg·mL-1时,对西瓜枯萎病病原菌的抑制作用最大,抑菌率达到69.21%.探索了分蘖洋葱鳞茎粗提物防治西瓜枯萎病的可行性,为今后指导西瓜无公害生产提供理论依据.%Effects of potato-onion extraction concentration on Fusarium oxysporum spore germination, hyphae growth, fungi biomass, and spore production were evaluated in this research. Results showed that potato-onion extraction concentration had inhibition on Fusarium oxysporum spore germination rate,fungi biomass, and spore production to some extent. The hyphae growth inhibition reached the highest value with 69.21% with treated by 1 000 mg·mL-1 of potato-onion extraction. The aim of this research was to explore the biocontrol feasibility of potato-onion extraction concentration on Fusarium oxysporum andprovide theory in practice control.

  7. Ciliated cells in vitamin A-deprived cultured hamster tracheal epithelium do divide

    International Nuclear Information System (INIS)

    The pseudostratified tracheal epithelium, composed of a heterogeneous phenotypically varying cell population, was studied with respect to the in vitro cell proliferative activity of differentiated epithelial cells. Ciliated tracheal epithelial cells so far have been considered to be terminally differentiated, nonproliferating cells. Tracheal organ cultures obtained from vitamin A-deprived Syrian Golden hamsters were cultured in a vitamin A-deficient, serum-free, hormone-supplemented medium. In vitamin A-deprived tracheal epithelium treated with physiologically active all-trans retinol and low cigarette-smoke condensate concentrations it is possible to stimulate the cell proliferation of both basal and columnar cells. Therefore, the probability of finding proliferating columnar cells was increased compared with the in vivo and the vitamin A-deprived situation in which cell proliferative activity is relatively low. In the presence of cigarette-smoke condensate in a noncytotoxic concentration, basal, small mucous granule, ciliated, and indifferent tracheal epithelial cells incorporated [methyl-3H]-thymidine into the DNA during the S phase. The finding that ciliated cells were labeled was supported by serial sections showing the same labeled ciliated cell in two section planes separated by 2 to 3 micron, without labeled epithelial cells next to the ciliated cell. Furthermore, a ciliated tracheal epithelial cell incorporating [methyl-3H]thymidine into DNA was also seen in tracheal cultures of vitamin A-deprived hamsters treated with all-trans retinol in a physiologic concentration

  8. Ciliated protozoa of two antarctic lakes: analysis by quantitative protargol staining and examination of artificial substrates

    Science.gov (United States)

    Kepner, R. L. Jr; Wharton, R. A. Jr; Coats, D. W.; Wharton RA, J. r. (Principal Investigator)

    1999-01-01

    Planktonic and artificial substrate-associated ciliates have been identified in two perennially ice-covered antarctic lakes of the McMurdo Dry Valleys. Abundances estimated by quantitative protargol staining ranged from < 5 to 31690 cells l-1, levels that are comparable to those previously obtained using other methods. Nineteen ciliate taxa were identified from these lakes, with the most frequently encountered genera being Plagiocampa, Askenasia, Monodinium, Sphaerophrya and Vorticella. The taxonomic findings compare favorably with those of previous investigators; however four previously unreported genera were observed in both Lakes Fryxell and Hoare. The variability in the depth distributions of ciliates in Lake Fryxell is explained in terms of lake physicochemical properties and ciliate prey distributions, while factors related to temporal succession in the Lake Hoare assemblage remain unexplained. Local marine or temperate zone freshwater habitats are a more likely source than the surrounding dry valleys soils for present ciliate colonists in these lakes. Although the taxonomic uncertainties require further examination, our results suggest that ciliate populations in these antarctic lakes undergo significant fluctuations and are more diverse than was previously recognized.

  9. Ciliated hepatic foregut cyst in a patient with renal cell carcinoma

    International Nuclear Information System (INIS)

    Ciliated hepatic foregut cyst is a rare condition almost always found incidentally on a computerized tomography scan or at autopsy. Rarely, portal vein compression can be a presenting finding. The cysts are usually unilocular and occur with greater frequency in males. There is a predilection for the left lobe. The cysts average 3 cm in size. We present in this case report a ciliated hepatic foregut cyst found incidentally in the setting of renal carcinoma. The patient was a man known to have a large renal mass, assumed to be cancer, and a liver mass suspicious for metastatic disease. This liver mass was cystic and upon further analysis showed ciliated epithelial lining. We describe the gross and histological appearance, as well as a brief discussion of ciliated hepatic foregut cysts. We report the first case of a patient with coexisting renal cell carcinoma and a ciliated hepatic foregut cyst. While this may represent a coincidental finding, a possibility of a neoplastic or non-neoplastic disorder associated with ciliated hepatic foregut cysts can not be completely ruled out

  10. Antifungal activity of marigold fungicide Ⅰ and its mechanism on Fusarium oxysporum f.sp.niveum%万寿菊杀菌素Ⅰ抗菌性及其对西瓜枯萎病菌作用机理的初步研究

    Institute of Scientific and Technical Information of China (English)

    范志宏; 郭春绒; 王金胜

    2012-01-01

    Marigold fungicide I was studied about the antifungal activity on several pathogenic fungi and the mechanism against Fusarium oxysporum f. sp. niveum (FON), synthetic analogue of extracts of Tagetes pat-ula root. The results showed that marigold fungicide I remarkably inhibited the mycelial growth of several pathogenic fungi, which possessed the content and time effects on Fusarium oxysporum schlecht. f. sp. niveum, Phytophthpra capsici Loen, Botrytis cinerea Pers. and Fulviafulva (Cookee) Ciferri, threshold effects on Fusarium oxysporum f. sp. capsici and Gibberella zeae( Schw. )Petch and content effects on Glomerella gossypii (Southw. )Edgertin. Marigold fungicide I was applied on FON and manifested the following findings; reduced the dry weight of mycelium, amplified membrane permeability, shortly increased chitinase activity, but no change of POD isozyme. The electrophoresis of total protein by SDS- PAGE showed that marigold fungicide I apparently affected the species and expression amounts of protein of FON.

  11. snRNA and Heterochromatin Formation Are Involved in DNA Excision during Macronuclear Development in Stichotrichous Ciliates

    OpenAIRE

    Juranek, Stefan A.; Rupprecht, Sina; Postberg, Jan; Lipps, Hans J.

    2008-01-01

    Several models for specific excision of micronucleus-specific DNA sequences during macronuclear development in ciliates exist. While the template-guided recombination model suggests recombination events resulting in specific DNA excision and reordering of macronucleus-destined sequences (MDS) guided by a template, there is evidence that an RNA interference-related mechanism is involved in DNA elimination in holotrichous ciliates. We describe that in the stichotrichous ciliate Stylonychia, snR...

  12. First report of predation of Giardia sp. cysts by ciliated protozoa and confirmation of predation of Cryptosporidium spp. oocysts by ciliate species.

    Science.gov (United States)

    Siqueira-Castro, Isabel Cristina Vidal; Greinert-Goulart, Juliane Araújo; Bonatti, Tais Rondello; Yamashiro, Sandra; Franco, Regina Maura Bueno

    2016-06-01

    Ciliated protozoa are important components of the microbial food web in various habitats, especially aquatic environments. These organisms are useful bioindicators for both environmental quality assessment and the wastewater purification process. The pathogenic parasitic protozoan species Giardia and Cryptosporidium represent a significant concern for human health, being responsible for numerous disease outbreaks worldwide. The predation of cysts and oocysts in 15 ciliate species from water and sewage samples collected in Campinas, São Paulo, Brazil were verified under laboratory conditions. The ciliated protozoan species were selected based on their mode of nutrition, and only bacterivorous and suspension-feeders were considered for the experiments. The species Blepharisma sinuosum, Euplotes aediculatus, Sterkiella cavicola, Oxytricha granulifera, Vorticella infusionum, Spirostomum minus, and Stentor coeruleus ingested cysts and oocysts, the resistance forms of Giardia spp. and Cryptosporidium spp., respectively. This is the first time that the ingestion of Giardia cysts by ciliated protozoa has been reported. These findings may contribute to a better understanding of the biological removal of these pathogens from aquatic environments. PMID:27098881

  13. High cryptic soil ciliate (Ciliophora, Hypotrichida) diversity in Australia.

    Science.gov (United States)

    Kumar, Santosh; Foissner, Wilhelm

    2016-04-01

    The diversity and distribution of soil ciliates from Australia is poorly known. Thus, we studied eight taxa, using the non-flooded Petri dish culture method, live observation, silver impregnation, detailed morphometrics, ontogenesis, and reinvestigation of type slides. At first glance, the Australian taxa looked very similar to described species, however, detailed investigations resulted in the identification of six cryptic species: Afroamphisiella multinucleata minima nov. subspec., Cladotricha similis nov. spec., Erimophrya similis nov. spec., Heterogonostomum salinarum nov. gen., nov. spec., Pseudohemisincirra arabica australiensis nov. subspec., and Pattersoniella (Pattersoniellides) australiensis nov. subgen., nov. spec. This new subgenus is unique among all described hypotrichs in having reduced some anterior paroral dikinetids the fibrillar associates of which are, however, still present. Only two of the eight taxa are possibly cosmopolitans: Apourosomoida halophilaFoissner et al., 2002 and Urosoma karinaeFoissner, 1987. This supports the moderate endemicity model, i.e., that a third of protists have a restricted distribution (Foissner, Chao and Katz 2008). PMID:26844781

  14. Tintinnid ciliates of Amundsen Sea (Antarctica plankton communities

    Directory of Open Access Journals (Sweden)

    John R. Dolan

    2013-05-01

    Full Text Available The Amundsen Sea has been described as one of the most productive and dynamic pelagic systems in Antarctica and is one of the least studied. Based on samples from 15 stations in the Amundsen Sea, we describe for the first time the composition of the tintinnid ciliate assemblage of the microzooplankton. We compared the species compositions of coastal polynya sites, where the phytoplankton communities are dominated by Phaeocystis, to those of the offshore deep water sites, which are dominated by diatoms. We found a total of 15 species. Polynya sites were dominated by a few species of tintinnids, mostly those endemic to the Southern Ocean. In contrast, the deep-water sites contained many widespread tintinnid species, which are known from a wide variety of systems as well as other areas of the Southern Ocean. We examined polymorphism known to characterize the Antarctic tintinnid species Cymatocylis affinis/convallaria and Codonellopsis gaussi. We found that the types or forms found appeared unrelated to the type of microplankton community, defined by the identity of the dominant phytoplankton taxa. However, the number of different morphotypes found at a site appeared related to the overall concentration of the species, suggesting that different morphologies, previously considered distinct species, may simply be developmental stages.

  15. Ciliate Paramecium is a natural reservoir of Legionella pneumophila

    Science.gov (United States)

    Watanabe, Kenta; Nakao, Ryo; Fujishima, Masahiro; Tachibana, Masato; Shimizu, Takashi; Watarai, Masahisa

    2016-04-01

    Legionella pneumophila, the causative agent of Legionnaires’ disease, replicates within alveolar macrophages and free-living amoebae. However, the lifestyle of L. pneumophila in the environment remains largely unknown. Here we established a novel natural host model of L. pneumophila endosymbiosis using the ciliate Paramecium caudatum. We also identified Legionella endosymbiosis-modulating factor A (LefA), which contributes to the change in life stage from endosymbiosis to host lysis, enabling escape to the environment. We isolated L. pneumophila strains from the environment, and they exhibited cytotoxicity toward P. caudatum and induced host lysis. Acidification of the Legionella-containing vacuole (LCV) was inhibited, and enlarged LCVs including numerous bacteria were observed in P. caudatum infected with L. pneumophila. An isogenic L. pneumophila lefA mutant exhibited decreased cytotoxicity toward P. caudatum and impaired the modification of LCVs, resulting in the establishment of endosymbiosis between them. Our results suggest that L. pneumophila may have a mechanism to switch their endosymbiosis in protistan hosts in the environment.

  16. Origins of learned reciprocity in solitary ciliates searching grouped 'courting' assurances at quantum efficiencies.

    Science.gov (United States)

    Clark, Kevin B

    2010-01-01

    Learning to reciprocate socially valued actions, such as cheating and cooperation, marks evolutionary advances in animal intelligence thought unequalled by even colonial microbes known to secure respective individual or group fitness tradeoffs through genetic and epigenetic processes. However, solitary ciliates, unique among microbes for their emulation of simple Hebbian-like learning contingent upon feedback between behavioral output and vibration-activated mechanosensitive Ca(2+) channels, might be the best candidates to learn to reciprocate necessary preconjugant touches perceived during complex 'courtship rituals'. Testing this hypothesis here with mock social trials involving an ambiguous vibration source, the large heterotrich ciliate Spirostomum ambiguum showed it can indeed learn to modify emitted signals about mating fitness to encourage paired reproduction. Ciliates, improving their signaling expertise with each felt vibration, grouped serial escape strategies gesturing opposite 'courting' assurances of playing 'harder to get' or 'easier to get' into separate, topologically invariant computational networks. Stored strategies formed patterns of action or heuristics with which ciliates performed fast, quantum-like distributed modular searches to guide future replies of specific fitness content. Heuristic-guided searches helped initial inferior repliers, ciliates with high initial reproductive costs, learn to sensitize their behavioral output and opportunistically compete with presumptive mating 'rivals' advertising higher quality fitness. Whereas, initial superior repliers, ciliates with low initial reproductive costs, learned with the aid of heuristics to habituate their behavioral output and sacrifice net reproductive payoffs to cooperate with presumptive 'suitors', a kind of learned altruism only before attributed to animal social intelligences. The present findings confirm that ciliates are highly competent decision makers capable of achieving paired

  17. The mitochondrial genomes of the ciliates Euplotes minuta and Euplotes crassus

    Directory of Open Access Journals (Sweden)

    Huynh Minh

    2009-11-01

    Full Text Available Abstract Background There are thousands of very diverse ciliate species from which only a handful mitochondrial genomes have been studied so far. These genomes are rather similar because the ciliates analysed (Tetrahymena spp. and Paramecium aurelia are closely related. Here we study the mitochondrial genomes of the hypotrichous ciliates Euplotes minuta and Euplotes crassus. These ciliates are only distantly related to Tetrahymena spp. and Paramecium aurelia, but more closely related to Nyctotherus ovalis, which possesses a hydrogenosomal (mitochondrial genome. Results The linear mitochondrial genomes of the hypotrichous ciliates Euplotes minuta and Euplotes crassus were sequenced and compared with the mitochondrial genomes of several Tetrahymena species, Paramecium aurelia and the partially sequenced mitochondrial genome of the anaerobic ciliate Nyctotherus ovalis. This study reports new features such as long 5'gene extensions of several mitochondrial genes, extremely long cox1 and cox2 open reading frames and a large repeat in the middle of the linear mitochondrial genome. The repeat separates the open reading frames into two blocks, each having a single direction of transcription, from the repeat towards the ends of the chromosome. Although the Euplotes mitochondrial gene content is almost identical to that of Paramecium and Tetrahymena, the order of the genes is completely different. In contrast, the 33273 bp (excluding the repeat region piece of the mitochondrial genome that has been sequenced in both Euplotes species exhibits no difference in gene order. Unexpectedly, many of the mitochondrial genes of E. minuta encoding ribosomal proteins possess N-terminal extensions that are similar to mitochondrial targeting signals. Conclusion The mitochondrial genomes of the hypotrichous ciliates Euplotes minuta and Euplotes crassus are rather different from the previously studied genomes. Many genes are extended in size compared to mitochondrial

  18. Multiple genes of apparent algal origin suggest ciliates may once have been photosynthetic.

    Science.gov (United States)

    Reyes-Prieto, Adrian; Moustafa, Ahmed; Bhattacharya, Debashish

    2008-07-01

    Plantae (as defined by Cavalier-Smith, 1981) plastids evolved via primary endosymbiosis whereby a heterotrophic protist enslaved a photosynthetic cyanobacterium. This "primary" plastid spread into other eukaryotes via secondary endosymbiosis. An important but contentious theory in algal evolution is the chromalveolate hypothesis that posits chromists (cryptophytes, haptophytes, and stramenopiles) and alveolates (ciliates, apicomplexans, and dinoflagellates) share a common ancestor that contained a red-algal-derived "secondary" plastid. Under this view, the existence of several later-diverging plastid-lacking chromalveolates such as ciliates and oomycetes would be explained by plastid loss in these lineages. To test the idea of a photosynthetic ancestry for ciliates, we used the 27,446 predicted proteins from the macronuclear genome of Tetrahymena thermophila to query prokaryotic and eukaryotic genomes. We identified 16 proteins of possible algal origin in the ciliates Tetrahymena and Paramecium tetraurelia. Fourteen of these are present in other chromalveolates. Here we compare and contrast the likely scenarios for algal-gene origin in ciliates either via multiple rounds of horizontal gene transfer (HGT) from algal prey or symbionts, or through endosymbiotic gene transfer (EGT) during a putative photosynthetic phase in their evolution. PMID:18595706

  19. Involvement of Crawling and Attached Ciliates in the Aggregation of Particles in Wastewater Treatment Plants

    Directory of Open Access Journals (Sweden)

    Lucía Arregui

    2008-01-01

    Full Text Available The biological community in activated sludge wastewater plants is organized within this ecosystem as bioaggregates or flocs, in which the biotic component is embedded in a complex matrix comprised of extracellular polymeric substances mainly of microbial origin. The aim of this work is to study the role of different floc-associated ciliates commonly reported in wastewater treatment plants-crawling Euplotes and sessile Vorticella- in the formation of aggregates. Flocs, in experiments with ciliates and latex beads, showed more compactation and cohesion among particles than those in the absence of ciliates. Ciliates have been shown to contribute to floc formation through different mechanisms such as the active secretion of polymeric substances (extrusomes, their biological activities (movement and feeding strategies, or the cysts formation capacity of some species. Staining with lectins coupled to fluorescein showed that carbohydrate of the matrix contained glucose, manose, N-acetyl-glucosamine and galactose. Protein fraction revealed over the latex beads surfaces could probably be of bacterial origin, but nucleic acids represented an important fraction of the extracellular polymeric substances of ciliate origin.

  20. Epithelial Cell Culture from Human Adenoids: A Functional Study Model for Ciliated and Secretory Cells

    Directory of Open Access Journals (Sweden)

    Claudia González

    2013-01-01

    Full Text Available Background. Mucociliary transport (MCT is a defense mechanism of the airway. To study the underlying mechanisms of MCT, we have both developed an experimental model of cultures, from human adenoid tissue of ciliated and secretory cells, and characterized the response to local chemical signals that control ciliary activity and the secretion of respiratory mucins in vitro. Materials and Methods. In ciliated cell cultures, ciliary beat frequency (CBF and intracellular Ca2+ levels were measured in response to ATP, UTP, and adenosine. In secretory cultures, mucin synthesis and secretion were identified by using immunodetection. Mucin content was taken from conditioned medium and analyzed in the presence or absence of UTP. Results. Enriched ciliated cell monolayers and secretory cells were obtained. Ciliated cells showed a basal CBF of 10.7 Hz that increased significantly after exposure to ATP, UTP, or adenosine. Mature secretory cells showed active secretion of granules containing different glycoproteins, including MUC5AC. Conclusion. Culture of ciliated and secretory cells grown from adenoid epithelium is a reproducible and feasible experimental model, in which it is possible to observe ciliary and secretory activities, with a potential use as a model to understand mucociliary transport control mechanisms.

  1. Ciliated foregut cyst of the gallbladder: a case report and literature review

    Science.gov (United States)

    Cho, Jihyoung

    2016-01-01

    Ciliated foregut cyst of gallbladder is a very rare benign cystic lesion. A 39-year-old woman was referred to our hospital after abdominal ultrasonography revealed a cystic lesion of gallbladder. On abdominal ultrasonography and computed tomography, a unilocular cystic lesion was found at right upper quadrant with attachment to the gallbladder neck. The gallbladder with cystic lesion was resected through laparoscopic cholecystectomy. The cystic lesion revealed a unilocular cyst with ciliated cuboidal or columnar epithelium and abundant goblet cells. Pathologic examination is essential to distinguish from other cystic lesions of the gallbladder and avoid unnecessary additional treatment. In the current case report, we presented the clinico-pathologic findings of the ciliated foregut cyst of the gallbladder and review of literature.

  2. Population dynamics of active and total ciliate populations in arable soil amended with wheat

    DEFF Research Database (Denmark)

    Ekelund, F.; Frederiksen, Helle B.; Ronn, R.

    2002-01-01

    population may be encysted. The factors governing the dynamics of active and encysted cells in the soil are not well understood. Our objective was to determine the dynamics of active and encysted populations of ciliates during the decomposition of freshly added organic material. We monitored, in soil...... mathematical modeling. Following the addition of fresh organic material, bacterial numbers increased more than 1,400-fold. There was a temporary increase in the number of active ciliates, followed by a rapid decline, although the size of the bacterial prey populations remained high. During this initial burst...

  3. Ciliated Foregut Cyst of the Gallbladder: A Case Report with US and CT Findings

    International Nuclear Information System (INIS)

    A ciliated foregut cyst arising from the gall bladder is very rare with only a few reports to date. In our case, an ultrasonogram (US) showed a well-demarcated hypoechoic mass containing internal hyperechoic material in the fundus of the gallbladder. The CT scans showed a poorly enhancing round soft tissue mass in the gallbladder wall lined by an enhancing intact mucosal layer. We report here on a very rare form of the ciliated foregut cyst arising from the gall bladder including ultrasound and CT image results

  4. Ciliated Foregut Cyst of the Gallbladder: A Case Report with US and CT Findings

    Energy Technology Data Exchange (ETDEWEB)

    Kim, Jun Ho; Jeon, Yong Sun; Lee, Jung Il; Han, Jee Young; Lee, Kyung Hee; Cho, Soon Gu [Inha University Hospital, Incheon (Korea, Republic of)

    2010-08-15

    A ciliated foregut cyst arising from the gall bladder is very rare with only a few reports to date. In our case, an ultrasonogram (US) showed a well-demarcated hypoechoic mass containing internal hyperechoic material in the fundus of the gallbladder. The CT scans showed a poorly enhancing round soft tissue mass in the gallbladder wall lined by an enhancing intact mucosal layer. We report here on a very rare form of the ciliated foregut cyst arising from the gall bladder including ultrasound and CT image results.

  5. Taxonomic list of ciliated protist (Protozoa: Ciliophora in Cojimar river, Havana, Cuba

    Directory of Open Access Journals (Sweden)

    Isabel de la Caridad Ymas González

    2012-09-01

    Full Text Available The taxonomic composition of ciliated protozoan’s communities from Cojimar river (Havana city was determinated, over the study period. Samples were collected from six stations located along the river. The samples were cultured in Petri dishes and were main-tained in environmental temperature and natural ilumination. Species identification was made taking into account morphological characters and Levine’s et al.(1980 taxonomic classification was used. It were identified 49 species of ciliated protozoans, which are the first records for the locality. The species are distri-buted in three classes, ten orders, eighteen families and twenty-six genera.

  6. Hyperparasitism of trichodinid ciliates on monogenean gill flukes of two marine fish.

    Science.gov (United States)

    Colorni, A; Diamant, A

    2005-06-01

    Two unusual cases of hyperparasitism of trichodinid ciliates on monogenean gill flukes are described from southern Israel (Red Sea). The first case occurred in cultured European sea bass Dicentrarchus labrax infected by Diplectanum aequans, while the second was observed in a feral devil firefish Pterois miles infected by Haliotrema sp. In both cases, the trichodinids heavily co-infested the host fish gills. The flukes were completely coated by the ciliates, which gave them a cobblestone appearance, but no damage to their tegument was apparent. Both cases are most likely a result of accidental hyperparasitism, brought about by perturbed environmental conditions. PMID:16060271

  7. 尖孢镰刀菌西瓜专化型遗传转化体系的优化%Optimization of Transformation System of Fusarium oxysporum f. sp. niveum

    Institute of Scientific and Technical Information of China (English)

    郑肖兰; 崔昌华; 刘文波; 郑服丛

    2006-01-01

    以尖镰孢霉西瓜专化型[Fusarium oxysporum Schlechtendahl ex Fries f.sp.niveum(E.F.Smith)Snyder et Hansen]为试材,以农杆菌[Agrobacterium tumefaciens(Smith & Townsend)Conn=Rhizobium radiobacter(Beijerincket van Delden)Yonng et al]的T-DNA为介导,将抗潮霉素基因插入西瓜枯萎病菌基因组中,对遗传转化体系进行优化,并对5个突变体菌株和野生型镰刀菌的最适生长温度和培养基进行筛选.结果发现,乙酰丁香酮(AS)浓度为300~400μmol/L,农杆菌OD660为0.1~0.2,野生型镰刀菌分生孢子浓度为(0.1~5.0)×106个/mL时,转化效率最高,约为500个转化子/106个分生孢子;F3181、F3280、F2192、F2195、F3179突变菌株的最适生长温度为25~28℃.

  8. Preliminary Biological Observation of Fusarium oxysporum f. Sp. Niveum (E. F. Smith) Snyder et Hansen%尖孢镰刀菌西瓜专化型菌株的生物学特性

    Institute of Scientific and Technical Information of China (English)

    郑肖兰; 崔昌华; 冯慧丽; 李锐; 郑服丛

    2006-01-01

    通过对尖孢镰刀菌西瓜专化型菌株[Fusarium oxysporum f.sp.niveum(E.F.Smith)Snyder et Hansen.]在不同培养基、不同温度、不同光照及不同的pH梯度条件下的生长速度、产孢情况等的对比,以及菌落、孢子形态特征观察,筛选出PDA、26℃、全日光照和pH 7~11为镰刀菌菌株生长和产孢最佳的培养基、温度和光照条件.并通过该菌株对几种杀菌剂的敏感性测验,发现丙环唑、烯唑醇、百菌清、代森锌4种生产常用杀菌剂对菌株的毒力具有显著差异,其中烯唑醇对该菌株的毒力最强.

  9. Isolation and in vitro cultivation of the fibrolytic rumen ciliate Eremoplastron (Eudiplodinium) dilobum.

    Science.gov (United States)

    Miltko, Renata; Pietrzak, Marta; Bełżecki, Grzegorz; Wereszka, Krzysztof; Michałowski, Tadeusz; Hackstein, Johannes H P

    2015-02-01

    The rumen ciliate Eremoplastron dilobum was isolated from sheep rumen fluid and cultivated in vitro as a species population. Four different salt solutions were used to prepare the culture media. However, only the "Artificial rumen fluid" composed of (g/L): K2HPO4-3.48, NaHCO3-2.1, NaCl-0.76, CaCl2×6H2O-0.33, CH3COONa-6.12, MgCl2×6H2O-0.3, Na2HPO4-1.71, NaHPO4×H2O-1.01 and distilled water enabled cultivation of this species for over 56 weeks. The protozoa were able to grow in a medium consisting of culture salt solution and powdered meadow hay (0.6mg/ml per d). The addition of wheat gluten did not increase the population density of E. dilobum whereas the supplemented crystalline cellulose and/or barley flour improved the growth of ciliates (Pdensity of the ciliate population. The recommended food consisted of meadow hay, wheat gluten, crystalline cellulose and barley flour when supplied in the proportions of 0.6, 0.16, 0.12 and 0.12mg/mL per day. We observed morphological variation of the ciliates, involving partial or complete reduction of the caudal lobes. PMID:25660229

  10. Ciliated Adenosquamous Carcinoma: Expanding the Phenotypic Diversity of Human Papillomavirus-Associated Tumors.

    Science.gov (United States)

    Radkay-Gonzalez, Lisa; Faquin, William; McHugh, Jonathan B; Lewis, James S; Tuluc, Madalina; Seethala, Raja R

    2016-06-01

    This study describes a unique subset of ciliated, human papillomavirus (HPV) related, adenosquamous carcinomas (AsqCA) of the head and neck that in contrast to most AsqCA, often show areas with lower grade cytonuclear features. They are comprised of largely non-keratinizing squamous cell carcinoma components with cystic change, gland formation, mucin production, and cilia in tumor cells. Seven cases of ciliated AsqCA were retrieved. Site distribution was as follows: palatine tonsil-3/7, base of tongue-1/7, and neck (unknown primary site)-3/7. Despite the occasional resemblance to mucoepidermoid carcinoma (MEC), the tumors showed focal keratinizing morphology and atypia, and all tumors were negative for MAML2 rearrangements. Oropharyngeal and neck tumors were uniformly p16 positive and showed punctate staining by in situ hybridization for high risk HPV DNA. There were two distant metastases (lung), and one tumor related death. Thus, ciliated AsqCA are HPV-associated lesions that pose unique pitfalls, closely mimicking MEC and other salivary gland tumors. These tumors add to the list of those which defy the dogma that ciliated epithelium always equates to a benign process. PMID:26411881

  11. Modeling the distribution of ciliate protozoa in the reticulo-rumen using linear programming

    NARCIS (Netherlands)

    Hook, S.E.; Dijkstra, J.; Wright, A.G.; McBride, B.W.; France, J.

    2012-01-01

    The flow of ciliate protozoa from the reticulo-rumen is significantly less than expected given the total density of rumen protozoa present. To maintain their numbers in the reticulo-rumen, protozoa can be selectively retained through association with feed particles and the rumen wall. Few mathematic

  12. Ciliates and their picophytoplankton-feeding activity in a high altitude warm-monomictic saline lake

    Czech Academy of Sciences Publication Activity Database

    Peštová, D.; Macek, Miroslav; Pérez, M. E. M.

    2008-01-01

    Roč. 44, č. 1 (2008), s. 13-25. ISSN 0932-4739 Institutional research plan: CEZ:AV0Z60170517 Keywords : ciliates * autotrophic picoplankton * feeding rates Subject RIV: EH - Ecology, Behaviour Impact factor: 1.000, year: 2008

  13. Ciliated muconodular papillary tumors of the lung: a clinicopathologic analysis of 10 cases.

    Science.gov (United States)

    Kamata, Tsugumasa; Yoshida, Akihiko; Kosuge, Tomoo; Watanabe, Shun-Ichi; Asamura, Hisao; Tsuta, Koji

    2015-06-01

    Ciliated muconodular papillary tumors (CMPTs) are rare peripheral nodules of the lung first described in 2002. Because of their rarity and nonstandardized diagnostic terminology, CMPTs have been poorly recognized among pathologists. To better characterize these lesions, we undertook a detailed clinicopathologic and immunohistochemical study of 10 archival cases. Ten CMPTs occurred in 7 men and 3 women with a median age of 62 years. All were small peripheral nonendobronchial nodules with a mean diameter of 1.0 cm. All but 1 tumor were incidentally detected by computed tomography-based screening, all of which were radiologically interpreted as adenocarcinomas. Although limited surgery treated all but 1 CMPT, they followed a benign course with no recurrence at a mean follow-up of 43 months (range: 2 to 88 mo). Histologically, CMPTs showed glandular and/or papillary architecture, comprising a vaguely organized mixture of nonatypical ciliated columnar cells, mucous cells, and basal cells, often enveloped by copious intra-alveolar mucin. Micropapillary tufts of ciliated cells and seemingly discontinuous growth along alveolar walls were occasionally present, mimicking adenocarcinomas. Ciliated cells and basal cells were immunopositive for TTF-1 and p40, respectively, whereas mucous cells lacked HNF4α expression. CMPTs are rare, likely benign, underrecognized processes of the lung that should be distinguished from adenocarcinomas. PMID:25803171

  14. Multiple genes of apparent algal origin suggest ciliates may once have been photosynthetic

    OpenAIRE

    Reyes-Prieto, Adrian; Moustafa, Ahmed; Bhattacharya, Debashish

    2008-01-01

    Plantae (sensu Cavalier-Smith 1981) [1] plastids evolved via primary endosymbiosis whereby a heterotrophic protist enslaved a photosynthetic cyanobacterium. This 'primary' plastid spread into other eukaryotes via secondary endosymbiosis. An important but contentious theory in algal evolution is the chromalveolate hypothesis that posits chromists (cryptophytes, haptophytes, and stramenopiles) and alveolates (ciliates, apicomplexans, and dinoflagellates) share a common ancestor that contained a...

  15. Bottom-up versus top-down effects on ciliate community composition in four eutrophic lakes (China).

    Science.gov (United States)

    Li, Jing; Chen, Feizhou; Liu, Zhengwen; Zhao, Xiuxia; Yang, Kun; Lu, Wenxuan; Cui, Kai

    2016-04-01

    Previous studies have shown that ciliate plankton is generally controlled by food resources (e.g., algae) and predators (e.g., metazooplankton). Among lakes with similar trophic levels but different distributions of phyto- and metazooplankton, the main forces acting on ciliate assemblages may be different. We investigated the relationship between ciliate communities and bottom-up versus top-down variables based on a survey of four subtropical eutrophic lakes (China). Two of the lakes (Chaohu, Taihu) are located on the Mid-lower Yangtze Plain near sea level, and the other two (Dianchi, Xingyunhu) on the Yunnan-Kweichow Plateau at 1700m above sea level. Blooms of cyanobacteria developed during summer in Lakes Chaohu and Taihu and throughout the year in Lakes Dianchi and Xingyunhu. Ciliate functional feeding groups differed significantly between lakes. The results of canonical correspondence analysis (CCA) and variation partitioning showed that cyanobacteria significantly influence ciliate species, whereas 'edible' algae (cryptophytes, diatoms) and cladocerans were the important variables in explaining the ciliate community structure of Lakes Dianchi and Xingyunhu compared with Lakes Taihu and Chaohu. Our results highlight the importance of consistent cyanobacterial blooms in shaping the ciliate community in subtropical eutrophic shallow lakes by interacting with top-down and bottom-up factors. PMID:26773905

  16. Bose-Einstein condensates form in heuristics learned by ciliates deciding to signal 'social' commitments.

    Science.gov (United States)

    Clark, Kevin B

    2010-03-01

    Fringe quantum biology theories often adopt the concept of Bose-Einstein condensation when explaining how consciousness, emotion, perception, learning, and reasoning emerge from operations of intact animal nervous systems and other computational media. However, controversial empirical evidence and mathematical formalism concerning decoherence rates of bioprocesses keep these frameworks from satisfactorily accounting for the physical nature of cognitive-like events. This study, inspired by the discovery that preferential attachment rules computed by complex technological networks obey Bose-Einstein statistics, is the first rigorous attempt to examine whether analogues of Bose-Einstein condensation precipitate learned decision making in live biological systems as bioenergetics optimization predicts. By exploiting the ciliate Spirostomum ambiguum's capacity to learn and store behavioral strategies advertising mating availability into heuristics of topologically invariant computational networks, three distinct phases of strategy use were found to map onto statistical distributions described by Bose-Einstein, Fermi-Dirac, and classical Maxwell-Boltzmann behavior. Ciliates that sensitized or habituated signaling patterns to emit brief periods of either deceptive 'harder-to-get' or altruistic 'easier-to-get' serial escape reactions began testing condensed on initially perceived fittest 'courting' solutions. When these ciliates switched from their first strategy choices, Bose-Einstein condensation of strategy use abruptly dissipated into a Maxwell-Boltzmann computational phase no longer dominated by a single fittest strategy. Recursive trial-and-error strategy searches annealed strategy use back into a condensed phase consistent with performance optimization. 'Social' decisions performed by ciliates showing no nonassociative learning were largely governed by Fermi-Dirac statistics, resulting in degenerate distributions of strategy choices. These findings corroborate

  17. Anaerobic soil disinfestation, an effective way to control watermelon fusarium wilt caused by Fusarium oxysporum f. sp. niveum%厌氧还原土壤灭菌法抑制西瓜专化型尖孢镰刀菌

    Institute of Scientific and Technical Information of China (English)

    周开胜

    2015-01-01

    西瓜枯萎病是由西瓜专化型尖孢镰刀菌引起的世界性土传病害,目前尚未找到抑制尖孢镰刀菌的最有效方法。本研究用厌氧还原土壤灭菌法处理西瓜连作土壤,试验设8个处理:不添加物料不加水处理(对照)、只淹水处理、少量稻草+淹水处理、高量稻草+淹水处理、少量玉米秸秆+淹水处理、高量玉米秸秆+淹水处理、高量稻草+饱和水处理、高量玉米秸秆+饱和水处理,测定处理后土壤的理化性质及土壤中可培养微生物数量。结果显示:添加有机物料加水处理的土壤氧化还原电位、尖孢镰刀菌数及NO-3-N、SO2-4含量均显著低于对照,且其pH值均显著高于对照,而电导率和NH+4-N含量与对照相比变化不显著。可见,厌氧还原土壤灭菌法可有效调节土壤理化性质,抑制西瓜专化型尖孢镰刀菌。%Watermelon fusarium wilt is a typical worldwide soil-borne disease induced by Fusarium oxysporum f. sp. niveum, and no effective method has been found to control it. In this study, anaerobic soil disinfestations was applied to treat continuous cropping watermelon soil. Eight treatments were set in the experiment, which were no materials and no water( con-trol) , flooding only, a small amount of rice straw plus flooding, a large amount of rice straw plus flooding, a small amount of corn stalk plus flooding, a large amount of corn stalk plus flooding, a large amount of rice straw plus saturated water, and a large amount of corn stalk plus saturated water. The physical and chemical parameters and microbial quantity in the treated soil were determined. The results showed that oxidation-reduction potential, population of Fusarium oxysporum and concentra-tions of NO-3-N and SO2-4 in the treated soils were significantly lower than those in control, whereas the pH values were signifi-cantly higher. The electrical conductivity and NH+4-N concentrations were close. This study indicated

  18. Colonization of periphytic ciliated protozoa on an artificial substrate in mariculture waters with notes on responses to environmental factors

    Institute of Scientific and Technical Information of China (English)

    Jiqiu Li; Henglong Xu; Xiaofeng Lin; Weibo Song

    2009-01-01

    Colonization of periphytic ciliates and their usefulness for monitoring water quality were evaluated using the glass slide method in two enclosed mariculture ponds used to culture crab larva and in a natural seawater reservoir. The results revealed that (1) the ciliate species composition and colonizing process differed between the culturing ponds and the natural reservoir and (2) the dominant ciliate species showed a greater distribution in terms of both the abundance and the occurrence frequency. This study also demonstrated that structural parameters were strongly related to water conditions. For example, the abundance was positively associated with NO-3-N and soluble reactive phosphate (P < 0.05), whereas the species number, species diversity and evenness were negatively correlated with nutrients (e.g. NO-3N and NH3-N) and temperature (P < 0.05). These findings support the evidence that periphytic ciliates are useful bioindicators of water quality in enclosed mariculture ecosystems.

  19. Marine ciliate community in relation to eutrophication of coastal waters in the Yellow Sea

    Institute of Scientific and Technical Information of China (English)

    XU Kuidong; CHOI Joong Ki; LEI Yanli; YANG Eun Jin

    2011-01-01

    We assessed the potential of marine ciliate community as an indicator to coastal water quality using water samples collected from four stations in the Yellow Sea in the summer 2000. The four stations were characterized by different levels of pollution. The ciliate communities consisted primarily of tintinnids and aloricate ciliates that were <30 μm. A total of 78 species were classified: 55 species at Station 2, 51 species each at Stations 1 and 4, and 47 species at Station 3. The mean number of species at each site was 29.2±2.0 (Station 1), 28.5±2.9 (Station 2), 27.8±1.7 (Station 3), and 24.5±2.3 (Station 4). The abundance was highly variable: 19 331±11 187 ind./L at Station 1, 7 960±5 639 ind./L at Station 2, 29 015± 12 999 ind./L at Station 3, and 8 190±4 658 ind./L at Station 4. Our results suggest that neither the simple chemical analysis (e.g. chemical oxygen demand, dissolved inorganic nitrogen, and phosphate) nor the eutrophication/pollution index adequately described the water quality at the four stations. The same was true of the number of species and their abundance, both of which had no correlation with the chemical indices. In contrast, Margalef's diversity index values (3.12 at Station 2, 2.89 at Station 1, and 2.64 at Stations 3 and 4) generally discriminated the water quality status of the four stations. The difference in water quality among the stations was strongly supported by the pattern of species richness (i.e. the total number of species) of ciliates at each station. Our evaluation was consistent with the results of long-term water quality monitoring at the four stations. With increasing eutrophication, we observed also a compositional and functional shift in the ciliate assemblages from algivorous oligotrich/choreotrich to nonselective-omnivorous gymnostomatids to bacterivorous-detrivorous scuticociliatids. Thus, ciliates may be used to indicate the coastal water quality status of a given site.

  20. 西瓜枯萎菌拮抗细菌的筛选、鉴定及防效测定%Screening and Identification of Antagonistic Bacteria Strains against Fusarium oxysporum f.sp.niveum

    Institute of Scientific and Technical Information of China (English)

    岳菊; 刘邮洲; 张荣胜; 刘永锋; 王治林; 陈志谊

    2011-01-01

    In this paper,1050 bacterial strains were isolated from the rhizosphere soil and roots of watermelon,cucumber,and eggplant in Inner Mongolia,Xinjiang,Anhui,Henan,Jiangsu and Jiangxi province.Among the tested strains,9 strains could inhibit mycelia growth of Fusarium oxysporum f.sp.niveum,Alternaria brassicicola,Phytophthora capsici and Botrytis cinerea.Two strains,NBT-15 and PL-82,had strong inhibitory activity against F.oxysporum,with inhibition rate of 60.5% and 55.3%,respectively.In pot experiment,control efficiency of NBT-15 and PL-82 against F.oxysporum after 30 days' treatment were 80.4% and 75.6%,respectively.Based on their morphology,physiological and biochemical characteristics and 16S rDNA sequence,the strains NBT-15 and pL-82 were identified as Bacillus subtilis and Pseudomonas aeruginosa,respectively.%从内蒙古、新疆、安徽、河南、江苏、江西6省的西瓜、黄瓜和茄子3种作物根际土壤和病健组织中,共获得样本64份,分离得到细菌1050株。室内抑菌活性测定结果表明:9株细菌分离物对西瓜枯萎病菌Fusariumoxysporumf.sp.niveum、甘蓝黑斑病菌Alternaria brassicicola、辣椒疫霉病菌Phytophthora capsici和番茄灰霉病菌Botrytis cinerea均具有很强的拮抗作用,其中菌株NBT-15和PL-82对西瓜枯萎病菌菌丝生长的抑制作用比较明显,抑制率分别为

  1. Preferential Feeding by the Ciliates Chilodonella and Tetrahymena spp. and Effects of These Protozoa on Bacterial Biofilm Structure and Composition▿

    OpenAIRE

    Dopheide, Andrew; Lear, Gavin; Stott, Rebecca; Lewis, Gillian

    2011-01-01

    Protozoa are important components of microbial food webs, but protozoan feeding preferences and their effects in the context of bacterial biofilms are not well understood. The feeding interactions of two contrasting ciliates, the free-swimming filter feeder Tetrahymena sp. and the surface-associated predator Chilodonella sp., were investigated using biofilm-forming bacteria genetically modified to express fluorescent proteins. According to microscopy, both ciliates readily consumed cells from...

  2. Inter-annual ciliate distribution variation within the late stratification oxycline in a monomictic lake, Lake Alchichica (Mexico)

    OpenAIRE

    Ximena Sánchez Medina; Miroslav Macek; Fernando Bautista-Reyes; Andrea Perz; Patricia Bonilla Lemus; Mario Chávez Arteaga

    2016-01-01

    noxia, and ciliates might play a very important role in the plankton community budget there. We analysed changes in the composition and biomass of the ciliate assemblage and other microbial loop components throughout the oxycline just at the end of stratification in a warm-monomictic lake, Lake Alchichica, Mexico (four samplings: 2006-2008, 2010); the results were compared with those obtained from another lake from the region, La Preciosa, sampled in 2010. Bacteria, autotrophic picoplankton (...

  3. The coupling of oligotrich ciliate populations and hydrography in the East China Sea: spatial and temporal variations

    Science.gov (United States)

    Chiang, Kuo-Ping; Lin, Chiu-Yi; Lee, Chung-Hsien; Shiah, Fuh-Kwo; Chang, Jeng

    2003-03-01

    Variations in the spatial and temporal distribution of oligotrich ciliate populations in the East China Sea were investigated during four cruises of the R/V Ocean Researcher I between December 1997 and October 1998. Over the entire continental shelf, a seasonal cycle was found with a distinct 3-5-fold increase in the abundance of oligotrich ciliates in summer. This increase appeared to be induced by the tremendous summertime runoff from the Changjiang. A radial-type spatial distribution pattern also was observed in summer, with population densities higher toward the Changjiang plume but highest of all in the margins of the plume. In spring and fall, the spatial distribution of the oligotrich ciliates was closely correlated to the abundance of cyanobacterium Synechococcus. In summer in the plume region, mixotrophic ciliates accounted for over 50% of the total ciliate population, compared to less than 30% outside the plume or that in other seasons. We propose a model in which these ciliates constitute part of the pathway through which the particulate and dissolved organic carbon in the runoff water is incorporated into the oceanic food web.

  4. THE TELOMERES OF REPLICATING MACRONUCLEAR DNA-MOLECULES OF THE HYPOTRICHOUS CILIATE STYLONYCHIA LEMNAE

    OpenAIRE

    Juranek, Stefan; Jonsson, Franziska; Maercker, Christian; Lipps, Hans

    2000-01-01

    While the telomeres of higher eukaryotic cells show heterogenity in their length no such length heterogenity is observed in the macronuclear DNA of hypotrichous ciliates. Since the analysis of the telomere structure of replicating DNA molecules might give an insight in the mechanisms of telomere length regulation Stylonychia cell cultures were synchronized, the replicating DNA was labeled with BrdU and isolated by immuno-precipitation. The 3as well as the 5-end of these replicating DNA was la...

  5. Bioassay of genotoxic effects of environmental particles in a feeding ciliate.

    OpenAIRE

    Smith-Sonneborn, J; Palizzi, R A; McCann, E A; Fisher, G L

    1983-01-01

    The ciliated protozoan, Paramecium, can be used to quantitate cytotoxic and genotoxic effects of ingested complex environmental particles. Cytotoxicity is quantitated by the increased proportion of treated versus control cells which do not retain their capacity for normal cell replication. Genotoxic effects are assessed by the increased fraction of nonviable offspring from treated versus control parent cells after the self-fertilization process of autogamy. Since these cells ingest nonnutrien...

  6. Ciliates learn to diagnose and correct classical error syndromes in mating strategies

    Directory of Open Access Journals (Sweden)

    Kevin Bradley Clark

    2013-08-01

    Full Text Available Preconjugal ciliates learn classical repetition error-correction codes to safeguard mating messages and replies from corruption by rivals and local ambient noise. Because individual cells behave as memory channels with Szilárd engine attributes, these coding schemes also might be used to limit, diagnose, and correct mating-signal errors due to noisy intracellular information processing. The present study, therefore, assessed whether heterotrich ciliates effect fault-tolerant signal planning and execution by modifying engine performance, and consequently entropy content of codes, during mock cell-cell communication. Socially meaningful serial vibrations emitted from an ambiguous artificial source initiated ciliate behavioral signaling performances known to advertise mating fitness with varying courtship strategies. Microbes, employing calcium-dependent Hebbian-like decision making, learned to diagnose then correct error syndromes by recursively matching Boltzmann entropies between signal planning and execution stages via power or refrigeration cycles. All eight serial contraction and reversal strategies incurred errors in entropy magnitude by the execution stage of processing. Absolute errors, however, subtended expected threshold values for single bit-flip errors in three-bit replies, indicating coding schemes protected information content throughout signal production. Ciliate preparedness for vibrations selectively and significantly affected the magnitude and valence of Szilárd engine performance during modal and nonmodal strategy corrective cycles. But entropy fidelity for all replies mainly improved across learning trials as refinements in engine efficiency. Fidelity neared maximum levels for only modal signals coded in resilient three-bit repetition error-correction sequences. Together, these findings demonstrate microbes can elevate survival/reproductive success by learning to implement classical fault-tolerant information processing in

  7. A Rab-based view of membrane traffic in the ciliate Tetrahymena thermophila

    OpenAIRE

    Turkewitz, Aaron P.; Bright, Lydia J

    2011-01-01

    Biologists have long recognized that some single-celled organisms show striking morphological and behavioral complexity, and details of the genetic underpinnings can be mined from the trove of newly-sequenced genomes. Ciliates, among which Tetrahymena thermophila and Paramecium tetraurelia have received most attention, provide clear examples of a lineage in which, as in animal cells, the core pathways of membrane traffic have undergone dramatic expansion and elaboration to facilitate multiple...

  8. Propulsion of swimming microrobots inspired by metachronal waves in ciliates: from biology to material specifications

    OpenAIRE

    Palagi, Stefano; Jager, Edwin; Mazzolai, Barbara; Beccai, Lucia

    2013-01-01

    The quest for swimming microrobots originates from possible applications in medicine, especially involving navigation in bodily fluids. Swimming microorganisms have become a source of inspiration because their propulsion mechanisms are effective in the low-Reynolds number regime. In this study, we address a propulsion mechanism inspired by metachronal waves, i.e. the spontaneous coordination of cilia leading to the fast swimming of ciliates. We analyse the biological mechanism (referring to i...

  9. Taxonomic list of ciliated protist (Protozoa: Ciliophora) in Cojimar river, Havana, Cuba

    OpenAIRE

    Isabel de la Caridad Ymas González; Dania Prieto Trueba

    2012-01-01

    The taxonomic composition of ciliated protozoan’s communities from Cojimar river (Havana city) was determinated, over the study period. Samples were collected from six stations located along the river. The samples were cultured in Petri dishes and were main-tained in environmental temperature and natural ilumination. Species identification was made taking into account morphological characters and Levine’s et al.(1980) taxonomic classification was used. It were identified 49 sp...

  10. Myosin Id is required for planar cell polarity in ciliated tracheal and ependymal epithelial cells.

    Science.gov (United States)

    Hegan, Peter S; Ostertag, Eric; Geurts, Aron M; Mooseker, Mark S

    2015-10-01

    In wild type (WT) tracheal epithelial cells, ciliary basal bodies are oriented such that all cilia on the cell surface beat in the same upward direction. This precise alignment of basal bodies and, as a result, the ciliary axoneme, is termed rotational planar cell polarity (PCP). Rotational PCP in the multi-ciliated epithelial cells of the trachea is perturbed in rats lacking myosin Id (Myo1d). Myo1d is localized in the F-actin and basal body rich subapical cortex of the ciliated tracheal epithelial cell. Scanning and transmission electron microscopy of Myo1d knock out (KO) trachea revealed that the unidirectional bending pattern is disrupted. Instead, cilia splay out in a disordered, often radial pattern. Measurement of the alignment axis of the central pair axonemal microtubules was much more variable in the KO, another indicator that rotational PCP is perturbed. The asymmetric localization of the PCP core protein Vangl1 is lost. Both the velocity and linearity of cilia-driven movement of beads above the tracheal mucosal surface was impaired in the Myo1d KO. Multi-ciliated brain ependymal epithelial cells exhibit a second form of PCP termed translational PCP in which basal bodies and attached cilia are clustered at the anterior side of the cell. The precise asymmetric clustering of cilia is disrupted in the ependymal cells of the Myo1d KO rat. While basal body clustering is maintained, left-right positioning of the clusters is lost. PMID:26446290

  11. Methods for the cultivation of ciliated protozoa from the large intestine of horses.

    Science.gov (United States)

    Bełżecki, Grzegorz; Miltko, Renata; Michałowski, Tadeusz; McEwan, Neil R

    2016-01-01

    This paper describes cultivation methods for ciliates from the digestive tract of horses. Members of three different genera were successfully grown in vitro for short periods of time. However, only cells belonging to the genus Blepharocorys, which resides in the horse's large intestine, were maintained for longer periods. This Blepharocorys culture was successfully grown in vitro after inoculation of freshly excreted horse faeces in culture medium containing a population of bacteria. The ciliates survived for over six months, and the density of their population varied between 1.7 × 10(3) and 2.4 × 10(3) cells mL(-1). Favourable conditions for the prolonged cultivation of this ciliate were observed when the medium was prepared by mixing horse faeces and 'caudatum' salt solution in a 1:1 V/V ratio together with food (60% powdered meadow hay, 16% wheat gluten, 12% barley flour and 12% microcrystalline cellulose) supplied as 0.20 mg mL(-1) culture per day. PMID:26684192

  12. Ciliated foregut cyst in the triangle of Calot: the first report.

    Science.gov (United States)

    Al Beteddini, Osama S; Amra, Nasir K; Sherkawi, Emad

    2016-12-01

    Ciliated foregut cysts are rare anomalies arising from remnants of aberrant embryological development. Around 100 reports on the presence of these congenital masses in the tracheobronchial tree, mediastinum, liver, pancreas and, rarely, the gallbladder have been described. In this article, the case of a 33-year-old woman, who was operated for a laparoscopic cholecystectomy, is presented. During the dissection of the triangle of Calot, a cystic mass, attached to the common hepatic duct, was discovered incidentally. This cyst was dissected off the hepatic duct, and no communication between both structures was found. The histopathological diagnosis was consistent with a ciliated foregut cyst. The postoperative course was uneventful. After reviewing the literature on this pathological entity, we found that this is the first report of a ciliated foregut cyst that is located in the triangle of Calot and found separate from the biliary structures, the gallbladder and the liver. We present a review of the literature on this entity, discussing diagnostic measures and therapeutic options. PMID:26943696

  13. Declines in both redundant and trace species characterize the latitudinal diversity gradient in tintinnid ciliates.

    Science.gov (United States)

    Dolan, John R; Yang, Eun Jin; Kang, Sung-Ho; Rhee, Tae Siek

    2016-09-01

    The latitudinal diversity gradient is a well-known biogeographic pattern. However, rarely considered is how a cline in species richness may be reflected in the characteristics of species assemblages. Fewer species may equal fewer distinct ecological types, or declines in redundancy (species functionally similar to one another) or fewer trace species, those occurring in very low concentrations. We focused on tintinnid ciliates of the microzooplankton in which the ciliate cell is housed inside a species-specific lorica or shell. The size of lorica oral aperture, the lorica oral diameter (LOD), is correlated with a preferred prey size and maximum growth rate. Consequently, species of a distinct LOD are distinct in key ecologic characteristics, whereas those of a similar LOD are functionally similar or redundant species. We sampled from East Sea/Sea of Japan to the High Arctic Sea. We determined abundance distributions of biological species and also ecological types by grouping species in LOD size-classes, sets of ecologically similar species. In lower latitudes there are more trace species, more size-classes and the dominant species are accompanied by many apparently ecologically similar species, presumably able to replace the dominant species, at least with regard to the size of prey exploited. Such redundancy appears to decline markedly with latitude in assemblages of tintinnid ciliates. Furthermore, the relatively small species pools of the northern high latitude assemblages suggest a low capacity to adapt to changing conditions. PMID:26990873

  14. Effect of adrenergic stimulation on clearance from small ciliated airways in healthy subjects.

    Science.gov (United States)

    Svartengren, K; Philipson, K; Svartengren, M; Camner, P

    1998-01-01

    Mucociliary transport is an important clearance mechanism of larger airways, but in the smallest ciliated airways (bronchioles) it may be less effective. The present study aimed at investigating whether clearance from the bronchioles in subjects with healthy airways was stimulated by an adrenergic agonist (terbutaline sulphate). Tracheobronchial clearance was studied twice in 10 healthy subjects after inhalation of 6-micron (aerodynamic diameter) monodisperse Teflon particles labeled with 111In. At one exposure, oral treatment with terbutaline sulphate, known to stimulate clearance in large airways, began immediately after inhalation of the particles. The other exposure was a control measurement. The particles were inhaled at an extremely slow flow, 0.05 L/s, which gave deposition mainly in the small ciliated airways (bronchioles). Lung retention was measured at 0, 24, 48, and 72 h. Clearance was significant every 24 h for both exposures (p terbutaline sulphate, the subjects' pulse rates tended to be higher, but clearance rates did not increase. We found, as expected, no significant correlation between lung retention and lung function in either exposure. This study shows that an adrenergic agonist does not significantly influence overall clearance from the bronchiolar region in healthy subjects. This suggests that mucociliary transport does not significantly contribute to clearance from the smallest ciliated airways. Other mechanisms may be more important for the transportation of mucus from these airways. PMID:9555573

  15. Unfolding Thermodynamics of Cysteine-Rich Proteins and Molecular Thermal-Adaptation of Marine Ciliates

    Directory of Open Access Journals (Sweden)

    Giorgia Cazzolli

    2013-11-01

    Full Text Available Euplotes nobilii and Euplotes raikovi are phylogenetically closely allied species of marine ciliates, living in polar and temperate waters, respectively. Their evolutional relation and the sharply different temperatures of their natural environments make them ideal organisms to investigate thermal-adaptation. We perform a comparative study of the thermal unfolding of disulfide-rich protein pheromones produced by these ciliates. Recent circular dichroism (CD measurements have shown that the two psychrophilic (E. nobilii and mesophilic (E. raikovi protein families are characterized by very different melting temperatures, despite their close structural homology. The enhanced thermal stability of the E. raikovi pheromones is realized notwithstanding the fact that these proteins form, as a rule, a smaller number of disulfide bonds. We perform Monte Carlo (MC simulations in a structure-based coarse-grained (CG model to show that the higher stability of the E. raikovi pheromones is due to the lower locality of the disulfide bonds, which yields a lower entropy increase in the unfolding process. Our study suggests that the higher stability of the mesophilic E. raikovi phermones is not mainly due to the presence of a strongly hydrophobic core, as it was proposed in the literature. In addition, we argue that the molecular adaptation of these ciliates may have occurred from cold to warm, and not from warm to cold. To provide a testable prediction, we identify a point-mutation of an E. nobilii pheromone that should lead to an unfolding temperature typical of that of E. raikovi pheromones.

  16. Effects of Seasonality and Dispersal on the Ciliate Community Inhabiting Bromeliad Phytotelmata in Riparian Vegetation of a Large Tropical River.

    Science.gov (United States)

    Buosi, Paulo R B; Cabral, Adalgisa F; Utz, Laura R P; Vieira, Ludgero C G; Velho, Luiz F M

    2015-01-01

    This study evaluated the influence of rainfall amount on the abundance, species richness, and species occurrence and abundance distribution of the ciliate community associated with the bromeliad Aechmea distichantha. The plants were collected from a rock wall of about 10-km long at the left bank of Paraná River. We assessed the effects of both spatial and temporal variables on the community attributes, as well as whether plants geographically closer have a similar abundance distribution and species composition. The ciliate community was substantially distinct between both hydrological periods, with greater values of species richness and abundance in the rainy period. No spatial structuring (differences in the species occurrence and abundance distribution among strata) or geographical similarity (similarity in ciliate species composition among the plants) was found. Multiple regression analysis showed a positive relationship only between the ciliate abundances and water volumes for both periods. Although few of the formulated predictions were confirmed, our study provides valuable information on the ecological aspects of the ciliate community inhabiting bromeliad phytotelmata. PMID:25963550

  17. ON THE MARINE CILIATE, Pseudocohnilembus hargisi (PROTOZOA,CILIOPHORA, SCUTICOCILIATIDA) WITH COMPARISON OF ITS RELATED SPECIES

    Institute of Scientific and Technical Information of China (English)

    龚骏; 马宏伟; 宋微波

    2002-01-01

    The living morphology, nuclear apparatus, infraciliature and silverline system o f the poorly-known ciliate Pseudocohnilembus hargisi Evans & Thompson, 1964 , collected from a shrimp culture pond in Qingdao, China, were examined by obser vation of the live specimen; and by the pyridinated carbonate method and Chatton -Lwoff technique. The main characteristics: 13-14 (usually 13) longitudinal or slightly spirally arranged somatic kineties; single contractile vacuole with usually 2 ( 1-2) pores at posterior ends of the fourth and fifth somatic kineties to the rig ht of the buccal cavity. Several related congeners were compared and morphometri cally tabulated.

  18. Using Sorting by Reversal: Breakpoint Graph for Gene Assembly in Ciliates

    Science.gov (United States)

    Brijder, Robert; Jan Hoogeboom, Hendrik

    2007-09-01

    The theory of gene assembly in ciliates has much in common with the theory of sorting by reversal. Both model processes that are based on splicing, and have a fixed begin and end product. The main difference is the type of splicing operations used to obtain the end product from the begin product. In this overview paper we show that the concept of breakpoint graph, known from the theory of sorting by reversal, has many uses in the theory of gene assembly. Our aim is to present the material in an intuitive and informal manner to allow for an efficient introduction into the subject.

  19. Natural variation in methane emission of sheep fed on a lucerne pellet diet is unrelated to rumen ciliate community type.

    Science.gov (United States)

    Kittelmann, Sandra; Pinares-Patiño, Cesar S; Seedorf, Henning; Kirk, Michelle R; McEwan, John C; Janssen, Peter H

    2016-02-01

    Only limited information is available on the roles of different rumen ciliate community types, first described by Eadie in 1962, in enteric methane (CH4) formation by their ruminant hosts. If the different types were differentially associated with CH4 formation, then ciliate community typing could be used to identify naturally high and low CH4-emitting animals. Here we measured the CH4 yields [g CH4 (kg feed dry matter intake, DMI)- 1] of 118 sheep fed a standard pelleted lucerne diet at two different times, at least 2 weeks apart. There were significant differences (P sheep selected as high [16.7 ± 1.5 g CH4 (kg DMI)- 1] and low emitters [13.3 ± 1.5 g CH4 (kg DMI)- 1]. A rumen sample was collected after each of the two measurements, and ciliate composition was analysed using barcoded 454 Titanium pyrosequencing of 18S rRNA genes. The genera found, in order of mean relative abundance, were Epidinium, Entodinium, Dasytricha, Eudiplodinium, Polyplastron, Isotricha and Anoplodinium-Diplodinium, none of which was significantly correlated with the CH4 emissions ranking associated with the rumen sample. Ciliate communities naturally assembled into four types (A, AB, B and O), characterized by the presence and absence of key genera. There was no difference in CH4 yield between sheep that harboured different ciliate community types, suggesting that these did not underlie the natural variation in CH4 yields. Further research is needed to unravel the nature of interactions between ciliate protozoa and other rumen micro-organisms, which may ultimately lead to contrasting CH4 emission phenotypes. PMID:26813792

  20. Evaluation of Enrichment Protocols for Bacterial Endosymbionts of Ciliates by Real-Time PCR.

    Science.gov (United States)

    Castelli, Michele; Lanzoni, Olivia; Rossi, Leonardo; Potekhin, Alexey; Schrallhammer, Martina; Petroni, Giulio

    2016-06-01

    Large-scale studies on obligate bacterial endosymbionts may frequently require preliminary purification and enrichment protocols, which are often elaborate to set up and to evaluate, especially if the host organism is a protist. The purpose of this study was to develop a real-time PCR-based strategy and employ it for assessing two of such enrichment protocols for Holospora caryophila, hosted by the ciliate Paramecium. Four SSU rRNA gene-targeted real-time PCR assays were designed, which allowed to compare the amount of H. caryophila to other organisms, namely the host, its food bacterium (Raoultella planticola), and free-living bacteria present in the culture medium. By the use of the real-time PCR assays in combination, it was possible to conclude that the "cell fractionation" protocol was quite successful in the enrichment of the symbiont, while the "Percoll gradient" protocol will need further refinements to be fully repeatable. The proposed approach has the potential to facilitate and encourage future studies on the yet underexplored field of bacterial endosymbionts of ciliates and other protists. It can also find valuable applications for experimental questions other than those tested, such as fast and precise assessment of symbiont abundance in natural populations and comparison among multiple coexisting symbionts. PMID:26894821

  1. An annotated and revised checklist of pleurostome ciliates (Protista: Ciliophora: Litostomatea) from Slovakia, Central Europe.

    Science.gov (United States)

    Vďačný, Peter; Rajter, L'ubomír

    2014-01-01

    Pleurostomatids are predatory ciliates, living especially in the periphyton and benthos of various freshwater and marine habitats. In the present work, we provide an annotated and revised checklist of this ciliate group from the territory of Slovakia. Altogether 29 pleurostome species belonging to five genera have been reported there: Acineria incurvata, Ac. punctata, Ac. uncinata, Amphileptus claparedii, Am. falcatus, Am. fusiformis, Am. parafusidens, Am. pleurosigma, Am. procerus, Am. punctatus, A. rotundus, Litonotus alpestris, Li. anguilla, Li. carinatus, Li. crystallinus, Li. cygnus, Li. fasciola, Li. fusidens, Li. hirundo, Li. lamella, Li. minisculus, Li. muscorum, Li. obtusus, Li. triqueter, Li. varsaviensis, Loxophyllum helus, Lo. meleagris, Lo. rostratum, and Siroloxophyllum utriculariae. We have catalogued these records providing the following data for each species: (1) author(s) and date of publication; (2) name(s) of the species as appeared in the publication(s) followed by chronologically listed references including relevant page(s) in literature; (3) nomenclatural and taxonomic notes if needed; (4) main morphological characters; (5) morphological data on Slovak populations if available; and (6) all faunistic records. PMID:24870102

  2. Structures, Biological Activities and Phylogenetic Relationships of Terpenoids from Marine Ciliates of the Genus Euplotes

    Directory of Open Access Journals (Sweden)

    Fernando Dini

    2010-07-01

    Full Text Available In the last two decades, large scale axenic cell cultures of the marine species comprising the family Euplotidae have resulted in the isolation of several new classes of terpenoids with unprecedented carbon skeletons including the (i euplotins, highly strained acetylated sesquiterpene hemiacetals; (ii raikovenals, built on the bicyclo[3.2.0]heptane ring system; (iii rarisetenolides and focardins containing an octahydroazulene moiety; and (iv vannusals, with a unique C30 backbone. Their complex structures have been elucidated through a combination of nuclear magnetic resonance spectroscopy, mass spectrometry, molecular mechanics and quantum chemical calculations. Despite the limited number of biosynthetic experiments having been performed, the large diversity of ciliate terpenoids has facilitated the proposal of biosynthetic pathways whereby they are produced from classical linear precursors. Herein, the similarities and differences emerging from the comparison of the classical chemotaxonomy approach based on secondary metabolites, with species phylogenesis based on genetic descriptors (SSU-rDNA, will be discussed. Results on the interesting ecological and biological properties of ciliate terpenoids are also reported.

  3. ATP4 and ciliation in the neuroectoderm and endoderm of Xenopus embryos and tadpoles

    Directory of Open Access Journals (Sweden)

    Peter Walentek

    2015-09-01

    Full Text Available During gastrulation and neurulation, foxj1 expression requires ATP4a-dependent Wnt/β-catenin signaling for ciliation of the gastrocoel roof plate (Walentek et al. Cell Rep. 1 (2012 516–527. and the mucociliary epidermis (Walentek et al. Dev. Biol. (2015 of Xenopus laevis embryos. These data suggested that ATP4a and Wnt/β-catenin signaling regulate foxj1 throughout Xenopus development. Here we analyzed whether foxj1 expression was also ATP4a-dependent in other ciliated tissues of the developing Xenopus embryo and tadpole. We found that in the floor plate of the neural tube ATP4a-dependent canonical Wnt signaling was required for foxj1 expression, downstream of or in parallel to Hedgehog signaling. In the developing tadpole brain, ATP4-function was a prerequisite for the establishment of cerebrospinal fluid flow. Furthermore, we describe foxj1 expression and the presence of multiciliated cells in the developing tadpole gastrointestinal tract. Our work argues for a general requirement of ATP4-dependent Wnt/β-catenin signaling for foxj1 expression and motile ciliogenesis throughout Xenopus development.

  4. Seasonal and spatial dynamics of a ciliate assemblage in a warm-monomictic Lake Alchichica (Puebla, Mexico)

    Czech Academy of Sciences Publication Activity Database

    Macek, Miroslav; Peštová, D.; Pérez, M. E. M.

    2008-01-01

    Roč. 18, č. 1 (2008), s. 25-35. ISSN 0188-8897. [International Meeting Mex. Soc. Planktology /7./. Morelia, Michoacán, 30.05.2006-02.06.2006] Institutional research plan: CEZ:AV0Z60170517 Keywords : ciliates * athalassohaline lake * anoxic Subject RIV: EH - Ecology, Behaviour Impact factor: 0.132, year: 2008

  5. Factors involved in the distribution pattern of ciliates in the water column of a transparent alpine lake

    OpenAIRE

    SONNTAG, BETTINA; Summerer, Monika; Sommaruga, Ruben

    2011-01-01

    Abstract The recurrent depth preference of three ciliate species (two prostomatids and one haptorid) in a transparent alpine lake indicates the existence of niche partitioning among them involving potential factors such as avoidance of high UVR levels and zooplankton predation, as well as competition for food resources. (Sonntag, Bettina) (Summerer, Monika) (Sommaruga, Ruben) University...

  6. Several RNase T2 enzymes function in induced tRNA and rRNA turnover in the ciliate Tetrahymena

    DEFF Research Database (Denmark)

    Andersen, Kasper Langebjerg; Collins, Kathleen

    2012-01-01

    RNase T2 enzymes are produced by a wide range of organisms and have been implicated to function in diverse cellular processes, including stress-induced anticodon loop cleavage of mature tRNAs to generate tRNA halves. Here we describe a family of eight RNase T2 genes (RNT2A-RNT2H) in the ciliate...

  7. Composition and distribution of planktonic ciliates in the southern South China Sea during late summer: Comparison between surface and 75 m deep layer

    Science.gov (United States)

    Liu, Huaxue; Shen, Pingping; Li, Chunhou; Chen, Zuozhi; Qi, Zhanhui; Huang, Honghui

    2016-02-01

    Ciliates are very important components in most marine ecosystem. They are trophic link between the microbial food web and grazing food chain. In this study, ciliates were collected from 11 sites in the southern South China Sea (SCS) during August 25 to September 28, 2011. Their composition and distribution at the surface and 75 m deep depth of the ocean were studied. A total of 30 species belonging to 22 genera were identified, and 22 species of 15 genera were Tintinnids. Eutintinnus fraknoii and E. stramentus were the most common species. The other dominants were strombidiids ciliates including Strombidium conicum and S. globosaneum, which were followed by the tide form, Mesodinium pulex. Ciliates abundance ranged from 46 ind L-1 to 368 ind L-1 in the open sites, 46-368 ind L-1 at surface and 73-198 ind L-1 at 75 m deep layer. In the Yongshu reef, ciliates abundance ranged from 167 ind L-1 to 365 ind L-1 in the water column, similar to that in Sanya coral reef waters. Ciliates composition showed obvious difference between surface and 75 m deep layer at station S2 ( P deep layer, salinity was negatively related to mixed layer depth ( P < 0.05), but positively to chlorophyll a concentration ( P < 0.05), indicating that the change of vertical mixing in water column influenced vertical distribution of ciliates in the southern SCS.

  8. Spatiotemporal variation in community structure of marine benthic ciliates in the Yellow Sea during and after macroalgal and giant jellyfish blooms

    Science.gov (United States)

    Zhou, Bailing; Xu, Kuidong

    2016-07-01

    The annual bloom of the green macroalgal Ulva prolifera from May through July since 2008 and another of giant jellyfish Nemopilema nomurai from June through September have been frequent events in the Yellow Sea. However, the patterns of benthic ciliate communities during and after the blooms are still not known. In combination with analyses of benthic environmental factors, we investigated the distribution and community composition of benthic ciliates in the Yellow Sea in July and November 2011. In July, ciliates had high standing crops and diversity in the northern Yellow Sea, and in the inshore area off the southern Shandong Peninsula, where large numbers of green macroalgae accumulated. In November, the abundance, biomass and diversity of ciliates were high in the sea areas off the Shandong Peninsula and Changjiang estuary, where a large quantity of jellyfish occurred in August. Neither the abundance nor the biomass had significant difference between seasons, or between different compartments of the Yellow Sea. The species number, and both Margalef and Shannon-Wiener indices of ciliates were all significantly higher in November than in July. In both seasons, prostomateans and karyorelicteans consistently constituted the first and second most important ciliate groups in biomass; and carnivorous ciliates constituted the primary feeding type in terms of biomass as well as species richness, followed by bacterivores, algivores and omnivores. Compared with that in June 2007 when no macroalgae occurred, the percentage of small-sized bacterivores (e.g. Metacystis spp., Euplotes spp. and scuticociliates) increased in July 2011. The proportion of carnivorous ciliates increased in November, and this increased dominance of carnivorous ciliates may be a response to the increase in predominance of heterotrophic nanoflagellates, which might in turn be ascribed to an effect of green macroalgal and giant jellyfish blooms in the Yellow Sea.

  9. Tolerance of ciliated protozoan Paramecium bursaria (Protozoa, Ciliophora) to ammonia and nitrites

    Science.gov (United States)

    Xu, Henglong; Song, Weibo; Lu, Lu; Alan, Warren

    2005-09-01

    The tolerance to ammonia and nitrites in freshwater ciliate Paramecium bursaria was measured in a conventional open system. The ciliate was exposed to different concentrations of ammonia and nitrites for 2h and 12h in order to determine the lethal concentrations. Linear regression analysis revealed that the 2h-LC50 value for ammonia was 95.94 mg/L and for nitrite 27.35 mg/L using probit scale method (with 95% confidence intervals). There was a linear correlation between the mortality probit scale and logarithmic concentration of ammonia which fit by a regression equation y=7.32 x 9.51 ( R 2=0.98; y, mortality probit scale; x, logarithmic concentration of ammonia), by which 2 h-LC50 value for ammonia was found to be 95.50 mg/L. A linear correlation between mortality probit scales and logarithmic concentration of nitrite is also followed the regression equation y=2.86 x+0.89 ( R 2=0.95; y, mortality probit scale; x, logarithmic concentration of nitrite). The regression analysis of toxicity curves showed that the linear correlation between exposed time of ammonia-N LC50 value and ammonia-N LC50 value followed the regression equation y=2 862.85 e -0.08 x ( R 2=0.95; y, duration of exposure to LC50 value; x, LC50 value), and that between exposed time of nitrite-N LC50 value and nitrite-N LC50 value followed the regression equation y=127.15 e -0.13 x ( R 2=0.91; y, exposed time of LC50 value; x, LC50 value). The results demonstrate that the tolerance to ammonia in P. bursaria is considerably higher than that of the larvae or juveniles of some metozoa, e.g. cultured prawns and oysters. In addition, ciliates, as bacterial predators, are likely to play a positive role in maintaining and improving water quality in aquatic environments with high-level ammonium, such as sewage treatment systems.

  10. Tolerance of ciliated protozoan Paramecium bursaria (Protozoa,Ciliophora) to ammonia and nitrites

    Institute of Scientific and Technical Information of China (English)

    2005-01-01

    The tolerance to ammonia and nitrites in freshwater ciliate Paramecium bursaria was measured in a conventional open system. The ciliate was exposed to different concentrations of ammonia and nitrites for 2h and 12h in order to determine the lethal concentrations. Linear regression analysis revealed that the 2h-LC50 value for ammonia was 95.94 mg/L and for nitrite 27.35 mg/L using probit scale method (with 95% confidence intervals). There was a linear correlation between the mortality probit scale and logarithmic concentration of ammonia which fit by a regression equation y=7.32x-9.51 (R2=0.98; y, mortality probit scale; x, logarithmic concentration of ammonia), by which 2 h-LC50 value for ammonia was fotnd to be 95.50 mg/L. A linear correlation between mortality probit scales and logarithmic concentration of nitrite is also followed the regression equation y=2.86x+0.89 (R2=0.95; y, mortality probit scale; x, logarithmic concentration of nitrite). The regression analysis of toxicity curves showed that the linear correlation between exposed time of ammonia-N LC50 value and ammonia-N LC50 value followed the regression equation y=2862.85e-0.0ax (R2=0.95; y, duration of exposure to LC50 value; x, LC50 value), and that between exposed time of nitrite-N LC50 value and nitrite-N LC50 value followed the regression equation y = 127.15e-0.13x (R2=0.91; y, exposed time of LC50 value; x, LC50 value). The results demonstrate that the tolerance to ammonia in P. bursaria is considerably higher than that of the larvae or juveniles of some metozoa, e.g. cultured prawns and oysters. In addition, ciliates, as bacterial predators, are likely to play a positive role in maintaining and improving water quality in aquatic environments with high-level ammonium, such as sewage treatment systems.

  11. Ciliated Median Raphe Cyst of Perineum Presenting as Perianal Polyp: A Case Report with Immunohistochemical Study, Review of Literature, and Pathogenesis

    Directory of Open Access Journals (Sweden)

    Jayesh Sagar

    2006-01-01

    Full Text Available Median raphe cyst is a very rare, benign congenital lesion occurring mainly on the ventral aspect of the penis, but can develop anywhere in the midline between the external urethral meatus and anus. We report a case of median raphe cyst in the perineum presenting as a perianal polyp in a 65-year-old, English white male with exceptionally rare ciliated epithelium. According to our knowledge, this is the third such case of ciliated median raphe cyst in the English literature. This case, also the first case of ciliated median raphe cyst in the perineum location, focuses on pathogenesis of median raphe cyst.

  12. Thermodynamic Stability of Psychrophilic and Mesophilic Pheromones of the Protozoan Ciliate Euplotes

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    Kurt Wüthrich

    2013-01-01

    Full Text Available Three psychrophilic protein pheromones (En-1, En-2 and En-6 from the polar ciliate, Euplotes nobilii, and six mesophilic pheromones (Er-1, Er-2, Er-10, Er-11, Er-22 and Er-23 from the temperate-water sister species, Euplotes raikovi, were studied in aqueous solution for their thermal unfolding and refolding based on the temperature dependence of their circular dichroism (CD spectra. The three psychrophilic proteins showed thermal unfolding with mid points in the temperature range 55–70 °C. In contrast, no unfolding was observed for any of the six mesophilic proteins and their regular secondary structures were maintained up to 95 °C. Possible causes of these differences are discussed based on comparisons of the NMR structures of the nine proteins.

  13. New Record of Two Marine Ciliates (Ciliophora: Spirotrichea in South Korea

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    Kang-San Kim

    2013-04-01

    Full Text Available Two marine hypotrichous ciliates, Anteholosticha petzi and Ponturostyla enigmatica, were collected from the Yellow Sea and the Korea Strait, respectively, and described using live observation and protargol-impregnated specimens. Furthermore, the nuclear small subunit ribosomal RNA gene of each was sequenced and compared to previously annotated sequences retrieved from the GenBank. Anteholosticha petzi is characterized by 3 frontal cirri (FC, 2 frontoterminal cirri (FTC, 8-12 transverse cirri (TC, 1 buccal cirrus (BC, 9-12 midventral pairs (MP, 3 bipolar dorsal kineties (DK, and 3 types of colorless cortical granules. Ponturostyla enigmatica is characterized by 8 FC, 5 ventral cirri (VC, 5-7 TC, 6-7 marginal rows (MR on each side, 4 complete and 2-3 partial DK, and greenish cortical granules. This is the first identification and description of these 2 species, A. petzi and P. enigmatica, in South Korea.

  14. Epibiotic ciliates Scyphidia sp. and diatoms on Tigriopus fulvus (Copepoda: Harpacticoida exoskeleton

    Directory of Open Access Journals (Sweden)

    Luigi Pane

    2014-12-01

    Full Text Available Several microorganisms – epibionts – can adhere to living supports taking advantage for their survival, feeding and movement. Epibiosis occurs particularly in aquatic environments, on both benthic and planktonic organisms, among which copepods and cladocerans represent an important living support. The harpacticoid copepod Tigriopus fulvus, living in the splashpools of rocky coasts, was studied to recognize the occurrence of epibionts on the exoskeleton surface using scanning electon microscopy techniques. The first evidence of ciliate Scyphidia sp. on Tigriopus fulvus has been described and the occurrence of algae Cocconeis sp. has been observed as well. Epibionts were found to adhere to antennae, a site linked to the exploitation of water currents carrying food particles to mouthparts and to swimming legs. The reason of the occurrence on swimming legs is less clear and needs further observations. Pertinent results are described and discussed and the influence of epibionts on life cycle and behavior of Tigriopus fulvus is considered.

  15. Nuclear Architecture and Patterns of Molecular Evolution Are Correlated in the Ciliate Chilodonella uncinata.

    Science.gov (United States)

    Maurer-Alcalá, Xyrus X; Katz, Laura A

    2016-01-01

    The relationship between nuclear architecture and patterns of molecular evolution in lineages across the eukaryotic tree of life is not well understood, partly because molecular evolution is traditionally explored as changes in base pairs along a linear sequence without considering the context of nuclear position of chromosomes. The ciliate Chilodonella uncinata is an ideal system to address the relationship between nuclear architecture and patterns of molecular evolution as the somatic macronucleus of this ciliate is composed of a peripheral DNA-rich area (orthomere) and a DNA-poor central region (paramere) to form a "heteromeric" macronucleus. Moreover, because the somatic chromosomes of C. uncinata are highly processed into "gene-sized" chromosomes (i.e., nanochromosomes), we can assess fine-scale relationships between location and sequence evolution. By combining fluorescence microscopy and analyses of transcriptome data from C. uncinata, we find that highly expressed genes have the greatest codon usage bias and are enriched in DNA-poor regions. In contrast, genes with less biased sequences tend to be concentrated in DNA abundant areas, at least during vegetative growth. Our analyses are consistent with recent work in plants and animals where nuclear architecture plays a role in gene expression. At the same time, the unusual localization of nanochromosomes suggests that the highly structured nucleus in C. uncinata may create a "gene bank" that facilitates rapid changes in expression of genes required only in specific life history stages. By using "nonmodel" organisms like C. uncinata, we can explore the universality of eukaryotic features while also providing examples of novel properties (i.e., the presence of a gene bank) that build from these features. PMID:27189988

  16. Population dynamics of marine ciliate Euplotes vannus (Protozoa, Ciliophora) in different artificial seawaters

    Institute of Scientific and Technical Information of China (English)

    XU Henglong; ZHU Mingzhuang; JIANG Yong; GAO Shan; MIN Gi-Sik; AL-RASHEID Khaled A.S.

    2011-01-01

    To study population dynamics of marine ciliates in different artificial seawaters (ASW), the population growth dynamics of a common marine ciliate Euplotes vannus were investigated using beef extract media and rice media for five types of ASW and natural seawater (NSW). The results show that: (1) the population growth rate was in the order of NSW>Flack ASW>Nakamula ASW>Schmadz ASW>Oshima ASW>Subow ASW and was considerably higher in rice media than in beef extract media (apart from Subow ASW); (2) the maximum density of E. vannus in stationary phase in each treatment was ranked as Flack ASW>Nakamula ASW>Schmadz ASW>NSW>Oshima ASW>Subow ASW, and was again higher in rice media than in beef extract media (except for Subow ASW); (3) the exponential and stationary phases were longer in rice media than in beef extract media; (4) strains of E. vannus that had been domesticated for >1 year in ASW grew significantly slower, with lower maximum density and longer stationary phase than those isolated and maintained in NSW. It was demonstrated that: (1) E. vannus may grow well in Flack, Nakamula and Schmads ASW compared with NSW (mainly in terms of growth rate); and (2) Oshima ASW is the preferred choice for stock cultures of E. vannus, but the ASWs Flack, Nakamula and Schmadz are preferred for mass culture. These findings suggest that these three ASWs are effective for the cultivation of marine protozoa for experimental studies on ecology, toxicology and molecular biology.

  17. Tetrahymena pyriformis in the ciliate mobility test. Validation and description of a testing procedure for the registration of harmful substances in the air as well as the effects of cigarette smoke on the human respiratory ciliated epithelium.

    Science.gov (United States)

    Gräf, W; Gräf, H; Wenz, M

    1999-02-01

    The damage of the human respiratory ciliated epithelium or its ciliar activity caused by mixtures of harmful substances in the air and cigarette smoke is a considerable parameter for the judgment of acute harmful influences on the human respiratory tract. As an immediate measuring or a quantitative statement about the influence on cilia in vivo at human beings is extremely difficult and problematic, a convenient model experimental system in form of the so called ciliate mobility test (CMT) has been used. In this connection the influence on cilia of the protozan single-celled organism Tetrahymena pyriformis, regarding its average speed of locomotion has been taken as standard. The proof, that the cilia are identical in morphological and functional respect at the human ciliated epithelium and at T. pyriformis has been reached by electron optical comparative representation and bibliographical known substances, influencing cilia (theophylline, bromhexine, ambroxol, terpin hydrate, mercaptoethanesulfonat-sodium, amrinon, salbutamol, tetracosactid-hexaacetate, histamine, and phenol). With regard to the comparability and applicability to the human respiratory ciliated epithelium we have been able to gain statements by means of the CMT. By constructing a special reaction vessel the influence of harmful gases at a thin layer of ciliate culture suspension (1 cm) for a standardised exposure time (1 hour) has been made possible and with that a model for the comparability with the conditions of the human respiratory ciliated epithelium has been created. A number of harmful gases, that are relevant in the air hygiene (CO, CO2, N2, N2O, NO2, O3, SO2) as well as cigarette smoke at active smokers (primary stream smoke) and the inhalation of the smoke of other people's cigarettes has been tested. It turned out, that especially NO2 (nitric oxide) shows a high ciliar toxicity, while the controversially discussed ozone (O3) has not resulted in detraction of cilia. CO, N2O and SO2 have

  18. Ciliated muconodular papillary tumor of the lung: a newly defined low-grade malignant tumor with CT findings reminiscent of adenocarcinoma.

    Science.gov (United States)

    Hata, Yoshinobu; Yuasa, Rena; Sato, Fumitomo; Otsuka, Hajime; Goto, Hidenori; Isobe, Kazutoshi; Mitsuda, Aki; Wakayama, Megumi; Shibuya, Kazutoshi; Takagi, Keigo; Watanabe, Yoshiyuki

    2013-02-01

    A ciliated muconodular papillary tumor has been reported to be a peripheral low-grade malignant tumor, consisting of ciliated columnar cells and goblet cells with basaloid cell proliferation. Although ciliated muconodular papillary tumors have not yet been classified according to the World Health Organization classification, they can pose diagnostic and therapeutic problems. Here we report a resected case of ciliated muconodular papillary tumor with computed tomography findings reminiscent of adenocarcinoma, showing a small irregular nodule adjacent to the intersegment pulmonary vein. There was no uptake of F-18 fluorodeoxyglucose positron emission tomography. The patient underwent surgical resection, and a lobectomy was performed because intraoperative needle biopsy suggested neoplastic proliferation. No EGFR mutations were detected. No recurrence was noted during 24-month follow-up after lobectomy. PMID:23275641

  19. Notes on Soil Ciliates (Protozoa, Ciliophora) from The Netherlands, with Description of Keronopsis schminkei nov. spec. and Apobryophyllum schmidingeri nov. spec.

    OpenAIRE

    Foissner, Wilhelm; AL-RASHEID, Khaled

    2007-01-01

    Fifty-six ciliate taxa, including three new species, were found in two soil samples from the Hoge Veluwe National Park in The Netherlands. A literature search showed that The Netherlands, Belgium and Denmark are terra incognita with respect to soil ciliates: only about 100 species have been recorded. Likely, a much greater number, including many undescribed species, can be found on more detailed investigations. Two of the three new species are described in detail. Keronopsis schminkei nov. sp...

  20. Bioassessment of water quality status using a potential bioindicator based on functional groups of planktonic ciliates in marine ecosystems.

    Science.gov (United States)

    Xu, Henglong; Yong, Jiang; Xu, Guangjian

    2016-09-15

    The feasibility of a potential ecological indicator based on functional groups of planktonic ciliates for bioassessment of water quality status were studied in a bay, northern Yellow Sea. Samples were biweekly collected at five stations with different water quality status during a 1-year period. The multivariate approach based on "bootstrap-average" analysis was used to summarize the spatial variation in functional structure of the samples. The functional patterns represented a significant spatial variability, and were significantly correlated with the changes of nutrients (mainly nitrate nitrogen, NO3-N), alone or in combination with dissolve oxygen and salinity among five stations. The functional diversity represented a clear spatial variation among five stations, and was found to be significantly related to the nutrient NO3-N. According to the results, we suggest that the ecological parameter based on functional groups of planktonic ciliates may be used as a potential bioindicator of water quality status in marine ecosystems. PMID:27318762

  1. Blooms of a benthic ciliate, Maristentor dinoferus (Heterotrichea: Maristentoridae, on coral reefs of Guam, Mariana Islands. (Note

    Directory of Open Access Journals (Sweden)

    Schefter, M.

    2012-05-01

    Full Text Available Maristentor dinoferus is visible in situ with the naked eye; it forms aggregations at several scales: individuals form dynamic clusters within colonies that are normally widely scattered, but in recurrent blooms during the dry seasons of 2005 through 2007, colonies often formed close together in patches (metapopulations. Patches were extremely abundant in Guam, both in Apra Harbor and on the outer coast. This is the first time that long-term changes in a benthic ciliate population have been documented in situ and that multi-scale patchiness has been reported for a benthic ciliate. Colonies were mapped and monitored; some patches over 1 m diameter were recorded. Since 2008, the distribution has again consisted of scattered colonies, as it did from 1999–2004.

  2. The Condensin Complex Is Essential for Amitotic Segregation of Bulk Chromosomes, but Not Nucleoli, in the Ciliate Tetrahymena thermophila†

    Science.gov (United States)

    Cervantes, Marcella D.; Coyne, Robert S.; Xi, Xiaohui; Yao, Meng-Chao

    2006-01-01

    The macronucleus of the binucleate ciliate Tetrahymena thermophila contains fragmented and amplified chromosomes that do not have centromeres, eliminating the possibility of mitotic nuclear division. Instead, the macronucleus divides by amitosis with random segregation of these chromosomes without detectable chromatin condensation. This amitotic division provides a special opportunity for studying the roles of mitotic proteins in segregating acentric chromatin. The Smc4 protein is a core component of the condensin complex that plays a role in chromatin condensation and has also been associated with nucleolar segregation, DNA repair, and maintenance of the chromatin scaffold. Mutants of Tetrahymena SMC4 have remarkable characteristics during amitosis. They do not form microtubules inside the macronucleus as normal cells do, and there is little or no bulk DNA segregation during cell division. Nevertheless, segregation of nucleoli to daughter cells still occurs, indicating the independence of this process and bulk DNA segregation in ciliate amitosis. PMID:16738332

  3. Can the halophilic ciliate Fabrea salina be used as a bio-control of microalgae blooms in solar salterns?

    Science.gov (United States)

    Hong, Hyun Pyo; Choi, Joong Ki

    2015-09-01

    The microlage Dunaliella salina, a major producer in salterns, is a serious problem for salt production. In this study we tried to assess if Fabrea salina can control D. salina. By parameterising numerical and functional response (growth and grazing vs prey abundance, respectively) at 90 psu and 30°C, where the ciliate is abundant and grows well, we developed a predator-prey model. The model is used to explore how change in microalga growth rate affect the dynamics, and the functional response is used in combination with field data to assess the potential impact of F. salina on D. salina. Over the 20 d simulation the ciliate controlled the prey population under all prey growth rates; although once D. salina were exhausted below the threshold level, F. salina died due to starvation, allowing the alga to increase in abundance, resulting in one or two predatorprey cycle, depending on prey growth rate. In general, the model predicted trends observed by others in the field, suggesting that it provided a good prediction of what may occur under the conditions we examined. Likewise we show that the ciliate can have a high impact on microalgal populations in the field. Finally, a literature review indicated that F. salina could be a good competitor with other protozoa and metazoan in salterns, depending on salinity and temperature, which requires further study and attention. In summary, we encourage continued studies on this unique ciliate on solar salterns and suggest that it may be useful in the bio-control of micoalgae.

  4. Associative behaviour and antagonism of bovine rumen ciliate (Protista, Ciliophora from Zona da Mata, Minas Gerais State, Brazil

    Directory of Open Access Journals (Sweden)

    Marta D'Agosto

    2001-12-01

    Full Text Available Aiming at obtaining the community profile and verifying the occurrence of antagonism and association among ciliates, samples of rumen content were analysed in 100 bovines soon after their death. The animals were killed at the Juiz de Fora Municipal slaughter house (Juiz de Fora, Minas Gerais State, Brazil between August 1996 and May 1997. Ciliates occurred, respectively, in the following percents and samples number: Entodinium Stein, 1859 (50,48; 100, Diplodinium Schuberg, 1888 (5,59; 98, Eudiplodinium Dogiel, 1927 (6,91; 97, Ostracodinium Dogiel, 1927 (9,68; 95, hotricha Stein, 1859 (4,15; 93, Dasytricha Schuberg, 1888 (3,31; 93, Metadi nium Awerinzew & Mutafowa, 1914 (3,06; 90, Eremoplastron Kofoid & MacLennan. 1932 (7,39; 87, Epidinium Crawley, 1923 (5,31; 73, Charonina Strand, 1928 (1,33; 65, Eodinium Kofoid & MacLennan, 1932 (1,49; 59, Diploplastron Kofoid & MacLennan, 1932 (0,88; 24, Elytroplastron Kofoid & MacLennan, 1932 (0,36; 16, Polyplastron Dogiel, 1927 (0,04; 03 and Buetschlia Schuberg, 1888 (0,02; 01. When the antagonistic behaviour and the association were analyzed, it was observed that Eudiplodinium was detected in the absence of Polyplastron and in the presence of Epidinium in 94% and 73% of the samples, respectively. These data confirm the antagonism and the coexistence among particular populations of rumen ciliates and allowed the identification of 94% of the samples examined as being of profile type B, none of type A and 3% of mixed A-B community and of type O. It is suggested the use of the term community profile instead of population profile, as the respective types involve associations of various ciliate populations.

  5. The behaviour of both Listeria monocytogenes and rat ciliated ependymal cells is altered during their co-culture

    OpenAIRE

    Fadaee-Shohada, Mina J.; Hirst, Robert A; Andrew Rutman; Roberts, Ian S.; Chris O'Callaghan; Andrew, Peter W.

    2010-01-01

    BACKGROUND: Ciliated ependymal cells line the cerebral ventricles and aqueducts separating the infected CSF from the brain parenchyma in meningitis. PRINCIPAL FINDINGS: Investigation of the interaction of Listeria monocytogenes with cultured rat brain ependymal cells showed that certain strains reduced the beat frequency of the cilia but all the strains studied significantly reduced the ciliary beat amplitude (the linear distance travelled by the tip of each cilium per beat cycle). CONCLUSION...

  6. The extracellular matrix protein artichoke is required for integrity of ciliated mechanosensory and chemosensory organs in Drosophila embryos.

    Science.gov (United States)

    Andrés, Marta; Turiégano, Enrique; Göpfert, Martin C; Canal, Inmaculada; Torroja, Laura

    2014-04-01

    Sensory cilia are often encapsulated by an extracellular matrix (ECM). In Caenorhabditis elegans, Drosophila melanogaster, and vertebrates, this ECM is thought to be directly involved in ciliary mechanosensing by coupling external forces to the ciliary membrane. Drosophila mechano- and chemosensory cilia are both associated with an ECM, indicating that the ECM may have additional roles that go beyond mechanosensory cilium function. Here, we identify Artichoke (ATK), an evolutionarily conserved leucine-rich repeat ECM protein that is required for normal morphogenesis and function of ciliated sensilla in Drosophila. atk is transiently expressed in accessory cells in all ciliated sensory organs during their late embryonic development. Antibody stainings show ATK protein in the ECM that surrounds sensory cilia. Loss of ATK protein in atk null mutants leads to cilium deformation and disorientation in chordotonal organs, apparently without uncoupling the cilia from the ECM, and consequently to locomotion defects. Moreover, impaired chemotaxis in atk mutant larvae suggests that, based on ATK protein localization, the ECM is also crucial for the correct assembly of chemosensory receptors. In addition to defining a novel ECM component, our findings show the importance of ECM integrity for the proper morphogenesis of ciliated organs in different sensory modalities. PMID:24496014

  7. Insights into bioassessment of marine pollution using body-size distinctness of planktonic ciliates based on a modified trait hierarchy.

    Science.gov (United States)

    Xu, Henglong; Jiang, Yong; Xu, Guangjian

    2016-06-15

    Based on a modified trait hierarchy of body-size units, the feasibility for bioassessment of water pollution using body-size distinctness of planktonic ciliates was studied in a semi-enclosed bay, northern China. An annual dataset was collected at five sampling stations within a gradient of heavy metal contaminants. Results showed that: (1) in terms of probability density, the body-size spectra of the ciliates represented significant differences among the five stations; (2) bootstrap average analysis demonstrated a spatial variation in body-size rank patterns in response to pollution stress due to heavy metals; and (3) the average body-size distinctness (Δz(+)) and variation in body-size distinctness (Λz(+)), based on the modified trait hierarchy, revealed a clear departure pattern from the expected body-size spectra in areas with pollutants. These results suggest that the body-size diversity measures based on the modified trait hierarchy of the ciliates may be used as a potential indicator of marine pollution. PMID:27105728

  8. Ecological functions of ciliated protozoa in marine ecosystem: effects of ammonium on the population growth of Euplotes vannus

    Institute of Scientific and Technical Information of China (English)

    Xu Henglong; Song Weibo; Zhu Mingzhuang; Wang Mei; Ma Honggang; Xu Xiaozhong

    2005-01-01

    The effects of ammonium on the population growth of the marine ciliate, Euplotes vannus, were examined using ecotoxicological method. It is showed that ammonium exerts inhibitory effects on the growth of the ciliate populations in a concentration-dependent way. Statistical analysis reveals that the population growth dynamics exposed to ammonium-N concentration over 100mg/L are significantly different from that in the control at P<0.05 level. Linear regression determined that the 24h, 36h, 48h, 60h, 72h and 84h IC50 values of ammonium-N are 19.68, 201.51, 167.49, 47.86, 50.43 and 43.11 concentration over 100mg/L, respectively (P<0.05; pH 8.2; salinity 28 ppt; temperature, 25℃). The results indicate that the tolerance to ammonium in E. vannus is considerably higher than that of the larvae or juveniles of some metozoa, such as cultured prawns and oysters. Therefore, it is believed that the high tolerance to ammonium is necessary for ciliated protozoa to play positive roles in maintaining and improving water quality in marine ecosystems, especially in the intensive aquaculture waters with high-level ammonium. In addition, the correlation between IC50 values and exposure time was discussed.

  9. Connecting alveolate cell biology with trophic ecology in the marine plankton using the ciliate Favella as a model.

    Science.gov (United States)

    Echevarria, Michael L; Wolfe, Gordon V; Strom, Suzanne L; Taylor, Alison R

    2014-10-01

    Planktonic alveolates (ciliates and dinoflagellates), key trophic links in marine planktonic communities, exhibit complex behaviors that are underappreciated by microbiologists and ecologists. Furthermore, the physiological mechanisms underlying these behaviors are still poorly understood except in a few freshwater model ciliates, which are significantly different in cell structure and behavior than marine planktonic species. Here, we argue for an interdisciplinary research approach to connect physiological mechanisms with population-level outcomes of behaviors. Presenting the tintinnid ciliate Favella as a model alveolate, we review its population ecology, behavior, and cellular/molecular biology in the context of sensory biology and synthesize past research and current findings to construct a conceptual model describing the sensory biology of Favella. We discuss how emerging genomic information and new technical methods for integrating research across different levels of biological organization are paving the way for rapid advance. These research approaches will yield a deeper understanding of the role that planktonic alveolates may play in biogeochemical cycles, and how they may respond to future ocean conditions. PMID:25039294

  10. Genome structure drives patterns of gene family evolution in ciliates, a case study using Chilodonella uncinata (Protista, Ciliophora, Phyllopharyngea).

    Science.gov (United States)

    Gao, Feng; Song, Weibo; Katz, Laura A

    2014-08-01

    In most lineages, diversity among gene family members results from gene duplication followed by sequence divergence. Because of the genome rearrangements during the development of somatic nuclei, gene family evolution in ciliates involves more complex processes. Previous work on the ciliate Chilodonella uncinata revealed that macronuclear β-tubulin gene family members are generated by alternative processing, in which germline regions are alternatively used in multiple macronuclear chromosomes. To further study genome evolution in this ciliate, we analyzed its transcriptome and found that (1) alternative processing is extensive among gene families; and (2) such gene families are likely to be C. uncinata specific. We characterized additional macronuclear and micronuclear copies of one candidate alternatively processed gene family-a protein kinase domain containing protein (PKc)-from two C. uncinata strains. Analysis of the PKc sequences reveals that (1) multiple PKc gene family members in the macronucleus share some identical regions flanked by divergent regions; and (2) the shared identical regions are processed from a single micronuclear chromosome. We discuss analogous processes in lineages across the eukaryotic tree of life to provide further insights on the impact of genome structure on gene family evolution in eukaryotes. PMID:24749903

  11. Acute Toxicities of Potassium Permanganate, Formalin, and Lugol's Iodine Solution to a Marine Ciliate,Pleuronema coronatum ( Ciliophora, Scuticociliatida)

    Institute of Scientific and Technical Information of China (English)

    QIU Yantao; SONG Weibo

    2002-01-01

    Acute toxicities of potassium permanganate, formalin, and Lugol's iodine solution to a commonly occurred ma-rine ciliate Pleuronema coronatum (Ciliophora, Scuticociliatida) were measured. Linear regression analysis of the resultshighlighted the close relationships between doses of the medicines and mortalities of the organisms, thus providing a capabili-ty to predict toxicity effects from the dose. Toxic effects of the medicines on the ciliates were described in the present paper,and the median lethal concentrations (LC50 values) were given. Results of measurements indicated that 2 h-LC50 and 12 h-LC50 values of formalin on P. coronatum were 59.00 × 10-6 and 43.57 × 10 6, while those of Lugol's solutions were 90.13 and67.84 × 10 6 respectively. The tolerance of P. coronatum to formalin is apparently lower than that to Lugol' s iodine solutionand potassium permanganate is a suitable medicine to kill ciliates in short time.

  12. Macronuclear genome sequence of the ciliate Tetrahymena thermophila, a model eukaryote.

    Directory of Open Access Journals (Sweden)

    Jonathan A Eisen

    2006-09-01

    Full Text Available The ciliate Tetrahymena thermophila is a model organism for molecular and cellular biology. Like other ciliates, this species has separate germline and soma functions that are embodied by distinct nuclei within a single cell. The germline-like micronucleus (MIC has its genome held in reserve for sexual reproduction. The soma-like macronucleus (MAC, which possesses a genome processed from that of the MIC, is the center of gene expression and does not directly contribute DNA to sexual progeny. We report here the shotgun sequencing, assembly, and analysis of the MAC genome of T. thermophila, which is approximately 104 Mb in length and composed of approximately 225 chromosomes. Overall, the gene set is robust, with more than 27,000 predicted protein-coding genes, 15,000 of which have strong matches to genes in other organisms. The functional diversity encoded by these genes is substantial and reflects the complexity of processes required for a free-living, predatory, single-celled organism. This is highlighted by the abundance of lineage-specific duplications of genes with predicted roles in sensing and responding to environmental conditions (e.g., kinases, using diverse resources (e.g., proteases and transporters, and generating structural complexity (e.g., kinesins and dyneins. In contrast to the other lineages of alveolates (apicomplexans and dinoflagellates, no compelling evidence could be found for plastid-derived genes in the genome. UGA, the only T. thermophila stop codon, is used in some genes to encode selenocysteine, thus making this organism the first known with the potential to translate all 64 codons in nuclear genes into amino acids. We present genomic evidence supporting the hypothesis that the excision of DNA from the MIC to generate the MAC specifically targets foreign DNA as a form of genome self-defense. The combination of the genome sequence, the functional diversity encoded therein, and the presence of some pathways missing from

  13. Molecular Characterization of a Copper Metallothionein Gene From a Ciliate Tetrahymena farahensis.

    Science.gov (United States)

    Zahid, Muhammad Tariq; Shakoori, Farah Rauf; Zulifqar, Soumble; Ahmed, Ishtiaq; Al-Ghanim, Khalid; Mehboob, Shahid; Shakoori, Abdul Rauf

    2016-08-01

    A new copper metallothionein (TfCuMT) gene has been identified from a locally isolated ciliate Tetrahymena farahensis. It contains 327 nucleotides encoding a peptide chain of 108 amino acids and belongs to class MTT2 and subfamily 7b. Amplification from both gDNA and mRNA confirmed the intronless nature of this gene. Like most of the metallohtioneins, cysteine residues contribute nearly 30% content with the specific CKC motifs. Structural repeats present in peptide sequence of TfCuMT indicate internal duplication of gene at some stage of gene evolution. The predicted model of copper metallothionein protein showed that copper ions are mainly chelated by thiol sulfur of cysteine residues and are embedded in the folds of polypeptide chain. For in vivo expression of TfCuMT in Escherichia coli host cells the classical stop codons, which coded for glutamine in the ciliate were mutated to CAA and CAG through site directed mutagenesis. The mutated gene showed higher expression in pET28a expression vector compared with pET21a. Optimum expression was obtained after 6-8 h of 0.1 mM IPTG induction. Stability of His tagged TfCuMT in 5% SDS was low, with half-life of about 104 min. Presence of 1.0 μM copper increased the expression level by 1.65-fold. Presence of 100 μM Cysteine in culture medium caused 2.4-fold increase in expression level. His tagged TfCuMT was purified through affinity chromatography using NTN-His binding resin in the presence of 0.1 M imidazole and NaCl. The modeled structure of the TfCuMT showed a cleft for Cu binding with correct orientation of Cys residues in the motif CKC. J. Cell. Biochem. 117: 1843-1854, 2016. © 2016 Wiley Periodicals, Inc. PMID:26754785

  14. The trophic role and impact of plankton ciliates in the microbial web structure of a tropical polymictic lake dominated by filamentous cyanobacteria

    Directory of Open Access Journals (Sweden)

    Alfonso Esquivel

    2016-03-01

    Full Text Available The recent interest in the plankton structures and dynamics in tropical and subtropical lakes has revealed important trends that set these lakes apart from temperate lakes, and one of the main differences is the enhanced importance of the microbial food web with respect to net plankton. Ciliates are a key component of subtropical and tropical microbial webs because of their role as dominant picoplankton grazers and their ability to channel picoplankton production to the uppermost trophic levels. Plankton ciliates have been found to play a crucial role in the survival of fish larvae in lakes that share several features with Lake Catemaco, a eutrophic tropical Mexican lake. Therefore, the plankton ciliate composition, abundance, and biomass of Lake Catemaco were studied to assess their role in the microbial food web. The data were obtained from surface and bottom water samples collected at eleven points during three surveys in 2011 and an additional survey in 2013, with the surveys covering the local climatic seasons. The most abundant components of the plankton ciliate assemblages were small prostomatids (Urotricha spp., choreotrichs (Rimostrombidium spp., cyclotrichs (Mesodinium and Askenasia, and scuticociliates (Cyclidium, Cinetochilum, Pleuronema, and Uronema. Other important ciliates in terms of abundance and/or biomass were haptorids (Actinobolina, Belonophrya, Monodinium, Paradileptus, and Laginophrya, Halteria, oligotrichs (Limnostrombidium and Pelagostrombidium, Linostomella, Bursaridium, Cyrtolophosis, and Litonotus. The ciliate abundance averaged 57 cells mL-1 and ranged from 14 to 113 cells mL-1. The mean ciliate biomass was 71 µg C L-1 and ranged from 10 to 202 µg C L-1. Differences were not detected in ciliate abundance or biomass between the sampling points or sampling depths (surface to bottom; however, significant differences were observed between seasons for both variables. Nano-sized filamentous cyanobacteria were the most

  15. Trichodina modesta: an exotic ciliate in the Neotropical region parasitizing an unusual host.

    Science.gov (United States)

    Valladão, Gustavo Moraes Ramos; Giannecchini, Luiz Gustavo; Martins, Maurício Laterça; de Pádua, Santiago Benites

    2015-01-01

    In this study, an important ornamental fish, Betta splendens (Osphronemidae), from three different Brazilian states was examined for parasitic infestations. Smears with parasites were impregnated with silver nitrate or stained using Giemsa for taxonomic evaluation. A disc-shaped trichodinid with a body diameter of 39.7 ± 3.3 µm, adhesive disc diameter of 32.9 ± 3.1 µm and denticulate ring diameter of 19.5 ± 2.0 µm was found. The morphological characteristics resembled those of Trichodina modesta Lom, 1970, a species that shows clear host specificity for Cypriniformes. Until now, its occurrence was restricted to the Eurasian region. In the present study, a new host for T. modesta is reported and therefore the first occurrence of this species in the Americas. The parasite was possibly introduced into the Neotropical region through the exotic fish trade, especially of Cypriniformes used by aquarists. The distribution of this ciliate is discussed and a checklist of localities and hosts for the species is provided. PMID:26154956

  16. Morphology, ontogeny, and phylogeny of two brackish urostylid ciliates (Protist, Ciliophora, Hypotricha).

    Science.gov (United States)

    Chen, Xumiao; Miao, Miao; Ma, Honggang; Al-Rasheid, Khaled A S; Xu, Kuidong; Lin, Xiaofeng

    2014-01-01

    The diversity of hypotrichous ciliates has encouraged numerous researchers to use a combination of morphological, morphogenetic, and phylogenetic data to provide a better understanding of the evolutionary relationships within this complex group. In this study, we investigate the morphology and morphogenesis of Pseudourostyla subtropica sp. nov., isolated from mangrove wetland. The new species can be distinguished from its congeners by the huge body size, many more adoral membranelles and marginal cirral rows, and numerous macronuclear nodules. In addition, we provide a morphological characterization of a population of Pseudourostyla nova Wiackowski 1988 from an estuarine habitat. The main events during binary fission of P. subtropica sp. nov. and the Chinese population of P. nova are also revealed to be conservative. The morphological, ontogenetic, and phylogenetic analyses based on the SSU rDNA sequences corroborate the monophyly of Pseudourostyla Borror, 1972, which corresponds well with previous research. The phylogenetic analyses also show that Pseudourostyla and Hemicycliostyla Stokes, 1886, both of which are assigned to the family Pseudourostylidae based on morphological and morphogenetic data, in fact fall into separated clades. The approximately unbiased tests, however, do not reject the possibility that the family Pseudourostylidae is a monophyletic lineage. PMID:25040093

  17. Space station image captures a red tide ciliate bloom at high spectral and spatial resolution.

    Science.gov (United States)

    Dierssen, Heidi; McManus, George B; Chlus, Adam; Qiu, Dajun; Gao, Bo-Cai; Lin, Senjie

    2015-12-01

    Mesodinium rubrum is a globally distributed nontoxic ciliate that is known to produce intense red-colored blooms using enslaved chloroplasts from its algal prey. Although frequent enough to have been observed by Darwin, blooms of M. rubrum are notoriously difficult to quantify because M. rubrum can aggregate into massive clouds of rusty-red water in a very short time due to its high growth rates and rapid swimming behavior and can disaggregate just as quickly by vertical or horizontal dispersion. A September 2012 hyperspectral image from the Hyperspectral Imager for the Coastal Ocean sensor aboard the International Space Station captured a dense red tide of M. rubrum (10(6) cells per liter) in surface waters of western Long Island Sound. Genetic data confirmed the identity of the chloroplast as a cryptophyte that was actively photosynthesizing. Microscopy indicated extremely high abundance of its yellow fluorescing signature pigment phycoerythrin. Spectral absorption and fluorescence features were related to ancillary photosynthetic pigments unique to this organism that cannot be observed with traditional satellites. Cell abundance was estimated at a resolution of 100 m using an algorithm based on the distinctive yellow fluorescence of phycoerythrin. Future development of hyperspectral satellites will allow for better enumeration of bloom-forming coastal plankton, the associated physical mechanisms, and contributions to marine productivity. PMID:26627232

  18. Electrochemical study of the interaction between Eu3+ and ciliate Euplotes octocarinatus centrin

    International Nuclear Information System (INIS)

    A new species was formed when protein P23 (one segment of ciliate Euplotes octocarinatus centrin) was added to a solution of Eu3+. The interaction between P23 and Eu3+ was investigated by cyclic voltammetry, pulse voltammetry and electrochemical impedance spectroscopy in 10 mM N-2-hydroxyethylpiperazine-N-2-ethanesulfonic acid (HEPES) buffer (pH 7.4) using a pyrolytic graphite electrode. The formal potential (Eo') of Eu3+ shifted from -0.61 to -0.84 V (versus saturated calomel electrode) after P23 was added to the Eu3+ solution. The diffusion coefficient (D), the charge-transfer coefficient (α) and the electron transfer standard rate constant (ks) were obtained in the absence and the presence of P23. The affinity constant of Eu3+ and P23 was determined to be (1.89 ± 0.51) x 104 M-1. The electrochemical investigation of europium bound to the protein provided useful data for the studies of calcium-binding proteins.

  19. Genealogical analyses of multiple loci of litostomatean ciliates (Protista, Ciliophora, Litostomatea).

    Science.gov (United States)

    Vd'ačný, Peter; Bourland, William A; Orsi, William; Epstein, Slava S; Foissner, Wilhelm

    2012-11-01

    The class Litostomatea is a highly diverse ciliate taxon comprising hundreds of free-living and endocommensal species. However, their traditional morphology-based classification conflicts with 18S rRNA gene phylogenies indicating (1) a deep bifurcation of the Litostomatea into Rhynchostomatia and Haptoria+Trichostomatia, and (2) body polarization and simplification of the oral apparatus as main evolutionary trends in the Litostomatea. To test whether 18S rRNA molecules provide a suitable proxy for litostomatean evolutionary history, we used eighteen new ITS1-5.8S rRNA-ITS2 region sequences from various free-living litostomatean orders. These single- and multiple-locus analyses are in agreement with previous 18S rRNA gene phylogenies, supporting that both 18S rRNA gene and ITS region sequences are effective tools for resolving phylogenetic relationships among the litostomateans. Despite insertions, deletions and mutational saturations in the ITS region, the present study shows that ITS1 and ITS2 molecules can be used to infer phylogenetic relationships not only at species level but also at higher taxonomic ranks when their secondary structure information is utilized to aid alignment. PMID:22789763

  20. Novel Discovery of Two Heterotrichid Ciliates, Climacostomum virens and Fabrea salina (Ciliophora: Heterotrichea: Heterotrichida in Korea

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    Kim, Ji Hye

    2015-07-01

    Full Text Available Two heterotrichid ciliates, Climacostomum virens (Ehrenberg, 1838 Stein, 1859 from brackish water and freshwater, and Fabrea salina Henneguy, 1890 from a solar saltern, were collected in Korea. They are novelly investigated in Korea by means of live observation, protargol staining and nuclear small subunit (SSU rRNA gene sequencing. Climacostomum virens is characterized by pouch-like body shape, body length of $200-370{\\mu}m$ 수식 이미지 in vivo, conspicuous cytopharyngeal tube, macronuclei ribbon-like shape, and one to four in number, with or without symbiont algae in cytoplasm, 34-66 somatic kineties, 67-113 adoral zone of membranelles, 8-42 peristomial kineties, 24-37 apical membranelles. SSU rDNA sequence size is 1,591 bp and GC contents 48.52%. Fabrea salina is also characterized by scoop-like body shape with proboscis, body length of $190-240{\\mu}m$ 수식 이미지 in vivo, one to two rod-shaped macronuclei, oval micronuclei, grayish green cortical granules, 104-186 somatic kineties, 4-8 preoral kineties, 7-19 peristomial kineties and fragmented paroral membrane. SSU rDNA sequence size is 1,598 bp and GC contents 47.50%.

  1. Purification and partial characterization of glyceraldehyde-3-phosphate dehydrogenase from the ciliate Tetrahymena thermophila

    Institute of Scientific and Technical Information of China (English)

    Nadia Errafiy; Abdelaziz Soukri

    2012-01-01

    In the present study,we purified the glycolytic enzymeglyceraldehyde-3-phosphate dehydrogenase (GAPDH)which is involved in cellular energy production and has important housekeeping functions,from the ciliate Tetrahymena thermophila using a three-step procedure.The enzyme was purified ~68 folds by ammonium sulfate precipitation,followed by two steps of column chromatography (DEAE-cellulose and Mono-S).The purified enzyme is a homotetramer with a molecular weight of ~120 kDa.Isoelectric focusing analysis showed the presence of only one basic GAPDH isoform with an isoelectric point of 8.8.Western blot analysis showed a single 32-kDa band corresponding to the enzyme subunit using a monospecific polyclonal antibody against the T.thermophila GAPDH.The maximum of enzyme activity occurred at pH 8.0 and at 30-35℃.The apparent Km values for both NAD+ and D-glyceraldehyde-3-phosphate were 0.102±0.012 and 0.360 + 0.018 mM,respectively.The maximal velocity (Vmax) was 39.40 + 2.95 U/mg.The T.thermophila GAPDH is inhibited by oxidative and nitrosative stress reagents.

  2. Propulsion of swimming microrobots inspired by metachronal waves in ciliates: from biology to material specifications

    International Nuclear Information System (INIS)

    The quest for swimming microrobots originates from possible applications in medicine, especially involving navigation in bodily fluids. Swimming microorganisms have become a source of inspiration because their propulsion mechanisms are effective in the low-Reynolds number regime. In this study, we address a propulsion mechanism inspired by metachronal waves, i.e. the spontaneous coordination of cilia leading to the fast swimming of ciliates. We analyse the biological mechanism (referring to its particular embodiment in Paramecium caudatum), and we investigate the contribution of its main features to the swimming performance, through a three-dimensional finite-elements model, in order to develop a simplified, yet effective artificial design. We propose a bioinspired propulsion mechanism for a swimming microrobot based on a continuous cylindrical electroactive surface exhibiting perpendicular wave deformations travelling longitudinally along its main axis. The simplified propulsion mechanism is conceived specifically for microrobots that embed a micro-actuation system capable of executing the bioinspired propulsion (self-propelled microrobots). Among the available electroactive polymers, we select polypyrrole as the possible actuation material and we assess it for this particular embodiment. The results are used to appoint target performance specifications for the development of improved or new electroactive materials to attain metachronal-waves-like propulsion. (paper)

  3. Inter-annual ciliate distribution variation within the late stratification oxycline in a monomictic lake, Lake Alchichica (Mexico

    Directory of Open Access Journals (Sweden)

    Ximena Sánchez Medina

    2016-03-01

    Full Text Available noxia, and ciliates might play a very important role in the plankton community budget there. We analysed changes in the composition and biomass of the ciliate assemblage and other microbial loop components throughout the oxycline just at the end of stratification in a warm-monomictic lake, Lake Alchichica, Mexico (four samplings: 2006-2008, 2010; the results were compared with those obtained from another lake from the region, La Preciosa, sampled in 2010. Bacteria, autotrophic picoplankton (APP and flagellates were analysed using epifluorescence microscopy. Ciliates were evaluated either in DAPI stained samples (looking for pigmented organelles and/or ingested phototrophs or in quantitative protargol stain (QPS permanent preparations, where they were identified at the genus or species level. The end of the stratification period in Lake Alchichica was characterized by almost uniform heterotrophic picoplankton (HPP numbers (106 cells mL-1 throughout the water column. Meanwhile, APP showed epilimnetic and/or metalimnetic maxima of 105 cells mL-1 followed by an order of magnitude drop in the hypolimnion. A very important peak (105 cells mL-1 of the autotrophic or mixotrophic flagellate Pyramimonas sp. was observed repeatedly above and within the oxycline of Lake Alchichica. Ciliate biomass maxima were found around the oxycline and in the above-bottom layer. The top of the oxycline was dominated by Euplotes spp. and Spirostomum teres fine- to coarse-filter feeders (feeding upon APP, nanodiatoms and algae. Raptorial haptorids (in particular, Phialina sp. were the second most important group, generally occupying the layer below euplotids, followed by Holophrya and Prorodon facultative anaerobic prostomes. Sometimes, strictly anaerobic Caenomorpha sp. was found to be important in the anoxic hypolimnion. Minute picoplankton feeding species (both APP and heterotrophic bacteria feeders were important throughout the water column: in the epilimnion

  4. Ciliate Nassula sp. grazing on a microcystin-producing cyanobacterium (Planktothrix agardhii): impact on cell growth and in the microcystin fractions

    Energy Technology Data Exchange (ETDEWEB)

    Combes, Audrey; Dellinger, Marc [' Molecules de communication et adaptation des microorganismes' , UMR 7245 CNRS-MNHN, Museum national d' Histoire naturelle, CP 39, 57 rue Cuvier, F-75231 Paris Cedex 05 (France); Cadel-six, Sabrina [' Unite Caracterisation des Toxines' - Laboratoire de securite des aliments de Maisons-Alfort - ANSES, F-94701 Maisons Alfort Cedex (France); Amand, Severine [' Molecules de communication et adaptation des microorganismes' , UMR 7245 CNRS-MNHN, Museum national d' Histoire naturelle, CP 39, 57 rue Cuvier, F-75231 Paris Cedex 05 (France); Comte, Katia, E-mail: kcomte@mnhn.fr [' Molecules de communication et adaptation des microorganismes' , UMR 7245 CNRS-MNHN, Museum national d' Histoire naturelle, CP 39, 57 rue Cuvier, F-75231 Paris Cedex 05 (France)

    2013-01-15

    The proliferation of microcystins (MCs)-producing cyanobacteria (MCs) can have detrimental effects on the food chain in aquatic environments. Until recently, few studies had focused on the fate of MCs in exposed organisms, such as primary consumers of cyanobacteria. In this study, we investigate the impact of an MC-producing strain of the cyanobacterium Planktothrix agardhii on the growth and physiology of a Nassula sp. ciliate isolated from a non-toxic cyanobacterial bloom. We show that this Nassula sp. strain was able to consume and grow while feeding exclusively on an MC-producing cyanobacterium over a prolonged period of time (8 months). In short-term exposure experiments (8 days), ciliates consuming an MC-producing cyanobacterial strain displayed slower growth rate and higher levels of antioxidant enzymes than ciliates feeding on two non-MC-producing strains. Three high-performance methods (LC/MS, LC/MS-MS and ELISA) were used to quantify the free and bound MCs in the culture medium and in the cells. We show that ciliate grazing led to a marked decrease in free MCs (methanol extractable) in cells, the MCs were therefore no longer found in the surrounding culture medium. These findings suggest that MCs may have undergone redistribution (free vs bound MCs) or chemical degradation within the ciliates.

  5. Evaluate the potential environmental toxicity of quantum dots on ciliated protozoa by microcalorimetry

    Energy Technology Data Exchange (ETDEWEB)

    Xiao, Qi [College of Chemistry and Life Science, Guangxi Teachers Education University, Nanning 530001 (China); State Key Laboratory of Virology, College of Chemistry and Molecular Sciences, Wuhan University, Wuhan 430072 (China); Huang, Shan, E-mail: huangs@whu.edu.cn [College of Chemistry and Life Science, Guangxi Teachers Education University, Nanning 530001 (China); State Key Laboratory of Virology, College of Chemistry and Molecular Sciences, Wuhan University, Wuhan 430072 (China); Su, Wei [College of Chemistry and Life Science, Guangxi Teachers Education University, Nanning 530001 (China); Li, Peiyuan [College of Pharmacy, Guangxi Traditional Chinese Medical University, Nanning 530001 (China); Liang, Zuocui; Ou, Jianzhen; Ma, Jianqiang [College of Chemistry and Life Science, Guangxi Teachers Education University, Nanning 530001 (China); Liu, Yi, E-mail: prof.liuyi@263.net [State Key Laboratory of Virology, College of Chemistry and Molecular Sciences, Wuhan University, Wuhan 430072 (China)

    2012-11-10

    Highlights: Black-Right-Pointing-Pointer The toxic effects of QDs to T. thermophila BF{sub 5} using a TAM air microcalorimeter. Black-Right-Pointing-Pointer QDs were acutely toxic for T. thermophila BF{sub 5} growth in a dose-dependent manner. Black-Right-Pointing-Pointer The toxicity of different ligands-capped QDs on T. thermophila BF{sub 5} was investigated. Black-Right-Pointing-Pointer QDs could be ingested by cells and affect the morphology of T. thermophila BF{sub 5}. - Abstract: In the present study, we evaluated the toxic effects of mercaptoacetic acid (MAA)-capped CdSe QDs and CdSe/ZnS QDs to particle-ingesting model ciliated protozoa Tetrahymena thermophila BF{sub 5} (T. thermophila BF{sub 5}) by using a TAM air isothermal microcalorimeter. These results suggested that both MAA-CdSe QDs and MAA-CdSe/ZnS QDs were indeed acutely toxic for T. thermophila BF{sub 5} growth in a dose-dependent manner, and the toxicities of both MAA-CdSe QDs and MAA-CdSe/ZnS QDs increased dramatically after UV irradiation due to the liberation of more toxic Cd{sup 2+}, which indicated that the toxicity of MAA-CdSe/ZnS QDs was less than that of MAA-CdSe QDs. Furthermore, the toxicity of different ligands-capped CdSe/ZnS QDs on T. thermophila BF{sub 5} was also investigated. The uptake of MAA-CdSe/ZnS QDs and adenosine 5 Prime -monophosphate (AMP)-CdSe/ZnS QDs by cells and the morphological change during the process of T. thermophila BF{sub 5} growth incubated with these QDs were further studied by fluorescence inverted microscopy.

  6. Generation and analysis of expressed sequence tags from the ciliate protozoan parasite Ichthyophthirius multifiliis

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    Arias Covadonga

    2007-06-01

    Full Text Available Abstract Background The ciliate protozoan Ichthyophthirius multifiliis (Ich is an important parasite of freshwater fish that causes 'white spot disease' leading to significant losses. A genomic resource for large-scale studies of this parasite has been lacking. To study gene expression involved in Ich pathogenesis and virulence, our goal was to generate expressed sequence tags (ESTs for the development of a powerful microarray platform for the analysis of global gene expression in this species. Here, we initiated a project to sequence and analyze over 10,000 ESTs. Results We sequenced 10,368 EST clones using a normalized cDNA library made from pooled samples of the trophont, tomont, and theront life-cycle stages, and generated 9,769 sequences (94.2% success rate. Post-sequencing processing led to 8,432 high quality sequences. Clustering analysis of these ESTs allowed identification of 4,706 unique sequences containing 976 contigs and 3,730 singletons. These unique sequences represent over two million base pairs (~10% of Plasmodium falciparum genome, a phylogenetically related protozoan. BLASTX searches produced 2,518 significant (E-value -5 hits and further Gene Ontology (GO analysis annotated 1,008 of these genes. The ESTs were analyzed comparatively against the genomes of the related protozoa Tetrahymena thermophila and P. falciparum, allowing putative identification of additional genes. All the EST sequences were deposited by dbEST in GenBank (GenBank: EG957858–EG966289. Gene discovery and annotations are presented and discussed. Conclusion This set of ESTs represents a significant proportion of the Ich transcriptome, and provides a material basis for the development of microarrays useful for gene expression studies concerning Ich development, pathogenesis, and virulence.

  7. Effects of a radiosensitizer and radiation on the ciliated mucous membrane

    International Nuclear Information System (INIS)

    Fractionated irradiation (2 Gy/F, TD:2-20 Gy) in vivo on the ciliated epithelium of the rabbit's trachea, caused measurable physiological alternations ten consecutive days after completion of irradiation with an initial heightening of the ciliary activity after 2 and 4 Gy, followed by a dose-dependent decrease. On scanning electron microscopy-pictures, knobs were observed on the cilia with the number being related to the dose. The addition of misonidazole potentiated the effects described above, with an enhancement ratio ( physiologically) of 1.2 and an enhancement ratio (morphologically) of 1.6. Furthermore, administration of misonidazole to the rabbits caused an increased vascularity in the subepithelial layer of the trachea, directly correlated to an oedema in the same region. Single doses (2,2.5,5,10,15,20,25, and 30 Gy) were given to the trachea in vivo and daily investigation of the ciliary beating and morphologic examinations of the tissue were made for ten days. The ciliary activity showed a dose-dependent reduction of about 50% after 30 Gy. A development of damage, in relation to the dose, was observed in the cilia. The changes were blebs, swollen tips, bent and curved tips, and broken cilia clustered together. During in vitro irradiation with 10 Gy Single Dose, an increase of the ciliary activity to about 25 % of its original value was observed without any morphological changes, while in vivo irradiation and examinations during 10 days thereafter, showed three different phases, day 1-3: Stimulation phase, day 4-8: Damage-phase, day 9-10: Repair-phase. The ciliary epithelium offers an exceptional system for the study of early radiobiological effects, since mutual comparisons can be made between physiology and morphology. (Author)

  8. Evaluate the potential environmental toxicity of quantum dots on ciliated protozoa by microcalorimetry

    International Nuclear Information System (INIS)

    Highlights: ► The toxic effects of QDs to T. thermophila BF5 using a TAM air microcalorimeter. ► QDs were acutely toxic for T. thermophila BF5 growth in a dose-dependent manner. ► The toxicity of different ligands-capped QDs on T. thermophila BF5 was investigated. ► QDs could be ingested by cells and affect the morphology of T. thermophila BF5. - Abstract: In the present study, we evaluated the toxic effects of mercaptoacetic acid (MAA)-capped CdSe QDs and CdSe/ZnS QDs to particle-ingesting model ciliated protozoa Tetrahymena thermophila BF5 (T. thermophila BF5) by using a TAM air isothermal microcalorimeter. These results suggested that both MAA-CdSe QDs and MAA-CdSe/ZnS QDs were indeed acutely toxic for T. thermophila BF5 growth in a dose-dependent manner, and the toxicities of both MAA-CdSe QDs and MAA-CdSe/ZnS QDs increased dramatically after UV irradiation due to the liberation of more toxic Cd2+, which indicated that the toxicity of MAA-CdSe/ZnS QDs was less than that of MAA-CdSe QDs. Furthermore, the toxicity of different ligands-capped CdSe/ZnS QDs on T. thermophila BF5 was also investigated. The uptake of MAA-CdSe/ZnS QDs and adenosine 5′-monophosphate (AMP)-CdSe/ZnS QDs by cells and the morphological change during the process of T. thermophila BF5 growth incubated with these QDs were further studied by fluorescence inverted microscopy.

  9. Proteomic approach to reveal the proteins associated with encystment of the ciliate Euplotes encysticus.

    Directory of Open Access Journals (Sweden)

    Jiwu Chen

    Full Text Available In order to identify and reveal the proteins related to encystment of the ciliate Euplotes encysticus, we analyzed variation in the abundance of the proteins isolated from the resting cyst comparing with proteins in the vegetative cell. 2-D electrophoresis, MALDI-TOF MS techniques and Bioinformatics were used for proteome separation, quantification and identification. The comparative proteomics studies revealed 26 proteins with changes on the expression in the resting cysts, including 12 specific proteins and 14 differential proteins. 12 specific proteins and 10 out of the 14 differential proteins were selected and identified by MALDI-TOF MS. The identified specific proteins with known functions included type II cytoskeletal 1, keratin, Nop16 domain containing protein, protein arginine n-methyltransferase, epsilon-trimethyllysine hydroxylase and calpain-like protein. The identified differential proteins with known functions included Lysozyme C, keratinocyte growth factor, lysozyme homolog AT-2, formate acetyltransferase, alpha S1 casein and cold-shock protein. We discussed the functions of these proteins as well as their contribution in the process of encystment. These identified proteins covered a wide range of molecular functions, including gene regulation, RNA regulation, proteins degradation and oxidation resistance, stress response, material transport and cytoskeleton organization. Therefore, differential expression of these proteins was essential for cell morphological and physiological changes during encystment. This suggested that the peculiar proteins and differential proteins might play important roles in the process of the vegetative cells transforming into the resting cysts. These observations may be novel findings that bring new insights into the detailed mechanisms of dormancy.

  10. 红椿育苗密度研究%Cultivation Density of Toona ciliate

    Institute of Scientific and Technical Information of China (English)

    吴际友; 黄明军; 陈明皋; 程勇; 廖德志; 李艳; 刘球; 王旭军

    2014-01-01

    为了探讨2年生红椿苗最佳的育苗密度,开展了红椿育苗密度试验研究,结果表明:随着育苗密度增加,苗木的苗高和地径均减小,苗木的质量下降。因此,确定合理的育苗密度是培育优质红椿苗并取得最佳育苗效益的关键。研究表明:二年生的红椿苗木如只生产Ⅰ级苗,则合适的育苗密度为30株/m2;如Ⅰ、Ⅱ级苗均用于生产造林,则合适的育苗密度为40株/m2。%ln order to discuss the optimum seedling density of Toona ciliate, different seedling densities were studied. The results showed that seeding height and basal diameter decreased and quality of the seedlings declined with the increase of seedling density. The reasonable density of seedlings is key to cultivate high-quality seedlings and achieve the best seedling efficiency. The optimum density was 30 plants/m2 for the first class seedlings of biennial seedlings, and the optimum density of l and ll seedlings for production afforestation was 40 plants/m2.

  11. Further insights into the phylogeny of two ciliate classes Nassophorea and Prostomatea (Protista, Ciliophora).

    Science.gov (United States)

    Zhang, Qianqian; Yi, Zhenzhen; Fan, Xinpeng; Warren, Alan; Gong, Jun; Song, Weibo

    2014-01-01

    The Nassophorea and Prostomatea are two of the key classes in understanding the morphological diversification and higher classification of the phylum Ciliophora. However, their phylogenetic relationships with other ciliate groups within the subphylum Intramacronucleata remain elusive. In this study, we investigated the small and large subunit (SSU and LSU) rRNA gene-based phylogeny of these groups with sequences of additional taxa including several key species. The results show that: (1) the class Nassophorea remains polyphyletic, with the microthoracids clustering with the Phyllopharyngea, whereas the nassulids represent a basal group of the CONthreeP superclade in the SSU tree; (2) the Prostomatea is not depicted as a monophyletic group in phylogenetic trees, and the monophyly of this class is marginally rejected by statistical tree topology tests; (3) the nassulid genus Parafurgasonia is more closely related to the family Colpodidiidae than to Furgasonia; (4) Paranassula, which was previously thought to be a nassulid, is phylogenetically related to the oligohymenophorean peniculids in both the SSU and LSU trees; (5) the microthoracid genus Discotricha does not group with the other microthoracids in either SSU or LSU trees; (6) the family Plagiocampidae is closely related to the prostome parasite Cryptocaryon irritans and to the family Urotrichidae in the order Prorodontida; and (7) the family Placidae, represented by Placus salinus, is sister to the family Holophryidae in the order Prorodontida. Based on the present data, we consider the genus Discotricha to be an unclassified taxon within the CONthreeP. We also propose resurrecting the order Paranassulida and classifying it within the subclass Peniculia, class Oligohymenophorea. Primary and secondary structure signatures for higher taxa within Phyllopharyngea and Nassophorea are supplied. PMID:24075983

  12. Improvement of silver impregnation technique (Protargol to obtain morphological features of protists ciliates, flagellates and opalinates

    Directory of Open Access Journals (Sweden)

    SILVA-NETO I. D. da

    2000-01-01

    Full Text Available The research on ciliates, flagelates and opalinates have been widespread by the utilization of techniques employing silver impregnation (Protargol, modified by several authors. However, these are time consuming and its results are variable. The present work is a variant of the technique described by Tuffrau (1964, 1967 showing some adaptations made in our laboratory. The organisms can be preserved by different fixatives (alcoholic Bouin, Stieve's fluid, 2.5% glutaraldehyde and others and then rinsed in destilled water followed by a fast clarification by 3% sodium hypochloride. If the organism is very sensitive to hypochloride, 4% sodium lauryl sulfate may be used and then washed 3 times in distilled water. The protista can be adhered to the glass slides with Mayer's glycerinated-albumin (1 glycerin vol. to 1 or 2 albumin vol., diluted in water at a proportion of 1:10 Cv/v., or with 1% polylysine followed by fast washes with distilled water. After the slide preparation, they were covered with a layer of 0,8% Silver proteinate. Right after that, the slide has to be placed in a glass tray lined with moist tissue and covered to prevent the proteinate to dry. The tray was placed in a incubator at 40º-50ºC for 30 minutes. The slides are rinsed for 1 minute. with warm (35ºC distilled water. The development of the material should be done with 0.4% hydroquinone with a maximum incubation time of 1 minute. It should be developed gradually, controlling the silver impregnation intensity by observation under optical microscope. Next, rinse in distilled water for 1 minute, and then, fix in 2,5% Sodium thiosulfate. Rinse the slide for two minutes before dehydrating it in an alcoholic serial 50-100º. Finally rinse the slides in xylene. Mount the slides with Entellan MerckTM or Canada balsam.

  13. Gene expression in a paleopolyploid: a transcriptome resource for the ciliate Paramecium tetraurelia

    Directory of Open Access Journals (Sweden)

    Kapusta Aurélie

    2010-10-01

    Full Text Available Abstract Background The genome of Paramecium tetraurelia, a unicellular model that belongs to the ciliate phylum, has been shaped by at least 3 successive whole genome duplications (WGD. These dramatic events, which have also been documented in plants, animals and fungi, are resolved over evolutionary time by the loss of one duplicate for the majority of genes. Thanks to a low rate of large scale genome rearrangement in Paramecium, an unprecedented large number of gene duplicates of different ages have been identified, making this organism an outstanding model to investigate the evolutionary consequences of polyploidization. The most recent WGD, with 51% of pre-duplication genes still in 2 copies, provides a snapshot of a phase of rapid gene loss that is not accessible in more ancient polyploids such as yeast. Results We designed a custom oligonucleotide microarray platform for P. tetraurelia genome-wide expression profiling and used the platform to measure gene expression during 1 the sexual cycle of autogamy, 2 growth of new cilia in response to deciliation and 3 biogenesis of secretory granules after massive exocytosis. Genes that are differentially expressed during these time course experiments have expression patterns consistent with a very low rate of subfunctionalization (partition of ancestral functions between duplicated genes in particular since the most recent polyploidization event. Conclusions A public transcriptome resource is now available for Paramecium tetraurelia. The resource has been integrated into the ParameciumDB model organism database, providing searchable access to the data. The microarray platform, freely available through NimbleGen Systems, provides a robust, cost-effective approach for genome-wide expression profiling in P. tetraurelia. The expression data support previous studies showing that at short evolutionary times after a whole genome duplication, gene dosage balance constraints and not functional change are

  14. Preliminary insights into the impact of dietary starch on the ciliate, Neobalantidium coli, in captive chimpanzees.

    Directory of Open Access Journals (Sweden)

    Kateřina Schovancová

    Full Text Available Infections caused by the intestinal ciliate Neobalantidium coli are asymptomatic in most hosts. In humans and captive African great apes clinical infections occasionally occur, manifested mainly by dysentery; however, factors responsible for development of clinical balantidiasis have not been fully clarified. We studied the effect of dietary starch on the intensities of infection by N. coli in two groups of captive chimpanzees. Adult chimpanzees infected by N. coli from the Hodonín Zoo and from the Brno Zoo, Czech Republic, were fed with a high starch diet (HSD (average 14.7% of starch for 14 days, followed by a five-day transition period and subsequently with a period of low starch diet (LoSD (average 0.1% of starch for another 14 days. We collected fecal samples during the last seven days of HSD and LoSD and fixed them in 10% formalin. We quantified trophozoites of N. coli using the FLOTAC method. The numbers of N. coli trophozoites were higher during the HSD (mean ± SD: 49.0 ± 134.7 than during the LoSD (3.5 ± 6.8. A generalized linear mixed-effects model revealed significantly lower numbers of the N. coli trophozoites in the feces during the LoSD period in comparison to the HSD period (treatment contrast LoSD vs. HSD: 2.7 ± 0.06 (SE, z = 47.7; p<<0.001. We conclude that our data provide a first indication that starch-rich diet might be responsible for high intensities of infection of N. coli in captive individuals and might predispose them for clinically manifested balantidiasis. We discuss the potential nutritional modifications to host diets that can be implemented in part to control N. coli infections.

  15. A mesocosm study of the changes in marine flagellate and ciliate communities in a crude oil bioremediation trial.

    Science.gov (United States)

    Gertler, Christoph; Näther, Daniela J; Gerdts, Gunnar; Malpass, Mark C; Golyshin, Peter N

    2010-07-01

    Protozoan grazers play an important role in controlling the density of crude-oil degrading marine communities as has been evidenced in a number of microcosm experiments. However, small bioreactors contain a low initial titre of protozoa and the growth of hydrocarbon-depleting bacteria is accompanied by the fast depletion of mineral nutrients and oxygen, which makes microcosms rather unsuitable for simulating the sequence of events after the oil spill in natural seawater environment. In the present study, the population dynamics of marine protozoan community have been analysed in a 500 l mesocosm experiment involving bioaugmented oil booms that contained oil sorbents and slow-release fertilisers. A significant increase in numbers of marine flagellates and ciliates on biofilms of oil-degrading microbes was microscopically observed as early as 8 days after the start of the experiment, when protozoa exhibited a population density peak making up to 3,000 cells ml(-1). Further, the protozoan density varied throughout the experiment, but never dropped below 80 cells ml(-1). An 18S rRNA gene-based fingerprinting analysis revealed several changes within the eukaryotic community over the whole course of the experiment. Initial growth of flagellates and small ciliates was followed by a predominance of larger protozoa. According to microscopic observations and SSU rRNA molecular analyses, most predominant were the ciliates belonging to Euplotidae and Scuticociliatia. This is the first study to characterise the eukaryotic communities specifically in a large-scale oil bioremediation trial using both microscopy-based and several molecular techniques. PMID:20393846

  16. Potential risk of Mesodinium rubrum bloom in aquaculture area of Dapeng'ao cove, China: diurnal changes in the ciliate community structure in the surface water

    Directory of Open Access Journals (Sweden)

    Huaxue Liu

    2012-02-01

    Full Text Available Diurnal changes in the structure of the ciliate community in surface waters were studied in the aquaculture area of Dapeng'ao cove,China. Two periods of heavy rainfall occurred during the study period, intensifying water column stratification and influencing the water'sproperties. A total of 21 ciliate taxa from 15 genera were identified; the dominant species was Mesodinium rubrum. The maximumabundance of M. rubrum reached 3.92 × 104 indiv. dm-3,contributing 95.1% (mean value to the total ciliate abundance.Diurnal changes in M. rubrum abundance were highly variable, the driving force probably being irradiance and food availability.The results suggest that M. rubrum may form blooms in aquaculture areas when there is a suitable physical regime with enriched nutrients,which is potentially harmful to the fish-farming industry.

  17. ON THE MARINE CILIATE, Pseudocohnilembus hargisi (PROTOZOA, CILIOPHORA, SCUTICOCILIATIDA) WITH COMPARISON OF ITS RELATED SPECIES

    Institute of Scientific and Technical Information of China (English)

    龚骏; 马宏伟; 宋微波

    2002-01-01

    The living morphology, nuclear apparatus, infraciliature and silverline system of the poorly-known ciliate Pseudocohnilembus hargisi Evans & Thompson, 1964, collected from a shrimp culture pond in Qingdao, China, were examined by observation of the live specimen ; and by the pyridinated carbonate method and Chatton-Lwoff technique. The main characteristics: 13 - 14 (usually 13) longitudinal or slightly spirally arranged somatic kineties; single contractile vacuole with usually 2 ( 1 - 2) pores at posterior ends of the fourth and fifth somatic kineties to the fight of the buccal cavity. Several related congeners were compared and morphometrically tabulated.

  18. Cultivation-independent analysis reveals a shift in ciliate 18S rRNA gene diversity in a polycyclic aromatic hydrocarbon-polluted soil

    OpenAIRE

    Lara, Enrique; Berney, Cédric; Harms, Hauke; Chatzinotas, Antonis

    2010-01-01

    Using cultivation-independent methods the ciliate communities of a clay-rich soil with a 90-year record of pollution by polycyclic aromatic hydrocarbons (PAH) (4.5 g kg−1 PAH) were compared with that of a nonpolluted soil collected in its vicinity and with similar properties. A ciliate-specific set of 18S rRNA gene targeting primers was designed and used to amplify DNA extracted from both soils (surface and 20 cm depth). Four clone libraries were generated with PCR products that covered an 18...

  19. Ciliated Median Raphe Cyst of Perineum Presenting as Perianal Polyp: A Case Report with Immunohistochemical Study, Review of Literature, and Pathogenesis

    OpenAIRE

    Jayesh Sagar; Bethani Sagar; Patel, Adam F.; Shak, D.K.

    2006-01-01

    Median raphe cyst is a very rare, benign congenital lesion occurring mainly on the ventral aspect of the penis, but can develop anywhere in the midline between the external urethral meatus and anus. We report a case of median raphe cyst in the perineum presenting as a perianal polyp in a 65-year-old, English white male with exceptionally rare ciliated epithelium. According to our knowledge, this is the third such case of ciliated median raphe cyst in the English literature. This case, also th...

  20. Distribution of ciliates in relation to environmental factors along the coastline of the Gulf of Gabes, Tunisia

    Science.gov (United States)

    Kchaou, Nouha; Elloumi, Jannet; Drira, Zaher; Hamza, Asma; Ayadi, Habib; Bouain, Abderrahmen; Aleya, Lotfi

    2009-08-01

    We studied the seasonal distribution of the ciliate community coupled with environmental factors along the coast at three stations sampled (from March 2006 to February 2007) in the Gulf of Gabes (Tunisia, Eastern Mediterranean Sea). A total of 56 species belonging to 11 orders, were identified. Harbor of Gabes station was more diversified (45 species) than both Tabia (26 species) and Karboub (31 species) stations. The ciliate assemblage was numerically dominated by Spirotrichea in Tabia (82% of the total abundance), in the Harbor of Gabes (86% of the total abundance), whereas, in Karboub, Spirotrichea represented only 40% of the total abundance. The unexpected lower quantitative importance of Spirotrichea in Karboub station was apparently the result of the high salt concentration found in water samples throughout the study, probably originating from the saline area surrounding Karboub station, known as Sabkha. The distribution of species in the nearshore of the Gulf of Gabes seemed most likely influenced by the combined effects of temperature, salinity and hydrographic conditions.

  1. Fate of engineered cerium oxide nanoparticles in an aquatic environment and their toxicity toward 14 ciliated protist species.

    Science.gov (United States)

    Zhang, Wei; Pu, Zhichao; Du, Songyan; Chen, Yongsheng; Jiang, Lin

    2016-05-01

    The potential environmental impacts of engineered cerium oxide nanoparticles (CeO2 NPs) on aquatic organisms have remained largely unknown. Therefore, the laboratory study featured herein was performed to determine the fate of CeO2 NPs in an aquatic environment and their toxicity towards 14 different ciliated protist species at a specified population level. An investigation of 48 h aggregation kinetics in the Dryl's solution showed the CeO2 NPs to be relatively stable. The pH values in three test medium were too far away from PZC, which explained the stability of CeO2 NPs. CeO2 NPs generally elicited more toxicity with increasing NP concentration, following certain dose-response relationships. Nano-CeO2 resulted in greater toxicity in a particle state than when added as bulk material. LC50 values showed a negative correlation with the surface-to-volume ratio for these protists, suggesting that surface adsorption of CeO2 NPs might contribute to the observed toxicity. Additionally, acute toxic responses of 14 ciliated protist species to CeO2 NPs were not significantly phylogenetically conserved. The results of these observations provide a better insight into the potential risks of CeO2 NPs in an aquatic environment. PMID:26986089

  2. Non-invasive detection and quantification of the parasitic ciliate Ichthyophthirius multifiliis by real-time PCR.

    Science.gov (United States)

    Jousson, Olivier; Pretti, Carlo; Di Bello, Domenica; Cognetti-Varriale, Anna M

    2005-07-18

    The main parasitic threat to freshwater fish is the ciliate Ichthyophthirius multifiliis. We developed a real-time PCR assay using SYBR Green intercalating fluorescent dye for rapid detection and quantification of I. multifiliis. This non-invasive assay was based on the quantification of I. multifiliis free-swimming stages from filtered water samples, and thus made it possible to preserve host individuals. An alignment of 18S rDNA sequences of I. multifiliis and related species of the ciliate order Hymenostomatida was used to design amplification primers specifically targeting the I. multifiliis 18S rDNA gene. Different standard curves consisting of 2-fold serial dilutions of DNA extracted from 20, 60, 100 and 1000 I. multifiliis cells were constructed. The assay was able to detect less than 0.5 cell equivalent and showed a strong linearity (R2 = 0.984). Water samples were collected from 2 tanks containing heavily infected and apparently uninfected Carassius auratus specimens and were used to test this technique. Positive signals were obtained from water samples collected from both tanks, with a deduced concentration ranging from 3 to 58 I. multifiliis cells l(-1). The assay can detect low concentrations of the parasite in water, presumably corresponding to an early phase of the disease. It may, thus, be a valuable tool in assisting in the monitoring and control of ichthyophthiriasis in aquaculture. PMID:16119894

  3. OCT-based quantification of flow velocity, shear force, and power generated by a biological ciliated surface (Conference Presentation)

    Science.gov (United States)

    Huang, Brendan K.; Khokha, Mustafa K.; Loewenberg, Michael; Choma, Michael A.

    2016-03-01

    In cilia-driven fluid flow physiology, quantification of flow velocity, shearing force, and power dissipation is important in defining abnormal ciliary function. The capacity to generate flow can be robustly described in terms of shearing force. Dissipated power can be related to net ATP consumption by ciliary molecular motors. To date, however, only flow velocity can be routinely quantified in a non-invasive, non-contact manner. Additionally, traditional power-based metrics rely on metabolic consumption that reflects energy consumption not just from cilia but also from all active cellular processes. Here, we demonstrate the estimation of all three of these quantities (flow velocity, shear force, and power dissipation) using only optical coherence tomography (OCT). Specifically, we develop a framework that can extract force and power information from vectorial flow velocity fields obtained using OCT-based methods. We do so by (a) estimating the viscous stress tensor from flow velocity fields to estimate shearing force and (b) using the viscous stress tensor to estimate the power dissipation function to infer total mechanical power. These estimates have the advantage of (a) requiring only a single modality, (b) being non-invasive in nature, and (c) being reflective of only the net power work generated by a ciliated surface. We demonstrate our all-optical approach to the estimation of these parameters in the Xenopus animal model system under normal and increased viscous loading. Our preliminary data support the hypothesis that the Xenopus ciliated surface can increase force output under loading conditions.

  4. The CNA1 Histone of the Ciliate Tetrahymena thermophila Is Essential for Chromosome Segregation in the Germline MicronucleusD⃞

    Science.gov (United States)

    Cervantes, Marcella D.; Xi, Xiaohui; Vermaak, Danielle; Yao, Meng-Chao; Malik, Harmit S.

    2006-01-01

    Ciliated protozoans present several features of chromosome segregation that are unique among eukaryotes, including their maintenance of two nuclei: a germline micronucleus, which undergoes conventional mitosis and meiosis, and a somatic macronucleus that divides by an amitotic process. To study ciliate chromosome segregation, we have identified the centromeric histone gene in the Tetrahymena thermophila genome (CNA1). CNA1p specifically localizes to peripheral centromeres in the micronucleus but is absent in the macronucleus during vegetative growth. During meiotic prophase of the micronucleus, when chromosomes are stretched to twice the length of the cell, CNA1p is found localized in punctate spots throughout the length of the chromosomes. As conjugation proceeds, CNA1p appears initially diffuse, but quickly reverts to discrete dots in those nuclei destined to become micronuclei, whereas it remains diffuse and is gradually lost in developing macronuclei. In progeny of germline CNA1 knockouts, we see no defects in macronuclear division or viability of the progeny cells immediately following the knockout. However, within a few divisions, progeny show abnormal mitotic segregation of their micronucleus, with most cells eventually losing their micronucleus entirely. This study reveals a strong dependence of the germline micronucleus on centromeric histones for proper chromosome segregation. PMID:16251352

  5. The response of the ciliated epithelium during and after exposure to ionizing radiation

    International Nuclear Information System (INIS)

    Irradiation of the ciliated tissues of the body gives undesirable sideefects. In vitro irradiation (10 Gy) of the rabbit's trachea shows that 1.5 Gy of indirectly ionizing radiation (50 kV and 6 MV X-ray 60Co-gamma 1.25 MeV) causes a 20 per cent increase of the ciliary beat frequency lasting 5-10 seconds, followed by a decline to normal ciliary activity during the ensuing course of irradiation. Electron radiation (4 MeV) proved to be three times more effective than photon radiation in regard to the physiological response of the cilia to ionizing radiation. This finding led to introduction of the concept Relative Physiological Efficiency (RPE) in this study, complementing the Relative Biological Efficiency (RBE) concept. This momentary increase in frequency can be caused by a radiation-induced increased hydrolysis of the ATP available in the cilia. The ciliary activity was 20 per cent lower than normal at 45 min following irradiation (10 Gy, 50 kV X-ray), whereupon it increased to 12 per cent above normal activity at two hours after initial irradiation. At re-irradiation (10 Gy, 50 kV X-ray) administered two hours after initial irradiation, the cilia showed a constant rate of activity. In vivo irradiation (10 Gy, 160 kV X-ray) of the trachea of the rabbit caused a heightened activity (10%) during the first three days after irradiation, indicating a stimulation of the ATP-synthesis. During days 4 to 8 after irradiation, the ciliary epithelium's morphology was damaged resulting in reduced transport ability. Repair took place during days 9 and 10 after irradiation, i.e. the function of the ciliary epithelium appeared to be restored. The membrane potential of the ciliary cell, registered during irradiation (10 Gy, 50 kV X-ray) showed no changes, which supports the assumption that the increased ciliary beat frequency recorded during irradiation can be due to rapid radiation-induced biochemical changes that are connected to the motility of the cilia. (author)

  6. Structure of planktonic ciliates community (Protist, Ciliophora from an urban lake of southern Brazil - doi: 10.4025/actascibiolsci.v35i4.18579

    Directory of Open Access Journals (Sweden)

    Luiz Felipe Machado Velho

    2013-07-01

    Full Text Available This study examined temporal and spatial (vertical variations of composition, richness and abundance of the planktonic ciliates community in an urban and eutrophic lake, as well as identified the limnological factors involved in determining the patterns observed. To this end, samples of ciliates and measures of limnological variables were taken at different depths and hydrological periods. 35 ciliate species were identified, among which 14 species occurred in all periods and strata, being Prostomatida the most specious, followed by Gymnostomatida, Oligotrichida, Peritrichida, and Scuticociliatida. The patterns found for composition, abundance and species richness evidenced a vertical and temporal variation of these attributes. However, in general the composition and species richness have varied more along the vertical gradient than between periods, whereas for the abundance, only temporal differences could be detected. Results observed herein indicated that benthic species seem to be mainly influenced by the amount of organic matter, phosphorus and ammonia, while planktonic ones, abundant at the surface, were mainly associated with higher dissolved oxygen concentrations. In this way, seasonal and vertical variations of limnological characteristics were decisive for the patterns of occurrence and abundance of ciliate species.

  7. The effect of low- and high-fiber diets on the population of entodiniomorphid ciliates Troglodytella abrassarti in captive chimpanzees (Pan troglodytes)

    Czech Academy of Sciences Publication Activity Database

    Petrželková, Klára Judita; Schovancová, Kateřina; Profousová, Ilona; Kišidayová, S.; Váradyová, Z.; Pekár, S.; Kamler, Jiří; Modrý, David

    2012-01-01

    Roč. 74, č. 7 (2012), s. 669-675. ISSN 0275-2565 R&D Projects: GA ČR GA524/06/0264; GA ČR GA206/09/0927 Institutional support: RVO:68081766 ; RVO:60077344 Keywords : entodiniomorphid ciliate * chimpanzee * fiber * starch Subject RIV: EG - Zoology Impact factor: 2.459, year: 2012

  8. Ciliary-propelling mechanism, effect of temperature and viscosity on swimming speed, and adaptive significance of ‘jumping’ in the ciliate Mesodinium rubrum

    DEFF Research Database (Denmark)

    Riisgård, Hans Ulrik; Larsen, Poul Scheel

    2009-01-01

    Beating cilia are important organelles, not only for water pumping in many active filter-feeding organisms, but also for the swimming activity of ciliates and other aquatic organisms that use cilia for propulsion. The present study concerns the effect of temperature-dependent viscosity of the amb...

  9. A Review of Some Basic Parasite Diseases in Culture Fisheries Flagellids, Dinoflagellides and Ichthyophthriasis, Ichtyobodiasis, Coccidiosis Trichodiniasis, Heminthiasis, Hirudinea Infestation, Crustacean Parsite and Ciliates

    OpenAIRE

    J.F.N. Abowei; O.F. Briyai; S.E. Bassey

    2011-01-01

    A review some basic parasite diseases in fish: flagellids, dinoflagellides and ichthyophthriasis in African fish was carried out to educate fish culturist and the private sector on some challenges faced in culture fisheries. Some common parasite diseases: Ichtyobodiasis, Coccidiosis, Ichtyopthiariasis, Trichodiniasis, Heminthiasis, Crustacean parasite, Hirudinea infestation, Flagellates and Ciliates, Taxonomy and diagnosis, Life cycle and biology, Epizootiology, pathology, control, Infections...

  10. [Physiological and biochemical activity of bacteria during germination of cucumber seeds and impact of ciliates Colpoda steinii on this process].

    Science.gov (United States)

    Chobotarova, V V; Bega, Z T; Kurdish, I K

    2015-01-01

    It is shown that the bacteria Bacillus subtilis B-7023 IMV produce indole-3-acetic acid and amino acids in the liquid medium Knoop. Processing cucumber seed suspension containing 10(7) cfu/ml as bacilli, and Azotobacter vinelandii IMV V-7076, resulted in a decrease in the length of the roots of plants. Reduction of bacterial load bacilli to 10(6) cfu/ml followed by reduction of indole-3-acetic acid in the medium, and to an increase in the length of roots, shoots and total plant mass. During the cultivation of Bacillus subtilis IMV V-7023 with ciliates Colpoda steinii reduced the amount of free forms of auxin in the medium to 5.5 times, and the related--to trace amounts. The content of histidine, phenylalanine, tyrosine, methionine and lysine significantly reduced. PMID:26036028

  11. Influence of Magnetic Field and Slip on Jeffrey Fluid in a Ciliated Symmetric Channel with Metachronal Wave Pattern

    Directory of Open Access Journals (Sweden)

    N Akbar

    2016-01-01

    Full Text Available The instinct system of cilia motion with magnetic field and slip for Jeffrey fluid model in a symmetric channel is examined. The problem of two-dimensional fluid motion in a symmetric channel with ciliated walls is considered. The structures of ciliary motion are stubborn by the sovereignty of viscid possessions above inertial properties by the long-wavelength and low Reynolds approximation. Exact solutions for the longitudinal pressure gradient, temperature and velocities are obtained. The pressure gradient and volume flow rate for different values of the flow parameters are also discussed. The flow property for the Jeffrey fluid is presented graphically as a function of the cilia and metachronal wave velocity.

  12. Complementary Notes on a‘Well-known' Marine Heterotrichous Ciliate, Folliculinopsis producta (Wright, 1859) Fraure-Fremiet,1936 (Protozoa, Ciliophora)

    Institute of Scientific and Technical Information of China (English)

    JI Daode; LIN Xiaofeng; SONG Weibo

    2004-01-01

    The living morphology and infraciliature of a heterotrichous ciliate, Folliculinopsis producta (Wright, 1859)Fraure-Fremiet, 1936, which was collected from the north coast of China, were investigated by in vivo observation and protargol impregnation techniques. As a new contribution, a redescription is presented: large Folliculinopsis of green to dark green in color, 800-1500μm in size; two peristomial lobes of approximately equal size, 300-400μm in length; adoral zone of membranelles containing about 1000 membranelles, lying along lobe margins and exhibiting two circles within buccal cavity;50-70 somatic kineties in mid-body; macronucleus miniliform, consisting of about 20 beads; lorica smooth, vase-shaped,(300 500)μm ×(90-130)μm in size, with 5-12 spiral ridges on neck tube; marine habitat.

  13. Checklist and distribution of ciliates from the family Euplotidae Ehrenberg, 1838 (Protista: Ciliophora: Spirotrichea) in Slovakia, Central Europe.

    Science.gov (United States)

    Tirjaková, Eva; Botlíková, Simona; Vďačný, Peter

    2015-01-01

    A checklist of ciliates from the family Euplotidae recorded in the territory of Slovakia, Central Europe was assembled. Altogether, 11 species belonging to three genera of the family Euplotidae have been reported there: Euplotes alatus, Euplotes charon, Euplotes moebiusi, Euplotoides aediculatus, Euplotoides eurystomus, Euplotoides patella, Euplotoides woodruffi, Euplotopsis affinis, Euplotopsis finki, Euplotopsis muscicola, and Euplotopsis novemcarinata. However, records of the marine species E. alatus and E. charon are doubtful and very likely represent misidentifications of E. moebiusi. Since the euryhaline species E. woodruffi was found for the first time in Slovakia, its morphology is described. Based on the literature data and our own observations, the present checklist is also accompanied with distribution data on the 11 aforementioned species. As concerns ecology, Slovak euplotids typically occurred in freshwater bodies having higher trophic levels. Only two species, E. finki and E. muscicola, were isolated from terrestrial habitats, especially, from mosses, leaf-litter, and decaying wood mass. PMID:25781253

  14. The behaviour of both Listeria monocytogenes and rat ciliated ependymal cells is altered during their co-culture.

    Directory of Open Access Journals (Sweden)

    Mina J Fadaee-Shohada

    Full Text Available BACKGROUND: Ciliated ependymal cells line the cerebral ventricles and aqueducts separating the infected CSF from the brain parenchyma in meningitis. PRINCIPAL FINDINGS: Investigation of the interaction of Listeria monocytogenes with cultured rat brain ependymal cells showed that certain strains reduced the beat frequency of the cilia but all the strains studied significantly reduced the ciliary beat amplitude (the linear distance travelled by the tip of each cilium per beat cycle. CONCLUSION: The presence of the ependyma caused aggregation of some listeria strains and in some cases extracellular material also was seen in association with bacterial aggregates. These observations were dependent on the expression of genes required for invasion, intracellular survival and listerial cell to cell spread that are regulated by the transcriptional activator, positive regulatory factor A (PrfA.

  15. Studies on synergistic toxic effects of copper and dithiocarbamate pesticides with the ciliate protozoan Colpidium campylum (Stokes).

    Science.gov (United States)

    Bonnemain, H; Dive, D

    1990-06-01

    The toxicity of seven dithiocarbamates and interactions occurring with copper were studied with the ciliate protozoan Colpidium campylum. No product was toxic at 0.1 mg liter-1. Thiram and mancozeb are the most toxic products (lethal at 1 mg liter-1) and ziram and propineb the least toxic. Concerning interactions with copper, no or slight interactions were observed with propineb and mancozeb, although a strong synergistic toxic effect was observed in a previous work with two structurally related products, maneb and zineb. On the contrary, the responses observed with alkyl-related dithiocarbamates (ferbam and ziram) and ethylene bis-related dithiocarbamates (nabam, thiram, and metiram) are in correlation with the results known in the literature. The synergistic toxic effect of copper and dithiocarbamates thus seems to be related mainly to the alkyl- or the ethylene bis-dithiocarbamate structure, but is not constant for molecules associated with metals (propineb, mancozeb, maneb, and zineb). PMID:2114279

  16. First Record and Redefinition of the Qingdao Population of Marine Ciliate Cardiostomatella vermiformis (Kahl, 1928) Corliss, 1960 (Protozoa, Ciliophora)

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    The living morphology and infraciliature of a marine ciliate, Cardiostomatella vermiformis isolated from a sand beach of the Jiaozhou Bay near Qingdao, China, were investigated by live observation, protargol and silver carbonate impregnation methods. Both the morphological and morphometric data largely agree with former records. Based on the data obtained, an improved diagnosis for Cardiostomatella vermiformis is supplied: Large marine Cardiostomatella with cylindrical body shape and several prolonged caudal cilia; cells in vivo about (90-500)μm × (30-120)μm; macronucleus beaded; single contractile vacuole caudally positioned; buccal apparatus conspicuously small, genus typical; three to six postoral kineties; 96-130 somatic kineties. This species is recorded for the first time in China.

  17. Insights into the phylogeny of sporadotrichid ciliates (Protozoa, Ciliophora: Hypotricha) based on genealogical analyses of multiple molecular markers

    Science.gov (United States)

    Hu, Xiaoyan; Hu, Xiaozhong; Al-Rasheid, Khaled A. S.; Al-Farraj, Saleh A.; Song, Weibo

    2011-01-01

    The sporadotrichid ciliates are an especially diverse group. A number of investigators have studied the morphological, morphogenetic, and molecular relationships among members of this group. Despite this, a consistent classification is still lacking and several important questions about the phylogenetic relationships within this group remain unsolved. To improve our understanding of these relationships, we constructed phylogenetic trees using the nucleotide sequences of the small-subunit rRNA (SSrRNA) gene and amino acid sequences of actin I and α-tubulin. Analyses of SSrRNA gene sequences indicated that: 1) the Sporadotrichida sensu Lynn (2008) and the Oxytrichidae are polyphyletic; 2) the Uroleptus species, which are classified to urostylids, formed a sister group with the oxytrichids; 3) Halteria grandinella, which is grouped morphologically with oligotrich species, clustered within the oxytrichids. These results are congruent with previous studies based on SSrRNA gene sequences. However, the amino acid sequences of actin I and α-tubulin yielded different topologies. The main results are: 1) in all phylogenetic trees, the genus Oxytricha was paraphyletic; 2) Uroleptus was sister to a subset of Urostyla and Holosticha, albeit with low supporting values; 3) Halteria grandinella was separated distantly from the Oxytrichidae in trees inferred from actin I amino acid sequences but clustered with oligotrichids in the α-tubulin analysis. The inconsistency among the trees inferred from these different molecular markers may be caused by rapidly accumulated genetic characterizations of ciliates. Further studies with additional molecular markers and sampling of more taxa are expected to better address the relationships among sporadotrichids.

  18. The symbiotic life of Symbiodinium in the open ocean within a new species of calcifying ciliate (Tiarina sp.).

    Science.gov (United States)

    Mordret, Solenn; Romac, Sarah; Henry, Nicolas; Colin, Sébastien; Carmichael, Margaux; Berney, Cédric; Audic, Stéphane; Richter, Daniel J; Pochon, Xavier; de Vargas, Colomban; Decelle, Johan

    2016-06-01

    Symbiotic partnerships between heterotrophic hosts and intracellular microalgae are common in tropical and subtropical oligotrophic waters of benthic and pelagic marine habitats. The iconic example is the photosynthetic dinoflagellate genus Symbiodinium that establishes mutualistic symbioses with a wide diversity of benthic hosts, sustaining highly biodiverse reef ecosystems worldwide. Paradoxically, although various species of photosynthetic dinoflagellates are prevalent eukaryotic symbionts in pelagic waters, Symbiodinium has not yet been reported in symbiosis within oceanic plankton, despite its high propensity for the symbiotic lifestyle. Here we report a new pelagic photosymbiosis between a calcifying ciliate host and the microalga Symbiodinium in surface ocean waters. Confocal and scanning electron microscopy, together with an 18S rDNA-based phylogeny, showed that the host is a new ciliate species closely related to Tiarina fusus (Colepidae). Phylogenetic analyses of the endosymbionts based on the 28S rDNA gene revealed multiple novel closely related Symbiodinium clade A genotypes. A haplotype network using the high-resolution internal transcribed spacer-2 marker showed that these genotypes form eight divergent, biogeographically structured, subclade types that do not seem to associate with any benthic hosts. Ecological analyses using the Tara Oceans metabarcoding data set (V9 region of the 18S rDNA) and contextual oceanographic parameters showed a global distribution of the symbiotic partnership in nutrient-poor surface waters. The discovery of the symbiotic life of Symbiodinium in the open ocean provides new insights into the ecology and evolution of this pivotal microalga and raises new hypotheses about coastal pelagic connectivity. PMID:26684730

  19. Laminin-332 alters connexin profile, dye coupling and intercellular Ca2+ waves in ciliated tracheal epithelial cells

    Directory of Open Access Journals (Sweden)

    Olsen Colin E

    2006-08-01

    Full Text Available Abstract Background Tracheal epithelial cells are anchored to a dynamic basement membrane that contains a variety of extracellular matrix proteins including collagens and laminins. During development, wound repair and disease of the airway epithelium, significant changes in extracellular matrix proteins may directly affect cell migration, differentiation and events mediated by intercellular communication. We hypothesized that alterations in cell matrix, specifically type I collagen and laminin α3β3γ2 (LM-332 proteins within the matrix, directly affect intercellular communication in ciliated rabbit tracheal epithelial cells (RTEC. Methods Functional coupling of RTEC was monitored by microinjection of the negatively charged fluorescent dyes, Lucifer Yellow and Alexa 350, into ciliated RTEC grown on either a LM-332/collagen or collagen matrix. Coupling of physiologically significant molecules was evaluated by the mechanism and extent of propagated intercellular Ca2+ waves. Expression of connexin (Cx mRNA and proteins were assayed by reverse transcriptase – polymerase chain reaction and immunocytochemistry, respectively. Results When compared to RTEC grown on collagen alone, RTEC grown on LM-332/collagen displayed a significant increase in dye transfer. Although mechanical stimulation of RTEC grown on either LM-332/collagen or collagen alone resulted in intercellular Ca2+ waves, the mechanism of transfer was dependent on matrix: RTEC grown on LM-332/collagen propagated Ca2+waves via extracellular purinergic signaling whereas RTEC grown on collagen used gap junctions. Comparison of RTEC grown on collagen or LM-332/collagen matrices revealed a reorganization of Cx26, Cx43 and Cx46 proteins. Conclusion Alterations in airway basement membrane proteins such as LM-332 can induce connexin reorganizations and result in altered cellular communication mechanisms that could contribute to airway tissue function.

  20. DESCRIPTION OF FIVE NEW SPECIES OF HYSTEROCINETIAN CILIATES (CILIOPHORA, HYSTEROCINETIDAE), ENDOCOMMENSAL IN A TERRESTRIAL OLIGOCHAETE OF THE GENUS ALMA FROM CAMEROON

    OpenAIRE

    Nana, Paul; Fokam, Zephyrin; EBAGUE GUY MARTIAL NTOUNGWA; Ngassam, Pierre; Bricheux, Genevieve; Bouchard, Philippe; Ngando, Telesphore

    2012-01-01

    Studies on five new species of hysterocinetian ciliates, endocommensal within a terrestrial oligochaete from the genus Alma (Cameroon), reveal the existence of three distinct types of cytoskeletal topography within their adhesive apparatus. In the first topographical type, four superimposed antagonistic strata of skeletal fibres that correspond to the arrangement observed in the genus Ptychostomum, Stein 1860 are found. The second topographical type is characterized by the existence of an uno...

  1. Zygotic Expression of the Double-Stranded RNA Binding Motif Protein Drb2p Is Required for DNA Elimination in the Ciliate Tetrahymena thermophila ▿

    OpenAIRE

    Motl, Jason A.; Chalker, Douglas L.

    2011-01-01

    Double-stranded RNA binding motif (DSRM)-containing proteins play many roles in the regulation of gene transcription and translation, including some with tandem DSRMs that act in small RNA biogenesis. We report the characterization of the genes for double-stranded RNA binding proteins 1 and 2 (DRB1 and DRB2), two genes encoding nuclear proteins with tandem DSRMs in the ciliate Tetrahymena thermophila. Both proteins are expressed throughout growth and development but exhibit distinct peaks of ...

  2. Morphogenesis of respiratory syncytial virus in human primary nasal ciliated epithelial cells occurs at surface membrane microdomains that are distinct from cilia

    International Nuclear Information System (INIS)

    The distribution of cilia and the respiratory syncytial virus (RSV) nucleocapsid (N) protein, fusion (F) protein, attachment (G) protein, and M2-1 protein in human ciliated nasal epithelial cells was examined at between 1 and 5 days post-infection (dpi). All virus structural proteins were localized at cell surface projections that were distinct from cilia. The F protein was also trafficked into the cilia, and while its presence increased as the infection proceeded, the N protein was not detected in the cilia at any time of infection. The presence of the F protein in the cilia correlated with cellular changes in the cilia and reduced cilia function. At 5 dpi extensive cilia loss and further reduced cilia function was noted. These data suggested that although RSV morphogenesis occurs at non-cilia locations on ciliated nasal epithelial cells, RSV infection induces changes in the cilia body that leads to extensive cilia loss. - Highlights: • Respiratory syncytial virus (RSV) infects nasal ciliated epithelial cells. • Virus morphogenesis occurs within filamentous projections distinct from cilia. • The RSV N protein was not detected in the cilia at any time during infection. • Trafficking of the F protein into the cilia occurred early in infection. • Presence of the F protein in cilia correlated with impaired cilia function

  3. Morphogenesis of respiratory syncytial virus in human primary nasal ciliated epithelial cells occurs at surface membrane microdomains that are distinct from cilia

    Energy Technology Data Exchange (ETDEWEB)

    Jumat, Muhammad Raihan [School of Biological Sciences, Nanyang Technological University, 60 Nanyang Drive, Singapore 637551 (Singapore); Yan, Yan [Department of Otolaryngology, Yong Loo Lin School of Medicine, National University Health System, National University of Singapore, Singapore 119228 (Singapore); Ravi, Laxmi Iyer [School of Biological Sciences, Nanyang Technological University, 60 Nanyang Drive, Singapore 637551 (Singapore); Wong, Puisan [Detection and Diagnostics Laboratory, DSO National Laboratories, 27 Medical Drive, Singapore 117510 (Singapore); Huong, Tra Nguyen [School of Biological Sciences, Nanyang Technological University, 60 Nanyang Drive, Singapore 637551 (Singapore); Li, Chunwei [Department of Otolaryngology, Yong Loo Lin School of Medicine, National University Health System, National University of Singapore, Singapore 119228 (Singapore); Tan, Boon Huan [Detection and Diagnostics Laboratory, DSO National Laboratories, 27 Medical Drive, Singapore 117510 (Singapore); Wang, De Yun [Department of Otolaryngology, Yong Loo Lin School of Medicine, National University Health System, National University of Singapore, Singapore 119228 (Singapore); Sugrue, Richard J., E-mail: rjsugrue@ntu.edu.sg [School of Biological Sciences, Nanyang Technological University, 60 Nanyang Drive, Singapore 637551 (Singapore)

    2015-10-15

    The distribution of cilia and the respiratory syncytial virus (RSV) nucleocapsid (N) protein, fusion (F) protein, attachment (G) protein, and M2-1 protein in human ciliated nasal epithelial cells was examined at between 1 and 5 days post-infection (dpi). All virus structural proteins were localized at cell surface projections that were distinct from cilia. The F protein was also trafficked into the cilia, and while its presence increased as the infection proceeded, the N protein was not detected in the cilia at any time of infection. The presence of the F protein in the cilia correlated with cellular changes in the cilia and reduced cilia function. At 5 dpi extensive cilia loss and further reduced cilia function was noted. These data suggested that although RSV morphogenesis occurs at non-cilia locations on ciliated nasal epithelial cells, RSV infection induces changes in the cilia body that leads to extensive cilia loss. - Highlights: • Respiratory syncytial virus (RSV) infects nasal ciliated epithelial cells. • Virus morphogenesis occurs within filamentous projections distinct from cilia. • The RSV N protein was not detected in the cilia at any time during infection. • Trafficking of the F protein into the cilia occurred early in infection. • Presence of the F protein in cilia correlated with impaired cilia function.

  4. The use of multiple endpoints to assess cellular responses to environmental contaminants in the interstitial marine ciliate Euplotes crassus.

    Science.gov (United States)

    Gomiero, A; Sforzini, S; Dagnino, A; Nasci, C; Viarengo, A

    2012-06-15

    This paper presents the results of investigations on the suitability of Euplotes crassus, an interstitial marine ciliate, to be used as model organism in ecotoxicology and thereafter to evaluate the toxicity of estuarine and coastal sediments upon laboratory exposure. Nowadays, anthropogenic activities have resulted in accumulation of metals and organic pollutants in the environment as well as in the food chain hence leading to serious ecological and human health problems. This may pose a risk to benthic and epibenthic organisms and it is crucial to discover toxicity tests that will identify adverse effects of sediment-associated chemicals on benthic organisms. Due to their nature as a eukaryotic cell/organism and their position in the food web, ciliated protozoa are suitable models for evaluating the effects of pollution on aquatic communities. Lethal and sublethal effects of exposure to inorganic and organic pollutants were tested on the cell mortality, replication rate, lysosomal membrane stability and endocytosis rate of E. crassus. Increasing nominal concentrations of individual and mixtures of mercury, copper, and benzo(a)pyrene were investigated in this study as they might be bioavailable in naturally occurring polluted sites. A significant decrease in the mean replication rate (ppollutants. At the same time, significant decreases of lysosomal membrane stability (ppollutants were performed showing both inorganic-organic and inorganic-inorganic additive and/or antagonist effects. Moreover, medium salinity was also varied to mimic estuarine-like environmental conditions linking biological response to ionic strengths. Under these conditions significant increases of both endocytosis rate and lysosomal membrane stability were observed and related to the increment of some Hg- and Cu-related toxic complexes. The studied biomarkers were always able to discriminate between the effects of organic and inorganic pollutants. Together with the short time and simplicity of

  5. Scanning electron microscopy and recording of the physiological activity of tracheal ciliated cells treated by fractionated irradiation

    International Nuclear Information System (INIS)

    The ciliated epithelium of the rabbit's trachea was irradiated with daily fractions of 2 Gy to an accumulated dose of 20 Gy. The beat frequency of the cilia was recorded and specimens were taken for SEM-, TEM- and LM-investigations. Examination was made 1-10 days after each fractionation schedule. An increased ciliary beat frequency was recorded at 2 Gy and 4 Gy. With increasing dose, there was an inverted relationship to the frequency. Light-microscopy showed edema and an increased amount of goblet cells in relation to the increasing dose. With SEM an increased number of ciliary blebs could be seen. These could be classified according to size and number, and showed a positive correlation to the dose. TEM-investigations showed signs of increased intracellular activity at higher doses in the form of multilobulated nuclei and an increasing number of nuclear pores. At lower doses, an increased amount of mitochondria appeared in the apical part of the cell. It is at present difficult to evaluate any correlation between the physiological activity and the morphology. More biological data are needed to explain the early irradiation effects

  6. Estimation of divergence times in litostomatean ciliates (Ciliophora: Intramacronucleata), using Bayesian relaxed clock and 18S rRNA gene.

    Science.gov (United States)

    Vďačný, Peter

    2015-08-01

    The class Litostomatea comprises a diverse assemblage of free-living and endosymbiotic ciliates. To understand diversification dynamic of litostomateans, divergence times of their main groups were estimated with the Bayesian molecular dating, a technique allowing relaxation of molecular clock and incorporation of flexible calibration points. The class Litostomatea very likely emerged during the Cryogenian around 680 Mya. The origin of the subclass Rhynchostomatia is dated to about 415 Mya, while that of the subclass Haptoria to about 654 Mya. The order Pleurostomatida, emerging about 556 Mya, was recognized as the oldest group within the subclass Haptoria. The order Spathidiida appeared in the Paleozoic about 442 Mya. The three remaining haptorian orders evolved in the Paleozoic/Mesozoic periods: Didiniida about 419 Mya, Lacrymariida about 269 Mya, and Haptorida about 194 Mya. The subclass Trichostomatia originated from a spathidiid ancestor in the Mesozoic about 260 Mya. A further goal of this study was to investigate the impact of various settings on posterior divergence time estimates. The root placement and tree topology as well as the priors of the rate-drift model, birth-death process and nucleotide substitution rate, had no significant effect on calculation of posterior divergence time estimates. However, removal of calibration points could significantly change time estimates at some nodes. PMID:26204556

  7. Tissue mortality by Caribbean ciliate infection and white band disease in three reef-building coral species

    Science.gov (United States)

    Bastidas, Carolina; Croquer, Aldo

    2016-01-01

    Caribbean ciliate infection (CCI) and white band disease (WBD) are diseases that affect a multitude of coral hosts and are associated with rapid rates of tissue losses, thus contributing to declining coral cover in Caribbean reefs. In this study we compared tissue mortality rates associated to CCI in three species of corals with different growth forms: Orbicella faveolata (massive-boulder), O. annularis (massive-columnar) and Acropora cervicornis (branching). We also compared mortality rates in colonies of A. cervicornis bearing WBD and CCI. The study was conducted at two locations in Los Roques Archipelago National Park between April 2012 and March 2013. In A. cervicornis, the rate of tissue loss was similar between WBD (0.8 ± 1 mm/day, mean ± SD) and CCI (0.7 ± 0.9 mm/day). However, mortality rate by CCI in A. cervicornis was faster than in the massive species O. faveolata (0.5 ± 0.6 mm/day) and O. annularis (0.3 ± 0.3 mm/day). Tissue regeneration was at least fifteen times slower than the mortality rates for both diseases regardless of coral species. This is the first study providing coral tissue mortality and regeneration rates associated to CCI in colonies with massive morphologies, and it highlights the risks of further cover losses of the three most important reef-building species in the Caribbean. PMID:27547525

  8. The water-born protein pheromones of the polar protozoan ciliate, Euplotes nobilii: Coding genes and molecular structures

    Science.gov (United States)

    Vallesi, Adriana; Alimenti, Claudio; Di Giuseppe, Graziano; Dini, Fernando; Pedrini, Bill; Wüthrich, Kurt; Luporini, Pierangelo

    2010-08-01

    The protozoan ciliate Euplotes nobilii found in Antarctic and Arctic coastal waters relies on secretion of water-soluble cell type-specific signal proteins (pheromones) to regulate its vegetative growth and sexual mating. For three of these psychrophilic pheromones we previously determined the three-dimensional structures by nuclear magnetic resonance (NMR) spectroscopy with protein solutions purified from the natural sources, which led to evidence that their adaptation to cold is primarily achieved by increased flexibility through an extension of regions free of regular secondary structures, and by increased exposure of negative charges on the protein surface. Then we cloned the coding genes of these E. nobilii pheromones from the transcriptionally active cell somatic nucleus (macronucleus) and characterized the full-length sequences. These sequences all contain an open reading frame of 252-285 nucleotides, which is specific for a cytoplasmic pheromone precursor that requires two proteolytic cleavages to remove a signal peptide and a pro segment before release of the mature protein into the extracellular environment. The 5‧ and 3‧ non-coding regions are two- to three-fold longer than the coding region and appear to be tightly conserved, probably in relation to the inclusion of intron sequences destined to be alternatively removed to play key regulatory roles in the mechanism of the pheromone gene expression.

  9. Arrest in ciliated cell expansion on the bronchial lining of adult rats caused by chronic exposure to industrial noise

    International Nuclear Information System (INIS)

    Workers chronically exposed to high-intensity/low-frequency noise at textile plants show increased frequency of respiratory infections. This phenomenon prompted the herein investigation on the cytology of the bronchial epithelium of Wistar rats submitted to textile noise. Workplace noise from a cotton-mill room of a textile factory was recorded and reproduced in a sound-insulated animal room. The Wistar rats were submitted to a weekly schedule of noise treatment that was similar to that of the textile workers (8h/day, 5 days/week). Scanning electron microscopy (SEM) was used to compare the fine morphology of the inner surface of the bronchi in noise-exposed and control rats. SEM quantitative cytology revealed that exposure to noise for 5-7 months caused inhibition in the natural expansion of the area occupied by ciliated cells on the bronchial epithelium as adult rats grow older. This difference between noise-exposed and age-matched control rats was statistically significant (P0.05) and documents that the cytology of the rat bronchial epithelium is mildly altered by noise exposure. The decrease in the area of bronchial cilia may impair the mucociliar clearance of the respiratory airways and, thus, increase vulnerability to respiratory infection

  10. Molecular phylogeny and species delimitation within the ciliate genus Spirostomum (Ciliophora, Postciliodesmatophora, Heterotrichea), using the internal transcribed spacer region.

    Science.gov (United States)

    Shazib, Shahed Uddin Ahmed; Vďačný, Peter; Kim, Ji Hye; Jang, Seok Won; Shin, Mann Kyoon

    2016-09-01

    Morphological and molecular delimitation of Spirostomum species is currently under debate. We addressed species boundaries within the genus Spirostomum, using the ITS1-5.8S-ITS2 region and the secondary structure of the ITS2 molecule, and 18S and 28S (D1D2) sequences additionally. The Spirostomum ITS region is among the shortest within the ciliates hitherto studied. The Spirostomum ITS2 molecule matches the "ring model", but exhibits only two helices radiating from a common loop. According to comparative analyses, they very likely correspond to helices II and III of other eukaryotes. Our phylogenetic analyses of the ITS region revealed a complex genealogical structure within the genus Spirostomum. However, boundaries among Spirostomum species could not be unambiguously determined either by phylogenetic trees, networks or sequence divergence cutoffs, because ITS2 sequences transcended species boundaries of the following morphospecies: S. ambiguum, S. minus, S. subtilis and S. teres. According to molecular diversity analysis, this is very likely caused by polymorphism in S. minus and S. teres, and by the lack of variability in S. ambiguum and S. subtilis. No compensatory base changes (CBCs) were detected in helices of the ITS2 molecule between different Spirostomum species, documenting that CBC analysis per se is not able to effectively discriminate Spirostomum species. PMID:27261253

  11. Notes on Two Marine Ciliates from the Yellow Sea, China: Placus salinus and Strombidium apolatum (Protozoa, Ciliophora)

    Institute of Scientific and Technical Information of China (English)

    XU Dapeng; SONG Weibo; HU Xiaozhong

    2005-01-01

    The living morphology and infraciliature of two rare marine ciliates, Placus salinus Dietz, 1964 and Strombidium apolatum Wilbert and Song, 2005, collected from the coastal waters near Qingdao, China, were investigated by in vivo observation and protargol impregnation technique. The improved diagnosis for Placus salinus is as follows: medium-sized marine Placus, in vivo (50 -60) μm × (30 -40)μm; cell elliptical to barrel-shaped; 28 -31 somatic kineties; single macronucleus usually ellipsoid and one micronucleus located in the indention of the macronucleus; one contractile vacuole posteriorly positioned. Strombidium apolatum is characterized by: marine strombidium (40-60) μm × (30-45) μm in vivo, cordiform in shape with somewhat pointed posterior end and conspicuous apical protrusion; extrusomes prominent, about 15μm in length and evenly arranged along the circle kinety; about 16 collar and 5-6 buccal membranelles; one elongate macronucleus and one micronucleus; circle and ventral kineties consisting of about 53 and 45 dikinetids respectively.

  12. Two New Genera of Planktonic Ciliates and Insights into the Evolution of the Family Strombidiidae (Protista, Ciliophora, Oligotrichia.

    Directory of Open Access Journals (Sweden)

    Weiwei Liu

    Full Text Available Oligotrich ciliates are common marine microplankters, but their biodiversity and evolutionary relationships have not been well-documented. Morphological descriptions and small subunit rRNA gene sequences of two new species representing two new strombidiid genera, Sinistrostrombidium cupiformum gen. nov., sp. nov. and Antestrombidium agathae gen. nov., sp. nov. are presented, and their taxonomy and molecular phylogeny are analyzed. Sinistrostrombidium gen. nov. is characterized by a sinistrally spiraled girdle kinety and a longitudinal ventral kinety. Antestrombidium gen. nov. is distinguished by tripartite somatic kineties (circular and ventral kineties plus dextrally spiraled girdle kinety. Sinistrostrombidium and Antestrombidium branched separately from one another in phylogenetic trees, clustering with different clades of strombidiids. The new genera added to the diversities of ciliary patterns and small subunit rRNA gene sequences in strombidiids leads to presentation of a new hypothesis about evolution of the 12 known strombidiid genera, based on ciliary pattern and partly supported by molecular evidence. In addition, our new morphological and molecular analyses support establishment of a new order Lynnellida ord. nov., characterized by an open adoral zone of membranelles without differentiation of anterior and ventral membranelles, for Lynnella, but we remain unable to assign the genus to a subclass with confidence.

  13. Multigene-based analyses on evolutionary phylogeny of two controversial ciliate orders: Pleuronematida and Loxocephalida (Protista, Ciliophora, Oligohymenophorea).

    Science.gov (United States)

    Gao, Feng; Katz, Laura A; Song, Weibo

    2013-07-01

    Relationships among members of the ciliate subclass Scuticociliatia (Ciliophora, Oligohymenophorea) are largely unresolved. Phylogenetic studies of its orders Pleuronematida and Loxocephalida were initially based on small subunit ribosomal RNA gene (SSU-rDNA) analyses of a limited number of taxa. Here we characterized 37 sequences (SSU-rDNA, ITS-5.8S and LSU-rDNA) from 21 taxonomically controversial members of these orders. Phylogenetic trees constructed to assess the inter- and intra-generic relationships of pleuronematids and loxocephalids reveal the following: (1) the order Loxocephalida and its two families Loxocephalidae and Cinetochilidae are not monophyletic when more taxa are added; (2) the core pleuronematids are divided into two fully supported clades, however, the order Pleuronematida is not monophyletic because Cyclidium glaucoma is closer to Thigmotrichida; (3) the family Pleuronematidae and the genus Schizocalyptra are monophyletic, though rDNA sequences of Pleuronema species are highly variable; (4) Pseudoplatynematum and Sathrophilus are closely related to the subclass Astomatia, while Cinetochilum forms a monophyletic group with the subclass Apostomatia; and (5) Hippocomos falls in the order Pleuronematida and is closely related to Eurystomatellidae and Cyclidium plouneouri. Further, in an effort to provide a better resolution of evolutionary relationships, the secondary structures of ITS2 transcripts and the variable region 4 (V4) of the small subunit ribosomal RNA (SSU-rRNA) are predicted, revealing that ITS2 structures are conserved at the order level while V4 region structures are more variable than ITS2 structures. PMID:23541839

  14. Two New Genera of Planktonic Ciliates and Insights into the Evolution of the Family Strombidiidae (Protista, Ciliophora, Oligotrichia).

    Science.gov (United States)

    Liu, Weiwei; Yi, Zhenzhen; Xu, Dapeng; Clamp, John C; Li, Jiqiu; Lin, Xiaofeng; Song, Weibo

    2015-01-01

    Oligotrich ciliates are common marine microplankters, but their biodiversity and evolutionary relationships have not been well-documented. Morphological descriptions and small subunit rRNA gene sequences of two new species representing two new strombidiid genera, Sinistrostrombidium cupiformum gen. nov., sp. nov. and Antestrombidium agathae gen. nov., sp. nov. are presented, and their taxonomy and molecular phylogeny are analyzed. Sinistrostrombidium gen. nov. is characterized by a sinistrally spiraled girdle kinety and a longitudinal ventral kinety. Antestrombidium gen. nov. is distinguished by tripartite somatic kineties (circular and ventral kineties plus dextrally spiraled girdle kinety). Sinistrostrombidium and Antestrombidium branched separately from one another in phylogenetic trees, clustering with different clades of strombidiids. The new genera added to the diversities of ciliary patterns and small subunit rRNA gene sequences in strombidiids leads to presentation of a new hypothesis about evolution of the 12 known strombidiid genera, based on ciliary pattern and partly supported by molecular evidence. In addition, our new morphological and molecular analyses support establishment of a new order Lynnellida ord. nov., characterized by an open adoral zone of membranelles without differentiation of anterior and ventral membranelles, for Lynnella, but we remain unable to assign the genus to a subclass with confidence. PMID:26121340

  15. Phylogenetic relationships of the ciliate class Heterotrichea (Protista, Ciliophora, Postciliodesmatophora) inferred from multiple molecular markers and multifaceted analysis strategy.

    Science.gov (United States)

    Shazib, Shahed Uddin Ahmed; Vd'ačný, Peter; Kim, Ji Hye; Jang, Seok Won; Shin, Mann Kyoon

    2014-09-01

    The ciliate class Heterotrichea is defined by somatic dikinetids bearing postciliodesmata, by an oral apparatus consisting of a paroral membrane and an adoral zone of membranelles, as well as by features of nuclear division involving extramacronuclear microtubules. Although phylogenetic interrelationships among heterotrichs have been analyzed several times, deeper nodes of the heterotrichean tree of life remain poorly resolved. To cast more light on the evolutionary history of heterotricheans, we performed phylogenetic analyses of multiple loci (18S rRNA gene, ITS1-5.8S rRNA-ITS2 region, and 28S rRNA gene) using traditional tree-building phylogenetic methods and statistical tree topology tests as well as phylogenetic networks, split spectrum analysis and quartet likelihood mapping. This multifaceted approach has shown that (1) Peritromus is very likely an adelphotaxon of all other heterotrichs; (2) Spirostomum and Anigsteinia are sister taxa and their common monophyletic origin is strongly supported by a uniquely posteriorly-thickened paroral membrane; (3) the monotypic family Chattonidiidae should be suppressed because its type genus clusters within the family Condylostomatidae; and (4) new families are needed for Gruberia and Fabrea because their affiliation with Spirostomidae and Climacostomidae, respectively, is not supported by molecular phylogenies nor the fine structure of the paroral membrane. PMID:24859684

  16. Social information from immigrants: multiple immigrant-based sources of information for dispersal decisions in a ciliate.

    Science.gov (United States)

    Jacob, Staffan; Chaine, Alexis S; Schtickzelle, Nicolas; Huet, Michèle; Clobert, Jean

    2015-09-01

    1. Dispersal is increasingly recognized as being an informed process, based on information organisms obtain about the landscape. While local conditions are often found to drive dispersal decisions, local context is not always a reliable predictor of conditions in neighbouring patches, making the use of local information potentially useless or even maladaptive. In this case, using social information gathered by immigrants might allow adjusting dispersal decisions without paying the costs of prospecting. However, this hypothesis has been largely neglected despite its major importance for ecological and evolutionary processes. 2. We investigated three fundamental questions about immigrant-informed dispersal: Do immigrants convey information that influences dispersal, do organisms use multiple cues from immigrants, and is immigrant-informed dispersal genotype dependent? 33. Using Tetrahymena thermophila ciliates in microcosms, we manipulated the number of immigrants arriving, the density of congeners, the resource quality in neighbouring patches, matrix characteristics and the level of cooperation of individuals in the neighbouring populations. 4. We provide the first experimental evidence that immigrants convey a number of different cues about neighbouring patches and matrix (patch quality, matrix characteristics and cooperation in neighbouring populations) in this relatively simple organism. Furthermore, we demonstrate genotype-dependent immigrant-informed dispersal decisions about patch quality and matrix characteristics. 5. Multiple cues from immigrants and genotype-dependent use of cues have major implications for theoretical metapopulation dynamics and the potential for local adaptation. PMID:25902764

  17. Pequenas Parmelia S.L. (Líquens: Ascomycotina ciliadas dos cerrados brasileiros Little ciliate Parmeliae in the brazilian cerradoes

    Directory of Open Access Journals (Sweden)

    Marcelo Pinto Marcelli

    1993-12-01

    Full Text Available Este trabalho foi baseado em coletas realizadas em todos os tipos estruturais de cerrado, incluindo formações de altitude e rochosas. São apresentadas descrições detalhadas, chave de identificação e ilustrações das espécies de Bulboíhrix (16, Relicina (2, Myelochroa (2, Parmelinella (1, Parmelinopsis (6 e Hypotrachyna (3 encontradas. B. linteolocarpa M.P. Marcelli e B. subklementii M.P. Marcelli são descritas como novas. E feita a combinação nova Parmelinella versiformis (Kremp. M.P. Marcelli. B. sensibilis (Steiner & Zahlbr. Hale é nova para o Brasil. B. meizospora (Nyl. Hale e Parmelinopsis jamesii (Hale Elix & Hale são novas para o Continente Americano. Há um grande número de primeiras citações para vários estados e várias segundas referências para o Brasil.This work deals with species of the lichen genera Bulboihrix (16, Relicina (2, Myelochroa (2, Parmelinella (1, Parmelinopsis (6 and Hypotrachyna (3 (ciliate species growing in the brazilian "cerrado" vegetation. All types of cerradoes were investigated, since almost open fields to forestal formations and including altitude rock fields, gallery forests and others placed inside cerrado areas. Altogether 30 species were found and are described in detail. B. linteolocarpa M.P. Marcelli and B. subklementii M.P. Marcelli are new species. The new combination Parmelinella versiformis (Kremp. M.P. Marcelli is done. B. sensibilis (Steiner & Zahlbr. Hale is new for Brazil. B. meizospora (Nyl. Hale and Parmelinopsis jamesii (Hale Elix & Hale are new for the American Continent.

  18. Ciliated protists from the nepheloid layer and water column of sites affected by the Deepwater Horizon oil spill in the Northeastern Gulf of Mexico

    Science.gov (United States)

    Moss, Joseph A.; McCurry, Chelsea; Tominack, Sarah; Romero, Isabel C.; Hollander, David; Jeffrey, Wade H.; Snyder, Richard A.

    2015-12-01

    Benthic marine protists have been well documented from shallow marine benthic habitats but remain understudied in deeper habitats on continental shelves and slopes, particularly in the Northeastern Gulf of Mexico (NEGOM). This region was affected by a deep water oil well failure (BP-Deepwater Horizon, 2010). The combination of a lack of information on deep sea microbenthic communities and the potential for benthic microbial petroleum mineralization prompted this investigation. Water column and nepheloid layer samples were obtained via Niskin bottles and a multicorer respectively at stations across the NEGOM to: (1) determine whether nepheloid and water column communities are distinct and (2) assess benthic species richness relative to sediment PAH contamination. Phylum specific 18S rRNA gene amplification was used to construct clone libraries of ciliate assemblages. BLAST searches in the NCBI database indicated that a majority (~75%) of the clone sequences corresponded (94-100% similarity) with listed, yet unclassified sequences. Several putative species were common at most site locations and depths. Many known benthic ciliates, such as Uronychia transfuga, Uronychia setigera, and Spirotrachelostyla tani, were common in the nepheloid layer samples and not recovered in water column samples. Ciliated protist species richness increased with PAH levels found in surface sediments, suggesting a positive microbial response to petroleum enrichment of the benthos. The presence of previously unknown microbenthic communites in the nephaloid layer over oceanic clay-silt muds alters our view of microbial processes in the deep sea and merits investigation of the microbial processes and rates of microbial mineralization and biomass production important to global biogeochemistry.

  19. Mating of the stichotrichous ciliate Oxytricha trifallax induces production of a class of 27 nt small RNAs derived from the parental macronucleus.

    Directory of Open Access Journals (Sweden)

    Alan M Zahler

    Full Text Available Ciliated protozoans possess two types of nuclei; a transcriptionally silent micronucleus, which serves as the germ line nucleus, and a transcriptionally active macronucleus, which serves as the somatic nucleus. The macronucleus is derived from a new diploid micronucleus after mating, with epigenetic information contributed by the parental macronucleus serving to guide the formation of the new macronucleus. In the stichotrichous ciliate Oxytricha trifallax, the macronuclear DNA is highly processed to yield gene-sized nanochromosomes with telomeres at each end. Here we report that soon after mating of Oxytricha trifallax, abundant 27 nt small RNAs are produced that are not present prior to mating. We performed next generation sequencing of Oxytricha small RNAs from vegetative and mating cells. Using sequence comparisons between macronuclear and micronuclear versions of genes, we found that the 27 nt RNA class derives from the parental macronucleus, not the developing macronucleus. These small RNAs are produced equally from both strands of macronuclear nanochromosomes, but in a highly non-uniform distribution along the length of the nanochromosome, and with a particular depletion in the 30 nt telomere-proximal positions. This production of small RNAs from the parental macronucleus during macronuclear development stands in contrast to the mechanism of epigenetic control in the distantly related ciliate Tetrahymena. In that species, 28-29 nt scanRNAs are produced from the micronucleus and these micronuclear-derived RNAs serve as epigenetic controllers of macronuclear development. Unlike the Tetrahymena scanRNAs, the Oxytricha macronuclear-derived 27 mers are not modified by 2'O-methylation at their 3' ends. We propose models for the role of these "27macRNAs" in macronuclear development.

  20. Identification of cAMP-dependent phosphorylated proteins involved in the formation of environment-resistant resting cysts by the terrestrial ciliate Colpoda cucullus

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    Y Sogame

    2014-07-01

    Full Text Available In the terrestrial ciliate Colpoda cucullus, an elevation of the intracellular cAMP concentration was reported to be involved in environment-resistant resting cyst formation. In the present study, cAMP-dependently phosphorylated proteins of encystment-induced C. cucullus were isolated with Phos-tag agarose phosphate-affinity beads and subsequent SDS-PAGE. In a liquid chromatography/tandem mass spectrometry analysis of these phosphoproteins, 27-, 37- and 43-kDa proteins (p27, p37 and p43 were identified as Rieske iron-sulfur protein, histone H4 (hyperacetylated form, and actin, respectively.

  1. Phylogenetic positions of two marine ciliates, Metanophrys similis and Pseudocohnilembus hargisi (Protozoa, Ciliophora, Scuticociliatia), inferred from complete small subunit rRNA gene sequences

    Institute of Scientific and Technical Information of China (English)

    2006-01-01

    The small subunit rRNA (SSrRNA) gene was sequenced for two marine scuticociliates Metanophrys similis and Pseudocohnilembus hargisi. The results show that this gene comprises 1763 and 1753 nucleotides in the two marine ciliates respectively.Metanophrys similis is phylogenetically closely related to the clade containing Mesanophrys carcini and Anophyroides haemophila, which branches basally to other species within the order Philasterida. Pseudocohnilembus hargisi groups with its congener, P. marinus, with strong bootstrap support. Paranophrys magna groups with the clade including Cohnilembus and Uronema, representing a sister clade to that containing the two Pseudocohnilembus species.

  2. Ultrastructure observation on the cells at different life history stages of Cryptocaryon irritans (Ciliophora: Prostomatea), a parasitic ciliate of marine fishes.

    Science.gov (United States)

    Ma, Rui; Ni, Bing; Fan, Xinpeng; Warren, Alan; Yin, Fei; Gu, Fukang

    2016-09-01

    Cells of Cryptocaryon irritans at different life history stages were studied using both light and electron microscopy. The characteristics of several organelles were revealed for the first time at the ultrastructural level. It was confirmed that the cytostome of trophonts, protomonts and theronts was surrounded by cilium-palp triplets rather than ciliary triplets. The nematodesmata underlying the circumoral dikinetids were single bundles, whereas these were always paired in Prorodontids. Toxicysts were present in late-stage tomonts and theronts, but were absent in trophonts and protomonts. We posited that toxicysts might play a role in infection and invasion of host-fish tissue by theronts. The adoral brosse was unlike that of any other family of the class Prostomatea based on its location and morphology. Membranous folds were present in trophonts, protomonts and theronts. These folds were longer and more highly developed in C. irritans than in exclusively free-living prostome ciliates suggesting that they might be linked to parasitism in C. irritans. Trophonts, protomonts and theronts had multiple contractile vacuoles. The basic ultrastructure of the contractile vacuole of C. irritans was similar to that of other kinetofragminophoran ciliates. They might play different roles in different stages of the life cycle since their ultrastructure varied among trophonts, protomonts and theronts. PMID:27460894

  3. A case study for effects of operational taxonomic units from intracellular endoparasites and ciliates on the eukaryotic phylogeny: phylogenetic position of the haptophyta in analyses of multiple slowly evolving genes.

    Directory of Open Access Journals (Sweden)

    Hisayoshi Nozaki

    Full Text Available Recent multigene phylogenetic analyses have contributed much to our understanding of eukaryotic phylogeny. However, the phylogenetic positions of various lineages within the eukaryotes have remained unresolved or in conflict between different phylogenetic studies. These phylogenetic ambiguities might have resulted from mixtures or integration from various factors including limited taxon sampling, missing data in the alignment, saturations of rapidly evolving genes, mixed analyses of short- and long-branched operational taxonomic units (OTUs, intracellular endoparasite and ciliate OTUs with unusual substitution etc. In order to evaluate the effects from intracellular endoparasite and ciliate OTUs co-analyzed on the eukaryotic phylogeny and simplify the results, we here used two different sets of data matrices of multiple slowly evolving genes with small amounts of missing data and examined the phylogenetic position of the secondary photosynthetic chromalveolates Haptophyta, one of the most abundant groups of oceanic phytoplankton and significant primary producers. In both sets, a robust sister relationship between Haptophyta and SAR (stramenopiles, alveolates, rhizarians, or SA [stramenopiles and alveolates] was resolved when intracellular endoparasite/ciliate OTUs were excluded, but not in their presence. Based on comparisons of character optimizations on a fixed tree (with a clade composed of haptophytes and SAR or SA, disruption of the monophyly between haptophytes and SAR (or SA in the presence of intracellular endoparasite/ciliate OTUs can be considered to be a result of multiple evolutionary reversals of character positions that supported the synapomorphy of the haptophyte and SAR (or SA clade in the absence of intracellular endoparasite/ciliate OTUs.

  4. Redescriptions of three trachelocercid ciliates (Protista, Ciliophora, Karyorelictea), with notes on their phylogeny based on small subunit rRNA gene sequences.

    Science.gov (United States)

    Yan, Ying; Xu, Yuan; Yi, Zhenzhen; Warren, Alan

    2013-09-01

    Three trachelocercid ciliates, Kovalevaia sulcata (Kovaleva, 1966) Foissner, 1997, Trachelocerca sagitta (Müller, 1786) Ehrenberg, 1840 and Trachelocerca ditis (Wright, 1982) Foissner, 1996, isolated from two coastal habitats at Qingdao, China, were investigated using live observation and silver impregnation methods. Data on their infraciliature and morphology are supplied. The small subunit rRNA (SSU rRNA) genes of K. sulcata and Trachelocerca sagitta were sequenced for the first time. Phylogenetic analyses based on SSU rRNA gene sequence data indicate that both organisms, and the previously sequenced Trachelocerca ditis, are located within the trachelocercid assemblage and that K. sulcata is sister to an unidentified taxon forming a clade that is basal to the core trachelocercids. PMID:23847285

  5. Comparative genomics of the pathogenic ciliate Ichthyophthirius multifiliis, its free-living relatives and a host species provide insights into adoption of a parasitic lifestyle and prospects for disease control

    OpenAIRE

    Coyne, Robert S; Hannick, Linda; Shanmugam, Dhanasekaran; Jessica B Hostetler; Brami, Daniel; Joardar, Vinita S; Johnson, Justin; Radune, Diana; Singh, Irtisha; Jonathan H Badger; Kumar, Ujjwal; Saier, Milton; Wang, Yufeng; Cai, Hong; Gu, Jianying

    2011-01-01

    BACKGROUND: Ichthyophthirius multifiliis, commonly known as Ich, is a highly pathogenic ciliate responsible for 'white spot', a disease causing significant economic losses to the global aquaculture industry. Options for disease control are extremely limited, and Ich's obligate parasitic lifestyle makes experimental studies challenging. Unlike most well-studied protozoan parasites, Ich belongs to a phylum composed primarily of free-living members. Indeed, it is closely related to the model org...

  6. Comparative genomics of the pathogenic ciliate Ichthyophthirius multifiliis, its free-living relatives and a host species provide insights into adoption of a parasitic lifestyle and prospects for disease control

    OpenAIRE

    Coyne, Robert S; Hannick, Linda; Shanmugam, Dhanasekaran; Jessica B Hostetler; Brami, Daniel; Joardar, Vinita S; Johnson, Justin; Radune, Diana; Singh, Irtisha; Jonathan H Badger; Kumar, Ujjwal; Saier, Milton; Wang, Yufeng; Cai, Hong; Gu, Jianying

    2011-01-01

    Background Ichthyophthirius multifiliis, commonly known as Ich, is a highly pathogenic ciliate responsible for 'white spot', a disease causing significant economic losses to the global aquaculture industry. Options for disease control are extremely limited, and Ich's obligate parasitic lifestyle makes experimental studies challenging. Unlike most well-studied protozoan parasites, Ich belongs to a phylum composed primarily of free-living members. Indeed, it is closely related to the model orga...

  7. Comparative genomics of the pathogenic ciliate Ichthyophthirius multifiliis, its free-living relatives and a host species provide insights into adoption of a parasitic lifestyle and prospects for disease control

    OpenAIRE

    Coyne, Robert S; Hannick, Linda; Shanmugam, Dhanasekaran; Jessica B Hostetler; Brami, Daniel; Joardar, Vinita S; Johnson, Justin; Radune, Diana; Singh, Irtisha; Jonathan H Badger; Kumar, Ujjwal; Saier, Milton; Wang, Yufeng; Cai, Hong; Gu, Jianying

    2011-01-01

    Abstract Background Ichthyophthirius multifiliis, commonly known as Ich, is a highly pathogenic ciliate responsible for 'white spot', a disease causing significant economic losses to the global aquaculture industry. Options for disease control are extremely limited, and Ich's obligate parasitic lifestyle makes experimental studies challenging. Unlike most well-studied protozoan parasites, Ich belongs to a phylum composed primarily of free-living members. Indeed, it is closely relat...

  8. Life Cycle, Morphology, Ontogenesis, and Phylogeny of Bromeliothrix metopoides nov. gen., nov. spec., a Peculiar Ciliate (Protista, Colpodea) from Tank Bromeliads (Bromeliaceae).

    Science.gov (United States)

    Foissner, Wilhelm

    2010-11-15

    Bromeliothrix metopoides was discovered in tank bromeliads from Central and South America. Pure cultures could be established in various media stimulating growth of its food, i.e. bacteria and heterotrophic flagellates of the genus Polytomella. The new ciliate was investigated in the light- and scanning electron microscope, with various silver impregnation techniques, and with molecular methods, using the small-subunit rDNA. The morphology and its changes during the life cycle are documented by 167 figures and a detailed morphometry. Bromeliothrix metopoides is about 27-55 × 22-36 μm in size and has a complex life cycle with Metopus-shaped, bacteriophagous theronts and trophonts (microstomes) and obovate, flagellate-feeding macrostomes having a large, triangular oral apparatus. The thin-walled resting cysts of the theronts and trophonts are uniquely ellipsoidal, while the thick-walled cyst of the macrostome morph is globular. Reproduction occurs in freely motile condition either by binary fission or polytomy, producing a unique, motile "division chain" composed of four globular offspring, of which the central ones are connected by a curious, plug-like holdfast. Division is associated with a complete reorganization of the parental oral and somatic infraciliature. Stomatogenesis is merotelokinetal as in other members of the order Colpodida. The right polykinetid is generated by the rightmost postoral kinety, while the left polykinetid is produced by the two left postoral kineties and five left side kineties. The division in freely motile condition resembles the Exocolpodidae Foissner et al., 2002, to which Bromeliothrix is tentatively assigned, differing from Exocolpoda mainly by the formation of a macrostome morph and a division chain. Bromeliothrix has a ciliary and silverline pattern typical for members of the family Colpodidae. This matches the molecular classification which, however, hardly reflects the outstanding division and life cycle, suggesting some

  9. Zygotic Expression of the Double-Stranded RNA Binding Motif Protein Drb2p Is Required for DNA Elimination in the Ciliate Tetrahymena thermophila ▿

    Science.gov (United States)

    Motl, Jason A.; Chalker, Douglas L.

    2011-01-01

    Double-stranded RNA binding motif (DSRM)-containing proteins play many roles in the regulation of gene transcription and translation, including some with tandem DSRMs that act in small RNA biogenesis. We report the characterization of the genes for double-stranded RNA binding proteins 1 and 2 (DRB1 and DRB2), two genes encoding nuclear proteins with tandem DSRMs in the ciliate Tetrahymena thermophila. Both proteins are expressed throughout growth and development but exhibit distinct peaks of expression, suggesting different biological roles. In support of this, we show that expression of DRB2 is essential for vegetative growth while DRB1 expression is not. During conjugation, Drb1p and Drb2p localize to distinct nuclear foci. Cells lacking all DRB1 copies are able to produce viable progeny, although at a reduced rate relative to wild-type cells. In contrast, cells lacking germ line DRB2 copies, which thus cannot express Drb2p zygotically, fail to produce progeny, arresting late into conjugation. This arrest phenotype is accompanied by a failure to organize the essential DNA rearrangement protein Pdd1p into DNA elimination bodies and execute DNA elimination and chromosome breakage. These results implicate zygotically expressed Drb2p in the maturation of these nuclear structures, which are necessary for reorganization of the somatic genome. PMID:22021239

  10. 纤毛类原生动物中宿主-共生体系统的研究%Studies on the Host-Symbiont System in Ciliates

    Institute of Scientific and Technical Information of China (English)

    顾福康; 孙军; 何远; 田沁

    2001-01-01

    目前已经在100多种纤毛虫中观察到细菌、藻类和其他微生物等共生体。对纤毛虫中宿主-共生体系统的研究表明,双小核草履虫中卡巴粒的遗传为细胞质遗传理论提供了例证;含细菌共生体的许多厌氧纤毛虫无线粒体,共生体对宿主代谢有重要作用;尾草履虫-钝状全孢螺菌共生作用中,共生菌感染形式的39kDa、15kDa周质蛋白可分别与IF-3-1、IF-3-2两种单抗反应,其共生体早期感染过程中两种抗原的量发生显著变化,并且共生体生殖 形式选择性地合成63kDa蛋白质,该蛋白质可能是与共生作用有联系的关键分子;绿草履虫-小球藻共生系统中,共生藻中存在葡糖胺硬性壁是其与草履虫发生共生关系的基本条件,其中,共生藻参与宿主代谢,与宿主形成相互受益的专一性关系,并且藻类共生体的作用可能影响了宿主草履虫基因组有关结构,改变了其基因表达。作者推测,探索共生体对宿主基因结构及其表达产物的影响可能是对纤毛虫中共生作用研究的主要趋势,这对于深入了 解真核细胞中宿主-共生体双方的相互作用、物质交流在分子水平上的调控机理、细胞结构与功能的关系等细胞生命活动规律是有意义的。%To date, bacterial,algal and other microbial symbionts have been found in more than 100 species of ciliates. The study of the host-symbiont system in ciliates shows that: ( 1 ) The inheritance of kappa particles in the cytoplasm of Paramecium aurelia is a classic example of the cytoplasmic inheritance theory. (2) Bacterial symbionts in some anerobic ciliates that lack mitochondria play the major role in the host's metabolism. (3) In the P. Caudatum-Holospora obtusa system, 39- and 15-kDa periplasmic pro teins of the infectious H. Obtusa reacted with IF-3-1 and IF-3-2 monoclonal antibodies respectively. The amounts of both antigens were reduced during

  11. Molecular phylogeny and species separation of five morphologically similar Holosticha-complex ciliates (Protozoa, Ciliophora) using ARDRA riboprinting and multigene sequence data

    Science.gov (United States)

    Gao, Feng; Yi, Zhenzhen; Gong, Jun; Al-Rasheid Khaled, A. S.; Song, Weibo

    2010-05-01

    To separate and redefine the ambiguous Holosticha-complex, a confusing group of hypotrichous ciliates, six strains belonging to five morphospecies of three genera, Holosticha heterofoissneri, Anteholosticha sp. pop1, Anteholosticha sp. pop2, A. manca, A. gracilis and Nothoholosticha fasciola, were analyzed using 12 restriction enzymes on the basis of amplified ribosomal DNA restriction analysis. Nine of the 12 enzymes could digest the DNA products, four ( Hinf I, Hind III, Msp I, Taq I) yielded species-specific restriction patterns, and Hind III and Taq I produced different patterns for two Anteholosticha sp. populations. Distinctly different restriction digestion haplotypes and similarity indices can be used to separate the species. The secondary structures of the five species were predicted based on the ITS2 transcripts and there were several minor differences among species, while two Anteholosticha sp. populations were identical. In addition, phylogenies based on the SSrRNA gene sequences were reconstructed using multiple algorithms, which grouped them generally into four clades, and exhibited that the genus Anteholosticha should be a convergent assemblage. The fact that Holosticha species clustered with the oligotrichs and choreotrichs, though with very low support values, indicated that the topology may be very divergent and unreliable when the number of sequence data used in the analyses is too low.

  12. Morphology and SSU rDNA sequence analysis of two hypotrichous ciliates (Protozoa, Ciliophora, Hypotrichia) including the new species Metaurostylopsis parastruederkypkeae n. sp.

    Science.gov (United States)

    Lu, Borong; Wang, Chundi; Huang, Jie; Shi, Yuhong; Chen, Xiangrui

    2016-05-01

    The morphology and phylogeny of two hypotrichous ciliates, Metaurostylopsis parastruederkypkeae n. sp. and Neourostylopsis flavicana (Wang et al., 2011) Chen et al., 2013 were investigated based on morphology, infraciliature and the small subunit (SSU) ribosomal RNA gene (rRNA) sequence. The new species, M. parastruederkypkeae n. sp. was identified according to its characteristics: body shape ellipsoidal, size about (165-200) × (45-60) μm in vivo, cell color reddish; two types of cortical granules including wheat grain-like and yellow-greenish larger ones along the marginal cirri rows and dorsal kineties and dot-like and reddish smaller ones, grouped around marginal cirri on ventral side and arranged in short lines on dorsal side; 26-41 adoral membranelles; three frontal and one parabuccal, five to seven frontoterminal, one buccal, and three to six transverse cirri; seven to thirteen midventral pairs; five to nine unpaired ventral cirri, five to seven left and three to five right marginal rows; and three complete dorsal kineties. Phylogenetic analysis based on SSU rDNA sequences showed that both Metaurostylopsis and Neourostylopsis are monophyletic. As the internal relationship between and within both genera are not clear, further studies on the species in these two genera are necessary. The key characteristics of all known twelve Metaurostylopsis-Apourostylopsis-Neourostylopsis species complex were updated.

  13. Morphology and phylogeny of three karyorelictean ciliates (Protista, Ciliophora), including two novel species, Trachelocerca chinensis sp. n. and Tracheloraphis dragescoi sp. n.

    Science.gov (United States)

    Xu, Yuan; Yan, Ying; Li, Lifang; Al-Rasheid, Khaled A S; Al-Farraj, Saleh A; Song, Weibo

    2014-12-01

    This paper investigates the morphology and infraciliature of three karyorelictean ciliates, Trachelocerca chinensis sp. n., Tracheloraphis dragescoi sp. n. and a rarely known form, Geleia acuta (Dragesco, 1960) Foissner, 1998, which were isolated from the intertidal zone of sandy beaches at Zhanjiang and Qingdao, China. Trachelocerca chinensis sp. n. is distinguished from related forms by having 26-30 somatic kineties, a narrow glabrous stripe and a single nuclear group composed of approximately four to six macronuclei and two micronuclei. Tracheloraphis dragescoi sp. n. can be recognized through its 14-22 somatic kineties, wide glabrous stripe and a single nuclear group composed of about four macronuclei. Phylogenetic analyses based on small-subunit (SSU) rRNA gene sequences indicated that the genera Trachelocerca and Tracheloraphis are closely related but that neither of them appears to be a clearly monophyletic group. Nonetheless, the monophyly of Trachelocerca is not rejected by the approximately unbiased (AU) test (P = 0.143, >0.05), although that of Tracheloraphis is rejected (P = 0.011, <0.05). Geleia acuta, meanwhile, branched with Geleia fossata and falls in the Geleia clade. PMID:25238761

  14. Phylogenetic positions of four hypotrichous ciliates (Protista, Ciliophora) based on SSU rRNA gene, with notes on their morphological characters.

    Science.gov (United States)

    Yang, Caiting; Liu, An; Xu, Yusen; Xu, Yuan; Fan, Xinpeng; Al-Farraj, Saleh A; Ni, Bing; Gu, Fukang

    2015-01-01

     The morphology and infraciliature of the four hypotrichous ciliates; Rigidohymena inquieta (Stokes, 1887) Berger, 2011, Pattersoniella vitiphila Foissner, 1987, Notohymena australis Foissner & O' Donoghue, 1990, and Cyrtohymena (Cyrtohymenides) australis (Foissner, 1995) Foissner, 2004, collected from east China, were investigated by using live observation and protargol impregnation method. An improved diagnosis for R. inquieta was supplied based on descriptions of present and previous populations. New morphology and morphogenesis information based on Chinese populations of another three hypotrichids were also supplemented. The Small-subunit rRNA (SSU rRNA) gene sequences of the four species were characterized and their phylogenetic positions were revealed by means of Bayesian inference and Maximum-likelihood analysis. The analyses shows that R. inquieta clusters with other members of the subfamily Stylonychinae, which confirms the monophyly of the subfamily and verified R. inquieta as a separated species from R. candens though it differs from others mainly by body size. C. (C.) australis occupying the basal position of the clade which contains cyrtohymenids and some other groups, declines the idea of separating Cyrtohymena into two subgenus. Notohymena australis and China population of Pattersoniella vitiphila respectively clustering with their congeners correspond well with the systematics revealed by morphological similarities. PMID:26623736

  15. The protein pheromone Er-1 of the ciliate Euplotes raikovi stimulates human T-cell activity: Involvement of interleukin-2 system

    International Nuclear Information System (INIS)

    Water-soluble protein signals (pheromones) of the ciliate Euplotes have been supposed to be functional precursors of growth factors and cytokines that regulate cell–cell interaction in multi-cellular eukaryotes. This work provides evidence that native preparations of the Euplotes raikovi pheromone Er-1 (a helical protein of 40 amino acids) specifically increases viability, DNA synthesis, proliferation, and the production of interferon-γ, tumor necrosis factor-α, interleukin (IL)-1β, IL-2, and IL-13 in human Jurkat T-cells. Also, Er-1 significantly decreases the mRNA levels of the β and γ subunits of IL-2 receptor (IL-2R), while the mRNA levels of the α subunit appeared to be not affected. Jurkat T-cell treatments with Er-1 induced the down-regulation of the IL-2Rα subunit by a reversible and time-dependent endocytosis, and increased the levels of phosphorylation of the extracellular signal-regulated kinases (ERK). The cell-type specificity of these effects was supported by the finding that Er-1, although unable to directly influence the growth of human glioma U-373 cells, induced Jurkat cells to synthesize and release factors that, in turn, inhibited the U-373 cell proliferation. Overall, these findings imply that Er-1 coupling to IL-2R and ERK immuno-enhances T-cell activity, and that this effect likely translates to an inhibition of glioma cell growth. -- Highlights: ► Euplotes pheromone Er-1 increases the growth of human Jurkat T-cells. ► Er-1 increases the T-cell production of specific cytokines. ► Er-1 activates interleukin-2 receptor and extracellular signal-regulated kinases. ► The immuno-enhancing effect of Er-1 on Jurkat cells translates to an inhibition of human glioma cell growth.

  16. Genome-wide identification and evolution of ATP-binding cassette transporters in the ciliate Tetrahymena thermophila: A case of functional divergence in a multigene family

    Directory of Open Access Journals (Sweden)

    Yuan Dongxia

    2010-10-01

    Full Text Available Abstract Background In eukaryotes, ABC transporters that utilize the energy of ATP hydrolysis to expel cellular substrates into the environment are responsible for most of the efflux from cells. Many members of the superfamily of ABC transporters have been linked with resistance to multiple drugs or toxins. Owing to their medical and toxicological importance, members of the ABC superfamily have been studied in several model organisms and warrant examination in newly sequenced genomes. Results A total of 165 ABC transporter genes, constituting a highly expanded superfamily relative to its size in other eukaryotes, were identified in the macronuclear genome of the ciliate Tetrahymena thermophila. Based on ortholog comparisons, phylogenetic topologies and intron characterizations, each highly expanded ABC transporter family of T. thermophila was classified into several distinct groups, and hypotheses about their evolutionary relationships are presented. A comprehensive microarray analysis revealed divergent expression patterns among the members of the ABC transporter superfamily during different states of physiology and development. Many of the relatively recently formed duplicate pairs within individual ABC transporter families exhibit significantly different expression patterns. Further analysis showed that multiple mechanisms have led to functional divergence that is responsible for the preservation of duplicated genes. Conclusion Gene duplications have resulted in an extensive expansion of the superfamily of ABC transporters in the Tetrahymena genome, making it the largest example of its kind reported in any organism to date. Multiple independent duplications and subsequent divergence contributed to the formation of different families of ABC transporter genes. Many of the members within a gene family exhibit different expression patterns. The combination of gene duplication followed by both sequence divergence and acquisition of new patterns of

  17. La estria supranuclear de las células ciliadas en la rinitis alérgica Supranuclear stria of ciliated cells in allergic rhinitis

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    Ana Zerdiew

    2007-08-01

    Full Text Available Se estudiaron 80 pacientes adultos alérgicos, que cursaron con los siguientes cuadros clínicos: 16 casos de rinitis intermitente y 64 de rinitis persistente. Se realizó el recuento porcentual de la estría supranuclear de las células ciliadas, respecto de los leucocitos presentes en los extendidos obtenidos por toma endonasal. Con los datos obtenidos se clasificaron los extendidos en 4 grupos; Grupo A (N=23: predominio leucocitario eosinófilo con eosinofilia nasal >10%, Grupo B (N=15: abundantes leucocitos neutrófilos y eosinofilia nasal >10%, Grupo C (N=29: con escasos leucocitos, Grupo D (N=13: con abundantes leucocitos de predominio neutrófilo sin eosinofilia. Se observó que el incremento porcentual de estría supranuclear se correlacionó con eosinofilia nasal >10% y con las muestras que presentaron escasos leucocitos. Sin embargo se evidenció una marcada disminución del porcentaje de estría supranuclear en la leucocitosis neutrófila de etiología bacteriana.Nasal secretions were studied in 80 allergic adults patients: 16 with intermittent rhinitis and 64 with persistent rhinitis. The percentage of supranuclear stria of ciliated cells with regard to leucocytes was studied by nasal scraping. Four groups of patients were classified according to nasal leucocytic predominance: patients with eosinophilic predominance with eosinophils > 10% in Group A (N=23, patients with abundant neutrophils and eosinophils >10% in Group B (N=15, patients with scant leucocytes in Group C (N=29, patients with neutrophilic predominance without eosinophils in Group D (N=13. An increase of supranuclear stria percentage was correlated to eosinophils > 10% and also correlated to scant leucocytes. Nevertheless, a significant decrease of supranuclear stria percentage was observed in neutrophilic leukocytosis of bacterial etiology.

  18. Morphology and phylogenetic analysis of two oxytrichid soil ciliates from China, Oxytricha paragranulifera n. sp. and Oxytricha granulifera Foissner and Adam, 1983 (Protista, Ciliophora, Hypotrichia).

    Science.gov (United States)

    Shao, Chen; Lv, Zhao; Pan, Ying; Al-Rasheid, Khaled A S; Yi, Zhenzhen

    2014-09-01

    The morphology and infraciliature of two hypotrichous ciliates, Oxytricha paragranulifera n. sp. and Oxytricha granulifera Foissner and Adam, 1983, collected respectively from the surface of a sandy soil in the Huguang mangrove forest, Zhanjiang, China, and the surface of soil in a forest beside Ziwu Road, Xian, north-west China, were examined. O. paragranulifera n. sp. is characterized by an elongate body with slightly tapered anterior end, two macronuclear nodules and two micronuclei, paroral and endoral in Stylonychia-pattern, colourless cortical granules distributed in clusters or irregular short rows, adoral zone occupying 37 % of the body length, marginal rows almost confluent posteriorly, six dorsal kineties and three caudal cirri, caudal cirri and dorsal bristles almost indistinguishable when viewed in vivo. The well-known O. granulifera Foissner and Adam, 1983 was also redescribed and can be separated from the novel species by having cortical granules arranged along dorsal kineties and marginal rows on both sides (vs grouped in clusters as well as in short irregular rows), paroral and endoral in Oxytricha-pattern (vs in Stylonychia-pattern), macronuclear nodules obviously detached (vs adjacent) and a non-saline terrestrial habitat (vs saline terrestrial). The separation of these two taxa is also firmly supported by the molecular data, which show a significant difference between the two in their SSU rRNA gene sequences (similarity 97.1 %). Phylogenetic analyses based on SSU rRNA gene sequence data suggest a close relationship within the Oxytrichidae assemblage between O. paragranulifera n. sp. and O. granulifera. PMID:24928427

  19. SSU rDNA sequence diversity and seasonally differentiated distribution of nanoplanktonic ciliates in neritic Bohai and Yellow Seas as revealed by T-RFLP.

    Directory of Open Access Journals (Sweden)

    Jun Dong

    Full Text Available Nanociliates have been frequently found to be important players in the marine microbial loop, however, little is known about their diversity and distribution in coastal ecosystems. We investigated the molecular diversity and distribution patterns of nanoplanktonic oligotrich and choreotrich (OC ciliates in surface water of three neritic basins of northern China, the South Yellow Sea (SYS, North Yellow Sea (NYS, and Bohai Sea (BS in June and November 2011. SSU rRNA gene clone libraries generated from three summertime samples (sites B38, B4 and H8 were analyzed and revealed a large novel ribotype diversity, of which many were low-abundant phylotypes belonging to the subclass Oligotrichia, but divergent from described morphospecies. Based on the data of terminal-restriction fragment length polymorphism (T-RFLP analysis of all 35 samples, we found that the T-RF richness was generally higher in the SYS than in the BS, and negatively correlated with the molar ratio of P to Si. Overall, multidimensional scaling and permutational multivariate analysis of variance of the community turnover demonstrated a distinct seasonal pattern but no basin-to-basin differentiation across all samples. Nevertheless, significant community differences among basins were recognized in the winter dataset. Mantel tests showed that the environmental factors, P:Si ratio, water temperature and concentration of dissolved oxygen (DO, determined the community across all samples. However, both biogeographic distance and environment shaped the community in winter, with DO being the most important physicochemical factor. Our results indicate that the stoichiometric ratio of P:Si is a key factor, through which the phytoplankton community may be shaped, resulting in a cascade effect on the diversity and community composition of OC nanociliates in the N-rich, Si-limited coastal surface waters, and that the Yellow Sea Warm Current drives the nanociliate community, and possibly the

  20. The protein pheromone Er-1 of the ciliate Euplotes raikovi stimulates human T-cell activity: Involvement of interleukin-2 system

    Energy Technology Data Exchange (ETDEWEB)

    Cervia, Davide, E-mail: d.cervia@unitus.it [Department for Innovation in Biological, Agro-food and Forest systems (DIBAF), University of Tuscia, Viterbo (Italy); Department of Biomedical and Clinical Sciences, “Luigi Sacco” University Hospital, University of Milan, Milano (Italy); Catalani, Elisabetta; Belardinelli, Maria Cristina [Department for Innovation in Biological, Agro-food and Forest systems (DIBAF), University of Tuscia, Viterbo (Italy); Perrotta, Cristiana [Department of Biomedical and Clinical Sciences, “Luigi Sacco” University Hospital, University of Milan, Milano (Italy); Picchietti, Simona [Department for Innovation in Biological, Agro-food and Forest systems (DIBAF), University of Tuscia, Viterbo (Italy); Alimenti, Claudio [Department of Environmental and Natural Sciences, University of Camerino, Camerino (Italy); Casini, Giovanni; Fausto, Anna Maria [Department for Innovation in Biological, Agro-food and Forest systems (DIBAF), University of Tuscia, Viterbo (Italy); Vallesi, Adriana [Department of Environmental and Natural Sciences, University of Camerino, Camerino (Italy)

    2013-02-01

    Water-soluble protein signals (pheromones) of the ciliate Euplotes have been supposed to be functional precursors of growth factors and cytokines that regulate cell–cell interaction in multi-cellular eukaryotes. This work provides evidence that native preparations of the Euplotes raikovi pheromone Er-1 (a helical protein of 40 amino acids) specifically increases viability, DNA synthesis, proliferation, and the production of interferon-γ, tumor necrosis factor-α, interleukin (IL)-1β, IL-2, and IL-13 in human Jurkat T-cells. Also, Er-1 significantly decreases the mRNA levels of the β and γ subunits of IL-2 receptor (IL-2R), while the mRNA levels of the α subunit appeared to be not affected. Jurkat T-cell treatments with Er-1 induced the down-regulation of the IL-2Rα subunit by a reversible and time-dependent endocytosis, and increased the levels of phosphorylation of the extracellular signal-regulated kinases (ERK). The cell-type specificity of these effects was supported by the finding that Er-1, although unable to directly influence the growth of human glioma U-373 cells, induced Jurkat cells to synthesize and release factors that, in turn, inhibited the U-373 cell proliferation. Overall, these findings imply that Er-1 coupling to IL-2R and ERK immuno-enhances T-cell activity, and that this effect likely translates to an inhibition of glioma cell growth. -- Highlights: ► Euplotes pheromone Er-1 increases the growth of human Jurkat T-cells. ► Er-1 increases the T-cell production of specific cytokines. ► Er-1 activates interleukin-2 receptor and extracellular signal-regulated kinases. ► The immuno-enhancing effect of Er-1 on Jurkat cells translates to an inhibition of human glioma cell growth.

  1. Protocruzia,a highly ambiguous ciliate(Protozoa;Ciliophora):Very likely an ancestral form for Heterotrichea,Colpodea or Spirotrichea? With reevaluation of its evolutionary position based on multigene analyses

    Institute of Scientific and Technical Information of China (English)

    Thorsten; STOECK; Shin; Mann; Kyoon; Al-Rasheid; Khaled; A.; S.; Al-Khedhairy; Abdulaziz; A.

    2010-01-01

    The ciliate genus Protocruzia belongs to one of the most ambiguous taxa considering its systematic position,possibly as a member of the classes Heterotrichea,Spirotrichea or Karyorelictea,which is tentatively placed into Spirotrichea in Lynn’s 2008 system.To test these hypotheses,multigene trees(Bayesian inference,evolutionary distance,maximum parsimony,and maximum likelihood) were constructed using the small subunit rRNA(SSU rRNA) gene,internal transcribed spacer 2(ITS2) and a protein coding gene(histone H4).All analyses agree that:(1) four morphotypes of Protocruzia from different geographical origins group together and form a monophyletic clade,which cannot be assigned to any of the eleven described ciliate classes;(2) it is invariably positioned on an isolated branch separated from the class Spirotrichea suggesting that this clade should be clearly removed from Spirotrichea;(3) this leads us to hypothesize that this taxon may indeed represent a lineage on a class rank.Based on the fact that it is,both morphologically and in molecular features,closely related to the heterotrichs,Colpodea and Oligohymenophorea,Protocruziida might be an ancestral form for the subphylum Intramacronucleata in the evolutionary line from the class Heterotrichea(subphylum Postciliodesmatophora) to higher taxa.

  2. Improvement of silver impregnation technique (Protargol) to obtain morphological features of protists ciliates, flagellates and opalinates Aperfeiçoamento da técnica de impregnação pela prata (protargol) para obtenção de caracteres morfológicos de protistas ciliados, flagelados e opalinatas

    OpenAIRE

    I. D. da SILVA-NETO

    2000-01-01

    The research on ciliates, flagelates and opalinates have been widespread by the utilization of techniques employing silver impregnation (Protargol), modified by several authors. However, these are time consuming and its results are variable. The present work is a variant of the technique described by Tuffrau (1964, 1967) showing some adaptations made in our laboratory. The organisms can be preserved by different fixatives (alcoholic Bouin, Stieve's fluid, 2.5% glutaraldehyde and others) and t...

  3. On the reliability of Fusarium oxysporum f. sp. niveum research: Do we need standardized testing methods?

    Science.gov (United States)

    Fusarium oxysporum f. sp. nivium (Fon) is a pathogen highly variable in aggressiveness that requires a standardized testing method to more accurately define isolate aggressiveness (races) and to identify resistant watermelon lines. Isolates of Fon vary in aggressiveness from weakly to highly aggres...

  4. Morphology and phylogenies of two hypotrichous brackish-water ciliates from China, Neourostylopsis orientalis n. sp. and Protogastrostyla sterkii (Wallengren, 1900) n. comb., with establishment of a new genus Neourostylopsis n. gen. (Protista, Ciliophora, Hypotrichia).

    Science.gov (United States)

    Chen, Xiangrui; Shao, Chen; Liu, Xihan; Huang, Jie; Al-Rasheid, Khaled A S

    2013-03-01

    This paper investigates the morphology, infraciliature and small-subunit (SSU) rRNA gene sequences of two hypotrichous ciliates, Neourostylopsis orientalis n. sp., and Protogastrostyla sterkii (Wallengren, 1900) n. comb. (basionym Gastrostyla sterkii), collected from coastal waters in southern China. Neourostylopsis orientalis n. sp. is diagnosed mainly by the arrangement of brownish cortical granules, the numbers of adoral membranelles and frontal and transverse cirri and the characteristics of its midventral cirral pairs. The SSU rRNA gene phylogeny strongly supports the establishment of the new genus Neourostylopsis n. gen., which is characterized mainly by the following features: frontal and transverse cirri clearly differentiated, buccal cirri present, two frontoterminal cirri, midventral complex composed of midventral pairs only and not exceeding the halfway point of the cell, more than one row of marginal cirri on each side which derive from individual anlagen within each parental row, caudal cirri lacking. Thus, two new combinations are required: Neourostylopsis songi (Lei et al., 2005) n. comb., and Neourostylopsis flavicana (Wang et al., 2011) n. comb. Additionally, improved diagnoses for both Metaurostylopsis and Apourostylopsis are supplied in this study. Protogastrostyla sterkii (Wallengren, 1900) n. comb. differs from the similar congener Protogastrostyla pulchra mainly in body shape, ratio of buccal field to body length in vivo and molecular data. Based on the present studies, we conclude that the estuarine population of P. pulchra collected by J. Gong and others [Gong et al., J Eukaryot Microbiol (2007) 54, 468-478] is a population of P. sterkii. PMID:23355699

  5. CX3CR1 Is Expressed in Differentiated Human Ciliated Airway Cells and Co-Localizes with Respiratory Syncytial Virus on Cilia in a G Protein-Dependent Manner.

    Directory of Open Access Journals (Sweden)

    Kwang-Il Jeong

    Full Text Available Respiratory syncytial virus (RSV is the principal cause of bronchiolitis in infants and a significant healthcare problem. The RSV Glycoprotein (G mediates attachment of the virus to the cell membrane, which facilitates interaction of the RSV Fusion (F protein with nucleolin, thereby triggering fusion of the viral and cellular membranes. However, a host protein ligand for G has not yet been identified. Here we show that CX3CR1 is expressed in the motile cilia of differentiated human airway epithelial (HAE cells, and that CX3CR1 co-localizes with RSV particles. Upon infection, the distribution of CX3CR1 in these cells is significantly altered. Complete or partial deletion of RSV G results in viruses binding at least 72-fold less efficiently to cells, and reduces virus replication. Moreover, an antibody targeting an epitope near the G protein's CX3CR1-binding motif significantly inhibits binding of the virus to airway cells. Given previously published evidence of the interaction of G with CX3CR1 in human lymphocytes, these findings suggest a role for G in the interaction of RSV with ciliated lung cells. This interpretation is consistent with past studies showing a protective benefit in immunizing against G in animal models of RSV infection, and would support targeting the CX3CR1-G protein interaction for prophylaxis or therapy. CX3CR1 expression in lung epithelial cells may also have implications for other respiratory diseases such as asthma.

  6. 高锰酸钾药浴治疗对虾聚缩虫病初报

    Institute of Scientific and Technical Information of China (English)

    郑国兴; 沈亚林; 李何

    1987-01-01

    Zoothamnium disease js an ubiquitous disease in the culture of Penaeus orientalis. In this paper, the results of treatment of Zoothamnium disease with potassium permanganate in the laboratory trims are reported. The data showed that potassium permanganate at 5 ppm was found to be effective in removing Zoothamnium from the gill filaments and body surface of Penaeus orientalis.

  7. Separation and electrophysiology of ciliated olfactory receptor neu-rons in Bostrychus sinensis%中华乌塘鳢纤毛嗅神经元的分离及其电生理

    Institute of Scientific and Technical Information of China (English)

    赖晓健; 洪万树; 杨薇

    2013-01-01

    The ciliated olfactory receptor neurons (cORNs) in the olfactory sac were dissociated from Bostrichthys sinensis by enzymatic and mechanical methods. The whole-cell patch-clamp technique was used to determine the resting potential, action potential and voltage-gated ion channel current. The results showed that the B. sinensis cORN was a bipolar neuron, containing cell body, axon and dendrites with olfactory knobs and cilia. The resting and action potential peaks of ciliated olfactory receptor neurons were (–57 ± 6.37) mV and (38.30 ± 0.95) mV, respec-tively. In response to depolarizing voltage steps pulse stimulation from –60 ~ +80 mV, the transient inward current was activated between –60 mV and –40 mV, and reached a peak averaging (–69.08 ± 44.15) pA at −20 to 0 mV; the outward current reached a peak averaging (267.55 ± 73.67) pA at +40 mV. The present study provides a base theory for research in the electrophysiological mechanisms of sex pheromones with their receptors and the application of sex pheromones.%  应用酶消化和机械吹打相结合的方法,快速分离出中华乌塘鳢(Bostrychys sinensis)嗅囊中纤毛嗅觉感受神经元.再应用全细胞膜片钳技术记录中华乌塘鳢纤毛嗅觉感受神经元的静息电位、动作电位及电压门控离子通道电流等电生理学特征.结果表明,中华乌塘鳢纤毛嗅觉感受神经元具有典型的双级神经元结构特征,包括细胞体,轴突,树突以及树突顶端的嗅结和纤毛.嗅觉感受神经元静息电位为(−57±6.37) mV,动作电位峰值为(38.30±0.95) mV.在−60~+80 mV 的阶梯去极化脉冲刺激中,内向电流在−60~−40 mV 激活,−20~0 mV 达到最大值,内向电流峰值为(−69.08±44.15) pA.外向电流在+40 mV 时达最大值,峰值为(267.55±73.67) pA.本研究结果为纤毛嗅觉感受神经元上性信息素受体感受性信息素的电生理机制以及性信息素的应用提供了方法和理论基础.

  8. Caryotricha minuta (Xu et al., 2008) nov. comb., a unique marine ciliate (Protista, Ciliophora, Spirotrichea), with phylogenetic analysis of the ambiguous genus Caryotricha inferred from the small-subunit rRNA gene sequence.

    Science.gov (United States)

    Miao, Miao; Shao, Chen; Jiang, Jiamei; Li, Liqiong; Stoeck, Thorsten; Song, Weibo

    2009-02-01

    A population of Kiitricha minuta Xu et al., 2008, a small kiitrichid ciliate, was isolated from a brackish water sample in Jiaozhou Bay, Qingdao, northern China. After comparison of its morphology and infraciliature, it is believed that this morphotype should be assigned to the genus Caryotricha; hence, a new combination is suggested, Caryotricha minuta (Xu et al., 2008) nov. comb. The small-subunit (SSU) rRNA gene sequence was determined in order to elucidate the phylogenetic position of this poorly known, ambiguous genus. The organism can be clearly separated from its congener, Caryotricha convexa Kahl, 1932, by the extremely shortened ventral cirral rows in the posterior ends. Based on the data available, an improved diagnosis is given for the genus: marine Kiitrichidae with prominent buccal field; two highly developed undulating membranes; non-grouped, uniform cirral rows on both ventral and dorsal sides; enlarged transverse cirri present, which are the only differentiated cirri; marginal cirri not present; one short migratory row located posterior to buccal field; structure of dorsal kineties generally in Kiitricha pattern. The sequence of the SSU rRNA gene of C. minuta differs by 13 % from that of Kiitricha marina. Molecular phylogenetic analyses (Bayesian inference, least squares, neighbour joining, maximum parsimony) indicate that Caryotricha, together with Kiitricha, diverges at a deep level from all other spirotrichs. Its branching position is between Phacodiniidia and Licnophoridia. The results strongly support the distinct separation of the Kiitricha-Caryotricha clade, which always branches basal to the Stichotrichia-Hypotrichia-Oligotrichia-Choreotrichia assemblage. These results also confirm the previous hypothesis that the Kiitricha-Caryotricha group, long assumed to be a close relation to the euplotids, represents a taxon at subclass level within the spirotrichs. PMID:19196791

  9. Chemical Treatment on Protozoan Zoothamnium sp. In Cage Cultured Siniperca scherzeri Steindachner%苯扎溴铵治疗斑鳜聚缩虫病试验

    Institute of Scientific and Technical Information of China (English)

    李文宽; 宋文华; 阎有利; 赵晓临; 李兴友

    2008-01-01

    本文报道了网箱斑鳜聚缩虫病的主要症状、流行情况及用苯扎溴铵溶液(5%)室内外药浴治疗试验结果.结果表明:在水温11℃~20℃条件下,用苯扎溴铵溶液药浴15~30min,浓度在100~800mg/1均无效,1500mg/1以上可有效杀死聚缩虫.

  10. Using the Ciliate Protozoan Vorticella in Teaching.

    Science.gov (United States)

    Jones, Alick R.

    1980-01-01

    Describes methods for collection, culture, observation, and making permanent stained preparations of the protozoan vorticella. Suggestions are made for experiments to investigate growth, reproduction, settlement, ecology, feeding, and osmoregulation. (CS)

  11. Sex determination: ciliates' self-censorship.

    Science.gov (United States)

    Bloomfield, Gareth

    2014-07-01

    Differentiation involves the expression of certain latent cellular characteristics and the repression of others. A new study has revealed how Paramecium uses short RNAs to delete information from the somatic genome of one of its two sexes. PMID:25004369

  12. Fontes de lipídeos e monensina na alimentação de novilhos Nelore e sua relação com a população de protozoários ciliados do rúmen Effects of feeding monensin and different sources of fat on the ruminal population of ciliate protozoa in Nellore steers

    Directory of Open Access Journals (Sweden)

    Amaury Camilo Valinote

    2005-08-01

    Full Text Available Quatro novilhos Nelore, fistulados e canulados no rúmen, foram distribuídos em um delineamento quadrado latino 4 x 4, para avaliar o caroço de algodão e o sal de cálcio de ácidos graxos como fontes de gordura assim como o efeito da monensina em dietas com caroço de algodão, sobre a população de protozoários ciliados e o pH do rúmen. Os tratamentos experimentais foram: dieta controle (CTRL, dieta com sal de cálcio de ácidos graxos (SC, dieta com caroço de algodão (CA e dieta com caroço de algodão sem monensina (CASM. Amostras do conteúdo ruminal foram colhidas às 0, 2, 4, 6 e 8 horas após a alimentação. Foi utilizada câmara de contagem de Sedgwick-Rafter com capacidade de 1mL e microscópio ótico comum provido de retículo com área de 0,4362 mm², para identificação dos gêneros de ciliados. Não houve diferença entre os tratamentos para o pH do rúmen. Os tratamentos com caroço de algodão reduziram todos os gêneros de protozoários ciliados, em especial de Entodinium, provavelmente pela gordura liberada. Os protozoários dos gêneros Diplodinium, Epidinium e Eudiplodinum e o número total de protozoários foram os únicos que sofreram influência do tempo de alimentação. Sais de cálcio de ácidos graxos foram suficientemente inertes no ambiente ruminal, não afetando o número de protozoários ciliados no rúmen de bovinos Nelore. A utilização de monensina em dietas contendo caroço de algodão e alto concentrado não influenciou o número de protozoários ciliados no rúmen de bovinos Nelore.Four ruminally and duodenally cannulated Nellore steers were assigned to a 4 x 4 latin square to study the effects of feeding monensin (M and different sources of fat on the ruminal population of ciliate protozoa and ruminal pH. The experimental diets contained (DM basis 19% of sugar cane and were supplemented with M [control (CTRL], M plus calcium salts of fatty acids (CSFA, M plus whole cottonseed (MWCS, or only WCS

  13. Protozoários ciliados do rúmen de bovinos e bubalinos alimentados com dietas suplementadas com monensina ou própolis Ruminal ciliate protozoa of cattle and buffalo fed on diet supplemented with monensin or extracts from propolis

    Directory of Open Access Journals (Sweden)

    Thaís Barros Ríspoli

    2009-01-01

    Full Text Available O objetivo deste trabalho foi avaliar o efeito de dietas suplementadas com monensina ou produtos à base de própolis, nas populações de protozoários ciliados no rúmen de bovinos (Bos taurus e bubalinos (Bubalus bubalis. Quatro bovinos da raça Holandesa e quatro búfalos da raça Murrah adultos, fistulados no rúmen, foram distribuídos em delineamento quadrado latino (4x4. A dieta constituiu-se de 50% de silagem de milho e 50% de concentrado à base de milho em grãos e farelo de soja, com adição de monensina sódica ou aditivo à base de própolis LLOSA2 ou LLOSC1. As amostras do conteúdo ruminal foram coletadas duas horas após a alimentação. O gênero Entodinium foi o mais representativo em todos os tratamentos, para ambas as raças de ruminantes. Em búfalos, foi observado o efeito redutor do tratamento LLOSC1 nas populações do gênero Entodinium, além do efeito redutor dos tratamentos monensina e LLOSA2 sobre os gêneros da subfamília Diplodiniinae. A média de ciliados foi maior em bubalinos (56x10(4 mL-1 do que em bovinos (26x10(4 mL-1. Houve aumento do pH ruminal dos bovinos no tratamento com monensina. O extrato de própolis LLOSC1 reduziu os ciliados do rúmen em bubalinos.The aim of this work was to evaluate the effect of diets supplemented with monensin or with extracts of propolis, on the population of ciliate protozoa in the rumen of cattle (Bos taurus and water buffalo (Bubalus bubalis. Four Holstein cattle and four Murrah buffalo, fistulated in the rumen, were distributed in 4x4 Latin square design. The diet was constituted by 50% corn silage and 50% concentrate based on corn grain and soybean meal, and the supplementation of monensin sodium or propolis extracts LLOSA2 or LLOSC1. Samples of ruminal contents were collected two hours after feeding. The genus Entodinium was the most common in all treatments for both cattle and buffalo. The LLOSC1 treatment reduced the populations of the genus Entodinium in buffalo

  14. Níveis de proteína degradável para novilhas em crescimento sobre a concentração de protozoários ciliados e outros parâmetros ruminais Levels of degradable protein given to heifers for the ciliate protozoa concentration and other ruminal parameters

    Directory of Open Access Journals (Sweden)

    Joaquim Balcells

    2001-05-01

    Full Text Available Em um ensaio de controle de parâmetros ruminais (pH, ritmo de trânsito (%h, volume ruminal (l, e concentração de protozoários ciliados, foram utilizadas quatro novilhas Holstein, canuladas no rúmen e duodeno, recebendo dietas com 4 níveis de proteína degradável, sem suplementar ou suplementadas com 25, 50 e 75 gramos de proteína degradável por quilo de concentrado em forma de uréia e caseína (98,2 e 93,2% de matéria orgânica e proteína bruta, respectivamente. As rações experimentais foram compostas por 25% de palha de cevada sem tratar e 75% de concentrado formulado em base a diferentes proporções (25/75 e 75/25 de milho/cevada, com 5% de resíduo de trigo e 5% de suplemento vitamínico mineral. Uma contínua infusão de marcador de fluxo de fase líquida (Cr-EDTA foi executada. Os oito tratamentos experimentais (2 dietas x 4 níveis de infusão foram administrados em 8 períodos de balanço em um delineamento cross-over, em esquema fatorial. O nível de infusão de N degradável afetou de forma significativa os valores médios ponderados de pH, que decresceram ao aumentar a suplementação (p 3/mL que de cevada (59,5 x 103/mL; p Entodinium alcançou 87,8% da população total. O gênero Epidinium apresentou menores valores com a dieta de cevada (3,73 vs. 1,89x103/mL, p 3/mL, p 5/mL, p In this experiment four Holstein heifers fitted with rumen and duodenum canulae were utilized to evaluate the rumen parameters as pH, passage rate (%/h, volume (L and ciliated protozoa concentration, when fed diets with four levels of rumen degradable protein. This was achieved supplementing 0, 25, 50 or 75 grams of degradable protein per kg of concentrate as a urea and casein (98.2% OM and 93.2% CP. The diets had 25% of barley straw without treatment and 75% concentrate formulated to contain different proportions (25/75 and 75/25 of corn and barley and also 5% of wheat residue and 5% of mineral and vitamin supplement. A continuous infusion of

  15. Efeito da monensina e do óleo de soja sobre os protozoários ciliados do rúmen e correlação dos protozoários com parâmetros da fermentação ruminal e digestivos Effect of monensin and soybean oil on rumen ciliate protozoa and correlation between protozoa with ruminal fermentation and digestive parameters

    Directory of Open Access Journals (Sweden)

    Isabel Martinele

    2008-06-01

    lactating cows on the counting of ciliate protozoa beyond establishing correlations between number of protozoa with some parameters of digestion and ruminal fermentation. The treatments consisted of the inclusion of 33 ppm of sodium monensin or soybean oil at 4% DM, as following: control diet, without oil or monensin - CT; diet with monensin - MN; diet with soybean oil - OL; diet with the combination of 33 ppm of monensin and 4% of soybean oil - OM. Occurrence of 11 ciliate genera was observed, being Entodinium the predominant in all treatments. No significant soybean oil × monensin interaction was observed on protozoa number and genera. The genera Entodinium, Dasytricha, Eremoplastron and Isotricha reduced in the diets with oil, while monensin reduced the counting of Dasytricha, Eremoplastron and Epidinium. The total number of ciliate protozoa and cellulolytics protozoa was reduced by soybean oil and monensin effects, showing a defaunatory additive effect when combined the oil and the monensin. The ciliate cellulolytics was reduced by linoleic acid intake and was related positively with NDF ruminal digestibility and ruminal ammonia. The total number of protozoa was correlated with the molar proportion of propionate in the ruminal liquid, suggesting that monensin and soybean oil, due their defaunatory effect, can reduce the loss of methane in the rumen.

  16. Chitinolytic activity of the rumen ciliates Diploplastron affine

    Czech Academy of Sciences Publication Activity Database

    Belzecki, G.; Miltko, R.; Michalowski, T.; Šimůnek, Jiří; Kopečný, Jan

    2008-01-01

    Roč. 53, č. 3 (2008), s. 201-203. ISSN 0015-5632 R&D Projects: GA ČR GA525/05/2584 Grant ostatní: Ministry of Scientific Research and Information Technology Poland(PL) 2 P06Z 052 30 Institutional research plan: CEZ:AV0Z50450515 Keywords : Diploplastron affine Subject RIV: EE - Microbiology, Virology Impact factor: 1.172, year: 2008

  17. Ecotoxicity assessment using ciliate cells in millifluidic droplets.

    Science.gov (United States)

    Illing, Rico; Burkart, Corinna; Pfitzner, Daniel; Jungmann, Dirk; Baraban, Larysa; Cuniberti, Gianaurelio

    2016-03-01

    Precise analysis of the aquatic cells and their responses to the toxic chemicals, i.e., water disinfective agents, is of crucial importance due to their role in the ecosystem. We demonstrate the application of the droplets based millifluidic tool for isolating and longtime monitoring of single Paramecium tetraurelia cells using a large number of water-in-oil emulsion droplets. Due to the automated monitoring of the fluorescence signal, the droplets containing cells are distinguished from the empty reservoirs. A viability indicator is used to follow the metabolic dynamic of the cells in every single droplet. Finally, we perform ecotoxicity tests in droplets, exposing the encapsulated paramecia cells to silver nitrate for determination of EC50 levels, and compare the output with the conventional microtiter plate assay. PMID:27051472

  18. A survey of entodiniomorphid ciliates in chimpanzees and bonobos

    Czech Academy of Sciences Publication Activity Database

    Pomajbíková, K.; Petrželková, Klára Judita; Profousová, Ilona; Petrášová, Jana; Kišidayová, S.; Váradyová, Z.; Modrý, David

    2010-01-01

    Roč. 142, č. 1 (2010), s. 42-48. ISSN 0002-9483 R&D Projects: GA ČR GA524/06/0264; GA AV ČR KJB600930615; GA MŠk MEB080890 Institutional research plan: CEZ:AV0Z60930519; CEZ:AV0Z60220518 Keywords : Troglodytella abrassarti * entodiniomorphids * Pan troglodytes * Pan paniscus * captivity Subject RIV: EG - Zoology Impact factor: 2.693, year: 2010

  19. Unsteady feeding and optimal strokes of model ciliates

    CERN Document Server

    Michelin, Sebastien

    2012-01-01

    The flow field created by swimming microorganisms not only enables their locomotion but also leads to advective transport of nutrients. In this paper we address analytically and computationally the link between unsteady feeding and unsteady swimming on a model microorganism, the spherical squirmer, actuating the fluid in a time-periodic manner. We start by performing asymptotic calculations at low P\\'eclet number (Pe) on the advection-diffusion problem for the nutrients. We show that the mean rate of feeding as well as its fluctuations in time depend only on the swimming modes of the squirmer up to order Pe^(3/2), even when no swimming occurs on average, while the influence of non-swimming modes comes in only at order Pe^2. We also show that generically we expect a phase delay between feeding and swimming of 1/8th of a period. Numerical computations for illustrative strokes at finite Pe confirm quantitatively our analytical results linking swimming and feeding. We finally derive, and use, an adjoint-based opt...

  20. Preparation Of Ciliated Protozoa For Scanning Electron Microscopy

    OpenAIRE

    sprotocols

    2014-01-01

    Author: Microscopy Laboratory General notes: The same procedures are used to fix and stain cells for SEM and for TEM. Cells can be fixed using conventional [glutaraldehyde-osmium fixation](http://www.ukans.edu/~bcmic/MEIL/techniques/tetrahy.html) described for transmission electron microscopy. To preserve ciliary orientation, use the "instant fixation" protocol described here. With this method, the cortex and ciliary beat form is well preserved but the cytoplasm is poorly preser...

  1. Imine-Functionalized Triazatriangulenium Platforms: Towards an Artificial Ciliated Epithelium.

    Science.gov (United States)

    Hammerich, Melanie; Rusch, Talina; Krekiehn, Nicolai R; Bloedorn, Andreas; Magnussen, Olaf M; Herges, Rainer

    2016-06-17

    Triazatriangulenium (TATA) platforms have been used to prepare highly ordered, self-assembled monolayers of free- and vertically standing imines on Au(111) surfaces. Upon irradiation, the imines undergo trans-cis isomerization and a fast thermal reaction (t1/2 =0.58 s at 20 °C) back to the more stable trans form. It is known that the photochemical reaction proceeds through rotation of the C=N bond and the thermochemical reaction through inversion at the N atom. The imine motors, therefore, should be able to induce a net displacement of particles above the surface similar to cilia epithelia in nature. PMID:27016909

  2. Effect of an energy-deficient diet on populations of ciliate protozoans in bovine rumen Efeito da deficiência de energia na dieta sobre a população de protozoários ciliados do rúmen de bovinos

    Directory of Open Access Journals (Sweden)

    P.C. Soares

    2008-02-01

    Full Text Available Ten young rumen-cannulated crossbred steers were randomly divided into two groups: a control group (C; n=4, which was fed a balanced diet for daily weight gain of 900g; and a pronounced energy-deprived group (PED; n=6, receiving 30% less of the required energy for maintenance. After 140 days of these alimentary regimes, rumen fluid and urine samples were collected for biochemical and functional tests, before feeding and at 1, 3, 6, and 9 hours after feeding. The energy-deprivation diet caused a significant reduction in the number of Entodinium, Eodinium, Isotricha, Dasytricha, Eremoplastron, Eudiplodinium, Metadinium, Charonina, Ostracodinium, and Epidinium protozoa. There was no effect of the time of sampling in both groups on the total number of ciliates in rumen fluid. A higher number of protozoan forms in binary division were recorded in the control group, at the 6th and 9th hours after feeding (PForam utilizados 10 novilhos mestiços com cânula ruminal, distribuídos em dois grupos: no grupo controle (C; n=4 receberam dieta balanceada para ganho diário de 900g; no grupo tratado com carência pronunciada de energia (CP; n=6, receberam dieta com 30% a menos do nível de mantença em energia. Após 140 dias sob esses regimes de alimentação, foram coletadas amostras do fluido ruminal e urina, para realização de provas bioquímicas e funcionais, antes e às 1, 3, 6 e 9 horas após o fornecimento do alimento. A carência energética resultou em diminuição significativa na quantidade dos protozoários Entodinium, Eodinium, Isotricha, Dasytricha, Eremoplastron, Eudiplodinium, Metadinium, Charonina, Ostracodinium e Epidinium. Não houve efeito da hora de coleta sobre o total de ciliados nos grupos C e CP. Maior número de formas em divisão binária foi registrado no grupo C, na sexta e nona horas pós-alimentação (P<0,019. Observaram-se altas correlações positivas entre a contagem total de protozoários e a fermentação de glicose, am

  3. The pink shrimp Farfantepenaeus duorarum, its symbionts and helminths as bioindicators of chemical pollution in Campeche Sound, Mexico.

    Science.gov (United States)

    Vidal-Martínez, V M; Aguirre-Macedo, M L; Del Rio-Rodríguez, R; Gold-Bouchot, G; Rendón-von Osten, J; Miranda-Rosas, G A

    2006-06-01

    The pink shrimp Farfantepenaeus duorarum may acquire pollutants, helminths and symbionts from their environment. Statistical associations were studied between the symbionts and helminths of F. duorarum and pollutants in sediments, water and shrimps in Campeche Sound, Mexico. The study area spatially overlapped between offshore oil platforms and natural shrimp mating grounds. Spatial autocorrelation of data was controlled with spatial analysis using distance indices (SADIE) which identifies parasite or pollutant patches (high levels) and gaps (low levels), expressing them as clustering indices compared at each point to produce a measure of spatial association. Symbionts included the peritrich ciliates Epistylis sp. and Zoothamnium penaei and all symbionts were pooled. Helminths included Hysterothylacium sp., Opecoeloides fimbriatus, Prochristianella penaei and an unidentified cestode. Thirty-five pollutants were identified, including polycyclic aromatic hydrocarbons (PAHs), polychlorinated biphenyls (PCBs), pesticides and heavy metals. The PAHs (2-3 ring) in water, unresolved complex mixture (UCM), Ni and V in sediments, and Zn, Cr and heptachlor in shrimps were significantly clustered. The remaining pollutants were randomly distributed in the study area. Juvenile shrimps acquired pesticides, PAHs (2-3 rings) and Zn, while adults acquired PAHs (4-5 rings), Cu and V. Results suggest natural PAH spillovers, and continental runoff of dichlorodiphenyltrichloroethane (DDT), PCBs and PAHs (2-3 ring). There were no significant associations between pollutants and helminths. However, there were significant negative associations of pesticides, UCM and PCBs with symbiont numbers after controlling shrimp size and spatial autocorrelation. Shrimps and their symbionts appear to be promising bioindicators of organic chemical pollution in Campeche Sound. PMID:16768859

  4. An overview of Suctorian ciliates (Ciliophora, Suctorea) as epibionts of halacarid mites (Acari, Halacaridae)

    Digital Repository Service at National Institute of Oceanography (India)

    Dovgal, I.; Chatterjee, T.; Ingole, B.S.

    of Learning, I.S.M. Annexe, P.O. – I.S.M., Dhanbad-826004, Jharkhand, India. E-mail: drtchatterjee@yahoo.co.in 3 Biological Oceanography Division, National Institute of Oceanography, Dona Paula, Goa-403004, India. E-mail: baban@nio.org Abstract Scant... lived predominantly on halacarid adults and deutonymphs, and rarely on protonymphs and larvae because of short life span in protonymph and larva stages. Analysis of the literature and our own data have shown that only four suctorian species observed...

  5. Insights on short–term blooms of planktonic ciliates, provided by an easily recognised genus: Cyrtostrombidium

    Czech Academy of Sciences Publication Activity Database

    Bulit, C.; Macek, Miroslav; Montagnes, D. J. S.

    2013-01-01

    Roč. 52, č. 1 (2013), s. 1-12. ISSN 0065-1583 Institutional support: RVO:60077344 Keywords : bloom * conjugation * parasitism * patch * population dynamics * lagoon Subject RIV: EE - Microbiology, Virology Impact factor: 1.179, year: 2013

  6. The ciliate, Troglodytella abrassarti, contributes to polysaccharide hydrolytic activities in the chimpanzee colon

    Czech Academy of Sciences Publication Activity Database

    Profousová, Ilona; Mihaliková, K.; Laho, T.; Váradyová, Z.; Petrželková, Klára Judita; Modrý, David; Kišidayová, S.

    2011-01-01

    Roč. 56, č. 4 (2011), s. 339-343. ISSN 0015-5632 R&D Projects: GA ČR GA524/06/0264; GA ČR GA206/09/0927 Grant ostatní: VFU(CZ) 245/2009/FVL Institutional research plan: CEZ:AV0Z60930519; CEZ:AV0Z60220518 Keywords : different protozoal populations * low-fiber diets * Eudiplodinium maggii * fibrolytic activity * degrading enzymes Subject RIV: EG - Zoology Impact factor: 0.677, year: 2011

  7. Preliminary Insights into the Impact of Dietary Starch on the Ciliate, Neobalantidium coli, in Captive Chimpanzees

    Czech Academy of Sciences Publication Activity Database

    Schovancová, K.; Pomajbíková, Kateřina; Procházka, Petr; Modrý, David; Bolechová, P.; Petrželková, Klára Judita

    2013-01-01

    Roč. 8, č. 11 (2013), e81374. E-ISSN 1932-6203 R&D Projects: GA ČR GA206/09/0927; GA MŠk(CZ) ED1.1.00/02.0068 Grant ostatní: GA MŠk(CZ) EE2.3.20.0300 Institutional support: RVO:60077344 ; RVO:68081766 Keywords : Balantidium coli * nonstrach polysaccharides * lowland gorillas * resistant strach * evolution * infection * parasites * humans Subject RIV: EE - Microbiology, Virology; EG - Zoology (UBO-W) Impact factor: 3.534, year: 2013

  8. Novel insights into the genetic diversity of Balantidium and Balantidium-like cyst-forming Ciliates

    Czech Academy of Sciences Publication Activity Database

    Pomajbíková, K.; Oborník, Miroslav; Horák, Aleš; Petrželková, Klára Judita; Grim, J. N.; Levecke, B.; Todd, A.; Mulama, M.; Kiyang, J.; Modrý, David

    2013-01-01

    Roč. 7, č. 3 (2013), e2140. ISSN 1935-2735 R&D Projects: GA ČR GA206/09/0927 Institutional support: RVO:68081766 ; RVO:60077344 Keywords : Troglodytella abrassarti * Intestinal parasites * Coli infection Subject RIV: EG - Zoology Impact factor: 4.489, year: 2013

  9. Effects of a ciliate protozoa predator on microbial communities in pitcher plant (Sarracenia purpurea leaves.

    Directory of Open Access Journals (Sweden)

    Taylor K Paisie

    Full Text Available The aquatic communities found within the water filled leaves of the pitcher plant, Sarracenia purpurea, have a simple trophic structure providing an ideal system to study microscale interactions between protozoan predators and their bacterial prey. In this study, replicate communities were maintained with and without the presence of the bactivorous protozoan, Colpoda steinii, to determine the effects of grazing on microbial communities. Changes in microbial (Archaea and Bacteria community structure were assessed using iTag sequencing of 16S rRNA genes. The microbial communities were similar with and without the protozoan predator, with>1000 species. Of these species, Archaea were negligible, with Bacteria comprising 99.99% of the microbial community. The Proteobacteria and Bacteroidetes were the most dominant phyla. The addition of a protozoan predator did not have a significant effect on microbial evenness nor richness. However, the presence of the protozoan did cause a significant shift in the relative abundances of a number of bacterial species. This suggested that bactivorous protozoan may target specific bacterial species and/or that certain bacterial species have innate mechanisms by which they evade predators. These findings help to elucidate the effect that trophic structure perturbations have on predator prey interactions in microbial systems.

  10. Uptake, localization and clearance of quantum dots in ciliated protozoa Tetrahymena thermophila

    International Nuclear Information System (INIS)

    Protozoa as phagocytizing cells have been shown to integrate engineered nanoparticles (NPs), while the mechanism, dynamics and extent of such uptake are unclear. Here our fluorescence microscopy data showed that CdSe/ZnS quantum dots (QDs) with primary size of 12 nm were readily phagocytized into the food vacuoles of Tetrahymena thermophila in a time- and dose-dependent manner. Twenty hours after the exposure to QDs in sublethal concentration the clearance of the QDs from the cells was incomplete suggesting that phagocytosis of QDs into food vacuoles was not the only pathway of uptake by T. thermophila. This was further proven by the results that the inhibition of phagocytosis did not block the internalization of QDs into protozoans. This study provides a new insight into uptake and cellular trafficking of subtoxic concentrations of nanoparticles that may, due to prolonged retention times in the cells, pose risks by potentially becoming available to higher trophic levels. - Highlights: • Tetrahymena thermophila internalized QDs in a dose- and time-dependent manner. • The egested QDs were not significantly biodegraded in the food vacuoles. • In addition to phagocytosis QDs entered protozoa by alternative uptake pathways. • The clearance of the QDs from the cells was incomplete after 20 h in fresh medium. • The prolonged retention time of nontoxic NPs in protozoa could increase their transfer in food chain. - In addition to phagocytosis, quantum dots (QDs) entered protozoans by alternative pathways which did not lead to complete clearance of the QDs from the cells

  11. Experimental identification and analysis of macronuclear non-coding RNAs from the ciliate Tetrahymena thermophila

    DEFF Research Database (Denmark)

    Andersen, Kasper Langebjerg; Nielsen, Henrik

    2012-01-01

    expressed during vegetative growth or sexual reorganization. In order to get an overview of medium-sized (40-500¿nt) RNAs expressed from the Tetrahymena genome, we created a size-fractionated cDNA library from macronuclear RNA and analyzed 80 RNAs, most of which were previously unknown. The most abundant...... class was small nucleolar RNAs (snoRNAs), many of which are formed by an unusual maturation pathway. The modifications guided by the snoRNAs were analyzed bioinformatically and experimentally and many Tetrahymena-specific modifications were found, including several in an essential, but not conserved...

  12. Dealing with the presence of the ciliate Euplotes sp. in cultures of the copepod Acartia tonsa

    DEFF Research Database (Denmark)

    Drillet, Guillaume; Dutz, Jörg

    2014-01-01

    Acartia tonsa fed with Rhodomonas salina. We found that at a concentration of 2 cells ml-1, Euplotes sp. had no effect on the production and hatching success of eggs but increased/decreased the mortality/quality of non-subitaneous eggs. Euplotes sp. had a good fatty acid profile containing high proportion...

  13. Primary structure of the mating pheromone Er-1 of the ciliate Euplotes raikovi.

    Science.gov (United States)

    Raffioni, S; Luporini, P; Chait, B T; Disper, S S; Bradshaw, R A

    1988-12-01

    The complete amino acid sequence of the mating pheromone Er-1 purified from Euplotes raikovi homozygous for mat-1 was determined by automated Edman degradation of the whole protein and peptides generated by cyanogen bromide, trypsin, Staphylococcus aureus V8 protease, and chymotrypsin. The proposed sequence is: Asp-Ala-Cys-Glu-Gln-Ala-Ala-Ile-Gln-Cys-Val-Glu-Ser-Ala-Cys-Glu-Ser-Leu- Cys-Thr-Glu-Gly-Glu-Asp-Arg-Thr-Gly-Cys-Tyr-Met-Tyr-Ile-Tyr-Ser-Asn-Cys- Pro-Pro-Tyr-Val The calculated molecular weight is 4411.0, which is in agreement with the averaged mass of 4410.2 obtained by fission fragment ionization mass spectrometry. Previously reported values of the native molecular weight, determined by gel filtration, have ranged from 9,000 to 12,000. Thus, the native structure is likely a dimer (or larger aggregate) of identical subunits with the three disulfide bonds present occurring as intrachain links. Secondary structure predictions suggest a helical structure at the amino terminus. A comparison of the Er-1 amino acid sequence with known protein sequences did not reveal any significant similarities. PMID:3142868

  14. Identification and functional characterization of an uncharacterized antimicrobial peptide from a ciliate Paramecium caudatum.

    Science.gov (United States)

    Cui, Pengfei; Dong, Yuan; Li, Zhijian; Zhang, Yubo; Zhang, Shicui

    2016-07-01

    The global ever-growing concerns about multi-drug resistant (MDR) microbes leads to urgent demands for exploration of new antibiotics including antimicrobial peptides (AMPs). Here we demonstrated that a cDNA from Ciliata Paramecium caudatum, designated Pcamp1, coded for a protein with features characteristic of AMPs, which is not homologous to any AMPs currently known. Both the C-terminal 91 amino acid residues of PcAMP1, cPcAMP1, expressed in Escherichia coli and the C-terminal 26 amino acid residues (predicted mature AMP), cPcAMP1/26, synthesized, underwent a coil-to-helix transition in the presence of TFE, SDS or DPC. Functional assays revealed that cPcAMP1 and cPcAMP1/26 were both able to kill Aeromonas hydrophila and Staphylococcus aureus. ELISA showed that cPcAMP1 and cPcAMP1/26 were able to bind to microbe-associated molecular pattern molecules LPS and LTA, which was further corroborated by the observations that cPcAMP1 could deposit onto the bacterial membranes. Importantly, both cPcAMP1 and cPcAMP1/26 were able to induce bacterial membrane permeabilization and depolarization, and to increase intracellular ROS levels. Additionally, cPcAMP1 and cPcAMP1/26 were not cytotoxic to mammalian cells. Taken together, our results show that PcAMP1 is a potential AMP with a membrane selectivity towards bacterial cells, which renders it a promising template for the design of novel peptide antibiotics against MDR microbes. It also shows that use of signal conserved sequence of AMPs can be an effective tool to identify potential AMPs across different animal classes. PMID:26883426

  15. Comparative Proteome Bioinformatics: Identification of Phosphotyrosine Signaling Proteins in the Unicellular Protozoan Ciliate Tetrahymena

    DEFF Research Database (Denmark)

    Gammeltoft, Steen; Christensen, Søren Tvorup; Joachimiak, Marcin;

    2005-01-01

    Tetrahymena, bioinformatics, cilia, evolution, signaling, TtPTK1, PTK, Grb2, SH-PTP 2, Plcy, Src, PTP, PI3K, SH2, SH3, PH......Tetrahymena, bioinformatics, cilia, evolution, signaling, TtPTK1, PTK, Grb2, SH-PTP 2, Plcy, Src, PTP, PI3K, SH2, SH3, PH...

  16. New records of epibiont Ciliates (Ciliophora) from Indian coast with descriptions of six new species

    Digital Repository Service at National Institute of Oceanography (India)

    Chatterjee, T.; Fernandez-Leborans, G.; Ramteke, D.; Ingole, B.S.

    data about the macronucleus. C. nodosa has the lorica with one or more annular ridges, without data about macronucleus, external stalk slender, two zooids per lorica. C. triangula has an external stalk curved, and all the stalk was striated...

  17. Molecular diversity of entodiniomorphid ciliate Troglodytella abrassarti and its coevolution with chimpanzees

    Czech Academy of Sciences Publication Activity Database

    Vallo, Peter; Petrželková, Klára Judita; Profousová, Ilona; Petrášová, J.; Pomajbíková, K.; Leendertz, F.; Hashimoto, C.; Simmons, N.; Babweteera, F.; Machanda, Z.; Piel, A.; Robbins, M. M.; Boesch, Ch.; Sanz, C.; Morgan, D.; Sommer, V.; Furuichi, T.; Fujita, S.; Matsuzawa, T.; Kaur, T.; Huffman, M. A.; Modrý, David

    2012-01-01

    Roč. 148, č. 4 (2012), s. 525-533. ISSN 0002-9483 Institutional support: RVO:68081766 ; RVO:60077344 Keywords : SSU rDNA * ITS * entodiniomorphida * Troglodytellidae * Pan troglodytes Subject RIV: EG - Zoology Impact factor: 2.481, year: 2012

  18. Immunostaining Phospho-epitopes in Ciliated Organs of Whole Mount Zebrafish Embryos.

    Science.gov (United States)

    Rothschild, Sarah C; Francescatto, Ludmila; Tombes, Robert M

    2016-01-01

    The rapid proliferation of cells, the tissue-specific expression of genes and the emergence of signaling networks characterize early embryonic development of all vertebrates. The kinetics and location of signals - even within single cells - in the developing embryo complements the identification of important developmental genes. Immunostaining techniques are described that have been shown to define the kinetics of intracellular and whole animal signals in structures as small as primary cilia. The techniques for fixing, imaging and processing images using a laser-scanning confocal compound microscope can be completed in as few as 36 hr. Zebrafish (Danio rerio) is a desirable organism for investigators who seek to conduct studies in a vertebrate species that is affordable and relevant to human disease. Genetic knockouts or knockdowns must be confirmed by the loss of the actual protein product. Such confirmation of protein loss can be achieved using the techniques described here. Clues into signaling pathways can also be deciphered by using antibodies that are reactive with proteins that have been post-translationally modified by phosphorylation. Preserving and optimizing the phosphorylated state of an epitope is therefore critical to this determination and is accomplished by this protocol. This study describes techniques to fix embryos during the first 72 hr of development and co-localize a variety of relevant epitopes with cilia in the Kupffer's Vesicle (KV), the kidney and the inner ear. These techniques are straightforward, do not require dissection and can be completed in a relatively short period of time. Projecting confocal image stacks into a single image is a useful means of presenting these data. PMID:26967668

  19. Laparoscopic excision of a ciliated hepatic foregut cyst in a child: A case report and review of the literature

    Directory of Open Access Journals (Sweden)

    Nicholas E. Bruns

    2015-12-01

    Conclusion: This case report suggests that laparoscopy may be safe and effective for resection of CHFCs with favorable anatomy such as peripheral location and noninvolvement of key vascular and biliary structures.

  20. The Extracellular Matrix Protein Artichoke Is Required for Integrity of Ciliated Mechanosensory and Chemosensory Organs in Drosophila Embryos

    OpenAIRE

    Andrés, Marta; Turiégano, Enrique; Göpfert, Martin C.; Canal, Inmaculada; Torroja, Laura

    2014-01-01

    Sensory cilia are often encapsulated by an extracellular matrix (ECM). In Caenorhabditis elegans, Drosophila melanogaster, and vertebrates, this ECM is thought to be directly involved in ciliary mechanosensing by coupling external forces to the ciliary membrane. Drosophila mechano- and chemosensory cilia are both associated with an ECM, indicating that the ECM may have additional roles that go beyond mechanosensory cilium function. Here, we identify Artichoke (ATK), an evolutionarily conse...

  1. Pelagic ciliate assemblage of high-altitude lake Atexcac (Puebla, México): Comparison with similar lakes in other regions

    Czech Academy of Sciences Publication Activity Database

    Macek, Miroslav; Lugo, V. A.; Vilaclara, F. G.

    Leiden 093 Backhuys Publishers, 2000 - (Munawar, M.; Lawrence, S.; Munawar, I.; Malley, D.), s. 45-59 Grant ostatní: CONACyT(MX) P220 CCOR880369; EU(XE) MOLAR ENV4-CT95-0007 Keywords : hydrology Subject RIV: EE - Microbiology, Virology

  2. TPP1 is a homologue of ciliate TEBP-β and interacts with POT1 to recruit telomerase

    Science.gov (United States)

    Xin, Huawei; Liu, Dan; Wan, Ma; Safari, Amin; Kim, Hyeung; Sun, Wen; O'Connor, Matthew S.; Songyang, Zhou

    2007-02-01

    Telomere dysfunction may result in chromosomal abnormalities, DNA damage responses, and even cancer. Early studies in lower organisms have helped to establish the crucial role of telomerase and telomeric proteins in maintaining telomere length and protecting telomere ends. In Oxytricha nova, telomere G-overhangs are protected by the TEBP-α/β heterodimer. Human telomeres contain duplex telomeric repeats with 3' single-stranded G-overhangs, and may fold into a t-loop structure that helps to shield them from being recognized as DNA breaks. Additionally, the TEBP-α homologue, POT1, which binds telomeric single-stranded DNA (ssDNA), associates with multiple telomeric proteins (for example, TPP1, TIN2, TRF1, TRF2 and RAP1) to form the six-protein telosome/shelterin and other subcomplexes. These telomeric protein complexes in turn interact with diverse pathways to form the telomere interactome for telomere maintenance. However, the mechanisms by which the POT1-containing telosome communicates with telomerase to regulate telomeres remain to be elucidated. Here we demonstrate that TPP1 is a putative mammalian homologue of TEBP-β and contains a predicted amino-terminal oligonucleotide/oligosaccharide binding (OB) fold. TPP1-POT1 association enhanced POT1 affinity for telomeric ssDNA. In addition, the TPP1 OB fold, as well as POT1-TPP1 binding, seemed critical for POT1-mediated telomere-length control and telomere-end protection in human cells. Disruption of POT1-TPP1 interaction by dominant negative TPP1 expression or RNA interference (RNAi) resulted in telomere-length alteration and DNA damage responses. Furthermore, we offer evidence that TPP1 associates with the telomerase in a TPP1-OB-fold-dependent manner, providing a physical link between telomerase and the telosome/shelterin complex. Our findings highlight the critical role of TPP1 in telomere maintenance, and support a yin-yang model in which TPP1 and POT1 function as a unit to protect human telomeres, by both positively and negatively regulating telomerase access to telomere DNA.

  3. Ciliate food vacuole content and bacterial community composition in the warm-monomictic crater Lake Alchichica, Mexico

    Czech Academy of Sciences Publication Activity Database

    Bautista-Reyes, F.; Macek, Miroslav

    2012-01-01

    Roč. 79, č. 1 (2012), s. 85-97. ISSN 0168-6496 Institutional research plan: CEZ:AV0Z60170517 Keywords : CARD-FISH * selective predation * oxygen gradient Subject RIV: EE - Microbiology, Virology Impact factor: 3.563, year: 2012

  4. Complete sequence of the extrachromosomal rDNA molecule from the ciliate Tetrahymena thermophila strain B1868VII

    DEFF Research Database (Denmark)

    Engberg, J; Nielsen, Henrik

    1990-01-01

    The recent development of rDNA vectors for transformation of Tetrahymena combined with improved microinjection technology should lead to a renewed interest in this organism. In particular, the rDNA itself constitutes an attractive system for biochemical studies. The rDNA is amplified to a level of...

  5. ROLE OF CA2+ AND CAMP IN A CELL SIGNALING PATHWAY FOR RESTING CYST FORMATION OF CILIATED PROTOZOAN COLPODA CUCULLUS

    OpenAIRE

    Matsuoka, Tatsuomi; Kondoh, Asuka; Sabashi, Kunihisa; Nagano, Nobuaki; Akematsu, Takahiko; Kida, Akemi; Iino, Ryota

    2009-01-01

    Resting cyst formation (encystment) of Colpoda cucullus is caused by an increase in an external Ca2+ concentration or overpopulation of Colpoda vegetative cells. The Ca2+-mediated or overpopulation-mediated encystment was suppressed by Ca2+ channel blockers (Cd2+, La3+, Ni2+), Ca2+-chelating reagents (EGTA, BAPTA), calmodulin antagonists (W-7, trifluoperazine), Rp-cAMPS (an cAMP analog antagonist) and 2-deoxyadenosine (a P-site inhibitor of adenylate cyclase). On the other hand, by the additi...

  6. Role of essential lipids in copepod nutrition: no evidence for trophic upgrading of food quality by a marine ciliate

    DEFF Research Database (Denmark)

    Klein Breteler, W.; Koski, Marja; Rampen, S.

    2004-01-01

    -quality Rhodomonas sp. diet. The specific mass of fatty acids in S. sulcatum was much lower than in the Dunaliella sp. diet, However, the fatty acid composition of the protozoan more or less resembled that of the food, lacking long-chain highly unsaturated fatty acids (HUFAs). Sterols only occurred in Dunaliella sp...

  7. CEP164-null cells generated by genome editing show a ciliation defect with intact DNA repair capacity.

    Science.gov (United States)

    Daly, Owen M; Gaboriau, David; Karakaya, Kadin; King, Sinéad; Dantas, Tiago J; Lalor, Pierce; Dockery, Peter; Krämer, Alwin; Morrison, Ciaran G

    2016-05-01

    Primary cilia are microtubule structures that extend from the distal end of the mature, mother centriole. CEP164 is a component of the distal appendages carried by the mother centriole that is required for primary cilium formation. Recent data have implicated CEP164 as a ciliopathy gene and suggest that CEP164 plays some roles in the DNA damage response (DDR). We used reverse genetics to test the role of CEP164 in the DDR. We found that conditional depletion of CEP164 in chicken DT40 cells using an auxin-inducible degron led to no increase in sensitivity to DNA damage induced by ionising or ultraviolet irradiation. Disruption of CEP164 in human retinal pigmented epithelial cells blocked primary cilium formation but did not affect cellular proliferation or cellular responses to ionising or ultraviolet irradiation. Furthermore, we observed no localisation of CEP164 to the nucleus using immunofluorescence microscopy and analysis of multiple tagged forms of CEP164. Our data suggest that CEP164 is not required in the DDR. PMID:26966185

  8. Seasonal dynamics, composition and feeding patterns of ciliate assemblages in oligotrophic lakes covering a wide pH range

    Czech Academy of Sciences Publication Activity Database

    Macek, Miroslav; Callieri, C.; Šimek, Karel; Vázquez, A.L.

    2006-01-01

    Roč. 166, č. 2 (2006), s. 261-287. ISSN 0003-9136 R&D Projects: GA ČR(CZ) GA206/97/0072; GA MŠk(CZ) ME 296; GA MŠk(CZ) OK 118 Grant ostatní: UNAM DGAPA/PAPIIT(MX) IN208502; EC(XE) ENV4-CT95-0007; EC(XE) EVK1-CT-1999-00032; FES UNAM(MX) PAPCA Institutional research plan: CEZ:AV0Z6017912 Keywords : mountain lakes * timberline * acidified lakes * tropical high altitude lake * mixotrophy * oligotrichs * prostomes * gymnosotmes * peritrichs * scuticociliates Subject RIV: EH - Ecology, Behaviour Impact factor: 1.362, year: 2006

  9. Acute effects of heavy metals on the expression of glutathione-related antioxidant genes in the marine ciliate Euplotes crassus

    International Nuclear Information System (INIS)

    Highlights: • Significant higher increases in the relative ROS and total GSH levels were observed after exposure to heavy metals. • Real-time PCR data showed expression levels of GPx and GR mRNA were sensitively modulated within 8 h of exposure to heavy metals. • E. crassus GPx and GR genes may be involved in cellular defense mechanisms against heavy metal-induced oxidative stress. • E. crassus GPx and GR genes will be useful as potential molecular markers for monitoring heavy metal contamination. - Abstract: Euplotes crassus, a single-celled eukaryote, is directly affected by environmental contaminants. Here, exponentially cultured E. crassus were exposed to cadmium, copper, lead, and zinc and then the reactive oxygen species (ROS) and total glutathione (GSH) levels were measured. Subsequently, the transcriptional modulation of glutathione peroxidase (GPx) and glutathione reductase (GR) were estimated by quantitative RT-PCR. After an 8-h exposure, significantly higher increases in the relative ROS and total GSH levels were observed in exposed group, compared to the controls. Real-time PCR data revealed that the expression levels of GPx and GR mRNA were sensitively modulated within 8 h of exposure to all heavy metals. These findings suggest that these genes may be involved in cellular defense mechanisms by modulating their gene expression against heavy metal-induced oxidative stress. Thus, they may be useful as potential molecular biomarkers to assess sediment environments for contaminants

  10. Morphology and systematics of two freshwater urostylid ciliates, with description of a new species (Protista, Ciliophora, Hypotrichia).

    Science.gov (United States)

    Pan, Xuming; Fan, Yangbo; Gao, Feng; Qiu, Zijian; Al-Farraj, Saleh A; Warren, Alan; Shao, Chen

    2016-02-01

    The morphology of two freshwater urostylid species, Neourostylopsis flava spec. nov. and Pseudourostyla subtropicaChen et al., 2014, isolated from freshwater ponds in northern and southern China, respectively, was investigated following examination of specimens in vivo and following protargol staining. Neourostylopsis flava spec. nov. is distinguished from its congeners by the following characteristics: body size 150-220 × 50-75 μm in vivo; yellow in colour; bright yellow to yellow-brownish spherical cortical granules densely arranged along marginal cirral rows and in irregular short rows on dorsal side; adoral zone with 40-55 membranelles; six to eight frontal, three or four buccal, two pretransverse ventral and seven to nine transverse cirri; 27-40 midventral pairs extending to about anterior 55% of cell; four or five left and four right marginal rows; freshwater habitat. A redescription of a freshwater population of P. subtropica is also provided. Phylogenetic analyses based on small subunit ribosomal DNA sequences shows that P. subtropica and N. flava spec. nov. group with their congeners and both Neourostylopsis and Pseudourostyla are monophyletic. PMID:26752607

  11. A new entodiniomorphid ciliate, Troglocorys cava n. g., n. sp., from the wild eastern chimpanzee (Pan troglodytes schweinfurthii) from Uganda

    Czech Academy of Sciences Publication Activity Database

    Tokiwa, T.; Modrý, David; Ito, A.; Pomajbíková, K.; Petrželková, Klára Judita; Imai, S.

    2010-01-01

    Roč. 57, č. 2 (2010), s. 115-120. ISSN 1066-5234 R&D Projects: GA ČR GA524/06/0264; GA ČR GA206/09/0927 Institutional research plan: CEZ:AV0Z60930519; CEZ:AV0Z60220518 Keywords : Infraciliature * Kalinzu Forest * protozoa * scanning electron microscopy Subject RIV: EG - Zoology Impact factor: 2.397, year: 2010

  12. Cold-shock based method to induce the discharge of extrusomes in ciliated protists and its efficiency.

    Science.gov (United States)

    Buonanno, Federico; Ortenzi, Claudio

    2016-05-01

    Extrusomes are ejectable organelles in protists, which are able to discharge their contents to the outside of the cell in response to external stimuli. It is known that a large number of extrusomes functions as organelles for offense or defense in predator-prey interactions among protists and/or microinvertebrates. To date, the main approach to study these interactions was to compare artificially-induced extrusome-deficient cells with normal cells as prey for predators. Commonly applied methods to obtain extrusome-deficient cells use external chemicals, which could alter the viability of cells and/or interfere with the subsequent analysis of the substances (secondary metabolites) contained in the extrusomes. The cold-shock based method here presented has proven to be effective to remove different kinds of extrusomes from several protist species without harming the treated cells and without adding external reagents. This method could be also useful to simplify the related analysis of the chemical nature of the secreted secondary metabolites. PMID:26375274

  13. Triplex PCR detection of Cladosporium cucumerinum,Fusarium oxysporum f.sp.niveum and Mycosphaerella melonis in infected plant tissues%瓜黑星病菌、枯萎病菌和蔓枯病菌的三重PCR检测

    Institute of Scientific and Technical Information of China (English)

    高永洋; 王楠; 高观朋; 王伟

    2010-01-01

    通过测定黄瓜黑星病菌(Cladosporium cucumerinum)rDNA的ITS序列,比对近缘种及瓜类几种重要病原菌的ITS序列,设计出特异性引物HX-1/HX-2,经过对引物HX-1/HX-2 PCR条件的优化,可以扩增出1条190 bp的黄瓜黑星病菌特异性DNA条带,灵敏度达到1 pg/μL.进一步将引物HX-1/HX-2和瓜类枯萎病菌、瓜类蔓枯病菌特异检测引物Fn-1/Fn-2、Mn-1/Mn-2组合,建立三重PCR体系,可一次检测出瓜类黑星病菌、瓜类枯萎病菌、瓜类蔓枯病菌3种瓜类植物重要的病原菌.建立了可以应用于田间瓜类黑星病菌PCR检测技术和瓜类主要病害三重PCR检测技术,对瓜类病害的诊断和防治具有重要的指导作用.

  14. Increased fucosyl glycoconjugate by Mycoplasma hyopneumoniae enhances adherences of Pasteurella multocida type A in the ciliated epithelial cells of the respiratory tract

    OpenAIRE

    Park, Changhoon; Jeong, Jiwoon; KANG, Ikjae; Choi, Kyuhyung; Park, Su-Jin; Chae, Chanhee

    2016-01-01

    Background The objective of this study was to elucidate the pathogenic mechanisms of how Mycoplasma hyopneumoniae enhances secondary Pasteurella multocida type A infection which leads to porcine enzootic pneumonia in infected pigs. Sixteen pigs were experimentally infected with M. hyopneumoniae and then euthanized at 7, 14, 21 and 28 days post inoculation. In situ hybridization for M. hyopneumoniae DNA and Ulex europaeus agglutinin-I (UEA-I) lectin histochemistry for fucosyl glycoconjugate, w...

  15. Investigations of the effects of UV and X-ray radiation and the repair of radiation damage in the ciliate Stylonychia mytilus

    International Nuclear Information System (INIS)

    Using the example of Stylomychia mytilus, the effects of UV-radiation and ionizing X-ray radiation are compared. The effects on cell division and on the repair of radiation damage in DNA are compared. Sensitivity to UV radiation differs between the stages of the cell cycle while the effects of X-ray radiation are independent of phase. There is no difference in repair processes. (AJ) 891 AJ/AJ 892 MKO

  16. 纤毛虫与养殖刺参的"腐皮综合症"%Ciliates and “cankered cutis disease” of Apostichopus japonicus

    Institute of Scientific and Technical Information of China (English)

    刘晓云; 范瑞青; 谭金山; 高澜

    2005-01-01

    @@ 近年伴随刺参(Apostichopus japonicus)养殖业的快速发展,病害问题日趋突出.2004年山东沿海多处养殖海参发病,有些地方海参的死亡率高达50%以上.许多专家对刺参的病因和病原进行了研究,将发生于2004年春季的养殖刺参爆发性疾病称之为"腐皮综合症"或"化皮病",并定性其为细菌性疾病.

  17. Digestion, ruminal fermentation, ciliate protozoal populations, and milk production from dairy cows fed cinnamaldehyde, quebracho condensed tannin, or Yucca schidigera saponin extracts.

    Science.gov (United States)

    Benchaar, C; McAllister, T A; Chouinard, P Y

    2008-12-01

    Four ruminally cannulated lactating cows were used in a 4 x 4 Latin square design (28-d periods) to determine the effects of cinnamaldehyde (CIN; 1 g/cow per day), condensed tannins from quebracho trees (QCT, containing 70% tannins, 150 g/cow per day), and saponins from Yucca schidigera extract (YSE, containing 10% saponins; 60 g/cow per day) on digestion, ruminal fermentation characteristics, protozoal populations, and milk production. Intake of dry matter was not affected by the addition of CIN or QCT, but cows fed YSE had lesser intake than cows fed the control diet (21.8 vs. 23.2 kg/d). Apparent total-tract digestibilities of dry matter, organic matter, crude protein, neutral detergent fiber, and acid detergent fiber were unaffected by dietary treatments. Supplementation with CIN, QTE, or YSE did not affect in situ ruminal degradation of soybean meal, grass silage, or corn grain. Ruminal pH (6.67), total volatile fatty acid concentration (135 mM), and molar proportions (mol/100 mol of total volatile fatty acid) of acetate (65.0), propionate (19.6), and butyrate (11.2) were similar among treatments. Ruminal NH(3)-N concentration was not changed by the addition of CIN and YSE, but tended to decrease in cows fed QCT compared with cows fed the control diet (132 vs. 160 mg/L). Total numbers of ruminal protozoa were not changed by adding CIN, QCT, or YSE in the diet (5.85 log(10)/mL). However, the number of Isotricha was greater in ruminal fluid of cows fed CIN than in ruminal fluid of cows fed the control diet (4.46 vs. 4.23 log(10)/mL). Milk production (33.1 kg/d), milk fat (4.3%), and milk protein (3.5%) remained unchanged between dietary treatments. Results of this study show that under our experimental conditions, supplementing dairy cow diets with CIN, QCT, or YSE had limited effects on digestion, ruminal fermentation characteristics, and protozoal populations. The lack of effects observed in this study suggests that these antimicrobials require administration at greater doses to favorably alter rumen microbial fermentation. PMID:19038952

  18. 肺炎患者痰中检出纤毛虫1例%Ciliated protozoan in sputum of a pneumonia patient

    Institute of Scientific and Technical Information of China (English)

    陈志敏

    2007-01-01

    患者,女性,56岁,初中文化,绍兴市越城区人,现已退休,养鸟史2年余,无疫水接触史。2006年12月17日,因不明原因发热,来院就诊。主诉:畏寒,少量咳嗽,无痰。查体:体温高达40℃;血常规检查:白细胞总数7.9×109/L,中性粒细胞78.9%。血液沉降率9mm/h;血压120/90mmHg,

  19. Morphology, ontogenetic features and SSU rRNA gene-based phylogeny of a soil ciliate, Bistichella cystiformans spec. nov. (Protista, Ciliophora, Stichotrichia).

    Science.gov (United States)

    Fan, Yangbo; Hu, Xiaozhong; Gao, Feng; Al-Farraj, Saleh A; Al-Rasheid, Khaled A S

    2014-12-01

    The morphology, ontogeny and SSU rRNA gene-based phylogeny of Bistichella cystiformans spec. nov., isolated from the slightly saline soil of a mangrove wetland in Zhanjiang, southern China, were investigated. The novel species was characterized by having five to eight buccal cirri arranged in a row, three to five transverse cirri, four macronuclear nodules aligned, and 17-32 and 20-34 cirri in frontoventral rows V and VI, respectively, both extending to the transverse cirri. The main ontogenetic features of the novel species were as follows: (1) the parental adoral zone of the membranelles is completely inherited by the proter; (2) the frontoventral and transverse cirri are formed in a six-anlagen mode; (3) basically, the frontal-ventral-transverse cirral anlagen II-V generate one transverse cirrus each at their posterior ends, while anlage VI provides no transverse cirrus; (4) both marginal rows and dorsal kineties develop intrakinetally, no dorsal kinety fragment is formed; and (5) the macronuclear nodules fuse into a single mass at the middle stage. Phylogenetic analyses based on the SSU rRNA gene showed that the novel species groups with the clade containing Bistichella variabilis, Parabistichella variabilis, Uroleptoides magnigranulosus and two species of the genus Orthoamphisiella. Given present knowledge, it was considered to be still too early to come to a final conclusion regarding the familial classification of the genus Bistichella; further investigations of key taxa with additional molecular markers are required. PMID:25242538

  20. Biodiversity and molecular phylogeny of Australian Clevelandella species (Class Armophorea, Order Clevelandellida, Family Clevelandellidae), intestinal endosymbiotic ciliates in the wood-feeding roach Panesthia cribrata Saussure, 1864.

    Science.gov (United States)

    Lynn, Denis H; Wright, André-Denis G

    2013-01-01

    There are over 100 species in the Order Clevelandellida distributed in many hosts. The majority is assigned to one of the five families, the Nyctotheridae. Our knowledge of clevelandellid genetic diversity is limited to species of Nyctotherus and Nyctotheroides. To increase our understanding of clevelandellid genetic diversity, species were isolated from intestines of the Australian wood-feeding roach Panesthia cribrata Saussure, 1864 from August to October, 2008. Four morphospecies, similar to those reported in Java and Japan by Kidder [Parasitologica, 29:163-205], were identified: Clevelandella constricta, Clevelandella nipponensis, Clevelandella parapanesthiae, and Clevelandella panesthiae. Small subunit rRNA gene sequences assigned all species to a "family" clade that was sister to the clade of species assigned to the Family Nyctotheridae in the Order Clevelandellida. Genetics and morphology were consistent for the first three Clevelandella species, but isolates assigned to C. panesthiae were assignable to three different genotypes, suggesting that this may be a cryptic species complex. PMID:23590673

  1. Mechanism of disease suppression of Fusarium wilt of watermelon by cover crop green manures

    Science.gov (United States)

    A fall planted Vicia villosa cover crop incorporated in spring as a green manure can suppress Fusarium wilt [Fusarium oxysporum f. sp. niveum (FON)] of watermelon in Maryland and Delaware. Experiments were conducted to determine whether the mechanism of this suppression was general or specific, and ...

  2. Fusarium wilt in seedless watermelons

    Science.gov (United States)

    Fusarium wilt of watermelon [Citrullus lanatus (Thunb.) Matsum. & Nakai], caused by Fusarium oxysporum f. sp. niveum (E.F. Sm.) Snyd. & Hans., was first reported in the United States in 1894. Historically, Fusarium wilt has been the greatest yield-limiting disease of watermelon worldwide. The stat...

  3. A mechanism of transmission and factors affecting coral susceptibility to Halofolliculina sp. infection

    Science.gov (United States)

    Rodríguez, S.; Cróquer, A.; Guzmán, H. M.; Bastidas, C.

    2009-03-01

    Anecdotal evidence collected since 2004 suggests that infections caused by ciliates in the genus Halofolliculina may be related to coral mortality in more than 25 scleractinian species in the Caribbean. However, the relationship between the presence of ciliates and coral mortality has not yet been firmly established. Field and laboratory manipulations were used to test if ciliate infections harm corals, if ciliates are able to infect healthy colonies, and if coral susceptibility to ciliate infection depends on temperature, depth, distance to an infected colony, and the presence of injuries. Ciliate infections were always characterized by a visually detectable front of ciliates located on recently exposed coral skeletons. These infections altered the normal structure of the colony by causing tissue mortality (0.8 ± 0.95 cm month-1, mean ± SD) and by delaying or preventing recovery from injuries. Under laboratory conditions, ciliates transmitted directly and horizontally from infected to healthy hosts, and coral susceptibility to ciliate infections increased with the presence of injuries. After invasion, the ciliate population grew, rapidly and after 8 d, produced tissue mortality on 32% of newly infected hosts. Thus, our results support the existence of a new Caribbean coral syndrome that is associated with tissue mortality, is infectious, and transmits directly and horizontally. Even though the role of ciliates in the development of lesions on coral tissues remains unclear, their presence is by far the most conspicuous sign of this syndrome; thus, we propose to name this condition Caribbean ciliate infection (CCI).

  4. Rootstock Potential of Turkish Lagenaria siceraria Germplasm for Watermelon: Plant Growth, Graft Compatibility, and Resistance to Fusarium

    OpenAIRE

    YETİŞİR, Halit; Şener KURT; Sari, Nebahat; TOK, Fatih M.

    2007-01-01

    The rootstock potential of Turkish Lagenaria siceraria germplasm for watermelon was evaluated. Among 210 accessions, 72 genotypes were selected based on morphological characteristics. Two commercial hybrid rootstocks were also used for comparison. Crimson Tide watermelon cultivar was used as a scion. Emergence rate, hypocotyl morphology, survival rate, and resistance to Fusarium oxysporum f. sp. niveum (FON) were investigated. Grafted plants were grown for 3 weeks in order to investigate the ...

  5. Description of two marine amphisiellid ciliates, Amphisiella milnei (Kahl, 1932) Horváth, 1950 and A. sinica sp. nov. (Ciliophora: Hypotrichia), with notes on their ontogenesis and SSU rDNA-based phylogeny.

    Science.gov (United States)

    Li, Liqiong; Zhao, Xiaolu; Ji, Daode; Hu, Xiaozhong; Al-Rasheid, Khaled A S; Al-Farraj, Saleh A; Song, Weibo

    2016-06-01

    The morphology and taxonomy of two marine Amphisiella species, isolated from mariculture waters in northern China, were investigated using standard techniques. One species corresponds well with the original description of the poorly known Amphisiella milnei (Kahl, 1932) Horváth, 1950 by remarkable characteristics, inter alia, (i) the additional cirri between the left frontal cirrus and the buccal cirrus, and (ii) ring-shaped structure in the anterior and posterior body portion (posterior one sometimes lacking). The detailed description of the cirral pattern and an informative ontogenetic stage first reveal that the additional cirri, which are uniformly absent in all congeners, originate from the frontal-ventral transverse cirral anlage I. The other species represents a new species of Amphisiella, A. sinica sp. nov. It is distinguished from its most closely related congener A. annulata (Kahl, 1928) Borror, 1972 by having numerous ring-shaped structures with a shallow brim more or less densely centralised at both ends of the body. Brief notes on the cell division and phylogenetic analyses based on small subunit (SSU) rRNA gene sequence for both organisms are also supplied in order to get further understanding of their systematic positions. The molecular information indicates that both organisms belong to two separate clades and confirms that the genus Amphisiella might be polyphyletic. PMID:27156119

  6. Morphology and small-subunit rRNA gene sequences of two novel marine ciliates, Metanophrys orientalis spec. nov. and Uronemella sinensis spec. nov. (Protista, Ciliophora, Scuticociliatia), with an improved diagnosis of the genus Uronemella.

    Science.gov (United States)

    Pan, Xuming; Zhu, Mingzhuang; Ma, Honggang; Al-Rasheid, Khaled A S; Hu, Xiaozhong

    2013-09-01

    The morphology and infraciliature of two novel marine scuticociliates, Metanophrys orientalis spec. nov. and Uronemella sinensis spec. nov., collected from sandy beaches at Qingdao, China, were investigated using live observation and protargol-staining methods. Metanophrys orientalis spec. nov. is distinguished by the following characteristics: marine habitat and a slender to elongate oval body with pointed anterior end and rounded caudal end, in vivo about 25-50 µm long; buccal field about a quarter to a third of body length; nine or ten somatic kineties with dikinetids approximately in anterior half of body, monokinetids in posterior half; membranelles 1 and 2 almost equal in length and composed of two and three longitudinal rows of kinetids respectively; paroral membrane with zigzag structure extending anteriorly to middle portion of membranelle 2; contractile vacuole pore located at posterior end of somatic kinety 1. The genus Uronemella is redefined as follows: marine form with an elongate-elliptical or inverted pear-shaped body; apical plate conspicuous; buccal field about two-thirds of body length, cytostome subequatorially located; oral apparatus Uronema-like; somatic kineties comprising a mixture of dikinetids and monokinetids. Uronemella sinensis spec. nov. is recognized by having an elongate-elliptical body with truncated apical frontal plate, size in vivo about 25-35 × 15-20 µm, nine or ten somatic kineties, membranelle 1 consisting of two or three basal bodies, contractile vacuole pore at posterior end of somatic kinety 1. This study also compared the small-subunit rRNA gene sequences of these two species with other closely related species to show the sequence divergence, which ranged from 3.53 to 9.60%. Phylogenetic analyses support the contention that the genus Uronemella is monophyletic, while Metanophrys is non-monophyletic. PMID:23859947

  7. Exploiting Oxytricha trifallax nanochromosomes to screen for non-coding RNA genes

    OpenAIRE

    Jung, Seolkyoung; Swart, Estienne C.; Minx, Patrick J.; Magrini, Vincent; Mardis, Elaine R.; Landweber, Laura F.; Eddy, Sean R.

    2011-01-01

    We took advantage of the unusual genomic organization of the ciliate Oxytricha trifallax to screen for eukaryotic non-coding RNA (ncRNA) genes. Ciliates have two types of nuclei: a germ line micronucleus that is usually transcriptionally inactive, and a somatic macronucleus that contains a reduced, fragmented and rearranged genome that expresses all genes required for growth and asexual reproduction. In some ciliates including Oxytricha, the macronuclear genome is particularly extreme, consis...

  8. The influence of zooplankton enrichment on the microbial loop in a shallow, eutrophic lake.

    Science.gov (United States)

    Zingel, Priit; Agasild, Helen; Karus, Katrit; Kangro, Kersti; Tammert, Helen; Tõnno, Ilmar; Feldmann, Tõnu; Nõges, Tiina

    2016-02-01

    With increasing primary productivity, ciliates may become the most important members of the microbial loop and form a central linkage in the transformation of microbial production to upper trophic levels. How metazooplankters, especially copepods, regulate ciliate community structure in shallow eutrophic waters is not completely clear. We carried out mesocosm experiments with different cyclopoid copepod enrichments in a shallow eutrophic lake to examine the responses of ciliate community structure and abundance to changes in cyclopoid copepod biomass and to detect any cascading effects on bacterioplankton and edible phytoplankton. Our results indicate that an increase in copepod zooplankton biomass favours the development of small-sized bacterivorous ciliates. This effect is unleashed by the decline of predaceous ciliate abundance, which would otherwise graze effectively on the small-sized ciliates. The inverse relationship between crustacean zooplankton and large predaceous ciliates is an important feature adjusting not only the structure of the ciliate community but also the energy transfer between meta- and protozooplankton. Still we could not detect any cascading effects on bacterio- or phytoplankton that would be caused by the structural changes in the ciliate community. PMID:26555735

  9. Biological and chemical data determined in mesocosm experiments by Dauphin Island Sea Lab in June and August of 2011 (NODC Accession 0118680)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Abundances of viruses, prokaryotes, diatoms, dinoflagellates, ciliates and heterotrophic nanoflagellates were determined over time in mesocosm experiments measuring...

  10. Acquired phototrophy in Mesodinium and Dinophysis – A review of cellular organization, prey selectivity, nutrient uptake and bioenergetics

    DEFF Research Database (Denmark)

    Hansen, Per Juel; Nielsen, Lasse Tor; Johnson, Matthew; Berge, Terje; Flynn, Kevin J.

    2013-01-01

    chloroplasts may be retained, and the host ciliate has considerable control over the acquired chloroplasts; Mesodinium rubrum is capable of dividing its acquired chloroplasts and can also photoacclimate. In Dinophysis spp., the contents of ciliate prey are sucked out, but only the chloroplasts are retained...

  11. Escape response of planktonic protists to fluid mechanical signals

    DEFF Research Database (Denmark)

    Jakobsen, Hans Henrik

    2001-01-01

    The escape response to fluid mechanical signals was examined in 6 protists, 4 ciliates and 2 dinoflagellates. When exposed to a siphon flow. 3 species of ciliates, Balanion comatum, Strobilidium sp., and Mesodinium pulex, responded with escape jumps. The threshold deformation rates required to...

  12. Štetočinje i zaštita biljaka u rasadniku “Podbadanj” od 1993. do 2007. godine

    OpenAIRE

    Glavaš, Milan; Glavaš, Silvana; Budinčšak, Mario; Vukadin, Andrija

    2009-01-01

    U Crikvenici je prije 100 godina osnovan šumski rasadnik “Podbadanj” i jedini je u Hrvatskoj s tako dugom proizvodnjom sadnica. Uprava šuma Podružnica Senj i šumarija Crikvenica je 2008. svečano obilježila njegovu 100 godišnjicu. U svezi s tim, na ovom mjestu prikazuje se zaštitarska komponenta u rasad niku “Podbadanj” za razdoblje 1993. do 2007. godine. U navedenom razdoblju na sadnicama su utvrđene štetne gljive:Fusarium oxysporum, Lephodermim seditiosum, Cyclaneusma niveum, Phomitops...

  13. Stimulation of Armillaria rhizomorph growth by oak root fungi

    Directory of Open Access Journals (Sweden)

    Hanna Kwaśna

    2014-08-01

    Full Text Available Thirty one different genera of fungi were isolated from the wood of roots of 5O·year·old oak (Quercus robur. The most frequently isolated fungi were: Mycelium radicis atrovirens alpha (MRAA, Clonostachys sp. and Penicillium daleae, Beauveria bassiana, Clonostachys sp., Cryplosporiopsis rodicicolo, Geotrichum candidum, Mortierella vinacea, MRAA, P. daleae, P. janczewskii P. spinulosum, Sporothrix schenckii and Tolypocladium niveum significantly enhanced Armillaria mellea rhizomorph initiation and growth from oak branch segments in vitro. The biggest stimulation effect was noticed when the dematiaceous hyphomycetes, e.g. MRAA, P. dimorphospora and S. schenckii were studied.

  14. Mass entrapment and lysis of Mesodinium rubrum cells in mucus threads observed in cultures with Dinophysis

    DEFF Research Database (Denmark)

    Ojamäe, Karin; Hansen, Per Juel; Lips, Inga

    2016-01-01

    The entrapment and death of the ciliate Mesodinium rubrum in the mucus threads in cultures with Dinophysis is described and quantified. Feeding experiments with different concentrations and predator–prey ratios of Dinophysis acuta, Dinophysis acuminata and M. rubrum to study the motility loss and...... aggregate formation of the ciliates and the feeding behaviour of Dinophysis were carried out. In cultures of either Dinophysis species, the ciliates became entrapped in the mucus, which led to the formation of immobile aggregates of M. rubrum and subsequent cell lysis. The proportion of entrapped ciliates...... was influenced by the concentration of Dinophysis and the ratio of predator and prey in the cultures. At high cell concentrations of prey (136 cells mL−1) and predator (100 cells mL−1), a maximum of 17% of M. rubrum cells became immobile and went through cell lysis. Ciliates were observed trapped in...

  15. Beneficial insects attracted to native flowering buckwheats (Eriogonum Michx) in central Washington.

    Science.gov (United States)

    James, David G; Seymour, Lorraine; Lauby, Gerry; Buckley, Katie

    2014-08-01

    Native plant and beneficial insect associations are relatively unstudied yet are important in native habitat restoration programs aimed at improving conservation biological control in perennial crops such as wine grapes. Beneficial insects (predators, parasitoids, pollinators) attracted to 10 species of flowering native wild buckwheat (Eriogonum spp.) in central Washington were identified and counted on transparent sticky traps. Combining all categories of beneficial insects, the mean number per trap ranged from 48.5 (Eriogonum umbellatum) to 167.7 (Eriogonum elatum). Three Eriogonum spp. (E. elatum, Eriogonum compositum, and Eriogonum niveum) attracted significantly more beneficial insects than the lowest-ranked species. E. niveum attracted greatest numbers of bees and parasitic wasps, and E. elatum was highly attractive to predatory true bugs and beneficial flies. Blooming periods of Eriogonum spp. extended from mid April to the end of September. This study demonstrates the attraction of beneficial insects to native flowering buckwheats and suggests their potential as a component of habitat restoration strategies to improve and sustain conservation biological control in Washington viticulture. PMID:24960157

  16. Protozoários ciliados do rúmen de bovinos e bubalinos alimentados com dietas suplementadas com monensina ou própolis Ruminal ciliate protozoa of cattle and buffalo fed on diet supplemented with monensin or extracts from propolis

    OpenAIRE

    Thaís Barros Ríspoli; Isabella Lopes Rodrigues; Rafael Gioia Martins Neto; Ricardo Kazama; Odimari Pricila Pires Prado; Lúcia Maria Zeoula; Pedro Braga Arcuri

    2009-01-01

    O objetivo deste trabalho foi avaliar o efeito de dietas suplementadas com monensina ou produtos à base de própolis, nas populações de protozoários ciliados no rúmen de bovinos (Bos taurus) e bubalinos (Bubalus bubalis). Quatro bovinos da raça Holandesa e quatro búfalos da raça Murrah adultos, fistulados no rúmen, foram distribuídos em delineamento quadrado latino (4x4). A dieta constituiu-se de 50% de silagem de milho e 50% de concentrado à base de milho em grãos e farelo de soja, com adição...

  17. Fontes de lipídeos e monensina na alimentação de novilhos Nelore e sua relação com a população de protozoários ciliados do rúmen Effects of feeding monensin and different sources of fat on the ruminal population of ciliate protozoa in Nellore steers

    OpenAIRE

    Amaury Camilo Valinote; José Carlos Machado Nogueira Filho; Paulo Roberto Leme; Saulo da Luz e Silva; José Aparecido Cunha

    2005-01-01

    Quatro novilhos Nelore, fistulados e canulados no rúmen, foram distribuídos em um delineamento quadrado latino 4 x 4, para avaliar o caroço de algodão e o sal de cálcio de ácidos graxos como fontes de gordura assim como o efeito da monensina em dietas com caroço de algodão, sobre a população de protozoários ciliados e o pH do rúmen. Os tratamentos experimentais foram: dieta controle (CTRL), dieta com sal de cálcio de ácidos graxos (SC), dieta com caroço de algodão (CA) e dieta com caroço de a...

  18. Tumour-like anomaly of copepods-an evaluation of the possible causes in Indian marine waters.

    Science.gov (United States)

    Jagadeesan, L; Jyothibabu, R

    2016-04-01

    Globally, tumour-like anomalies (TLA) in copepods and the critical assessment of their possible causes are rare. The exact causative factor and ecological consequences of TLA in copepods are still unclear and there is no quantitative data available so far to prove conclusively the mechanism involved in developing TLA in copepods. TLA in copepods are considered as a potential threat to the well-being of the aquatic food web, which prompted us to assess these abnormalities in Indian marine waters and assess the possible etiological agents. We carried out a focused study on copepods collected from 10 estuarine inlets and five coastal waters of India using a FlowCAM, advanced microscopes and laboratory-incubated observations. The analysis confirmed the presence of TLA in copepods with varying percentage of incidence in different environments. TLA was recorded in 24 species of copepods, which constituted ~1-15 % of the community in different environments. TLA was encountered more frequently in dominant copepods and exhibited diverse morphology; ~60 % was round, dark and granular, whereas ~20 % was round/oval, transparent and non-granular. TLA was mostly found in the dorsal and lateral regions of the prosome of copepods. The three suggested reasons/assumptions about the causes of TLA such as ecto-parasitism (Ellobiopsis infection), endo-parasitism (Blastodinium infection) and epibiont infections (Zoothamnium and Acineta) were assessed in the present study. We did find infections of endo-parasite Blastodinium, ecto-parasite Ellobiopsis and epibiont Zoothamnium and Acineta in copepods, but these infectious percentages were found <1.5 % to the total density and most of them are species specific. Detailed microscopical observations of the samples collected and the results of the incubation experiments of infected copepods revealed that ecto-parasitism, endo-parasitism and epibiont infections have less relevance to the formation of TLA in copepods. On the other hand

  19. Intersite epibiosis characterization on dominant mangrove crustacean species from Malaysia

    NARCIS (Netherlands)

    Fernandez-Leborans, G.; Hanamura, Y.; Siow, R.; Chee, P.-E.

    2009-01-01

    Epibiosis was studied in dominant mangrove crustacean species in several areas in Malaysia. The observed basibionts were the crustaceans Mesopodopsis orientalis, Acetes japonicus, Acetes sibogae, Acetes indicus and Fenneropenaeus merguiensis and the epibionts found were the protozoan ciliates Acinet

  20. Effect of heterotrophic versus autotrophic food on feeding and reproduction of the calanoid copepod Acartia tonsa : relationship with prey fatty acid composition

    DEFF Research Database (Denmark)

    Broglio, E.; Jonasdottir, Sigrun; Calbet, A.; Jakobsen, Hans Henrik; Saiz, E.

    2003-01-01

    ) and ingestion rates, or as the quotient: EPR/ingestion rate. The diets, offered in monoculture, were the heterotrophic ciliates Strombidium sulcatum or Mesodinium pulex, the heterotrophic dinoflagellate Gymnodinium dominans, the autotrophic cryptophyte Rhodomonas salina and the autotrophic...

  1. Non-invasive sources of cells with primary cilia from pediatric and adult patients

    NARCIS (Netherlands)

    Ajzenberg, H.; Slaats, G.G.; Stokman, M.F.; Arts, H.H.; Logister, I.; Kroes, H.Y.; Renkema, K.Y.; Haelst, M.M. van; Terhal, P.A.; Rooij, I.A.L.M. van; Keijzer-Veen, M.G.; Knoers, N.V.; Lilien, M.R.; Jewett, M.A.; Giles, R.H.

    2015-01-01

    BACKGROUND: Ciliopathies give rise to a multitude of organ-specific pathologies; obtaining relevant primary patient material is useful for both diagnostics and research. However, acquisition of primary ciliated cells from patients, particularly pediatric patients, presents multiple difficulties. Bio

  2. Role of food uptake for photosynthesis, growth and survival of the mixotrophic dinoflagellate Dinophysis acuminata

    DEFF Research Database (Denmark)

    Riisgaard, Karen; Hansen, Per Juel

    2009-01-01

    Dinophysis acuminata is a mixotrophic dinoflagellate frequently causing diarrhetic shellfish poisoning. D. acuminata was isolated from Danish coastal waters and cultivated using the mixotrophic ciliate Mesodinium rubrum as prey. The roles of food uptake and photosynthesis for the growth and...

  3. Studies on the associates and parasites of zooplankton from southwest and southeast coasts of India

    Digital Repository Service at National Institute of Oceanography (India)

    Santhakumari, V.

    Associates and parasites of zooplankton from southwest and southeast coasts of India were studied. Among the epizoic forms two species of ciliates infesting copepods were new records from Indian waters. Eight species of suctorians were found epizoic...

  4. Estudios histológico e histoquímico del sistema digestivo de la almeja catarina Argopecten ventricosus (Sowerby, 1842)

    OpenAIRE

    Cáceres, C.; Alarcón, F.J.

    2002-01-01

    Histological and histochemical studies on the digestive system of Argopecten ventricosus (Sowerby, 1842) was carried out. Lips show a ciliated columnar epithelium with glycoproteins and acid and alkaline phosphatases, and α-D glucosidase activity. Esophagus and lips epitheliums are similar. Acid and alkaline phosphatases, α-D glucosidase and leucil aminopeptidase activities were detected. The epithelium of the stomach is ciliated and contains glands which secrete glycoproteins. Acid and alkal...

  5. Serous adenocarcinoma of the sigmoid mesentery arising in cystic endosalpingiosis

    OpenAIRE

    McCoubrey, A.; Houghton, O; McCallion, K; McCluggage, W G

    2005-01-01

    This case report describes a Mullerian serous adenocarcinoma arising within a multoloculated cyst lined by ciliated serous-type epithelium located in the sigmoid mesentery. Twenty years previously the patient underwent a hysterectomy, bilateral salpingo-oophorectomy, and omentectomy. The ovaries contained bilateral serous cystadenofibromas, and multiple cysts lined by ciliated serous-type epithelium were present in the omentum. The resection specimen 20 years later contained a 14 cm multilocu...

  6. Utilisation des protozoaires ciliés (Paramecium africanum, Colpidium uncinatum, Neobursaridium gigas) pour l'épuration bactériologique des eaux polluées en microcosme

    OpenAIRE

    Nguedji, JBT.; Zébazé, SH.; Kemka, N.; Foto, SM.; Njiné, T.; Nola, M.; Bouetou, TB.

    2003-01-01

    An Microcosm Use of Ciliate Protozoa (Paramecium africanum, Colpidium uncinatum, Neobursaridium gigas) for Bacterial Purification of Polluted Water. Tests on the grazing of ciliated protozoa Paramecium africanum, Colpidium uncinatum and Neobursaridium gigas on the bacteria Escherichia coli and Staphylococcus sp. were carried out in an microcosm aquatic environment. These tests aimed at assessment of the role of these predators protozoa in the bacterial purification of polluted water. The evol...

  7. Tolerance of sewage treatment plant microorganisms to mosquitocides.

    Science.gov (United States)

    Tietze, N S; Olson, M A; Hester, P G; Moore, J J

    1993-12-01

    Beneficial protozoa and rotifers collected from a wastewater treatment plant in Panama City, FL, were tested for tolerance to 11 commonly used mosquito larvicides and adulticides in the laboratory. The acute effects were assessed using selected concentrations of the adulticides fenthion, malathion, naled, permethrin, and resmethrin; and the larvicides Bacillus thuringiensis israelensis, Bacillus sphaericus, diflubenzuron, larviciding oil, methoprene, and temephos for the following microorganism taxa: ameoboids, flagellates, free-swimming ciliates, stalked ciliates, and rotifers. PMID:8126488

  8. RNA-directed epigenetic regulations of DNA rearrangements

    OpenAIRE

    Mochizuki, Kazufumi

    2010-01-01

    Ciliated protozoa undergo extensive DNA rearrangements, including DNA elimination, chromosome breakage and DNA descrambling, when the germline micronucleus produces the new macronucleus during sexual reproduction. It has long been known that many of these events are epigenetically controlled by DNA sequences of the parental macronuclear genome. Recent studies in some model ciliates have revealed that these epigenetic regulations are mediated by non-coding RNAs. DNA elimination in Paramecium a...

  9. Avian Influenza Virus Glycoproteins Restrict Virus Replication and Spread through Human Airway Epithelium at Temperatures of the Proximal Airways

    OpenAIRE

    Scull, Margaret A.; Gillim-Ross, Laura; Santos, Celia; Roberts, Kim L.; Bordonali, Elena; Subbarao, Kanta; Barclay, Wendy S.; Pickles, Raymond J.

    2009-01-01

    Transmission of avian influenza viruses from bird to human is a rare event even though avian influenza viruses infect the ciliated epithelium of human airways in vitro and ex vivo. Using an in vitro model of human ciliated airway epithelium (HAE), we demonstrate that while human and avian influenza viruses efficiently infect at temperatures of the human distal airways (37°C), avian, but not human, influenza viruses are restricted for infection at the cooler temperatures of the human proximal ...

  10. Influence of palm fatty acid distillate on rumen degradability and protozoa population in buffaloes

    Directory of Open Access Journals (Sweden)

    Weber Vilas Boas Soares

    2010-11-01

    Full Text Available Oil and fat as energy sources at low cost are relevant in ruminant nutrition. The aim of this study was to evaluate the effects of palm fatty acid distillate (PFAD on the degradability and ciliate protozoa population in buffalo. Four rumen fistulated buffaloes were fed a basal diet in a Latin square (4x4 design trial. Treatments were designed with four of different levels of PFAD added directly into the rumen: 0; 200; 420 and 500 g/animal/d. High levels of PFAD (420 and 500 g/d promoted higher degradation of the soluble fraction and lower in potentially degradable fraction of dry matter (DM and neutral detergent fibre (NDF with lower values of potential and effective degradability in two evaluated grasses, bermudagrass and brachiariagrass. Significant decreases in the total number of protozoa/mL of rumen content, Entodinium and ciliates belonging to subfamily Diplodiniinae were observed at higher level of PFDA addition in the rumen. Also, Epidinium and Holotrich ciliates disappeared from the rumen. Significant correlations were observed of the ciliate concentration and composition as a function of dietary lipids content. Entodinium composition increased from 68.0% to 99.6% and Diplodiniinae reduced from 30.4% to 0.4% with increasing PFAD level indicating higher fat toxicity effect on the Diplodiniinae ciliates than Entodinium species and direct action of the larger ciliates on the fibre degradation.

  11. Influence of palm fatty acid distillate on rumen degradability and protozoa population in buffaloes

    Directory of Open Access Journals (Sweden)

    Raul Franzolin

    Full Text Available Oil and fat as energy sources at low cost are relevant in ruminant nutrition. The aim of this study was to evaluate the effects of palm fatty acid distillate (PFAD on the degradability and ciliate protozoa population in buffalo. Four rumen fistulated buffaloes were fed a basal diet in a Latin square (4x4 design trial. Treatments were designed with four of different levels of PFAD added directly into the rumen: 0; 200; 420 and 500 g/animal/d. High levels of PFAD (420 and 500 g/d promoted higher degradation of the soluble fraction and lower in potentially degradable fraction of dry matter (DM and neutral detergent fibre (NDF with lower values of potential and effective degradability in two evaluated grasses, bermudagrass and brachiariagrass. Significant decreases in the total number of protozoa/mL of rumen content, Entodinium and ciliates belonging to subfamily Diplodiniinae were observed at higher level of PFDA addition in the rumen. Also, Epidinium and Holotrich ciliates disappeared from the rumen. Significant correlations were observed of the ciliate concentration and composition as a function of dietary lipids content. Entodinium composition increased from 68.0% to 99.6% and Diplodiniinae reduced from 30.4% to 0.4% with increasing PFAD level indicating higher fat toxicity effect on the Diplodiniinae ciliates than Entodinium species and direct action of the larger ciliates on the fibre degradation.

  12. Organisms in rock bed contact-purification channel for improvement of eutrophic coastal water; Kaisui joka no rekikan sesshoku suironai no fuchaku teisei seibutsuso

    Energy Technology Data Exchange (ETDEWEB)

    Mori, M. [Shimizu Corp., Tokyo (Japan); Kadokura, N. [Kumagai Gumi Co. Ltd., Tokyo (Japan); Suda, Y. [Shimonoseki University of Fisheries, Yamaguchi (Japan); Tanaka, Y. [Toyo Construction Co. Ltd., Tokyo (Japan); Hosokawa, Y. [Port and Harbor Research Institute, Kanagawa (Japan)

    1996-08-10

    In order to identify living organism phases in a water purification channel for eutrophic coastal water, investigations were carried out on fouling and benthic organisms by using an experimental channel installed along a canal in the innermost part of Tokyo Bay. Phytoplanktons in influent are such algae as Skeletonema costatum, Navicula and Nitzschia which are often observed in coastal areas. Rock bed benthic organisms were Carchesium, Vorticella and Zoothamnium predominant in that order. The most predominant species in periphytons was Skeletonema costatum, an alga. In nine months after the water was first flown into the channel, seventeen kinds of large-size fouling and benthic animals were found living in the channel. Mollusca and Annelida contribute to purifying water and reducing water bottom mud, but reduce inter-rock spaces as individuals grow in size and number of individuals increases, causing clogging in the channel. When a rock bed contact-purification facility is operated in a water area, both of fouling and benthic animals living in that area appear in the channel. Species appeared in the present experimental channel were found similar to combination species appeared in the pier No. 13 and the artificial tideland off the Kasai coast. 41 refs., 3 figs., 3 tabs.

  13. Parasitic prevalences in fresh water prawn Macrobrachium rosenbergii in north and south 24 Parganas districts of West Bengal

    Directory of Open Access Journals (Sweden)

    Monjit Paul

    2010-01-01

    Full Text Available The occurrence of different freshwater prawn (Macrobrachium rosenbergii parasites, found during the period from April to August 2007, was investigated in different freshwater wetlands of north and south 24 Parganas districts of West Bengal state in India. Eleven parasites - Zoothamnium, Epistylis, Gregarina, Amphileptus, Dileptus, Myxobolus, Chilodonella, Balladyna, Gozia, Rhabdochona, Indocucullanus, Procamallanus and Cucullanus - were found after examining 1,000 specimens of Macrobrachium rosenbergii of different-sized groups. The highest prevalence of the parasites was recorded in the size group of 81-85 mm and 136-140 mm. The intensity of ectoparasitic infection was observed to be high with an increase in size. The gills and the surface of the body were mostly infected. Endoparasites were found in the intestinal part, and mostly due to poor raw foods given to the prawns as their diets. The parasites get more shelter and space for them. The highest intensity of those parasites was found in the month of August due to favourable autumnal conditions, with little rain and favourable breeding time of the parasites. Stressed and weak prawns are more vulnerable to infestation under adverse environmental conditions.

  14. Changes in nonnutritional factors and antioxidant activity during germination of nonconventional legumes.

    Science.gov (United States)

    Aguilera, Yolanda; Díaz, María Felicia; Jiménez, Tania; Benítez, Vanesa; Herrera, Teresa; Cuadrado, Carmen; Martín-Pedrosa, Mercedes; Martín-Cabrejas, María A

    2013-08-28

    The present study describes the effects of germination on nonnutritional factors and antioxidant activity in the nonconventional legumes Vigna unguiculata (cowpea), Canavalia ensiformis (jack bean), Lablab purpureus (dolichos), and Stizolobium niveum (mucuna). Protease inhibitors and lectins were detected in raw legumes and were significantly decreased during the germination. Regarding total and individual inositol phosphates (IP5-IP3), important reductions of IP6 and high increases in the rest of inositol phosphates were also detected during this process. In addition, total phenols, catechins, and proanthocyanidins increased, accompanied by an overall rise of antioxidant activity (79.6 μmol of Trolox/g of DW in the case of mucuna). Germination has been shown to be a very effective process to reduce nonnutritional factors and increase bioactive phenolic compounds and antioxidant activities of these nonconventional legumes. For this reason, they could be used as ingredients to obtain high-value legume flours for food formulation. PMID:23909570

  15. Activity of Flavanones Isolated from Rhododendron hainanense against Plant Pathogenic Fungi.

    Science.gov (United States)

    Li, Ya; Zhao, Jie; Gao, Kun

    2016-05-01

    In a search for naturally occurring antimicrobial compounds in medicinal plants and herbs, seven flavanones were isolated from the aerial parts of Rhododendron hainanense and were tested for their antimicrobial activities against six bacteria and six plant pathogenic fungi. Within the series of flavanones tested, farrerol (1) displayed moderate antibacterial activities against Bacillus cereus, B. subtilis, Pseudomonas aeruginosa, Staphylococcus aureus, Escherichia coli and Erwinia carotovora, with MICs ranging from 15.6 to 125 μg/mL. Furthermore, farrerol (1) exhibited excellent inhibitory activities against six plant pathogenic fungi: Fusarium oxysporum f sp. niveum, Colletotrichum gloeosporioides, Penicillium italicum, Rhizoctonia solani, Fusarium oxysporum f sp. cubenserace and Phytophthora melonis, with EC50 values of 9, 18, 35, 39, 46 and 66 μg/mL, respectively. This is the first report on farrerol with anti-plant pathogenic fungal activities. PMID:27319130

  16. Synthesis, crystal structure, biological activity and theoretical calculations of novel isoxazole derivatives

    Science.gov (United States)

    Jin, R. Y.; Sun, X. H.; Liu, Y. F.; Long, W.; Chen, B.; Shen, S. Q.; Ma, H. X.

    2016-01-01

    Series of isoxazole derivatives were synthesized by substituted chalcones and 2-chloro-6-fluorobenzene formaldehyde oxime with 1,3-dipolar cycloaddition. The target compounds were determined by melting point, IR, 1H NMR, elemental analyses and HRMS. The crystal structure of compound 3a was detected by X-ray diffraction and it crystallizes in the triclinic space group p2(1)/c with z = 4. The molecular geometry of compound 3a was optimized using density functional theory (DFT/B3LYP) method with the 6-31G+(d,p) basis set in the ground state. From the optimized geometry of the molecule, FT-IR, FT-Raman, HOMO-LUMO and natural bond orbital (NBO) were calculated at B3LYP/6-31G+(d,p) level. Finally, the antifungal activity of the synthetic compounds were evaluated against Pythium solani, Gibberella nicotiancola, Fusarium oxysporium f.sp. niveum and Gibberella saubinetii.

  17. 产铁载体PGPR菌筛选及其对病原菌的拮抗作用%Screening of siderophore-producing PGPR bacteria and their antagonism against the pathogens

    Institute of Scientific and Technical Information of China (English)

    荣良燕; 姚拓; 赵桂琴; 柴强; 席琳乔; 王小利

    2011-01-01

    By adopting improved CAS methods, the strains antagonistic against plant pathogens were firstly screened from the 16 PGPR strains, and the antagonistic experiments were then conducted by using 5 PGPR strains to 3 types of plant pathogens using plate cultivation.The results showed that LHS11 had the best inhibitory effects on Fusarium oxysporum f.sp.cucumerinum and F.oxysporum f.sp.niveum, vith the inhibition ratio over 80%; the inhibition ratio of 191 against F.oxysporum f.sp.cucumerinum was 74%.The inhibitory effects of LHS11 and 191 on Rhizoctonia solani were similar ( 64% and 65%, respectively).Both 191 and LHS11 could be used as PGPR biocontrol agents with good inhibitory effects and high application potential.%采用改进的CAS定性、定量方法,从16株PGPR菌株中初步筛选出具有抗病原真菌作用的菌株,再利用平板对峙法将筛选出的5株PGPR菌与3种病原真菌进行拮抗试验.结果表明,LHSll对黄瓜枯萎病菌(Fusarium oxysporUTh f.sp.cucumerinum),西瓜枯萎病菌(Fusarium oxysporum f.sp.niveum)的抑制效果最好,抑菌率达到80%以上;其次是191对黄瓜枯萎病菌,抑菌率为74%,LHSll、191对立枯丝核菌(Rhizoctonia solani)的抑制效果相近,抑菌率分别为64%和65%.191和LHSll是抑菌效果较好的生防PGPR菌株,具有较好的应用潜力.

  18. Efeito da monensina e do óleo de soja sobre os protozoários ciliados do rúmen e correlação dos protozoários com parâmetros da fermentação ruminal e digestivos Effect of monensin and soybean oil on rumen ciliate protozoa and correlation between protozoa with ruminal fermentation and digestive parameters

    OpenAIRE

    Isabel Martinele; Eduardo da Costa Eifert; Rogério de Paula Lana; Pedro Braga Arcuri; Marta D'Agosto

    2008-01-01

    Quatro vacas lactantes canuladas no rúmen, com 155 dias em lactação, foram dispostas em um quadrado latino 4 × 4 e alimentadas, duas vezes ao dia, com silagem de milho e concentrado (relação 55:45, base matéria seca), para se avaliarem os efeitos da monensina e do óleo de soja na dieta de vacas lactantes sobre a contagem de protozoários ciliados, além de estabelecer correlações entre os protozoários com alguns parâmetros da digestão e da fermentação ruminal. Os tratamentos consistiram da incl...

  19. Estudo dos protozoários ciliados em bovinos consumindo dietas com diferentes níveis de proteína não degradável no rúmen 1 - DOI: 10.4025/actascianimsci.v25i1.2146 Ciliated protozoa in the rumen of cattle under different levels of undegradable protein diets - DOI: 10.4025/actascianimsci.v25i1.2146

    OpenAIRE

    José Aparecido Cunha; José Carlos Machado Nogueira Filho; Maria Regina Coalho; César Gonçalves de Lima

    2003-01-01

    O experimento foi realizado no Departamento de Zootecnia da Faculdade de Zootecnia e Engenharia de Alimentos da Universidade de São Paulo, no Campus da USP, em Pirassununga, Estado de São Paulo, e teve por objetivos estudar a variação de pH e identificar e quantificar os protozoários ciliados do rúmen de bovinos submetidos a dietas com diferentes níveis de proteína não degradável no rúmen (PNDR), denominados tratamentos A-24%, B-30%, C-36% e D-42%. Todas as rações foram formuladas para serem ...

  20. Non-typeable Haemophilus influenzae decreases cilia beating via protein kinase C epsilon

    Directory of Open Access Journals (Sweden)

    Bailey Kristina L

    2012-06-01

    Full Text Available Abstract Background Haemophilus influenzae infection of the nasal epithelium has long been associated with observations of decreased nasal ciliary beat frequency (CBF and injury to the ciliated epithelium. Previously, we have reported that several agents that slow CBF also have the effect of activating protein kinase C epsilon (PKCϵ activity in bronchial epithelial cells. The subsequent auto-downregulation of PKCϵ or the direct inhibition of PKCϵ leads to the specific detachment of the ciliated cells. METHODS: Primary cultures of ciliated bovine bronchial epithelial cells were exposed to filtered conditioned media supernatants from non-typeable H. influenzae (NTHi cultures. CBF and motile points were measured and PKCϵ activity assayed. Results NTHi supernatant exposure significantly and rapidly decreased CBF in a dose-dependent manner within 10 minutes of exposure. After 3 hours of exposure, the number of motile ciliated cells significantly decreased. Direct measurement of PKCϵ activity revealed a dose-dependent activation of PKCϵ in response to NTHi supernatant exposure. Both CBF and PKCϵ activity changes were only observed in fresh NTHi culture supernatant and not observed in exposures to heat-inactivated or frozen supernatants. Conclusions Our results suggest that CBF slowing observed in response to NTHi is consistent with the stimulated activation of PKCϵ. Ciliated cell detachment is associated with PKCϵ autodownregulation.

  1. Microfaunal indicators, Ciliophora phylogeny and protozoan population shifts in an intermittently aerated and fed bioreactor

    Energy Technology Data Exchange (ETDEWEB)

    Ntougias, Spyridon, E-mail: sntougia@env.duth.gr [Democritus University of Thrace, Department of Environmental Engineering, Laboratory of Wastewater Management and Treatment Technologies, Vas. Sofias 12, 67100 Xanthi (Greece); Tanasidis, Spartakos; Melidis, Paraschos [Democritus University of Thrace, Department of Environmental Engineering, Laboratory of Wastewater Management and Treatment Technologies, Vas. Sofias 12, 67100 Xanthi (Greece)

    2011-02-28

    Microfauna community structure was examined in the mixed liquor of a bench-scale bioreactor equipped with an intermittent aeration and feeding system. The reactor was operated under an intermittent aeration of 25 min in every 1 h and varying feeding conditions (0.264, 0.403 and 0.773 kg BOD{sub 5}/m{sup 3} d). A total of 14 protozoan and metazoan taxa were identified by microscopic examination. Sessile ciliates, followed by crawling ciliates, were the major protozoan groups under 0.403 kg BOD{sub 5}/m{sup 3} d organic loading conditions, while sessile ciliate population was remarkably increased under an organic loading of 0.773 kg BOD{sub 5}/m{sup 3} d. Principal Component Analysis and Pearson correlation coefficient tests were performed in order to reveal relationships between microfauna community and operational parameters. Ciliophora specific-18S rRNA gene clone library was constructed to identify ciliate diversity under 0.773 kg BOD{sub 5}/m{sup 3} d organic loading conditions. Ciliophora diversity consisted of members of Aspidiscidae, Epistylidae, Opisthonectidae and Vorticellidae, with the majority of the clones being associated with the species Vorticella fusca. At least one novel phylogenetic linkage among Ciliophora was identified. Comparisons made after molecular characterization and microscopic examination of Ciliophora community showed that the estimation of broad ciliate groups is useful for ecological considerations and evaluation of the operational conditions in wastewater treatment plants.

  2. Characteristics of microfauna and their relationships with the performance of an activated sludge plant in China

    Institute of Scientific and Technical Information of China (English)

    ZHOU Kexin; XU Muqi; LIU Biao; CAO Hong

    2008-01-01

    The occurrence and abundance of the microfauna groups were compared with the physico-chemical and operational parameters of the Baoding Lugang Sewage Treatment Plant in China. Attached and crawling ciliates were the dominant groups of ciliates. Crawling ciliates and testate amoebae showed a strong association with effluent BOD5 (biochemical oxygen demand). Therefore, these two groups are likely to be useful bioindicators since their number decreased as the process produced poor quality effluent. Testate amoebae also had significant negative correlations with effluent TN (total nitrogen), NH4+-N, SS (suspended solids) and SVI (sludge volumetric index), which means that this group of ciliates may be indicators of good performance of the activated sludge system. Carnivorous ciliates and flagellates had significant positive correlations with SVI, suggesting that these two groups may be indicators of bad settlement conditions of sludge. As identification of the microfauna species is difficult and time-consuming, we recommend using microfauna functional groups to evaluate the performance of the activated sludge system.

  3. Effects of Predation by Protists on Prokaryotic Community Function, Structure, and Diversity in Anaerobic Granular Sludge

    Science.gov (United States)

    Hirakata, Yuga; Oshiki, Mamoru; Kuroda, Kyohei; Hatamoto, Masashi; Kubota, Kengo; Yamaguchi, Takashi; Harada, Hideki; Araki, Nobuo

    2016-01-01

    Predation by protists is top-down pressure that regulates prokaryotic abundance, community function, structure, and diversity in natural and artificial ecosystems. Although the effects of predation by protists have been studied in aerobic ecosystems, they are poorly understood in anoxic environments. We herein studied the influence of predation by Metopus and Caenomorpha ciliates—ciliates frequently found in anoxic ecosystems—on prokaryotic community function, structure, and diversity. Metopus and Caenomorpha ciliates were cocultivated with prokaryotic assemblages (i.e., anaerobic granular sludge) in an up-flow anaerobic sludge blanket (UASB) reactor for 171 d. Predation by these ciliates increased the methanogenic activities of granular sludge, which constituted 155% of those found in a UASB reactor without the ciliates (i.e., control reactor). Sequencing of 16S rRNA gene amplicons using Illumina MiSeq revealed that the prokaryotic community in the UASB reactor with the ciliates was more diverse than that in the control reactor; 2,885–3,190 and 2,387–2,426 operational taxonomic units (>97% sequence similarities), respectively. The effects of predation by protists in anaerobic engineered systems have mostly been overlooked, and our results show that the influence of predation by protists needs to be examined and considered in the future for a better understanding of prokaryotic community structure and function. PMID:27431197

  4. Microfaunal indicators, Ciliophora phylogeny and protozoan population shifts in an intermittently aerated and fed bioreactor

    International Nuclear Information System (INIS)

    Microfauna community structure was examined in the mixed liquor of a bench-scale bioreactor equipped with an intermittent aeration and feeding system. The reactor was operated under an intermittent aeration of 25 min in every 1 h and varying feeding conditions (0.264, 0.403 and 0.773 kg BOD5/m3 d). A total of 14 protozoan and metazoan taxa were identified by microscopic examination. Sessile ciliates, followed by crawling ciliates, were the major protozoan groups under 0.403 kg BOD5/m3 d organic loading conditions, while sessile ciliate population was remarkably increased under an organic loading of 0.773 kg BOD5/m3 d. Principal Component Analysis and Pearson correlation coefficient tests were performed in order to reveal relationships between microfauna community and operational parameters. Ciliophora specific-18S rRNA gene clone library was constructed to identify ciliate diversity under 0.773 kg BOD5/m3 d organic loading conditions. Ciliophora diversity consisted of members of Aspidiscidae, Epistylidae, Opisthonectidae and Vorticellidae, with the majority of the clones being associated with the species Vorticella fusca. At least one novel phylogenetic linkage among Ciliophora was identified. Comparisons made after molecular characterization and microscopic examination of Ciliophora community showed that the estimation of broad ciliate groups is useful for ecological considerations and evaluation of the operational conditions in wastewater treatment plants.

  5. Abundance and species composition of planktonic Ciliophora from the wastewater discharge zone in the Bahía Blanca Estuary, Argentina

    Directory of Open Access Journals (Sweden)

    María Sonia Barría de Cao

    2003-09-01

    Full Text Available The specific composition and abundance variation of the ciliate community from a wastewater discharge zone in the Bahía Blanca estuary, Argentina, were studied all throughout a year, from June 1995 to May 1996. The polluted area exhibited high values of particulate organic matter and nutrients, particularly phosphates. Aloricate ciliates were represented by 15 species belonging to the genera Strombidium Claparède & Lachmann, 1859; Strombidinopsis Kent, 1881; Cyrtostrombidium Lynn & Gilron, 1993; Strobilidium Schewiakoff, 1983; Lohmmanniella Leegaard, 1915 and Tontonia Fauré-Fremiet, 1914. Tintinnids were represented by nine species belonging to the genera Tintinnidium Kent, 1881, Tintinnopsis Stein, 1867 and Codonellopsis Jörgensen, 1924. The total abundance of aloricate ciliates reached a peak of 1,800 ind. 1-1 and the total abundance of tintinnids reached a peak of 9,400 ind. 1-1. Tintinnidium balechi Barría de Cao, 1981 was the most abundant ciliate in the community. Considerations on the presence and abundance of ciliates are made in relation to physicochemical and biochemical parameters.

  6. Linking foraging strategies of marine calanoid copepods to patterns of nitrogen stable isotope signatures in a mesocosm study

    DEFF Research Database (Denmark)

    Sommer, Frank; Saage, A.; Santer, B.;

    2005-01-01

    The foraging modes of calanoid copepods differ in that stationary suspension-feeding is more easily detected by prey with strong escape responses (ciliates) than is 'cruising' or 'ambushing' feeding. Thus, the ability of a copepod to include heterotrophic prey in its diet may be associated with its...... copepod delta(15)N to generally increase with decreasing copepod density because of increased food availability, and predicted stronger increases for cruising than for stationary suspension-fee ding species. As an assemblage, copepods had a pronounced impact on the food web: diatoms and ciliates decreased...... longicornis, a stationary suspension-feeder, showed a uniform isotopic increase in all mesocosms, which we believe resulted from nutritional stress arising from poor feeding on both ciliates (too fast for ingestion by T. longicornis) and nanoflagellates (too small). However, Pseudocalanus elongatus, a species...

  7. Cyc17, a meiosis-specific cyclin, is essential for anaphase initiation and chromosome segregation in Tetrahymena thermophila.

    Science.gov (United States)

    Yan, Guan-Xiong; Dang, Huai; Tian, Miao; Zhang, Jing; Shodhan, Anura; Ning, Ying-Zhi; Xiong, Jie; Miao, Wei

    2016-07-17

    Although the role of cyclins in controlling nuclear division is well established, their function in ciliate meiosis remains unknown. In ciliates, the cyclin family has undergone massive expansion which suggests that diverse cell cycle systems exist, and this warrants further investigation. A screen for cyclins in the model ciliate Tetrahymena thermophila showed that there are 34 cyclins in this organism. Only 1 cyclin, Cyc17, contains the complete cyclin core and is specifically expressed during meiosis. Deletion of CYC17 led to meiotic arrest at the diakinesis-like metaphase I stage. Expression of genes involved in DNA metabolism and chromosome organization (chromatin remodeling and basic chromosomal structure) was repressed in cyc17 knockout matings. Further investigation suggested that Cyc17 is involved in regulating spindle pole attachment, and is thus essential for chromosome segregation at meiosis. These findings suggest a simple model in which chromosome segregation is influenced by Cyc17. PMID:27192402

  8. Molecular genetic investigations on Balantidium ctenopharyngodoni Chen, 1955, a parasite of the grass carp (Ctenopharyngodon idella).

    Science.gov (United States)

    Marton, Szilvia; Bányai, Krisztián; Forró, Barbara; Lengyel, György; Székely, Csaba; Varga, Ádám; Molnár, Kálmán

    2016-06-01

    Balantidium ctenopharyngodoni is a common ciliate in Hungary, infecting the hindgut of grass carp (Ctenopharyngodon idella), a cyprinid fish of Chinese origin. Although data have already been presented on its occasional pathogenic effect on the endothelium of the host, generally it is a harmless inhabitant of the gut. Phylogenetic analysis of the 18S rDNA and ITS fragments of this protozoan proved that it is in the closest phylogenetic relationship with endocommensalist and symbiont ciliates of mammals feeding on large volumes of green forage, in a similar way as Balantidium spp. known from algae-eating marine fishes. PMID:27342092

  9. Larval nervous systems

    DEFF Research Database (Denmark)

    Nielsen, Claus

    2015-01-01

    The apical organ of ciliated larvae of cnidarians and bilaterians is a true larval organ that disappears before or at metamorphosis. It appears to be sensory, probably involved in metamorphosis, but knowledge is scant. The ciliated protostome larvae show ganglia/nerve cords that are retained as the...... ‘deuterostomian’ blastopore fates both in an annelid and in a mollusk, which are both placed in families with the ‘normal’ spiralian gastrulation type, and in the chaetognaths demonstrates that the chordate type of gastrulation could easily have evolved from the spiralian type. This indicates that the latest...

  10. Tetrahymena thermophila, a unicellular eukaryote with separate germline and somatic genomes

    Science.gov (United States)

    Orias, Eduardo; Cervantes, Marcella D.; Hamilton, Eileen P.

    2011-01-01

    Tetrahymena thermophila is a ciliate -- a unicellular eukaryote. Remarkably, every cell maintains differentiated germline and somatic genomes: one silent, the other expressed. Moreover, the two genomes undergo diverse processes, some as extreme as life and death, simultaneously in the same cytoplasm. Conserved eukaryotic mechanisms have been modified in ciliates to selectively deal with the two genomes. We describe research in several areas of Tetrahymena biology, including meiosis, amitosis, genetic assortment, selective nuclear pore transport, somatic RNAi-guided heterochromatin formation, DNA excision and programmed nuclear death by autophagy, which has enriched and broadened knowledge of those mechanisms. PMID:21624459

  11. The role of Scgb1a1+ Clara cells in the long-term maintenance and repair of lung airway, but not alveolar, epithelium

    OpenAIRE

    Rawlins, Emma L.; Okubo, Tadashi; Xue, Yan; Brass, David M; Auten, Richard L.; Hasegawa, Hiroshi; Wang, Fan; Hogan, Brigid L.M.

    2009-01-01

    To directly test the contribution of Scgb1a1+ Clara cells to postnatal growth, homeostasis and repair of lung epithelium, we generated a Scgb1a1-CreERTM “knock-in” mouse line for lineage tracing these cells. Under all conditions tested the majority of Clara cells in the bronchioles both self-renew and generate ciliated cells. In the trachea, Clara cells give rise to ciliated cells but do not self-renew extensively. Nevertheless, they can contribute to tracheal repair. In the postnatal mouse l...

  12. A multi-Species Microalgae Bloom in Bahia de La Paz, Gulf of California, México (June 2008)

    OpenAIRE

    Gárate Lizárraga, Ismael; Band Schmidt, Christine Johanna; AGUIRRE BAHENA, FERNANDO; GRAYEB DEL ALAMO, TANOS

    2009-01-01

    Red tides Patches were observed in Bahía de La Paz in June 17 and 18 of 2008. According to temperature and wind data this bloom occurred under upwelling-like conditions. Examination of the red tide samples showed that the ciliate Myrionecta rubra and two naked dinoflagellates Gyrodinium instriatum and Katodinium glaucum as the main species responsible for this bloom Total density (microalgae and ciliate) at the sampling stations was similar on both days, varying from 4607 × 103 to cells L-1 t...

  13. On combinatorial properties of elementary intramolecular operations

    Directory of Open Access Journals (Sweden)

    Vladimir Rogojin

    2014-11-01

    Full Text Available Here we tackle a problem from biology in terms of discrete mathematics. We are interested in a complex DNA manipulation process happening in eukaryotic organisms of a subclass of ciliate species called {\\it Stichotrichia} during so-called gene assembly. This process is in particular interesting since one can interpret gene assembly in ciliates as sorting of permutations. We survey here results related to studies on sorting permutations with some specific rewriting rules that formalize elementary intramolecular gene assembly operations. The research question is ``what permutation may be sorted with our operations?"

  14. Effect of coconut oil and defaunation treatment on methanogenesis in sheep

    OpenAIRE

    Machmüller, Andrea; Soliva, Carla; Kreuzer, Michael

    2003-01-01

    The present study was conducted to evaluate in vivo the role of rumen ciliate protozoa with respect to the methane-suppressing effect of coconut oil. Three sheep were subjected to a 2 $\\times$ 2 factorial design comprising two types of dietary lipids (50 g$\\cdot$kg$^{-1}$ coconut oil vs. 50 g$\\cdot$kg$^{-1}$ rumen-protected fat) and defaunation treatment (with vs. without). Due to the defaunation treatment, which reduced the rumen ciliate protozoa population by 94% on average, total tract fib...

  15. Ornitholimnology: Effects of grazing by the Andean flamingo (Phoenicoparrus andinus).

    Science.gov (United States)

    Hurlbert, S H; Chang, C C

    1983-08-01

    Experimental exclusion of the Andean flamingo (Phoenicoparrus andinus) from shallow water areas of a salt lake in the Bolivian Andes caused large increases in the biomass of microorganisms inhabiting the surface sediments, especially a large diatom (Surirella wetzeli), amebas, ciliates, and nematodes. This is a conservative demonstration of the influences that water birds in general exert on the structure of aquatic ecosystems. PMID:16593350

  16. Ornitholimnology: Effects of grazing by the Andean flamingo (Phoenicoparrus andinus)

    OpenAIRE

    Hurlbert, Stuart H.; Chang, Cecily C. Y.

    1983-01-01

    Experimental exclusion of the Andean flamingo (Phoenicoparrus andinus) from shallow water areas of a salt lake in the Bolivian Andes caused large increases in the biomass of microorganisms inhabiting the surface sediments, especially a large diatom (Surirella wetzeli), amebas, ciliates, and nematodes. This is a conservative demonstration of the influences that water birds in general exert on the structure of aquatic ecosystems.

  17. Normobaric Hypoxia Induces Mild Damage to Epithelium of Terminal Bronchioles in Rabbits (Ultrastructural Study)

    Czech Academy of Sciences Publication Activity Database

    Uhlík, J.; Konrádová, V.; Vajner, L.; Adášková, Jana

    2005-01-01

    Roč. 50, č. 10 (2005), s. 432-438. ISSN 0375-8427 Source of funding: V - iné verejné zdroje Keywords : airways * Clara cells * ciliated cells * electron microscopy Subject RIV: BB - Applied Statistics, Operational Research Impact factor: 0.621, year: 2005

  18. Comparison of Effect of Hypoxia on Epithelium of Trachea and Terminal Bronchioles

    Czech Academy of Sciences Publication Activity Database

    Uhlík, J.; Konrádová, V.; Vajner, L.; Adášková, Jana; Herget, J.

    2003-01-01

    Roč. 9, Suppl. 3 (2003), s. 478-479. ISSN 1431-9276. [Microscopy Conference /31./. Dresden, 07.09.2003-12.09.2003] Source of funding: V - iné verejné zdroje Keywords : airway epithelium * Clara cells * ciliated cells * hypoxia * electron microscopy Subject RIV: BB - Applied Statistics, Operational Research Impact factor: 1.648, year: 2003

  19. Vertical distribution, grazing and egg production of calanoid copepods during winter-spring in Gullmarsfjorden

    DEFF Research Database (Denmark)

    Titelman, J.; Tiselius, P.

    1998-01-01

    were superfluous throughout the water column. Copepods and ciliates were never correlated. Ingestion as determined from gut fluorescence and egg production analyses suggested a higher degree of herbivory during the spring bloom than before and after. There was potential for copepod predation control of...

  20. The secondary structure of large-subunit rRNA divergent domains, a marker for protist evolution

    DEFF Research Database (Denmark)

    Lenaers, G; Nielsen, Henrik; Engberg, J;

    1988-01-01

    ), Tetrahymena thermophila (ciliate), Physarum polycephalum and Dictyostelium discoideum (slime moulds), Crithidia fasciculata and Giardia lamblia (parasitic flagellates). The folding for the D3, D7a and D10 divergent domains has been refined and a consensus model for the protist 24-26S rRNA structure is...

  1. Do protozoa control the elimination of Vibrio cholerae in brackish water?

    Czech Academy of Sciences Publication Activity Database

    Martínez-P., M. E.; Macek, Miroslav; Castro-G., M. T.

    2004-01-01

    Roč. 89, č. 2 (2004), s. 215-227. ISSN 1434-2944 R&D Projects: GA MŠk(CZ) ME 296 Grant ostatní: UNAM/DGAPA/PAPIT(MX) IN216796 Keywords : ciliate feeding * selectivity * toxin producing bacteria Subject RIV: EE - Microbiology, Virology Impact factor: 0.742, year: 2004

  2. External morphology of the cycliophoran dwarf male: a comparative study of Symbion pandora and S. americanus

    DEFF Research Database (Denmark)

    Neves, Ricardo C.; Cunha, Marina R.; Funch, Peter;

    2010-01-01

    microscopy. In both species, anterior and ventral ciliated fields, as well as paired lateral sensorial organs, were identified, thus confirming previous observations. However, new details are described herein such as the penial pouch that encloses the penis. We compare our findings on both Symbion species...

  3. Protozoa: a novel Campylobacter reservoir?

    Science.gov (United States)

    In previous in vitro studies we found that Campylobacter jejuni remained viable for longer periods of time when they were cultivated in the presence of Tetrahymena pyriformis (ciliate) and Acanthamoeba castellanii (amoeba) than when they were in an independent planktonic state. Increased survival t...

  4. Limnological survey of the lakes Wielki Staw and Mały Staw in the Giant Mts. (Karkonosze

    Czech Academy of Sciences Publication Activity Database

    Vrba, Jaroslav; Fott, J.; Kohout, L.; Kopáček, Jiří; Macek, M.; Nedbalová, L.

    2008-01-01

    Roč. 45, - (2008), s. 45-58. ISSN 0139-925X. [Geoekologické problémy Krkonoš. Svoboda nad Úpou, 03.10.2006 - 05.10.2006] Institutional research plan: CEZ:AV0Z60170517 Keywords : lake acid ification * plankton recovery * zooplankton * phytoplankton * bacteria * ciliates Subject RIV: EH - Ecology, Behaviour

  5. The revised classification of eukaryotes

    Czech Academy of Sciences Publication Activity Database

    Adl, S.; Simpson, A. G. B.; Lane, C. E.; Lukeš, Julius; Bass, D.; Bowser, S. S.; Brown, M W.; Burki, F.; Dunthorn, M.; Hampl, V.; Heiss, A.; Hoppenrath, M.; Lara, E.; Gall, L. L.; Lynn, D. H.; McManus, H.; Mitchell, E. A. D.; Mozley-Stanridge, S. E.; Parfrey, L. W.; Pawlowski, J.; Rueckert, S.; Shadwick, L.; Schoch, C.L.; Smirnov, A.; Spiegel, F. W.

    2012-01-01

    Roč. 59, č. 5 (2012), s. 429-514. ISSN 1066-5234 Institutional support: RVO:60077344 Keywords : Algae * amoebae * biodiversity * ciliates * flagellates * fungi * parasites * protozoa * systematics * taxonomy Subject RIV: EB - Genetics ; Molecular Biology Impact factor: 2.162, year: 2012 http://onlinelibrary.wiley.com/doi/10.1111/j.1550-7408.2012.00644.x/pdf

  6. Parasitism by protozoan Ichthyophthirius enhanced invasion of Aeromonas hydrophila in channel catfish

    Science.gov (United States)

    In aquaculture production mortality resulting from a single pathogen is rare. More likely, multiple disease agents are present and responsible for disease losses. The ciliated protozoan Ichthyophthirius multifiliis is a common parasite of freshwater fish and frequently causes mass kills of culture...

  7. Regeneration of tracheal epithelium using mouse induced pluripotent stem cells.

    Science.gov (United States)

    Ikeda, Masakazu; Imaizumi, Mitsuyoshi; Yoshie, Susumu; Otsuki, Koshi; Miyake, Masao; Hazama, Akihiro; Wada, Ikuo; Omori, Koichi

    2016-04-01

    Conclusion The findings demonstrated the potential use of induced pluripotent stem cells for regeneration of tracheal epithelium. Objective Autologous tissue implantation techniques using skin or cartilage are often applied in cases of tracheal defects with laryngeal inflammatory lesions and malignant tumor invasion. However, these techniques are invasive with an unstable clinical outcome. The purpose of this study was to investigate regeneration in a tracheal defect site of nude rats after implantation of ciliated epithelium that was differentiated from induced pluripotent stem cells. Method Embryoid bodies were formed from mouse induced pluripotent stem cells. They were cultured with growth factors for 5 days, and then cultured at the air-liquid interface. The degree of differentiation achieved prior to implantation was determined by histological findings and the results of real-time polymerase chain reaction. Embryoid bodies including ciliated epithelium were embedded into collagen gel that served as an artificial scaffold, and then implanted into nude rats, creating an 'air-liquid interface model'. Histological evaluation was performed 7 days after implantation. Results The ciliated epithelial structure survived on the lumen side of regenerated tissue. It was demonstrated histologically that the structure was composed of ciliated epithelial cells. PMID:26755348

  8. Combining O2 Microsensors and Fiber-Optic Technology to Measure Photo-Physiological Responses of Symbiodinium

    DEFF Research Database (Denmark)

    Ulstrup, Karin Elizabeth; Kühl, Michael; Ralph, Peter;

    ) monotypic Symbiodinium associating with a coral (Pocillopora damicornis), ii) a ciliate forming a brown band on the coral Acropora muricata, and iii) a genotypically diverse Symbiodinium association with Acropora valida. In all instances, the combination of fibre-optic technology and an O2 microelectrode...

  9. Microfaunal primary succession on the volcanic island Surtsey

    DEFF Research Database (Denmark)

    Frederiksen, Helle B.; Kraglund, H. O.; Ekelund, F.

    2001-01-01

    , ciliates and nematodes were absent and only amoebae and heterotrophic flagellates were found. Most of the protozoan populations we examined were unable to survive salinity levels corresponding to seawater. We therefore conclude that many of soil protozoa populations on Surtsey arrived to the island as...

  10. Meeting on the Microbiology of Soils, Autumn 2001: Estimation of protozoan diversity in soil

    DEFF Research Database (Denmark)

    Ekelund, Flemming

    2002-01-01

    Different methods of estimating protozoan diversity in soil are discussed in this paper, with the major emphasis on heterotrophic flagellates. Although many species of ciliates and testate amoebae seem to be unique to the soil environment, the communities of heterotrophic flagellates and naked am...

  11. The infection of chicken tracheal epithelial cells with a H6N1 avian influenza virus.

    Directory of Open Access Journals (Sweden)

    Ching-I Shen

    Full Text Available Sialic acids (SAs linked to galactose (Gal in α2,3- and α2,6-configurations are the receptors for avian and human influenza viruses, respectively. We demonstrate that chicken tracheal ciliated cells express α2,3-linked SA, while goblet cells mainly express α2,6-linked SA. In addition, the plant lectin MAL-II, but not MAA/MAL-I, is bound to the surface of goblet cells, suggesting that SA2,3-linked oligosaccharides with Galβ1-3GalNAc subterminal residues are specifically present on the goblet cells. Moreover, both α2,3- and α2,6-linked SAs are detected on single tracheal basal cells. At a low multiplicity of infection (MOI avian influenza virus H6N1 is exclusively detected in the ciliated cells, suggesting that the ciliated cell is the major target cell of the H6N1 virus. At a MOI of 1, ciliated, goblet and basal cells are all permissive to the AIV infection. This result clearly elucidates the receptor distribution for the avian influenza virus among chicken tracheal epithelial cells and illustrates a primary cell model for evaluating the cell tropisms of respiratory viruses in poultry.

  12. Effects of toxic cyanobacteria on plankton assemblage : community development during decay of Nodularia spumigena

    DEFF Research Database (Denmark)

    Engström-Öst, J.; Koski, Marja; Schmidt, K.;

    2002-01-01

    We studied the development of the plankton community in an artificially created toxic Nodularia spumigena bloom during a 2 wk enclosure study at the SW coast of Finland in the Baltic Sea. We measured bacterial abundance, dominant phytoplankton groups and ciliates, as well as concentrations of phy...

  13. Disease: H01087 [KEGG MEDICUS

    Lifescience Database Archive (English)

    Full Text Available 04) PMID:17402277 (description) Karanis P, Kourenti C, Smith H Waterborne transmission of protozoa...tozoa as causal agents of waterborne zoonotic disease. Vet Parasitol 126:91-120 (20...m coli. Clin Microbiol Rev 21:626-38 (2008) PMID:15567581 (descrition, env_factor) Schuster FL, Visvesvara GS Amebae and ciliated pro

  14. Symbiosis and Rumen Protozoa

    Science.gov (United States)

    Dillon, Raymond D.

    1970-01-01

    Protozoa inhabiting the rumen of large grazing animals can be used to illustrate symbiotic animal associations. Gives a key to the ciliates most commonly found, several drawings, and a chart relating rumen fauna to the phylogenetic tree of the hosts. (EB)

  15. Evolutionary implications of genetic code deviations

    International Nuclear Information System (INIS)

    By extending the standard genetic code into a temperature dependent regime, we propose a train of molecular events leading to alternative coding. The first few examples of these deviations have already been reported in some ciliated protozoans and Gram positive bacteria. A possible range of further alternative coding, still within the context of universality, is pointed out. (author)

  16. Mechanical filtering by the boundary layer and fluid-structure interaction in the superficial neuromast of the fish lateral line system

    NARCIS (Netherlands)

    McHenry, Matthew J.; Strother, James A.; van Netten, Sietse M.

    2008-01-01

    A great diversity of aquatic animals detects water flow with ciliated mechanoreceptors on the body's surface. In order to understand how these receptors mechanically filter signals, we developed a theoretical model of the superficial neuromast in the fish lateral line system. The cupula of the neuro

  17. Big answers from small worlds: a user’s quide for protist microcosms as a model system in ecology and evolution

    Czech Academy of Sciences Publication Activity Database

    Altermatt, F.; Fronhofer, E. A.; Garnier, A.; Giometto, A.; Hammes, F.; Klečka, Jan; Legrand, D.; Mächler, E.; Massie, T. M.; Pennekamp, F.; Plebani, M.; Pontarp, M.; Schtickzelle, N.; Thuillier, V.; Petchey, O. L.

    2015-01-01

    Roč. 6, č. 2 (2015), s. 218-231. ISSN 2041-210X Grant ostatní: Sciex fellowship(CH) 12.327 Institutional support: RVO:60077344 Keywords : ciliates * comparability * ecological theory Subject RIV: EH - Ecology, Behaviour Impact factor: 6.554, year: 2014 http://onlinelibrary.wiley.com/doi/10.1111/2041-210X.12312/epdf

  18. Taxonomy and Physiology of un-wanted bacterial flora in activated sludge process. Study in a pilot plant; Taxonomia y fisiologia de la flora bacteriana indeseable en el proceso de fangos activados. Estudio de una plant piloto

    Energy Technology Data Exchange (ETDEWEB)

    Berrocal Escobar, M.; Lopez Fernandez, C. L.; Arias Fernandez, M. E.; Perez Leblic, M. I.; Zapatero Martin, I.; Leton Garcia, P.; Garcia Calvo, E. [Universidad de Alcala de Henares. Madrid (Spain); Aznar Munoz, R.; Rodriguez Medina, P. [Departamento Tecnico y de Calidad de Seragua, S.A. Madrid (Spain)

    1998-12-31

    The activated sludge used in the wastewater depuration in treatment plants could be considered as an artificial microbial ecosystem in balance. In this community which is constituted by free and flocculated bacteria, protozoa, rotifers, nematodes and a few other invertebrates, the stability of the system is maintained by the continuous food competition. The breakdown of this stability due to a high proliferation of filametous bacteria drive to the phenomenon called bulking. Nowadays, to avoid bulking is one of the main objectives in research because is the main cause of the malfunction of wastewater depuration interfering with compaction, settling, thickening and, concentration of activated sludge. In the present work, a taxonomical and physiological study of the microbial community which carries out the cleaning of wastewater in an activated sludge system has been performed by using an airlift bioreactor working in continuous. Activated sludge coming from a conventional wastewater plant was used as inoculum (starter culture). The nutritional conditions and bioreactor system parameters in which the filamentous bacteria grow in excess have been established. Several of filamentous bacteria responsible for bulking have been identified: Sphaerotilus natans, type 021N, Nocardia spp., Microthrix parvicella, Thiotrix I, Thiotrix II, type 0803, type 0581, Nostocoida limicola I and III and, type 1863. In addition, protozoa of groups involved in the depuration process (free-swimming ciliates, attached ciliates, crawling ciliates, carnivorous ciliates, flagellates and amoebae) were observed as well as rotifer and nematode populations. (Author) 13 refs.

  19. Triassic leech cocoon from Antarctica contains fossil bell animal

    DEFF Research Database (Denmark)

    Bomfleur, Benjamin; Kerp, Hans; Taylor, Thomas N.;

    2012-01-01

    , exceptional fossil deposits that preserve soft-bodied organisms provide a rare glimpse of the true biodiversity during past periods of Earth history. We here present an extraordinary find of a fossil ciliate that is encased inside the wall layer of a more than 200 Ma leech cocoon from Antarctica. The...

  20. The luminal surface of thyroid cysts in SEM

    DEFF Research Database (Denmark)

    Zelander, T; Kirkeby, S

    1978-01-01

    Four of the five kinds of cells constituting the walls of thyroid cysts can be identified in the SEM. These are cuboidal cells, mucous cells, cells with large granules and ciliated cells. A correlation between SEM and TEM observations is attempted....

  1. Protozoa and metazoa relations to technological conditions of non-woven textile filters for wastewater treatment.

    Science.gov (United States)

    Spychała, Marcin; Sowińska, Aleksandra; Starzyk, Justyna; Masłowski, Adam

    2015-01-01

    The objective of this study was a preliminary identification of basic groups of micro-organisms in the cross-sectional profile of geotextile filters for septic tank effluent (STE) treatment and their relations to technological conditions. Reactors with textile filters treating wastewater were investigated on a semi-technical scale. Filters were vertically situated and STE was filtered through them under hydrostatic pressure at a wastewater surface height of 7-20 cm. Filters were made of four layers of non-woven TS 20 geotextile of 0.9 mm thickness. Various groups of organisms were observed; the most abundant group comprised free-swimming and crawling ciliates, less abundant were stalked ciliates and the least numerous were nematodes. The individual counts of all groups of micro-organisms investigated during the study were variable according to time and space. The high abundance of Opercularia, a commonly observed genus of stalked ciliates, was related to the high efficiency of wastewater treatment and dissolved oxygen concentration of about 1.0 g/m3. Numbers of free-swimming and crawling ciliates had a tendency to decrease in relation to the depth of filter cross-sectional profile. The variability in counts of particular groups of organisms could be related to the local stress conditions. No correlation between identified organism count and total mass concentration in the cross-sectional filter profile was found. PMID:25704123

  2. Validation of Flotac for the detection and quantification of Troglodytella abrassarti and Neobalantidium coli in chimpanzees and pigs

    Czech Academy of Sciences Publication Activity Database

    Růžicová, M.; Petrželková, Klára Judita; Kalousová, B.; Modrý, D.; Pomajbíková, K.

    2014-01-01

    Roč. 100, č. 5 (2014), s. 662-670. ISSN 0022-3395 R&D Projects: GA ČR GA206/09/0927 Institutional support: RVO:68081766 Keywords : ciliates * chimpanzees * pigs Subject RIV: EG - Zoology Impact factor: 1.227, year: 2014

  3. Effects of Temperature on Production and Specificity of Antibodies in Rainbow Trout (Oncorhynchus mykiss)

    DEFF Research Database (Denmark)

    Mikkelsen, Heidi; Nielsen, Michael Engelbrecht; Lindenstrom, Thomas

    2006-01-01

    The effect of temperature on production and affinity of antibodies against antigens from the parasitic ciliate Ichthyophthirius multifiliis were studied in rainbow trout (Oncorhynchus mykiss). Fish were immunized with I. multifiliis antigens and reared at three different temperatures, 5, 12, and ...

  4. Morphology of non-sensory epithelium during post-natal development of the rabbit vomeronasal organ.

    Science.gov (United States)

    Elgayar, S A M; Eltony, S A; Othman, M A

    2014-08-01

    The vomeronasal organ (VNO), because of its ability to detect pheromones, has an important role in many social and sexual behaviours in mammals. It also mediates defensive behaviours through detection of protein pheromone homologues. A detailed morphological description of the post-natal development of the 'non-sensory' epithelium (NSE) of the female rabbit is recorded. Histological techniques were used to study the NSE of the VNO in post-natal development of female rabbits. The study focused on the following post-natal ages: newborn, 1 week, 2 weeks and 1 month (five animals each) beside to two adult animals. The rabbit VNO was surrounded externally by bony capsule and internally by cartilaginous capsule. NSE was pseudostratified columnar partially ciliated epithelium without goblet cells. In addition to basal cells, NSE contained ciliated and three types of non-ciliated columnar cells (dark, pale and light). At birth, dark cells may have primary cilia. By 1 month, the cytoplasm became lighter with less free ribosomes. The pale cells had electron-lucent cytoplasm, which contained a few organelles. Mitotic figures were observed in basal and columnar cells, particularly during the first 2 weeks of post-natal development. Light columnar cells were common during the first week. Numerous leucocytes and a few nerve endings were detected intra-epithelial. Scanning electron microscope revealed a gradual increase in height of microvilli of non-ciliated cells. Ciliated cells had cilia and microvilli. Cells were arranged singly, in clumps or in a dense population of cells. The rabbit VNO-NSE had a unique morphological structure. PMID:23931650

  5. Antagonism of Trichoderma harzianum NF9 and Trichoderma virens TY against Three Plant Fungous Pathogens%木霉菌对植物病原真菌拮抗作用的研究

    Institute of Scientific and Technical Information of China (English)

    姚艳平; 李友莲; 王建明; 张作刚

    2013-01-01

    木霉菌是重要的植物病害生防菌.通过对峙培养法,测定了哈茨木霉(Trichoderma harzianum)菌株NF9和绿木霉(Tric hode rmavire ns)菌株TY对3种土传植物病原真菌的体外拮抗作用.结果表明,这2株木霉菌对黄瓜枯萎病菌、西瓜枯萎病菌及茄子白绢病菌均具有一定的拮抗作用,不同木霉菌株间拮抗效果存在差异,哈茨木霉菌株NF9优于绿木霉菌株TY.%The fungous Trichoderma is an important microorganism in the biological control of plant diseases. The antagonism of Trichoderma harzianum NF9 and Trichoderma virens TY against three soil-borne plant fungous pathogens, Fusarium oxysporum Schl. f. sp. cucumerin Owen, Sclerotium rolfsii and Fusarium oxysporum Schl. f. sp. niveum, were tested in vitro by dual—culture. The result showed that two Trichoderma isolates had antagonism effect on the tested pathogens, and Trichoderma harzianum NF9 was better than Trichoderma virens TY in antagonism effect.

  6. MICROBIAL COMMUNITIES OF KARPOSPHAERA AND PHILLOPLAN OF SOME PLANTS OF GROSSULARIACEAE FAMILY

    Directory of Open Access Journals (Sweden)

    Erina N. V.

    2015-06-01

    Full Text Available The article presents the results of the research of microflora composition of the leaf surface, the surface of fruit and flowers of Ribes nigrum, R. niveum, R . rubrum and Grossularia reclinata. The research was carried out in the seasonal dynamics from 2007 to 2014. The authors used the method of print for isolating microorganisms from plants. For convenience of calculations and contamination comparison of different environmental niches of plants the number of selected microorganisms was counted on the surface of 1 cm2. It was found out in the article that microorganisms on the surface of lamina are distributed unequally. The number of microorganisms on the bottom surface of the foliage in all periods turned out to be higher. The greatest number of microorganisms was recorded in autumn and reaches the highest value in October. The number of microorganisms on fruit surface increased with ripening and was the highest in July. The quantity on the flowers varies considerably throughout the flowering and is represented minimally compared to other plants niches. The study revealed species-specificity of microorganisms and the host plants. At the same time, long-term study of the microflora of plants belonging to one family made it possible to reveal species that are typical epiphytes

  7. Plant and root endophyte assembly history: interactive effects on native and exotic plants.

    Science.gov (United States)

    Sikes, Benjamin A; Hawkes, Christine V; Fukami, Tadashi

    2016-02-01

    Differences in the arrival timing of plants and soil biota may result in different plant communities through priority effects, potentially affecting the success of native vs. exotic plants, but experimental evidence is largely lacking. We conducted a greenhouse experiment to investigate whether the assembly history of plants and fungal root endophytes could interact to influence plant emergence and biomass. We introduced a grass species and eight fungal species from one of three land-use types (undisturbed, disturbed, or pasture sites in a Florida scrubland) in factorial combinations. We then introduced all plants and fungi from the other land-use types 2 weeks later. Plant emergence was monitored for 6 months, and final plant biomass and fungal species composition assessed. The emergence and growth of the exotic Melinis repens and the native Schizacharyium niveum were affected negatively when introduced early with their "home" fungi, but early introduction of a different plant species or fungi from a different site type eliminated these negative effects, providing evidence for interactive priority effects. Interactive effects of plant and fungal arrival history may be an overlooked determinant of plant community structure and may provide an effective management tool to inhibit biological invasion and aid ecosystem restoration. PMID:27145622

  8. A Preliminary Study on Biological Activity of Wikstroemia chamaedaphne Meissn%河朔荛花农药生物活性初探

    Institute of Scientific and Technical Information of China (English)

    杨华; 田锐; 陈宏力

    2009-01-01

    [Objective] The insecticidal and antibacterial bioactivity of Wikstroemia chamaedaphne Meissn were screened and bioactive substances in it were separated and purified. [Method]The Wikstroemia chamaedaphne Meissn was conducted ultrasonic extraction in petroleum ether, ethyl acetate and methanol. The insecticidal activity of Wikstroemia chamaedaphne Meissn to Mythimna separata walker and aphid were determined. The antibacterial activity of Wikstroemia chamaedaphne Meissn to Fusarium graminearu, Glomerella cingulata, F.oxysporium f.sp niveum, Alternaria solani and Fusarium oxysporium were also determined. The bioactivity-guided methods such as opencolumn chromatography and Pre-HPLC method were used to separate active components in petroleum ether extract from Wikstroemia chamaedaphne Meissn. [Result] When the concentration was 500 mg/L, 3 kinds of extracts from Wikstroemia chamaedaphne Meissn didn't show obvious antibacterial bioactivity to 5 kinds of test samples. When the concentration was 5%, petroleum ether extract show certain topical toxicity to aphids. The ethyl acetate extract showed certain antifeedant activity to 3rd instar Larvae of Mythimna separata Walker. The fraction F4 of petroleum ether extract possessed highest topical toxicity to aphids and the lethality was 60.00%.[Conclusion] Wikstroemia chamaedaphne Meissn contained many insecticidal constituents whose active parts and mechanism were needed further researches.

  9. The kinase regulator mob1 acts as a patterning protein for stentor morphogenesis.

    Directory of Open Access Journals (Sweden)

    Mark M Slabodnick

    2014-05-01

    Full Text Available Morphogenesis and pattern formation are vital processes in any organism, whether unicellular or multicellular. But in contrast to the developmental biology of plants and animals, the principles of morphogenesis and pattern formation in single cells remain largely unknown. Although all cells develop patterns, they are most obvious in ciliates; hence, we have turned to a classical unicellular model system, the giant ciliate Stentor coeruleus. Here we show that the RNA interference (RNAi machinery is conserved in Stentor. Using RNAi, we identify the kinase coactivator Mob1--with conserved functions in cell division and morphogenesis from plants to humans-as an asymmetrically localized patterning protein required for global patterning during development and regeneration in Stentor. Our studies reopen the door for Stentor as a model regeneration system.

  10. Protozoan Fauna and Abundance in Aeration Tanks of Three Municipal Wastewater Treatment Plants in the Eastern Cape Province of South Africa

    Science.gov (United States)

    Sibewu, M.; Momba, M. N. B.; Okoh, A. L.

    This study focuses on the assessment of the protozoan fauna and abundance in the mixed liquors of aeration tanks of the three municipal wastewater treatment plants located in Fort Beaufort, Dimbaza and East London in the Eastern Cape Province of South Africa and their implication to the production of effluents of good quality. The samples were collected between September and December 2005 and protozoa species were identified by direct microscopic observations at x400 magnification by comparison with existing protozoa gallery collections. A total of 68 protozoan genera made up of 44 ciliates, 16 flagellates and 8 others were identified in wastewater treatment plants. Although in all aerobic zones the average density of ciliates was 104 cells mL-1, which indicated that these plants were able to produce clear effluent of good quality, a better performance was found in Dimbaza and East London, which had total protozoan genera of 27 and 26, respectively.

  11. Assimilation of cellulose-derived carbon by microeukaryotes in oxic and anoxic slurries of an aerated soil.

    Science.gov (United States)

    Chatzinotas, Antonis; Schellenberger, Stefanie; Glaser, Karin; Kolb, Steffen

    2013-09-01

    Soil microeukaryotes may trophically benefit from plant biopolymers. However, carbon transfer from cellulose into soil microeukaryotes has not been demonstrated so far. Microeukaryotes assimilating cellulose-derived carbon in oxic and anoxic soil slurries were therefore examined by rRNA-based stable-isotope probing. Bacteriovorous flagellates and ciliates and, likely, mixotrophic algae and saprotrophic fungi incorporated carbon from supplemental [U-(13)C]cellulose under oxic conditions. A previous study using the same soil suggested that cellulolytic Bacteria assimilated (13)C of supplemental cellulose. Thus, it can be assumed that ciliates, cercozoa, and chrysophytes assimilated carbon by grazing upon and utilizing metabolic products of Bacteria that hydrolyzed cellulose in the soil slurries. PMID:23851095

  12. Quantitative study of Trichodina heterodentata (Ciliophora: Mobilia infrapopulations infesting tadpoles of a Brazilian endemic toad Rhinella pombali (Anura: Bufonidae

    Directory of Open Access Journals (Sweden)

    Noemi M. Fernandes

    2011-12-01

    Full Text Available In this work we investigated the quantitative aspects of the relationship between Rhinella pombali (Baldissera, Caramaschi & Haddad, 2004 tadpoles and their trichodinid ectoparasites. Specimens were collected from a small stream located at an agricultural area between rainforest fragments in southeastern Brazil. A total of 80 tadpoles were investigated. Trichodina heterodentata Duncan, 1977 was the only trichodinid ciliate species recovered. All tadpoles were naturally infested by T. heterodentata with a mean intensity of 695.14 ± 33.33 trichodinid ciliates per tadpole. A positive correlation was observed between the intensity of the infestation and tadpole weight. Intensity of infestation did not significantly influence mean trichodinid diameter in the populations studied. This is the first study investigating density-dependent effects in interspecific interactions between trichodinids and anurans.

  13. Hydrodynamic interactions of cilia on a spherical body

    CERN Document Server

    Nasouri, Babak

    2015-01-01

    Microorganisms develop coordinated beating patterns on surfaces lined with cilia known as metachronal waves. For a chain of cilia attached to a flat ciliate, it has been shown that hydrodynamic interactions alone can lead the system to synchronize. However, several microorganisms possess a curve shaped ciliate body and so to understand the effect of this geometry on the formation of metachronal waves, we evaluate the hydrodynamic interactions of cilia near a large spherical body. Using a minimal model, we show that for a chain of cilia around the sphere, the natural periodicity in the geometry leads the system to synchronize. We also report an emergent wave-like behavior when an asymmetry is introduced to the system.

  14. The impact of the fungicide fenpropimorph (Corbel) on bacterivorous and fungivorous protozoa in soil

    DEFF Research Database (Denmark)

    Ekelund, Flemming

    1999-01-01

    concentrations increasing from 0 to 60mgL-1. Naked amoebae and ciliates were present at all fenpropimorph concentrations. The 50-mg soil portions initially contained 19×103 heterotrophic flagellates, 14×103 naked amoebae and about 5 ciliates. The presence of the two latter groups even at concentrations of 60mg...... systems with glucose only; however, soil respiration was significantly impeded in microcosm systems with a low pesticide content and stimulated in systems with a high pesticide content. 4. Bacterivorous protozoa (naked amoebae and heterotrophic flagellates) were affected at all tested concentrations (074......1. The ability of indigenous soil protozoa to survive and multiply when exposed to various concentrations of the fungicide fenpropimorph was investigated. The number of protozoan taxa in relation to biocide concentration was examined in enrichment cultures. The population dynamics of bacterivorous...

  15. Treatment of industrial effluents by a continuous system: electrocoagulation--activated sludge.

    Science.gov (United States)

    Moisés, Tejocote-Pérez; Patricia, Balderas-Hernández; Barrera-Díaz, C E; Gabriela, Roa-Morales; Natividad-Rangel, Reyna

    2010-10-01

    A continuous system electrocoagulation--active sludge was designed and built for the treatment of industrial wastewater. The system included an electrochemical reactor with aluminum electrodes, a clarifier and a biological reactor. The electrochemical reactor was tested under different flowrates (50, 100 and 200 mL/min). In the biological reactor, the performance of different cultures of active sludge was assessed: coliform bacterial, ciliate and flagellate protozoa and aquatic fungus. Overall treatment efficiencies of color, turbidity and COD removal were 94%, 92% and 80%, respectively, under optimal conditions of 50 mL/min flowrate and using ciliate and flagellate protozoa. It was concluded that the system was efficient for the treatment of industrial wastewater. PMID:20570506

  16. Different Cell Types In the Lower Respiratory Tract of the Reindeer (Rangifer tarandus tarandus L. - A Transmission Electron Microscopical Study

    Directory of Open Access Journals (Sweden)

    Seppo A.m. Saari

    1997-02-01

    Full Text Available The epithelium of the trachea and distal airways of 12 healthy adult reindeer were studied with transmission electron microscopy. The ultrastructure of the reindeer respiratory tract corresponded to the findings of previous investigators studying other mammalian species. The epithelium of the trachea and bronchi, down to the level of the distal bronchioli, was composed of three main types of cell: ciliated, goblet, and basal. In the distal brochioli, non-ciliated cells similar to those known as Clara cells were predominant. Numerous electron-dense granules and the cell organelle pattern resembled the Clara cell type observed in laboratory rodents, rabbit, sheep, pig, horse, and llama. Pneumocyte 1 and pneumocyte 2 cells were readily identified in the alveoli. The pneumocyte 2 cells possessed short microvilli and granules with lamellar content. Micropinocytotic vesicles were very numerous in the alveolar wall, and a small number of alveolar macrophages occasionally seen in the alveolar lumen.

  17. Carnivorous planktonic Difflugia (Protista, Amoebina Testacea) and their predators.

    Science.gov (United States)

    Han, Bo-Ping; Wang, Tian; Xu, Lei; Lin, Qiu Qi; Jinyu, Zhang; Dumont, Henri J

    2011-08-01

    Four planktonic species of Difflugia co-occurring in a south Chinese reservoir were found to be carnivorous, but the diet was widest in the largest species (D. tuberspinifera) and narrowest in the smallest (D. hydrostatica). It included rotifers, ciliates, dinoflagellates, floating eggs, and small particles associated with organic debris. Scavenging and cannibalism were also observed. Species with a collared test (D. biwae, D. mulanensis) showed a form of suction-feeding, while species with teeth on the pseudostome used these, together with their pseudopods, as "inverted crown corks", providing leverage for opening the lorica of their (rotifer) prey. Predators of Difflugia included cyclopoid copepods. In addition, the rotifers Asplanchna priodonta, Ploesoma hudsoni and, occasionally, big ciliates (Stentor sp.) all ingested their prey as a whole. PMID:21632222

  18. Study on the actives sludge present in the La Golondrina's WWTP; Caracterizacion del fango activo presente en el tratamiento biologico de la EDAR de La Golondrina

    Energy Technology Data Exchange (ETDEWEB)

    Marin Galvin, R.; Rojas Moreno, J.

    2010-07-01

    Active sludge on the La Golondrina's WWTP (Emacsa-Cordoba) showed an average of total recount of 15x10{sup 6} ind/ml. The majority functional group present in the sludge was that of the Sessile Ciliates (70% over total). Thiothrix was the dominant filamentous organisms detected while were almost detected Sphaerotilus natans, Microthrix and the 1863 Type. the increase of temperature of water was linked to a higher values of the total recount as well as with the presence of Rizopodon. In this way, the higher exploitation yielding were obtained with values of the total recount between 7 and 20 x 10{sup 6} ind/ml and Sessile Ciliates amount higher than 60%. Finally, filamentous organisms are well controlled by the anaerobic selection system installed in the plant, which operates with values of SVI of 75 ml (average). (Author) 12 refs.

  19. Diagnosis of foregut and tailgut cysts by endosonographically guided fine-needle aspiration.

    Science.gov (United States)

    Hall, Diane A; Pu, Robert T; Pang, Yijun

    2007-01-01

    Foregut, hindgut, and tailgut cysts are uncommon developmental anomalies. Clinical and radiological diagnosis can present many challenges, especially in adult patients or when the lesions are in unique locations. Thus, diagnosis has traditionally been provided upon surgical resection. We describe the diagnoses of a gastric foregut cyst and a retrorectal tailgut cyst by endosonographically guided fine-needle aspiration in two adults. The common cytologic features of the specimens are ciliated epithelial cells, proteinaceous material with degenerated debris, histiocytes, and benign appearing epithelium of squamous and/or gastrointestinal type that lack cytologic atypia. The identification of ciliated columnar cells is the key finding. Cytologic diagnosis via endosonographically guided fine-needle aspiration of foregut/hindgut cyst is accurate and less traumatic than surgical biopsies. PMID:17173292

  20. Fate of pathogenic Bacillus cereus spores after ingestion by protist grazers

    DEFF Research Database (Denmark)

    Winding, Anne; Santos, Susana; Hendriksen, Niels Bohse; Jakobsen, Hans

    evolution of Bacillus cereus group bacteria (e.g. B. cereus, B. anthracis, B. thuringiensis) as a pathogen. It has been hypothesized that the spore stage protects against digestion by predating protists. Indeed, B. thuringiensis spores have been shown to be readily ingested by ciliated protists but failed...... to be digested (Manasherob et al 1998 AEM 64:1750-). Here we report how diverse protist grazers grow on both vegetative cells and spores of B. cereus and how the bacteria survive ingestion and digestion, and even proliferate inside the digestive vacuoles of ciliated protists. The survival ability of...... B. cereus was initially investigated in microcosms inoculated with pure cultures of the protists Acanthamoeba castellanii, Tetrahymena pyriformis and Cercomonas sp. as grazers. Individual protist cultures were fed with fluorescently labelled (CellTracker™RedCMTPX) B. cereus spores or vegetative...

  1. Kontinuierliche Co-Kultur von Tetrahymena thermophila und Pseudomonas putida in einem Bioreaktor

    OpenAIRE

    Hauptmann, Ulla

    2000-01-01

    Im Rahmen der vorliegenden Arbeit wurde ein mikrobielles Ökosystem in einem kontinuierlich betriebenen gerührten Bioreaktor (CSTR) im Labormaßstab etabliert und seine Wachstumskinetik untersucht. In diesem in vitro Räuber-Beute-System wurden der Ciliat Tetrahymena thermophila und das Bakterium Pseudomonas putida über einen Zeitraum von mehr als 400 Stunden gemeinsam kultiviert. Die Interaktion von Bakterien und Protozoen stellt einen elementaren Prozess in der Ökologie nahezu jedes G...

  2. Metaplastic changes of nasal respiratory epithelium in rats exposed to hexamethylphosphoramide (HMPA) by inhalation.

    OpenAIRE

    K. P. Lee(University of Tokyo); Trochimowicz, H. J.

    1982-01-01

    Rats exposed by inhalation to hexamethylphosphoramide (HMPA) at concentrations of 50, 100, 400, and 4000 parts per billion (ppb) for 6-24 months revealed nasal tumors and squamous metaplasia with inflammation in the nasal epithelium, but no changes were observed at 10 ppb. The ciliated cells were most susceptible to HMPA, showing degenerative changes, with abnormal cilia and extensive deciliation. The desquamated nasal epithelium was repaired initially by undifferentiated mucus or microvillou...

  3. Identification of antigenically related polypeptides at centrioles and basal bodies.

    OpenAIRE

    Lin, W.; Fung, B.; Shyamala, M; Kasamatsu, H

    1981-01-01

    An antigen localized at the centriolar region has been identified by indirect immunofluorescence studies in African green monkey kidney, human, hamster, rat, and mouse cells. The antigen consists of two polypeptides of 14,000 and 17,000 daltons. A related antigen is also present at the basal body region in ciliated cells from chicken, cat, mouse, pig, steer, and rabbit trachea and from rabbit fimbria. Immunoelectron microscopy shows that the immunoreactive antigen is indeed located in the reg...

  4. Worms With a Single Functional Sensory Cilium Generate Proper Neuron-Specific Behavioral Output

    OpenAIRE

    Senti, Gabriele; Ezcurra, Marina; Löbner, Jana; Schafer, William R.; Swoboda, Peter

    2009-01-01

    Studying the development and mechanisms of sensory perception is challenging in organisms with complex neuronal networks. The worm Caenorhabditis elegans possesses a simple neuronal network of 302 neurons that includes 60 ciliated sensory neurons (CSNs) for detecting external sensory input. C. elegans is thus an excellent model in which to study sensory neuron development, function, and behavior. We have generated a genetic rescue system that allows in vivo analyses of isolated CSNs at both c...

  5. Paradidymis – Fact/Fiction and its Significance

    OpenAIRE

    M. Raghavendran; Venugopal, A.; V. Ranjit; Vinay N. Kaushik

    2016-01-01

    A 30-year old infertile male was admitted for microsurgical sub inguinal varicocelectomy. Intraoperatively, two tubular structures of the caliber of neighboring veins were noted. They were distinct from the vas, which was carefully preserved. Histopathology revealed varicose veins along with two convoluted tubular structures lined by ciliated pseudo-stratified epithelium. There was an incomplete thin muscle coat. The lumina were irregular and contained no spermatozoa (Fig. 1). These structure...

  6. Mechanics of membrane-cytoskeleton attachment in Paramecium

    OpenAIRE

    Campillo, Clément; Jerber, Julie; Fisch, Cathy; Simoes-Betbeder, Maria; Dupuis-Williams, Pascale; Nassoy, Pierre; Sykes, Cécile

    2012-01-01

    International audience In this paper we assess the role of the protein MKS1 (Meckel syndrome type 1) in the cortical membrane mechanics of the ciliated protist Paramecium. This protein is known to be crucial in the process of cilium formation, and we investigate its putative role in membrane-cytoskeleton attachment. Therefore, we compare cells where the gene coding for MKS1 is silenced to wild-type cells. We found that scanning electron microscopy observation of the cell surface reveals a ...

  7. Huge Bilateral Paramesonephric Cysts in a 25 year old Nulliparous woman

    OpenAIRE

    Sagili, Haritha; Krishnan, Manikandan; Dasari, Papa

    2013-01-01

    Paraovarian cysts are uncommon adnexal masses which are usually asymptomatic. We describe a case of bilateral huge paramesonephric cysts in a nulliparous woman. A 25-year-old lady presented with abdominal distension for one year duration. Examination and imaging revealed large abdominopelvic cystic masses with no solid areas or septations. Intraoperatively there were huge bilateral paraovarian cysts which were excised. Histopathology revealed low cuboidal to ciliated columnar epithelium with ...

  8. Histochemical study of the oviducal gland and analysis of the sperm storage tubules of Mustelus schmitti Springer, 1939 (Chondrichthyes, Triakidae)

    OpenAIRE

    Fernanda Gabriela Elías

    2015-01-01

    Abstract: The paired oviducal glands of immature and mature females of Mustelus schmitti were examined macro and microscopically. Findings indicate that these glands possessed the same zonation as in most chondrichthyans from anterior to posterior: club, papillary, baffle and terminal zones. The whole gland is composed by simple tubular glands that connect with transverse grooves all along the organ. The club zone presents a typical indian club shape with a simple columnar and ciliated epithe...

  9. Survival of Campylobacter jejuni in Waterborne Protozoa

    OpenAIRE

    Snelling, W. J.; McKenna, J. P.; Lecky, D. M.; Dooley, J. S. G.

    2005-01-01

    The failure to reduce the Campylobacter contamination of intensively reared poultry may be partially due to Campylobacter resisting disinfection in water after their internalization by waterborne protozoa. Campylobacter jejuni and a variety of waterborne protozoa, including ciliates, flagellates, and alveolates, were detected in the drinking water of intensively reared poultry by a combination of culture and molecular techniques. An in vitro assay showed that C. jejuni remained viable when in...

  10. Necrotizing lung infection caused by the protozoan Balantidium coli

    OpenAIRE

    Sharma, Sat; Harding, Godfrey

    2003-01-01

    Balantidium coli, a ciliated protozoan, is well known to cause intestinal infection in humans. Extraintestinal spread to the peritoneal cavity and genitourinary tract has rarely been reported. There have also been a few cases of lung involvement from this parasite. A case of B coli causing a thick-walled right upper lobe cavity in an organic farmer who had contact with aerosolized pig manure is reported. Bronchoalveolar lavage fluid examined for ova and parasite revealed trophozoites of B col...

  11. Effects of formaldehyde on the frog's mucociliary epithelium as a surrogate to evaluate air pollution effects on the respiratory epithelium

    OpenAIRE

    C. Fló-Neyret; G. Lorenzi-Filho; M. Macchione; M.L.B. Garcia; Saldiva, P. H. N.

    2001-01-01

    The increasing use of alcohol as an alternative fuel to gasoline or diesel can increase emission of formaldehyde, an organic gas that is irritant to the mucous membranes. The respiratory system is the major target of air pollutants and its major defense mechanism depends on the continuous activity of the cilia and the resulting constant transportation of mucous secretion. The present study was designed to evaluate the effects of formaldehyde on the ciliated epithelium through a relative large...

  12. Highly Active Microbial Communities in the Ice and Snow Cover of High Mountain Lakes

    OpenAIRE

    Felip, M.; Sattler, B.; Psenner, R.; Catalan, J

    1995-01-01

    An exploratory study carried out in Pyrenean and Alpine lakes shows that a rich, active microbial community lives in the slush layers of the winter cover of such lakes in spite of the low temperature and the seasonal occurrence of the habitat. Bacteria were very diverse in morphology, with filaments reaching up to 100 (mu)m long; flagellates, both autotrophic (chrysophytes, cryptophytes, dinoflagellates, and volvocales) and heterotrophic, and ciliates were abundant, reaching biovolume values ...

  13. Effect of substrate on periphyton communities and relationships among food web components in shallow hypertrophic lake

    Directory of Open Access Journals (Sweden)

    Tomasz Mieczan

    2012-07-01

    Full Text Available We studied the role of natural (common reed and artificial substrata (bamboo in structuring the abundance and taxonomic composition of periphyton assemblages. Investigations were conducted in a shallow, hypertrophic lake situated in the area of Polesie Lubelskie (Eastern Poland. Periphyton communities (algae, ciliates, small metazoa and chironomids on both types of substratum were sampled monthly, from May to November of 2007. Water samples for chemical analysis were collected together with biological samples. We selected the group of ten environmental variables which are the most important in determining the habitat conditions in highly eutrophic lakes: temperature, Secchi disc visibility, conductivity, dissolved oxygen, periphytic chlorophyll-a, N-NO3, N-NH4, TP, P-PO4 and total organic carbon (TOC. The abundances of periphytic algae, ciliates, metazoa and chironomids were significantly affected by season and substrate. On natural substrata, in all studied months, periphyton communities showed higher abundances. The results of PCA analysis confirmed the distinction between periphyton communities on natural and artificial substrata. The Monte Carlo permutation test showed that the periphyton communities on common reed were the most significantly affected by temperature, N-NO3, Secchi disc visibility and TOC. The communities on artificial substrata were significantly influenced by temperature, P-PO4 and TOC. On natural substrata biomass of periphytic algae was significantly negatively correlated with abundances of all groups of potential grazers (ciliates, metazoa, chironomids. On artificial substrata the relations between components of periphytic food web were stronger; correlation coefficients between algae, protists and chironomids were significant at P<0.01. The results of analysis indicate that periphytic algae can play an important role as food source for higher trophic levels. These interactions are less significant on natural (reed

  14. Subtraction by addition: domesticated transposases in programmed DNA elimination

    OpenAIRE

    Motl, Jason A.; Chalker, Douglas L.

    2009-01-01

    The ciliate Paramecium tetraurelia must eliminate ∼60,000 short sequences from its genome to generate uninterrupted coding sequences in its somatic macronucleus. In this issue of Genes & Development, Baudry and colleagues (pp. 2478–2483) identify the protein that excises these noncoding sequences: a domesticated piggyBac transposase that has been adapted to remove what are likely the remnants of transposon insertions. This new study reveals how addition of a transposase to small RNA-directed ...

  15. Efficiency of swimming of micro-organism and singularity in shape space

    CERN Document Server

    Kawamura, M

    1996-01-01

    Micro-organisms can be classified into three different types according to their size. We study the efficiency of the swimming of micro-organism in two dimensional fluid as a device for helping the explanation of this hierarchy in the size. We show that the efficiency of flagellate becomes unboundedly large, whereas that of ciliate has the upper bound. The unboundedness is related to the curious feature of the shape space, that is, a singularity at the basic shape of flagellate.

  16. Microbial Communities Associated with Healthy and White Syndrome-Affected Echinopora lamellosa in Aquaria and Experimental Treatment with the Antibiotic Ampicillin

    OpenAIRE

    Smith, David; Leary, Peter; Craggs, Jamie; Bythell, John; Sweet, Michael

    2015-01-01

    Prokaryotic and ciliate communities of healthy and aquarium White Syndrome (WS)-affected coral fragments were screened using denaturing gradient gel electrophoresis (DGGE). A significant difference (R = 0.907, p < 0.001) in 16S rRNA prokaryotic diversity was found between healthy (H), sloughed tissue (ST), WS-affected (WSU) and antibiotic treated (WST) samples. Although 3 Vibrio spp were found inWS-affected samples, two of these species were eliminated following ampicillin treatment, yet l...

  17. The bifunctional dihydrofolate reductase thymidylate synthase of Tetrahymena thermophila provides a tool for molecular and biotechnology applications

    OpenAIRE

    Tiedtke Arno; Bockau Ulrike; Herrmann Lutz; Hartmann Marcus WW; Weide Thomas

    2006-01-01

    Abstract Background Dihydrofolate reductase (DHFR) and thymidylate synthase (TS) are crucial enzymes in DNA synthesis. In alveolata both enzymes are expressed as one bifunctional enzyme. Results Loss of this essential enzyme activities after successful allelic assortment of knock out alleles yields an auxotrophic marker in ciliates. Here the cloning, characterisation and functional analysis of Tetrahymena thermophila's DHFR-TS is presented. A first aspect of the presented work relates to dest...

  18. From zebrafish heart jogging genes to mouse and human orthologs: using Gene Ontology to investigate mammalian heart development

    OpenAIRE

    Khodiyar, V. K.; Howe, D.; Talmud, P.J.; Breckenridge, R.; Lovering, R. C.

    2014-01-01

    For the majority of organs in developing vertebrate embryos, left-right asymmetry is controlled by a ciliated region; the left-right organizer node in the mouse and human, and the Kuppfer's vesicle in the zebrafish. In the zebrafish, laterality cues from the Kuppfer's vesicle determine asymmetry in the developing heart, the direction of 'heart jogging' and the direction of 'heart looping'.  'Heart jogging' is the term given to the process by which the symmetrical zebrafish heart tube is displ...

  19. In Vivo NMR Metabolic Profiling of Fabrea salina Reveals Sequential Defense Mechanisms against Ultraviolet Radiation

    OpenAIRE

    Marangoni, Roberto; Paris, Debora; Melck, Dominique; Fulgentini, Lorenzo; Colombetti, Giuliano; Motta, Andrea

    2011-01-01

    Fabrea salina is a hypersaline ciliate that is known to be among the strongest ultraviolet (UV)-resistant microorganisms; however, the molecular mechanisms of this resistance are almost unknown. By means of in vivo NMR spectroscopy, we determined the metabolic profile of living F. salina cells exposed to visible light and to polychromatic UV-B + UV-A + Vis radiation for several different exposure times. We used unsupervised pattern-recognition analysis to compare these profiles and discovered...

  20. Larval spicules, cilia, and symmetry as remnants of indirect development in the direct developing sea urchin Heliocidaris erythrogramma.

    Science.gov (United States)

    Emlet, R B

    1995-02-01

    Nonfeeding larvae of the echinoid Heliocidaris erythrogramma were raised in culture and examined for expression of a larval skeleton and for the arrangement of the ciliated band. Opaque larvae were fixed, cleared, and examined under polarized light for evidence of calcification. By 35 hr after fertilization (at 22 degrees C), a pair of triradiate spicules was present at the posterior end of the larvae. Each member of this pair formed a fenestrated spicule as it grew laterally. This pair and another pair which formed subsequently, were arranged across a plane of bilateral symmetry orthagonal to the juvenile oral aboral axis. These paired larval spicules can be identified as reduced expressions of postoral and posterodorsal rods found in plutei, and their expression indicates that the juvenile rudiment of H. erythrogramma forms on the left side and that larval body axes are conserved in this modified larva. By 44 hr the ciliated band formed as an incomplete transverse loop of three segments at the posterior end and on the dorsal surface of the ovoid larva. Cilia in these segments grew to lengths of 45-50 microns, longer than other swimming and feeding cilia reported for echinoderm larvae. Band segments are interpreted as expressions of epaulettes (specialized swimming bands) rather than the feeding ciliated band of the pluteus. The ciliated band segments and the larval spicules are both bilaterally symmetrical with respect to the same plane and indicate conserved larval bilateral symmetry despite the major asymmetry of the fates of cells on either side of this plane in their contribution to juvenile development. PMID:7875367

  1. Feeding behaviour of Centropages typicus in calm and turbulent conditions

    DEFF Research Database (Denmark)

    Caparroy, Philippe; Perez, M.T.; Carlotti, F.

    1998-01-01

    Feeding of the copepod Centropages typicus on the oligotrich ciliate Strombidium sulcatum was studied in the laboratory under controlled, measured conditions of grid generated small scale turbulence. High levels of turbulence, epsilon (kinetic energy dissipation sate) = 2.9 x 10(-2) to 3 x 10......, resulting in an increased proportion of time spent slow swimming in a 'helical' mode. Our results suggest that high levels of small scale turbulence substantially increase predation rates of cruising copepods...

  2. Environmental colour affects aspects of single-species population dynamics.

    OpenAIRE

    Petchey, O L

    2000-01-01

    Single-species populations of ciliates (Colpidium and Paramecium) experienced constant temperature or white or reddened temperature fluctuations in aquatic microcosms in order to test three hypotheses about how environmental colour influences population dynamics. (i) Models predict that the colour of population dynamics is tinged by the colour of the environmental variability. However, environmental colour had no effect on the colour of population dynamics. All population dynamics in this exp...

  3. Assessing Whether Alpha-Tubulin Sequences Are Suitable for Phylogenetic Reconstruction of Ciliophora with Insights into Its Evolution in Euplotids

    OpenAIRE

    Yi, Zhenzhen; Katz, Laura A.; Song, Weibo

    2012-01-01

    The current understanding of ciliate phylogeny is mainly based on analyses of a single gene, the small subunit ribosomal RNA (SSU-rDNA). However, phylogenetic trees based on single gene sequence are not reliable estimators of species trees, and SSU-rDNA genealogies are not useful for resolution of some branches within Ciliophora. Since congruence between multiple loci is the best tool to determine evolutionary history, we assessed the usefulness of alpha-tubulin gene, a protein-coding gene th...

  4. Micro and mesozooplankton composition during winter in Ushuaia and Golondrina Bays (Beagle Channel, Argentina)

    OpenAIRE

    Florencia Biancalana; María Sonia Barría de Cao; Mónica Susana Hoffmeyer

    2007-01-01

    The current paper analyses the micro and mesozooplankton in Ushuaia and Golondrina Bays, the first research on these plankton fractions of these areas in wintertime (August 2004). The number of microzooplankton and mesozooplankton taxa was higher in Ushuaia Bay than in Golondrina Bay. Aloricate ciliates predominated over tintinnids in microzooplankton and holoplankton over meroplankton in mesozooplankton in both bays. Ctenocalanus citer, Drepanopus forcipatus and Clausocalanus brevipes presen...

  5. A Domesticated PiggyBac Transposase Interacts with Heterochromatin and Catalyzes Reproducible DNA Elimination in Tetrahymena

    OpenAIRE

    Alexander Vogt; Kazufumi Mochizuki

    2013-01-01

    The somatic genome of the ciliated protist Tetrahymena undergoes DNA elimination of defined sequences called internal eliminated sequences (IESs), which account for ∼30% of the germline genome. During DNA elimination, IES regions are heterochromatinized and assembled into heterochromatin bodies in the developing somatic nucleus. The domesticated piggyBac transposase Tpb2p is essential for the formation of heterochromatin bodies and DNA elimination. In this study, we demonstrate that the activ...

  6. Digestive enzymes in ants (Hymenoptera: Formicidae) : a short review

    Czech Academy of Sciences Publication Activity Database

    Šustr, Vladimír; Schlick-Steiner, B.C.; Steiner, F. M.

    České Budějovice : Institute of Soil Biology BC AS CR, 2009, s. 157-161. ISBN 978-80-86525-13-6. [Contributions to Soil Zoology in Central Europe III. Central European Workshop on Soil Zoology /9./. České Budějovice (CZ), 17.04.2007-20.04.2007] Institutional research plan: CEZ:AV0Z60660521 Keywords : bark * ciliates * decaying wood mass Subject RIV: EH - Ecology, Behaviour

  7. Potential role of bacteria packaging by protozoa in the persistence and transmission of pathogenic bacteria

    OpenAIRE

    Alix M Denoncourt; Paquet, Valérie E.; Charette, Steve J.

    2014-01-01

    Many pathogenic bacteria live in close association with protozoa. These unicellular eukaryotic microorganisms are ubiquitous in various environments. A number of protozoa such as amoebae and ciliates ingest pathogenic bacteria, package them usually in membrane structures, and then release them into the environment. Packaged bacteria are more resistant to various stresses and are more apt to survive than free bacteria. New evidence indicates that protozoa and not bacteria control the packaging...

  8. Rumen protozoa in South African sheep with a summary of the worldwide distribution of sheep protozoa

    OpenAIRE

    Dirk Booyse; Burk A. Dehority

    2011-01-01

    Protozoa species were identified in rumen contents of four domestic sheep (Ovis aries) from South Africa. All animals were fed a forage diet which consisted of 50% lucerne and 50% teff hay. Ten new host records were identified, bringing the total number of species and forms observed in sheep in South Africa to 30. The occurrence and geographic distribution of ciliate protozoa in both domestic and wild sheep from around the world are summarised. It was found that 15 genera and 131 species...

  9. Kappe neurons, a novel population of olfactory sensory neurons

    OpenAIRE

    Ahuja, Gaurav; Nia, Shahrzad Bozorg; Zapilko, Veronika; Shiriagin, Vladimir; Kowatschew, Daniel; Oka, Yuichiro; Korsching, Sigrun I.

    2014-01-01

    Perception of olfactory stimuli is mediated by distinct populations of olfactory sensory neurons, each with a characteristic set of morphological as well as functional parameters. Beyond two large populations of ciliated and microvillous neurons, a third population, crypt neurons, has been identified in teleost and cartilaginous fishes. We report here a novel, fourth olfactory sensory neuron population in zebrafish, which we named kappe neurons for their characteristic shape. Kappe neurons ar...

  10. Modelling mucociliary clearance

    OpenAIRE

    Smith, D.J.; Gaffney, E.A.; Blake, J R

    2008-01-01

    Mathematical modelling of the fluid mechanics of mucociliary clearance (MCC) is reviewed and future challenges for researchers are discussed. The morphology of the bronchial and tracheal airway surface liquid (ASL) and ciliated epithelium are briefly introduced. The cilia beat cycle, beat frequency and metachronal coordination are described, along with the rheology of the mucous layer. Theoretical modelling of MCC from the late 1960s onwards is reviewed, and distinctions between ‘phenomenolog...

  11. Sex in Fungi

    OpenAIRE

    Ni, Min; Feretzaki, Marianna; Sun, Der Sheng; Wang, Xuying; Heitman, Joseph

    2011-01-01

    Sexual reproduction enables genetic exchange in eukaryotic organisms as diverse as fungi, animals, plants, and ciliates. Given its ubiquity, sex is thought to have evolved once, possibly concomitant with or shortly after the origin of eukaryotic organisms themselves. The basic principles of sex are conserved, including ploidy changes, the formation of gametes via meiosis, mate recognition, and cell-cell fusion leading to the production of a zygote. Although the basic tenants are shared, sex d...

  12. Histology of the mucosa of the oesophagogastric junction and the stomach in adult Rana perezi.

    OpenAIRE

    Gallego-Huidobro, J; Pastor, L M

    1996-01-01

    The histological structure of the frog digestive mucosa changes at the oesophagogastric junction. The pseudostratified ciliated mucosal epithelium of oesophageal type changes to a simple mucus-secreting epithelium of gastric type. The glands straighten and the muscularis mucosae develops as a complete layer. The muscularis increases in thickness. Unlike the mammalian stomach, in the frog the surface of the plicae forms convoluted ridges that delimit furrow-shaped pits. Two types of gastric gl...

  13. Non-invasive sources of cells with primary cilia from pediatric and adult patients

    OpenAIRE

    Ajzenberg, H.; Slaats, G.G.; Stokman, M.F.; Arts, H.H.; Logister, I; Kroes, H Y; Renkema, K.Y.; van Haelst, M. M.; Terhal, P.A.; van Rooij, I. A. L. M.; Keijzer-Veen, M.G.; Knoers, N V; Lilien, M.R.; Jewett, M A; Giles, R. H.

    2015-01-01

    BACKGROUND: Ciliopathies give rise to a multitude of organ-specific pathologies; obtaining relevant primary patient material is useful for both diagnostics and research. However, acquisition of primary ciliated cells from patients, particularly pediatric patients, presents multiple difficulties. Biopsies and blood samples are invasive, and patients (and their parents) may be reluctant to travel to medical centers, especially for research purposes. We sought to develop non-invasive methods of ...

  14. The Vomeronasal organ in Buffalo

    OpenAIRE

    M Abbasi

    2010-01-01

    This study was conducted to investigate anatomical and histological structure of vomeronasal organ in buffalo. To perform this, fifty one heads from buffalo were used. From anatomical point of view, the mean length of vno was 189±15 mm. This organ is encapsulated in an incomplete cartilaginous capsule. Concerning the histological structure, two different epithelium were lined the vno lumen; pseudostratified ciliated columnar epithelium in lateral wall and pseudostratified nonciliated c...

  15. The Vomeronasal organ in Buffalo

    Directory of Open Access Journals (Sweden)

    M. Abbasi

    2010-02-01

    Full Text Available This study was conducted to investigate anatomical and histological structure of vomeronasal organ in buffalo. To perform this, fifty one heads from buffalo were used. From anatomical point of view, the mean length of vno was 189±15 mm. This organ is encapsulated in an incomplete cartilaginous capsule. Concerning the histological structure, two different epithelium were lined the vno lumen; pseudostratified ciliated columnar epithelium in lateral wall and pseudostratified nonciliated columnar in medial wall.

  16. Assimilation of Cellulose-Derived Carbon by Microeukaryotes in Oxic and Anoxic Slurries of an Aerated Soil

    OpenAIRE

    Chatzinotas, Antonis; Schellenberger, Stefanie; Glaser, Karin; Kolb, Steffen

    2013-01-01

    Soil microeukaryotes may trophically benefit from plant biopolymers. However, carbon transfer from cellulose into soil microeukaryotes has not been demonstrated so far. Microeukaryotes assimilating cellulose-derived carbon in oxic and anoxic soil slurries were therefore examined by rRNA-based stable-isotope probing. Bacteriovorous flagellates and ciliates and, likely, mixotrophic algae and saprotrophic fungi incorporated carbon from supplemental [U-13C]cellulose under oxic conditions. A previ...

  17. Spirostomum spp. (Ciliophora, Protista), a suitable system for endocytobiosis research.

    Science.gov (United States)

    Fokin, S I; Schweikert, M; Brümmer, F; Görtz, H-D

    2005-04-01

    Among ciliate genera, only Paramecium and Euplotes species have been studied extensively as host organisms of bacterial endocytobionts. In this article, we show that members of the genus Spirostomum may also serve as a suitable system for endocytobiosis research. Two strains of Spirostomum minus (Heterotrichea, Ciliophora) collected in Germany and Italy, respectively, were found to harbor different types of bacterial infections. Bacteria of various sizes and shapes were observed in the cytoplasm or in the nuclei of the ciliates. The bacteria in the cytoplasm were either surrounded by a peribacterial membrane or lay naked. One of the bacterial species was found in the vicinity of the contractile fibrillar system (myonemes) of the ciliates. In rare cases, another type of bacteria was observed associated with mitochondria. The macronuclei of both the Italian and the German strains were crowded with endocytobionts. The endonuclear bacteria in the two S. minus strains differed with respect to their cytoplasmic structures but they were of similar size and both were rod shaped. According to the results of in situ hybridization, the endonuclear bacteria of the Italian strain belong to the subgroup of alphaproteobacteria, whereas the bacteria associated with the fibrillar system appeared to be gram-positive bacteria with high G+C content. While both the German and the Italian strains were found to permanently maintain their endocytobionts, they were at least partly colonized by different bacteria. This is taken as an indication that geographically separated populations of ciliates may be stably infected by different endocytobionts, possibly due to different ecological conditions. For S. minus and S. ambiguum a total of 7 different bacterial endocytobionts have now been recorded. We recommend the members of the genus Spirostomum as a suitable system for endocytobiosis research. PMID:15868216

  18. Squelette membranaire chez Paramecium tetraurelia : caractérisation d'une nouvelle famille multigénique et analyse par les approches GFP et RNAi

    OpenAIRE

    Pomel, Sébastien

    2005-01-01

    The cortex of most ciliated protozoa encloses a membrane skeleton including the epiplasm, a sub-membranous layer extending underneath the cytoplasmic face of the inner alveolar membrane. In Paramecium, epiplasmic scales are centered around ciliary units and are composed of a complex set of proteins named epiplasmins. In the first part of this study, using the sequence of two epiplasmins (EPI-1 and EPI-2), we have contributed to the annotation of Paramecium tetraurelia macronuclear genome and ...

  19. In vitro generated antibodies specific for telomeric guanine-quadruplex DNA react with Stylonychia lemnae macronuclei

    OpenAIRE

    Schaffitzel, Christiane; Berger, Imre; Postberg, Jan; Hanes, Jozef; Lipps, Hans J; Plückthun, Andreas

    2001-01-01

    Most eukaryotic telomeres contain a repeating motif with stretches of guanine residues that form a 3′-terminal overhang extending beyond the telomeric duplex region. The telomeric repeat of hypotrichous ciliates, d(T4G4), forms a 16-nucleotide 3′-overhang. Such sequences can adopt parallel-stranded as well as antiparallel-stranded quadruplex conformations in vitro. Although it has been proposed that guanine-quadruplex conformations may have important cellular roles including telomere function...

  20. Immunohistochemical study of metalloproteinases and their tissue inhibitors in the lungs of patients with diffuse alveolar damage and idiopathic pulmonary fibrosis.

    OpenAIRE

    Hayashi, T.; Stetler-Stevenson, W. G.; Fleming, M. V.; Fishback, N.; Koss, M. N.; Liotta, L A; Ferrans, V. J.; Travis, W. D.

    1996-01-01

    Immunohistochemical and confocal microscopic studies of the localization of matrix metalloproteinases (MMPs), their tissue inhibitors (TIMPs), and type IV collagen were made in lung tissues from patients with normal pulmonary histology (n = 3), diffuse alveolar damage (n = 14), and idiopathic pulmonary fibrosis (n = 12). Pretreatment with pepsin revealed otherwise undetectable MMP- and TIMP-immunoreactive sites. In normal lung, MMP-2, MMP-9, TIMP-1, and TIMP-2 were localized in ciliated cells...

  1. Streptococcus pneumoniae-Induced Inhibition of Rat Ependymal Cilia Is Attenuated by Antipneumolysin Antibody

    OpenAIRE

    Hirst, Robert A; Mohammed, Bashir J.; Mitchell, Timothy J.; Andrew, Peter W.; O'Callaghan, Christopher

    2004-01-01

    Ciliated ependymal cells line the ventricular surfaces and aqueducts of the brain. In ex vivo experiments, pneumolysin caused rapid inhibition of the ependymal ciliary beat frequency and caused ependymal cell disruption. Wild-type pneumococci and pneumococci deficient in pneumolysin caused ciliary slowing, but penicillin lysis of wild-type, not pneumolysin-deficient, pneumococci increased the extent of ciliary inhibition. This effect was abolished by antipneumolysin antibody. Ependymal ciliar...

  2. Tubulin Tyrosine Ligase-like Genes ttll3 and ttll6 Maintain Zebrafish Cilia Structure and Motility*

    OpenAIRE

    Pathak, Narendra; Austin, Christina A.; Drummond, Iain A.

    2011-01-01

    Tubulin post-translational modifications generate microtubule heterogeneity and modulate microtubule function, and are catalyzed by tubulin tyrosine ligase-like (TTLL) proteins. Using antibodies specific to monoglycylated, polyglycylated, and glutamylated tubulin in whole mount immunostaining of zebrafish embryos, we observed distinct, tissue-specific patterns of tubulin modifications. Tubulin modification patterns in cilia correlated with the expression of ttll3 and ttll6 in ciliated cells. ...

  3. Extrapolation of toxic indices among test objects

    OpenAIRE

    Tichý, Miloň; Rucki, Marián; Roth, Zdeněk; Hanzlíková, Iveta; Vlková, Alena; Tumová, Jana; Uzlová, Rút

    2010-01-01

    Oligochaeta Tubifex tubifex, fish fathead minnow (Pimephales promelas), hepatocytes isolated from rat liver and ciliated protozoan are absolutely different organisms and yet their acute toxicity indices correlate. Correlation equations for special effects were developed for a large heterogeneous series of compounds (QSAR, quantitative structure-activity relationships). Knowing those correlation equations and their statistic evaluation, one can extrapolate the toxic indices. The reason is that...

  4. Prevalence of Troglodytella abrassarti Brumpt and Joyeux, 1912 in Wild Chimpanzees (Pan troglodytes schweinfurthii) at Mahale Mountains National Park in Western Tanzania

    OpenAIRE

    T Kaur; Singh, J; Lindsay, D. S.

    2010-01-01

    We examined stool samples for trophozoites of the entodiniomorphid ciliate Troglodytella abrassarti Brumpt and Joyeux, 1912, from a habituated group of chimpanzees (Pan troglodytes schweinfurthii) at NI abate Mountains National Park in western Tanzania. In our study, fresh fecal samples from identified individuals were collected immediately after defecation and fixed in 10% formalin. In total, 52 samples from 38 chimpanzees (61% of 62 chimpanzees in the group) were examined using a direct sme...

  5. The floral scales in Hellmuthia (Cyperaceae, Cyperoideae) and Paramapania (Cyperaceae, Mapanioideae): An ontogenetic study

    OpenAIRE

    VRIJDAGHS, A; GOETGHEBEUR, P.; SMETS, E.; Muasya, A

    2006-01-01

    Background and Aims In 1976 the monotypic genus Hellmuthia was placed in the Hypolytreae s.l., but was subsequently ascribed to the Mapanioideae, tribe Chrysitricheae, mainly because of the presence in Hellmuthia of two lateral, mapanioid-like floral scales with ciliated keels, the anatomy of the nutlet, the embryo and the inflorescence. Recently, based on cladistic analyses and supported by pollen ontogenetic evidence, Hellmuthia was transferred to a Cyperaceae, tribe Cypereae, clade mainly ...

  6. Studies on the impact of food web effects on nitrification in aquatic sediments

    OpenAIRE

    Prast, Mario

    2007-01-01

    Nitrification is an important biogeochemical pathway in the upper, oxic layer of aquatic sediments and is predominantly accomplished by two groups of chemolithotrophic nitrifying bacteria. While these bacteria have been subject to numerous autecological studies before, they have rarely been regarded as part of food webs, in which they have to compete with other organisms for nutrients and substrates and in which they are prey to other organisms. The impact of ciliates as important bacterial g...

  7. Phosphorylation-Dependent Targeting of Tetrahymena HP1 to Condensed Chromatin.

    Science.gov (United States)

    Yale, Katerina; Tackett, Alan J; Neuman, Monica; Bulley, Emily; Chait, Brian T; Wiley, Emily

    2016-01-01

    The evolutionarily conserved proteins related to heterochromatin protein 1 (HP1), originally described in Drosophila, are well known for their roles in heterochromatin assembly and gene silencing. Targeting of HP1 proteins to specific chromatin locales is mediated, at least in part, by the HP1 chromodomain, which binds to histone H3 methylated at lysine 9 that marks condensed regions of the genome. Mechanisms that regulate HP1 targeting are emerging from studies with yeast and metazoans and point to roles for posttranslational modifications. Here, we report that modifications of an HP1 homolog (Hhp1) in the ciliate model Tetrahymena thermophila correlated with the physiological state and with nuclear differentiation events involving the restructuring of chromatin. Results support the model in which Hhp1 chromodomain binds lysine 27-methylated histone H3, and we show that colocalization with this histone mark depends on phosphorylation at a single Cdc2/Cdk1 kinase site in the "hinge region" adjacent to the chromodomain. These findings help elucidate important functional roles of reversible posttranslational modifications of proteins in the HP1 family, in this case, regulating the targeting of a ciliate HP1 to chromatin regions marked with methylated H3 lysine 27. IMPORTANCE Compacting the genome to various degrees influences processes that use DNA as a template, such as gene transcription and replication. This project was aimed at learning more about the cellular mechanisms that control genome compaction. Posttranslational modifications of proteins involved in genome condensation are emerging as potentially important points of regulation. To help elucidate protein modifications and how they affect the function of condensation proteins, we investigated the phosphorylation of the chromatin protein called Hhp1 in the ciliated protozoan Tetrahymena thermophila. This is one of the first functional investigations of these modifications of a nonhistone chromatin

  8. Surface antigen cross-linking triggers forced exit of a protozoan parasite from its host.

    OpenAIRE

    Clark, T. G.; Lin, T. L.; Dickerson, H. W.

    1996-01-01

    We used the common fish pathogen Ichthyophthirius multifiliis as a model for studying interactions between parasitic ciliates and their vertebrate hosts. Although highly pathogenic, Ichthyophthirius can elicit a strong protective immune response in fish after exposure to controlled infections. To investigate the mechanisms underlying host resistance, a series of passive immunization experiments were carried out using mouse monoclonal antibodies against a class of surface membrane proteins, kn...

  9. Biased assembly of the nuclear pore complex is required for somatic and germline nuclear differentiation in Tetrahymena.

    Science.gov (United States)

    Iwamoto, Masaaki; Koujin, Takako; Osakada, Hiroko; Mori, Chie; Kojidani, Tomoko; Matsuda, Atsushi; Asakawa, Haruhiko; Hiraoka, Yasushi; Haraguchi, Tokuko

    2015-05-01

    Ciliates have two functionally distinct nuclei, a somatic macronucleus (MAC) and a germline micronucleus (MIC) that develop from daughter nuclei of the last postzygotic division (PZD) during the sexual process of conjugation. Understanding this nuclear dimorphism is a central issue in ciliate biology. We show, by live-cell imaging of Tetrahymena, that biased assembly of the nuclear pore complex (NPC) occurs immediately after the last PZD, which generates anterior-posterior polarized nuclei: MAC-specific NPCs assemble in anterior presumptive MACs but not in posterior presumptive MICs. MAC-specific NPC assembly in the anterior nuclei occurs much earlier than transport of Twi1p, which is required for MAC genome rearrangement. Correlative light-electron microscopy shows that addition of new nuclear envelope (NE) precursors occurs through the formation of domains of redundant NE, where the outer double membrane contains the newly assembled NPCs. Nocodazole inhibition of the second PZD results in assembly of MAC-specific NPCs in the division-failed zygotic nuclei, leading to failure of MIC differentiation. Our findings demonstrate that NPC type switching has a crucial role in the establishment of nuclear differentiation in ciliates. PMID:25788697

  10. Morfologia da glândula intermaxilar do sapo (Bufo paracnemis Lutz, 1925

    Directory of Open Access Journals (Sweden)

    Marlene Soares Dias Alves

    1988-01-01

    Full Text Available The intermaxillary gland of Bufo paracnemis Lutz, 1925 is located at the pre-nasal area being divided anteriorly by the ascendent processes of the intermaxillary bone. The secretory tubules converge to form very ramified ducts which drain into a common opening in a fosseta underlying the vomer bone. The cells of the intermaxillary gland were be classified in four distinct types: Light-granule secretory; Dark-granule secretory; ciliated and basal cells. The light-granule secretory cells, are the main type of the secretory tubules, which are also found, in smaller numbers, in the excretory ducts. The dark-granule secretory cells appear in a low number, both in the secretory tubules and in the excretory ducts. Degranulated cells are frequently found in the excretory ducts and represent the degranulated phase of dark-granule secretory cells. The ciliated cells occur only in the excretory ducts. The basal cells occur in small number in the excretory ducts and secretory tubules. In the excretory ducts these cells are regarded as being mioepithelial cells. Although usually described in the literature as mucous, the secretory cells of the intermaxillary gland have serous characteristics. The intermaxillary gland is the first salivary gland to appear in the vertebrate evolution. Its duct system is uniformly lined by ciliated cells and scattered secretory cells. This indicates that in the evolution, of salivary glands, there was a diversification of the duct system, together with progressxve concentration of secretory cells in special áreas of this system.

  11. Mid-facial deformity secondary to a traumatic haemorrhage in a maxillary cyst.

    Science.gov (United States)

    Adachi, Masatoshi; Miyata, Yusuke; Ito, Yuki

    2016-01-01

    Serious symptoms caused by intra-cystic bleeding are very rare. We describe a case of a maxillary cyst presenting with mid-facial deformity in a Japanese woman. She underwent bilateral Caldwell-Luc procedure 21 years earlier and suffered left cheek trauma 4 years earlier. She presented soon after the trauma complaining of left mid-facial deformity, and computed tomography showed a trilocular cystic lesion in the left maxilla. We performed facial osteotomy concurrent with cyst enucleation with lateral rhinotomy. Serosanguineous fluid filled the cyst cavity just below the face; however, additional cyst cavities contained straw-coloured fluid. She showed no signs of recurrence at the end of a 20-month follow-up, and her postoperative appearance was excellent. Histopathological examination showed that all cyst walls were lined by ciliated columnar epithelium, which was consistent with surgical ciliated cyst. We consider that the increased intra-cystic pressure caused by traumatic haemorrhage induced expansion of the pre-existing surgical ciliated cyst. PMID:26865702

  12. Tissue loss (white syndrome) in the coral Montipora capitata is a dynamic disease with multiple host responses and potential causes

    Science.gov (United States)

    Work, Thierry M.; Russell, Robin; Aeby, Greta S.

    2012-01-01

    Tissue loss diseases or white syndromes (WS) are some of the most important coral diseases because they result in significant colony mortality and morbidity, threatening dominant Acroporidae in the Caribbean and Pacific. The causes of WS remain elusive in part because few have examined affected corals at the cellular level. We studied the cellular changes associated with WS over time in a dominant Hawaiian coral, Montipora capitata, and showed that: (i) WS has rapidly progressing (acute) phases mainly associated with ciliates or slowly progressing (chronic) phases mainly associated with helminths or chimeric parasites; (ii) these phases interchanged and waxed and waned; (iii) WS could be a systemic disease associated with chimeric parasitism or a localized disease associated with helminths or ciliates; (iv) corals responded to ciliates mainly with necrosis and to helminths or chimeric parasites with wound repair; (v) mixed infections were uncommon; and (vi) other than cyanobacteria, prokaryotes associated with cell death were not seen. Recognizing potential agents associated with disease at the cellular level and the host response to those agents offers a logical deductive rationale to further explore the role of such agents in the pathogenesis of WS in M. capitata and helps explain manifestation of gross lesions. This approach has broad applicability to the study of the pathogenesis of coral diseases in the field and under experimental settings.

  13. Protozooplankton in the Deep Oligotrophic Traunsee (Austria) Influenced by Discharges of Soda and Salt Industries

    International Nuclear Information System (INIS)

    Traunsee is a deep oligotrophic lake in Austria characterised by an artificial enrichment of chloride in the hypolimnion (up to 170 mg L-1) caused by waste disposal of soda and salt industries. Protists were collected monthly over one year, observed alive and after Quantitative Protargol Staining (ciliates) or via epifluorescence microscopy (heterotrophic flagellates). Three sites within the lake (0-40 m depths) were compared to deeper water layers from 60-160 m depths where chloride concentrations and conductivity were increased. In addition, we observed the protozooplankton of two neighbouring lakes, i.e. reference systems, during one sampling occasion. In Traunsee the abundance of ciliates was low (200-36 600 cells L-1) in contrast to high species diversity (at least 60 different species; HS = 2.6) throughout the year. The main pelagic species in terms of abundance were small oligotrichs and prostomatids like Rimostrombidium brachykinetum/hyalinum, Balanion planctonicum and Urotricha spp. throughout the investigation period. Among free-living heterotrophic flagellates, which occurred at densities of 40-2800 cells mL-1, small morphotypes dominated in the pelagial. No differences at the community level between the three lakes could be observed and pelagic ciliates and flagellates seemed not to be affected by increased chloride concentrations or by enhanced conductivity

  14. The effect of ajowan (Carum copticum L. essential oils on eukaryotic ruminal microorganisms of Mehraban sheep.

    Directory of Open Access Journals (Sweden)

    Razieh Talebzadeh

    2013-12-01

    Full Text Available Essential oils may improve the utilization of nutrients by ruminal microorganisms. The aim of this study was to assess the effect of different doses of ajowan essential oils (AEO on growth and fibrolytic activity of anaerobic fungi, and generic distribution of ciliated protozoa (in vitro.Different doses of AEO (0, 150, 300, 450 and 600 ppm were added to experimental tubes. The effect of AEO was evaluated on growth and fibrolytic enzyme activity of an anaerobic fungus (Neocalimastix spp.. Generic distribution of ciliated protozoa were evaluated in response to different doses of AEO.The growth of fungus (Neocalimastix spp. were inhibited and activity of fibrolytic enzymes of fungus were reduced by adding AEO. Also, an inhibitory effect was seen in concentration of ciliated protozoa and some genus were completely disappeared at the doses of 300 ppm and higher. The doses used in this study reduced the fibrolytic activity of the studied rumen microorganisms which is undesirable in practical animal nutrition. Further research is needed to assess the effects of AEO at lower doses on these parameters and also proteolysis and methanogenesis.

  15. Stalking the wild Tetrahymena.

    Science.gov (United States)

    Katz, Laura A; Turkewitz, Aaron P

    2013-02-01

    We live on a microbial planet. Microorganisms dominate in terms of numbers of lineages, numbers of organisms, biomass and evolutionary innovations. Yet much remains to be learned about our microbial neighbours. We have gotten to know a few species that have been transformed into 'laboratory rats' (i.e. model organisms), but even here our understanding of the natural history of these lineages remains inadequate as there are few data from populations living in natural habitats. Zufall et al. (2013) move beyond this trend by providing insights into the natural history of Tetrahymena thermophila, a ciliate that has been used in many studies of cellular and molecular biology. Characterization of T. thermophila sampled from numerous ponds across this ciliate's range in Eastern North America reveals the following: (i) considerable differentiation among isolates, with the greatest diversity among lineages in New England, and (ii) a relatively small effective population size for this model ciliate. Such population data are fundamental for inferences about the origins of the numerous remarkable features of T. thermophila. PMID:23476937

  16. Stress and Protists: No life without stress.

    Science.gov (United States)

    Slaveykova, Vera; Sonntag, Bettina; Gutiérrez, Juan Carlos

    2016-08-01

    We report a summary of the symposium "Stress and Protists: No life without stress", which was held in September 2015 on the VII European Congress of Protistology in partnership with the International Society of Protistologists (Seville, Spain). We present an overview on general comments and concepts on cellular stress which can be also applied to any protist. Generally, various environmental stressors may induce similar cell responses in very different protists. Two main topics are reported in this manuscript: (i) metallic nanoparticles as environmental pollutants and stressors for aquatic protists, and (ii) ultraviolet radiation - induced stress and photoprotective strategies in ciliates. Model protists such as Chlamydomonas reinhardtii and Tetrahymena thermophila were used to assess stress caused by nanoparticles while stress caused by ultraviolet radiation was tested with free living planktonic ciliates as well as with the symbiont-bearing model ciliate Paramecium bursaria. For future studies, we suggest more intensive analyses on protist stress responses to specific environmental abiotic and/or biotic stressors at molecular and genetic levels up to ecological consequences and food web dynamics. PMID:27365178

  17. Crypt cells are involved in kin recognition in larval zebrafish.

    Science.gov (United States)

    Biechl, Daniela; Tietje, Kristin; Gerlach, Gabriele; Wullimann, Mario F

    2016-01-01

    Zebrafish larvae imprint on visual and olfactory kin cues at day 5 and 6 postfertilization, respectively, resulting in kin recognition later in life. Exposure to non-kin cues prevents imprinting and kin recognition. Imprinting depends on MHC class II related signals and only larvae sharing MHC class II alleles can imprint on each other. Here, we analyzed which type of olfactory sensory neuron (OSN) detects kin odor. The single teleost olfactory epithelium harbors ciliated OSNs carrying OR and TAAR gene family receptors (mammals: main olfactory epithelium) and microvillous OSNs with V1R and V2R gene family receptors (mammals: vomeronasal organ). Additionally, teleosts exhibit crypt cells which possess microvilli and cilia. We used the activity marker pERK (phosphorylated extracellular signal regulated kinase) after stimulating 9 day old zebrafish larvae with either non-kin conspecific or food odor. While food odor activated both ciliated and microvillous OSNs, only the latter were activated by conspecific odor, crypt cells showed no activation to both stimuli. Then, we tested imprinted and non-imprinted larvae (full siblings) for kin odor detection. We provide the first direct evidence that crypt cells, and likely a subpopulation of microvillous OSNs, but not ciliated OSNs, play a role in detecting a kin odor related signal. PMID:27087508

  18. The ‘division of labour’ model of eye evolution

    Science.gov (United States)

    Arendt, Detlev; Hausen, Harald; Purschke, Günter

    2009-01-01

    The ‘division of labour’ model of eye evolution is elaborated here. We propose that the evolution of complex, multicellular animal eyes started from a single, multi-functional cell type that existed in metazoan ancestors. This ancient cell type had at least three functions: light detection via a photoreceptive organelle, light shading by means of pigment granules and steering through locomotor cilia. Located around the circumference of swimming ciliated zooplankton larvae, these ancient cells were able to mediate phototaxis in the absence of a nervous system. This precursor then diversified, by cell-type functional segregation, into sister cell types that specialized in different subfunctions, evolving into separate photoreceptor cells, shading pigment cells (SPCs) or ciliated locomotor cells. Photoreceptor sensory cells and ciliated locomotor cells remained interconnected by newly evolving axons, giving rise to an early axonal circuit. In some evolutionary lines, residual functions prevailed in the specialized cell types that mirror the ancient multi-functionality, for instance, SPCs expressing an opsin as well as possessing rhabdomer-like microvilli, vestigial cilia and an axon. Functional segregation of cell types in eye evolution also explains the emergence of more elaborate photosensory–motor axonal circuits, with interneurons relaying the visual information. PMID:19720646

  19. A preliminary study on the microzooplankton of Chilika Lake, a brackish water lagoon on the east coast of India.

    Science.gov (United States)

    Sahu, Biraja Kumar; Srichandan, Suchismita; Panigrahy, R C

    2016-01-01

    Abundance and composition of microzooplankton in Chilika Lake were studied covering three seasons during 2012-2013. Ciliates (19 species), rotifers (13 species), crustacean larvae (2 taxa) and heterotrophic dinoflagellates (2 species) were the four major groups. Ciliates, however, have emerged as the most dominant group throughout the lake in all the seasons except in the freshwater-influenced areas. The average contribution of ciliates was highest (avg. 55.3 ± 38.7 %) during the premonsoon season followed by post-monsoon (avg. 49.0 ± 32.5 %) and monsoon (avg. 47.8 ± 41.6 %) seasons. Crustacean larvae formed the second dominant group whose percentage contribution was marginally high in the premonsoon (avg. 41.2 ± 38.8 %) followed by monsoon (avg. 29.1 ± 27.0 %) and post-monsoon (avg. 28.7 ± 23.4 %). Results of cluster analysis and multidimensional scaling on abundance of microzooplankton depicted well-defined clusters. The stations with high salinity formed a different group indicating seasonal variation in species composition and abundance of microzooplankton is primarily governed by salinity. PMID:26718950

  20. Metal concentrations in stream biofilm and sediments and their potential to explain biofilm microbial community structure

    International Nuclear Information System (INIS)

    Concentrations of metals associated with sediments have traditionally been analysed to assess the extent of heavy metal contamination in freshwater environments. Stream biofilms present an alternative medium for this assessment which may be more relevant to the risk incurred by stream ecosystems as they are intensively grazed by aquatic organisms at a higher trophic level. Therefore, we investigated zinc, copper and lead concentrations in biofilms and sediments of 23 stream sites variously impacted by urbanisation. Simultaneously, biofilm bacterial and ciliate protozoan community structure was analysed by Automated Ribosomal Intergenic Spacer Analysis and Terminal Restriction Fragment Length Polymorphism, respectively. Statistical analysis revealed that biofilm associated metals explained a greater proportion of the variations observed in bacterial and ciliate communities than did sediment associated-metals. This study suggests that the analysis of metal concentrations in biofilms provide a good assessment of detrimental effects of metal contaminants on aquatic biota. - Highlights: ► Zn, Cu and Pb concentrations in biofilm and sediments from 23 streams were assessed. ► Bacteria and ciliate protozoa were simultaneously used as biological indicators. ► Zn and Cu were generally enriched in biofilm compared to sediments. ► Metals in biofilm provide a useful assessment of freshwater ecosystem contamination. ► Results highlight the likely ecological importance of biofilm associated metals. - Metal concentrations in stream biofilms provide a good assessment of the effects of trace metal contaminants on freshwater ecosystems.

  1. Feeding by Actinophrys sol (Protista, Heliozoa): 1 light microscopy.

    Science.gov (United States)

    Patterson, D J; Hausmann, K

    1981-01-01

    The feeding behavior of the heliozoon Actinophrys sol was investigated using the ciliate Colpidium colpoda as food. The ciliate is caught by adhesion to the arms of the heliozoon. Within 20 min the prey is enclosed by a funnel-shaped pseudopodium which progresses over the prey by the action of its differentiated leading edge. Independent Actinophrys cells may fuse together during prey capture and the early stages of prey digestion. After prey ingestion, the ciliate is lysed and the contents of the food vacuole coagulate. Much of the fluid is removed from the food vacuole and, within 4 h of feeding, the food vacuole has condensed around its coagulated contents. As food vacuole condensation occurs, the peripheral region of the heliozoon cell becomes vacuolated. The appearance of the cell and of the food vacuole remain the same for about 12 h, after which time the undigested residues in the food vacuoles are egested, fused masses of cells separate as uninucleate cells and nuclear division may occur. During feeding, the extrusomes are greatly depleted. These bodies are implicated in the processes of food capture and in the production of food vacuole membrane. PMID:7311876

  2. The rebirth of the morphogenetic field as an explanatory tool in biology

    Directory of Open Access Journals (Sweden)

    Perović Slobodan

    2013-01-01

    Full Text Available I discuss two uses of the concept of the morphogenetic field, a tool of the 19th century biology motivated by particular ontological views of the time, which has been re-emerging and increasingly relevant in explaining microbiological phenomena. I also consider the relation of these uses to the Central Dogma of modern biology as well as Modern Synthesis of Darwinism and genetics. An induced morphogenetic field is determined by a physical (e.g., gravitational field, or it acquires a physical (e.g., visco-elastic field’s characteristics. Such a morphogenetic field presents only a weak challenge to the Central Dogma of Modern Synthesis by indirectly, albeit severely, constraining variability at the molecular level. I discuss explanations that introduce structural inheritance in ciliate protozoa, as well as the experimental evidence on which these arguments are based. The global cellular morphogenetic field is a unit of such inheritance. I discuss relevant cases of structural inheritance in ciliates that bring about internal cellular as well as functional changes and point out that DNA is absent in the cortex and that RNA controls neither intermediary nor the global level of the field. I go on to argue that utilizing knowledge of known physical fields may advance explanations and understanding of the morphogenetic field in ciliates as the unit of both development and inheritance. [Projekat Ministarstva nauke Republike Srbije, br. 179041: Dynamic Systems in nature and society: Philosophical and empirical aspects

  3. Proteolytic processing of the cilium adhesin MHJ_0194 (P123J ) in Mycoplasma hyopneumoniae generates a functionally diverse array of cleavage fragments that bind multiple host molecules.

    Science.gov (United States)

    Raymond, Benjamin B A; Jenkins, Cheryl; Seymour, Lisa M; Tacchi, Jessica L; Widjaja, Michael; Jarocki, Veronica M; Deutscher, Ania T; Turnbull, Lynne; Whitchurch, Cynthia B; Padula, Matthew P; Djordjevic, Steven P

    2015-03-01

    Mycoplasma hyopneumoniae, the aetiological agent of porcine enzootic pneumonia, regulates the presentation of proteins on its cell surface via endoproteolysis, including those of the cilial adhesin P123 (MHJ_0194). These proteolytic cleavage events create functional adhesins that bind to proteoglycans and glycoproteins on the surface of ciliated and non-ciliated epithelial cells and to the circulatory host molecule plasminogen. Two dominant cleavage events of the P123 preprotein have been previously characterized; however, immunoblotting studies suggest that more complex processing events occur. These extensive processing events are characterized here. The functional significance of the P97 cleavage fragments is also poorly understood. Affinity chromatography using heparin, fibronectin and plasminogen as bait and peptide arrays were used to expand our knowledge of the adhesive capabilities of P123 cleavage fragments and characterize a novel binding motif in the C-terminus of P123. Further, we use immunohistochemistry to examine in vivo, the biological significance of interactions between M. hyopneumoniae and fibronectin and show that M. hyopneumoniae induces fibronectin deposition at the site of infection on the ciliated epithelium. Our data supports the hypothesis that M. hyopneumoniae possesses the molecular machinery to influence key molecular communication pathways in host cells. PMID:25293691

  4. Utilisation des protozoaires ciliés (Paramecium africanum, Colpidium uncinatum, Neobursaridium gigas pour l'épuration bactériologique des eaux polluées en microcosme

    Directory of Open Access Journals (Sweden)

    Nguedji, JBT.

    2003-01-01

    Full Text Available An Microcosm Use of Ciliate Protozoa (Paramecium africanum, Colpidium uncinatum, Neobursaridium gigas for Bacterial Purification of Polluted Water. Tests on the grazing of ciliated protozoa Paramecium africanum, Colpidium uncinatum and Neobursaridium gigas on the bacteria Escherichia coli and Staphylococcus sp. were carried out in an microcosm aquatic environment. These tests aimed at assessment of the role of these predators protozoa in the bacterial purification of polluted water. The evolution of the feeding kinetics of these protozoa shows a phase of adaptation of the predator to the prey, with a slow feeding rate and a phase of accelerate of feeding. The two phases are separated by a short period of recognition. The polynomial functions of the kinetics of predation show that C. uncinatum and P. africanum graze faster on E. coli than on Staphylococcus sp., meanwhile N. gigas feeds slowly on E. coli than on Staphylococcus sp. The time of contact between the ciliated protozoa and the bacteria, the predatory protozoa specie and the specie of the bacteria, should be considered simultaneously when evaluating the variation of bacterial concentrations in aquatic environment being purified.

  5. The small subunit rRNA gene sequence of the chonotrich Chilodochona carcini Jankowski, 1973 confirms chonotrichs as a dysteriid-derived clade (Phyllopharyngea, Ciliophora).

    Science.gov (United States)

    Lynn, Denis H

    2016-08-01

    The chonotrichs are sessile ciliated protozoa that are ectosymbiotic on the body parts of a variety of crustaceans. They have long been considered a separate group because their sessile habit has resulted in the evolution of a very divergent body form and reproductive strategy compared to free-living ciliates. In the mid-20th Century, the free-living dysteriid cyrtophorian ciliates were proposed as a potential sister clade because the chonotrich bud or daughter cell showed similarities during division morphogenesis (i.e. ontogeny) to these free-living dysteriids. A single small subunit (SSU) rRNA gene sequence is available for the chonotrich Isochona sp. However, its authenticity has recently been questioned, and the placement of this sequence within the dysteriid clade has added to this controversy. In this report, the SSUrRNA gene sequence of the chonotrich Chilodochona carcini, ectosymbiotic on the green crab Carcinus maenas, is provided. Topology testing of the SSUrRNA gene phylogeny, constructed by Bayesian Inference, robustly supports the sister-group relationship of Isochona sp. and Chilodochona carcini, the monophyly of these two chonotrichs, and the divergence of the chonotrich clade within the dysteriid clade. PMID:27151876

  6. Therapeutic antibodies reveal Notch control of transdifferentiation in the adult lung.

    Science.gov (United States)

    Lafkas, Daniel; Shelton, Amy; Chiu, Cecilia; de Leon Boenig, Gladys; Chen, Yongmei; Stawicki, Scott S; Siltanen, Christian; Reichelt, Mike; Zhou, Meijuan; Wu, Xiumin; Eastham-Anderson, Jeffrey; Moore, Heather; Roose-Girma, Meron; Chinn, Yvonne; Hang, Julie Q; Warming, Søren; Egen, Jackson; Lee, Wyne P; Austin, Cary; Wu, Yan; Payandeh, Jian; Lowe, John B; Siebel, Christian W

    2015-12-01

    Prevailing dogma holds that cell-cell communication through Notch ligands and receptors determines binary cell fate decisions during progenitor cell divisions, with differentiated lineages remaining fixed. Mucociliary clearance in mammalian respiratory airways depends on secretory cells (club and goblet) and ciliated cells to produce and transport mucus. During development or repair, the closely related Jagged ligands (JAG1 and JAG2) induce Notch signalling to determine the fate of these lineages as they descend from a common proliferating progenitor. In contrast to such situations in which cell fate decisions are made in rapidly dividing populations, cells of the homeostatic adult airway epithelium are long-lived, and little is known about the role of active Notch signalling under such conditions. To disrupt Jagged signalling acutely in adult mammals, here we generate antibody antagonists that selectively target each Jagged paralogue, and determine a crystal structure that explains selectivity. We show that acute Jagged blockade induces a rapid and near-complete loss of club cells, with a concomitant gain in ciliated cells, under homeostatic conditions without increased cell death or division. Fate analyses demonstrate a direct conversion of club cells to ciliated cells without proliferation, meeting a conservative definition of direct transdifferentiation. Jagged inhibition also reversed goblet cell metaplasia in a preclinical asthma model, providing a therapeutic foundation. Our discovery that Jagged antagonism relieves a blockade of cell-to-cell conversion unveils unexpected plasticity, and establishes a model for Notch regulation of transdifferentiation. PMID:26580007

  7. Red waters of Myrionecta rubra are biogeochemical hotspots for the Columbia River estuary with impacts on primary/secondary productions and nutrient cycles

    Energy Technology Data Exchange (ETDEWEB)

    Herfort, Lydie; Peterson, Tawnya D.; Prahl, Fredrick G.; McCue, Lee Ann; Needoba, Joe A.; Crump, Byron C.; Roegner, G. Curtis; Campbell, Victoria; Zuber, Peter A.

    2012-02-29

    The localized impact of blooms of the mixotrophic ciliate Myrionecta rubra in the Columbia River estuary during 2007-2010 was evaluated with biogeochemical, light microscopy, physiological and molecular data. M. rubra affected surrounding estuarine nutrient cycles, as indicated by high and low concentrations of organic nutrients and inorganic nitrogen, respectively, associated with red waters. M. rubra blooms also altered the energy transfer pattern in patches of the estuarine water that contain the ciliate by creating areas characterized by high primary production and elevated levels of fresh autochthonous particulate organic matter, therefore shifting the trophic status in emergent red water areas of the estuary from net heterotrophy towards autotrophy. The pelagic estuarine bacterial community structure was unaffected by M. rubra abundance, but red waters of the ciliate do offer a possible link between autotrophic and heterotrophic processes since they were associated with elevated dissolved organic matter and enhanced microbial secondary production. Taken together these findings suggest that M. rubra red waters are biogeochemical hotspots of the Columbia River estuary.

  8. Morphological study of the effects of ozone on rat lung. I. Short-term exposure

    Energy Technology Data Exchange (ETDEWEB)

    Hiroshima, K.; Kohno, T.; Owada, H.; Hayashi, Y.

    1987-12-01

    In order to determine the effects of ozone on lungs and the course of cell renewal after damage, young male rats were exposed to 3 ppm of ozone for 4 hr. They were killed at 1, 6, 12, and 18 hr and 1, 2, 3, 4, 7, and 14 days after exposure. One hour before the killing, dividing cells were labeled with tritiated thymidine. Type 1 cells of centriacinar location and bronchiolar cells were severely damaged after exposure. Labeling indices of type 2 cells and bronchiolar nonciliated cells increased 1 day after exposure. Hyperplasia of type 2 cells and bronchiolar nonciliated cells was observed 2 and 3 days after exposure. Ciligenesis of bronchiolar ciliated cells occurred 4 days after exposure. Our study shows that injured type 1 cells are repaired by proliferation of type 2 cells and that injured bronchiolar ciliated and Clara cells are repaired by proliferation of bronchiolar nonciliated cells. These undifferentiated cells are probably progenitors of ciliated cells and Clara cells, and some nonciliated cells are in a transitional form between nonciliated and type 2 cells.

  9. Morphological study of the effects of ozone on rat lung. I. Short-term exposure

    International Nuclear Information System (INIS)

    In order to determine the effects of ozone on lungs and the course of cell renewal after damage, young male rats were exposed to 3 ppm of ozone for 4 hr. They were killed at 1, 6, 12, and 18 hr and 1, 2, 3, 4, 7, and 14 days after exposure. One hour before the killing, dividing cells were labeled with tritiated thymidine. Type 1 cells of centriacinar location and bronchiolar cells were severely damaged after exposure. Labeling indices of type 2 cells and bronchiolar nonciliated cells increased 1 day after exposure. Hyperplasia of type 2 cells and bronchiolar nonciliated cells was observed 2 and 3 days after exposure. Ciligenesis of bronchiolar ciliated cells occurred 4 days after exposure. Our study shows that injured type 1 cells are repaired by proliferation of type 2 cells and that injured bronchiolar ciliated and Clara cells are repaired by proliferation of bronchiolar nonciliated cells. These undifferentiated cells are probably progenitors of ciliated cells and Clara cells, and some nonciliated cells are in a transitional form between nonciliated and type 2 cells

  10. Transposon Invasion of the Paramecium Germline Genome Countered by a Domesticated PiggyBac Transposase and the NHEJ Pathway

    Directory of Open Access Journals (Sweden)

    Emeline Dubois

    2012-01-01

    Full Text Available Sequences related to transposons constitute a large fraction of extant genomes, but insertions within coding sequences have generally not been tolerated during evolution. Thanks to their unique nuclear dimorphism and to their original mechanism of programmed DNA elimination from their somatic nucleus (macronucleus, ciliates are emerging model organisms for the study of the impact of transposable elements on genomes. The germline genome of the ciliate Paramecium, located in its micronucleus, contains thousands of short intervening sequences, the IESs, which interrupt 47% of genes. Recent data provided support to the hypothesis that an evolutionary link exists between Paramecium IESs and Tc1/mariner transposons. During development of the macronucleus, IESs are excised precisely thanks to the coordinated action of PiggyMac, a domesticated piggyBac transposase, and of the NHEJ double-strand break repair pathway. A PiggyMac homolog is also required for developmentally programmed DNA elimination in another ciliate, Tetrahymena. Here, we present an overview of the life cycle of these unicellular eukaryotes and of the developmentally programmed genome rearrangements that take place at each sexual cycle. We discuss how ancient domestication of a piggyBac transposase might have allowed Tc1/mariner elements to spread throughout the germline genome of Paramecium, without strong counterselection against insertion within genes.

  11. Patógenos que afectan el cultivo de Litopenaeus vannamei en ambiente marino y dulceacuícola en el estado de Baja California, México - Pathogens that affect crop Litopenaeus vannamei in marine environment and freshwater in the state of Baja California, México

    Directory of Open Access Journals (Sweden)

    Jorge Cáceres Martínez

    2010-03-01

    Full Text Available ResumenEntre abril del 2003 y septiembre del 2006 se realizó un estudio sobreepibiontes y agentes patógenos del camarón blanco Litopenaeus vannameicultivado en siete granjas del estado de Baja California, México; dichas granjas cultivaron camarón en tres diferentes ambientes salinos. El estudio comprendió análisis en fresco, análisis histopatológico y análisis moleculares específicos para el virus de la mancha blanca (WSSV. Camarones cultivados en ambiente marino (salinidad de 35.9 upspresentaron protozoos coloniales peritricos Zoothamnium sp. adheridos a las branquias con una prevalencia de 0 al 80% y un grado de severidad de 1 a 2 (P=0-80%, GS=1-2, además, bacterias filamentosas Leucothrix sp. (P=0-50%, GS=1-3. En camarones cultivados con agua de origen subterráneo (salinidad de 1.6 ups, los epibiontes asociados a las branquias fueron diatomeas (P=0-20%, GS=1-2 y rotíferos (P=0-40%, GS=1-2. Y camarones cultivados con agua derivada de río (salinidades de 0.8 a 5.3 ups, presentaron algas coloniales Euglenoides (P=0-100% GS=1-2, protozoos peritricos Epistylis sp. (P=0-100%, GS= 1-3 y bacterias filamentosas Leucothrix sp. (P= 0-100, GS=1-3, como epibiontes branquiales. El análisis histopatológico reveló melanosis, necrosis e infiltración hemocítica de las branquias, asociado con los epibiontes y condiciones ambientales de cultivo. Además, se observaron cuerpos de inclusión Cowdry tipo “A” relacionados con el Virus de la NecrosisHematopoyética Hipodérmica Infecciosa (IHHNV en camarones de todas las granjas estudiadas (P= 2-36 % y GS=1-2. Adicionalmente, encamarones cultivados con agua de origen subterráneo el análisishistopatológico del hepatopáncreas mostró la presencia de infeccionesbacterianas (P=15-69%, GS= 1-4 e inclusiones con múltiples esferaseosinófilas en su interior parecidas a Haplosporidios (P= 0-48% y GS=1-3. Los análisis moleculares específicos para el virus de la mancha blanca fueron negativos. Se

  12. The isolation and identification of a P.polymyxa sp.serain and its bio-control function against pathogenic fungus%一株具有抗菌作用的P. polymyxa sp.菌株的分离鉴定

    Institute of Scientific and Technical Information of China (English)

    陈林; 董兆麟; 段康民

    2011-01-01

    目的 研究对辣椒疫病具有防治作用的一株桔抗细菌.方法 从辣椒植株根的韧皮部分离出对辣椒疫霉(Phytophora capsic Leonian)具有强烈拮抗作用的辣椒植株内生细菌菌株,通过形态观察、生理生化实验、16s rRNA基因测序以及与NCBI(National Center for Biotechnology Information)的数据库中进行对比,鉴定该菌株.采用平皿对峙法测定其抑菌活性.结果 分离出的该菌株确定为Peanibacillus polymyxa sp(其后简称为J),其对辣椒疫霉(phytophora capsic Leonian)、西瓜枯萎(Fusarium oxysporum f.sp.niveum)、小麦赤霉(Gibberella saubinetii(Mont.)Sacc.)、马铃薯干腐(Gibberella pulicris)、烟草赤星(A.alternata (Fr.) Keisslerf.sp.nicotianae)和番茄早疫(Alternaria solani)病害真菌具有抑菌活性.结论 对Paenibacillus polymyxa sp.的生物学特性研究结果表明,菌株对多种植物病原真菌具有抑制作用.同时,它还可固定大气中的氮,且无磷酸酶、纤维素酶和脂肪酶活性,它同宿主属互惠共生关系.因此,该菌株可能是适用于生物防治的一株优良菌株.%Aim Characterization of a Paenibacillus polymyxa strain J that was isolated from the stem of the capsicum tree, beneath the epidermis. Methods 16S rRNA gene sequence of this isolate was analyzed and blasted a-gainst the NCBI ( National Center for Biotechnology Information) database, and the morphological, biochemical and physiological characteristics of this strain were investigated. Results The strain was identified as P. Polymyxa sp. It showed strong growth inhibition against pathogenic fungi and bacteria. The plants pathogenic fungi inhibited include phytophora capsic Leonian, Fusarium oxysporum f. Sp. Niveum, Gibberella saubinetii ( Mont. ) Sacc. , Gib-berella pulicris ,A. Alternata ( Fr. ) Keisslerf. Sp. Nicotianae and Alternaria solani. Conclusion This strain not only exhibits broad spectrum of antagonism but also has the ability of fixing N2. It does not

  13. Induced Resistance of Endophyte XG-1 against Fusarium Wilt of Watermelon%内生菌XG-1对西瓜枯萎病诱导抗性的研究

    Institute of Scientific and Technical Information of China (English)

    孙正祥; 王丰; 周燚

    2013-01-01

    This experiment studied the induced resistance of endophytic bacterium XG-1 against Fusarium wilt of watermelon by taking the content variation of MDA and the activity variation of four defense enzymes including PAL,POD,PPO and CAT as the indexes. The results showed that the activities of the four defense enzymes in leaves of watermelon plants treated by bacterial suspension of endophyte XG-1 were all higher than the control. After the leaves were treated by XG-1 bacterial suspension and Fusarium oxysporum f. sp niveum (FON),the activity of PAL showed two peeks on the 4th day and the 10th day,l. 86 and 1. 52 times higher than the control, respectively; the activities of POD and PPO both exhibited the peek on the 4th day,increased by 52. 6% and 57. 1%,respectively; the activity of CAT exhibited the peek on the 5th day,increased by 56. 4%;MDA content firstly descended and then gradually ascended,falling to the lowest on the 4th day,dropped by 33. 1%. The results suggest that induced resistance is one of the important mechanisms by strain XG-1 in control of watermelon Fusarium wilt.%以苯丙氨酸解氨酶(PAL)、过氧化物酶(POD)、多酚氧化酶(PPO)、过氧化氢酶(CAT)4种防御酶的活性变化以及丙二醛(MDA)的含量变化作为指标,研究内生菌XG-1对西瓜枯萎病的诱导抗性,为阐明XG-1的作用机制及其开发应用提供理论依据.结果表明:经内生菌XG-1菌悬液处理后,西瓜苗叶片的PAL、POD、PPO及CAT活性均高于清水对照.同时接种XG-1菌悬液和西瓜枯萎病菌(Fusarium oxysporum f.sp niveum,FON)的叶片,PAL活性在接种后第4天、第10天出现2次高峰,分别比对照增加1.86倍和1.52倍;POD和PPO活性均在第4天达到最高峰,分别比对照提高52.6%和57.1%;CAT活性在第5天时达到最高峰,比对照提高56.4%.同时接种XG-1菌悬液和枯萎病菌FON后,西瓜苗叶片的MDA含量呈先下降后逐渐上升趋势,第4天时达到最低值,比对照下降33.1%.由此

  14. 用改进的荧光标记技术测定具沟急游虫的摄食速率%THE GRAZING RATE OF STROMBIDIUM SUCALTUM USING A MODIFIED FLUORESCENCE—LABELED TECHNIQUE

    Institute of Scientific and Technical Information of China (English)

    洪华生; 柯林; 黄邦钦; 林学举

    2001-01-01

    Studies on the grazing rate of Strombidium sucaltum, one of the common species of ciliates in Western Sea, Xiamen, were carried out under laboratory conditions using a modified technique of fluorescence—labeled bacteria or nanophytoplankton, in Oct. 1997. Compared to the previous fluorescence—labeled technique, two steps were changed. Firstly, ciliates collected in the field were cultured under laboratory conditions prior to the grazing experiments, in order to obtain larger amount of ciliates. Secondly, the filtering step was replaced by pipetting, so that individual ciliate could be more easily identified. These changes have the following advantage: the procedures are simplified because ciliate staining is not required and the concentration of fixative can be adjusted. The grazing rates of Strombidium sucaltum on bacteria and nanophytoplankton under room temperature (22℃) were 4.224pgC/(cell*h) and 5.0pgC/(cell*h), respectively. Extrapolating the results to in situ situations, the assimilation rates of carbon by ciliates on bacteria and nanophytoplankton in the southern Taiwan Strait in summer were 0.0176mgC/(m3*d) and 0.0201mgC/(m3*d), respectively, and in the northern Taiwan Strait in winter were 0.0238mgC/(m3*d) and 0.0272mgC/(m3*d), respectively. An increase in temperature led to an increase in grazing rate of ciliate over the range of 14—26℃ while at higher degrees (26—34℃) no further increase in grazing rate was observed.%于1997年10月在厦门西海域采集纤毛虫常见种——具沟急游虫,采用改进的荧光标记法在实验室条件下进行纤毛虫的摄食速率研究。结果表明,改进的荧光标记法具有操作简便、节省昂贵的荧光染料、固定液浓度易于掌握等优点。用该方法在常温下(22℃)测得纤毛虫对细菌和微藻的摄食速率分别为4.224pgC/(cell*h)和5.0pgC/(cell*h)。将此实验结果外推至自然海区,可得台湾海峡南部夏季纤毛虫对细菌、

  15. A Novel and Effective Streptomyces sp. N2 Against Various Phytopathogenic Fungi.

    Science.gov (United States)

    Xu, Bo; Chen, Wei; Wu, Zhi-ming; Long, Yue; Li, Kun-tai

    2015-11-01

    Phytopathogenic fungi would induce a variety of plant diseases, resulting in a severe reduction of agricultural output. However, the current plant disease control is mainly dependent on the environmentally and healthily hazardous chemical fungicides. Thus, the present work aimed to isolate an effective antagonistic microorganism against various soilborne phytopathogenic fungi. By dual culture with Rhizoctonia solani, a novel Streptomyces specie, Streptomyces sp. N2, was screened out from a total of 167 isolated actinomycetes, which displayed a strong inhibitory effect on R. solani (26.85 ± 1.35 mm of inhibition zone diameter). By means of macroporous resin and silica gel column chromatography coupled with preparative HPLC, an antifungal metabolite (3-methyl-3,5-amino-4-vinyl-2-pyrone, C6H7O2N) was isolated and purified from Streptomyces sp. N2. The bioassay results showed that the purified antifungal metabolite could not only possess a broad-spectrum inhibitory effect on a range of plant pathogenic fungi in vitro (e.g., R. solani, Pyricularia grisea, Fusarium oxysporum f. sp. niveum, F. oxysporum f. sp. vasinfectum, Penicillium italicum, and Colletotrichum gloeosporioides), but also had a significantly effective in vivo biocontrol efficacy on grape fruits anthracnose caused by C. gloeosporioides. Microscopic observation indicated that the antifungal metabolite from Streptomyces sp. N2 would exert its antimicrobial activity by disorganizing the cytoplasmic organelles of phytopathogenic fungi. The above results suggested that Streptomyces sp. N2 was one of promising fungicide for biocontrol of fungal plant diseases, especially due to its broad-spectrum and effective antagonist on various plant pathogens. PMID:26306529

  16. Effect of Chitinase-Producing Strain V-8 on 3ontrolling Cotton Fusarium Wilt

    Institute of Scientific and Technical Information of China (English)

    2012-01-01

    [Objective] This study aimed to screen endophytic bacteria which is antag- onistic to cotton Fusarium wilt. [Method] Fresh cotton plants collected from cotton- growing areas in Jingzhou City, Hubei Province were used as experimental materials to isolate endophytic bacteria. Through chitinase test and co-culturing both micro-or- ganisms side by side on the same PDA culture plate, antagonistic strains to cotton Fusarium wilt were screened. [Result] A total of 83 bacterial isolates were obtained from cotton plants grown in the fields, six of which were chitinase-productive bacte- ria. Through chitinase test and co-culturing both micro-organisms side by side on the same PDA culture plate, strain V-8 which had the strongest antagonistic effect on Fusarium oxysporum f. sp. vasinfectum was screened. Strain V-8 had a wider anti- fungal spectrum with certain inhibitory effect on all the six important pathogenic fungi including Fusarium oxysporum f. sp niveum; it colonized stably in the rhizospheric soil of cotton, with a colonization density of up to 6.2x10s cfu/g fifty days after inoc- ulation; the relative effect on controlling cotton Fusarium wilt in pot test was 73.2%. The Findings of this study suggested that strain V-8 had great potential for biological control of cotton Fusarium wilt and could be taken as a substantial material for the cloning of chitinase genes. [Conclusion] The results from this study provides bases for the control of cotton fusarium wilt, as well as the exploitation of endophytic bac- teria resources in cotton and the development of novel biological pesticides.

  17. Assessment of DAPG-producing Pseudomonas fluorescens for Management of Meloidogyne incognita and Fusarium oxysporum on Watermelon

    Science.gov (United States)

    Meyer, Susan L. F.; Everts, Kathryne L.; Gardener, Brian McSpadden; Masler, Edward P.; Abdelnabby, Hazem M. E.; Skantar, Andrea M.

    2016-01-01

    Pseudomonas fluorescens isolates Clinto 1R, Wayne 1R, and Wood 1R, which produce the antibiotic 2,4-diacetylphloroglucinol (DAPG), can suppress soilborne diseases and promote plant growth. Consequently, these beneficial bacterial isolates were tested on watermelon plants for suppression of Meloidogyne incognita (root-knot nematode: RKN) and Fusarium oxysporum f. sp. niveum (Fon). In a greenhouse trial, Wayne 1R root dip suppressed numbers of RKN eggs per gram root on ‘Charleston Gray’ watermelon by 28.9%. However, in studies focused on ‘Sugar Baby’ watermelon, which is commercially grown in Maryland, a Wayne 1R root dip did not inhibit RKN reproduction or plant death caused by Fon. When all three isolates were applied as seed coats, plant stand in the greenhouse was reduced up to 60% in treatments that included Fon ± P. fluorescens, and eggs per gram root did not differ among treatments. In a microplot trial with Clinto 1R and Wayne 1R root dips, inoculation with P. fluorescens and/or Fon resulted in shorter vine lengths than treatment with either P. fluorescens isolate plus RKN. Root weights, galling indices, eggs per gram root, and second-stage juvenile (J2) numbers in soil were similar among all RKN-inoculated treatments, and fruit production was not affected by treatment. Plant death was high in all treatments. These studies demonstrated that the tested P. fluorescens isolates resulted in some inhibition of vine growth in the field, and were not effective for enhancing plant vigor or suppressing RKN or Fon on watermelon. PMID:27168652

  18. Assessment of DAPG-producing Pseudomonas fluorescens for Management of Meloidogyne incognita and Fusarium oxysporum on Watermelon.

    Science.gov (United States)

    Meyer, Susan L F; Everts, Kathryne L; Gardener, Brian McSpadden; Masler, Edward P; Abdelnabby, Hazem M E; Skantar, Andrea M

    2016-03-01

    Pseudomonas fluorescens isolates Clinto 1R, Wayne 1R, and Wood 1R, which produce the antibiotic 2,4-diacetylphloroglucinol (DAPG), can suppress soilborne diseases and promote plant growth. Consequently, these beneficial bacterial isolates were tested on watermelon plants for suppression of Meloidogyne incognita (root-knot nematode: RKN) and Fusarium oxysporum f. sp. niveum (Fon). In a greenhouse trial, Wayne 1R root dip suppressed numbers of RKN eggs per gram root on 'Charleston Gray' watermelon by 28.9%. However, in studies focused on 'Sugar Baby' watermelon, which is commercially grown in Maryland, a Wayne 1R root dip did not inhibit RKN reproduction or plant death caused by Fon. When all three isolates were applied as seed coats, plant stand in the greenhouse was reduced up to 60% in treatments that included Fon ± P. fluorescens, and eggs per gram root did not differ among treatments. In a microplot trial with Clinto 1R and Wayne 1R root dips, inoculation with P. fluorescens and/or Fon resulted in shorter vine lengths than treatment with either P. fluorescens isolate plus RKN. Root weights, galling indices, eggs per gram root, and second-stage juvenile (J2) numbers in soil were similar among all RKN-inoculated treatments, and fruit production was not affected by treatment. Plant death was high in all treatments. These studies demonstrated that the tested P. fluorescens isolates resulted in some inhibition of vine growth in the field, and were not effective for enhancing plant vigor or suppressing RKN or Fon on watermelon. PMID:27168652

  19. Metabolites from Aspergillus fumigatus, an endophytic fungus associated with Melia azedarach, and their antifungal, antifeedant, and toxic activities.

    Science.gov (United States)

    Li, Xiao-Jun; Zhang, Qiang; Zhang, An-Ling; Gao, Jin-Ming

    2012-04-01

    Thirty-nine fungal metabolites 1-39, including two new alkaloids, 12β-hydroxy-13α-methoxyverruculogen TR-2 (6) and 3-hydroxyfumiquinazoline A (16), were isolated from the fermentation broth of Aspergillus fumigatus LN-4, an endophytic fungus isolated from the stem bark of Melia azedarach. Their structures were elucidated on the basis of detailed spectroscopic analysis (mass spectrometry and one- and two-dimensional NMR experiments) and by comparison of their NMR data with those reported in the literature. These isolated compounds were evaluated for in vitro antifungal activities against some phytopathogenic fungi, toxicity against brine shrimps, and antifeedant activities against armyworm larvae (Mythimna separata Walker). Among them, sixteen compounds showed potent antifungal activities against phytopathogenic fungi (Botrytis cinerea, Alternaria solani, Alternaria alternata, Colletotrichum gloeosporioides, Fusarium solani, Fusarium oxysporum f. sp. niveum, Fusarium oxysporum f. sp. vasinfectum, and Gibberella saubinettii), and four of them, 12β-hydroxy-13α-methoxyverruculogen TR-2 (6), fumitremorgin B (7), verruculogen (8), and helvolic acid (39), exhibited antifungal activities with MIC values of 6.25-50 μg/mL, which were comparable to the two positive controls carbendazim and hymexazol. In addition, of eighteen that exerted moderate lethality toward brine shrimps, compounds 7 and 8 both showed significant toxicities with median lethal concentration (LC(50)) values of 13.6 and 15.8 μg/mL, respectively. Furthermore, among nine metabolites that were found to possess antifeedant activity against armyworm larvae, compounds 7 and 8 gave the best activity with antifeedant indexes (AFI) of 50.0% and 55.0%, respectively. Structure-activity relationships of the metabolites were also discussed. PMID:22409377

  20. Protozoan colonization on artificial substrates in relation to water quality in a tropical Indian harbour

    Institute of Scientific and Technical Information of China (English)

    2001-01-01

    A field study was conducted to evaluate the protozoancolonization patterns on artificial substrates in relation to organic pollution within a tropical harbour. The composition of protozoans and their succession rates on artificial substrates(polyurethane foam units) were compared between two field stations(A and B), and their presence were considered with regards to the prevailing water quality conditions at the study sites. Altogether 44 genera of flagellates and ciliates were documented. The common genera of flagellates and ciliates were documented. The common genera of flagellates encountered included Monas, Polytoma,and Chromalina. Among the ciliates, the predominant genera were Tetrahymena, Vorticella, Lagynophyra, and Heloiphyra. These groups exhibited characteristic successional patterns in relation to ambient water quality. At Station A, located close to the sewage outfall, the water quality parameters included poor Secchi-disc transparency(0.48m), dissolved oxygen of 1.93 mg/ml, salinity of 18 psu, and temperature 31.3 鳦. Here, thenanoflagellates(spumella)colonized first, followed by microcilliate(Tetrahymena) and sessile form(Vorticella). Station B, located on the seaward side, was characterized by relatively less-stressed environmental conditions with transparency 1.85m and dissolved oxygen value of 6.04 mg/ml. Salinity of 27.27 psu, and mean temperature of 30鳦 were recordedat "B". At this station, the nanoflagellate Polytoma was first documented to colonize on the substrate, followed by microcilliate(Lagynophra) and suctorid(Heliophyra). These findings support the use of protozoans as indicator species for evaluating the hazards posed by organic pollution to natural estuarine communities.

  1. Developmental duration and morphology of the sea star asterias amurensis, in tongyeong, Korea

    Science.gov (United States)

    Paik, Sang-Gyu; Park, Heung-Sik; Yi, Soon Kil; Yun, Sung Gyu

    2005-09-01

    The process of embryogenesis and larval development of the asteroid sea star Asterias amurensis (Lütken) was observed, with special attention paid to morphological change and larval duration. In reproductive season, mature sea stars were collected under floating net cages, located in Tongyeong, southern Korea. The mature eggs are 138 μm in average diameter, semi-translucent and orange in color, sperms in good condition appear light cream to white-gray in color. Embryos develop through the holoblastic equal cleavage stage and a wrinkled blastula stage that lasts about 9 hours after fertilization. Gastrulae bearing an expanded archenteron hatch from the fertilization envelope 22 hours after fertilization. At the end of gastrulation, rudiments of the left and right coelom are formed. By day 2, larvae possess complete alimentary canal and begin to feed. At this stage, the larva is called early bipinnaria. In 6day-old larvae, the pre- and post- oral ciliated bands form complete circuits and the bipinnarial processes start to develop. By day 12, the lateral and anterior projection of the larval wall processes along the ciliated bands begins to thicken and curl, and the ciliated bands become more prominent. By day 32, early brachiolaria are presented with three pairs of brachiolar arms. Advanced brachiolaria with a well-developed brachiolar complex (three pairs of brachia and central adhesive disc) occur 6 weeks after fertilization. In the field, spawning of the sea star was observed in April to May, settlement form larvae and just settlements seem to occur from June to July, and early juveniles occur from August to September. Although we had not described the end of brachiolaria stage, it can be tentatively estimated that the duration of the pelagic stage of A. amurensis is 40 to 50 days.

  2. Changes in microbial food web structure in response to changed environmental trophic status: a case study of the Vranjic Basin (Adriatic Sea).

    Science.gov (United States)

    Solić, M; Krstulović, N; Kuspilić, G; Nincević Gladan, Z; Bojanić, N; Sestanović, S; Santić, D; Ordulj, M

    2010-08-01

    Vranjic Basin, in the eastern part of KastelaBay (middle Adriatic Sea), received municipal wastewater until offshore submarine outfalls were finished in November 2004. To identify the responses of the microbial community to changes in the trophic status of the marine environment, two 4-year periods were compared: a eutrophic period (2001-2004) when the sewage waters entered the Basin and an oligotrophic period (2005-2008) after the outfalls were completed. The switch from eutrophic to oligotrophic conditions was accompanied by decreases in bacterial abundance, bacterial production and chlorophyll a, and increase in heterotrophic nanoflagellate (HNF) abundance and bacterial specific growth rate. Qualitative changes in the phytoplankton community manifested through dramatically decreased abundance of the diatom species Skeletonema costatum and Euglenophyta Eutreptiella spp. during the oligotrophic period. Furthermore, the percent contribution of pico-nano phytoplankton chlorophyll to total chlorophyll increased from less than 40% during the eutrophic period to more than 60% during the oligotrophic period. Changes in seasonal patterns of phytoplankton, bacteria and HNF abundance were also observed, with summer maxima during the eutrophic period and spring and autumn maxima during the oligotrophic period. Significant changes in the microbial food web were also identified. During eutrophic conditions, bacteria were dominantly under the phytoplankton-mediated bottom-up control whereas HNF were dominantly controlled by ciliate grazing (top-down control). In contrast, during the oligotrophic period, predominantly top-down control of bacteria by strong HNF grazing was observed. At the same time, HNF were spared from strong ciliate predation pressure because the ciliates apparently switched their dominant prey from HNF to the pico-nano phytoplankton fraction during that period. PMID:20570345

  3. Histochemical study of the oviducal gland and analysis of the sperm storage tubules of Mustelus schmitti Springer, 1939 (Chondrichthyes, Triakidae

    Directory of Open Access Journals (Sweden)

    Fernanda Gabriela Elías

    2015-08-01

    Full Text Available Abstract: The paired oviducal glands of immature and mature females of Mustelus schmitti were examined macro and microscopically. Findings indicate that these glands possessed the same zonation as in most chondrichthyans from anterior to posterior: club, papillary, baffle and terminal zones. The whole gland is composed by simple tubular glands that connect with transverse grooves all along the organ. The club zone presents a typical indian club shape with a simple columnar and ciliated epithelium including secretory cells PAS (+ and AB (+. The papillary zone is characterized by lamella forming small and long cones in numbers of three. The epithelium of this zone contains ciliated cells with apical nuclei and secretory cells with basal nuclei that stain AB (+The baffle zone consists of apically flattened lamellae alternating with spinnerets which are small projections disposed by both sides of the plateau. This whole structure is present in number of 8 or 9 units. A simple columnar ciliated epithelium covers the plateau and spinnerets and no AB or PAS staining is observed. The epithelium of the terminal zone is PAS (- and AB (+, and elongated tubules, that run adjacent to the baffle zone are the site where groups of spermatozoa are clearly observed in the lumen. The epithelium of the sperm storage tubules do not stain with any of the dyes tested. Sperm was also observed in the baffle zone, presumably in its way to the fecundation in the oviduct because it displays no aggregation pattern and was between the folds of the epithelium. By scanning electron microscopy sperm was observed in the club and baffle zones in a gland which belonged to a pregnant female.

  4. Accelerating Gene Discovery by Phenotyping Whole-Genome Sequenced Multi-mutation Strains and Using the Sequence Kernel Association Test (SKAT).

    Science.gov (United States)

    Timbers, Tiffany A; Garland, Stephanie J; Mohan, Swetha; Flibotte, Stephane; Edgley, Mark; Muncaster, Quintin; Au, Vinci; Li-Leger, Erica; Rosell, Federico I; Cai, Jerry; Rademakers, Suzanne; Jansen, Gert; Moerman, Donald G; Leroux, Michel R

    2016-08-01

    Forward genetic screens represent powerful, unbiased approaches to uncover novel components in any biological process. Such screens suffer from a major bottleneck, however, namely the cloning of corresponding genes causing the phenotypic variation. Reverse genetic screens have been employed as a way to circumvent this issue, but can often be limited in scope. Here we demonstrate an innovative approach to gene discovery. Using C. elegans as a model system, we used a whole-genome sequenced multi-mutation library, from the Million Mutation Project, together with the Sequence Kernel Association Test (SKAT), to rapidly screen for and identify genes associated with a phenotype of interest, namely defects in dye-filling of ciliated sensory neurons. Such anomalies in dye-filling are often associated with the disruption of cilia, organelles which in humans are implicated in sensory physiology (including vision, smell and hearing), development and disease. Beyond identifying several well characterised dye-filling genes, our approach uncovered three genes not previously linked to ciliated sensory neuron development or function. From these putative novel dye-filling genes, we confirmed the involvement of BGNT-1.1 in ciliated sensory neuron function and morphogenesis. BGNT-1.1 functions at the trans-Golgi network of sheath cells (glia) to influence dye-filling and cilium length, in a cell non-autonomous manner. Notably, BGNT-1.1 is the orthologue of human B3GNT1/B4GAT1, a glycosyltransferase associated with Walker-Warburg syndrome (WWS). WWS is a multigenic disorder characterised by muscular dystrophy as well as brain and eye anomalies. Together, our work unveils an effective and innovative approach to gene discovery, and provides the first evidence that B3GNT1-associated Walker-Warburg syndrome may be considered a ciliopathy. PMID:27508411

  5. Towards all-optical quantification of force- and power-based performance metrics in cilia-driven fluid flow physiology (Conference Presentation)

    Science.gov (United States)

    Huang, Brendan K.; Khokha, Mustafa K.; Loewenberg, Michael; Choma, Michael A.

    2016-03-01

    In pulmonary ciliary physiology, most tissue-level measures of performance focus on flow velocity. However, as with the heart, fluid transport performance requires an understanding of force and power generation under various loading conditions. Here, we present our initial work in quantifying shearing force and net power dissipation from OCT-based cilia-driven fluid flow velocimetry. Typical measurements of force require invasive contact with the ciliated surface, while measurements of power rely on metabolic consumption that reflect energy consumption not just from cilia, but from the entirety of cellular processes. We will present two different approaches to non-contact, all-optical shear force and power dissipation physiology. First, we developed a lumped-parameter model of flow driven by a ciliated surface. The lumped-parameter model yields semi-quantitative, Ohm's law-type relationships (F=U*R and P=U*F) between flow velocity (U), shear force (F), viscous resistance (R), and power dissipation (P). This model allows a lumped (spatially averaged) approach to evaluate force and power performance under viscous loading, an approach we demonstrated using ciliated Xenopus embryos. Second, we numerically estimate shear force and power dissipation using flow velocity fields acquired using OCT. Specifically, the velocity gradient tensor estimated from the flow velocity field contains the required information to estimate both shear force and net power dissipation. We have preliminary data using this numerical approach in Xenopus. Our results support the feasibility of an all-optical approach to estimating mesoscopic measures of force and power in ciliary physiology.

  6. Can fungal zoospores be the source of energy for the rumen protozoa Eudiplodinium maggii?

    Science.gov (United States)

    Miltko, Renata; Bełżecki, Grzegorz; Kowalik, Barbara; Michałowski, Tadeusz

    2014-10-01

    Results of our earlier studies showed the ability of ciliates Eudiplodinium maggii to digest and metabolize commercial chitin. The natural source of this polysaccharide in the rumen are fungi. The objectives of present research were to determine the effect of fungal zoospores on the survival and population density of E. maggii to quantify the concentration of chitin in the cells of protozoa and to examine the ability of E. maggii, to ferment chitin of fungal zoospores. The cultivation experiment showed that the survival of protozoa was shorter than 4 days when the culture medium was composed of buffer solution and lyophilized fungal spores. An enrichment of this medium with wheat gluten prolonged the survival of ciliates up to 8 days. The supplementation of the last medium with meadow hay enabled the protozoa to survive for 28 days but a positive effect was observed only during the last 8 days of experiment. The chitin content was 0.27 ng and 0.21-0.35 ng per single zoospore and ciliate, respectively. An increase in the concentration of volatile fatty acids (VFA) was found when protozoa were incubated with zoospores. The production rate of VFA was 46.3 pM/protozoan per h whereas the endogenous production did not exceed 31 pM/protozoan per h. The molar proportion of acetic acid was 77.7% and these of butyric and propionic acids-12.2 and 11.0%, respectively. The obtained results make it evident that carbohydrates present in fungal zoospores were utilized by protozoa in energy yielding processes. PMID:24012688

  7. Accelerating Gene Discovery by Phenotyping Whole-Genome Sequenced Multi-mutation Strains and Using the Sequence Kernel Association Test (SKAT)

    Science.gov (United States)

    Garland, Stephanie J.; Mohan, Swetha; Flibotte, Stephane; Muncaster, Quintin; Cai, Jerry; Rademakers, Suzanne; Moerman, Donald G.; Leroux, Michel R.

    2016-01-01

    Forward genetic screens represent powerful, unbiased approaches to uncover novel components in any biological process. Such screens suffer from a major bottleneck, however, namely the cloning of corresponding genes causing the phenotypic variation. Reverse genetic screens have been employed as a way to circumvent this issue, but can often be limited in scope. Here we demonstrate an innovative approach to gene discovery. Using C. elegans as a model system, we used a whole-genome sequenced multi-mutation library, from the Million Mutation Project, together with the Sequence Kernel Association Test (SKAT), to rapidly screen for and identify genes associated with a phenotype of interest, namely defects in dye-filling of ciliated sensory neurons. Such anomalies in dye-filling are often associated with the disruption of cilia, organelles which in humans are implicated in sensory physiology (including vision, smell and hearing), development and disease. Beyond identifying several well characterised dye-filling genes, our approach uncovered three genes not previously linked to ciliated sensory neuron development or function. From these putative novel dye-filling genes, we confirmed the involvement of BGNT-1.1 in ciliated sensory neuron function and morphogenesis. BGNT-1.1 functions at the trans-Golgi network of sheath cells (glia) to influence dye-filling and cilium length, in a cell non-autonomous manner. Notably, BGNT-1.1 is the orthologue of human B3GNT1/B4GAT1, a glycosyltransferase associated with Walker-Warburg syndrome (WWS). WWS is a multigenic disorder characterised by muscular dystrophy as well as brain and eye anomalies. Together, our work unveils an effective and innovative approach to gene discovery, and provides the first evidence that B3GNT1-associated Walker-Warburg syndrome may be considered a ciliopathy. PMID:27508411

  8. Effects of heat and moisture exchangers on tracheal mucociliary clearance in laryngectomized patients: a multi-center case-control study.

    Science.gov (United States)

    van den Boer, C; Muller, S H; van der Noort, V; Olmos, R A Valdés; Minni, A; Parrilla, C; Hilgers, F J M; van den Brekel, M W M; van der Baan, S

    2015-11-01

    After total laryngectomy, inspired air is no longer optimally conditioned by the upper airways. Impaired mucociliary clearance and histological changes of respiratory epithelium, such as loss of ciliated cells, have been described in laryngectomized patients. Heat and moisture exchangers (HMEs) are passive humidifiers that re-condition the inspired air. Aim of this study was to assess the effect of HMEs on tracheal epithelium and tracheal mucus transport velocity (TMV). Tracheal brush biopsies were collected in three groups of TLE patients: 21 long-term HME users, 10 non-HME users, and 16 non-HME users before and after 4-9 months HME use. Tracheal epithelium biopsies were assessed using a digital high-speed camera mounted onto a light microscope. TMV was determined by scintigraphy in the first two patient groups. Significantly more ciliated cells were found in HME users compared to non-HME users (p = 0.05). TMV was higher in HME users (median 2 mm/min; 0-7.9) compared to non-HME users (median 0.8 mm/min; 0-12.3), but this difference was not significant (p = 0.37). One-hour breathing without HME in long-term HME users did not measurably decrease TMV (p = 0.13). The long-term use of an HME restores/prevents the loss of tracheal ciliated cells. A significant improvement in TMV was not found. Short-term (one hour) detachment of an HME has no measurable effect on TMV. PMID:25338182

  9. Conservation of ciliary proteins in plants with no cilia

    Directory of Open Access Journals (Sweden)

    Hodges Matthew E

    2011-12-01

    Full Text Available Abstract Background Eukaryotic cilia are complex, highly conserved microtubule-based organelles with a broad phylogenetic distribution. Cilia were present in the last eukaryotic common ancestor and many proteins involved in cilia function have been conserved through eukaryotic diversification. However, cilia have also been lost multiple times in different lineages, with at least two losses occurring within the land plants. Whereas all non-seed plants produce cilia for motility of male gametes, some gymnosperms and all angiosperms lack cilia. During these evolutionary losses, proteins with ancestral ciliary functions may be lost or co-opted into different functions. Results Here we identify a core set of proteins with an inferred ciliary function that are conserved in ciliated eukaryotic species. We interrogate this genomic dataset to identify proteins with a predicted ancestral ciliary role that have been maintained in non-ciliated land plants. In support of our prediction, we demonstrate that several of these proteins have a flagellar localisation in protozoan trypanosomes. The phylogenetic distribution of these genes within the land plants indicates evolutionary scenarios of either sub- or neo-functionalisation and expression data analysis shows that these genes are highly expressed in Arabidopsis thaliana pollen cells. Conclusions A large number of proteins possess a phylogenetic ciliary profile indicative of ciliary function. Remarkably, many genes with an ancestral ciliary role are maintained in non-ciliated land plants. These proteins have been co-opted to perform novel functions, most likely before the loss of cilia, some of which appear related to the formation of the male gametes.

  10. OCT-based three-dimensional, three vector component imaging of cilia-driven fluid flow for developmental biology (Conference Presentation)

    Science.gov (United States)

    Huang, Brendan K.; Zhou, Kevin C.; Gamm, Ute A.; Bhandari, Vineet; Khokha, Mustafa K.; Choma, Michael A.

    2016-03-01

    One critical barrier to the robust study of cilia-driven fluid flow in developmental biology is a lack of methods for acquiring three-dimensional (3D) images of three vector component (3C) measurements of flow velocities. A 3D3C map of cilia-driven fluid flow quantifies the flow speed along three axes (e.g. three Cartesian vector components v_x, v_y, v_z) at each point in 3D space. 3D3C quantification is important because cilia-driven fluid flow is not amenable to simplifying assumptions (e.g. parabolic flow profile. Such quantification may enable systematically detailed characterization of performance using shear force and power dissipation metrics derived from 3D3C flow velocity fields. We report our OCT-based results in developing methods for the 3D3C quantification of cilia-driven flow fields. First, we used custom scan protocols and reconstruction algorithms to synthesize 3D3C flow velocity fields from 2D2C fields generated using correlation-based methods (directional dynamic light scattering and digital particle image velocimetry). Xenopus results include flow driven by ciliated embryo skin and flow driven by ciliated ependymal cells in developing brain ventricles. Second, we developed a new approach to particle tracking velocimetry that generates 2D2.5C (2.5C: v_x,|v_y|,v_z) velocity fields from single-plane 2D image acquisitions. We demonstrated this particle streak velocimetry method in calibrated flow phantoms and in flow driven by ciliated Xenopus embryo skin. Additionally, we have preliminary results extending particle streak velocimetry to 3D3C in calibrated flow phantoms with ongoing work in Xenopus embryos.

  11. Effect of coconut oil and defaunation treatment on methanogenesis in sheep.

    Science.gov (United States)

    Machmüller, Andrea; Soliva, Carla R; Kreuzer, Michael

    2003-01-01

    The present study was conducted to evaluate in vivo the role of rumen ciliate protozoa with respect to the methane-suppressing effect of coconut oil. Three sheep were subjected to a 2 x 2 factorial design comprising two types of dietary lipids (50 g x kg(-1) coconut oil vs. 50 g x kg(-1) rumen-protected fat) and defaunation treatment (with vs. without). Due to the defaunation treatment, which reduced the rumen ciliate protozoa population by 94% on average, total tract fibre degradation was reduced but not the methane production. Feeding coconut oil significantly reduced daily methane release without negatively affecting the total tract nutrient digestion. Compared with the rumen-protected fat diet, coconut oil did not alter the energy retention of the animals. There was no interaction between coconut oil feeding and defaunation treatment in methane production. An interaction occurred in the concentration of methanogens in the rumen fluid, with the significantly highest values occurring when the animals received the coconut oil diet and were subjected to the defaunation treatment. Possible explanations for the apparent inconsistency between the amount of methane produced and the concentration of methane-producing microbes are discussed. Generally, the present data illustrate that a depression of the concentration of ciliate protozoa or methanogens in rumen fluid cannot be used as a reliable indicator for the success of a strategy to mitigate methane emission in vivo. The methane-suppressing effect of coconut oil seems to be mediated through a changed metabolic activity and/or composition of the rumen methanogenic population. PMID:12785449

  12. Magnetic effects in cellular and molecular systems

    International Nuclear Information System (INIS)

    Brief discussions are presented of six aspects of the phenomenon. Individual topics discussed include: (1) mechanisms of magnetic field interactions with retinal rods; (2) orientation of biological membranes and cells in magnetic fields; (3) enzyme-substrate reactions in high magnetic fields; (4) effects on cell function resulting from exposure to strong magnetic fields at 40K; (5) effects of a transverse magnetic field on the dose distribution of high energy electrons and in the responses of mammalian cells in vitro to x rays; and (6) effect of magnetic fields on the drug-induced contractility of the ciliate Spirostomum

  13. Microorganism dynamics during a rising tide: Disentangling effects of resuspension and mixing with offshore waters above an intertidal mudflat

    Science.gov (United States)

    Guizien, Katell; Dupuy, Christine; Ory, Pascaline; Montanié, Hélène; Hartmann, Hans; Chatelain, Mathieu; Karpytchev, Mikhaïl

    2014-01-01

    Resuspension of microphytobenthic biomass that builds up during low tide has been acknowledged as a major driver of the highly productive food web of intertidal mudflats. Yet, little is known about the contribution to pelagic food web of the resuspension of other microorganisms such as viruses, picoeukaryotes, cyanobacteria, bacteria, nanoflagellates, and ciliates, living in biofilms associated with microphytobenthos and surficial sediment. In the present study, a novel approach that involves simultaneous Lagrangian and Eulerian surveys enabled to disentangle the effects of resuspension and mixing with offshore waters on the dynamics of water column microorganisms during a rising tide in the presence of waves. Temporal changes in the concentration of microorganisms present in the water column were recorded along a 3 km cross-shore transect and at a fixed subtidal location. In both surveys, physical and biological processes were separated by comparing the time-evolution of sedimentary particles and microorganism concentrations. During a rising tide, sediment erosion under wave action occurred over the lower and upper parts of the mudflat, where erodibility was highest. Although erosion was expected to enrich the water column with the most abundant benthic microorganisms, such as diatoms, bacteria and viruses, enrichment was only observed for nanoflagellates and ciliates. Grazing probably overwhelmed erosion transfer for diatoms and bacteria, while adsorption on clayed particles may have masked the expected water column enrichment in free viruses due to resuspension. Ciliate enrichment could not be attributed to resuspension as those organisms were absent from the sediment. Wave agitation during the water flow on the mudflat likely dispersed gregarious ciliates over the entire water column. During the rising tide, offshore waters imported more autotrophic, mainly cyanobacteria genus Synechococcus sp. than heterotrophic microorganisms, but this import was also heavily

  14. Parasites as possible cause of mass mortalities of the critically endangered clam Mesodesma mactroides on the Atlantic coast of Argentina

    OpenAIRE

    Cremonte, Florencia; Figueras, Antonio

    2004-01-01

    A survey of the health status of the yellow clam Mesodesma mactroides was performed to contribute to establish the causes of mass mortality episodes. A sample of 32 clams was collected from Isla del Jabalí (40°32’S- 62°21’W, Buenos Aires province, Argentina), a relict population by 1999, that two years later suffered a mass mortality. Microscopical examination of the histological sections revealed the presence of four parasitic or commensal taxa: Trichodina sp. ciliates, coccidian...

  15. Subtraction by addition: domesticated transposases in programmed DNA elimination

    Science.gov (United States)

    Motl, Jason A.; Chalker, Douglas L.

    2009-01-01

    The ciliate Paramecium tetraurelia must eliminate ∼60,000 short sequences from its genome to generate uninterrupted coding sequences in its somatic macronucleus. In this issue of Genes & Development, Baudry and colleagues (pp. 2478–2483) identify the protein that excises these noncoding sequences: a domesticated piggyBac transposase that has been adapted to remove what are likely the remnants of transposon insertions. This new study reveals how addition of a transposase to small RNA-directed silencing machinery can guide major genome reorganization. PMID:19884252

  16. Comparative study of infection with Tetrahymena of different ornamental fish species

    DEFF Research Database (Denmark)

    Sharon, G.; Leibowitz, M. Pimenta; Chettri, Jiwan Kumar;

    2014-01-01

    Tetrahymena is a ciliated protozoan that can infect a wide range of fish species, although it is most commonly reported in guppies (Poecilia reticulata). The aim of this study was to compare the susceptibility to infection with Tetrahymena of five different ornamental fish species from two....... These two super orders are phylogenetically distant from each other. Infection with Tetrahymena resulted in parasite invasion of internal organs, skin and muscle in all fish species. A relatively strong inflammatory response was observed in infected goldfish and koi, with negligible response in fish species...

  17. Abundance, biomass and size structure of the microbial assemblage in the high mountain lake Gossenköllesee (Tyrol, Austria during the ice-free period

    Directory of Open Access Journals (Sweden)

    Roland PSENNER

    1999-08-01

    Full Text Available The abundance, biomass and morphology of the microbial components (picocyanobacteria, heterotrophic bacteria, heterotrophic and autotrophic nanoflagellates, ciliates of the pelagic food web of Gossenköllesee were investigated over two summer periods. The density of bacteria remained relatively stable not only over time but also in vertical profiles (2.5-5.5x105 cells ml-1. Bacterial biomass ranged between 35 to 63 mgC m-2 (5.4-15.3 μgC l-1. Small rod shaped bacteria with mean cell volumes of ~0.05 μm3 dominated numerically but filamentous forms (longer than 10 μm, mainly found in the upper water layers, amounting to more than 65% of the total bacterial biomass, increased the mean cell volume up to 0.27 μm3 (SD=0.88. Bacterial biomass represented between 48 and 86% of the total microbial biomass (40 - 90 mgC m-2, however at 8 m depth the biomass of heterotrophic flagellates (HNF reached up to 26 mgC m-3 (2,852 cells ml-1. From 0-4 m depth small spherical HNF species with cell volumes 3 were dominant, whereas in deeper water layers large flagellates with cell volumes >50 μm3 dominated throughout the sampling period. Ciliate abundance was low in the upper part of the water column. Only Askenasia chlorelligera and Urotricha cf pelagica occurred with numbers of up to 1,500 cells l-1. At 8 m depth, Balanion planctonicum was the dominant species throughout the study period reaching numbers of up to 16,000 cells l-1. Ciliate abundance was significantly correlated with chlorophyll-a concentrations (rs=0.55, p <0.01 confirming the algivory of the dominant species. No significant correlation was found between the parameters of chlorophylla, bacteria and HNF but the abundance of ciliates was negatively correlated with the length of bacteria (rs= -0.41, p <0.05.

  18. Foregut duplication cysts of the stomach with respiratory epithelium

    Institute of Scientific and Technical Information of China (English)

    Theodosios Theodosopoulos; Athanasios Marinis; Konstantinos Karapanos; Georgios Vassilikostas; Nikolaos Dafnios; Lazaros Samanides; Eleni Carvounis

    2007-01-01

    Gastrointestinal duplication is a congenital rare disease entity. Gastric duplication cysts seem to appear even more rarely. Herein, two duplications cysts of the stomach in a 46 year-old female patient are presented.Abdominal computed tomography demonstrated a cystic lesion attached to the posterior aspect of the gastric fundus, while upper gastrointestinal endoscopy was negative. An exploratory laparotomy revealed a non-communicating cyst and a smaller similar cyst embedded in the gastrosplenic ligament. Excision of both cysts along with the spleen was performed and pathology reported two smooth muscle coated cysts with a pseudostratified ciliated epithelial lining (respiratory type).

  19. From zebrafish heart jogging genes to mouse and human orthologs: using Gene Ontology to investigate mammalian heart development.

    OpenAIRE

    Khodiyar, Varsha K.; Doug Howe; Talmud, Philippa J; Ross Breckenridge; Lovering, Ruth C.

    2014-01-01

    For the majority of organs in developing vertebrate embryos, left-right asymmetry is controlled by a ciliated region; the left-right organizer node in the mouse and human, and the Kuppfer’s vesicle in the zebrafish. In the zebrafish, laterality cues from the Kuppfer’s vesicle determine asymmetry in the developing heart, the direction of ‘heart jogging’ and the direction of ‘heart looping’.  ‘Heart jogging’ is the term given to the process by which the symmetrical zebrafish heart tube is displ...

  20. From zebrafish heart jogging genes to mouse and human orthologs: using Gene Ontology to investigate mammalian heart development. [v1; ref status: indexed, http://f1000r.es/28b

    OpenAIRE

    Khodiyar, Varsha K.; Doug Howe; Talmud, Philippa J; Ross Breckenridge; Lovering, Ruth C.

    2013-01-01

    For the majority of organs in developing vertebrate embryos, left-right asymmetry is controlled by a ciliated region; the left-right organizer node in the mouse and human, and the Kuppfer’s vesicle in the zebrafish. In the zebrafish, laterality cues from the Kuppfer’s vesicle determine asymmetry in the developing heart, the direction of ‘heart jogging’ and the direction of ‘heart looping’.  ‘Heart jogging’ is the term given to the process by which the symmetrical zebrafish heart tube is displ...

  1. Qualitative importance of the microbial loop and plankton community structure in a eutropic lake during a bloom of Cyanobacteria

    DEFF Research Database (Denmark)

    Christoffersen, K.

    1990-01-01

    Plankton community structure and m~or pools and fluxes of carbon were observed before and after culmination of a bloom of cyanobacteria in eutrophic Frederiksborg Slotsso, Denmark. Biomass changes of heterotrophic nanoflagellates, ciliates, microzooplankton (50 to 140 urn), and macrozooplankton...... smaller than 20 um replaced Aphanizornenon after the culmination of cyanobacteria. Bacterial net production peaked shortly after the culmination of the bloom (510 ug C liter- 1 d-') and decreased thereafter to a level of approximately 124 gg C liter-' d -~. Phytoplankton extracellular release of organic...

  2. Phylogenetic evidence for the acquisition of ribosomal RNA introns subsequent to the divergence of some of the major Tetrahymena groups

    DEFF Research Database (Denmark)

    Sogin, M L; Ingold, A; Karlok, M;

    1986-01-01

    Previous work has demonstrated the presence of a self-splicing intron in the large subunit ribosomal RNA coding region in some strains of the ciliate protozoan Tetrahymena. Sequence comparisons of the intron regions from six Tetrahymena species showed these to fall into three homology groups. In an...... attempt to evaluate the evolutionary origins of the intervening sequences, we have now determined complete small subunit ribosomal RNA gene sequences from 13 species of Tetrahymena and the absolute number of nucleotide differences between the sequences was used to construct a phylogenetic tree. This...

  3. A retroperitoneal foregut duplication cyst: a case report

    Energy Technology Data Exchange (ETDEWEB)

    Kim, Yong Woon; Lee, Jin Hee; Byun, Kyung Hwan; Kim, Byung Ki; Sohn, Kyung Sik; Kee, Se Kook; Jeon, Jin Min [Pochon CHA University, Kumi CHA Hospital, Kumi (Korea, Republic of); Yun, Young Kook [College of Medicine, Kyungpook National University, Daegu (Korea, Republic of)

    2006-01-15

    Retroperitoneal foregut duplication cyst is an extremely rare congenital malformation. Pathologically, this lesion contains both gastric mucosa and respiratory type mucosa; radiologically, it is often challenging to differentiate it from the other cystic neoplasms that present a similar appearance. We report on a case of retroperitoneal foregut duplication cyst that was lined by both gastric and pseudostratified ciliated columnar epithelium, and it was also accompanied by a pancreatic pseudocyst. Initially, it presented with peripancreatic and intrapancreatic cystic masses in an asymptomatic 30-year-old man, and this man has since undergone surgical resection.

  4. The lissencephaly protein Lis1 is present in motile mammalian cilia and requires outer arm dynein for targeting to Chlamydomonas flagella

    DEFF Research Database (Denmark)

    Pedersen, Lotte B; Rompolas, Panteleimon; Christensen, Søren T;

    2007-01-01

    . Several proteins required for nuclear migration in Aspergillus bind directly to Lis1, including NudC. Mammalian NudC is highly expressed in ciliated epithelia, and localizes to motile cilia in various tissues. Moreover, a NudC ortholog is upregulated upon deflagellation in Chlamydomonas. We found that...... mammalian Lis1 localizes to motile cilia in trachea and oviduct, but is absent from non-motile primary cilia. Furthermore, we cloned a gene encoding a Lis1-like protein (CrLis1) from Chlamydomonas. CrLis1 is a approximately 37 kDa protein that contains seven WD-repeat domains, similar to Lis1 proteins from...

  5. Sox17 and Chordin are required for formation of Kupffer’s vesicle and Left-Right asymmetry determination in zebrafish

    OpenAIRE

    Aamar, Emil; Dawid, Igor B.

    2010-01-01

    Kupffer’s vesicle (KV), a ciliated fluid-filled sphere in the zebrafish embryo with a critical role in laterality determination, is derived from a group of superficial cells in the organizer region of the gastrula named the dorsal forerunner cells (DFC). We have examined the role of the expression of sox17 and chordin (chd) in the DFC in KV formation and laterality determination. Whereas sox17 was known to be expressed in DFC, its function in these cells was not studied before. Further, expre...

  6. Phylogenetic position of the genus Perkinsus (Protista, Apicomplexa) based on small subunit ribosomal RNA.

    Science.gov (United States)

    Goggin, C L; Barker, S C

    1993-07-01

    Parasites of the genus Perkinsus destroy marine molluscs worldwide. Their phylogenetic position within the kingdom Protista is controversial. Nucleotide sequence data (1792 bp) from the small subunit rRNA gene of Perkinsus sp. from Anadara trapezia (Mollusca: Bivalvia) from Moreton Bay, Queensland, was used to examine the phylogenetic affinities of this enigmatic genus. These data were aligned with nucleotide sequences from 6 apicomplexans, 3 ciliates, 3 flagellates, a dinoflagellate, 3 fungi, maize and human. Phylogenetic trees were constructed after analysis with maximum parsimony and distance matrix methods. Our analyses indicate that Perkinsus is phylogenetically closer to dinoflagellates and to coccidean and piroplasm apicomplexans than to fungi or flagellates. PMID:8366895

  7. Of tests, trochs, shells, and spicules: Development of the basal mollusk Wirenia argentea (Solenogastres) and its bearing on the evolution of trochozoan larval key features

    DEFF Research Database (Denmark)

    Todt, Christiane; Wanninger, Andreas

    2010-01-01

    are incomplete and need confirmation. RESULTS: Wirenia argentea deposit small batches of uncleaved embryos that are tightly enclosed by a smooth and transparent egg hull. Cleavage is spiral and unequal. The ciliated larvae hatch about 45 hours after deposition and swim actively in the water column. Within 48...... a terminal ciliary band (telotroch). Obscured by the apical cap, a ciliary band originates in the stomodaeal pore and surrounds the trunk. As development is proceeding, the trunk elongates and becomes covered by cuticle with the exception of a ventral ciliary band, the future foot. The larvae have a pair...

  8. A karyotypic study of the genus Vulpia Gmel. (Poaceae) in Iran

    OpenAIRE

    Amene Faramarzi; Hojatollah Saeidi

    2011-01-01

    Based on the morphological investigations, 5 sepcies of the genus Vulpia grow in Iran. This study concerns the cytotaxonomy of the genus Vulpia Gmel. in Iran. A total of 8 accessions belonging to V. unilateralis, V. myuros, V. persica, V. ciliata and V. hirtiglumis were examined. Mitosis were counted from three root tips of each accession. Diploid numbers counted were 2n=14, 28, 35, 42 with baisic chromosome number x=7. The pentaploidy (2n=5x=35) was observed in V. persica, V. ciliate and V. ...

  9. Retinal morphology in patients with BBS1 and BBS10 related Bardet–Biedl Syndrome evaluated by Fourier-domain optical coherence tomography

    OpenAIRE

    Gerth, C.; Zawadzki, RJ; Werner, JS; Heon, E

    2007-01-01

    Retinal dystrophy in Bardet–Biedl Syndrome (BBS) is caused by defective genes that are expressed within ciliated cells such as photoreceptors. The purpose of this study was to characterize and compare the retinal structure and lamination of two groups of patients, carrying mutations in BBS1 or BBS10. Eight patients with BBS (ages 11.9–28.5 years) and mutations in BBS1 (4/8) or BBS10 (4/8) were tested. A high-resolution hand-held probe Fourier-domain optical coherence tomography system (Fd-OCT...

  10. Egg production rates of the copepod Calanus marshallae in relation to seasonal and interannual variations in microplankton biomass and species composition in the coastal upwelling zone off Oregon, USA

    Science.gov (United States)

    Peterson, William T.; Du, Xiuning

    2015-11-01

    In this study, we assessed trophic interactions between microplankton and copepods by studying the functional response of egg production rates (EPR; eggs female-1 day-1) of the copepod Calanus marshallae to variations in microplankton biomass, species composition and community structure. Female C. marshallae and phytoplankton water samples were collected biweekly at an inner-shelf station off Newport, Oregon USA for four years, 2011-2014, during which a total of 1213 female C. marshallae were incubated in 63 experiments. On average, 80% of the females spawned with an overall mean EPR of 30.4. EPRs in spring (Apr-May, average of 40.2) were significantly higher than summer (Jun-Oct; 26.4). EPRs were intermediate in winter (Jan-Feb; 32.5). Interannually, EPRs were significantly higher in 2014 than 2011 and 2012. Total chlorophyll a (Chl a) concentration and diatom abundance both were significantly higher in summer while no seasonal differences were found in abundance of dinoflagellates, ciliates or Cryptophytes. Although total Chl a showed no interannual differences in bulk biomass of phytoplankton, community structure analysis indicated differences among years. More diverse diatom communities were observed in 2013 and 2014 compared to 2011 and 2012. Relationships between EPR and potential food variables (phytoplankton and ciliates) were significant by season: a hyperbolic functional response was found between EPR and total Chl a in winter-spring and summer, separately, and between EPR and ciliate abundance in winter-spring; a linear model fit best the functional response of EPR to diatom abundance in summer. The estimate of potential population recruitment rate (the number of females × EPR; eggs day-1 m-2) was highest in spring (Apr-May), and annually was highest in 2013 (11,660), followed by 2011 (6209), 2012 (3172) and 2014 (1480). Our observations of in situ EPR were far higher than published laboratory rates of 23.5, calling into question our past laboratory

  11. Repair of tracheal epithelium by basal cells after chlorine-induced injury

    Directory of Open Access Journals (Sweden)

    Musah Sadiatu

    2012-11-01

    Full Text Available Abstract Background Chlorine is a widely used toxic compound that is considered a chemical threat agent. Chlorine inhalation injures airway epithelial cells, leading to pulmonary abnormalities. Efficient repair of injured epithelium is necessary to restore normal lung structure and function. The objective of the current study was to characterize repair of the tracheal epithelium after acute chlorine injury. Methods C57BL/6 mice were exposed to chlorine and injected with 5-ethynyl-2′-deoxyuridine (EdU to label proliferating cells prior to sacrifice and collection of tracheas on days 2, 4, 7, and 10 after exposure. Airway repair and restoration of a differentiated epithelium were examined by co-localization of EdU labeling with markers for the three major tracheal epithelial cell types [keratin 5 (K5 and keratin 14 (K14 for basal cells, Clara cell secretory protein (CCSP for Clara cells, and acetylated tubulin (AcTub for ciliated cells]. Morphometric analysis was used to measure proliferation and restoration of a pseudostratified epithelium. Results Epithelial repair was fastest and most extensive in proximal trachea compared with middle and distal trachea. In unexposed mice, cell proliferation was minimal, all basal cells expressed K5, and K14-expressing basal cells were absent from most sections. Chlorine exposure resulted in the sloughing of Clara and ciliated cells from the tracheal epithelium. Two to four days after chlorine exposure, cell proliferation occurred in K5- and K14-expressing basal cells, and the number of K14 cells was dramatically increased. In the period of peak cell proliferation, few if any ciliated or Clara cells were detected in repairing trachea. Expression of ciliated and Clara cell markers was detected at later times (days 7–10, but cell proliferation was not detected in areas in which these differentiated markers were re-expressed. Fibrotic lesions were observed at days 7–10 primarily in distal trachea. Conclusion

  12. Phenomenological modeling of the motility of self-propelled microorganisms

    CERN Document Server

    Zaoli, Silvia; Formentin, Marco; Azaele, Sandro; Rinaldo, Andrea; Maritan, Amos

    2014-01-01

    The motility of microorganisms in liquid media is an important issue in active matter and it is not yet fully understood. Previous theoretical approaches dealing with the microscopic description of microbial movement have modeled the propelling force exerted by the organism as a Gaussian white noise term in the equation of motion. We present experimental results for ciliates of the genus Colpidium, which do not agree with the Gaussian white noise hypothesis. We propose a new stochastic model that goes beyond such assumption and displays good agreement with the experimental statistics of motion, such as velocity distribution and velocity autocorrelation.

  13. Structural Composition of Protozooplankton Communities in Relation to Environmental Factors in Shallow Lakes and Reservoirs of Rīga, Latvia

    Directory of Open Access Journals (Sweden)

    Buholce Linda

    2015-08-01

    Full Text Available Protozooplankton are dominant grazers of phytoplankton and an important component of the microbial food web, as a link between pico and nanoplankton to higher trophic levels. Their fast growing rate, relative abundance, biomass and diversity are used as indicators of organic and toxic pollution. The impact of urbanisation on ecosystems and their sustainability and biodiversity have recently been much studied. We studied the protozooplankton ciliate communities during the vegetation period from April to October in two small lakes (Bābelītis, Gaiļezers and two reservoirs (Bolderāja, Saurieši. The largest peak of biomass (15.7 × 102 mg/l was found in Gaiļezers Lake in August and of abundance (60.2 × 103 org/l in Bābelītis Lake in July. The lowest biomass (0.006 mg/l and abundance (0.12 × 103 org/l were found in the Saurieši Reservoir station. The most abundant ciliates were from the order Oligotrichida.

  14. Trophic level stability-inducing effects of predaceous early juvenile fish in an estuarine mesocosm study.

    Directory of Open Access Journals (Sweden)

    Ryan J Wasserman

    Full Text Available BACKGROUND: Classically, estuarine planktonic research has focussed largely on the physico-chemical drivers of community assemblages leaving a paucity of information on important biological interactions. METHODOLOGY/PRINCIPAL FINDINGS: Within the context of trophic cascades, various treatments using in situ mesocosms were established in a closed estuary to highlight the importance of predation in stabilizing estuarine plankton abundances. Through either the removal (filtration or addition of certain planktonic groups, five different trophic systems were established. These treatments contained varied numbers of trophic levels and thus different "predators" at the top of the food chain. The abundances of zooplankton (copepod and polychaete, ciliate, micro-flagellate, nano-flagellate and bacteria were investigated in each treatment, over time. The reference treatment containing apex zooplanktivores (early juvenile mullet and plankton at natural densities mimicked a natural, stable state of an estuary. Proportional variability (PV and coefficient of variation (CV of temporal abundances were calculated for each taxon and showed that apex predators in this experimental ecosystem, when compared to the other systems, induced stability. The presence of these predators therefore had consequences for multiple trophic levels, consistent with trophic cascade theory. CONCLUSIONS/SIGNIFICANCE: PV and CV proved useful indices for comparing stability. Apex predators exerted a stabilizing pressure through feeding on copepods and polychaetes which cascaded through the ciliates, micro-flagellates, nano-flagellates and bacteria. When compared with treatments without apex predators, the role of predation in structuring planktonic communities in closed estuaries was highlighted.

  15. Distribution of micro-organisms along a transect in the South-East Pacific Ocean (BIOSOPE cruise) from epifluorescence microscopy

    Science.gov (United States)

    Masquelier, S.; Vaulot, D.

    2007-08-01

    The distribution of selected groups of micro-organisms was analyzed along a South-East Pacific Ocean transect sampled during the BIOSOPE cruise in 2004. The transect could be divided into four regions of contrasted trophic status: a high Nutrient Low Chlorophyll (HNLC) region (mesotrophic) near the equator, the South-East Pacific Ocean gyre (hyper-oligotrophic), the transition region between the gyre and the coast of South America (moderately oligotrophic), and the Chile upwelling (eutrophic). The abundance of phycoerythrin containing picocyanobacteria, autotrophic and heterotrophic eukaryotes in different size ranges, dinoflagellates, and ciliates was determined by epifluorescence microscopy after DAPI staining. All populations reached a maximum in the Chile upwelling and a minimum near the centre of the gyre. Picocyanobacteria reached a maximum abundance of 70×10³ cell mL-1. In the HNLC zone, up to 50% of picocyanobacteria formed colonies. Autotrophic eukaryote and dinoflagellate abundance reached 24.5×10³ and 200 cell mL-1, respectively. We observed a shift in the size distribution of autotrophic eukaryotes from 2-5 μm in eutrophic and mesotrophic regions to less than 2 μm in the central region. The contribution of autotrophic eukaryotes to total eukaryotes was the lowest in the central gyre. Maximum concentration of ciliates (18 cell ml-1) also occurred in the Chile upwelling, but, in contrast to the other groups, their abundance was very low in the HNLC zone and near the Marquesas Islands.

  16. Cilia containing 9 + 2 structures grown from immortalized cells

    Institute of Scientific and Technical Information of China (English)

    Ming Zhang; Jose G Assouline

    2007-01-01

    Cilia depend on their highly differentiated structure, a 9 + 2 arrangement, to remove particles from the lung and to transport reproductive cells. Immortalized cells could potentially be of great use in cilia research. Immortalization of cells with cilia structure containing the 9 + 2 arrangement might be able to generate cell lines with such cilia structure. However, whether immortalized cells can retain such a highly differentiated structure remains unclear. Here we demonstrate that (1) using E1a gene transfection, tracheal cells are immortalized; (2) interestingly, in a gel culture the immortalized cells form spherical aggregations within which a lumen is developed; and (3) surprisingly, inside the aggregation, cilia containing a 9 + 2 arrangement grow from the cell's apical pole and protrude into the lumen. These results may influence future research in many areas such as understanding the mechanisms of cilia differentiation, cilia generation in other existing cell lines, cilia disorders, generation of other highly differentiated structures besides cilia using the gel culture,immortalization of other ciliated cells with the E1a gene, development of cilia motile function, and establishment of a research model to provide uniform ciliated cells.

  17. Histochemical and ultrastructural analyses of the lubrication systems in the olfactory organs of soft-shelled turtle.

    Science.gov (United States)

    Nakamuta, Shoko; Yokosuka, Makoto; Taniguchi, Kazumi; Yamamoto, Yoshio; Nakamuta, Nobuaki

    2016-06-01

    In general, the nasal cavity of turtles is divided into two chambers: the upper chamber, lined with the olfactory epithelium containing ciliated olfactory receptor cells, and the lower chamber, lined with the vomeronasal epithelium containing microvillous receptor cells. In the nasal cavity of soft-shelled turtles, however, differences between the upper and lower chamber epithelia are unclear due to the presence of ciliated receptor cells in both epithelia. In the olfactory organ of vertebrates, the surface of sensory epithelium is covered with secretory products of associated glands and supporting cells, playing important roles in the olfaction by dissolving odorants and transporting them to the olfactory receptors. Here, the associated glands and supporting cells in the olfactory organ of soft-shelled turtles were analyzed histochemically and ultrastructurally. The upper chamber epithelium possessed associated glands, constituted by cells containing serous secretory granules; whereas, the lower chamber epithelium did not. In the upper chamber epithelium, secretory granules filled the supranuclear region of supporting cells, while most of the granules were distributed near the free border of supporting cells in the lower chamber epithelium. The secretory granules in the supporting cells of both epithelia were seromucous, but alcian blue stained them differently from each other. In addition, distinct expression of carbohydrates was suggested by the differences in lectin binding. These data indicate the quantitative and qualitative differences in the secretory properties between the upper and lower chamber epithelia, suggesting their distinct roles in the olfaction. PMID:26782135

  18. Morphological study on the olfactory systems of the snapping turtle, Chelydra serpentina.

    Science.gov (United States)

    Nakamuta, Nobuaki; Nakamuta, Shoko; Kato, Hideaki; Yamamoto, Yoshio

    2016-06-01

    In this study, the olfactory system of a semi-aquatic turtle, the snapping turtle, has been morphologically investigated by electron microscopy, immunohistochemistry, and lectin histochemistry. The nasal cavity of snapping turtle was divided into the upper and lower chambers, lined by the sensory epithelium containing ciliated and non-ciliated olfactory receptor neurons, respectively. Each neuron expressed both Gαolf, the α-subunit of G-proteins coupling to the odorant receptors, and Gαo, the α-subunit of G-proteins coupling to the type 2 vomeronasal receptors. The axons originating from the upper chamber epithelium projected to the ventral part of the olfactory bulb, while those from the lower chamber epithelium to the dorsal part of the olfactory bulb. Despite the identical expression of G-protein α-subunits in the olfactory receptor neurons, these two projections were clearly distinguished from each other by the differential expression of glycoconjugates. In conclusion, these data indicate the presence of two types of olfactory systems in the snapping turtle. Topographic arrangement of the upper and lower chambers and lack of the associated glands in the lower chamber epithelium suggest their possible involvement in the detection of odorants: upper chamber epithelium in the air and the lower chamber epithelium in the water. PMID:27059760

  19. Phosphatidylinositol phosphate kinase PIPKIγ and phosphatase INPP5E coordinate initiation of ciliogenesis.

    Science.gov (United States)

    Xu, Qingwen; Zhang, Yuxia; Wei, Qing; Huang, Yan; Hu, Jinghua; Ling, Kun

    2016-01-01

    Defective primary cilia are causative to a wide spectrum of human genetic disorders, termed ciliopathies. Although the regulation of ciliogenesis is intensively studied, how it is initiated remains unclear. Here we show that type Iγ phosphatidylinositol 4-phosphate (PtdIns(4)P) 5-kinase (PIPKIγ) and inositol polyphosphate-5-phosphatase E (INPP5E), a Joubert syndrome protein, localize to the centrosome and coordinate the initiation of ciliogenesis. PIPKIγ counteracts INPP5E in regulating tau-tubulin kinase-2 (TTBK2) recruitment to the basal body, which promotes the removal of microtubule capping protein CP110 and the subsequent axoneme elongation. Interestingly, INPP5E and its product-PtdIns(4)P-accumulate at the centrosome/basal body in non-ciliated, but not ciliated, cells. PtdIns(4)P binding to TTBK2 and the distal appendage protein CEP164 compromises the TTBK2-CEP164 interaction and inhibits the recruitment of TTBK2. Our results reveal that PtdIns(4)P homoeostasis, coordinated by PIPKIγ and INPP5E at the centrosome/ciliary base, is vital for ciliogenesis by regulating the CEP164-dependent recruitment of TTBK2. PMID:26916822

  20. Histopathological survey of the mussel Mytilus chilensis (Mytilidae and the clam Gari solida (Psammobiidae from southern Chile

    Directory of Open Access Journals (Sweden)

    Florencia Cremonte

    2015-03-01

    Full Text Available A total of 175 specimens of mussels, Mytilus chilensis (Mytilidae, and 56 specimens of clams, Gari solida (Psammobiidae, were collected in natural beds and culture sites of southern Chile. Juvenile mussel specimens (3 cm of maximum length were free of parasites and diseases, whilst the commercial sized populations was parasitized by intracellular inclusions of bacteria-like organisms in the digestive gland epithelium and in the gills, by ciliates in the gills, turbellarians similar to Paravortex (Rhabocoela in the intestine lumen and copepods attached to the gills. In addition, the disseminated neoplasia disease was also present although in low prevalences. In the clam, G. solida, prokariotic inclusions were found in the digestive gland epithelium and bacteria-like organisms in the gills, often encapsulated by haemocytes; oocysts containing up to 8 sporozoites similar to Nematopsis (Apicomplexa in the connective tissue, causing haemocytic infiltration when the intensity of infection was high; ciliates belonging to two different species (one of them similar to Trichodina inhabiting the gills; and a turbellarian similar to Paravortex in the lumen of digestive system without apparent host reaction. The populations of the bivalve species here studied were devoid of serious pathogens.