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Sample records for chromosome sorting

  1. Chromosome analysis and sorting

    Czech Academy of Sciences Publication Activity Database

    Doležel, Jaroslav; Kubaláková, Marie; Suchánková, Pavla; Kovářová, Pavlína; Bartoš, Jan; Šimková, Hana

    Weinheim : Wiley-VCH, 2007 - (Doležel, J.; Greilhuber, J.; Suda, J.), s. 373-403 ISBN 978-3-527-31487-4 R&D Projects: GA ČR GA521/04/0607; GA ČR GP521/05/P257; GA ČR GD521/05/H013; GA MŠk(CZ) LC06004 Grant ostatní: Mendelova zemědělská a lesnická univerzita v Brně / Agronomická fakulta(CZ) ME 844 Institutional research plan: CEZ:AV0Z5038910 Source of funding: V - iné verejné zdroje ; V - iné verejné zdroje ; V - iné verejné zdroje ; V - iné verejné zdroje ; V - iné verejné zdroje Keywords : Plant flow cytometry * chromosome sorting * flow cytogenetics Subject RIV: EB - Genetics ; Molecular Biology http://books. google .com/books?id=3cwakORieqUC&pg=PA373&lpg=PA373&dq=Chromosome+analysis+and+sorting&source=web&ots=8IyvJlBQyq&sig=_NlXyQQgBCwpj1pTC9YITvvVZqU

  2. Chromosome Analysis and Sorting Using Flow Cytometry

    Czech Academy of Sciences Publication Activity Database

    Doležel, Jaroslav; Kubaláková, Marie; Čihalíková, Jarmila; Suchánková, Pavla; Šimková, Hana

    New Jersey : Humana Press, 2011 - (Birchler, J.), s. 221-237 ISBN 978-1-61737-956-7 R&D Projects: GA ČR GA521/07/1573; GA MŠk(CZ) LC06004 Institutional research plan: CEZ:AV0Z50380511 Keywords : Chromosome analysis * flow cytometry * root meristems Subject RIV: EB - Genetics ; Molecular Biology

  3. Flow cytometric chromosome sorting in plants: The next generation

    Czech Academy of Sciences Publication Activity Database

    Vrána, Jan; Šimková, Hana; Kubaláková, Marie; Čihalíková, Jarmila; Doležel, Jaroslav

    2012-01-01

    Roč. 57, č. 3 (2012), s. 331-337. ISSN 1046-2023 R&D Projects: GA ČR GAP501/10/1740 Grant ostatní: GA MŠk(CZ) ED0007/01/01 Institutional research plan: CEZ:AV0Z50380511 Keywords : Chromosome sorting * Flow cytometry * Fluorescence in situ hybridization Subject RIV: EB - Genetics ; Molecular Biology Impact factor: 3.641, year: 2012

  4. Hyperexpansion of wheat chromosomes sorted by flow cytometry

    Czech Academy of Sciences Publication Activity Database

    Endo, Takashi R.; Kubaláková, Marie; Vrána, Jan; Doležel, Jaroslav

    2014-01-01

    Roč. 89, č. 4 (2014), s. 181-185. ISSN 1341-7568 R&D Projects: GA MŠk(CZ) LO1204 Institutional support: RVO:61389030 Keywords : flow cytometry * flow sorting * chromosome Subject RIV: EB - Genetics ; Molecular Biology Impact factor: 0.930, year: 2014 http://gateway.isiknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=Alerting&SrcApp=Alerting&DestApp=MEDLINE&DestLinkType=FullRecord&UT=25747042

  5. Construction of BAC Libraries from Flow-Sorted Chromosomes.

    Science.gov (United States)

    Šafář, Jan; Šimková, Hana; Doležel, Jaroslav

    2016-01-01

    Cloned DNA libraries in bacterial artificial chromosome (BAC) are the most widely used form of large-insert DNA libraries. BAC libraries are typically represented by ordered clones derived from genomic DNA of a particular organism. In the case of large eukaryotic genomes, whole-genome libraries consist of a hundred thousand to a million clones, which make their handling and screening a daunting task. The labor and cost of working with whole-genome libraries can be greatly reduced by constructing a library derived from a smaller part of the genome. Here we describe construction of BAC libraries from mitotic chromosomes purified by flow cytometric sorting. Chromosome-specific BAC libraries facilitate positional gene cloning, physical mapping, and sequencing in complex plant genomes. PMID:27511172

  6. Sorting of mitotic chromosomes in common wheat (Triticum aestivum L.) using flow cytometry

    Czech Academy of Sciences Publication Activity Database

    Vrána, Jan; Šimková, Hana; Kubaláková, Marie; Čihalíková, Jarmila; Lysák, Martin; Doležel, Jaroslav

    Dordrecht : Kluwer, 2001, s. 531-536 R&D Projects: GA AV ČR IBS5038104 Institutional research plan: CEZ:AV0Z5038910 Keywords : chromosome isolation * chromosome sorting * flow cytometry Subject RIV: EB - Genetics ; Molecular Biology

  7. Tracking chromosome evolution in southern African gerbils using flow-sorted chromosome paints.

    Science.gov (United States)

    Knight, L I; Ng, B L; Cheng, W; Fu, B; Yang, F; Rambau, R V

    2013-01-01

    Desmodillus and Gerbilliscus (formerly Tatera) comprise a monophyletic group of gerbils (subfamily Gerbillinae) which last shared an ancestor approximately 8 million years ago; diploid chromosome number variation among the species ranges from 2n = 36 to 2n = 50. In an attempt to shed more light on chromosome evolution and speciation in these rodents, we compared the karyotypes of 7 species, representing 3 genera, based on homology data revealed by chromosome painting with probes derived from flow-sorted chromosomes of the hairy footed gerbil, Gerbillurus paeba (2n = 36). The fluorescent in situ hybridization data revealed remarkable genome conservation: these species share a high proportion of conserved chromosomes, and differences are due to 10 Robertsonian (Rb) rearrangements (3 autapomorphies, 3 synapomorphies and 4 hemiplasies/homoplasies). Our data suggest that chromosome evolution in Desmodillus occurred at a rate of ~1.25 rearrangements per million years (Myr), and that the rate among Gerbilliscus over a time period spanning 8 Myr is also ~1.25 rearrangements/Myr. The recently diverged Gerbillurus (G. tytonis and G. paeba) share an identical karyotype, while Gerbilliscus kempi, G. afra and G. leucogaster differ by 6 Rb rearrangements (a rate of ~1 rearrangement/Myr). Thus, our data suggests a very slow rate of chromosomal evolution in Southern African gerbils. PMID:23652816

  8. Wheat chromosomes sorting: dividing a komplex genome into sub-genomic specific BAC libraries

    Czech Academy of Sciences Publication Activity Database

    Lucretti, S.; Doležel, Jaroslav

    2005. P. 2.11. [Italian Society of Agricultural Genetics Annual Congress . 12.09.2005-15.09.2005, Potenza] Keywords : Wheat * flow-sorted chromosomes * BAC library Subject RIV: EB - Genetics ; Molecular Biology

  9. Flow kaiyotyping and chromosome sorting in bread wheat (Triticum aestivum L)

    Czech Academy of Sciences Publication Activity Database

    Doleželová, Marie; Vrána, Jan; Čihalíková, Jarmila; Šimková, Hana; Doležel, Jaroslav

    2002-01-01

    Roč. 104, - (2002), s. 1362-1372. ISSN 0040-5752 R&D Projects: GA AV ČR IAA6038204; GA AV ČR IBS5038104 Institutional research plan: CEZ:AV0Z5038910 Keywords : Chromosome isolation * Chromosome sorting * Flow cytometry Subject RIV: EB - Genetics ; Molecular Biology Impact factor: 2.264, year: 2002

  10. Multiple displacement amplification of the DNA from single flow–sorted plant chromosome

    OpenAIRE

    Cápal, P. (Petr); Blavet, N; Vrána, J; Kubaláková, M; Doležel, J. (Jaroslav)

    2015-01-01

    A protocol is described for production of micrograms of DNA from single copies of flow-sorted plant chromosomes. Of 183 single copies of wheat chromosome 3B, 118 (64%) were successfully amplified. Sequencing DNA amplification products using an Illumina HiSeq 2000 system to 10× coverage and merging sequences from three separate amplifications resulted in 60% coverage of the chromosome 3B reference, entirely covering 30% of its genes. The merged sequences permitted de novo assembly of 19% of ch...

  11. Flow sorting of the Y sex chromosome in the dioecious plant Melandrium album

    Energy Technology Data Exchange (ETDEWEB)

    Veuskens, J.; Jacobs, M.; Negrutiu, I. [Free Univ. of Brussels (Belgium)] [and others

    1995-12-01

    The preparation of stable chromosome suspensions and flow cytometric sorting of both the Y sex chromosome of the white campion, Melandrium album, and the deleted Y chromosome of an asexual mutant, 5K63, is described. The principle has been to maintain transformed roots in vitro, synchronize and block mitosis, reduce cells to protoplasts, and lyse these to release chromosomes. Such in vitro material, unlike many cell suspensions, showed a stable karyotype. Factors critical to producing high-quality chromosome suspensions from protoplasts include osmolality of isolation solutions and choice of spindle toxin and of lysis buffer. Agrobacterium rhizogenes transformed young growing root cultures were synchronized at G1/S with 50 {mu}M aphidicolin for 24 h and released to a mitotic block with 30 {mu}M oryzalin for 11 h. Protoplast preparations from such tissue routinely had metaphase indices reaching 15%. Suspensions of intact metaphase chromosomes, with few chromatids, were obtained by lysing swollen mitotic protoplasts in a citric acid/disodium phosphate buffer. Except for the presence of clumps of autosomal chromosomes near the X and Y chromosome zones, monoparametric histograms of fluorescence intensities of suspensions stained with 4{prime},6-diamidino-2-phenylindole showed profiles similar to theoretical flow karyotypes. Two types of Y chromosomes, one full-length and one partially deleted (from the asexual mutant), could be sorted at 90% purity (21-fold enrichment of Y). These results are discussed in the context of sex determination and differentiation in higher plants. 45 refs., 6 figs., 2 tabs.

  12. Homoploid hybrid speciation and genome evolution via chromosome sorting.

    Science.gov (United States)

    Lukhtanov, Vladimir A; Shapoval, Nazar A; Anokhin, Boris A; Saifitdinova, Alsu F; Kuznetsova, Valentina G

    2015-05-22

    Genomes of numerous diploid plant and animal species possess traces of interspecific crosses, and many researches consider them as support for homoploid hybrid speciation (HHS), a process by which a new reproductively isolated species arises through hybridization and combination of parts of the parental genomes, but without an increase in ploidy. However, convincing evidence for a creative role of hybridization in the origin of reproductive isolation between hybrid and parental forms is extremely limited. Here, through studying Agrodiaetus butterflies, we provide proof of a previously unknown mode of HHS based on the formation of post-zygotic reproductive isolation via hybridization of chromosomally divergent parental species and subsequent fixation of a novel combination of chromosome fusions/fissions in hybrid descendants. We show that meiotic segregation, operating in the hybrid lineage, resulted in the formation of a new diploid genome, drastically rearranged in terms of chromosome number. We also demonstrate that during the heterozygous stage of the hybrid species formation, recombination was limited between rearranged chromosomes of different parental origin, representing evidence that the reproductive isolation was a direct consequence of hybridization. PMID:25925097

  13. Homoploid hybrid speciation and genome evolution via chromosome sorting

    Science.gov (United States)

    Lukhtanov, Vladimir A.; Shapoval, Nazar A.; Anokhin, Boris A.; Saifitdinova, Alsu F.; Kuznetsova, Valentina G.

    2015-01-01

    Genomes of numerous diploid plant and animal species possess traces of interspecific crosses, and many researches consider them as support for homoploid hybrid speciation (HHS), a process by which a new reproductively isolated species arises through hybridization and combination of parts of the parental genomes, but without an increase in ploidy. However, convincing evidence for a creative role of hybridization in the origin of reproductive isolation between hybrid and parental forms is extremely limited. Here, through studying Agrodiaetus butterflies, we provide proof of a previously unknown mode of HHS based on the formation of post-zygotic reproductive isolation via hybridization of chromosomally divergent parental species and subsequent fixation of a novel combination of chromosome fusions/fissions in hybrid descendants. We show that meiotic segregation, operating in the hybrid lineage, resulted in the formation of a new diploid genome, drastically rearranged in terms of chromosome number. We also demonstrate that during the heterozygous stage of the hybrid species formation, recombination was limited between rearranged chromosomes of different parental origin, representing evidence that the reproductive isolation was a direct consequence of hybridization. PMID:25925097

  14. Chromosome sorting and its applications in common wheat (Triticum aestivum) genome sequencing

    Czech Academy of Sciences Publication Activity Database

    Wu, S.W.; Xiao, Y.; Zheng, X.; Cai, Y.F.; Doležel, Jaroslav; Liu, B.H.; Yang, L.; Song, M.F.; Zhou, P.; Zhou, Y.; Meng, F.H.; Wang, S.H.; Liu, H.W.; Zhai, H.Q.; Yang, J.P.

    2010-01-01

    Roč. 55, č. 15 (2010), s. 1463-1468. ISSN 1001-6538 Institutional research plan: CEZ:AV0Z50380511 Keywords : Triticum aestivum * flow cytogenetics * chromosome sorting Subject RIV: EB - Genetics ; Molecular Biology Impact factor: 1.087, year: 2010

  15. INCIDENCE OF CHROMOSOME ABERRATIONS IN MAMMALIAN SPERM STAINED WITH HOECHST 33342 AND UV-LASER IRRADIATED DURING FLOW SORTING

    Science.gov (United States)

    The separation of two sperm populations is possible using the technique of flow sorting, provided that a significant difference exists in the DNA content of X- and Y-bearing sperm. In order to ascertain whether or not chromosome damage was induced in sorted sperm, chromosome prep...

  16. Tracking Chromosome Evolution in Southern African Gerbils Using Flow-Sorted Chromosome Paints

    OpenAIRE

    Knight, L.I.; Ng, B. L.; Cheng, W; Fu, B.; Yang, F.; Rambau, R V

    2013-01-01

    Desmodillus and Gerbilliscus (formerly Tatera) comprise a monophyletic group of gerbils (subfamily Gerbillinae) which last shared an ancestor approximately 8 million years ago; diploid chromosome number variation among the species ranges from 2n = 36 to 2n = 50. In an attempt to shed more light on chromosome evolution and speciation in these rodents, we compared the karyotypes of 7 species, representing 3 genera, based on homology data revealed by chromosome painting with probes derived from ...

  17. Dissection of the nuclear genome of barley by chromosome flow sorting

    Czech Academy of Sciences Publication Activity Database

    Suchánková, Pavla; Kubaláková, Marie; Kovářová, Pavlína; Bartoš, Jan; Čihalíková, Jarmila; Molnár-Láng, M.; Endo, T. R.; Doležel, Jaroslav

    2006-01-01

    Roč. 113, - (2006), s. 651-659. ISSN 0040-5752 R&D Projects: GA ČR GD521/05/H013; GA MŠk(CZ) LC06004; GA MŠk ME 884 Institutional research plan: CEZ:AV0Z50380511 Keywords : Flow-sorted chromosomes * barley * FISH Subject RIV: EB - Genetics ; Molecular Biology Impact factor: 2.715, year: 2006

  18. An Improved Consensus Linkage Map of Barley Based on Flow-Sorted Chromosomes and Single Nucleotide Polymorphism Markers

    Czech Academy of Sciences Publication Activity Database

    Munoz-Amatriain, M.; Moscou, M. J.; Bhat, P. R.; Bartoš, Jan; Suchánková, Pavla; Šimková, Hana; Endo, T. R.; Fenton, R. D.; Lonardi, S.; Castillo, A. M.; Doležel, Jaroslav; Close, T. J.

    2011-01-01

    Roč. 4, č. 3 (2011), s. 238-249. ISSN 1940-3372 R&D Projects: GA MŠk(CZ) LC06004; GA MŠk ED0007/01/01 Institutional research plan: CEZ:AV0Z50380511 Keywords : Chromosomes sorting * Barley * Nucleotide polymorphism Subject RIV: EB - Genetics ; Molecular Biology

  19. Integration of genetic and physical maps of the chickpea (Cicer arietinum L.) genome using flow-sorted chromosomes

    Czech Academy of Sciences Publication Activity Database

    Zatloukalová, Pavlína; Hřibová, Eva; Kubaláková, Marie; Suchánková, Pavla; Šimková, Hana; Adoración, C.; Kahl, G.; Millán, T.; Doležel, Jaroslav

    2011-01-01

    Roč. 19, č. 6 (2011), s. 729-739. ISSN 0967-3849 R&D Projects: GA MŠk(CZ) LC06004 Institutional research plan: CEZ:AV0Z50380511 Keywords : BAC-FISH * Chromosome isolation * Flow cytometric sorting Subject RIV: EB - Genetics ; Molecular Biology Impact factor: 3.087, year: 2011

  20. Next-generation sequencing and syntenic integration of flow-sorted arms of wheat chromosome 4A exposes the chromosome structure and gene content

    Czech Academy of Sciences Publication Activity Database

    Hernandez, P.; Martis, M.; Dorado, G.; Pfeifer, M.; Galvez, S.; Schaaf, S.; Jouve, N.; Šimková, Hana; Valárik, Miroslav; Doležel, Jaroslav; Mayer, K. F. X.

    2012-01-01

    Roč. 69, č. 3 (2012), s. 377-386. ISSN 0960-7412 R&D Projects: GA ČR GA521/08/1629; GA ČR GAP501/10/1740 Grant ostatní: GA MŠk(CZ) ED0007/01/01 Institutional research plan: CEZ:AV0Z50380511 Keywords : wheat genome * chromosome sorting * genome zipper Subject RIV: EB - Genetics ; Molecular Biology Impact factor: 6.582, year: 2012

  1. Dissecting large and complex genomes: flow sorting and BAC cloning of individual chromosomes from bread wheat

    Czech Academy of Sciences Publication Activity Database

    Šafář, Jan; Bartoš, Jan; Janda, Jaroslav; Bellec, A.; Kubaláková, Marie; Valárik, Miroslav; Pateyron, S.; Weiserová, Jitka; Tušková, Radka; Čihalíková, Jarmila; Vrána, Jan; Šimková, Hana; Faivre-Rampant, P.; Sourdille, P.; Caboche, M.; Bernard, M.; Doležel, Jaroslav; Chalhoub, B.

    2004-01-01

    Roč. 39, - (2004), s. 960-968. ISSN 0960-7412 R&D Projects: GA ČR GA522/03/0354; GA ČR GA521/04/0607; GA MZe QC1336 Institutional research plan: CEZ:AV0Z5038910 Keywords : wheat * flow sorting * DNA library Subject RIV: EB - Genetics ; Molecular Biology Impact factor: 6.367, year: 2004

  2. Rapid Identification and Determination of Purity of Flow-Sorted Plant Chromosomes Using C-PRINS

    Czech Academy of Sciences Publication Activity Database

    Doleželová, Marie; Lysák, Martin; Vrána, Jan; Šimková, Hana; Čihalíková, Jarmila; Doležel, Jaroslav

    2000-01-01

    Roč. 41, - (2000), s. 102-108. ISSN 0196-4763 R&D Projects: GA ČR GV521/96/K117 Institutional research plan: CEZ:AV0Z5038910 Keywords : Plant Chromosomes * Identification * C-PRINS Subject RIV: EB - Genetics ; Molecular Biology Impact factor: 2.557, year: 2000

  3. Flow Sorting of Mitotic Chromosomes in Common Wheat (Triticum aestivum L.)

    Czech Academy of Sciences Publication Activity Database

    Vrána, Jan; Doleželová, Marie; Šimková, Hana; Čihalíková, Jarmila; Lysák, Martin; Doležel, Jaroslav

    2000-01-01

    Roč. 156, - (2000), s. 2033-2041. ISSN 0016-6731 R&D Projects: GA ČR GV521/96/K117; GA MŠk ME 376 Institutional research plan: CEZ:AV0Z5038910 Keywords : Mitotic Chromosomes * Triticum aestivum L. Subject RIV: EB - Genetics ; Molecular Biology Impact factor: 4.687, year: 2000

  4. Multiple displacement amplification of the DNA from single flow–sorted plant chromosome

    Czech Academy of Sciences Publication Activity Database

    Cápal, Petr; Blavet, Nicolas; Vrána, Jan; Kubaláková, Marie; Doležel, Jaroslav

    2015-01-01

    Roč. 84, č. 4 (2015), s. 838-844. ISSN 0960-7412 R&D Projects: GA ČR GBP501/12/G090; GA MŠk(CZ) LO1204 Institutional support: RVO:61389030 Keywords : whole-genome amplification * single-chromosome genomics * next-generation sequencing Subject RIV: EB - Genetics ; Molecular Biology Impact factor: 5.972, year: 2014

  5. Multiple displacement amplification of the DNA from single flow–sorted plant chromosome

    Czech Academy of Sciences Publication Activity Database

    Cápal, Petr; Blavet, Nicolas; Vrána, Jan; Kubaláková, Marie; Doležel, Jaroslav

    2015-01-01

    Roč. 84, č. 4 (2015), s. 838-844. ISSN 0960-7412 R&D Projects: GA ČR GBP501/12/G090; GA MŠk(CZ) LO1204 Institutional support: RVO:61389030 Keywords : whole- genome amplification * single-chromosome genomics * next-generation sequencing Subject RIV: EB - Genetics ; Molecular Biology Impact factor: 5.972, year: 2014

  6. Next-generation sequencing of flow-sorted wheat chromosome 5D reveals lineage-specific translocations and widespread gene duplications

    Czech Academy of Sciences Publication Activity Database

    Lucas, S. J.; Akpinar, B. A.; Šimková, Hana; Kubaláková, Marie; Doležel, Jaroslav; Budak, H.

    2014-01-01

    Roč. 15, DEC 9 2014 (2014). ISSN 1471-2164 R&D Projects: GA ČR GBP501/12/G090 Institutional support: RVO:61389030 Keywords : Wheat genome * Chromosome sorting * Triticum aestivum Subject RIV: EB - Genetics ; Molecular Biology Impact factor: 3.986, year: 2014

  7. Construction of a DNA library representing 15q11-13 by subtraction of two flow sorted marker chromosome-specific libraries

    Energy Technology Data Exchange (ETDEWEB)

    Blennow, E.; Werelius, B.; Nordenskjoeld, M. [Karolinska Hospital, Stockholm (Sweden)] [and others

    1994-09-01

    Constitutional extra {open_quotes}marker chromosomes{close_quotes} are found in {approx}0.5/1000 of newborns. Of these, 50% are inverted duplications of the pericentromeric region of chromosome 15, including two variants; (1) inv dup(15)(pter{yields}q11:q11{yields}pter) and (2) inv dup(15) (pter{yields}q12-13::q12-13{yields}pter). Variant (1) is found in phenotypically normal individuals, whereas variant (2) will produce a typical clinical picture including mental retardation, autism, hyperactivity and discrete dysmorphic features. Fluorescence in situ hybridization (FISH) using single copy probes from the Prader-Willi region confirms these observations as well as chromosome painting using a flow-sorted marker chromosome-specific library from a variant (1) marker, hybridized to the chromosomes of a patient with a variant (2) marker chromosome. Followingly, a flow-sorted biotinylated variant (1) library was subtracted from a non-labeled variant (2) library using magnetic beads and subsequent amplification by degenerate oligonucleotide-primed PCR (DOP-PCR). The successful result was demonstrated by using the amplified material for chromosome painting on chromosome slides from variant (1) and variant (2) patients. We have constructed a library from 15q11-13. This region contains genes producing a specific abnormal phenotype when found in a tri- or tetrasomic state. The region also contains the genes responsible for the Prader-Willi and Angelman syndromes when the paternal/maternal copy is missing, respectively. It is therefore a region where parental imprinting plays an important role. The isolated library may be used to isolate single copy clones which will allow further investigations of this region.

  8. Sorting Out Sorts

    OpenAIRE

    Jonathan B. Berk

    1998-01-01

    In this paper we analyze the theoretical implications of sorting data into groups and then running asset pricing tests within each group. We show that the way this procedure is implemented introduces a severe bias in favor of rejecting the model under consideration. By simply picking enough groups to sort into even the true asset pricing model can be shown to have no explanatory power within each group.

  9. Chromosome Isolation by Flow Sorting in Aegilops umbellulata and Ae. comosa and Their Allotetraploid Hybrids Ae. biuncialis and Ae. geniculata

    Czech Academy of Sciences Publication Activity Database

    Molnár, I.; Kubaláková, Marie; Šimková, Hana; Cseh, A.; Molnár-Láng, M.; Doležel, Jaroslav

    2011-01-01

    Roč. 66, č. 11 (2011), s. 1-11. E-ISSN 1932-6203 R&D Projects: GA MŠk(CZ) LC06004; GA MŠk OC08025 Grant ostatní: European Regional Development Fund CZ.1.05/2.1.00/ 01.0007 Institutional research plan: CEZ:AV0Z50380511 Keywords : wheat * chromosome isolation * Aegilops umbellulata Subject RIV: EB - Genetics ; Molecular Biology Impact factor: 4.092, year: 2011

  10. Derivation of sorting programs

    Science.gov (United States)

    Varghese, Joseph; Loganantharaj, Rasiah

    1990-01-01

    Program synthesis for critical applications has become a viable alternative to program verification. Nested resolution and its extension are used to synthesize a set of sorting programs from their first order logic specifications. A set of sorting programs, such as, naive sort, merge sort, and insertion sort, were successfully synthesized starting from the same set of specifications.

  11. k -Bitonic sort

    Institute of Scientific and Technical Information of China (English)

    高庆狮; 胡玥; 刘志勇

    1999-01-01

    A k-bitonic sort which generalizes the bitonic sort is proposed. The theorem of the bitonic sort, which merges two monotonic sequences into one order sequence, is extended into the theorem of k-bitonic sort. The k-bitonic sort merges K (=2k or 2k-1) monotonic sequences into one order sequence in steps, where k=[K/2] is an integer and k≥1. The k-bitonic sort is the Batcher’s bitonic sort when k=1.

  12. Avi Sorting Network

    OpenAIRE

    Avinash Bansal; Kamal Gupta

    2012-01-01

    Sorting network is an abstract mathematical modelwhich can be used as a multiple-input, multiple-output switchingnetwork to sort the data in ascending or descending order [1].Sorting has been one of the most critical applications on parallelcomputing machines. Many classic textbooks on algorithms likeThomas H. Cormen, therefore consider this problem in greatdetail and list many sorting network for this purpose [2]. Thereare many sorting algorithms as the Bubble / Insertion sorter,Odd-Even sor...

  13. Chromosome flow sorting and physical mapping

    Czech Academy of Sciences Publication Activity Database

    Doležel, Jaroslav; Kubaláková, Marie; Bartoš, Jan; Macas, Jiří

    Weinheim : Wiley-VCH Verlag GmbH & Co. KGaA, 2005 - (Meksem, K., Kahl, G.), s. 151-171 ISBN 3-527-31116-5 R&D Projects: GA ČR GA521/03/0595; GA ČR GA522/03/0354; GA MZe QC1336; GA MŠk ME 527; GA MŠk ME 528 Institutional research plan: CEZ:AV0Z50380511 Keywords : Flow cytogenetics * genome mapping Subject RIV: EB - Genetics ; Molecular Biology

  14. Avi Sorting Network

    Directory of Open Access Journals (Sweden)

    Avinash Bansal

    2012-09-01

    Full Text Available Sorting network is an abstract mathematical modelwhich can be used as a multiple-input, multiple-output switchingnetwork to sort the data in ascending or descending order [1].Sorting has been one of the most critical applications on parallelcomputing machines. Many classic textbooks on algorithms likeThomas H. Cormen, therefore consider this problem in greatdetail and list many sorting network for this purpose [2]. Thereare many sorting algorithms as the Bubble / Insertion sorter,Odd-Even sorter, Sort the data in O(log2 n2 time complexity andsome other sorter have O(n2 as time complexity, where n is thenumber of elements. In this paper we propose a sorting networkcalled “Avi S orter” having time complexity O(n log2 n which isbased on just similar to bubble sort algorithm. This sortingnetwork provides the easy way to understand and manipulate theconcept of sorting network.

  15. What is a Sorting Function?

    DEFF Research Database (Denmark)

    Henglein, Fritz

    2009-01-01

    What is a sorting function—not a sorting function for a given ordering relation, but a sorting function with nothing given? Formulating four basic properties of sorting algorithms as defining requirements, we arrive at intrinsic notions of sorting and stable sorting: A function is a sorting funct...

  16. Roterende sorte huller

    DEFF Research Database (Denmark)

    Jerslev, Kristian

    Sorte huller har normalt været anset som statiske, mens alle andre legemer i Universet roterer. Dette stemmer imidlertid ikke overens med den nylige opdagelse af et roterende sort hul i midten af galaksen NGC 1365. Hvilken effekt har rotationen af et sort hul på legemer i dets nærhed, og hvordan...... kan astronomer i det hele taget måle, at sorte huller roterer?...

  17. Sorting Algorithms with Restrictions

    CERN Document Server

    Aslanyan, Hakob

    2011-01-01

    Sorting is one of the most used and well investigated algorithmic problem [1]. Traditional postulation supposes the sorting data archived, and the elementary operation as comparisons of two numbers. In a view of appearance of new processors and applied problems with data streams, sorting changed its face. This changes and generalizations are the subject of investigation in the research below.

  18. Sorting a distribution theory

    CERN Document Server

    Mahmoud, Hosam M

    2011-01-01

    A cutting-edge look at the emerging distributional theory of sorting Research on distributions associated with sorting algorithms has grown dramatically over the last few decades, spawning many exact and limiting distributions of complexity measures for many sorting algorithms. Yet much of this information has been scattered in disparate and highly specialized sources throughout the literature. In Sorting: A Distribution Theory, leading authority Hosam Mahmoud compiles, consolidates, and clarifies the large volume of available research, providing a much-needed, comprehensive treatment of the

  19. Fuel sorting evaluation

    International Nuclear Information System (INIS)

    An evaluation of functions and requirements associated with sorting fuel from the Hanford K Basins is presented to support design issue resolution decisions for achieving interim fuel storage. Potential requirements are recommended for implementation in design activities. The recommendations are provided as input to a management decision process where decisions are finalized and the sorting issue is closed

  20. Three Sorts of Naturalism

    DEFF Research Database (Denmark)

    Fink, Hans

    2006-01-01

    In "Two sorts of Naturalism" John McDowell is sketching his own sort of naturalism in ethics as an alternative to "bald naturalism". In this paper I distinguish materialist, idealist and absolute conceptions of nature and of naturalism in order to provide a framework for a clearer understanding o...

  1. Sorting to Extremes

    Science.gov (United States)

    Baum, Sandy; McPherson, Michael S.

    2011-01-01

    The world of higher education is a world of sorting, selecting, and ranking--on both sides of the market. Colleges select students to recruit and then to admit; students choose where to apply and which offer to accept. The sorting process that gets the most attention is in the higher reaches of the market, where it is not too much to say that…

  2. Layers in sorting practices: Sorting out patients with potential cancer

    DEFF Research Database (Denmark)

    Møller, Naja Holten; Bjørn, Pernille

    2011-01-01

    sorting mechanism, but is handled by informal sorting mechanisms. We identify two informal sorting mechanisms with large impact on the sorting practices, namely subtle categorizing and collective remembering. These informal sorting mechanisms have implications for the design of electronic booking systems...

  3. Wage Sorting Trends

    DEFF Research Database (Denmark)

    Bagger, Jesper; Vejlin, Rune Majlund; Sørensen, Kenneth Lykke

    Using a population-wide Danish Matched Employer-Employee panel from 1980-2006, we document a strong trend towards more positive assortative wage sorting. The correlation between worker and firm fixed effects estimated from a log wage regression increases from -0.07 in 1981 to .14 in 2001. The...... nonstationary wage sorting pattern is not due to compositional changes in the labor market, primarily occurs among high wage workers, and comprises 41 percent of the increase in the standard deviation of log real wages between 1980 and 2006. We show that the wage sorting trend is associated with worker...

  4. Sorting Out Seasonal Allergies

    Science.gov (United States)

    ... Close ‹ Back to Health Library Sorting Out Seasonal Allergies Sneezing, runny nose, nasal congestion. Symptoms of the ... How do I know if I have seasonal allergies? According to Dr. Georgeson, the best way to ...

  5. Chromosomal rearrangements in cattle and pigs revealed by chromosome microdissection and chromosome painting

    Directory of Open Access Journals (Sweden)

    Yerle Martine

    2003-11-01

    Full Text Available Abstract A pericentric inversion of chromosome 4 in a boar, as well as a case of (2q-;5p+ translocation mosaicism in a bull were analysed by chromosome painting using probes generated by conventional microdissection. For the porcine inversion, probes specific for p arms and q arms were produced and hybridised simultaneously on metaphases of a heterozygote carrier. In the case of the bovine translocation, two whole chromosome probes (chromosome 5, and derived chromosome 5 were elaborated and hybridised independently on chromosomal preparations of the bull who was a carrier of the mosaic translocation. The impossibility of differentiating chromosomes 2 and der(2 from other chromosomes of the metaphases did not allow the production of painting probes for these chromosomes. For all experiments, the quality of painting was comparable to that usually observed with probes obtained from flow-sorted chromosomes. The results obtained allowed confirmation of the interpretations proposed with G-banding karyotype analyses. In the bovine case, however, the reciprocity of the translocation could not be proven. The results presented in this paper show the usefulness of the microdissection technique for characterising chromosomal rearrangements in species for which commercial probes are not available. They also confirmed that the main limiting factor of the technique is the quality of the chromosomal preparations, which does not allow the identification of target chromosomes or chromosome fragments in all cases.

  6. Ready, steady, SORT!

    CERN Multimedia

    Laëtitia Pedroso

    2010-01-01

    The selective or ecological sorting of waste is already second nature to many of us and concerns us all. As the GS Department's new awareness-raising campaign reminds us, everything we do to sort waste contributes to preserving the environment.    Placemats printed on recycled paper using vegetable-based ink will soon be distributed in Restaurant No.1.   Environmental protection is never far from the headlines, and CERN has a responsibility to ensure that the 3000 tonnes and more of waste it produces every year are correctly and selectively sorted. Materials can be given a second life through recycling and re-use, thereby avoiding pollution from landfill sites and incineration plants and saving on processing costs. The GS Department is launching a new poster campaign designed to raise awareness of the importance of waste sorting and recycling. "After conducting a survey to find out whether members of the personnel were prepared to make an effort to sort a...

  7. Microfluidic sorting of microtissues.

    Science.gov (United States)

    Buschke, D G; Resto, P; Schumacher, N; Cox, B; Tallavajhula, A; Vivekanandan, A; Eliceiri, K W; Williams, J C; Ogle, B M

    2012-03-01

    Increasingly, invitro culture of adherent cell types utilizes three-dimensional (3D) scaffolds or aggregate culture strategies to mimic tissue-like, microenvironmental conditions. In parallel, new flow cytometry-based technologies are emerging to accurately analyze the composition and function of these microtissues (i.e., large particles) in a non-invasive and high-throughput way. Lacking, however, is an accessible platform that can be used to effectively sort or purify large particles based on analysis parameters. Here we describe a microfluidic-based, electromechanical approach to sort large particles. Specifically, sheath-less asymmetric curving channels were employed to separate and hydrodynamically focus particles to be analyzed and subsequently sorted. This design was developed and characterized based on wall shear stress, tortuosity of the flow path, vorticity of the fluid in the channel, sorting efficiency and enrichment ratio. The large particle sorting device was capable of purifying fluorescently labelled embryoid bodies (EBs) from unlabelled EBs with an efficiency of 87.3% ± 13.5%, and enrichment ratio of 12.2 ± 8.4 (n = 8), while preserving cell viability, differentiation potential, and long-term function. PMID:22505992

  8. Sorting Plastic Waste in Hydrocyclone

    Directory of Open Access Journals (Sweden)

    Ernestas Šutinys

    2011-02-01

    Full Text Available The article presents material about sorting plastic waste in hydrocyclone. The tests on sorting plastic waste were carried out. Also, the findings received from the performed experiment on the technology of sorting plastic waste are interpreted applying an experimental model of the equipment used for sorting plastics of different density.Article in Lithuanian

  9. Sorting and sustaining cooperation

    DEFF Research Database (Denmark)

    Vikander, Nick

    2013-01-01

    This paper looks at cooperation in teams where some people are selfish and others are conditional cooperators, and where lay-offs will occur at a fixed future date. I show that the best way to sustain cooperation prior to the lay-offs is often in a sorting equilibrium, where conditional cooperators...

  10. Sorting quantum systems efficiently

    Science.gov (United States)

    Ionicioiu, Radu

    2016-01-01

    Measuring the state of a quantum system is a fundamental process in quantum mechanics and plays an essential role in quantum information and quantum technologies. One method to measure a quantum observable is to sort the system in different spatial modes according to the measured value, followed by single-particle detectors on each mode. Examples of quantum sorters are polarizing beam-splitters (PBS) – which direct photons according to their polarization – and Stern-Gerlach devices. Here we propose a general scheme to sort a quantum system according to the value of any d-dimensional degree of freedom, such as spin, orbital angular momentum (OAM), wavelength etc. Our scheme is universal, works at the single-particle level and has a theoretical efficiency of 100%. As an application we design an efficient OAM sorter consisting of a single multi-path interferometer which is suitable for a photonic chip implementation. PMID:27142705

  11. Gold ore sorting

    International Nuclear Information System (INIS)

    Apparatus for sorting lumps of gold-bearing ore according to their gold content is described. It includes means for irradiating the lumps of ore with neutrons, e.g. a neutron tube adapted to produce at least 1010 neutrons per second with an energy of less than 4.5 MeV. The resulting intensity of 297 keV gamma rays arising from the nuclear reaction 197Au(n,n'#betta#) 197Au is measured. The measured gamma ray intensity from a given lump of ore is used to sort that lump of ore from other lumps. The apparatus includes various cylinders and a vibrator for presenting the lumps of ore to the neutrons in a geometrical configuration such as to enable the lumps to be irradiated uniformly. (author)

  12. Lipoprotein sorting in bacteria.

    Science.gov (United States)

    Okuda, Suguru; Tokuda, Hajime

    2011-01-01

    Bacterial lipoproteins are synthesized as precursors in the cytoplasm and processed into mature forms on the cytoplasmic membrane. A lipid moiety attached to the N terminus anchors these proteins to the membrane surface. Many bacteria are predicted to express more than 100 lipoproteins, which play diverse functions on the cell surface. The Lol system, composed of five proteins, catalyzes the localization of Escherichia coli lipoproteins to the outer membrane. Some lipoproteins play vital roles in the sorting of other lipoproteins, lipopolysaccharides, and β-barrel proteins to the outer membrane. On the basis of results from biochemical, genetic, and structural studies, we discuss the biogenesis of lipoproteins in bacteria, their importance in cellular functions, and the molecular mechanisms underlying efficient sorting of hydrophobic lipoproteins to the outer membrane through the hydrophilic periplasm. PMID:21663440

  13. Sorting quantum systems efficiently.

    Science.gov (United States)

    Ionicioiu, Radu

    2016-01-01

    Measuring the state of a quantum system is a fundamental process in quantum mechanics and plays an essential role in quantum information and quantum technologies. One method to measure a quantum observable is to sort the system in different spatial modes according to the measured value, followed by single-particle detectors on each mode. Examples of quantum sorters are polarizing beam-splitters (PBS) - which direct photons according to their polarization - and Stern-Gerlach devices. Here we propose a general scheme to sort a quantum system according to the value of any d-dimensional degree of freedom, such as spin, orbital angular momentum (OAM), wavelength etc. Our scheme is universal, works at the single-particle level and has a theoretical efficiency of 100%. As an application we design an efficient OAM sorter consisting of a single multi-path interferometer which is suitable for a photonic chip implementation. PMID:27142705

  14. Heideggers sorte arv

    DEFF Research Database (Denmark)

    Olesen, Søren Gosvig

    2015-01-01

    Martin Heidegger var antisemit, men er hans tænkning og intellektuelle arv det også? Søren Gosvig Olesen opsøger den store tyske tænkers arvinger og bindene fra 1938-48 i Heideggers efterladte ’Sorte hæfter’, hvor den lille mands meninger blander sig med en stor tænkers tanker......Martin Heidegger var antisemit, men er hans tænkning og intellektuelle arv det også? Søren Gosvig Olesen opsøger den store tyske tænkers arvinger og bindene fra 1938-48 i Heideggers efterladte ’Sorte hæfter’, hvor den lille mands meninger blander sig med en stor tænkers tanker...

  15. Event shape sorting

    Science.gov (United States)

    Kopečná, Renata; Tomášik, Boris

    2016-04-01

    We propose a novel method for sorting events of multiparticle production according to the azimuthal anisotropy of their momentum distribution. Although the method is quite general, we advocate its use in analysis of ultra-relativistic heavy-ion collisions where a large number of hadrons is produced. The advantage of our method is that it can automatically sort out samples of events with histograms that indicate similar distributions of hadrons. It takes into account the whole measured histograms with all orders of anisotropy instead of a specific observable ( e.g., v_2 , v_3 , q_2 . It can be used for more exclusive experimental studies of flow anisotropies which are then more easily compared to theoretical calculations. It may also be useful in the construction of mixed-events background for correlation studies as it allows to select events with similar momentum distribution.

  16. Chip-based droplet sorting

    Energy Technology Data Exchange (ETDEWEB)

    Beer, Neil Reginald; Lee, Abraham; Hatch, Andrew

    2014-07-01

    A non-contact system for sorting monodisperse water-in-oil emulsion droplets in a microfluidic device based on the droplet's contents and their interaction with an applied electromagnetic field or by identification and sorting.

  17. Chip-based droplet sorting

    Science.gov (United States)

    Beer, Neil Reginald; Lee, Abraham; Hatch, Andrew

    2014-07-01

    A non-contact system for sorting monodisperse water-in-oil emulsion droplets in a microfluidic device based on the droplet's contents and their interaction with an applied electromagnetic field or by identification and sorting.

  18. Teaching Sorting in ICT

    OpenAIRE

    Szlávi, Péter; Törley, Gábor

    2009-01-01

    This article is aimed at considering how an algorithmic problem - more precisely a sorting problem - can be used in an informatics class in primary and secondary education to make students mobilize the largest possible amount of their intellectual skills in the problem solving process. We will be outlining a method which essentially forces students to utilize their mathematical knowledge besides algorithmization in order to provide an efficient solution. What is more, they are expected to ...

  19. Sorting out Ideas about Function

    Science.gov (United States)

    Hillen, Amy F.; Malik, LuAnn

    2013-01-01

    Card sorting has the potential to provide opportunities for exploration of a variety of topics and levels. In a card-sorting task, each participant is presented with a set of cards--each of which depicts a relationship--and is asked to sort the cards into categories that make sense to him or her. The concept of function is critical to…

  20. Pair Wise Sorting: A New Way of Sorting

    Directory of Open Access Journals (Sweden)

    Md. Jahangir Alam

    2010-12-01

    Full Text Available This paper presents a technique for sorting numerical data in an efficient way. The numbers of comparisons i.e. the running time of this technique is dependent on distribution or diversity of the value of data items as like as other efficient algorithms. When the total number of data is even, this method groups that data into a collection of pairs and therefore establishes the sorting constraints on each of the pairs. The control is traversed through the list of elements by changing the position of each pair which is the major principle of this technique. On the other hand, when the total number of elements is odd, this method sorts all elements except the last one in the same was as mentioned earlier and the last element is sorted using the general Insertion Sort. This algorithm is therefore a hybrid sorting method that sorts elementary numeric data in a faster and efficient manner.

  1. Fluorescence activated cell sorting.

    Science.gov (United States)

    Bonner, W. A.; Hulett, H. R.; Sweet, R. G.; Herzenberg, L. A.

    1972-01-01

    An instrument has been developed for sorting biological cells. The cells are rendered differentially fluorescent and incorporated into a small liquid stream illuminated by a laser beam. The cells pass sequentially through the beam, and fluorescent light from the cells gives rise to electrical signals. The stream is broken into a series of uniform size drops downstream of the laser. The cell signals are used to give appropriate electrostatic charges to drops containing the cells. The drops then pass between two charged plates and are deflected to appropriate containers. The system has proved capable of providing fractions containing large numbers of viable cells highly enriched in a particular functional type.

  2. Selective sorting of waste

    CERN Multimedia

    2007-01-01

    Not much effort needed, just willpower In order to keep the cost of disposing of waste materials as low as possible, CERN provides two types of recipient at the entrance to each building: a green plastic one for paper/cardboard and a metal one for general refuse. For some time now we have noticed, to our great regret, a growing negligence as far as selective sorting is concerned, with, for example, the green recipients being filled with a mixture of cardboard boxes full of polystyrene or protective wrappers, plastic bottles, empty yogurts pots, etc. …We have been able to ascertain, after careful checking, that this haphazard mixing of waste cannot be attributed to the cleaning staff but rather to members of the personnel who unscrupulously throw away their rubbish in a completely random manner. Non-sorted waste entails heavy costs for CERN. For information, once a non-compliant item is found in a green recipient, the entire contents are sent off for incineration rather than recycling… We are all concerned...

  3. Gender Differences in Sorting

    DEFF Research Database (Denmark)

    Merlino, Luca Paolo; Parrotta, Pierpaolo; Pozzoli, Dario

    and causing the most productive female workers to seek better jobs in more female-friendly firms in which they can pursue small career advancements. Nonetheless, gender differences in promotion persist and are found to be similar in all firms when we focus on large career advancements. These results......In this paper, we investigate the sorting of workers in firms to understand gender gaps in labor market outcomes. Using Danish employer-employee matched data, we fiend strong evidence of glass ceilings in certain firms, especially after motherhood, preventing women from climbing the career ladder...... provide evidence of the sticky floor hypothesis, which, together with the costs associated with changing employer, generates persistent gender gaps....

  4. Teleoperated robotic sorting system

    Science.gov (United States)

    Roos, Charles E.; Sommer, Edward J.; Parrish, Robert H.; Russell, James R.

    2000-01-01

    A method and apparatus are disclosed for classifying materials utilizing a computerized touch sensitive screen or other computerized pointing device for operator identification and electronic marking of spatial coordinates of materials to be extracted. An operator positioned at a computerized touch sensitive screen views electronic images of the mixture of materials to be sorted as they are conveyed past a sensor array which transmits sequences of images of the mixture either directly or through a computer to the touch sensitive display screen. The operator manually "touches" objects displayed on the screen to be extracted from the mixture thereby registering the spatial coordinates of the objects within the computer. The computer then tracks the registered objects as they are conveyed and directs automated devices including mechanical means such as air jets, robotic arms, or other mechanical diverters to extract the registered objects.

  5. Resolving sorting mechanisms into exosomes

    NARCIS (Netherlands)

    Stoorvogel, Willem

    2015-01-01

    The complexity of mechanisms driving protein sorting into exosomes is only beginning to emerge. In a paper recently published in Cell Research, Roucourt et al. report that trimming of heparan sulfate side chains of syndecans by endosomal heparanase facilitates sorting into exosomes by the formation

  6. Intra- and interboar variability in flow cytometric sperm sex sorting.

    Science.gov (United States)

    Alkmin, Diego V; Parrilla, Inmaculada; Tarantini, Tatiana; Parlapan, Laura; Del Olmo, David; Vazquez, Juan M; Martinez, Emilio A; Roca, Jordi

    2014-08-01

    To improve the efficiency of porcine sperm sex sorting using flow cytometry, the aims of the present study were to determine the relevance of inter- and intraboar variability in sperm sortability and to evaluate the significance of ejaculate semen characteristics in such variability. In addition, the variability among boars in the ability of sex-sorted spermatozoa to survive liquid storage at 15 °C to 17 °C was also evaluated. In total, 132 ejaculates collected from 67 boars of different breeds that were housed at an artificial insemination center were used in three experiments. X- and Y-chromosome-bearing sperm were simultaneously separated according to the Beltsville sperm-sorting technology using a high-speed flow cytometer. In the first experiment, interboar variability in the ability of the ejaculated spermatozoa to undergo the flow-based sex-sorting procedure was observed; the ejaculates of nearly 15% of the boars (n = 67) did not exhibit well-defined X- and Y-chromosome-bearing spermatozoa peaks in the histogram, and the ejaculate sperm concentration demonstrated good predictive value for explaining this variation, as indicated by the area under the receiver operating characteristics curve (0.88, P boars that showed poor sperm sortability (measured according to the presence or not a well-defined split together with sperm sortability parameters) in the first ejaculate (n = 3). In contrast, boars classified as having good sperm sortability in the first ejaculate (n = 5) maintained this condition in five ejaculates collected over the subsequent 5 months. In the third experiment, sex-sorted spermatozoa from boars with good sperm sortability (n = 5) remained viable and motile (above 70% in all boars) after 48 hours of storage at 15 °C to 17 °C, which may facilitate the commercial application of sex-sorted spermatozoa in swine artificial insemination programs. PMID:24930604

  7. National flow cytometry and sorting research resource. Annual progress report, July, 1, 1994--June 30, 1995, Year 12

    Energy Technology Data Exchange (ETDEWEB)

    Jett, J.H.

    1995-04-27

    Research progress utilizing flow cytometry is described. Topics include: rapid kinetics flow cytometry; characterization of size determinations for small DNA fragments; statistical analysis; energy transfer measurements of molecular confirmation in micelles; and enrichment of Mus spretus chromosomes by dual parameter flow sorting and identification of sorted fractions by fluorescence in-situ hybridization onto G-banded mouse metaphase spreads.

  8. Flow Sorting and Sequencing Meadow Fescue Chromosome 4F

    Czech Academy of Sciences Publication Activity Database

    Kopecký, David; Martis, M.; Čihalíková, Jarmila; Hřibová, Eva; Vrána, Jan; Bartoš, Jan; Kopecká, Jitka; Cattonaro, F.; Stočes, Štěpán; Novák, Petr; Neumann, Pavel; Macas, Jiří; Šimková, Hana; Studer, B.; Asp, T.; Baird, J. H.; Navrátil, Petr; Karafiátová, Miroslava; Kubaláková, Marie; Šafář, Jan; Mayer, K.; Doležel, Jaroslav

    2013-01-01

    Roč. 163, č. 3 (2013), s. 1323-1337. ISSN 0032-0889 R&D Projects: GA ČR(CZ) GAP501/11/0504; GA MŠk(CZ) OC10037 Grant ostatní: GA MŠk(CZ) ED0007/01/01 Institutional support: RVO:61389030 ; RVO:60077344 Keywords : SATELLITE DNA-SEQUENCES * FESTUCA-PRATENSIS * LOLIUM-MULTIFLORUM Subject RIV: EB - Genetics ; Molecular Biology Impact factor: 7.394, year: 2013

  9. Dissecting large genomes of Triticeae by chromosome sorting

    Czech Academy of Sciences Publication Activity Database

    Doležel, Jaroslav; Kubaláková, Marie; Suchánková, Pavla; Šafář, Jan; Janda, Jaroslav; Kovářová, Pavlína; Bartoš, Jan; Čihalíková, Jarmila; Šimková, Hana

    Agricultural Research Institute, Kroměříž, 2004 - (Špunar, J.; Janíková, J.), s. 119-126 [International Barley Genetics Symposium /9./. Brno (CZ), 20.06.2004-26.06.2004] R&D Projects: GA ČR GA522/03/0354; GA ČR GA521/04/0607; GA MZe QC1336 Institutional research plan: CEZ:AV0Z5038910 Keywords : Triticeae sp. * flow cytogenetics * FISH Subject RIV: EB - Genetics ; Molecular Biology

  10. On Approximability of Block Sorting

    CERN Document Server

    Narayanaswamy, N S

    2011-01-01

    Block Sorting is a well studied problem, motivated by its applications in Optical Character Recognition (OCR), and Computational Biology. Block Sorting has been shown to be NP-Hard, and two separate polynomial time 2-approximation algorithms have been designed for the problem. But questions like whether a better approximation algorithm can be designed, and whether the problem is APX-Hard have been open for quite a while now. In this work we answer the latter question by proving Block Sorting to be Max-SNP-Hard (APX-Hard). The APX-Hardness result is based on a linear reduction of Max-3SAT to Block Sorting. We also provide a new lower bound for the problem via a new parametrized problem k-Block Merging.

  11. Genetic mapping of paternal sorting of mitochondria in cucumber.

    Science.gov (United States)

    Calderon, Claudia I; Yandell, Brian S; Havey, Michael J

    2012-06-01

    Mitochondria are organelles that have their own DNA; serve as the powerhouses of eukaryotic cells; play important roles in stress responses, programmed cell death, and ageing; and in the vast majority of eukaryotes, are maternally transmitted. Strict maternal transmission of mitochondria makes it difficult to select for better-performing mitochondria, or against deleterious mutations in the mitochondrial DNA. Cucumber is a useful plant for organellar genetics because its mitochondria are paternally transmitted and it possesses one of the largest mitochondrial genomes among all eukaryotes. Recombination among repetitive motifs in the cucumber mitochondrial DNA produces rearrangements associated with strongly mosaic (MSC) phenotypes. We previously reported nuclear control of sorting among paternally transmitted mitochondrial DNAs. The goal of this project was to map paternal sorting of mitochondria as a step towards its eventual cloning. We crossed single plants from plant introduction (PI) 401734 and Cucumis sativus var. hardwickii and produced an F(2) family. A total of 425 F(2) plants were genotyped for molecular markers and testcrossed as the female with MSC16. Testcross families were scored for frequencies of wild-type versus MSC progenies. Discrete segregations for percent wild-type progenies were not observed and paternal sorting of mitochondria was therefore analyzed as a quantitative trait. A major quantitative trait locus (QTL; LOD >23) was mapped between two simple sequence repeats encompassing a 459-kb region on chromosome 3. Nuclear genes previously shown to affect the prevalence of mitochondrial DNAs (MSH1, OSB1, and RECA homologs) were not located near this major QTL on chromosome 3. Sequencing of this region from PI 401734, together with improved annotation of the cucumber genome, should result in the eventual cloning of paternal sorting of mitochondria and provide insights about nuclear control of organellar-DNA sorting. PMID:22350175

  12. ALGORITHM FOR SORTING GROUPED DATA

    Science.gov (United States)

    Evans, J. D.

    1994-01-01

    It is often desirable to sort data sets in ascending or descending order. This becomes more difficult for grouped data, i.e., multiple sets of data, where each set of data involves several measurements or related elements. The sort becomes increasingly cumbersome when more than a few elements exist for each data set. In order to achieve an efficient sorting process, an algorithm has been devised in which the maximum most significant element is found, and then compared to each element in succession. The program was written to handle the daily temperature readings of the Voyager spacecraft, particularly those related to the special tracking requirements of Voyager 2. By reducing each data set to a single representative number, the sorting process becomes very easy. The first step in the process is to reduce the data set of width 'n' to a data set of width '1'. This is done by representing each data set by a polynomial of length 'n' based on the differences of the maximum and minimum elements. These single numbers are then sorted and converted back to obtain the original data sets. Required input data are the name of the data file to read and sort, and the starting and ending record numbers. The package includes a sample data file, containing 500 sets of data with 5 elements in each set. This program will perform a sort of the 500 data sets in 3 - 5 seconds on an IBM PC-AT with a hard disk; on a similarly equipped IBM PC-XT the time is under 10 seconds. This program is written in BASIC (specifically the Microsoft QuickBasic compiler) for interactive execution and has been implemented on the IBM PC computer series operating under PC-DOS with a central memory requirement of approximately 40K of 8 bit bytes. A hard disk is desirable for speed considerations, but is not required. This program was developed in 1986.

  13. Comparative chromosome painting discloses homologous Segments in distantly related mammals

    OpenAIRE

    Scherthan, Harry; Cremer, Thomas; Arnason, U; Weier, Heinz-Ulrich; Lima-De-Faria, A.; Fönicke, L.

    1994-01-01

    Comparative chromosome painting, termed ZOO-FISH, using DNA libraries from flow sorted human chromosomes 1,16,17 and X, and mouse chromosome 11 discloses the presence of syntenic groups in distantly related mammalian Orders ranging from primates (Homo sapiens), rodents (Mus musculus), even-toed ungulates (Muntiacus muntjak vaginalis and Muntiacus reevesi) and whales (Balaenoptera physalus). These mammalian Orders have evolved separately for 55-80 million years (Myr). We conclud...

  14. Chromosomes in the flow to simplify genome analysis

    Czech Academy of Sciences Publication Activity Database

    Doležel, Jaroslav; Vrána, Jan; Šafář, Jan; Bartoš, Jan; Kubaláková, Marie; Šimková, Hana

    2012-01-01

    Roč. 12, č. 3 (2012), s. 397-416. ISSN 1438-793X R&D Projects: GA ČR GAP501/10/1740; GA ČR GAP501/10/1778 Institutional research plan: CEZ:AV0Z50380511 Keywords : Chromosome sorting * Chromosome-specific BAC libraries * Chromosome sequencing Subject RIV: EB - Genetics ; Molecular Biology Impact factor: 3.292, year: 2012

  15. Sorting and selection in posets

    DEFF Research Database (Denmark)

    Daskalakis, Constantinos; Karp, Richard M.; Mossel, Elchanan;

    2011-01-01

    Classical problems of sorting and searching assume an underlying linear ordering of the objects being compared. In this paper, we study these problems in the context of partially ordered sets, in which some pairs of objects are incomparable. This generalization is interesting from a combinatorial...... from two decades ago by Faigle and Turán. In particular, we present the first algorithm that sorts a width-$w$ poset of size $n$ with query complexity $O(n(w+\\log n))$ and prove that this query complexity is asymptotically optimal. We also describe a variant of Mergesort with query complexity $O......(wn\\log\\frac{n}{w})$ and total complexity $O(w^{2}n\\log\\frac{n}{w})$; an algorithm with the same query complexity was given by Faigle and Turán, but no efficient implementation of that algorithm is known. Both our sorting algorithms can be applied with negligible overhead to the more general problem of reconstructing...

  16. Hybrid optical and acoustic force based sorting

    Science.gov (United States)

    O'Mahoney, Paul; Brodie, Graham W.; Wang, Han; Demore, Christine E. M.; Cochran, Sandy; Spalding, Gabriel C.; MacDonald, Michael P.

    2014-09-01

    We report the combined use of optical sorting and acoustic levitation to give particle sorting. Differing sizes of microparticles are sorted optically both with and without the aid of acoustic levitation, and the results compared to show that the use of acoustic trapping can increase sorting efficiency. The use of a transparent ultrasonic transducer is also shown to streamline the integration of optics and acoustics. We also demonstrate the balance of optical radiation pressure and acoustic levitation to achieve vertical sorting.

  17. A Heapify Based Parallel Sorting Algorithm

    Directory of Open Access Journals (Sweden)

    M. A.A.A. Hija

    2008-01-01

    Full Text Available Quick sort is a sorting algorithm whose worst case running time is θ(n2 on an input array of n numbers. It is the best practical for sorting because it has the advantage of sorting in place. Problem statement: Behavior of quick sort is complex, we proposed in-place 2m threads parallel heap sort algorithm which had advantage in sorting in place and had better performance than classical sequential quick sort in running time. Approach: The algorithm consisted of several stages, in first stage; it splits input data into two partitions, next stages it did the same partitioning for prior stage which had been spitted until 2 m partitions was reached equal to the number of available processors, finally it used heap sort to sort respectively ordered of non internally sorted partitions in parallel. Results: Results showed the speed of algorithm about double speed of classical Quick sort for a large input size. The number of comparisons needed was reduced significantly. Conclusion: In this study we had been proposed a sorting algorithm that uses less number of comparisons with respect to original quick sort that in turn requires less running time to sort the same input data.

  18. Deformability-based capsule sorting

    Science.gov (United States)

    Le Goff, Anne; Munier, Nadege; Maire, Pauline; Edwards-Levy, Florence; Salsac, Anne-Virginie

    2015-11-01

    Many microfluidic devices have been developed for cancer diagnosis applications, most of which relying on costly antibodies. Since some cancer cells display abnormal mechanical properties, new sorting tools based on mechanical sensing are of particular interest. We present a simple, passive pinched flow microfluidic system for capsule sorting. The device consists of a straight microchannel containing a cylindrical obstacle. Thanks to a flow-focusing module placed at the channel entrance, capsules arrive well-centered in the vicinity of the obstacle. Pure size-sorting can be achieved at low shear rate. When increasing the shear rate, capsules are deformed in the narrow space between the pillar and the wall. The softer the capsule, the more tightly it wraps around the obstacle. After the obstacle, streamlines diverge, allowing for the separation between soft capsules, that follow central streamlines, and stiff capsules, that drift away from the obstacle with a wider angle. This proves that we have developed a flexible multipurpose sorting microsystem based on a simple design.

  19. Assembly and sorting of homologous BAC contigs in allotetraploid cotton genomes

    Science.gov (United States)

    Upland cotton (G. hirsutum) is a diploidized allopolyploid species containing At and Dt sub-genomes that have partial homology. Assembly and sorting of homologous BAC contigs into their subgenomes and further to individual chromosomes are of both great interest and great challenge for genome-wide i...

  20. Chromosomal aberration

    International Nuclear Information System (INIS)

    Chromosomal aberrations are classified into two types, chromosome-type and chromatid-type. Chromosom-type aberrations include terminal deletion, dicentric, ring and interstitial deletion, and chromatid-type aberrations include achromatic lesion, chromatid deletion, isochromatid deletion and chromatid exchange. Clastogens which induce chromosomal aberration are divided into ''S-dependent'' agents and ''S-independent''. It might mean whether they can induce double strand breaks independent of the S phase or not. Double strand breaks may be the ultimate lesions to induce chromosomal aberrations. Caffeine added even in the G2 phase appeared to modify the frequency of chromatid aberrations induced by X-rays and mitomycin C. Those might suggest that the G2 phase involves in the chromatid aberration formation. The double strand breaks might be repaired by ''G2 repair system'', the error of which might yield breakage types of chromatid aberrations and the by-pass of which might yield chromatid exchanges. Chromosome-type aberrations might be formed in the G1 phase. (author)

  1. Sorted.

    Science.gov (United States)

    Towers, S

    1997-04-01

    Each year in Accident and Emergency an increasing number of young people present with acute problems related to social drugs. These problems range from mild symptoms to life-threatening conditions, many of which can be extremely difficult and time consuming for staff to manage. It has become apparent that as with sex the experimental age for taking drugs is getting younger as youths are now far more 'streetwise' than their predecessors. This is one of the main reasons for this paper being written; it is imperative that staff are equipped with the appropriate knowledge to deal with the challenge and are educated about the problems associated with current drug trends. This potentially improves the quality of care and, in turn, good communication improves relationships. Ecstasy is once again becoming increasingly popular within mainstream clubs, as recently highlighted in the media, and with it reappear its problems. This article discusses the historical aspects of Ecstasy and aims to educate staff about its use and effects and provides health promotion advice for those who are involved in the care of people who take Ecstasy. PMID:9171546

  2. Swarm-Based Spatial Sorting

    CERN Document Server

    Amos, Martyn

    2008-01-01

    Purpose: To present an algorithm for spatially sorting objects into an annular structure. Design/Methodology/Approach: A swarm-based model that requires only stochastic agent behaviour coupled with a pheromone-inspired "attraction-repulsion" mechanism. Findings: The algorithm consistently generates high-quality annular structures, and is particularly powerful in situations where the initial configuration of objects is similar to those observed in nature. Research limitations/implications: Experimental evidence supports previous theoretical arguments about the nature and mechanism of spatial sorting by insects. Practical implications: The algorithm may find applications in distributed robotics. Originality/value: The model offers a powerful minimal algorithmic framework, and also sheds further light on the nature of attraction-repulsion algorithms and underlying natural processes.

  3. Lipid sorting revealed by SANS

    International Nuclear Information System (INIS)

    We have investigated the lipid sorting in a binary small unilamellar vesicle (SUV) composed of cone-shaped (1,2-dihexanoyl-sn-glycero-3-phosphocholine: DHPC) and cylinder-shaped (1,2-dipalmitoyl-sn-glycero-3-phosphocholine: DPPC) lipids. In order to reveal the lipid sorting we adopted a contrast matching technique of small angle neutron scattering (SANS), which extracts the distribution of deuterated lipids in the bilayer quantitatively. The SANS profile of deuterated SUVs at the contrast matching condition showed a characteristic scattering profile, indicating an asymmetric distribution of cone-shaped lipids in the bilayer. The fitting of the observed SANS profile revealed that most DHPC molecules are localized in the outer leaflet, which supports that the shape of the lipid is strongly coupled with the membrane curvature. We compared the obtained asymmetric distribution of the cone-shaped lipids in the bilayer with the theoretical prediction based on the curvature energy model. (author)

  4. Single beam atom sorting machine

    International Nuclear Information System (INIS)

    We create two overlapping one-dimensional optical lattices using a single laser beam, a spatial light modulator and a high numerical aperture lens. These lattices have the potential to trap single atoms, and using the dynamic capabilities of the spatial light modulator may shift and sort atoms to a minimum atom-atom separation of 1.52 μm. We show how a simple feedback circuit can compensate for the spatial light modulator's intensity modulation

  5. Swarm-Based Spatial Sorting

    OpenAIRE

    Amos, Martyn; Don, Oliver

    2008-01-01

    Purpose: To present an algorithm for spatially sorting objects into an annular structure. Design/Methodology/Approach: A swarm-based model that requires only stochastic agent behaviour coupled with a pheromone-inspired "attraction-repulsion" mechanism. Findings: The algorithm consistently generates high-quality annular structures, and is particularly powerful in situations where the initial configuration of objects is similar to those observed in nature. Research limitations/implications: Exp...

  6. Localization of Sry gene on Y chromosome of Muntjac munticus vaginalis

    Institute of Scientific and Technical Information of China (English)

    2001-01-01

    The chromosomes 1, Y1, Y2 of Muntjac munticus vaginalis were isolated by fluorescence activated chromosome sorting and amplified by degenerate oligonucleotide primed-polymerase chain reaction (DOP-PCR). A primer pair within human Sry HMG box was designed and the Sry gene of the male M. m vaginalis was amplified. The product was cloned and sequenced. The result proved that Sry is located on chromosome Y2, which is the sex-determining chromosome in the male M. m vaginalis.

  7. Synthetic chromosomes.

    Science.gov (United States)

    Schindler, Daniel; Waldminghaus, Torsten

    2015-11-01

    What a living organism looks like and how it works and what are its components-all this is encoded on DNA, the genetic blueprint. Consequently, the way to change an organism is to change its genetic information. Since the first pieces of recombinant DNA have been used to transform cells in the 1970s, this approach has been enormously extended. Bigger and bigger parts of the genetic information have been exchanged or added over the years. Now we are at a point where the construction of entire chromosomes becomes a reachable goal and first examples appear. This development leads to fundamental new questions, for example, about what is possible and desirable to build or what construction rules one needs to follow when building synthetic chromosomes. Here we review the recent progress in the field, discuss current challenges and speculate on the appearance of future synthetic chromosomes. PMID:26111960

  8. Word Sorts for General Music Classes

    Science.gov (United States)

    Cardany, Audrey Berger

    2015-01-01

    Word sorts are standard practice for aiding children in acquiring skills in English language arts. When included in the general music classroom, word sorts may aid students in acquiring a working knowledge of music vocabulary. The author shares a word sort activity drawn from vocabulary in John Lithgow's children's book "Never Play…

  9. Sorting device suitable for nuclear plants

    International Nuclear Information System (INIS)

    A device is described for handling and sorting various items and especially linen from laundry bags of a nuclear plant for separation of contaminated and non contaminated objects before washing. It includes reception means, a glove box type enclosure for sorting and exit means of sorted items. Preferentially a ventilation maintains a depression inside

  10. On the Construction of Sorted Reactive Systems

    DEFF Research Database (Denmark)

    Birkedal, Lars; Debois, Søren; Hildebrandt, Thomas

    2008-01-01

    We develop a theory of sorted bigraphical reactive systems. Every application of bigraphs in the literature has required an extension, a sorting, of pure bigraphs. In turn, every such application has required a redevelopment of the theory of pure bigraphical reactive systems for the sorting at hand...

  11. Design of Garbage Sorting Machine

    Directory of Open Access Journals (Sweden)

    Stephen K. Adzimah

    2009-01-01

    Full Text Available Problem statement: Domestic waste collection, sorting and disposal are major problems in many developing countries such as Ghana. It is an undeniable fact that the environment has been engulfed in filth. This filth comprises of the garbage and waste generated in homes, workplace and industrial setups. Most of this waste has found its way into the streets, gutters, in and around the homes, dung hills and worst of all, water bodies, many of which are sources of the drinking water treated at high costs or not treated at all. Approach: Garbage needs to be sorted into various components and each of such components like textile materials, polythene, foodstuffs, metals and glassware would then have to be handled separately at the disposal or recycling site. Such a process required a certain degree of literacy, discipline and certain basic equipment, for example separate collector bins or sorting bags. In the developed world this is not much a problem because every home has different polythene bags into which the various constituents of domestic waste are put right at the generation point. Separate collection bins were also provided at vantage points for the various types of domestic garbage collection. In the developing countries these arrangements have not been feasible because of the level of literacy, lack of appreciation of the problem, non-availability of the different types of polythene bags and poverty. Currently, most garbage collection in the developing countries is done by depositing every thing into a single container from where they are hauled to be dumped in landfills or burned in incinerators. Refuse disposal by land filling requires a sizeable land for the sole purpose of refuse disposal. This may lead to (1: Encumbering large tracks of prime land, which could not be put to other uses (2: Pollution of ground water by the leachate from the landfills (3: Breeding of leaches, rodents, mosquitoes and (4: Generation of strong stench coming

  12. Advances in plant chromosome genomics

    Czech Academy of Sciences Publication Activity Database

    Doležel, Jaroslav; Vrána, Jan; Cápal, Petr; Kubaláková, Marie; Burešová, Veronika; Šimková, Hana

    2014-01-01

    Roč. 32, č. 1 (2014), s. 122-136. ISSN 0734-9750 R&D Projects: GA ČR GAP501/10/1740; GA ČR GAP501/10/1778; GA ČR GBP501/12/G090; GA MŠk(CZ) LO1204 Grant ostatní: GA MŠk(CZ) ED0007/01/01 Institutional support: RVO:61389030 Keywords : BAC library * Chromosome sorting * Cytogenetics Subject RIV: EB - Genetics ; Molecular Biology Impact factor: 9.015, year: 2014

  13. Comparative chromosome painting discloses homologous segments in distantly related mammals.

    Science.gov (United States)

    Scherthan, H; Cremer, T; Arnason, U; Weier, H U; Lima-de-Faria, A; Frönicke, L

    1994-04-01

    Comparative chromosome painting, termed ZOO-FISH, using DNA libraries from flow sorted human chromosomes 1, 16, 17 and X, and mouse chromosome 11 discloses the presence of syntenic groups in distantly related mammalian orders ranging from primates (Homo sapiens), rodents (Mus musculus), even-toed ungulates (Muntiacus muntjak vaginalis and Muntiacus reevesi) and whales (Balaenoptera physalus). These mammalian orders have evolved separately for 55-80 million years (Myr). We conclude that ZOO-FISH can be used to generate comparative chromosome maps of a large number of mammalian species. PMID:8054973

  14. Ultra-Perfect Sorting Scenarios

    Science.gov (United States)

    Ouangraoua, Aïda; Bergeron, Anne; Swenson, Krister M.

    Perfection has been used as a criteria to select rearrangement scenarios since 2004. However, there is a fundamental bias towards extant species in the original definition: ancestral species are not bound to perfection. Here we develop a new theory of perfection that takes an egalitarian view of species, and apply it to the complex evolution of mammal chromosome X.

  15. How does the Shift-insertion sort behave when the sorting elements follow a Normal distribution?

    CERN Document Server

    Pal, Mita; Mahanti, N C

    2012-01-01

    The present paper examines the behavior of Shift-insertion sort (insertion sort with shifting) for normal distribution inputs and is in continuation of our earlier work on this new algorithm for discrete distribution inputs, namely, negative binomial. Shift insertion sort is found more sensitive for main effects but not for all interaction effects compared to conventional insertion sort.

  16. Chromosome number9 specific repetitive DNA sequence

    International Nuclear Information System (INIS)

    Human repetitive DNA libraries have been constructed and various recombinant DNA clones isolated that are likely candidates for chromosome specific sequences. The first clone tested (pHuR 98; plasmid human repeat 98) was biotinylated and hybridized to human chromosomes in situ. The hybridized recombinant probe was detected with fluoresceinated avidin, and chromosomes were counter-stained with either propidium iodide or distamycin-DAPI. Specific hybridization to chromosome band 9q1 was obtained. The localization was confirmed by hybridizing radiolabeled pHuR 98 DNA to human chromosomes sorted by flow cytometry. Various methods, including orthogonal field pulsed gel electrophoresis analysis indicate that 75 kilobase blocks of this sequence are interspersed with other repetitive DNA sequences in this chromosome band. This study is the first to report a human repetitive DNA sequence uniquely localized to a specific chromosome. This clone provides an easily detected and highly specific chromosomal marker for molecular cytogenetic analyses in numerous basic research and clinical studies

  17. Polarized sorting and trafficking in epithelial cells

    Institute of Scientific and Technical Information of China (English)

    Xinwang Cao; Michal A Surma; Kai Simons

    2012-01-01

    The polarized distribution of proteins and lipids at the surface membrane of epithelial cells results in the formation of an apical and a basolateral domain,which are separated by tight junctions.The generation and maintenance of epithelial polarity require elaborate mechanisms that guarantee correct sorting and vectorial delivery of cargo molecules.This dynamic process involves the interaction of sorting signals with sorting machineries and the formation of transport carriers.Here we review the recent advances in the field of polarized sorting in epithelial cells.We especially highlight the role of lipid rafts in apical sorting.

  18. Marital Sorting and Parental Wealth

    OpenAIRE

    Kerwin Kofi Charles; Erik Hurst; Alexandra Killewald

    2011-01-01

    Using data from the Panel Study of Income Dynamics (PSID), this paper studies the degree to which spouses sort in the marriage market on the basis of parental wealth. We estimate a variety of models, including transition matrices, OLS and TSLS models to deal with measurement error in wealth reports. Our various results show that men and women in the U.S. marry spouses whose parents have wealth similar to that of their own parents; and are very unlikely to marry persons from very different par...

  19. Microfluidic systems for optical sorting

    Czech Academy of Sciences Publication Activity Database

    Ježek, Jan; Pilát, Zdeněk; Šerý, Mojmír; Kaňka, Jan; Samek, Ota; Bernatová, Silvie; Zemánek, Pavel

    Bellingham : SPIE, 2012, 86970W: 1-9. ISBN 978-0-8194-9481-8. [CPS 2012. Czech-Polish-Slovak Optical Conference on Wave and Quantum Aspects of Contemporary Optics /18./. Ostravice (CZ), 03.09.2012-07.09.2012] R&D Projects: GA MPO FR-TI1/433; GA MŠk ED0017/01/01; GA ČR GAP205/11/1687 Institutional support: RVO:68081731 Keywords : microfluidic * cell sorting * optical tweezers * Raman spectroscopy Subject RIV: BH - Optics, Masers, Lasers

  20. Highly conserved repetitive DNA sequence, (TTAGGG)n, present at the telomeres of human chromosomes

    International Nuclear Information System (INIS)

    A highly conserved repetitive DNA sequence, (TTAGGG)n, has been isolated from a human recombinant repetitive DNA library. Quantitative hybridization to chromosomes sorted by flow cytometry indicates that comparable amounts of this sequence are present on each human chromosome. Both fluorescent in situ hybridization and BAL-31 nuclease digestion experiments reveal major clusters of this sequence at the telomeres of all human chromosomes. The evolutionary conservation of this DNA sequence, its terminal chromosomal location in a variety of higher eukaryotes (regardless of chromosome number or chromosome length), and its similarity to functional telomeres isolated from lower eukaryotes suggest that this sequence is a functional human telomere

  1. Sorting and Selection in Posets

    CERN Document Server

    Daskalakis, Constantinos; Mossel, Elchanan; Riesenfeld, Samantha; Verbin, Elad

    2007-01-01

    Classical problems of sorting and searching assume an underlying linear ordering of the objects being compared. In this paper, we study a more general setting, in which some pairs of objects are incomparable. This generalization is relevant in applications related to rankings in sports, college admissions, or conference submissions. It also has potential applications in biology, such as comparing the evolutionary fitness of different strains of bacteria, or understanding input-output relations among a set of metabolic reactions or the causal influences among a set of interacting genes or proteins. Our results improve and extend results from two decades ago of Faigle and Tur\\'{a}n. A measure of complexity of a partially ordered set (poset) is its width. Our algorithms obtain information about a poset by queries that compare two elements. We present an algorithm that sorts, i.e. completely identifies, a width w poset of size n and has query complexity O(wn + nlog(n)), which is within a constant factor of the in...

  2. Fast Parallel Sorting Algorithms on GPUs

    Directory of Open Access Journals (Sweden)

    Bilal Jan

    2012-12-01

    Full Text Available This paper presents a comparative analysis of the three widely used parallel sorting algorithms: Odd-Even sort, Rank sort and Bitonic sort in terms of sorting rate, sorting time and speed-up on CPU anddifferent GPU architectures. Alongside we have implemented novel parallel algorithm: min-max butterflynetwork, for finding minimum and maximum in large data sets. All algorithms have been implementedexploiting data parallelism model, for achieving high performance, as available on multi-core GPUsusing the OpenCL specification. Our results depicts minimum speed-up19x of bitonic sort against oddevensorting technique for small queue sizes on CPU and maximum of 2300x speed-up for very largequeue sizes on Nvidia Quadro 6000 GPU architecture. Our implementation of full-butterfly networksorting results in relatively better performance than all of the three sorting techniques: bitonic, odd-evenand rank sort. For min-max butterfly network, our findings report high speed-up of Nvidia quadro 6000GPU for high data set size reaching 224 with much lower sorting time.

  3. Recyclable Waste Paper Sorting Using Template Matching

    Science.gov (United States)

    Osiur Rahman, Mohammad; Hussain, Aini; Scavino, Edgar; Hannan, M. A.; Basri, Hassan

    This paper explores the application of image processing techniques in recyclable waste paper sorting. In recycling, waste papers are segregated into various grades as they are subjected to different recycling processes. Highly sorted paper streams will facilitate high quality end products, and save processing chemicals and energy. Since 1932 to 2009, different mechanical and optical paper sorting methods have been developed to fill the demand of paper sorting. Still, in many countries including Malaysia, waste papers are sorted into different grades using manual sorting system. Due to inadequate throughput and some major drawbacks of mechanical paper sorting systems, the popularity of optical paper sorting systems is increased. Automated paper sorting systems offer significant advantages over human inspection in terms of fatigue, throughput, speed, and accuracy. This research attempts to develop a smart vision sensing system that able to separate the different grades of paper using Template Matching. For constructing template database, the RGB components of the pixel values are used to construct RGBString for template images. Finally, paper object grade is identified based on the maximum occurrence of a specific template image in the search image. The outcomes from the experiment in classification for White Paper, Old Newsprint Paper and Old Corrugated Cardboard are 96%, 92% and 96%, respectively. The remarkable achievement obtained with the method is the accurate identification and dynamic sorting of all grades of papers using simple image processing techniques.

  4. Energy efficient data sorting using standard sorting algorithms

    KAUST Repository

    Bunse, Christian

    2011-01-01

    Protecting the environment by saving energy and thus reducing carbon dioxide emissions is one of todays hottest and most challenging topics. Although the perspective for reducing energy consumption, from ecological and business perspectives is clear, from a technological point of view, the realization especially for mobile systems still falls behind expectations. Novel strategies that allow (software) systems to dynamically adapt themselves at runtime can be effectively used to reduce energy consumption. This paper presents a case study that examines the impact of using an energy management component that dynamically selects and applies the "optimal" sorting algorithm, from an energy perspective, during multi-party mobile communication. Interestingly, the results indicate that algorithmic performance is not key and that dynamically switching algorithms at runtime does have a significant impact on energy consumption. © Springer-Verlag Berlin Heidelberg 2011.

  5. Chromosome Microarray.

    Science.gov (United States)

    Anderson, Sharon

    2016-01-01

    Over the last half century, knowledge about genetics, genetic testing, and its complexity has flourished. Completion of the Human Genome Project provided a foundation upon which the accuracy of genetics, genomics, and integration of bioinformatics knowledge and testing has grown exponentially. What is lagging, however, are efforts to reach and engage nurses about this rapidly changing field. The purpose of this article is to familiarize nurses with several frequently ordered genetic tests including chromosomes and fluorescence in situ hybridization followed by a comprehensive review of chromosome microarray. It shares the complexity of microarray including how testing is performed and results analyzed. A case report demonstrates how this technology is applied in clinical practice and reveals benefits and limitations of this scientific and bioinformatics genetic technology. Clinical implications for maternal-child nurses across practice levels are discussed. PMID:27276104

  6. Fixing the Sorting Algorithm for Android, Java and Python

    NARCIS (Netherlands)

    Gouw, C.P.T. de; Boer, F.S. de

    2015-01-01

    Tim Peters developed the Timsort hybrid sorting algorithm in 2002. TimSort was first developed for Python, a popular programming language, but later ported to Java (where it appears as java.util.Collections.sort and java.util.Arrays.sort). TimSort is today used as the default sorting algorithm in Ja

  7. A nonparametric Bayesian alternative to spike sorting

    OpenAIRE

    Wood, Frank; Black, Michael J.

    2008-01-01

    The analysis of extra-cellular neural recordings typically begins with careful spike sorting and all analysis of the data then rests on the correctness of the resulting spike trains. In many situations this is unproblematic as experimental and spike sorting procedures often focus on well isolated units. There is evidence in the literature, however, that errors in spike sorting can occur even with carefully collected and selected data. Additionally, chronically implanted electrodes and arrays ...

  8. Fast algorithms for sorting and searching strings

    Energy Technology Data Exchange (ETDEWEB)

    Bentley, J.L. [Bell Labs., Murray Hill, NJ (United States); Sedgewick, R. [Princeton Univ., NJ (United States)

    1997-06-01

    We present theoretical algorithms for sorting and searching multikey data, and derive from them practical C implementations for applications in which keys are character strings. The sorting algorithm blends Quicksort and radix sort; it is competitive with the best known C sort codes. The searching algorithm blends tries and binary search trees; it is faster than hashing and other commonly used search methods. The basic ideas behind the algorithms date back at least to the 1960s, but their practical utility has been overlooked. We also present extensions to more complex string problems, such as partial-match searching.

  9. Design and realization of sort manipulator of crystal-angle sort machine

    Science.gov (United States)

    Wang, Ming-shun; Chen, Shu-ping; Guan, Shou-ping; Zhang, Yao-wei

    2005-12-01

    It is a current tendency of development in automation technology to replace manpower with manipulators in working places where dangerous, harmful, heavy or repetitive work is involved. The sort manipulator is installed in a crystal-angle sort machine to take the place of manpower, and engaged in unloading and sorting work. It is the outcome of combing together mechanism, electric transmission, and pneumatic element and micro-controller control. The step motor makes the sort manipulator operate precisely. The pneumatic elements make the sort manipulator be cleverer. Micro-controller's software bestows some simple artificial intelligence on the sort manipulator, so that it can precisely repeat its unloading and sorting work. The combination of manipulator's zero position and step motor counting control puts an end to accumulating error in long time operation. A sort manipulator's design in the practice engineering has been proved to be correct and reliable.

  10. Development of chromosome-arm-specific microsatellite markers in Triticum aestivum (Poaceae) using NGS technology

    Czech Academy of Sciences Publication Activity Database

    Nie, X.; Li, B.; Wang, L.; Liu, P.; Biradar, S. S.; Li, T.; Doležel, Jaroslav; Edwards, D.; Luo, M.; Weining, S.

    2012-01-01

    Roč. 99, č. 9 (2012), e369-e371. ISSN 0002-9122 Institutional research plan: CEZ:AV0Z50380511 Keywords : chromosome-arm-specific DNA * flow-sorted chromosomes * next-generation sequencing Subject RIV: EB - Genetics ; Molecular Biology Impact factor: 2.586, year: 2012

  11. First Survey of the Wheat Chromosome 5A Composition through a Next Generation Sequencing Approach

    Czech Academy of Sciences Publication Activity Database

    Vitulo, N.; Albiero, A.; Forcato, C.; Šimková, Hana; Kubaláková, Marie; Perrotta, G.; Doležel, Jaroslav; Cattivelli, L.

    2011-01-01

    Roč. 6, č. 10 (2011), s. 1-14. E-ISSN 1932-6203 R&D Projects: GA MŠk ED0007/01/01 Institutional research plan: CEZ:AV0Z50380511 Keywords : wheat chromosome 5A * Chromosome arm sorting * DNA amplification Subject RIV: EB - Genetics ; Molecular Biology Impact factor: 4.092, year: 2011

  12. Engineering a Cache-Oblivious Sorting Algorithm

    DEFF Research Database (Denmark)

    Brodal, Gerth Stølting; Fagerberg, Rolf; Vinther, Kristoffer

    2007-01-01

    This paper is an algorithmic engineering study of cache-oblivious sorting. We investigate by empirical methods a number of implementation issues and parameter choices for the cache-oblivious sorting algorithm Lazy Funnelsort, and compare the final algorithm with Quicksort, the established standard...

  13. Data Sorting Using Graphics Processing Units

    Directory of Open Access Journals (Sweden)

    M. J. Mišić

    2012-06-01

    Full Text Available Graphics processing units (GPUs have been increasingly used for general-purpose computation in recent years. The GPU accelerated applications are found in both scientific and commercial domains. Sorting is considered as one of the very important operations in many applications, so its efficient implementation is essential for the overall application performance. This paper represents an effort to analyze and evaluate the implementations of the representative sorting algorithms on the graphics processing units. Three sorting algorithms (Quicksort, Merge sort, and Radix sort were evaluated on the Compute Unified Device Architecture (CUDA platform that is used to execute applications on NVIDIA graphics processing units. Algorithms were tested and evaluated using an automated test environment with input datasets of different characteristics. Finally, the results of this analysis are briefly discussed.

  14. A microfabricated platform for chromosome separation and analysis

    International Nuclear Information System (INIS)

    More and more diseases find their cause in malfunctioning genes. There is therefore still need for rapid, low-cost and direct methods to accurately perform genetic analysis. Currently the process takes a long time to complete and is very expensive. We are proposing a system that will be able to isolate white blood cells from blood, lyse them in order to extract the chromosomes and then perform chromosome sorting on chip. As the physical properties of the chromosomes, such as size and dielectric properties, are needed for designing the chip, we have measured them using an AFM microscope

  15. Enhancement of Selection, Bubble and Insertion Sorting Algorithm

    Directory of Open Access Journals (Sweden)

    Muhammad Farooq Umar

    2014-07-01

    Full Text Available In everyday life there is a large amount of data to arrange because sorting removes any ambiguities and make the data analysis and data processing very easy, efficient and provides with cost less effort. In this study a set of improved sorting algorithms are proposed which gives better performance and design idea. In this study five new sorting algorithms (Bi-directional Selection Sort, Bi-directional bubble sort, MIDBiDirectional Selection Sort, MIDBidirectional bubble sort and linear insertion sort are presented. Bi-directional Selection Sort and MIDBiDirectional Selection Sort are the enhancement on basic selection sort while Bidirectional bubble sort and MIDBidirectional bubble sort are the enhancement on basic bubble sort by changing the selection and swapping mechanism of data for sorting. Enhanced sorting algorithms reduced the iteration by half and quarter times respectively. Asymptotically complexities of these algorithms are reduced to O (n2/2 and O (n2/4 from O (n2. Linear insertion sort is the enhancement of insertion sort by changing the design of algorithm (convert two loops to one loop. So asymptotically this algorithm is converted to linear time complexity from quadratic complexity. These sorting algorithms are described using C. The proposed algorithms are analyzed using asymptotic analysis and also using machine-running time and compared with their basic sorting algorithms. In this study we also discuss how the performance and complexity can be improved by optimizing the code and design.

  16. An Unsupervised Online Spike-Sorting Framework.

    Science.gov (United States)

    Knieling, Simeon; Sridharan, Kousik S; Belardinelli, Paolo; Naros, Georgios; Weiss, Daniel; Mormann, Florian; Gharabaghi, Alireza

    2016-08-01

    Extracellular neuronal microelectrode recordings can include action potentials from multiple neurons. To separate spikes from different neurons, they can be sorted according to their shape, a procedure referred to as spike-sorting. Several algorithms have been reported to solve this task. However, when clustering outcomes are unsatisfactory, most of them are difficult to adjust to achieve the desired results. We present an online spike-sorting framework that uses feature normalization and weighting to maximize the distinctiveness between different spike shapes. Furthermore, multiple criteria are applied to either facilitate or prevent cluster fusion, thereby enabling experimenters to fine-tune the sorting process. We compare our method to established unsupervised offline (Wave_Clus (WC)) and online (OSort (OS)) algorithms by examining their performance in sorting various test datasets using two different scoring systems (AMI and the Adamos metric). Furthermore, we evaluate sorting capabilities on intra-operative recordings using established quality metrics. Compared to WC and OS, our algorithm achieved comparable or higher scores on average and produced more convincing sorting results for intra-operative datasets. Thus, the presented framework is suitable for both online and offline analysis and could substantially improve the quality of microelectrode-based data evaluation for research and clinical application. PMID:26711713

  17. Selection sorting Algorithm Visualization Using Flash

    Directory of Open Access Journals (Sweden)

    Hadi Sutopo

    2011-02-01

    Full Text Available This paper is intended to develop an algorithm visualization, particularly selection sorting for an Algorithm and Programming course. Algorithm visualization technology graphically illustrates howalgorithms work. This visualization can be used to explain how all data move to the proper position in order to be sorted in a display computer for education. This research consists of 6 steps which areconcept, design, obtaining content material, assembly, testing, and distribution. During the testing step, the application is run and checked to confirm that it performs exactly what the author has intended and the students can learn selection sorting algorithm by studying the visualization. Subjects of the research were students at Department of Informatics Universitas Persada Indonesia YAI for implementation of the learning. The data were analysed using the analytic descriptive method and interpreted in a narrativeway based on the research findings. The algorithm visualization indicates that students increase their motivation and ability to program variety of sorting in programming language they learn.

  18. Card Sorts, State Tests, and Meaningful Mathematics

    Science.gov (United States)

    Chauvot, Jennifer B.; Benson, Sharon L. D.

    2008-01-01

    This article shares card-sorting activities that involve state-mandated test items to use with prospective and practicing mathematics teachers to teach about accountability measures while exploring reform-minded mathematics instruction recommendations. (Contains 2 figures.)

  19. Quantum Database Search can do without Sorting

    CERN Document Server

    Patel, A

    2001-01-01

    Sorting is a fundamental computational process, which facilitates subsequent searching of a database. It can be thought of as factorisation of the search process. The location of a desired item in a sorted database can be found by classical queries that inspect one letter of the label at a time. For an unsorted database, no such classical quick search algorithm is available. If the database permits quantum queries, however, then mere digitisation is sufficient for efficient search. Sorting becomes redundant with the quantum superposition of states. A quantum algorithm is written down which locates the desired item in an unsorted database a factor of two faster than the best classical algorithm can in a sorted database. This algorithm has close resemblance to the assembly process in DNA replication.

  20. Cell sorting by deterministic cell rolling

    OpenAIRE

    Choi, Sungyoung; Karp, Jeffrey M.; Karnik, Rohit

    2011-01-01

    This communication presents the concept of “deterministic cell rolling”, which leverages transient cell-surface molecular interactions that mediate cell rolling to sort cells with high purity and efficiency in a single step.

  1. Sorting pathways of mitochondrial inner membrane proteins

    OpenAIRE

    Mahlke, Kerstin; Pfanner, Nikolaus; Martin, Jörg; Horwich, Arthur; Hartl, Franz-Ulrich; Neupert, Walter

    1990-01-01

    Two distinct pathways of sorting and assembly of nuclear-encoded mitochondrial inner membrane proteins are described. In the first pathway, precursor proteins that carry amino-terminal targeting signals are initially translocated via contact sites between both mitochondrial membranes into the mitochondrial matrix. They become proteolytically processed, interact with the 60-kDa heat-shock protein hsp60 in the matrix and are retranslocated to the inner membrane. The sorting of subunit 9 of Neur...

  2. Another Definition of Order—Sorted Algebra

    Institute of Scientific and Technical Information of China (English)

    何自强

    1998-01-01

    In this paper the definition of order-sorted algebra is generalized by introducing transformation functions between subtypes and supertypes.According to our definition,a type needn't be a subset of its supertype and a record model may form an order-sorted algebra.A new definition of equation is given.It has also been proved that equational theories and describing single inheritance have the initial model.

  3. Mitotic chromosome structure

    International Nuclear Information System (INIS)

    Mounting evidence is compiling linking the physical organizational structure of chromosomes and the nuclear structure to biological function. At the base of the physical organizational structure of both is the concept of loop formation. This implies that physical proximity within chromosomes is provided for otherwise distal genomic regions and thus hierarchically organizing the chromosomes. Together with entropy many experimental observations can be explained with these two concepts. Among the observations that can be explained are the measured physical extent of the chromosomes, their shape, mechanical behavior, the segregation into territories (chromosomal and territories within chromosomes), the results from chromosome conformation capture experiments, as well as linking gene expression to structural organization.

  4. A nonparametric Bayesian alternative to spike sorting

    Science.gov (United States)

    Wood, Frank; Black, Michael J.

    2013-01-01

    The analysis of extra-cellular neural recordings typically begins with careful spike sorting and all analysis of the data then rests on the correctness of the resulting spike trains. In many situations this is unproblematic as experimental and spike sorting procedures often focus on well isolated units. There is evidence in the literature, however, that errors in spike sorting can occur even with carefully collected and selected data. Additionally, chronically implanted electrodes and arrays with fixed electrodes cannot be easily adjusted to provide well isolated units. In these situations, multiple units may be recorded and the assignment of waveforms to units may be ambiguous. At the same time, analysis of such data may be both scientifically important and clinically relevant. In this paper we address this issue using a novel probabilistic model that accounts for several important sources of uncertainty and error in spike sorting. In lieu of sorting neural data to produce a single best spike train, we estimate a probabilistic model of spike trains given the observed data. We show how such a distribution over spike sortings can support standard neuroscientific questions while providing a representation of uncertainty in the analysis. As a representative illustration of the approach, we analyzed primary motor cortical tuning with respect to hand movement in data recorded with a chronic multi-electrode array in non-human primates. We found that the probabilistic analysis generally agrees with human sorters but suggests the presence of tuned units not detected by humans. PMID:18602697

  5. Hash sort: A linear time complexity multiple-dimensional sort algorithm

    OpenAIRE

    Gilreath, William F.

    2004-01-01

    Sorting and hashing are two completely different concepts in computer science, and appear mutually exclusive to one another. Hashing is a search method using the data as a key to map to the location within memory, and is used for rapid storage and retrieval. Sorting is a process of organizing data from a random permutation into an ordered arrangement, and is a common activity performed frequently in a variety of applications. Almost all conventional sorting algorithms work by comparison, and ...

  6. Chromosome-specific DNA Repeat Probes

    Energy Technology Data Exchange (ETDEWEB)

    Baumgartner, Adolf; Weier, Jingly Fung; Weier, Heinz-Ulrich G.

    2006-03-16

    In research as well as in clinical applications, fluorescence in situ hybridization (FISH) has gained increasing popularity as a highly sensitive technique to study cytogenetic changes. Today, hundreds of commercially available DNA probes serve the basic needs of the biomedical research community. Widespread applications, however, are often limited by the lack of appropriately labeled, specific nucleic acid probes. We describe two approaches for an expeditious preparation of chromosome-specific DNAs and the subsequent probe labeling with reporter molecules of choice. The described techniques allow the preparation of highly specific DNA repeat probes suitable for enumeration of chromosomes in interphase cell nuclei or tissue sections. In addition, there is no need for chromosome enrichment by flow cytometry and sorting or molecular cloning. Our PCR-based method uses either bacterial artificial chromosomes or human genomic DNA as templates with {alpha}-satellite-specific primers. Here we demonstrate the production of fluorochrome-labeled DNA repeat probes specific for human chromosomes 17 and 18 in just a few days without the need for highly specialized equipment and without the limitation to only a few fluorochrome labels.

  7. Effects of sex-sorting and sperm dosage on conception rates of Holstein heifers: is comparable fertility of sex-sorted and conventional semen plausible?

    Science.gov (United States)

    Dejarnette, J M; Leach, M A; Nebel, R L; Marshall, C E; McCleary, C R; Moreno, J F

    2011-07-01

    The conception rates of Holstein heifers after AI with 2.1 or 10 × 10(6) sperm dosages of sex-sorted or conventionally processed sperm were compared. Ejaculates collected by artificial vagina from 8 Holstein sires were cryopreserved at either 2.1 or 10 × 10(6) sperm per dose with or without sorting to 90% purity for X-chromosome-bearing spermatozoa using flow cytometry. All treatments were processed in an egg-yolk (20%), TRIS, glycerol (7%) extender and packaged in color-coded 0.25-mL French straws. Straws (n=350 straws/treatment per sire) were packaged and distributed in aliquots of 12 (3 straws of each treatment) to 51 herds of Holstein heifers. Straw color was recorded in the on-farm record keeping system at the time of AI and retrieved by electronic download. In total, 9,172 services were recovered, providing a mean sample size of 287±3.5 services/sperm dose per semen type within sire (range: 248 to 318). Conception rates were influenced by the main effects of herd, sire, semen type, sperm dosage, and service number. The herd by sperm dosage interaction was the only interaction determined to be significant and implies that some herds (technicians) are more proficient than others at maintaining high levels of conception with decreased sperm dosages. Across herds and sires, the conception rates of each semen type by sperm dosage combination were as follows: 2.1 × 10(6) sex-sorted, 38%, n=2,319; 10 × 10(6) sex-sorted, 44%, n=2,279; 2.1 × 10(6) conventional, 55%, n=2,282; and 10 × 10(6) conventional, 60%, n=2,292. The observation that conception rates of sex-sorted semen were improved by the 10 × 10(6) sperm dosage is encouraging toward the prospectus of development of a commercially available sex-sorted product with improved conception potential over existing technology. However, the failure of the 10 × 10(6) sex-sorted sperm dosage to achieve conception rates comparable to either dosage of conventional semen is somewhat discouraging toward the

  8. Fetal chromosome analysis: screening for chromosome disease?

    DEFF Research Database (Denmark)

    Philip, J; Tabor, Ann; Bang, J;

    1983-01-01

    A + B). Pregnant women 35 years of age, women who previously had a chromosomally abnormal child, families with translocation carriers or other heritable chromosomal disease, families where the father was 50 years or more and women in families with a history of Down's syndrome (group A), were...... unbalanced chromosome abnormality in group A (women with elevated risk) is significantly higher than in group B + C (women without elevated risk) (relative risk 2.4). Women with a known familial translocation and women 40 years or more have a relative risk of 5.7 of having an unbalanced chromosome......The aim of the study was to investigate the rationale of the current indications for fetal chromosome analysis. 5372 women had 5423 amniocentesis performed, this group constituting a consecutive sample at the chromosome laboratory, Rigshospitalet, Copenhagen from March 1973 to September 1980 (Group...

  9. Resolution and evolution of the duck-billed platypus karyotype with an X1Y1X2Y2X3Y3X4Y4X5Y5 male sex chromosome constitution

    OpenAIRE

    Rens, Willem; Grützner, Frank; O'Brien, Patricia C. M.; Fairclough, Helen; Graves, Jennifer A.M.; Ferguson-Smith, Malcolm A

    2004-01-01

    The platypus (2n = 52) has a complex karyotype that has been controversial over the last three decades. The presence of unpaired chromosomes and an unknown sex-determining system especially has defied attempts at conventional analysis. This article reports on the preparation of chromosome-specific probes from flow-sorted chromosomes and their application in the identification and classification of all platypus chromosomes. This work reveals that the male karyotype has 21 pairs of chromosomes ...

  10. Oxide inspecting/sorting concepts. Revision 2

    International Nuclear Information System (INIS)

    The purpose of this document is to summarize the preferred methods for inspecting and sorting plutonium and uranium oxides in preparation for future processing. A limited number of commercially available systems were investigated in preparation for selecting the preferred candidate(s). A complete listing and description of all the oxides to be processed can be located in ''Materials Disposition Acceptance Specifications for the Plutonium Immobilization Project'', document number PIP-98-047. For the purposes of this document, they will be referred to simply as oxides, unless there is a specific characteristic requiring further explanation. The physical transfer of the oxides from a convenience can into a standard oxide can will occur in the High Contamination section of the Unpackaging/Sorting glovebox. The degree of oxide inspecting and sorting performed will depend on the processing that will occur after Unpackaging/Sorting, on the known condition of the oxide when it is first received and the degree of confidence in its condition. The order in which the steps are performed and what occurs in the individual steps may vary depending on the method selected. For the purpose of organization and to help clarify what may occur in the individual steps, the following guidelines are proposed for the Unpackaging/Sorting glovebox. Sorting will involve the capture and removal of foreign particles and/or to detain hard lumps for additional processing in Crush and Grind. Part of the sorting stage will involve reducing workable lumps (de-lumping) into a smaller particle size in preparation for the sizing stage. Sizing will involve classifying/grading the oxide powder into a particle size that is acceptable for the next processing stage. It could involve some mild form of processing (screening, eTc.), but is not expected to include any sophisticated type of processing. Inspection refers to the inspection of the final product to ensure it meets the particle size requirements for

  11. Sorting by Restricted-Length-Weighted Reversals

    Institute of Scientific and Technical Information of China (English)

    Thach Cam Nguyen; Hieu Trung Ngo; Nguyen Bao Nguyen

    2005-01-01

    Classical sorting by reversals uses the unit-cost model, that is, each reversal consumes an equal cost. This model limits the biological meaning of sorting by reversal.Bender and his colleagues extended it by assigning a cost function f(l) = lα for all α≥ 0, where l is the length of the reversed subsequence. In this paper, we extend their results by considering a model in which long reversals are prohibited. Using the same cost function above for permitted reversals, we present tight or nearly tight bounds for the worst-case cost of sorting by reversals. Then we develop algorithms to approximate the optimal cost to sort a given 0/1 sequence as well as a given permutation. Our proposed problems are more biologically meaningful and more algorithmically general and challenging than the problem considered by Bender et al. Furthermore, our bounds are tight and nearly tight, whereas our algorithms provide good approximation ratios compared to the optimal cost to sort 0/1 sequences or permutations by reversals.

  12. Chromosome Painting Reveals Asynaptic Full Alignment of Homologs and HIM-8–Dependent Remodeling of X Chromosome Territories during Caenorhabditis elegans Meiosis

    Science.gov (United States)

    Nabeshima, Kentaro; Mlynarczyk-Evans, Susanna; Villeneuve, Anne M.

    2011-01-01

    During early meiotic prophase, a nucleus-wide reorganization leads to sorting of chromosomes into homologous pairs and to establishing associations between homologous chromosomes along their entire lengths. Here, we investigate global features of chromosome organization during this process, using a chromosome painting method in whole-mount Caenorhabditis elegans gonads that enables visualization of whole chromosomes along their entire lengths in the context of preserved 3D nuclear architecture. First, we show that neither spatial proximity of premeiotic chromosome territories nor chromosome-specific timing is a major factor driving homolog pairing. Second, we show that synaptonemal complex-independent associations can support full lengthwise juxtaposition of homologous chromosomes. Third, we reveal a prominent elongation of chromosome territories during meiotic prophase that initiates prior to homolog association and alignment. Mutant analysis indicates that chromosome movement mediated by association of chromosome pairing centers (PCs) with mobile patches of the nuclear envelope (NE)–spanning SUN-1/ZYG-12 protein complexes is not the primary driver of territory elongation. Moreover, we identify new roles for the X chromosome PC (X-PC) and X-PC binding protein HIM-8 in promoting elongation of X chromosome territories, separable from their role(s) in mediating local stabilization of pairing and association of X chromosomes with mobile SUN-1/ZYG-12 patches. Further, we present evidence that HIM-8 functions both at and outside of PCs to mediate chromosome territory elongation. These and other data support a model in which synapsis-independent elongation of chromosome territories, driven by PC binding proteins, enables lengthwise juxtaposition of chromosomes, thereby facilitating assessment of their suitability as potential pairing partners. PMID:21876678

  13. Feasibility of sex-sorting sperm from the white and the black rhinoceros (Ceratotherium simum, Diceros bicornis).

    Science.gov (United States)

    Behr, B; Rath, D; Mueller, P; Hildebrandt, T B; Goeritz, F; Braun, B C; Leahy, T; de Graaf, S P; Maxwell, W M C; Hermes, R

    2009-08-01

    The objective of these studies was to investigate the practicality of flow cytometric sex-sorting for spermatozoa from the white and the black rhinoceros (Ceratotherium simum, Diceros bicornis). In Experiment 1, four semen extenders were tested regarding their suitability for liquid preservation of spermatozoa before sorting. Dilution in MES-HEPES-based semen extender followed by incubation generated best sperm quality parameters (motility, viability, and acrosome integrity). In Experiment 2, the effect of staining method (15 degrees C for 4 to 6h during transport or 37 degrees C for 1 to 1.5h) on sort efficiency and sperm quality was investigated. Staining at 15 degrees C during transport resulted in a higher percentage of sperm samples showing a resolution of X- and Y-chromosome-bearing populations (60%) compared with that for staining at 37 degrees C after transport (33%) and resulted in superior sperm integrity after staining (43.8+/-11.3% vs. 19.6+/-12.1%). Sort rate was 300 to 700 cells/sec and sort purity, determined for one sorted sample, was 94% for X-chromosome-bearing spermatozoa. In Experiment 3, the highly viscous component of rhinoceros seminal plasma, which complicates the process of sperm sorting, was examined by gel electrophoresis and mass spectrometry. Results suggested a 250-kDa glycoprotein (most likely originating from the bulbourethral gland) to be responsible for the characteristic viscosity of ejaculates. In Experiment 4, viscosity of seminal plasma, as measured by electron spin resonance spectroscopy, was significantly decreased after addition of alpha-amylase or collagenase (0.5 and 3IU per 100 microL seminal plasma, respectively) by 28% and 21%, respectively, with no negative effect on sperm characteristics. The results of this study demonstrate for the first time that rhinoceros spermatozoa can be successfully sorted into high-purity X- and Y-chromosome-bearing populations. Furthermore, the successful liquefaction of viscous ejaculates

  14. Chromosome-based genomics in cereals

    Czech Academy of Sciences Publication Activity Database

    Doležel, Jaroslav; Kubaláková, Marie; Paux, E.; Bartoš, Jan; Feuillet, C.

    2007-01-01

    Roč. 15, č. 1 (2007), s. 51-66. ISSN 0967-3849 R&D Projects: GA ČR GP521/06/P412; GA ČR(CZ) GA521/05/0257; GA ČR GA521/06/1723; GA MŠk ME 884; GA MŠk(CZ) LC06004 Institutional research plan: CEZ:AV0Z50380511 Source of funding: V - iné verejné zdroje ; V - iné verejné zdroje ; V - iné verejné zdroje ; V - iné verejné zdroje ; V - iné verejné zdroje Keywords : Chromosome sorting * chromosome-specific BAC libraries * flow cytometry Subject RIV: EB - Genetics ; Molecular Biology Impact factor: 3.469, year: 2007

  15. Enhancing and Optimization Sorting Algorithms: An Empirical Study

    OpenAIRE

    KARIMIZADEH, Mohammad Mehdi; RAFEAZADEH, Ehsan; AMIRI, Pouran; KHOLGHNIK, Dariush

    2015-01-01

    Abstract. Sorting algorithms are used to sort a list of data. Also sorting is used in other computer operations such as searching, merging, and normalization. Since the sorting is considered as a one of the key operation in computer science, recognition of an optimization approaches can develop this science considerably. Optimization in the sorting algorithms, even in small scale, can cause saving a lot of time.  The main discussion of the paper is on those algorithms which present optimized ...

  16. Development of a Prototype Automated Sorting System for Plastic Recycling

    OpenAIRE

    D. A. Wahab; Hussain, A.; Scavino, E.; Mustafa, M.M.; Basri, H.

    2006-01-01

    Automated sorting for plastic recyclables has been seen as the way forward in the plastic recycling industry. Automated sorting provides significant improvements in terms of efficiency and consistency in the sorting process. In the case of macro sorting, which is the most common type of automated sorting, efficiency is determined by the mechanical details of the material handling system as well as the detection system. This paper provides a review on the state of-the-art technologies that hav...

  17. Micro and nanofluidic structures for cell sorting and genomic analysis

    Science.gov (United States)

    Morton, Keith J.

    Microfluidic systems promise rapid analysis of small samples in a compact and inexpensive format. But direct scaling of lab bench protocols on-chip is challenging because laminar flows in typical microfluidic devices are characterized by non-mixing streamlines. Common microfluidic mixers and sorters work by diffusion, limiting application to objects that diffuse slowly such as cells and DNA. Recently Huang et.al. developed a passive microfluidic element to continuously separate bio-particles deterministically. In Deterministic Lateral Displacement (DLD), objects are sorted by size as they transit an asymmetric array of microfabricated posts. This thesis further develops DLD arrays with applications in three broad new areas. First the arrays are used, not simply to sort particles, but to move streams of cells through functional flows for chemical treatment---such as on-chip immunofluorescent labeling of blood cells with washing, and on-chip E.coli cell lysis with simultaneous chromosome extraction. Secondly, modular tiling of the basic DLD element is used to construct complex particle handling modes that include beam steering for jets of cells and beads. Thirdly, nanostructured DLD arrays are built using Nanoimprint Lithography (NIL) and continuous-flow separation of 100 nm and 200 nm size particles is demonstrated. Finally a number of ancillary nanofabrication techniques were developed in support of these overall goals, including methods to interface nanofluidic structures with standard microfluidic components such as inlet channels and reservoirs, precision etching of ultra-high aspect ratio (>50:1) silicon nanostructures, and fabrication of narrow (˜ 35 nm) channels used to stretch genomic length DNA.

  18. Software information sorting code 'PLUTO-R'

    International Nuclear Information System (INIS)

    A software information sorting code PLUTO-R is developed as one of the supporting codes of the TRITON system for the fusion plasma analysis. The objective of the PLUTO-R code is to sort reference materials of the codes in the TRITON code system. The easiness in the registration of information is especially pursued. As experience and skill in the data registration are not required, this code is usable for construction of general small-scale information system. This report gives an overall description and the user's manual of the PLUTO-R code. (author)

  19. Sorting with Asymmetric Read and Write Costs

    OpenAIRE

    Blelloch, Guy E.; Fineman, Jeremy T.; Gibbons, Phillip B.; Gu, Yan; Shun, Julian

    2016-01-01

    Emerging memory technologies have a significant gap between the cost, both in time and in energy, of writing to memory versus reading from memory. In this paper we present models and algorithms that account for this difference, with a focus on write-efficient sorting algorithms. First, we consider the PRAM model with asymmetric write cost, and show that sorting can be performed in $O\\left(n\\right)$ writes, $O\\left(n \\log n\\right)$ reads, and logarithmic depth (parallel time). Next, we conside...

  20. Radionuclide methods of sorting materials on conveyors

    International Nuclear Information System (INIS)

    Radionuclide methods suitable for sorting multi-component lump materials transported on conveyors are discussed. The methods considered use the different interaction of gamma- and X-radiations with materials of different atomic numbers. A comparison is made between a simple absorption method, a method using simultaneous absorption of photons of two different energies and a combination of the absorption and back-scattering methods. The fields of application of these methods serving to obtain output signals for the control of mechanical or pneumatic sorting devices are outlined. (author)

  1. An optimal procedure for magnet sorting

    International Nuclear Information System (INIS)

    A new magnet sorting method for accelerators is developed. It is based on the linearized analysis of the effects of errors on accelerators. It is implementable in two steps. The first step is completely analytical in character while the second step involves the comparison of computed values with the measured error values. The whole process is repeated at most ''n'' times, where ''n'' is the number of magnets to be chosen from at a time. Simulations of the method, using Mathematica reg-sign, have been implemented for sorting the APS injector synchrotron dipoles and quadrupoles with excellent results

  2. Centrifugally driven microfluidic disc for detection of chromosomal translocations

    DEFF Research Database (Denmark)

    Brøgger, Anna Line; Kwasny, Dorota; Bosco, Filippo G.;

    2012-01-01

    Chromosome translocations are a common cause of congenital disorders and cancer. Current detection methods require use of expensive and highly specialized techniques to identify the chromosome regions involved in a translocation. There is a need for rapid yet specific detection for diagnosis and...... prognosis of patients. In this work we demonstrate a novel, centrifugally-driven microfluidic system for controlled manipulation of oligonucleotides and subsequent detection of chromosomal translocations. The device is fabricated in the form of a disc with capillary burst microvalves employed to control the...... fluid flow. The microvalves in series are designed to enable fluid movement from the center towards the periphery of the disc to handle DNA sequences representing translocation between chromosome 3 and 9. The translocation detection is performed in two hybridization steps in separate sorting and...

  3. Chromosome painting in plants.

    NARCIS (Netherlands)

    Schubert, I.; Fransz, P.F.; Fuchs, J.; Jong, de J.H.

    2001-01-01

    The current 'state-of-art' as to chromosome painting in plants is reviewed. We define different situations described as painting so far: i) Genomic in situ hybridisation (GISH) with total genomic DNA to distinguish alien chromosomes on the basis of divergent dispersed repeats, ii) 'Chromosomal in si

  4. ANALISIS ALGORITMA INSERTION SORT, MERGE SORT DAN IMPLEMENTASINYA DALAM BAHASA PEMROGRAMAN C++

    Directory of Open Access Journals (Sweden)

    Arief Hendra Saptadi

    2013-07-01

    Full Text Available Makalah ini mengetengahkan kajian implementasi dan performa proses pengurutan menggunakan dua algoritma yang berbeda, yaitu Insertion Sort dan Merge Sort. Pada tahap pertama, kedua algoritma tersebut diimplementasikan dalam bahasa C++ untuk mengurutkan sejumlah angka yang diketikkan oleh pengguna. Pada tahap kedua, kode sumber untuk kedua algoritma tersebut diubah untuk dapat mengurutkan angka yang dihasilkan secara acak dengan jumlah angka sebanyak permintaan dari pengguna. Untuk mengetahui seberapa baik performa dalam mengurutkan data, maka dalam tahap terakhir, kedua algoritma tersebut mengurutkan sejumlah angka acak dengan rentang jumlah yang sudah ditentukan dan hasilnya kemudian dibandingkan. Dari eksperimen yang sudah dilakukan, algoritma merge sort telah memperlihatkan performa yang lebih baik, khususnya untuk jumlah data yang banyak (> 10000. Adapun algoritma insertion sort memiliki keuntungan dalam hal kompleksitas algoritma yang lebih rendah terutama dalam kondisi best case dan karena tidak menggunakan rutin rekursi dalam proses pengurutan, maka tidak membutuhkan ruang penyimpanan atau memori sebanyak algoritma Merge Sort. Kata kunci : Algoritma, Insertion Sort, Merge Sort, Performa, Bahasa C++

  5. System for optical sorting of microscopic objects

    DEFF Research Database (Denmark)

    2014-01-01

    The present invention relates to a system for optical sorting of microscopic objects and corresponding method. An optical detection system (52) is capable of determining the positions of said first and/or said second objects. One or more force transfer units (200, 205, 210, 215) are placed in a...

  6. CSP description of some parallel sorting algorithms

    Energy Technology Data Exchange (ETDEWEB)

    Linck, M.H.

    1982-11-01

    Hoare's CSP notation is used to describe 3 parallel sorting algorithms. The first algorithm uses n/2 processes working in parallel, the second uses an array of n parallel processes and the third algorithm is a parallel version of quicksort. 12 references.

  7. SELECTION SORTING ALGORITHM VISUALIZATION USING FLASH

    Directory of Open Access Journals (Sweden)

    Hadi Sutopo

    2011-02-01

    Full Text Available This paper is intended to develop an algorithm visualization, particularly selection sorting for an Algorithm and Programming course. Algorithm visualization technology graphically illustrates how algorithms work. This visualization can be used to explain how all data move to the proper position in order to be sorted in a display computer for education. This research consists of 6 steps which are concept, design, obtaining content material, assembly, testing, and distribution. During the testing step, the application is run and checked to confirm that it performs exactly what the author has intended and the students can learn selection sorting algorithm by studying the visualization. Subjects of the research were students at Department of Informatics Universitas Persada Indonesia YAI for implementation of the learning. The data were analysed using the analytic descriptive method and interpreted in a narrative way based on the research findings. The algorithm visualization indicates that students increase their motivation and ability to program variety of sorting in programming language they learn.

  8. Integration through a Card-Sort Activity

    Science.gov (United States)

    Green, Kris; Ricca, Bernard P.

    2015-01-01

    Learning to compute integrals via the various techniques of integration (e.g., integration by parts, partial fractions, etc.) is difficult for many students. Here, we look at how students in a college level Calculus II course develop the ability to categorize integrals and the difficulties they encounter using a card sort-resort activity. Analysis…

  9. Credit Scores, Race, and Residential Sorting

    Science.gov (United States)

    Nelson, Ashlyn Aiko

    2010-01-01

    Credit scores have a profound impact on home purchasing power and mortgage pricing, yet little is known about how credit scores influence households' residential location decisions. This study estimates the effects of credit scores on residential sorting behavior using a novel mortgage industry data set combining household demographic, credit, and…

  10. Gymnasielærerprofessionens sorte boks

    DEFF Research Database (Denmark)

    Lading, Aase

    eleverne destabiliserer idealiserede indre billeder af den gode lærer, og at flertydige erfaringer med lærer-elevrelationen i forlængelse deraf helst gemmes og glemmes i professionens sorte boks. Dermed indskrænkes mulighederne for professionel refleksion og diskussion af denne vigtige relations betydning...

  11. Systematic Sorting: Teacher Characteristics and Class Assignments

    Science.gov (United States)

    Kalogrides, Demetra; Loeb, Susanna; Beteille, Tara

    2013-01-01

    Although prior research has documented differences in the distribution of teacher characteristics across schools serving different student populations, few studies have examined the extent to which teacher sorting occurs within schools. This study uses data from one large urban school district and compares the class assignments of teachers who…

  12. A multispectral sorting device for wheat kernels

    Science.gov (United States)

    A low-cost multispectral sorting device was constructed using three visible and three near-infrared light-emitting diodes (LED) with peak emission wavelengths of 470 nm (blue), 527 nm (green), 624 nm (red), 850 nm, 940 nm, and 1070 nm. The multispectral data were collected by rapidly (~12 kHz) blin...

  13. Chromosomal rearrangements and karyotype evolution in carnivores revealed by chromosome painting.

    Science.gov (United States)

    Nie, W; Wang, J; Su, W; Wang, D; Tanomtong, A; Perelman, P L; Graphodatsky, A S; Yang, F

    2012-01-01

    Chromosomal evolution in carnivores has been revisited extensively using cross-species chromosome painting. Painting probes derived from flow-sorted chromosomes of the domestic dog, which has one of the most rearranged karyotypes in mammals and the highest dipoid number (2n=78) in carnivores, are a powerful tool in detecting both evolutionary intra- and inter-chromosomal rearrangements. However, only a few comparative maps have been established between dog and other non-Canidae species. Here, we extended cross-species painting with dog probes to seven more species representing six carnivore families: Eurasian lynx (Lynx lynx), the stone marten (Martes foina), the small Indian civet (Viverricula indica), the Asian palm civet (Paradoxurus hermaphrodites), Javan mongoose (Hepestes javanicas), the raccoon (Procyon lotor) and the giant panda (Ailuropoda melanoleuca). The numbers and positions of intra-chromosomal rearrangements were found to differ among these carnivore species. A comparative map between human and stone marten, and a map among the Yangtze finless porpoise (Neophocaena phocaenoides asiaeorientalis), stone marten and human were also established to facilitate outgroup comparison and to integrate comparative maps between stone marten and other carnivores with such maps between human and other species. These comparative maps give further insight into genome evolution and karyotype phylogenetic relationships among carnivores, and will facilitate the transfer of gene mapping data from human, domestic dog and cat to other species. PMID:22086079

  14. Chromosomal rearrangements and karyotype evolution in carnivores revealed by chromosome painting

    Science.gov (United States)

    Nie, W; Wang, J; Su, W; Wang, D; Tanomtong, A; Perelman, P L; Graphodatsky, A S; Yang, F

    2012-01-01

    Chromosomal evolution in carnivores has been revisited extensively using cross-species chromosome painting. Painting probes derived from flow-sorted chromosomes of the domestic dog, which has one of the most rearranged karyotypes in mammals and the highest dipoid number (2n=78) in carnivores, are a powerful tool in detecting both evolutionary intra- and inter-chromosomal rearrangements. However, only a few comparative maps have been established between dog and other non-Canidae species. Here, we extended cross-species painting with dog probes to seven more species representing six carnivore families: Eurasian lynx (Lynx lynx), the stone marten (Martes foina), the small Indian civet (Viverricula indica), the Asian palm civet (Paradoxurus hermaphrodites), Javan mongoose (Hepestes javanicas), the raccoon (Procyon lotor) and the giant panda (Ailuropoda melanoleuca). The numbers and positions of intra-chromosomal rearrangements were found to differ among these carnivore species. A comparative map between human and stone marten, and a map among the Yangtze finless porpoise (Neophocaena phocaenoides asiaeorientalis), stone marten and human were also established to facilitate outgroup comparison and to integrate comparative maps between stone marten and other carnivores with such maps between human and other species. These comparative maps give further insight into genome evolution and karyotype phylogenetic relationships among carnivores, and will facilitate the transfer of gene mapping data from human, domestic dog and cat to other species. PMID:22086079

  15. Development of a Prototype Automated Sorting System for Plastic Recycling

    Directory of Open Access Journals (Sweden)

    D. A. Wahab

    2006-01-01

    Full Text Available Automated sorting for plastic recyclables has been seen as the way forward in the plastic recycling industry. Automated sorting provides significant improvements in terms of efficiency and consistency in the sorting process. In the case of macro sorting, which is the most common type of automated sorting, efficiency is determined by the mechanical details of the material handling system as well as the detection system. This paper provides a review on the state of-the-art technologies that have been deployed by some of the recycling facilities abroad. The design and development of a cost effective prototype automated system for sorting plastic recyclables is proposed and discussed.

  16. PhySortR: a fast, flexible tool for sorting phylogenetic trees in R

    Science.gov (United States)

    Stephens, Timothy G.; Bhattacharya, Debashish; Ragan, Mark A.

    2016-01-01

    A frequent bottleneck in interpreting phylogenomic output is the need to screen often thousands of trees for features of interest, particularly robust clades of specific taxa, as evidence of monophyletic relationship and/or reticulated evolution. Here we present PhySortR, a fast, flexible R package for classifying phylogenetic trees. Unlike existing utilities, PhySortR allows for identification of both exclusive and non-exclusive clades uniting the target taxa based on tip labels (i.e., leaves) on a tree, with customisable options to assess clades within the context of the whole tree. Using simulated and empirical datasets, we demonstrate the potential and scalability of PhySortR in analysis of thousands of phylogenetic trees without a priori assumption of tree-rooting, and in yielding readily interpretable trees that unambiguously satisfy the query. PhySortR is a command-line tool that is freely available and easily automatable. PMID:27190724

  17. Smart Sort: Design and Analysis of a Fast, Efficient and Robust Comparison Based Internal Sort Algorithm

    CERN Document Server

    Singh, Niraj Kumar

    2012-01-01

    Smart Sort algorithm is a "smart" fusion of heap construction procedures (of Heap sort algorithm) into the conventional "Partition" function (of Quick sort algorithm) resulting in a robust version of Quick sort algorithm. We have also performed empirical analysis of average case behavior of our proposed algorithm along with the necessary theoretical analysis for best and worst cases. Its performance was checked against some standard probability distributions, both uniform and non-uniform, like Binomial, Poisson, Discrete & Continuous Uniform, Exponential, and Standard Normal. The analysis exhibited the desired robustness coupled with excellent performance of our algorithm. Although this paper assumes the static partition ratios, its dynamic version is expected to yield still better results.

  18. Chimpanzee chromosome 12 is homologous to human chromosome 2q

    Energy Technology Data Exchange (ETDEWEB)

    Sun, N. C.; Sun, C. R.Y.; Ho, T.

    1977-01-01

    Most of the 46 human chromosomes find their counterparts in the 48 chimpanzee chromosomes except for chromosome 2 which has been hypothesized to have been derived from a centric fusion of two chimpanzee acrocentric chromosomes. These two chromosomes correspond to the human chromosomes 2p and 2g. This conclusion is based primarily on chromosome banding techniques, and the somatic cell hybridization technique has also been used. (HLW)

  19. Development of the BAC Physical Maps of Wheat Chromosome 6B for Its Genomic Sequencing

    OpenAIRE

    Kobayashi, A.; Katagiri, S.; Karasawa, W.; Takumi, S.; Doležel, J. (Jaroslav); Ogihara, Y.; Handa, H.

    2015-01-01

    For a purpose of better understanding the genome structure of wheat and accelerating the development of DNA markers for gene isolations and breeding, the Japanese research group, as a member of The International Wheat Genome Sequencing Consortium, is now conducting the physical mapping and genomic sequencing of wheat chromosome 6B of ‘Chinese Spring’ (CS). BAC libraries were constructed respectively using the short and long arm-specific DNAs extracted from the flow-sorted chromosome 6BS and 6...

  20. A mower detector to judge soil sorting

    Energy Technology Data Exchange (ETDEWEB)

    Bramlitt, E.T.; Johnson, N.R. [Thermo Nuclear Services, Inc., Albuquerque, NM (United States)

    1995-12-31

    Thermo Nuclear Services (TNS) has developed a mower detector as an inexpensive and fast means for deciding potential value of soil sorting for cleanup. It is a shielded detector box on wheels pushed over the ground (as a person mows grass) at 30 ft/min with gamma-ray counts recorded every 0.25 sec. It mirror images detection by the TNS transportable sorter system which conveys soil at 30 ft/min and toggles a gate to send soil on separate paths based on counts. The mower detector shows if contamination is variable and suitable for sorting, and by unique calibration sources, it indicates detection sensitivity. The mower detector has been used to characterize some soil at Department of Energy sites in New Jersey and South Carolina.

  1. Gender Sorting at the Application Interface

    OpenAIRE

    Fernandez, Roberto; Friedrich, Colette

    2011-01-01

    We document gender sorting of candidates into gender-typed jobs at the point of initial application to a company. At this step of the hiring process, the firm has implemented a policy whereby organizational screeners’ discretion has been eliminated such that there is no opportunity for contact between hiring agents and applicants. Thus, the job choices studied here offer unique insight as they are uncontaminated by screeners’ steering of candidates toward gender-typed jobs. Eve...

  2. Micro-fluidic chip for cell sorting

    Czech Academy of Sciences Publication Activity Database

    Šerý, Mojmír; Pilát, Zdeněk; Ježek, Jan; Kaňka, Jan; Zemánek, Pavel

    Munich : EOS, 2015. ISBN 978-952-93-5069-8. [EOS Conferences at the World of Photonics Congress 2015. Munich (DE), 22.06.2015-25.06.2015] R&D Projects: GA MŠk(CZ) LD14069; GA MŠk(CZ) LO1212; GA TA ČR TA03010642; GA MŠk ED0017/01/01 Institutional support: RVO:68081731 Keywords : Micro-fluidic chip * cell sorting Subject RIV: BH - Optics, Masers, Lasers

  3. Loudness effect on pairwise comparisons and sorting

    OpenAIRE

    Susini, Patrick; Houix, Olivier; SAINT PIERRE, Guillaume

    2015-01-01

    Effect of loudness on the perceptual structure underlying a corpus of sounds is investigated bytwo experimental methods: pairwise comparisons and sorting. Both methods are applied to a corpus of recordingssounds presented with their ecological, non normalized loudness, and to the same corpus equalized in loudness. Twotypes of perceptual structures (multidimensional scaling and hierarchical cluster analysis) are derived. Domination ofone auditory attribute ? loudness ? on less salient ones is ...

  4. Parallel Algorithms for Neuronal Spike Sorting

    OpenAIRE

    Bergheim, Thomas Stian; Skogvold, Arve Aleksander Nymo

    2011-01-01

    Neurons communicate through electrophysiological signals, which may be recorded using electrodes inserted into living tissue.When a neuron emits a signal, it is referred to as a spike, and an electrode can detect these from multiple neurons.Neuronal spike sorting is the process of classifying the spike activity based on which neuron each spike signal is emitted from.Advances in technology have introduced better recording equipment, which allows the recording of many neurons at the same time.H...

  5. Fluorescence-Activated Nucleolus Sorting in Arabidopsis.

    Science.gov (United States)

    Pontvianne, Frédéric; Boyer-Clavel, Myriam; Sáez-Vásquez, Julio

    2016-01-01

    Nucleolar isolation allows exhaustive characterization of the nucleolar content. Centrifugation-based protocols are not adapted to isolation of nucleoli directly from a plant tissue because of copurification of cellular debris. We describe here a method that allows the purification of nucleoli using fluorescent-activated cell sorting from Arabidopsis thaliana leaves. This approach requires the expression of a specific nucleolar protein such as fibrillarin fused to green fluorescent protein in planta. PMID:27576720

  6. Sorting Network for Reversible Logic Synthesis

    CERN Document Server

    Islam, Md Saiful; Mahmud, Abdullah Al; karim, Muhammad Rezaul

    2010-01-01

    In this paper, we have introduced an algorithm to implement a sorting network for reversible logic synthesis based on swapping bit strings. The algorithm first constructs a network in terms of n*n Toffoli gates read from left to right. The number of gates in the circuit produced by our algorithm is then reduced by template matching and removing useless gates from the network. We have also compared the efficiency of the proposed method with the existing ones.

  7. Optical sorting due to optical binding

    Czech Academy of Sciences Publication Activity Database

    Karásek, Vítězslav; Zemánek, Pavel

    Bellingham: SPIE, 2013, 881027:1-8. ISSN 0277-786X. [Optical Trapping and Optical Micromanipulation /10./. San Diego (US), 25.08.2013-29.08.2013] R&D Projects: GA ČR GPP205/12/P868 Institutional support: RVO:68081731 Keywords : optical binding * optical sorting * particles * optical trapping * bessel beam s * code division multiplexing * numerical simuklations Subject RIV: BH - Optics, Masers, Laser s

  8. A sorting network in bounded arithmetic

    Czech Academy of Sciences Publication Activity Database

    Jeřábek, Emil

    2011-01-01

    Roč. 162, č. 4 (2011), s. 341-355. ISSN 0168-0072 R&D Projects: GA AV ČR IAA1019401; GA MŠk(CZ) 1M0545 Institutional research plan: CEZ:AV0Z10190503 Keywords : bounded arithmetic * sorting network * proof complexity * monotone sequent calculus Subject RIV: BA - General Mathematics Impact factor: 0.450, year: 2011 http://www.sciencedirect.com/science/article/pii/S0168007210001272

  9. Active sorting switch for biological objects

    Czech Academy of Sciences Publication Activity Database

    Šerý, Mojmír; Pilát, Zdeněk; Jonáš, Alexandr; Ježek, Jan; Jákl, Petr; Zemánek, Pavel; Samek, Ota; Nedbal, Ladislav; Trtílek, M.

    Bellingham : SPIE, 2010, 776210: 1-7. ISBN 978-0-8194-8258-7. [Optical Trapping and Optical Micromanipulation /7./. San Diego (US), 01.08.2010] R&D Projects: GA MPO FR-TI1/433; GA MŠk OC08034 Institutional research plan: CEZ:AV0Z20650511; CEZ:AV0Z60870520 Keywords : laser tweezers * laser diode * optical sorting * microfluidics Subject RIV: BH - Optics, Masers, Lasers

  10. How Schwann Cells Sort Axons: New Concepts.

    Science.gov (United States)

    Feltri, M Laura; Poitelon, Yannick; Previtali, Stefano Carlo

    2016-06-01

    Peripheral nerves contain large myelinated and small unmyelinated (Remak) fibers that perform different functions. The choice to myelinate or not is dictated to Schwann cells by the axon itself, based on the amount of neuregulin I-type III exposed on its membrane. Peripheral axons are more important in determining the final myelination fate than central axons, and the implications for this difference in Schwann cells and oligodendrocytes are discussed. Interestingly, this choice is reversible during pathology, accounting for the remarkable plasticity of Schwann cells, and contributing to the regenerative potential of the peripheral nervous system. Radial sorting is the process by which Schwann cells choose larger axons to myelinate during development. This crucial morphogenetic step is a prerequisite for myelination and for differentiation of Remak fibers, and is arrested in human diseases due to mutations in genes coding for extracellular matrix and linkage molecules. In this review we will summarize progresses made in the last years by a flurry of reverse genetic experiments in mice and fish. This work revealed novel molecules that control radial sorting, and contributed unexpected ideas to our understanding of the cellular and molecular mechanisms that control radial sorting of axons. PMID:25686621

  11. Sorting of Lipids and Proteins in Membrane Curvature Gradients

    OpenAIRE

    Tian, A.; Baumgart, T.

    2009-01-01

    The sorting of lipids and proteins in cellular trafficking pathways is a process of central importance in maintaining compartmentalization in eukaryotic cells. However, the mechanisms behind these sorting phenomena are currently far from being understood. Among several mechanistic suggestions, membrane curvature has been invoked as a means to segregate lipids and proteins in cellular sorting centers. To assess this hypothesis, we investigate the sorting of lipid analog dye trace components be...

  12. Categorizing Variations of Student-Implemented Sorting Algorithms

    Science.gov (United States)

    Taherkhani, Ahmad; Korhonen, Ari; Malmi, Lauri

    2012-01-01

    In this study, we examined freshmen students' sorting algorithm implementations in data structures and algorithms' course in two phases: at the beginning of the course before the students received any instruction on sorting algorithms, and after taking a lecture on sorting algorithms. The analysis revealed that many students have insufficient…

  13. Applying Single Kernel Sorting Technology to Developing Scab Resistant Lines

    Science.gov (United States)

    We are using automated single-kernel near-infrared (SKNIR) spectroscopy instrumentation to sort fusarium head blight (FHB) infected kernels from healthy kernels, and to sort segregating populations by hardness to enhance the development of scab resistant hard and soft wheat varieties. We sorted 3 r...

  14. Gender Sorting across K-12 Schools in the United States

    Science.gov (United States)

    Long, Mark C.; Conger, Dylan

    2013-01-01

    This article documents evidence of nonrandom gender sorting across K-12 schools in the United States. The sorting exists among coed schools and at all grade levels, and it is highest in the secondary school grades. We observe some gender sorting across school sectors and types: for instance, males are slightly underrepresented in private schools…

  15. My eSorts and Digital Extensions of Word Study

    Science.gov (United States)

    Zucker, Tricia A.; Invernizzi, Marcia

    2008-01-01

    "My eSorts" is a strategy for helping children learn to read and spell in a socially motivated context. It is based on developmental spelling research and the word study approach to teaching phonics and spelling. "eSorting" employs digital desktop publishing tools that allow children to author their own electronic word sorts and then share these…

  16. Successful low dose insemination of flow cytometrically sorted Sika (Cervus nippon) sperm in Wapiti (Cervus elaphus).

    Science.gov (United States)

    Gao, Q H; Wei, H J; Han, C M; Du, H Z; Zhang, Z G; Zhao, W G; Zhang, Y; Li, S

    2010-03-01

    The purpose of this study was to determine a practical method in Wapiti (Cervus elaphus) of using predetermined sexed Sika (Cervus nippon) semen. Semen was collected by electro-ejaculation from one stag of proven fertility and transported to the laboratory where it was retained as unsorted (control) or was separated into X- and Y-chromosome-bearing sperm using a modified high-speed cell sorter. Wapiti hinds (n=81) were inseminated into the uterus by rectum manipulation with 1 x 10(6) (X1 and Y1 group, respectively) or 2 x 10(6) (X2 and Y2 group, respectively) of sorted frozen-thawed and 1 x 10(7) non-sorted frozen-thawed (a commercial dose control) Sika motile sperm 60-66h after removal of intra-vaginal progesterone-impregnated CIDR devices and administration of 700IU of PMSG at the time of CIDR removal. The percentage of hinds calving after insemination was similar for X1 (38.5%), X2 (41.7%), Y1 (44.4%), Y2 (38.9%) groups (P>0.05), but higher for control (75%) treatment (PSika and Wapiti-hybrid calves produced by Wapiti hinds inseminated with Y-sorted sperm were male (93.7%) and 10/10 (100%) Sika and Wapiti-hybrid calves from hinds inseminated with X-sorted sperm were female. The sex ratio of the Sika and Wapiti-hybrid calves born to hinds inseminated with sex-sorted sperm deviated significantly (PSika and Wapiti-hybrid calves were born between 237 and 250d of gestation. Male and female calves in the control group had similar birth weights and weaning weights as calves from hinds inseminated with X- or Y-sorted sperm. In conclusion it can be said that normal Sika and Wapiti-hybrid calves of predicted sex can be produced after artificial insemination of Wapiti does with low numbers of sex-sorted cryopreserved Sika sperm. PMID:19619965

  17. A Comparison of Card-sorting Analysis Methods

    DEFF Research Database (Denmark)

    Nawaz, Ather

    2012-01-01

    This study investigates how the choice of analysis method for card sorting studies affects the suggested information structure for websites. In the card sorting technique, a variety of methods are used to analyse the resulting data. The analysis of card sorting data helps user experience (UX...... the recurrent patterns found and thus has consequences for the resulting website design. This paper draws an attention to the choice of card sorting analysis and techniques and shows how it impacts the results. The research focuses on how the same data for card sorting can lead to different website structures...

  18. Preparation of sub-genomic fractions enriched for particular chromosomes in polyploid wheat

    Czech Academy of Sciences Publication Activity Database

    Vrána, Jan; Kubaláková, Marie; Čihalíková, Jarmila; Valárik, Miroslav; Doležel, Jaroslav

    2015-01-01

    Roč. 59, č. 3 (2015), s. 445-455. ISSN 0006-3134 R&D Projects: GA MŠk(CZ) LO1204 Institutional support: RVO:61389030 Keywords : chromosome sorting * complexity reduction * genome analysis Subject RIV: EB - Genetics ; Molecular Biology Impact factor: 1.849, year: 2014

  19. New approaches for genome characterization: genomic and chromosome-specific BAC libraries from hexaploid wheat

    Czech Academy of Sciences Publication Activity Database

    Chalhoub, B.; Šafář, Jan; Lefévre, A.; Rouault, P.; Pateyron, S.; Bellec, A.; Janda, Jaroslav; Faivre-Rampant, P.; Doležel, Jaroslav; Caboche, M.

    Califoria, 2003. s. -. [Plant and Animal Genome /11./. 11.01.2003-15.01.2003, San Diego] Institutional research plan: CEZ:AV0Z5038910 Keywords : Triticum aestivum L. * BAC librares * flow-assisted chromosome sorting Subject RIV: EB - Genetics ; Molecular Biology

  20. Sorting N-Elements Using Natural Order: A New Adaptive Sorting Approach

    Directory of Open Access Journals (Sweden)

    Shamim Akhter

    2010-01-01

    Full Text Available Problem statement: Researchers focused their attention on optimally adaptive sorting algorithm and illustrated a need to develop tools for constructing adaptive algorithms for large classes of measures. In adaptive sorting algorithm the run time for n input data smoothly varies from O(n to O(nlogn, with respect to several measures of disorder. Questions were raised whether any approach or technique would reduce the run time of adaptive sorting algorithm and provide an easier way of implementation for practical applications. Approach: The objective of this study is to present a new method on natural sorting algorithm with a run time for n input data O(n to O(nlogm, where m defines a positive value and surrounded by 50% of n. In our method, a single pass over the inputted data creates some blocks of data or buffers according to their natural sequential order and the order can be in ascending or descending. Afterward, a bottom up approach is applied to merge the naturally sorted subsequences or buffers. Additionally, a parallel merging technique is successfully aggregated in our proposed algorithm. Results: Experiments are provided to establish the best, worst and average case runtime behavior of the proposed method. The simulation statistics provide same harmony with the theoretical calculation and proof the method efficiency. Conclusion: The results indicated that our method uses less time as well as acceptable memory to sort a data sequence considering the natural order behavior and applicable to the realistic researches. The parallel implementation can make the algorithm for efficient in time domain and will be the future research issue.

  1. Online sorting of recovered wood waste by automated XRF-technology: part II. Sorting efficiencies.

    Science.gov (United States)

    Hasan, A Rasem; Solo-Gabriele, Helena; Townsend, Timothy

    2011-04-01

    Sorting of waste wood is an important process practiced at recycling facilities in order to detect and divert contaminants from recycled wood products. Contaminants of concern include arsenic, chromium and copper found in chemically preserved wood. The objective of this research was to evaluate the sorting efficiencies of both treated and untreated parts of the wood waste stream, and metal (As, Cr and Cu) mass recoveries by the use of automated X-ray fluorescence (XRF) systems. A full-scale system was used for experimentation. This unit consisted of an XRF-detection chamber mounted on the top of a conveyor and a pneumatic slide-way diverter which sorted wood into presumed treated and presumed untreated piles. A randomized block design was used to evaluate the operational conveyance parameters of the system, including wood feed rate and conveyor belt speed. Results indicated that online sorting efficiencies of waste wood by XRF technology were high based on number and weight of pieces (70-87% and 75-92% for treated wood and 66-97% and 68-96% for untreated wood, respectively). These sorting efficiencies achieved mass recovery for metals of 81-99% for As, 75-95% for Cu and 82-99% of Cr. The incorrect sorting of wood was attributed almost equally to deficiencies in the detection and conveyance/diversion systems. Even with its deficiencies, the system was capable of producing a recyclable portion that met residential soil quality levels established for Florida, for an infeed that contained 5% of treated wood. PMID:21194917

  2. Stochastic Models of Vesicular Sorting in Cellular Organelles

    CERN Document Server

    Vagne, Quentin

    2016-01-01

    The proper sorting of membrane components by regulated exchange between cellular organelles is crucial to intra-cellular organization. This process relies on the budding and fusion of transport vesicles, and should be strongly influenced by stochastic fluctuations considering the relatively small size of many organelles. We identify the perfect sorting of two membrane components initially mixed in a single compartment as a first passage process, and we show that the mean sorting time exhibits two distinct regimes as a function of the ratio of vesicle fusion to budding rates. Low ratio values leads to fast sorting, but results in a broad size distribution of sorted compartments dominated by small entities. High ratio values result in two well defined sorted compartments but is exponentially slow. Our results suggests an optimal balance between vesicle budding and fusion for the rapid and efficient sorting of membrane components, and highlight the importance of stochastic effects for the steady-state organizati...

  3. Plant sex chromosome evolution.

    Science.gov (United States)

    Charlesworth, Deborah

    2013-01-01

    It is now well established that plants have an important place in studies of sex chromosome evolution because of the repeated independent evolution of separate sexes and sex chromosomes. There has been considerable recent progress in studying plant sex chromosomes. In this review, I focus on how these recent studies have helped clarify or answer several important questions about sex chromosome evolution, and I shall also try to clarify some common misconceptions. I also outline future work that will be needed to make further progress, including testing some important ideas by genetic, molecular, and developmental approaches. Systems with different ages can clearly help show the time course of events during changes from an ancestral co-sexual state (hermaphroditism or monoecy), and I will also explain how different questions can be studied in lineages whose dioecy or sex chromosomes evolved at different times in the past. PMID:23125359

  4. Multidimensional Skills, Sorting, and Human Capital Accumulation

    OpenAIRE

    Fabien Postel-Vinay; Jeremy Lise

    2015-01-01

    We construct a structural model of on-the-job search in which workers differ in skills along several dimensions (cognitive, manual, interpersonal) and sort themselves into jobs with heterogeneous skill requirements along those same dimensions. We further allow for skills to be accumulated when used, and eroded away when not used. We estimate the model using occupation-level measures of skill requirements based on O*NET data, combined with a worker-level panel from the NLSY79. We use the estim...

  5. Lateral chirality-sorting optical forces

    Science.gov (United States)

    Hayat, Amaury; Mueller, J. P. Balthasar; Capasso, Federico

    2015-01-01

    The transverse component of the spin angular momentum of evanescent waves gives rise to lateral optical forces on chiral particles, which have the unusual property of acting in a direction in which there is neither a field gradient nor wave propagation. Because their direction and strength depends on the chiral polarizability of the particle, they act as chirality-sorting and may offer a mechanism for passive chirality spectroscopy. The absolute strength of the forces also substantially exceeds that of other recently predicted sideways optical forces. PMID:26453555

  6. Vibrio chromosomes share common history

    OpenAIRE

    Gevers Dirk; Chang Sarah; Chang LeeAnn; Kirkup Benjamin C; Polz Martin F

    2010-01-01

    Abstract Background While most gamma proteobacteria have a single circular chromosome, Vibrionales have two circular chromosomes. Horizontal gene transfer is common among Vibrios, and in light of this genetic mobility, it is an open question to what extent the two chromosomes themselves share a common history since their formation. Results Single copy genes from each chromosome (142 genes from chromosome I and 42 genes from chromosome II) were identified from 19 sequenced Vibrionales genomes ...

  7. Sorting waste - A question of good will

    CERN Multimedia

    TS Department - FM Group

    2006-01-01

    In order to minimise waste-sorting costs, CERN provides two types of container at the entrance of buildings: a green plastic container for paper/cardboard and a metal container for household-type waste. We regret that recently there has been a significant decrease in the extent to which these types of waste are sorted, for example green containers have been found to hold assorted waste such as cardboard boxes filled with polystyrene, bubble-wrap or even plastic bottles, yoghurt pots, etc. Checks have shown that this 'non-compliant' waste does not come from the rubbish bins emptied by the cleaners but is deposited there directly by inconsiderate users. During the months of October and November alone, for example, only 15% of the waste from the paper/cardboard containers was recycled and the remaining 85% had to be incinerated, which entails a high cost for CERN. You should note that once an item of non-compliant waste is found in a green container its contents are immediately sent as waste to be incinerated ...

  8. Coupling amplified DNA from flow-sorted chromosomes to high-density SNP mapping in barley

    Czech Academy of Sciences Publication Activity Database

    Šimková, Hana; Svensson, J.T.; Condamine, P.; Hřibová, Eva; Suchánková, Pavla; Bhat, P.R.; Bartoš, Jan; Šafář, Jan; Close, T.J.; Doležel, Jaroslav

    2008-01-01

    Roč. 9, č. 294 (2008), s. 1-9. ISSN 1471-2164 R&D Projects: GA ČR GD521/05/H013; GA MŠk ME 884; GA MŠk(CZ) LC06004 Institutional research plan: CEZ:AV0Z50380511 Keywords : Flow cytometry * DNA amplification * Hordeum vulgare L. Subject RIV: EB - Genetics ; Molecular Biology Impact factor: 3.926, year: 2008

  9. Chromosome flow-sorting and integration of genetic and physical maps in pea

    Czech Academy of Sciences Publication Activity Database

    Neumann, Pavel; Požárková, Dana; Vrána, Jan; Doležel, Jaroslav; Macas, Jiří

    2001-01-01

    Roč. 9, Suppl.1 (2001), s. 98. ISSN 0967-3849 Institutional research plan: CEZ:AV0Z5051902 Keywords : plants * genetics Subject RIV: EB - Genetics ; Molecular Biology Impact factor: 1.835, year: 2001

  10. Sequential cloning of chromosomes

    Energy Technology Data Exchange (ETDEWEB)

    Lacks, S.A.

    1991-12-31

    A method for sequential cloning of chromosomal DNA and chromosomal DNA cloned by this method are disclosed. The method includes the selection of a target organism having a segment of chromosomal DNA to be sequentially cloned. A first DNA segment, having a first restriction enzyme site on either side. homologous to the chromosomal DNA to be sequentially cloned is isolated. A first vector product is formed by ligating the homologous segment into a suitably designed vector. The first vector product is circularly integrated into the target organism`s chromosomal DNA. The resulting integrated chromosomal DNA segment includes the homologous DNA segment at either end of the integrated vector segment. The integrated chromosomal DNA is cleaved with a second restriction enzyme and ligated to form a vector-containing plasmid, which is replicated in a host organism. The replicated plasmid is then cleaved with the first restriction enzyme. Next, a DNA segment containing the vector and a segment of DNA homologous to a distal portion of the previously isolated DNA segment is isolated. This segment is then ligated to form a plasmid which is replicated within a suitable host. This plasmid is then circularly integrated into the target chromosomal DNA. The chromosomal DNA containing the circularly integrated vector is treated with a third, retrorestriction enzyme. The cleaved DNA is ligated to give a plasmid that is used to transform a host permissive for replication of its vector. The sequential cloning process continues by repeated cycles of circular integration and excision. The excision is carried out alternately with the second and third enzymes.

  11. A new chromosome was born: comparative chromosome painting in Boechera.

    Science.gov (United States)

    Koch, Marcus A

    2015-09-01

    Comparative chromosome painting is a powerful tool to study the evolution of chromosomes and genomes. Analyzing karyotype evolution in cruciferous plants highlights the origin of aberrant chromosomes in apomictic Boechera and further establishes the cruciferous plants as important model system for our understanding of plant chromosome and genome evolution. PMID:26228436

  12. Sorting during Migration of Aeolian Megaripples

    Science.gov (United States)

    Sullivan, R. J., Jr.; Zimbelman, J. R.

    2014-12-01

    Aeolian sediments commonly are well sorted. However, aeolian megaripples (aka coarse-grained ripples or granule ripples) have bimodal grain size-frequencies. Distinguishing aeolian megaripple deposits from mixed grain size fluvial deposits is important, particularly for martian sedimentary rocks where implications for flowing water in the martian past (if revealed by legitimate fluvial deposits) are important mission drivers for rovers and landers. Aeolian megaripples are relatively minor components of terrestrial aeolian settings (e.g., as interdune features), but on Mars, megaripples have been encountered in many locations by landers and rovers, are durable due to indurated, armoring surface layers of very coarse sand, and therefore are likely candidates for preservation in the martian sedimentary rock record. Unfortunately, megaripple deposits preserved in martian sedimentary rocks must be recognized with much less data or context than obtained typically during terrestrial fieldwork. We have undertaken wind tunnel experiments and fieldwork to assist interpretations distinguishing aeolian megaripple deposits from mixed grain fluvial materials. Lags of coarse or very coarse sand from ancient aeolian environments within the White Rim Sandstone, Canyonlands NP, UT, and at some localities along the J2 Unconformity at Buckhorn Wash, UT, are well sorted, with a sharply defined maximum grain size in each case. We conducted wind tunnel experiments to explore whether the well-sorted, sharp cutoff in maximum grain size of the coarse fraction in these deposits could be diagnostic of aeolian megaripple formation and migration. Wind tunnel experiments involved 250 μm sand saltating against 600-2800 μm grains. For a given wind tunnel speed, only a narrow grain size range appeared on megaripple surfaces as these bedforms developed spontaneously from the bed; somewhat finer grains migrated rapidly downwind, while slightly coarser grains remained immobile. The physics of

  13. Faster Radix Sort via Virtual Memory and Write-Combining

    CERN Document Server

    Wassenberg, Jan

    2010-01-01

    Sorting algorithms are the deciding factor for the performance of common operations such as removal of duplicates or database sort-merge joins. This work focuses on 32-bit integer keys, optionally paired with a 32-bit value. We present a fast radix sorting algorithm that builds upon a microarchitecture-aware variant of counting sort. Taking advantage of virtual memory and making use of write-combining yields a per-pass throughput corresponding to at least 88 % of the system's peak memory bandwidth. Our implementation outperforms Intel's recently published radix sort by a factor of 1.5. It also compares favorably to the reported performance of an algorithm for Fermi GPUs when data-transfer overhead is included. These results indicate that scalar, bandwidth-sensitive sorting algorithms remain competitive on current architectures. Various other memory-intensive applications can benefit from the techniques described herein.

  14. Chimpanzee chromosome 13 is homologous to human chromosome 2p

    Energy Technology Data Exchange (ETDEWEB)

    Sun, N. C.; Sun, C. R.Y.; Ho, T.

    1977-01-01

    Similarities between human and chimpanzee chromosomes are shown by chromosome banding techniques and somatic cell hybridization techniques. Cell hybrids were obtained from the chimpanzee lymphocyte LE-7, and the Chinese hamster mutant cell, Gal-2. Experiments showed that the ACPL, MDHs, and Gal-Act genes could be assigned to chimpanzee chromosome 13, and since these genes have been assigned to human chromosme 2p, it is suggested that chimpanzee chromosome 13 is homologous to human chromosome 2p. (HLW)

  15. Chromosome condensation and segmentation

    International Nuclear Information System (INIS)

    Some aspects of chromosome condensation in mammalians -humans especially- were studied by means of cytogenetic techniques of chromosome banding. Two further approaches were adopted: a study of normal condensation as early as prophase, and an analysis of chromosome segmentation induced by physical (temperature and γ-rays) or chemical agents (base analogues, antibiotics, ...) in order to show out the factors liable to affect condensation. Here 'segmentation' means an abnormal chromosome condensation appearing systematically and being reproducible. The study of normal condensation was made possible by the development of a technique based on cell synchronization by thymidine and giving prophasic and prometaphasic cells. Besides, the possibility of inducing R-banding segmentations on these cells by BrdU (5-bromodeoxyuridine) allowed a much finer analysis of karyotypes. Another technique was developed using 5-ACR (5-azacytidine), it allowed to induce a segmentation similar to the one obtained using BrdU and identify heterochromatic areas rich in G-C bases pairs

  16. Chromosomal abnormalities and autism

    Directory of Open Access Journals (Sweden)

    Farida El-Baz

    2016-01-01

    Conclusion: Chromosomal abnormalities were not detected in the studied autistic children, and so the relation between the genetics and autism still needs further work up with different study methods and techniques.

  17. Preferences and Choice Constraints in Marital Sorting: Evidence From Korea

    OpenAIRE

    Soohyung Lee

    2008-01-01

    Marital sorting along education, income and other salient dimensions is well-documented for many countries. The degree of marital sorting may influence income inequality, intergenerational mobility, and household labor supply, and other economic outcomes. Marital sorting is thought to arise from some combination of people’s preferences and constraints on their choice sets. However, separating these two causes is difficult because typical data sets provide information on either a person’s spou...

  18. Sort sourceof pea in Ukraine and in the world

    OpenAIRE

    ШЕВЧЕНКО А.М.

    2006-01-01

    The sorts different by economic-biologic character of unshed seed, breeded in Ukraine and abroad obtained wide spreading in production. Expediency using lugansky or samarsky type of determinant stability to healthy growth. Breeding sorts with tendril type of leaf give the positive results in increase stability of the plants to damping-off. The sorts combining named recessive character with another aconomic-value traits of grain pea made and suggested to production.

  19. Statistical Characteristics of Single Sort of Grape Bulgarian Wines

    Science.gov (United States)

    Boyadzhiev, D.

    2008-10-01

    The aim of this paper is to evaluate the differences in the values of the 8 basic physicochemical indices of single sort of grape Bulgarian wines (white and red ones), obligatory for the standardization of ready production in the winery. Statistically significant differences in the values of various sorts and vintages are established and possibilities for identifying the sort and the vintage on the base of these indices by applying discriminant analysis are discussed.

  20. Direct send compositing for parallel sort-last rendering

    OpenAIRE

    Eilemann, S; Pajarola, R.

    2007-01-01

    In contrast to sort-first, sort-last parallel rendering has the distinct advantage that the task division for parallel geometry processing and rasterization is simple, and can easily be incorporated into most visualization systems. However, the efficient final depth-compositing for polygonal data, or alpha-blending for volume data of partial rendering results is the key to achieve scalability in sort-last parallel rendering. In this paper, we demonstrate the efficiency as well as ...

  1. Radiometric sorting of Rio Algom uranium ore

    International Nuclear Information System (INIS)

    An ore sample of about 0.2 percent uranium from Quirke Mine was subjected to radiometric sorting by Ore Sorters Limited. Approximately 60 percent of the sample weight fell within the sortable size range: -150 + 25 mm. Rejects of low uranium content (2 (2 counts/in2) but only 7.6 percent of the ore, by weight, was discarded. At 0.8-0.9 counts/cm2 (5-6 counts/in2) a significant amount of rejects was removed (> 25 percent) but the uranium loss was unacceptably high (7.7 percent). Continuation of the testwork to improve the results is proposed by trying to extend the sortable size range and to reduce the amount of fines during crushing

  2. Utjecaj sorte jabuke na kvalitetu suhog proizvoda

    OpenAIRE

    Dobričević, Nadica; Voća, Sandra; Pliestić, Stjepan; Magdić, D.

    2008-01-01

    Sorte jabuka Gloster, Jonagold, Idared, Melrose i Mutsu s pro-izvodnog područja sjeverozapadne Hrvatske ubrane su u tehnološkoj zriobi i skladištene u rashladnom prostoru na prosječnoj temperaturi od 2,0 oC i relativnoj vlazi zraka od 98% do užitne dospjelosti. Plodovi jabuka namijenjeni za sušenje očišćeni su i rezani na kockice veličine 1x1x1 cm. Količina mesa u analiziranim sortama je 63,37-75,46 %, količina kožica je 9,11-12,85 %, količina sjemene lože je 10,82-20,34 % i količina neupo...

  3. Passive chip-based droplet sorting

    Science.gov (United States)

    Beer, Neil Reginald; Lee, Abraham P; Hatch, Andrew C; Fisher, Jeffrey S

    2015-03-03

    An apparatus for passive sorting of microdroplets including a main flow channel, a flow stream of microdroplets in the main flow channel wherein the microdroplets have substantially the same diameter and wherein the flow stream of microdroplets includes first microdroplets having a first degree of stiffness and second microdroplets having a second degree of stiffness wherein the second degree of stiffness is different than the first degree of stiffness. A second flow channel is connected to the main flow channel for the second microdroplets having a second degree of stiffness. A separator separates the second microdroplets having a second degree of stiffness from the first microdroplets and directs the second microdroplets having a second degree of stiffness into the second flow channel.

  4. Passive chip-based droplet sorting

    Energy Technology Data Exchange (ETDEWEB)

    Beer, Neil Reginald; Lee, Abraham P; Hatch, Andrew C; Fisher, Jeffrey S

    2015-11-05

    An apparatus for passive sorting of microdroplets including a main flow channel, a flow stream of microdroplets in the main flow channel wherein the microdroplets have substantially the same diameter and wherein the flow stream of microdroplets includes first microdroplets having a first degree of stiffness and second microdroplets having a second degree of stiffness wherein the second degree of stiffness is different than the first degree of stiffness. A second flow channel is connected to the main flow channel for the second microdroplets having a second degree of stiffness. A separator separates the second microdroplets having a second degree of stiffness from the first microdroplets and directs the second microdroplets having a second degree of stiffness into the second flow channel.

  5. Machine-vision based optofluidic cell sorting

    DEFF Research Database (Denmark)

    Glückstad, Jesper; Bañas, Andrew

    available light and creating 2D or 3D beam distributions aimed at the positions of the detected cells. Furthermore, the beam shaping freedom provided by GPC can allow optimizations in the beam’s propagation and its interaction with the laser catapulted and sorted cells....... machine vision1. This approach is gentler, less invasive and more economical compared to conventional FACS-systems. As cells are less responsive to plastic or glass objects commonly used in the optical manipulation literature2, and since laser safety would be an issue in clinical use, we develop efficient...... approaches in utilizing lasers and light modulation devices. The Generalized Phase Contrast (GPC) method3-9 that can be used for efficiently illuminating spatial light modulators10 or creating well-defined contiguous optical traps11 is supplemented by diffractive techniques capable of integrating the...

  6. Chromosome numbers in Bromeliaceae

    OpenAIRE

    2000-01-01

    The present study reports chromosome numbers of 17 species of Bromeliaceae, belonging to the genera Encholirium, Bromelia, Orthophytum, Hohenbergia, Billbergia, Neoglaziovia, Aechmea, Cryptanthus and Ananas. Most species present 2n = 50, however, Bromelia laciniosa, Orthophytum burle-marxii and O. maracasense are polyploids with 2n = 150, 2n = 100 and 2n = 150, respectively, while for Cryptanthus bahianus, 2n = 34 + 1-4B. B chromosomes were observed in Bromelia plumieri and Hohenbergia aff. u...

  7. Solution structure of human sorting nexin 22.

    Science.gov (United States)

    Song, Jikui; Zhao, Kate Qin; Newman, Carrie L Loushin; Vinarov, Dmitriy A; Markley, John L

    2007-05-01

    The sorting nexins (SNXs) constitute a large group of PX domain-containing proteins that play critical roles in protein trafficking. We report here the solution structure of human sorting nexin 22 (SNX22). Although SNX22 has <30% sequence identity with any PX domain protein of known structure, it was found to contain the alpha/beta fold and compact structural core characteristic of PX domains. Analysis of the backbone dynamics of SNX22 by NMR relaxation measurements revealed that the two walls of the ligand binding cleft undergo internal motions: on the picosecond timescale for the beta1/beta2 loop and on the micro- to millisecond timescale for the loop between the polyproline motif and helix alpha2. Regions of the SNX22 structure that differ from those of other PX domains include the loop connecting strands beta1 and beta2 and the loop connecting helices alpha1 and alpha2, which appear to be more mobile than corresponding loops in other known structures. The interaction of dibutanoyl-phosphatidylinositol-3-phosphate (dibutanoyl-PtdIns(3)P) with SNX22 was investigated by an NMR titration experiment, which identified the binding site in a basic cleft and indicated that ligand binding leads only to a local structural rearrangement as has been found with other PX domains. Because motions in the loops are damped out when dibutanoyl-PtdIns(3)P binds, entropic effects could contribute to the lower affinity of SNX22 for this ligand compared to other PX domains. PMID:17400918

  8. Learning sorting algorithms through visualization construction

    Science.gov (United States)

    Cetin, Ibrahim; Andrews-Larson, Christine

    2016-01-01

    Recent increased interest in computational thinking poses an important question to researchers: What are the best ways to teach fundamental computing concepts to students? Visualization is suggested as one way of supporting student learning. This mixed-method study aimed to (i) examine the effect of instruction in which students constructed visualizations on students' programming achievement and students' attitudes toward computer programming, and (ii) explore how this kind of instruction supports students' learning according to their self-reported experiences in the course. The study was conducted with 58 pre-service teachers who were enrolled in their second programming class. They expect to teach information technology and computing-related courses at the primary and secondary levels. An embedded experimental model was utilized as a research design. Students in the experimental group were given instruction that required students to construct visualizations related to sorting, whereas students in the control group viewed pre-made visualizations. After the instructional intervention, eight students from each group were selected for semi-structured interviews. The results showed that the intervention based on visualization construction resulted in significantly better acquisition of sorting concepts. However, there was no significant difference between the groups with respect to students' attitudes toward computer programming. Qualitative data analysis indicated that students in the experimental group constructed necessary abstractions through their engagement in visualization construction activities. The authors of this study argue that the students' active engagement in the visualization construction activities explains only one side of students' success. The other side can be explained through the instructional approach, constructionism in this case, used to design instruction. The conclusions and implications of this study can be used by researchers and

  9. The influence of caches on the performance of sorting

    Energy Technology Data Exchange (ETDEWEB)

    LaMarca, A.; Ladner, R.E. [Univ. of Washington, Seattle, WA (United States)

    1997-06-01

    We investigate the effect that caches have on the performance of sorting algorithms both experimentally and analytically. To address the performance problems that high cache miss penalties introduce we restructure heapsort, mergesort and quicksort in order to improve their cache locality. For all three algorithms the improvement in cache performance leads to a reduction in total execution time. We also investigate the performance of radix sort. Despite the extremely low instruction count incurred by this linear sorting algorithm, its relatively poor cache performance results in worse overall performance than the efficient comparison based sorting algorithms.

  10. A many-sorted calculus based on resolution and paramodulation

    CERN Document Server

    Walther, Christoph

    1987-01-01

    A Many-Sorted Calculus Based on Resolution and Paramodulation emphasizes the utilization of advantages and concepts of many-sorted logic for resolution and paramodulation based automated theorem proving.This book considers some first-order calculus that defines how theorems from given hypotheses by pure syntactic reasoning are obtained, shifting all the semantic and implicit argumentation to the syntactic and explicit level of formal first-order reasoning. This text discusses the efficiency of many-sorted reasoning, formal preliminaries for the RP- and ?RP-calculus, and many-sorted term rewrit

  11. Parallel particle identification and separation for active optical sorting

    DEFF Research Database (Denmark)

    Perch-Nielsen, Ivan R.; Palima, Darwin; Dam, Jeppe Seidelin; Glückstad, Jesper

    2009-01-01

    An instrument for rapidly and non-invasively sorting different cell specimens is a valuable tool in biological and medical research. Parallel identification of target specimens through image analysis can sort based on highly tuneable selection criteria and can enable high-speed optical sorting when...... matched with a rapidly reconfigurable optical sorting field. We demonstrate the potential of such a system using colloidal polystyrene microspheres. By combining machine vision with a parallel add-on optical manipulation scheme, we were able to move identified particles over a distance of several hundred...

  12. A Sort-Last Rendering System over an Optical Backplane

    OpenAIRE

    Yasuhiro Kirihata; Jason Leigh; Chaoyue Xiong; Tadao Murata

    2005-01-01

    Sort-Last is a computer graphics technique for rendering extremely large data sets on clusters of computers. Sort-Last works by dividing the data set into even-sized chunks for parallel rendering and then composing the images to form the final result. Since sort-last rendering requires the movement of large amounts of image data among cluster nodes, the network interconnecting the nodes becomes a major bottleneck. In this paper, we describe a sort-last rendering system implemented on a cluste...

  13. Pattern matching based active optical sorting of colloids/cells

    International Nuclear Information System (INIS)

    We report active optical sorting of colloids/cells by employing a cross correlation based pattern matching technique for selection of the desired objects and thereafter sorting using dynamically controllable holographic optical traps. The problem of possible collision between the different sets of objects during sorting was avoided by raising one set of particles to a different plane. We also present the results obtained on using this approach for some representative applications such as sorting of silica particles of two different sizes, of closely packed colloids and of white blood cells and red blood cells from a mixture of the two. (paper)

  14. Micromechanics of human mitotic chromosomes

    International Nuclear Information System (INIS)

    Eukaryote cells dramatically reorganize their long chromosomal DNAs to facilitate their physical segregation during mitosis. The internal organization of folded mitotic chromosomes remains a basic mystery of cell biology; its understanding would likely shed light on how chromosomes are separated from one another as well as into chromosome structure between cell divisions. We report biophysical experiments on single mitotic chromosomes from human cells, where we combine micromanipulation, nano-Newton-scale force measurement and biochemical treatments to study chromosome connectivity and topology. Results are in accord with previous experiments on amphibian chromosomes and support the 'chromatin network' model of mitotic chromosome structure. Prospects for studies of chromosome-organizing proteins using siRNA expression knockdowns, as well as for differential studies of chromosomes with and without mutations associated with genetic diseases, are also discussed

  15. Vibrio chromosomes share common history

    Directory of Open Access Journals (Sweden)

    Gevers Dirk

    2010-05-01

    Full Text Available Abstract Background While most gamma proteobacteria have a single circular chromosome, Vibrionales have two circular chromosomes. Horizontal gene transfer is common among Vibrios, and in light of this genetic mobility, it is an open question to what extent the two chromosomes themselves share a common history since their formation. Results Single copy genes from each chromosome (142 genes from chromosome I and 42 genes from chromosome II were identified from 19 sequenced Vibrionales genomes and their phylogenetic comparison suggests consistent phylogenies for each chromosome. Additionally, study of the gene organization and phylogeny of the respective origins of replication confirmed the shared history. Conclusions Thus, while elements within the chromosomes may have experienced significant genetic mobility, the backbones share a common history. This allows conclusions based on multilocus sequence analysis (MLSA for one chromosome to be applied equally to both chromosomes.

  16. SORT:Ed - An Interactive Educational Game for HealthCare Students

    OpenAIRE

    Currell, Karen

    2011-01-01

    This short paper outlines an academic’s entrepreneurial journey from idea conception to the market place. Sort Ed is an interactive board game designed for paediatric student nurses and it set in a child’s ward. There is a huge market demand for this type of educational games in the UK especially by institutions that run healthcare management courses. This learning tool is a major contribution to the limited number of interactive educational games currently available to healthcare tutors and ...

  17. An analytical comparison of the information in sorted and non-sorted cosine-tuned spike activity

    Science.gov (United States)

    Won, D. S.; Tiesinga, P. H. E.; Henriquez, C. S.; Wolf, P. D.

    2007-09-01

    Spike sorting is a technologically expensive component of the signal processing chain required to interpret population spike activity acquired in a neuromotor prosthesis. No systematic analysis of the value of spike sorting has been carried out, and little is known about the effects of spike sorting error on the ability of a brain-machine interface (BMI) to decode intended motor commands. We developed a theoretical framework to examine the effects of spike processing on the information available to a BMI decoder. We computed the mutual information in neural activity in a simplified model of directional cosine tuning to compare the effects of pooling activity from up to four neurons to the effects of sorting with varying amounts of spike error. The results showed that information in a small population of cosine-tuned neurons is maximized when the responses are sorted and there is diverse tuning of units, but information was affected little when pooling units with similar preferred directions. Spike error had adverse effects on information, such that non-sorted population activity had 79-92% of the information in its sorted counterpart for reasonable amounts of detection and sorting error and for units with moderate differences in preferred direction. This quantification of information loss associated with pooling units and with spike detection and sorting error will help to guide the engineering decisions in designing a BMI spike processing system.

  18. Chromosomal evolution in Gekkonidae. I. Chromosome painting between Gekko and Hemidactylus species reveals phylogenetic relationships within the group.

    Science.gov (United States)

    Trifonov, Vladimir A; Giovannotti, Massimo; O'Brien, Patricia C M; Wallduck, Margaret; Lovell, Frances; Rens, Willem; Parise-Maltempi, Patricia P; Caputo, Vincenzo; Ferguson-Smith, Malcolm A

    2011-10-01

    Geckos are a large group of lizards characterized by a rich variety of species, different modes of sex determination and diverse karyotypes. In spite of many unresolved questions on lizards' phylogeny and taxonomy, the karyotypes of most geckos have been studied by conventional cytogenetic methods only. We used flow-sorted chromosome-specific painting probes of Japanese gecko (Gekko japonicus), Mediterranean house gecko (Hemidactylus turcicus) and flat-tailed house gecko (Hemidactylus platyurus) to reveal homologous regions and to study karyotype evolution in seven gecko species (Gekko gecko, G. japonicus, G. ulikovskii, G. vittatus, Hemidactylus frenatus, H. platyurus and H. turcicus). Generally, the karyotypes of geckos were found to be conserved, but we revealed some characteristic rearrangements including both fissions and fusions in Hemidactylus. The karyotype of H. platyurus contained a heteromorphic pair in all female individuals, where one of the homologues had a terminal DAPI-negative and C-positive heterochromatic block that might indicate a putative sex chromosome. Among two male individuals studied, only one carried such a polymorphism, and the second one had none, suggesting a possible ZZ/ZW sex determination in some populations of this species. We found that all Gekko species have retained the putative ancestral karyotype, whilst the fission of the largest ancestral chromosome occurred in the ancestor of modern Hemidactylus species. Three common fissions occurred in the ancestor of Mediterranean house and flat-tailed house geckos, suggesting their sister group relationships. PCR-assisted mapping on flow-sorted chromosome libraries with conserved DMRT1 gene primers in G. japonicus indicates the localization of DMRT1 gene on chromosome 6. PMID:21987185

  19. Tradeoffs Between Branch Mispredictions and Comparisons for Sorting Algorithms

    DEFF Research Database (Denmark)

    Brodal, Gerth Stølting; Moruz, Gabriel

    ) comparisons performs Omega(nlogd n) branch mispredictions. We show that Multiway MergeSort achieves this tradeoff by adopting a multiway merger with a low number of branch mispredictions. For adaptive sorting algorithms we similarly obtain that an algorithm performing O(dn(1+log (1+Inv/n))) comparisons must...

  20. Magnetic fluid equipment for sorting of secondary polyolefins from waste

    NARCIS (Netherlands)

    Rem, P.C.; Di Maio, F.; Hu, B.; Houzeaux, G...; Baltes, L.; Tierean, M.

    2012-01-01

    The paper presents the researches made on the FP7 project „Magnetic Sorting and Ultrasound Sensor Technologies for Production of High Purity Secondary Polyolefins from Waste” in order to develop a magnetic fluid equipment for sorting of polypropylene (PP) and polyethylene (PE) from polymers mixed wa

  1. NEW TOBACCO SORTS POTENTIAL FOR TOBACCO INDUSTRY DEVELOPMENT

    Directory of Open Access Journals (Sweden)

    Homutova S. A.

    2014-10-01

    Full Text Available The review of the latest tobacco selection researches is given in the article. The basic aim of these researches is creation of new sort material, which is ecologically stable, and corresponding to energy conservation demands. New tobacco sorts are presented

  2. Supramolecular fibres: Self-sorting shows its true colours

    Science.gov (United States)

    Draper, Emily R.; Adams, Dave J.

    2016-08-01

    Self-sorting events in supramolecular assembly lead to complex systems that are attractive for the design of functional materials, but have remained difficult to understand and control. Now, the growth of self-sorted supramolecular nanofibres has been elucidated by direct imaging through real-time in situ confocal microscopy.

  3. The Use of Binary Search Trees in External Distribution Sorting.

    Science.gov (United States)

    Cooper, David; Lynch, Michael F.

    1984-01-01

    Suggests new method of external distribution called tree partitioning that involves use of binary tree to split incoming file into successively smaller partitions for internal sorting. Number of disc accesses during a tree-partitioning sort were calculated in simulation using files extracted from British National Bibliography catalog files. (19…

  4. The PreferenSort: A Holistic Instrument for Career Counseling

    Science.gov (United States)

    Amit, Adi; Sagiv, Lilach

    2013-01-01

    We present the PreferenSort, a career counseling instrument that derives counselees' vocational interests from their preferences among occupational titles. The PreferenSort allows for a holistic decision process, while taking into account the full complexity of occupations and encouraging deliberation about one's preferences and…

  5. Cache-Aware and Cache-Oblivious Adaptive Sorting

    DEFF Research Database (Denmark)

    Brodal, Gerth Stølting; Fagerberg, Rolf; Moruz, Gabriel

    2005-01-01

    Two new adaptive sorting algorithms are introduced which perform an optimal number of comparisons with respect to the number of inversions in the input. The first algorithm is based on a new linear time reduction to (non-adaptive) sorting. The second algorithm is based on a new division protocol ...

  6. A FORTRAN Computer Program for Q Sort Calculations

    Science.gov (United States)

    Dunlap, William R.

    1978-01-01

    The Q Sort method is a rank order procedure. A FORTRAN program is described which calculates a total value for any group of cases for the items in the Q Sort, and rank orders the items according to this composite value. (Author/JKS)

  7. Processes of Overall Similarity Sorting in Free Classification

    Science.gov (United States)

    Milton, Fraser; Longmore, Christopher A.; Wills, A. J.

    2008-01-01

    The processes of overall similarity sorting were investigated in 5 free classification experiments. Experiments 1 and 2 demonstrated that increasing time pressure can reduce the likelihood of overall similarity categorization. Experiment 3 showed that a concurrent load also reduced overall similarity sorting. These findings suggest that overall…

  8. Multiple pathways for vacuolar sorting of yeast proteinase A

    DEFF Research Database (Denmark)

    Westphal, V; Marcusson, E G; Winther, Jakob R.; Emr, S D; van den Hazel, H B

    1996-01-01

    The sorting of the yeast proteases proteinase A and carboxypeptidase Y to the vacuole is a saturable, receptor-mediated process. Information sufficient for vacuolar sorting of the normally secreted protein invertase has in fusion constructs previously been found to reside in the propeptide of...

  9. Multiphase ferrofluid flows for micro-particle sorting

    Science.gov (United States)

    Zhou, Ran; Wang, Cheng

    2015-11-01

    Utilizing negative magnetophoresis, ferrofluids have demonstrated great potential for sorting nonmagnetic micro-particles by size. Most of the existing techniques use single phase ferrofluids by pushing micro-particles to channel walls; the sorting speed is thus hindered. We demonstrate a novel sorting strategy by co-flowing a ferrofluid and a non-magnetic fluid in microchannels. Due to the magnetic force, the particles migrate across the ferrofluid stream at size-dependent velocities as they travel downstream. The laminar interface between the two fluids functions as a virtual boundary to accumulate particles, resulting in effective separation of particles. A stable and sharp interface is important to the success of this sorting technique. We investigate several factors that affect sorting efficiency, including magnetic field, susceptibility difference of the fluids, flow velocity, and channel geometry.

  10. Efficient External Sorting on Flash Memory Embedded Devices

    Directory of Open Access Journals (Sweden)

    Tyler Cossentine

    2013-03-01

    Full Text Available Many embedded system applications involve storing and querying large datasets. Existing research in thisarea has focused on adapting and applying conventional database algorithms to embedded devices.Algorithms designed for processing queries on embedded devices must be able to execute given the smallamount of available memory and energy constraints. Most embedded devices use flash memory to storelarge amounts of data. Flash memory has unique performance characteristics that can be exploited toimprove algorithm performance. In this paper, we describe the Flash MinSort external sorting algorithmthat uses an index, generated at runtime, to take advantage of fast random reads in flash memory. Thisalgorithm adapts to the amount of memory available and performs best in applications where sort keys areclustered. Experimental results show that Flash MinSort is two to ten times faster than previousapproaches for small memory sizes where external merge sort is not executable.

  11. Help the planet by sorting your waste!

    CERN Multimedia

    2012-01-01

    Paper and cardboard waste comes in various forms, from newspapers to the toughest cardboard. Every year CERN dispatches about 200 tonnes of paper and cardboard to a recycling plant, but this is still too little when you take into consideration the tonnes of paper and cardboard that are still thrown out as part of ordinary rubbish or are incorrectly sorted into other rubbish skips.   Each office is equipped with a wastepaper bin, and a paper and cardboard container is available near every building. Cardboard boxes should be folded before they are placed in the containers in order to save space. Please note: Here are some sobering statistics: - 2 to 3 tonnes of wood pulp are required to manufacture 1 tonne of paper. - Each tonne of recycled paper means that we can save approximately 15 trees and substantial amounts of the water that is needed to extract cellulose (60 litres of water per kilo of paper). - A production of 100% recycled paper represents a 90% saving in water. - 5000 kWh of e...

  12. Microfluidic-chip platform for cell sorting

    Science.gov (United States)

    Malik, Sarul; Balyan, Prerna; Akhtar, J.; Agarwal, Ajay

    2016-04-01

    Cell sorting and separation are considered to be very crucial preparatory steps for numerous clinical diagnostics and therapeutics applications in cell biology research arena. Label free cell separation techniques acceptance rate has been increased to multifold by various research groups. Size based cell separation method focuses on the intrinsic properties of the cell which not only avoids clogging issues associated with mechanical and centrifugation filtration methods but also reduces the overall cost for the process. Consequentially flow based cell separation method for continuous flow has attracted the attention of millions. Due to the realization of structures close to particle size in micro dimensions, the microfluidic devices offer precise and rapid particle manipulation which ultimately leads to an extraordinary cell separation results. The proposed microfluidic device is fabricated to separate polystyrene beads of size 1 µm, 5 µm, 10 µm and 20 µm. The actual dimensions of blood corpuscles were kept in mind while deciding the particle size of polystyrene beads which are used as a model particles for study.

  13. Nanoplasmonic lenses for bacteria sorting (Presentation Recording)

    Science.gov (United States)

    Zhu, Xiangchao; Yanik, Ahmet A.

    2015-08-01

    We demonstrate that patches of two dimensional arrays of circular plasmonic nanoholes patterned on gold-titanium thin film enables subwavelength focusing of visible light in far field region. Efficient coupling of the light with the excited surface plasmon at metal dielectric interface results in strong light transmission. As a result, surface plasmon plays an important role in the far field focusing behavior of the nanohole-aperture patches device. Furthermore, the focal length of the focused beam was found to be predominantly dependent on the overall size of the patch, which is in good agreement with that calculated by Rayleigh-Sommerfield integral formula. The focused light beam can be utilized to separate bio-particles in the dynamic range from 0.1 μm to 1 μm through mainly overcoming the drag force induced by fluid flow. In our proposed model, focused light generated by our plasmonic lenses will push the larger bio-particles in size back to the source of fluid flow and allow the smaller particles to move towards the central aperture of the patch. Such a new kind of plasmonic lenses open up possibility of sorting bacterium-like particles with plasmonic nanolenses, and also represent a promising tool in the field of virology.

  14. Chromosome numbers in Bromeliaceae

    Directory of Open Access Journals (Sweden)

    Cotias-de-Oliveira Ana Lúcia Pires

    2000-01-01

    Full Text Available The present study reports chromosome numbers of 17 species of Bromeliaceae, belonging to the genera Encholirium, Bromelia, Orthophytum, Hohenbergia, Billbergia, Neoglaziovia, Aechmea, Cryptanthus and Ananas. Most species present 2n = 50, however, Bromelia laciniosa, Orthophytum burle-marxii and O. maracasense are polyploids with 2n = 150, 2n = 100 and 2n = 150, respectively, while for Cryptanthus bahianus, 2n = 34 + 1-4B. B chromosomes were observed in Bromelia plumieri and Hohenbergia aff. utriculosa. The chromosome number of all species was determined for the first time, except for Billbergia chlorosticta and Cryptanthus bahianus. Our data supports the hypothesis of a basic number of x = 25 for the Bromeliaceae family and decreasing aneuploidy in the genus Cryptanthus.

  15. Those amazing dinoflagellate chromosomes

    Institute of Scientific and Technical Information of China (English)

    PETER J RIZZO

    2003-01-01

    Dinoflagellates are a very large and diverse group of eukaryotic algae that play a major role in aquatic food webs of both fresh water and marine habitats. Moreover, the toxic members of this group pose a health threat in the form of red tides. Finally, dinoflagellates are of great evolutionary importance,because of their taxonomic position, and their unusual chromosome structure and composition. While the cytoplasm of dinoflagellates is typically eukaryotic, the nucleus is unique when compared to the nucleus of other eukaryotes. More specifically, while the chromosomes of all other eukaryotes contain histones,dinoflagellate chromosomes lack histones completely. There are no known exceptions to this observation: all dinoflagellates lack histones, and all other eukaryotes contain histones. Nevertheless, dinoflagellates remain a relatively unstudied group of eukaryotes.

  16. Guest Editorial: Card sort methodology: An objective measure in rehabilitation research

    Directory of Open Access Journals (Sweden)

    Haitham Jahrami, PhD

    2012-04-01

    Full Text Available Card sort clinical tests such as the Wisconsin Card Sort Test and Activity Card Sort are well known in several clinical practices, including psychiatry, neurology, neuropsychology, and learning disabilities. However, card sort methodology is less famous as a research methodology. This editorial attempts to shed light on the novelty of the card sort methodology and its relevance to rehabilitation research.

  17. Guest Editorial: Card sort methodology: An objective measure in rehabilitation research

    OpenAIRE

    Haitham Jahrami, PhD

    2012-01-01

    Card sort clinical tests such as the Wisconsin Card Sort Test and Activity Card Sort are well known in several clinical practices, including psychiatry, neurology, neuropsychology, and learning disabilities. However, card sort methodology is less famous as a research methodology. This editorial attempts to shed light on the novelty of the card sort methodology and its relevance to rehabilitation research.

  18. Microfluidic EmbryoSort technology: towards in flow analysis, sorting and dispensing of individual vertebrate embryos

    Science.gov (United States)

    Fuad, Nurul M.; Wlodkowic, Donald

    2013-12-01

    The demand to reduce the numbers of laboratory animals has facilitated the emergence of surrogate models such as tests performed on zebrafish (Danio rerio) or African clawed frog's (Xenopus levis) eggs, embryos and larvae. Those two model organisms are becoming increasingly popular replacements to current adult animal testing in toxicology, ecotoxicology and also in drug discovery. Zebrafish eggs and embryos are particularly attractive for toxicological analysis due their size (diameter 1.6 mm), optical transparency, large numbers generated per fish and very straightforward husbandry. The current bottleneck in using zebrafish embryos for screening purposes is, however, a tedious manual evaluation to confirm the fertilization status and subsequent dispensing of single developing embryos to multitier plates to perform toxicity analysis. Manual procedures associated with sorting hundreds of embryos are very monotonous and as such prone to significant analytical errors due to operator's fatigue. In this work, we present a proofof- concept design of a continuous flow embryo sorter capable of analyzing, sorting and dispensing objects ranging in size from 1.5 - 2.5 mm. The prototypes were fabricated in polymethyl methacrylate (PMMA) transparent thermoplastic using infrared laser micromachining. The application of additive manufacturing processes to prototype Lab-on-a-Chip sorters using both fused deposition manufacturing (FDM) and stereolithography (SLA) were also explored. The operation of the device was based on a revolving receptacle capable of receiving, holding and positioning single fish embryos for both interrogation and subsequent sorting. The actuation of the revolving receptacle was performed using a DC motor and/or microservo motor. The system was designed to separate between fertilized (LIVE) and non-fertilized (DEAD) eggs, based on optical transparency using infrared (IR) emitters and receivers.

  19. First results from insemination with sex-sorted semen in dairy heifers in Macedonia

    Directory of Open Access Journals (Sweden)

    Ljupche Kochoski

    2015-03-01

    Full Text Available Science has been searching for a long time for a reliable method for controlling the sex of mammalian offspring. Recently, the application of specific modern cellular methodologies has led to the development of a flow cytometric system capable of differentiating and separating living X- and Y-chromosome-bearing sperm cells in amounts suitable for AI and therefore, commercialization of this sexing technology. The aim of this work was to present the first results of heifers that introduce bovine AI with sex sorted semen, for the first time in Macedonia. Insemination with sex sorted cryopreserved semen (2x106 spermatozoa per dose imported from the USA was done at two dairy farms in ZK Pelagonija. In total, 74 heifers (Holstein Friesian were inseminated. Inseminations were carried out in a timely manner following a modified OvSynch protocol. During the insemination, the sperm was deposited into the uterine horn ipsi lateral to the ovary where a follicle larger than 1.6 cm was detected by means of transrectal ultrasound examination. Pregnancy was checked by ultrasound on day 30 after the insemination. Overall, the average pregnancy rate in both farms was 43,24% (40,54% and 45,95%, for farm 1 and farm 2, respectively. All pregnant heifers delivered their calves following a normal gestation length (274,3 days in average and of the 32 born calves, 30 (93,75% were female. In conclusion, since the first results from inseminations with sex-sorted semen in dairy heifers in Macedonia are very promising, the introduction of this technique may bring much benefit to the local dairy sector. Average pregnancy rate seems similar with results obtained following ‘regular’ inseminations, notwithstanding the relatively low number of spermatozoa per insemination dose. Due to the latter, we however recommend inseminations only to be carried out by experienced technicians followinga TAI protocol and ultrasound examinations of the ovaries prior to insemination.

  20. Ring chromosome 13

    DEFF Research Database (Denmark)

    Brandt, C A; Hertz, Jens Michael; Petersen, M B; Vogel, F; Noer, H; Mikkelsen, M

    1992-01-01

    A stillborn male child with anencephaly and multiple malformations was found to have the karyotype 46,XY,r(13) (p11q21.1). The breakpoint at 13q21.1, determined by high resolution banding, is the most proximal breakpoint ever reported in patients with ring chromosome 13. In situ hybridisation with...

  1. The Y Chromosome

    Science.gov (United States)

    Offner, Susan

    2010-01-01

    The Y chromosome is of great interest to students and can be used to teach about many important biological concepts in addition to sex determination. This paper discusses mutation, recombination, mammalian sex determination, sex determination in general, and the evolution of sex determination in mammals. It includes a student activity that…

  2. Chromosomes, cancer and radiosensitivity

    Energy Technology Data Exchange (ETDEWEB)

    Samouhos, E.

    1983-08-01

    Some specific chromosomal abnormalities are associated with certain cancers. The earliest description of such a specific association is the one of the Philadelphia chromosome and myelogenous leukemia (1960). Other congenital karyotype abnormalities are associated with specific cancers. Examples of these are Down's syndrome with leukemia and Klinefelter's syndrome with male breast cancer. Genetic diseases of increased chromosome breakage, or of defective chromosome repair, are associated with greatly increased cancer incidence. Three such diseases have been recognized: 1) Fanconi's anemia, associated with leukemias and lymphomas, 2) Bloom's syndrome, associated with acute leukemias and lymphosarcoma, and 3) ataxia telangiectasia, associated with Hodgkin's disease, leukemia, and lymphosarcomas. Ten percent of individuals with ataxia telangiectasia will develop one of these neoplasms. Individuals with certain of these syndromes display an unusually high radiosensitivity. Radiation therapy for cancers has been fatal in patients who received as low as 3000 rad. This remarkable radiosensitivity has been quantitated in cell cultures from such cases. Evidence suggests that the apparent sensitivity may reflect subnormal ability to repair radiation damage. The rapid proliferation of information in this field stems from the interdigitation of many disciplines and specialties, including cytogenetics, cell biology, molecular biology, epidemiology, radiobiology, and several others. This paper is intended for clinicians; it presents a structured analytic scheme for correlating and classifying this multidisciplinary information as it becomes available.

  3. Chromosomes, cancer and radiosensitivity

    International Nuclear Information System (INIS)

    Some specific chromosomal abnormalities are associated with certain cancers. The earliest description of such a specific association is the one of the Philadelphia chromosome and myelogenous leukemia (1960). Other congenital karyotype abnormalities are associated with specific cancers. Examples of these are Down's syndrome with leukemia and Klinefelter's syndrome with male breast cancer. Genetic diseases of increased chromosome breakage, or of defective chromosome repair, are associated with greatly increased cancer incidence. Three such diseases have been recognized: 1) Fanconi's anemia, associated with leukemias and lymphomas, 2) Bloom's syndrome, associated with acute leukemias and lymphosarcoma, and 3) ataxia telangiectasia, associated with Hodgkin's disease, leukemia, and lymphosarcomas. Ten percent of individuals with ataxia telangiectasia will develop one of these neoplasms. Individuals with certain of these syndromes display an unusually high radiosensitivity. Radiation therapy for cancers has been fatal in patients who received as low as 3000 rad. This remarkable radiosensitivity has been quantitated in cell cultures from such cases. Evidence suggests that the apparent sensitivity may reflect subnormal ability to repair radiation damage. The rapid proliferation of information in this field stems from the interdigitation of many disciplines and specialties, including cytogenetics, cell biology, molecular biology, epidemiology, radiobiology, and several others. This paper is intended for clinicians; it presents a structured analytic scheme for correlating and classifying this multidisciplinary information as it becomes available

  4. Chromosome Morphology in Kniphofia.

    Directory of Open Access Journals (Sweden)

    J. M. J de Wet

    1960-12-01

    Full Text Available A number of species and varieties of the genus  Kniphofia (Liliaceae were studied cytologically. The somatic chromosome number is  2n = 12 in all the species. This is also true in  Notosceptrum natalense Baker.

  5. Telomere dysfunction and chromosome instability

    Energy Technology Data Exchange (ETDEWEB)

    Murnane, John P., E-mail: jmurnane@radonc.ucsf.edu [Department of Radiation Oncology, University of California San Francisco, 2340 Sutter Street, San Francisco, CA 94143-1331 (United States)

    2012-02-01

    The ends of chromosomes are composed of a short repeat sequence and associated proteins that together form a cap, called a telomere, that keeps the ends from appearing as double-strand breaks (DSBs) and prevents chromosome fusion. The loss of telomeric repeat sequences or deficiencies in telomeric proteins can result in chromosome fusion and lead to chromosome instability. The similarity between chromosome rearrangements resulting from telomere loss and those found in cancer cells implicates telomere loss as an important mechanism for the chromosome instability contributing to human cancer. Telomere loss in cancer cells can occur through gradual shortening due to insufficient telomerase, the protein that maintains telomeres. However, cancer cells often have a high rate of spontaneous telomere loss despite the expression of telomerase, which has been proposed to result from a combination of oncogene-mediated replication stress and a deficiency in DSB repair in telomeric regions. Chromosome fusion in mammalian cells primarily involves nonhomologous end joining (NHEJ), which is the major form of DSB repair. Chromosome fusion initiates chromosome instability involving breakage-fusion-bridge (B/F/B) cycles, in which dicentric chromosomes form bridges and break as the cell attempts to divide, repeating the process in subsequent cell cycles. Fusion between sister chromatids results in large inverted repeats on the end of the chromosome, which amplify further following additional B/F/B cycles. B/F/B cycles continue until the chromosome acquires a new telomere, most often by translocation of the end of another chromosome. The instability is not confined to a chromosome that loses its telomere, because the instability is transferred to the chromosome donating a translocation. Moreover, the amplified regions are unstable and form extrachromosomal DNA that can reintegrate at new locations. Knowledge concerning the factors promoting telomere loss and its consequences is

  6. Organization of the bacterial chromosome.

    OpenAIRE

    Krawiec, S.; Riley, M

    1990-01-01

    Recent progress in studies on the bacterial chromosome is summarized. Although the greatest amount of information comes from studies on Escherichia coli, reports on studies of many other bacteria are also included. A compilation of the sizes of chromosomal DNAs as determined by pulsed-field electrophoresis is given, as well as a discussion of factors that affect gene dosage, including redundancy of chromosomes on the one hand and inactivation of chromosomes on the other hand. The distinction ...

  7. Microspherical photonics: Sorting resonant photonic atoms by using light

    Energy Technology Data Exchange (ETDEWEB)

    Maslov, Alexey V., E-mail: avmaslov@yandex.ru [University of Nizhny Novgorod, Nizhny Novgorod (Russian Federation); Astratov, Vasily N., E-mail: astratov@uncc.edu [Department of Physics and Optical Science, Center for Optoelectronics and Optical Communications, University of North Carolina at Charlotte, Charlotte, North Carolina 28223-0001 (United States)

    2014-09-22

    A method of sorting microspheres by resonant light forces in vacuum, air, or liquid is proposed. Based on a two-dimensional model, it is shown that the sorting can be realized by allowing spherical particles to traverse a focused beam. Under resonance with the whispering gallery modes, the particles acquire significant velocity along the beam direction. This opens a unique way of large-volume sorting of nearly identical photonic atoms with 1/Q accuracy, where Q is the resonance quality factor. This is an enabling technology for developing super-low-loss coupled-cavity structures and devices.

  8. Microspherical photonics: Sorting resonant photonic atoms by using light

    International Nuclear Information System (INIS)

    A method of sorting microspheres by resonant light forces in vacuum, air, or liquid is proposed. Based on a two-dimensional model, it is shown that the sorting can be realized by allowing spherical particles to traverse a focused beam. Under resonance with the whispering gallery modes, the particles acquire significant velocity along the beam direction. This opens a unique way of large-volume sorting of nearly identical photonic atoms with 1/Q accuracy, where Q is the resonance quality factor. This is an enabling technology for developing super-low-loss coupled-cavity structures and devices.

  9. Development of a biological dosimeter for translocation scoring based on two-color fluorescence in situ hybridization of chromosome subsets

    International Nuclear Information System (INIS)

    Recently fluorescence in situ hybridization protocols have been developed which allow the paining of individual chromosomes using DNA-libraries from sorted human chromosomes. This approach has the particular advantage that radiation induced chromosome translocations can be easily detected, if chromosomes of distinctly different colors take part in the translocation event. To enhance the sensitivity of this approach two metaphase chromosome subsets A and B (A: chromosome 1, 2, 4, 8, 16; B: 3, 5, 9, 10, 13) were simultaneously painted in green and red color. Counterstaining of the chromosomes with DAPI resulted in a third subset which exhibited blue fluorescence only. Green-red, green-blue and red-blue translocation chromosomes could be easily detected after irradiation of lymphocyte cultures with 137Cs-γ-rays. Analyses of painted chromosomes can be combined with conventional GTG-banding analyses. This new biological dosimeter should become useful to monitor both long term effects of single irradiation events and the cumulative effects of multiple or chronic irradiation exposure. In contrast to translocation scoring based on the analysis of banded chromosomes, this new approach has the particular advantage that a rapid, automated scoring of translocations can now be envisaged. (author)

  10. The chromosomes of the Didelphidae (Marsupialia) and their evolutionary significance

    Science.gov (United States)

    Reig, O.; Gardner, A.L.; Bianchi, N.O.; Patton, J.L.

    1977-01-01

    One hundred and seventy-seven specimens of American didelphids, representing 9 genera and 22 species have been studied for their chromosomal constitution. Didelphids are very conservative in chromosomal complements. All of the studied species can be sorted into one of three kinds of karyotypes: 2n= 14 (three species of Didelphis, one of Lutreolina, two of Philander, and one of Chironectes), 2n = 14 (eight species of Marmosa, one of Metachirus, three of Caluromys, and one of Dromiciops), and 2n= 18 (three species of Monodelphis). These karyotypes are stable, showing only minor variations within each basic pattern. It is concluded that chromosomals evolution in the Didelphidae proceededs from low numbers to higher numbers by a process of centromeric fissioning complemented by some pericentric inversions and/or translocations. The pattern of karyotypic stability is consistent with bradytely at the organismic level of evolution. This is explained by a low rate of regulatory genetic evolution promoted by epistatic selection favouring the retention of chromosomal arrangements highly advantageous for overall adaptation.

  11. [Chromosomal organization of the genomes of small-chromosome plants].

    Science.gov (United States)

    Muravenko, O V; Zelenin, A V

    2009-11-01

    An effective approach to study the chromosome organization in genomes of plants with small chromosomes and/or with low-informative C-banding patterns was developed in the course of investigation of the karyotypes of cotton plant, camomile, flax, and pea. To increase the resolving power of chromosome analysis, methods were worked out for revealing early replication patterns on chromosomes and for artificial impairment of mitotic chromosome condensation with the use of a DNA intercalator, 9-aminoacridine (9-AMA). To estimate polymorphism of the patterns of C-banding of small chromosomes on preparations obtained with the use of 9-AMA, it is necessary to choose a length interval that must not exceed three average sizes of metaphase chromosomes without the intercalator. The use of 9-AMA increases the resolution of differential C- and OR-banding and the precision of physical chromosome mapping by the FISH method. Of particular importance in studying small chromosomes is optimization of the computer-aided methods used to obtain and process chromosome images. The complex approach developed for analysis of the chromosome organization in plant genomes was used to study the karyotypes of 24 species of the genus Linum L. It permitted their chromosomes to be identified for the first time, and, in addition, B chromosomes were discovered and studied in the karyotypes of the species of the section Syllinum. By similarity of the karyotypes, the studied flax species were distributed in eight groups in agreement with the clusterization of these species according to the results of RAPD analysis performed in parallel. Systematic positions and phylogenetic relationships of the studied flax species were verified. Out results can serve as an important argument in favour of the proposal to develop a special program for sequencing the genome of cultivated flax (L. usitatissimum L.), which is a major representative of small-chromosome species. PMID:20058798

  12. Analysis of nucleotide sequence of Pisum sativum chromosome-5-specific library

    Czech Academy of Sciences Publication Activity Database

    Wolko, L.; Vrána, Jan; Doležel, Jaroslav; Slomski, R.

    Poznan : Institute of Plant Genetics PAS, 2004 - (Sadowski, J.), s. 79-88 [International Workshop 'Understanding the Plant Genomeö. Poznan (PL), 02.06.2003-03.06.2003] R&D Projects: GA ČR GA521/03/0595 Grant ostatní: State Committee for Scientific Research (KBN)(PL) 5 P06A 015 19 Institutional research plan: CEZ:AV0Z5038910 Keywords : Pisum sativum * flow-sorted chromosomes * chromosome-5-specific DNA library Subject RIV: EB - Genetics ; Molecular Biology

  13. An Empirical Model of Wage Dispersion with Sorting

    DEFF Research Database (Denmark)

    Bagger, Jesper; Lentz, Rasmus

    This paper studies wage dispersion in an equilibrium on-the-job-search model with endogenous search intensity. Workers differ in their permanent skill level and firms differ with respect to productivity. Positive (negative) sorting results if the match production function is supermodular (submodu......This paper studies wage dispersion in an equilibrium on-the-job-search model with endogenous search intensity. Workers differ in their permanent skill level and firms differ with respect to productivity. Positive (negative) sorting results if the match production function is supermodular...... dispersion. We decompose wage variation into four sources: Worker heterogeneity, firm heterogeneity, frictions, and sorting. Worker heterogeneity contributes 51% of the variation, firm heterogeneity contributes 11%, frictions 23%, and finally sorting contributes 15%. We measure the output loss due to...

  14. Natural Selection Is a Sorting Process: What Does that Mean?

    Science.gov (United States)

    Price, Rebecca M.

    2013-01-01

    To learn why natural selection acts only on existing variation, students categorize processes as either creative or sorting. This activity helps students confront the misconception that adaptations evolve because species need them.

  15. Brazil Nuts on Eros: Size-Sorting of Asteroid Regolith

    Science.gov (United States)

    Asphaug, E.; King, P. J.; Swift, M. R.; Merrifield, M. R.

    2001-01-01

    We consider the hypothesis that frequent cratering produces size- or compositionally-sorted asteroid regolith, affecting the structure, texture, and in extreme cases the shape of asteroids. Additional information is contained in the original extended abstract.

  16. Combination of the Sorting Line Priority Polling Control Mechanism

    Directory of Open Access Journals (Sweden)

    Wenxue Ran

    2013-10-01

    Full Text Available The paper proposed the priority polling control mechanism of the unit material combinations sorting lines, and sorters operating process is understood to be the arrival process of orders, service process of each sorter sorts orders and the conversion process between sorting machines. Control process, sorters of the combined sorting lines are divided into the priority sorters and ordinary sorters, priority sorters use full service control, ordinary sorters use limited service (k = 1, applies the polling service system theory, through the embedded Markov chain and probability generating function to establish the mathematical model of the system, the exact solution of the control mechanism of the polling system model and the first and second characteristic parameters, combined with the actual production priority parameters of orders picking for simulation analysis

  17. Running worms: C. elegans self-sorting by electrotaxis.

    Directory of Open Access Journals (Sweden)

    Xavier Manière

    Full Text Available The nematode C. elegans displays complex dynamical behaviors that are commonly used to identify relevant phenotypes. Although its maintenance is straightforward, sorting large populations of worms when looking for a behavioral phenotype is difficult, time consuming and hardly quantitative when done manually. Interestingly, when submitted to a moderate electric field, worms move steadily along straight trajectories. Here, we report an inexpensive method to measure worms crawling velocities and sort them within a few minutes by taking advantage of their electrotactic skills. This method allows to quantitatively measure the effect of mutations and aging on worm's crawling velocity. We also show that worms with different locomotory phenotypes can be spatially sorted, fast worms traveling away from slow ones. Group of nematodes with comparable locomotory fitness could then be isolated for further analysis. C. elegans is a growing model for neurodegenerative diseases and using electrotaxis for self-sorting can improve the high-throughput search of therapeutic bio-molecules.

  18. Sorting on STAR. [CDC computer algorithm timing comparison

    Science.gov (United States)

    Stone, H. S.

    1978-01-01

    Timing comparisons are given for three sorting algorithms written for the CDC STAR computer. One algorithm is Hoare's (1962) Quicksort, which is the fastest or nearly the fastest sorting algorithm for most computers. A second algorithm is a vector version of Quicksort that takes advantage of the STAR's vector operations. The third algorithm is an adaptation of Batcher's (1968) sorting algorithm, which makes especially good use of vector operations but has a complexity of N(log N)-squared as compared with a complexity of N log N for the Quicksort algorithms. In spite of its worse complexity, Batcher's sorting algorithm is competitive with the serial version of Quicksort for vectors up to the largest that can be treated by STAR. Vector Quicksort outperforms the other two algorithms and is generally preferred. These results indicate that unusual instruction sets can introduce biases in program execution time that counter results predicted by worst-case asymptotic complexity analysis.

  19. Using Sorting Networks for Skill Building and Reasoning

    Science.gov (United States)

    Andre, Robert; Wiest, Lynda R.

    2007-01-01

    Sorting networks, used in graph theory, have instructional value as a skill- building tool as well as an interesting exploration in discrete mathematics. Students can practice mathematics facts and develop reasoning and logic skills with this topic. (Contains 4 figures.)

  20. Osteogenic potential of sorted equine mesenchymal stem cell subpopulations

    OpenAIRE

    Radtke, Catherine L.; Nino-Fong, Rodolfo; Rodriguez-Lecompte, Juan Carlos; Esparza Gonzalez, Blanca P.; Stryhn, Henrik; McDuffee, Laurie A.

    2015-01-01

    The objectives of this study were to use non-equilibrium gravitational field-flow fractionation (GrFFF), an immunotag-less method of sorting mesenchymal stem cells (MSCs), to sort equine muscle tissue-derived mesenchymal stem cells (MMSCs) and bone marrow-derived mesenchymal stem cells (BMSC) into subpopulations and to carry out assays in order to compare their osteogenic capabilities. Cells from 1 young adult horse were isolated from left semitendinosus muscle tissue and from bone marrow asp...

  1. Sorting and hardware assisted rendering for volume visualization

    Energy Technology Data Exchange (ETDEWEB)

    Stein, C.; Becker, B.; Max, N.

    1994-03-01

    We present some techniques for volume rendering unstructured data. Interpolation between vertex colors and opacities is performed using hardware assisted texture mapping, and color is integrated for use with a volume rendering system. We also present an O(n{sup 2}) method for sorting n arbitrarily shaped convex polyhedra prior to visualization. It generalizes the Newell, Newell and Sancha sort for polygons to 3-D volume elements.

  2. Pipelined Sort-last Rendering: Scalability, Performance and Beyond

    OpenAIRE

    Cavin, Xavier; Mion, Christophe

    2006-01-01

    We present in this paper a theoretical and practical performance analysis of pipelined sort-last rendering for both polygonal and volume rendering. Theoretical peak performance and scalability are studied, exhibiting maximum attainable framerates of 19 fps (volume rendering with back-to-front alpha blending) and 11 fps (polygonal rendering with Z-buffer compositing) for a 1280×1024 display on a Gigabit Ethernet cluster. We show that our implementation of pipelined sort-last rendering on a 17-...

  3. Chromosome 19 International Workshop

    Energy Technology Data Exchange (ETDEWEB)

    Pericak-Vance, M.A. (Duke Univ., Durham, NC (United States). Medical Center); Ropers, H.H. (Univ. Hospital Nijmegen, (The Netherlands). Dept. of Human Genetics); Carrano, A.J. (Lawrence Livermore National Lab., CA (United States))

    1993-01-04

    The Second International Workshop on Human Chromosome 19 was hosted on January 25 and 26, 1992, by the Department of Human Genetics, University Hospital Nijmegen, The Netherlands, at the 'Meerdal Conference Center'. The workshop was supported by a grant from the European Community obtained through HUGO, the Dutch Research Organization (NWO) and the Muscular Dystrophy Association (MDA). Travel support for American participants was provided by the Department of Energy. The goals of this workshop were to produce genetic, physical and integrated maps of chromosome 19, to identify inconsistencies and gaps, and to discuss and exchange resources and techniques available for the completion of these maps. The second day of the meeting was largely devoted to region or disease specific efforts. In particular, the meeting served as a platform for assessing and discussing the recent progress made into the molecular elucidation of myotonic dystrophy.

  4. An Evaluation of the Critical Factors Affecting the Efficiency of Some Sorting Techniques

    Directory of Open Access Journals (Sweden)

    Olabiyisi S.O.

    2013-02-01

    Full Text Available Sorting allows information or data to be put into a meaningful order. As efficiency is a major concern of computing, data are sorted in order to gain the efficiency in retrieving or searching tasks. The factors affecting the efficiency of shell, Heap, Bubble, Quick and Merge sorting techniques in terms of running time, memory usage and the number of exchanges were investigated. Experiment was conducted for the decision variables generated from algorithms implemented in Java programming and factor analysis by principal components of the obtained experimental data was carried out in order to estimate the contribution of each factor to the success of the sorting algorithms. Further statistical analysis was carried out to generate eigenvalue of the extracted factor and hence, a system of linear equations which was used to estimate the assessment of each factor of the sorting techniques was proposed. The study revealed that the main factor affecting these sorting techniques was time taken to sort. It contributed 97.842%, 97.693%, 89.351%, 98.336% and 90.480% for Bubble sort, Heap sort, Merge sort, Quick sort and Shell sort respectively. The number of swap came second contributing 1.587% for Bubble sort, 2.305% for Heap sort, 10.63% for Merge sort, 1.643% for Quick sort and 9.514% for Shell sort. The memory used was the least of the factors contributing negligible percentage for the five sorting techniques. It contributed 0.571% for Bubble sort, 0.002% for Heap sort, 0.011% for Merge sort, 0.021% for Quick sort and 0.006% for Shell sort.

  5. Human Chromosome 21: Mapping of the chromosomes and cloning of cDNAs

    Energy Technology Data Exchange (ETDEWEB)

    Antonarakis, S.E.

    1991-09-01

    The objective of the research funded by DOE grant DE-FG02-89ER60857 from 6/15/89 to 8/31/91 was to contribute to the physical mapping of human chromosome 21 (HC21) by cloning large fragments of DNA into Yeast Artificial Chromosomes (YACs) and identify YACs that map on HC21. A total of 54 sequence tagged sites (STS) have been developed and mapped in our laboratory to HC21 and can be used as initial reference points for YAC identification and construction of overlapping clones. A small YAC library was constructed which is HC21 specific. DNA from somatic cell hybrid WAV17 or from flow-sorted HC21 was partially digested with EcoRI, ligated into vectors PJS97, PJS98, and YACs have been obtained with average size insert of more than 300 kb. This library has been deposited in D. Patterson's lab for the Joint YAC screening effort. Additional YAC libraries from ICI Pharmaceuticals or from Los Alamos National Laboratories have been screened with several STS and positive YACs have been identified. Work in progress includes screening of YAC libraries in order to construct overlapping clones, characterization of the cloning ends of YACs, characterization of additional STS and cloning of HC21 specific cDNAs. 15 refs., 2 figs., 5 tabs.

  6. Molecular organization and comparative analysis of chromosome 5B of the wild wheat ancestor Triticum dicoccoides

    OpenAIRE

    Akpınar, Bala Anı; Akpinar, Bala Ani; Yüce, Meral; Yuce, Meral; Lucas, Stuart J.; Vrana, Jan; Buresova, Veronika; Dolezel, Jaroslav; Budak, Hikmet

    2015-01-01

    Wild emmer wheat, Triticum turgidum ssp. dicoccoides is the wild relative of Triticum turgidum, the progenitor of durum and bread wheat, and maintains a rich allelic diversity among its wild populations. The lack of adequate genetic and genomic resources, however, restricts its exploitation in wheat improvement. Here, we report next-generation sequencing of the flow-sorted chromosome 5B of T. dicoccoides to shed light into its genome structure, function and organization by exploring the repet...

  7. Array painting: a protocol for the rapid analysis of aberrant chromosomes using DNA microarrays

    Science.gov (United States)

    Gribble, Susan M; Ng, Bee Ling; Prigmore, Elena; Fitzgerald, Tomas; Carter, Nigel P

    2012-01-01

    Aarray painting is a technique that uses microarray technology to rapidly map chromosome translocation breakpoints. previous methods to map translocation breakpoints have used fluorescence in situ hybridization (FIsH) and have consequently been labor-intensive, time-consuming and restricted to the low breakpoint resolution imposed by the use of metaphase chromosomes. array painting combines the isolation of derivative chromosomes (chromosomes with translocations) and high-resolution microarray analysis to refine the genomic location of translocation breakpoints in a single experiment. In this protocol, we describe array painting by isolation of derivative chromosomes using a MoFlo flow sorter, amplification of these derivatives using whole-genome amplification and hybridization onto commercially available oligonucleotide microarrays. although the sorting of derivative chromosomes is a specialized procedure requiring sophisticated equipment, the amplification, labeling and hybridization of Dna is straightforward, robust and can be completed within 1 week. the protocol described produces good quality data; however, array painting is equally achievable using any combination of the available alternative methodologies for chromosome isolation, amplification and hybridization. PMID:19893508

  8. Spike sorting for polytrodes: a divide and conquer approach

    Directory of Open Access Journals (Sweden)

    Nicholas V. Swindale

    2014-02-01

    Full Text Available In order to determine patterns of neural activity, spike signals recorded by extracellular electrodes have to be clustered (sorted with the aim of ensuring that each cluster represents all the spikes generated by an individual neuron. Many methods for spike sorting have been proposed but few are easily applicable to recordings from polytrodes which may have 16 or more recording sites. As with tetrodes, these are spaced sufficiently closely that signals from single neurons will usually be recorded on several adjacent sites. Although this offers a better chance of distinguishing neurons with similarly shaped spikes, sorting is difficult in such cases because of the high dimensionality of the space in which the signals must be classified. This report details a method for spike sorting based on a divide and conquer approach. Clusters are initially formed by assigning each event to the channel on which it is largest. Each channel-based cluster is then sub-divided into as many distinct clusters as possible. These are then recombined on the basis of pairwise tests into a final set of clusters. Pairwise tests are also performed to establish how distinct each cluster is from the others. A modified gradient ascent clustering (GAC algorithm is used to do the clustering. The method can sort spikes with minimal user input in times comparable to real time for recordings lasting up to 45 minutes. Our results illustrate some of the difficulties inherent in spike sorting, including changes in spike shape over time. We show that some physiologically distinct units may have very similar spike shapes. We show that RMS measures of spike shape similarity are not sensitive enough to discriminate clusters that can otherwise be separated by principal components analysis. Hence spike sorting based on least-squares matching to templates may be unreliable. Our methods should be applicable to tetrodes and scaleable to larger multi-electrode arrays (MEAs.

  9. Neuronal spike sorting based on radial basis function neural networks

    Directory of Open Access Journals (Sweden)

    Taghavi Kani M

    2011-02-01

    Full Text Available "nBackground: Studying the behavior of a society of neurons, extracting the communication mechanisms of brain with other tissues, finding treatment for some nervous system diseases and designing neuroprosthetic devices, require an algorithm to sort neuralspikes automatically. However, sorting neural spikes is a challenging task because of the low signal to noise ratio (SNR of the spikes. The main purpose of this study was to design an automatic algorithm for classifying neuronal spikes that are emitted from a specific region of the nervous system."n "nMethods: The spike sorting process usually consists of three stages: detection, feature extraction and sorting. We initially used signal statistics to detect neural spikes. Then, we chose a limited number of typical spikes as features and finally used them to train a radial basis function (RBF neural network to sort the spikes. In most spike sorting devices, these signals are not linearly discriminative. In order to solve this problem, the aforesaid RBF neural network was used."n "nResults: After the learning process, our proposed algorithm classified any arbitrary spike. The obtained results showed that even though the proposed Radial Basis Spike Sorter (RBSS reached to the same error as the previous methods, however, the computational costs were much lower compared to other algorithms. Moreover, the competitive points of the proposed algorithm were its good speed and low computational complexity."n "nConclusion: Regarding the results of this study, the proposed algorithm seems to serve the purpose of procedures that require real-time processing and spike sorting.

  10. Molecular fundamentals of chromosomal mutagenesis

    International Nuclear Information System (INIS)

    Precise quantitative correlation between the yield of chromosome structure damages and the yield of DNA damages is shown when comparing data on molecular and cytogenetic investigations carried out in cultural Mammalia cells. As the chromosome structure damage is to be connected with the damage of its carcass structure, then it is natural that DNA damage in loop regions is not to affect considerably the structure, while DNA damage lying on the loop base and connected with the chromosome carcass is to play a determining role in chromosomal mutagenesis. This DNA constitutes 1-2% from the total quantity of nuclear DNA. If one accepts that damages of these regions of DNA are ''hot'' points of chromosomal mutagenesis, then it becomes clear why 1-2% of preparation damages in a cell are realized in chromosome structural damages

  11. Electochemical detection of chromosome translocation

    DEFF Research Database (Denmark)

    Kwasny, Dorota; Dimaki, Maria; Silahtaroglu, Asli;

    2014-01-01

    Cytogenetics is a study of the cell structure with a main focus on chromosomes content and their structure. Chromosome abnormalities, such as translocations may cause various genetic disorders and heametological malignancies. Chromosome translocations are structural rearrangements of two...... hybridization approach developed for label-free detection of the chromosome translocations. For specific translocation detection it is necessary to determine that the two DNA sequences forming a derivative chromosome are connected, which is achieved by two subsequent hybridization steps. The electrochemical...... impedance spectroscopy was selected as the sensing method on a microfabricated chip with array of 12 electrode sets. Two independent chips (Chip1 and Chip2) were used for targeting the chromosomal fragments involved in the translocation. Each chip was differentially functionalized with DNA probes matching...

  12. Intraspecific chromosome variability

    Directory of Open Access Journals (Sweden)

    N Dubinin

    2010-12-01

    Full Text Available (Editorial preface. The publication is presented in order to remind us of one of dramatic pages of the history of genetics. It re-opens for the contemporary reader a comprehensive work marking the priority change from plant cytogenetics to animal cytogenetics led by wide population studies which were conducted on Drosophila polytene chromosomes. The year of the publication (1937 became the point of irretrievable branching between the directions of Old World and New World genetics connected with the problems of chromosome variability and its significance for the evolution of the species. The famous book of T. Dobzhansky (1937 was published by Columbia University in the US under the title “Genetics and the origin of species”, and in the shadow of this American ‘skybuilding’ all other works grew dim. It is remarkable that both Dobzhansky and Dubinin come to similar conclusions about the role of chromosomes in speciation. This is not surprising given that they both might be considered as representatives of the Russian genetic school, by their birth and education. Interestingly, Dobzhansky had never referred to the full paper of Dubinin et al. (1937, though a previous short communication in Nature (1936 was included together with all former papers on the related subject. In full, the volume of the original publication printed in the Biological Journal in Moscow comprised 47 pages, in that number 41 pages of the Russian text accompanied by 16 Figs, a table and reference list, and, above all, 6 pages of the English summary. This final part in English is now reproduced in the authors’ version with the only addition being the reference list in the originally printed form.

  13. Reference-assisted chromosome assembly

    OpenAIRE

    Kim, Jaebum; Larkin, Denis M; Cai, Qingle; Asan,; Zhang, Yongfen; Ge, Ri-Li; Auvil, Loretta; Capitanu, Boris; Zhang, Guojie; Lewin, Harris A.; Ma, Jian

    2013-01-01

    One of the most difficult problems in modern genomics is the assembly of full-length chromosomes using next generation sequencing (NGS) data. To address this problem, we developed “reference-assisted chromosome assembly” (RACA), an algorithm to reliably order and orient sequence scaffolds generated by NGS and assemblers into longer chromosomal fragments using comparative genome information and paired-end reads. Evaluation of results using simulated and real genome assemblies indicates that ou...

  14. Sorting centimetre-long single-walled carbon nanotubes

    Science.gov (United States)

    Yu, Woo Jong; Chae, Sang Hoon; Vu, Quoc An; Lee, Young Hee

    2016-08-01

    While several approaches have been developed for sorting metallic (m) or semiconducting (s) single-walled carbon nanotubes (SWCNTs), the length of SWCNTs is limited within a micrometer, which restricts excellent electrical performances of SWCNTs for macro-scale applications. Here, we demonstrate a simple sorting method of centimetre-long aligned m- and s-SWCNTs. Ni particles were selectively and uniformly coated along the 1-cm-long m-SWCNTs by applying positive gate bias during electrochemical deposition with continuous electrolyte injection. To sort s-SWCNTs, the Ni coating was oxidized to form insulator outer for blocking of current flow through inner m-SWCNTs. Sorting of m-SWCNTs were demonstrated by selective etching of s-SWCNTs via oxygen plasma, while the protected m-SWCNTs by Ni coating remained intact. The series of source-drain pairs were patterned along the 1-cm-long sorted SWCNTs, which confirmed high on/off ratio of 104–108 for s-SWCNTs and nearly 1 for m-SWCNTs.

  15. Mechanically robust microfluidics and bulk wave acoustics to sort microparticles

    Science.gov (United States)

    Dauson, Erin R.; Gregory, Kelvin B.; Greve, David W.; Healy, Gregory P.; Oppenheim, Irving J.

    2016-04-01

    Sorting microparticles (or cells, or bacteria) is significant for scientific, medical and industrial purposes. Research groups have used lithium niobate SAW devices to produce standing waves, and then to align microparticles at the node lines in polydimethylsiloxane (PDMS, silicone) microfluidic channels. The "tilted angle" (skewed) configuration is a recent breakthrough producing particle trajectories that cross multiple node lines, making it practical to sort particles. However, lithium niobate wafers and PDMS microfluidic channels are not mechanically robust. We demonstrate "tilted angle" microparticle sorting in novel devices that are robust, rapidly prototyped, and manufacturable. We form our microfluidic system in a rigid polymethyl methacrylate (PMMA, acrylic) prism, sandwiched by lead-zirconium-titanate (PZT) wafers, operating in through-thickness mode with inertial backing, that produce standing bulk waves. The overall configuration is compact and mechanically robust, and actuating PZT wafers in through-thickness mode is highly efficient. Moving to this novel configuration introduced new acoustics questions involving internal reflections, but we show experimental images confirming the intended nodal geometry. Microparticles in "tilted angle" devices display undulating trajectories, where deviation from the straight path increases with particle diameter and with excitation voltage to create the mechanism by which particles are sorted. We show a simplified analytical model by which a "phase space" is constructed to characterize effective particle sorting, and we compare our experimental data to the predictions from that simplified model; precise correlation is not expected and is not observed, but the important physical trends from the model are paralleled in the measured particle trajectories.

  16. Assessment of Preschool Classroom Practices: Application of Q-Sort Methodology

    Science.gov (United States)

    Bracken, Stacey Storch; Fischel, Janet E.

    2006-01-01

    This paper reports on the application of Q-sort methodology to the development of the Preschool Classroom Practices (PCP) Q-sort. The PCP Q-sort was tested in a sample of 66 preschool teachers and assistants. Results demonstrated the existence of a 2-cluster structure within the Q-sort, comprised of Cognitive Development Activities and…

  17. An Exploratory Study of Critical Factors Affecting the Efficiency of Sorting Techniques (Shell, Heap and Treap)

    CERN Document Server

    Folorunso, Olusegun; Salako, Oluwatimilehin

    2012-01-01

    The efficiency of sorting techniques has a significant impact on the overall efficiency of a program. The efficiency of Shell, Heap and Treap sorting techniques in terms of both running time and memory usage was studied, experiments conducted and results subjected to factor analysis by SPSS. The study revealed the main factor affecting these sorting techniques was time taken to sort.

  18. Chromosome Connections: Compelling Clues to Common Ancestry

    Science.gov (United States)

    Flammer, Larry

    2013-01-01

    Students compare banding patterns on hominid chromosomes and see striking evidence of their common ancestry. To test this, human chromosome no. 2 is matched with two shorter chimpanzee chromosomes, leading to the hypothesis that human chromosome 2 resulted from the fusion of the two shorter chromosomes. Students test that hypothesis by looking for…

  19. Development of the Adolescent and Young Adult Activity Card Sort.

    Science.gov (United States)

    Berg, Christine; McCollum, Mary; Cho, Esther; Jason, Dawn

    2015-10-01

    Emerging adulthood defines transition to employment, higher education, and domestic life. This study describes the development of an assessment of self-reported participation in a range of age-appropriate activities. Item selection was established from literature review, feedback from youth and professionals, the former Adolescent Activity Card Sort (AACS), and the original Activity Card Sort (ACS). Iterative item selection occurred with three separate samples of emerging adults and six professionals. Test-retest reliability was evaluated. The Adolescent and Young Adult Activity Card Sort (AYA-ACS) consists of chores (11 items), leisure (13), social (10), health and fitness (9), work (10), education (8), and parenting (9). Test-retest reliability showed significant moderate to substantial Kappa agreement (.48-.85) for all domains except parenting (κ = .15). This preliminary study describes the development of the AYA-ACS to be used with individuals who encounter challenges when transitioning to young adulthood. PMID:27505902

  20. On-Line Sorting Maturity of Cherry Tomato Bymachine Vision

    Science.gov (United States)

    Zhang, Yinglong; Yin, Xiaoping; Xu, Tongyu; Zhao, Jiewen

    The cherry tomatoes online sorting according to their maturity is an important procedure after harvest. This research proposed an automated cherry tomato grading system base on machine vision. Three images of different angles are obtained from each cherry tomato, allowing the inspection of approximately 90% of the fruit surface. 9 features were extracted from the one cherry tomato images. In order to distinguish into three grades (immature, half ripe and ripe), Principal component analysis (PCA) and linear discrimination analysis (LDA) were used to analyze the features. The PCA results show that ripe cherry tomatoes are distinguished from immature and half ripe ones. 414 cherry tomatoes were tested by the online sorting system. The overall accuracy was up to 94.9%. Furthermore, the grading speed of the sorting line reaches 7 cherry tomatoes per second which meet the actual demand of many farms.

  1. Sorting, Searching, and Simulation in the MapReduce Framework

    DEFF Research Database (Denmark)

    Goodrich, Michael T.; Sitchinava, Nodari; Zhang, Qin

    2011-01-01

    usefulness of our approach by designing and analyzing efficient MapReduce algorithms for fundamental sorting, searching, and simulation problems. This study is motivated by a goal of ultimately putting the MapReduce framework on an equal theoretical footing with the well-known PRAM and BSP parallel...... models, which would benefit both the theory and practice of MapReduce algorithms. We describe efficient MapReduce algorithms for sorting, multi-searching, and simulations of parallel algorithms specified in the BSP and CRCW PRAM models. We also provide some applications of these results to problems in...... parallel computational geometry for the MapReduce framework, which result in efficient MapReduce algorithms for sorting, 2- and 3-dimensional convex hulls, and fixed-dimensional linear programming. For the case when mappers and reducers have a memory/message-I/O size of M = (N), for a small constant > 0...

  2. Undulator field correction by in-situ sorting

    International Nuclear Information System (INIS)

    A novel field-correction method for insertion devices called in-situ sorting has been developed. It is based on a rearrangement of magnet blocks with an analysis of the magnetic data measured for the total device after assembly instead of that for each magnet block before assembly. The field integral at each magnet pole obtained from the magnetic distribution determines how to exchange or flip magnet blocks to reduce both the phase error and multipole components of the field integral. The practical results of the in-situ sorting used for a field correction of an in-vacuum undulator are shown to reveal the validity of the in-situ sorting

  3. Amplitude sorting of oscillatory burst signals by sampling

    Science.gov (United States)

    Davis, Thomas J.

    1977-01-01

    A method and apparatus for amplitude sorting of oscillatory burst signals is described in which the burst signal is detected to produce a burst envelope signal and an intermediate or midportion of such envelope signal is sampled to provide a sample pulse output. The height of the sample pulse is proportional to the amplitude of the envelope signal and to the maximum burst signal amplitude. The sample pulses are fed to a pulse height analyzer for sorting. The present invention is used in an acoustic emission testing system to convert the amplitude of the acoustic emission burst signals into sample pulse heights which are measured by a pulse height analyzer for sorting the pulses in groups according to their height in order to identify the material anomalies in the test material which emit the acoustic signals.

  4. Mechanisms for photon sorting based on slit-groove arrays

    Science.gov (United States)

    Villate-Guío, F.; Martín-Moreno, L.; de León-Pérez, F.

    2015-01-01

    Mechanisms for one-dimensional photon sorting are theoretically studied in the framework of a coupled-mode method. The considered system is a nanopatterned structure composed of two different pixels drilled on the surface of a thin gold layer. Each pixel consists of a slit-groove array designed to squeeze a large fraction of the incident light into the central slit. The Double-Pixel is optimized to resolve two different frequencies in the near infrared. This system shows high transmission efficiencies and a small crosstalk. It is found that the response of the system strongly depends on the effective area shared by overlapping pixels. According to such degree of overlap, photon sorting can be achieved within three different regimes, which are discussed in detail. Optimal photon-sorting efficiencies are obtained for a moderate number of grooves that overlap with grooves of the neighbor pixel. These results could be applied to both optical and infrared detectors.

  5. Mechanisms for photon sorting based on slit-groove arrays

    CERN Document Server

    Villate-Guío, F; de León-Pérez, F

    2014-01-01

    Mechanisms for one-dimensional photon sorting are theoretically studied in the framework of a couple mode method. The considered system is a nanopatterned structure composed of two different pixels drilled on the surface of a thin gold layer. Each pixel consists of a slit-groove array designed to squeeze a large fraction of the incident light into the central slit. The Double-Pixel is optimized to resolve two different frequencies in the near infrared. This system shows a high transmission efficiency and a small crosstalk. Its response is found to strongly depend on the effective area shared by overlapping pixels. Three different regimes for the process of photon sorting are identified and the main physical trends underneath in such regimes are unveiled. Optimal efficiencies for the photon sorting are obtained for a moderate number of grooves that overlap with grooves of the neighbor pixel. Results could be applied to optical and infrared detectors.

  6. Cholesterol-induced protein sorting: an analysis of energetic feasibility

    DEFF Research Database (Denmark)

    Lundbaek, J A; Andersen, O S; Werge, T;

    2003-01-01

    transmembrane domain (TMD). M. S. Bretscher and S. Munro (SCIENCE: 261:1280-1281, 1993) therefore proposed a physical sorting mechanism based on the hydrophobic match between the proteins' TMD and the bilayer thickness, in which cholesterol would regulate protein sorting by increasing the lipid bilayer...... thickness. In this model, Golgi proteins with short TMDs would be excluded from cholesterol-enriched domains (lipid rafts) that are incorporated into transport vesicles destined for the plasma membrane. Although attractive, this model remains unproven. We therefore evaluated the energetic feasibility...... thickness per se, however, have only a modest effect on sorting; the major effect arises because cholesterol changes also the bilayer material properties, which augments the energetic penalty for incorporating short TMDs into cholesterol-enriched domains. We conclude that cholesterol-induced changes...

  7. X-chromosome workshop.

    Science.gov (United States)

    Paterson, A D

    1998-01-01

    Researchers presented results of ongoing research to the X-chromosome workshop of the Fifth World Congress on Psychiatric Genetics, covering a wide range of disorders: X-linked infantile spasms; a complex phenotype associated with deletions of Xp11; male homosexuality; degree of handedness; bipolar affective disorder; schizophrenia; childhood onset psychosis; and autism. This report summarizes the presentations, as well as reviewing previous studies. The focus of this report is on linkage findings for schizophrenia and bipolar disorder from a number of groups. For schizophrenia, low positive lod scores were obtained for markers DXS991 and DXS993 from two studies, although the sharing of alleles was greatest from brother-brother pairs in one study, and sister-sister in the other. Data from the Irish schizophrenia study was also submitted, with no strong evidence for linkage on the X chromosome. For bipolar disease, following the report of a Finnish family linked to Xq24-q27, the Columbia group reported some positive results for this region from 57 families, however, another group found no evidence for linkage to this region. Of interest, is the clustering of low positive linkage results that point to regions for possible further study. PMID:9686435

  8. Sl: many-sorted logic based programming language

    Energy Technology Data Exchange (ETDEWEB)

    David, G.; Sarkozy, A.

    1981-01-01

    The authors wished to describe, specify, and prove correctness and to synthesize sequential or parallel programs, especially microprograms. In order to describe a computer system which executes the program to be proved, one needs tools to reflect the inhomogeneous data structures of computer systems and the same of programs, as well as for the transformations (i.e. instructions, functions) defined on them. Because the typical data structures are both homogenous (vectors, arrays) and inhomogeneous ones they had to choose a many-sorted logic as a base for further extension as a programming language. Many-sorted logic was modified for logic programming purposes. 9 references.

  9. Excitation-energy sorting in superfluid fission dynamics

    Directory of Open Access Journals (Sweden)

    Schmidt K.-H.

    2010-10-01

    Full Text Available It is now well established that at moderate excitation energies the nucleus temperature does not vary with increasing excitation energy. We show that, as a consequence, two nuclei with different temperatures brought into contact show a rather surprising energy-sorting mechanism where the hotter nucleus transfers all its excitation energy to the colder one. The scission configuration of the fission process offers a unique possibility to observe this phenomenon. The energy-sorting mechanism is clearly reflected by the mean number of prompt neutrons as a function of the fragment mass and by the dependence of the local even-odd effect with mass asymmetry.

  10. Finding all sorting tandem duplication random loss operations

    DEFF Research Database (Denmark)

    Bernt, Matthias; Chen, Kuan Yu; Chen, Ming Chiang;

    2011-01-01

    A tandem duplication random loss (TDRL) operation duplicates a contiguous segment of genes, followed by the random loss of one copy of each of the duplicated genes. Although the importance of this operation is founded by several recent biological studies, it has been investigated only rarely from...... a theoretical point of view. Of particular interest are sorting TDRLs which are TDRLs that, when applied to a permutation representing a genome, reduce the distance towards another given permutation. The identification of sorting genome rearrangement operations in general is a key ingredient of many algorithms...

  11. Excitation-energy sorting in superfluid fission dynamics

    International Nuclear Information System (INIS)

    It is now well established that at moderate excitation energies the nucleus temperature does not vary with increasing excitation energy. We show that, as a consequence, two nuclei with different temperatures brought into contact show a rather surprising energy-sorting mechanism where the hotter nucleus transfers all its excitation energy to the colder one. The scission configuration of the fission process offers a unique possibility to observe this phenomenon. The energy-sorting mechanism is clearly reflected by the mean number of prompt neutrons as a function of the fragment mass and by the dependence of the local even-odd effect with mass asymmetry. (authors)

  12. Management status of precisions of FACSAria and of its sorting

    International Nuclear Information System (INIS)

    FACSAria (Becton, Dickinson and Co.), a fluorescence-activated cell sorter, was introduced in National Institute of Radiological Sciences (NIRS) in 2005 as a cooperatively usable equipment, and was scarcely utilized because of complexity of its setup despite weekly/monthly/yearly maintenance. However, on occasion that the personnel in charge had a training of its fundamentals in 2007, its use has been increased along the services provided. This report describes about the FACSAria concerning its maintenance, sorting mechanic, precisions, and possible troubles for its use. Maintenance involves the individual user's cleaning after usage by washing flow-cell with FACS-Clean; weekly maintenance to rinse the inner part and electrode of the equipment; monthly, precision management with Ultra Rainbow Beads to check the laser delay as well as weekly one; and 2 times yearly for conservation and confirmation of usable environment with viable cells. FACSAria has functions of 2- and 4-way sorting and optional automated cell deposition unit (ACDU) for sorting the desired number of cells into 6-384 wells. Before sorting, drop delay, the time between laser hit point of a cell and break-off point, is setup, for which confirmation, AccuDrop Beads is used for laser excitement for analysis of given image. For sort precision, there are such parameters of sorting as purity, yield, single cell, initial and fine tune. Characteristic FACSAria functions are sorting of cells of the desired number, of different fluorescent cells, and of a desired cell pickup at high speed. In this report, the first was examined for precision with the Beads and found necessary for more data accumulation because of 70-80% recovery of setup values. In addition, the first was also confirmed using CHO-K1 cells irradiated by 0.1-1.0 and 1.2-7 Gy X-ray, which were sorted so as to seed the desired number of cells to form 100 colonies. Resultant survival curve at low dose of <1 Gy of hyper-radiosensitive cells was

  13. Sorting of bed load sediment by flow in meander bends.

    Science.gov (United States)

    Parker, G.; Andrews, E.D.

    1985-01-01

    Equilibrium sorting of coarse mobile bed load sediment in meander bends is considered. A theory of two-dimensional bed load transport of graded material, including the effects of gravity on lateral slopes and secondary currents, is developed. This theory is coupled with a simple tratement of flow in bends, an analytically determined bend shape, and the condition of continuity of each grain size range in transport to describe sorting. The theory indicates that the locus of coarse sediment shifts from the inside bank to the outside bank near the bend apex, as is observed.-Authors

  14. Decision trees with minimum average depth for sorting eight elements

    KAUST Repository

    AbouEisha, Hassan

    2015-11-19

    We prove that the minimum average depth of a decision tree for sorting 8 pairwise different elements is equal to 620160/8!. We show also that each decision tree for sorting 8 elements, which has minimum average depth (the number of such trees is approximately equal to 8.548×10^326365), has also minimum depth. Both problems were considered by Knuth (1998). To obtain these results, we use tools based on extensions of dynamic programming which allow us to make sequential optimization of decision trees relative to depth and average depth, and to count the number of decision trees with minimum average depth.

  15. Cell wall sorting of lipoproteins in Staphylococcus aureus.

    OpenAIRE

    Navarre, W W; Daefler, S; Schneewind, O

    1996-01-01

    Many surface proteins are thought to be anchored to the cell wall of gram-positive organisms via their C termini, while the N-terminal domains of these molecules are displayed on the bacterial surface. Cell wall anchoring of surface proteins in Staphylococcus aureus requires both an N-terminal leader peptide and a C-terminal cell wall sorting signal. By fusing the cell wall sorting of protein A to the C terminus of staphylococcal beta-lactamase, we demonstrate here that lipoproteins can also ...

  16. Optimal sorting method and application to SSRF booster dipoles

    Institute of Scientific and Technical Information of China (English)

    2008-01-01

    As the dipoles of SSRF booster are powered in series, the magnet field error varies from magnet to magnet and results in bad beam quality. Sorting and installing magnets according to the measured field errors so that the errors on different magnets are partially compensated with each other, has been the easiest way in many cases to reduce the detrimental effects of the errors without introducing complications. Based on the magnet field measurement results, we investigated and implemented the sorting of dipoles using a method mixed by local cancellation and simulated annealing, and it's found to be quite effective.

  17. Cohesin in determining chromosome architecture

    Energy Technology Data Exchange (ETDEWEB)

    Haering, Christian H., E-mail: christian.haering@embl.de [Cell Biology and Biophysics Unit, European Molecular Biology Laboratory (EMBL), Heidelberg (Germany); Jessberger, Rolf, E-mail: rolf.jessberger@tu-dresden.de [Institute of Physiological Chemistry, Dresden University of Technology, Dresden (Germany)

    2012-07-15

    Cells use ring-like structured protein complexes for various tasks in DNA dynamics. The tripartite cohesin ring is particularly suited to determine chromosome architecture, for it is large and dynamic, may acquire different forms, and is involved in several distinct nuclear processes. This review focuses on cohesin's role in structuring chromosomes during mitotic and meiotic cell divisions and during interphase.

  18. Causes of oncogenic chromosomal translocation

    OpenAIRE

    Aplan, Peter D.

    2005-01-01

    Non-random chromosomal translocations are frequently associated with a variety of cancers, especially hematologic malignancies and childhood sarcomas In addition to their diagnostic utility, chromosomal translocations are increasingly being used in the clinic to guide therapeutic decisions. However, the mechanisms which cause these translocations remain poorly understood. Illegit...

  19. Genetics Home Reference: ring chromosome 20 syndrome

    Science.gov (United States)

    ... 3 links) Encyclopedia: Chromosome Encyclopedia: Epilepsy Health Topic: Epilepsy Genetic and Rare Diseases Information Center (1 link) Ring chromosome 20 Additional NIH Resources (2 links) National Human Genome Research Institute: Chromosome Abnormalities National Institute of ...

  20. Genetics Home Reference: ring chromosome 14 syndrome

    Science.gov (United States)

    ... Encyclopedia: Chromosome Health Topic: Developmental Disabilities Health Topic: Epilepsy Genetic and Rare Diseases Information Center (1 link) Ring chromosome 14 Additional NIH Resources (2 links) National Human Genome Research Institute: Chromosome Abnormalities National Institute of ...

  1. Localization of an EGF receptor in purified chromosomes from A431 and lymphoblast cells

    International Nuclear Information System (INIS)

    Condensed chromosomes from mitotic cells of A431 and lymphoblast GM131 cells were purified by a flow cytometric sorting and collected directly onto nitrocellulose discs. The blots containing purified chromosomes from A431 cells were then hybridized against iodinated protein ligands. Positive autoradiographic signals were obtained from 125I-epidermal growth factor (EGF), 125I-calmodulin(CAM)-IgG and 125I-number528 monoclonal IgG against EGF receptor, but not from 125I-CAM. Binding of 125I-EGF to the purified chromosomes on the nitrocellulose was specific and reversible upon the addition of excess unlabeled EGF to the hybridization solutions. Blots containing the purified chromosomes of lymphoblast cells gave positive signals for 125I-CAM-IgG, while 125I-CAM signals were not detected. Control experiments showed no detectable contamination from A431 membrane EGF receptor in the purified chromosomal fraction, as demonstrated by the absence of EGF receptor autophosphorylation and the absence of a 125I-EGF hybridization signal in the supernatant solution of the purified chromosomal preparation

  2. Karyotype evolution in Rhinolophus bats (Rhinolophidae, Chiroptera) illuminated by cross-species chromosome painting and G-banding comparison.

    Science.gov (United States)

    Mao, Xiuguang; Nie, Wenhui; Wang, Jinhuan; Su, Weiting; Ao, Lei; Feng, Qing; Wang, Yingxiang; Volleth, Marianne; Yang, Fengtang

    2007-01-01

    Rhinolophus (Rhinolophidae) is the second most speciose genus in Chiroptera and has extensively diversified diploid chromosome numbers (from 2n = 28 to 62). In spite of many attempts to explore the karyotypic evolution of this genus, most studies have been based on conventional Giemsa staining rather than G-banding. Here we have made a whole set of chromosome-specific painting probes from flow-sorted chromosomes of Aselliscus stoliczkanus (Hipposideridae). These probes have been utilized to establish the first genome-wide homology maps among six Rhinolophus species with four different diploid chromosome numbers (2n = 36, 44, 58, and 62) and three species from other families: Rousettus leschenaulti (2n = 36, Pteropodidae), Hipposideros larvatus (2n = 32, Hipposideridae), and Myotis altarium (2n = 44, Vespertilionidae) by fluorescence in situ hybridization. To facilitate integration with published maps, human paints were also hybridized to A. stoliczkanus chromosomes. Our painting results substantiate the wide occurrence of whole-chromosome arm conservation in Rhinolophus bats and suggest that Robertsonian translocations of different combinations account for their karyotype differences. Parsimony analysis using chromosomal characters has provided some new insights into the Rhinolophus ancestral karyotype and phylogenetic relationships among these Rhinolophus species so far studied. In addition to Robertsonian translocations, our results suggest that whole-arm (reciprocal) translocations involving multiple non-homologous chromosomes as well could have been involved in the karyotypic evolution within Rhinolophus, in particular those bats with low and medium diploid numbers. PMID:17899409

  3. Bacterial chromosome organization and segregation.

    Science.gov (United States)

    Badrinarayanan, Anjana; Le, Tung B K; Laub, Michael T

    2015-01-01

    If fully stretched out, a typical bacterial chromosome would be nearly 1 mm long, approximately 1,000 times the length of a cell. Not only must cells massively compact their genetic material, but they must also organize their DNA in a manner that is compatible with a range of cellular processes, including DNA replication, DNA repair, homologous recombination, and horizontal gene transfer. Recent work, driven in part by technological advances, has begun to reveal the general principles of chromosome organization in bacteria. Here, drawing on studies of many different organisms, we review the emerging picture of how bacterial chromosomes are structured at multiple length scales, highlighting the functions of various DNA-binding proteins and the impact of physical forces. Additionally, we discuss the spatial dynamics of chromosomes, particularly during their segregation to daughter cells. Although there has been tremendous progress, we also highlight gaps that remain in understanding chromosome organization and segregation. PMID:26566111

  4. Retromer Binds the FANSHY Sorting Motif in SorLA to Regulate Amyloid Precursor Protein Sorting and Processing

    DEFF Research Database (Denmark)

    Fjorback, Anja W; Seaman, Matthew; Gustafsen, Camilla;

    2012-01-01

    levels of retromer proteins are altered in AD. Here we report that sorLA and retromer functionally interact in neurons to control trafficking and amyloidogenic processing of APP. We have identified a sequence (FANSHY) in the cytoplasmic domain of sorLA that is recognized by the VPS26 subunit of the......sorLA is a sorting receptor for amyloid precursor protein (APP) genetically linked to Alzheimer's disease (AD). Retromer, an adaptor complex in the endosome-to-Golgi retrieval pathway, has been implicated in APP transport because retromer deficiency leads to aberrant APP sorting and processing and...

  5. Radiation-induced chromosome aberrations in cell populations from rat tracheal epithelium

    International Nuclear Information System (INIS)

    To determine cells at risk in the respiratory tract for the induction of cancer, it is essential to know not only the dose of toxic agent to the cells but also the sensitivity of each cell type to the agent. The purpose of this study is to define the radiation sensitivity of cells in the airway epithelium of the rat as the first step in determining the cells at risk for cancer induction by radiation. Tracheal epithelial cells were isolated, sorted by flow cytometry, grown in defined medium and exposed to graded doses of X rays. Survival and the frequency of chromosome aberrations were determined in the total cell population, in the sorted secretary and in the sorted basal cells. There was no difference in radiation-induced cytotoxicity of each cell type. The frequency of chromosome aberrations was determined by linear regression analysis and found to be 0.37 ± 0.01 aberrations/cell/Gy for the unsorted cells and 0.26 ± 0.02 for the sorted secretary cells. Because of the low number and cloning efficiency of basal cells, no data on X-ray-induced chromosome aberrations in these cells is available at the present time. There was a linear decrease in the chromatid-type aberration frequency as a function of time after the radiation exposure. The data suggest that, in terms of radiation sensitivity, all three cell populations are very similar. Thus, if there are differences in the response to a toxic agent such as radon, the differences should reflect differences in radiation dose to the cells. (author)

  6. Exploring the tertiary gene pool of bread wheat: sequence assembly and analysis of chromosome 5M(g) of Aegilops geniculata.

    Science.gov (United States)

    Tiwari, Vijay K; Wang, Shichen; Danilova, Tatiana; Koo, Dal Hoe; Vrána, Jan; Kubaláková, Marie; Hribova, Eva; Rawat, Nidhi; Kalia, Bhanu; Singh, Narinder; Friebe, Bernd; Doležel, Jaroslav; Akhunov, Eduard; Poland, Jesse; Sabir, Jamal S M; Gill, Bikram S

    2015-11-01

    Next-generation sequencing (NGS) provides a powerful tool for the discovery of important genes and alleles in crop plants and their wild relatives. Despite great advances in NGS technologies, whole-genome shotgun sequencing is cost-prohibitive for species with complex genomes. An attractive option is to reduce genome complexity to a single chromosome prior to sequencing. This work describes a strategy for studying the genomes of distant wild relatives of wheat by isolating single chromosomes from addition or substitution lines, followed by chromosome sorting using flow cytometry and sequencing of chromosomal DNA by NGS technology. We flow-sorted chromosome 5M(g) from a wheat/Aegilops geniculata disomic substitution line [DS5M(g) (5D)] and sequenced it using an Illumina HiSeq 2000 system at approximately 50 × coverage. Paired-end sequences were assembled and used for structural and functional annotation. A total of 4236 genes were annotated on 5M(g) , in close agreement with the predicted number of genes on wheat chromosome 5D (4286). Single-gene FISH indicated no major chromosomal rearrangements between chromosomes 5M(g) and 5D. Comparing chromosome 5M(g) with model grass genomes identified synteny blocks in Brachypodium distachyon, rice (Oryza sativa), sorghum (Sorghum bicolor) and barley (Hordeum vulgare). Chromosome 5M(g) -specific SNPs and cytogenetic probe-based resources were developed and validated. Deletion bin-mapped and ordered 5M(g) SNP markers will be useful to track 5M-specific introgressions and translocations. This study provides a detailed sequence-based analysis of the composition of a chromosome from a distant wild relative of bread wheat, and opens up opportunities to develop genomic resources for wild germplasm to facilitate crop improvement. PMID:26408103

  7. ADN et chromosomes

    OpenAIRE

    Hayes, Hélène

    2000-01-01

    Chaque chromosome contient une seule molécule d’ADN. L’ADN déroulé d’un noyau de cellule humaine mesurerait environ 1,8 m : chaque molécule d’ADN est enroulée et compactée en plusieurs étapes, grâce à l’association de différentes protéines, et loge dans le noyau de 6 µm de diamètre. Le degré de condensation de l’ADN est variable selon les régions chromosomiques et les régions les moins condensées sont les plus riches en gènes. L’ADN est composé d’une variété de séquences codantes ou non et ré...

  8. X-Chromosome dosage compensation.

    Science.gov (United States)

    Meyer, Barbara J

    2005-01-01

    In mammals, flies, and worms, sex is determined by distinctive regulatory mechanisms that cause males (XO or XY) and females (XX) to differ in their dose of X chromosomes. In each species, an essential X chromosome-wide process called dosage compensation ensures that somatic cells of either sex express equal levels of X-linked gene products. The strategies used to achieve dosage compensation are diverse, but in all cases, specialized complexes are targeted specifically to the X chromosome(s) of only one sex to regulate transcript levels. In C. elegans, this sex-specific targeting of the dosage compensation complex (DCC) is controlled by the same developmental signal that establishes sex, the ratio of X chromosomes to sets of autosomes (X:A signal). Molecular components of this chromosome counting process have been defined. Following a common step of regulation, sex determination and dosage compensation are controlled by distinct genetic pathways. C. elegans dosage compensation is implemented by a protein complex that binds both X chromosomes of hermaphrodites to reduce transcript levels by one-half. The dosage compensation complex resembles the conserved 13S condensin complex required for both mitotic and meiotic chromosome resolution and condensation, implying the recruitment of ancient proteins to the new task of regulating gene expression. Within each C. elegans somatic cell, one of the DCC components also participates in the separate mitotic/meiotic condensin complex. Other DCC components play pivotal roles in regulating the number and distribution of crossovers during meiosis. The strategy by which C. elegans X chromosomes attract the condensin-like DCC is known. Small, well-dispersed X-recognition elements act as entry sites to recruit the dosage compensation complex and to nucleate spreading of the complex to X regions that lack recruitment sites. In this manner, a repressed chromatin state is spread in cis over short or long distances, thus establishing the

  9. System of radwaste sorting out physical features and activities

    International Nuclear Information System (INIS)

    Classification of radioactive waste sources in Ukraine is provided. General technological sorting scheme of the RAW of chiefly. Chernobyl origin is offered. Some measures to treat short-lived and long-lived High-Level Waste, Intermediate-Active Waste and Low-Level Active Waste in the Center for waste treatment and disposal are offered. 4 refs., 2 tab., 8 figs

  10. AMDLIBGZ, IBM 360 Subroutine Library for Data Processing, Graphics, Sorting

    International Nuclear Information System (INIS)

    Description of problem or function: AMDLIBGZ is a subset of the IBM 360 Subroutine Library at the Applied Mathematics Division at Argonne National Laboratory. This subset includes library categories G-Z: Identification/Description: G552S F RANF: Random number generator; J952S F YOLYPLOT: CalComp plots; J955S P GRAF: Prints a graph of points on line printer; K250S A1: Core to core conversion; K251S A HEXINP: Hexadecimal input for PL/I programs; K252S A HEXOUT: Hexadecimal output conv. PL/I programs; M101S F SORT: Algebraic sort; M150S F CSORT: Algebraic sort; M151S P2 ANLKWIC: KWIC sort; M250S A SMALLIST: Squeezes assembler listing to 8 x 11; N251S A ABEND: Calls ABEND dump; Q052S A CLOCK: Time; Q053S A COPYAGO: Copy load module from tape to disk; Q054S A DATE: Current date in form MM/DD/YY; Q055S A TIME: Time (24 hour clock) in EBCDIC HH.MM.SS; Z013S F: Variable metric minimization; Z057S A LOCF: Locate machine addresses of variables; Z071S A ALLOC: Allocate LCS for FORTRAN programs; Z074S A ANLMNP: Exponent and mantissa manipulative functs.

  11. Combining card sorts and in-depth interviews

    OpenAIRE

    Saunders, MNK

    2012-01-01

    Trust research invariably asks questions about sensitive issues, highlighting the need to build rapport and trust between the researcher and participant. It may also be necessary to ensure participants are not sensitized to the focus on trust. This chapter outlines the use of a card sort, concurrent with an in-depth interview to help overcome these issues.

  12. Mineral-PET Kimberlite sorting by nuclear-medical technology

    CERN Document Server

    Ballestrero, S; Cafferty, L; Caveney, R; Connell, SH; Cook, M; Dalton, M; Gopal, H; Ives, N; Lee, C A; Mampe, W; Phoku, M; Roodt, A; Sibande, W; Sellschop, J P F; Topkin, J; Unwucholaa, D A

    2010-01-01

    A revolutionary new technology for diamond bearing rock sorting which has its roots in medical-nuclear physics has been taken through a substantial part of the R&D phase. This has led to the construction of the technology demonstrator. Experiments using the technology demonstrator and experiments at a hospital have established the scientific and technological viability of the project.

  13. Local Residential Sorting and Public Goods Provision: A Classroom Demonstration

    Science.gov (United States)

    Brouhle, Keith; Corrigan, Jay; Croson, Rachel; Farnham, Martin; Garip, Selhan; Habodaszova, Luba; Johnson, Laurie Tipton; Johnson, Martin; Reiley, David

    2005-01-01

    This classroom exercise illustrates the Tiebout (1956) hypothesis that residential sorting across multiple jurisdictions leads to a more efficient allocation of local public goods. The exercise places students with heterogeneous preferences over a public good into a single classroom community. A simple voting mechanism determines the level of…

  14. Udpegning af potentielle sorte pletter via floating car data

    DEFF Research Database (Denmark)

    Splid Svendsen, Martin; Tradisauskas, Nerius; Lahrmann, Harry

    2008-01-01

    Formålet med dette paper er at undersøge, om det er muligt at udpege potentielle sorte pletter via floating car data. Der er i projektet udført teoretiske litteraturstudier for at skabe et grundlag for det senere analysearbejde, som danner baggrund for analysearbejdet. Dataene stammer fra Aalborg...

  15. Prediction of N-terminal protein sorting signals

    DEFF Research Database (Denmark)

    Claros, Manuel G.; Brunak, Søren; von Heijne, Gunnar

    1997-01-01

    Recently, neural networks have been applied to a widening range of problems in molecular biology. An area particularly suited to neural-network methods is the identification of protein sorting signals and the prediction of their cleavage sites, as these functional units are encoded by local, line...

  16. Incentives versus sorting in tournaments: evidence from a field experiment

    NARCIS (Netherlands)

    E. Leuven; H. Oosterbeek; J. Sonnemans; B. van der Klaauw

    2011-01-01

    Existing field evidence on rank-order tournaments typically does not allow disentangling incentive and sorting effects. We conduct a field experiment illustrating the confounding effect. Students in an introductory microeconomics course selected themselves into tournaments with low, medium, or high

  17. Getting a "Decent Sort": Key Considerations when Planning for AMH

    Science.gov (United States)

    Canty, Adrienne Brown

    2010-01-01

    In 2008 and 2009, the Edmonton Public Library (EPL), where the author works as an information professional, completed a $6 million CDN (about $5.7 million) RFID conversion project with the installation of automated check-in and sorting equipment at six of its 17 service points. The sorters currently handle about 55% of EPL's system's total…

  18. Sphingolipid trafficking and protein sorting in epithelial cells

    NARCIS (Netherlands)

    Slimane, TA; Hoekstra, D

    2002-01-01

    Sphingolipids represent a minor, but highly dynamic subclass of lipids in all eukaryotic cells. They are involved in functions that range from structural protection to signal transduction and protein sorting, and participate in lipid raft assembly. In polarized epithelial cells, which display an asy

  19. On-chip cell sorting via patterned magnetic traps

    Science.gov (United States)

    Byvank, Tom; Prikockis, Michael; Chen, Aaron; Miller, Brandon; Chalmers, Jeffrey; Sooryakumar, Ratnasingham

    2015-03-01

    Due to their importance in research for the diagnosis and treatment of cancer, numerous schemes have been developed to sort rare cell populations, e.g., circulating tumor cells (CTCs), from a larger ensemble of cells. Here, we improve upon a previously developed microfluidic device (Lab Chip 13, 1172, (2013)) to increase throughput and sorting purity of magnetically labeled cells. The separation mechanism involves controlling magnetic forces by manipulating the magnetic domain structures of embedded permalloy microdisks with weak external fields. These forces move labeled cells from the input flow stream into an adjacent buffer flow stream. Such magnetically activated transfer separates the magnetic entities from their non-magnetic counterparts as the two flow streams split apart and move toward their respective outputs. Purity of the magnetic output is modulated by the withdrawal rate of the non-magnetic output relative to the inputs. A proof of concept shows that CTCs from metastatic breast cancer patients can be sorted, recovered from the device, and confirmed as CTCs using separate immunofluorescence staining and analysis. With further optimizations, the channel could become a useful device for high purity final sorting of enriched patient cell samples.

  20. Improved Sorting-Based Procedure for Integer Programming

    DEFF Research Database (Denmark)

    Dantchev, Stefan

    2002-01-01

    Recently, Cornuéjols and Dawande have considered a special class of 0-1 programs that turns out to be hard for existing IP solvers. One of them is a sorting-based algorithm, based on an idea of Wolsey. In this paper, we show how to improve both the running time and the space requirements...

  1. Automated sorting of glabrous versus pubescent annual canarygrass seeds

    Science.gov (United States)

    An automated imaging system was developed to identify and sort annual canarygrass seeds with the glabrous trait in order to screen bulk amounts of seed to segregate populations for this desirable trait. Glabrous seed is preferred since it does not have the irritating silica hairs that pubescent see...

  2. Empirical Approach to Interpreting Card-Sorting Data

    Science.gov (United States)

    Wolf, Steven F.; Dougherty, Daniel P.; Kortemeyer, Gerd

    2012-01-01

    Since it was first published 30 years ago, the seminal paper of Chi "et al." on expert and novice categorization of introductory problems led to a plethora of follow-up studies within and outside of the area of physics [Cogn. Sci. 5 121 (1981)]. These studies frequently encompass "card-sorting" exercises whereby the participants group problems.…

  3. From Sorting to Learning: Developing Deep Learning in Canadian Schools

    Science.gov (United States)

    Kaser, Linda; Halbert, Judy

    2008-01-01

    Observations in many intermediate and secondary classrooms and interviews with learners indicate that many young people are under-engaged or disengaged with the learning opportunities in their schools. This disengagement of adolescent learners underlines the need for a shift from systems focused on sorting to systems passionate about deep…

  4. Standing surface acoustic wave (SSAW) based multichannel cell sorting

    OpenAIRE

    Ding, Xiaoyun; Lin, Sz-Chin Steven; Lapsley, Michael Ian; Li, Sixing; Guo, Xiang; Chan, Chung Yu Keith; Chiang, I-Kao; Wang, Lin; McCoy, J. Philip; Huang, Tony Jun

    2012-01-01

    We introduce a novel microfluidic device for cell sorting in continuous flow using tunable standing surface acoustic waves. This method allows individual cells to be precisely directed into five different outlet channels in a single step. It is versatile, simple, label-free, non-invasive, and highly controllable.

  5. Chromatid Painting for Chromosomal Inversion Detection Project

    Data.gov (United States)

    National Aeronautics and Space Administration — We propose the continued development of a novel approach to the detection of chromosomal inversions. Transmissible chromosome aberrations (translocations and...

  6. Chromatid Painting for Chromosomal Inversion Detection Project

    Data.gov (United States)

    National Aeronautics and Space Administration — We propose a novel approach to the detection of chromosomal inversions. Transmissible chromosome aberrations (translocations and inversions) have profound genetic...

  7. Development of a two-parameter slit-scan flow cytometer for screening of normal and aberrant chromosomes: application to a karyotype of Sus scrofa domestica (pig)

    Science.gov (United States)

    Hausmann, Michael; Doelle, Juergen; Arnold, Armin; Stepanow, Boris; Wickert, Burkhard; Boscher, Jeannine; Popescu, Paul C.; Cremer, Christoph

    1992-07-01

    Laser fluorescence activated slit-scan flow cytometry offers an approach to a fast, quantitative characterization of chromosomes due to morphological features. It can be applied for screening of chromosomal abnormalities. We give a preliminary report on the development of the Heidelberg slit-scan flow cytometer. Time-resolved measurement of the fluorescence intensity along the chromosome axis can be registered simultaneously for two parameters when the chromosome axis can be registered simultaneously for two parameters when the chromosome passes perpendicularly through a narrowly focused laser beam combined by a detection slit in the image plane. So far automated data analysis has been performed off-line on a PC. In its final performance, the Heidelberg slit-scan flow cytometer will achieve on-line data analysis that allows an electro-acoustical sorting of chromosomes of interest. Interest is high in the agriculture field to study chromosome aberrations that influence the size of litters in pig (Sus scrofa domestica) breeding. Slit-scan measurements have been performed to characterize chromosomes of pigs; we present results for chromosome 1 and a translocation chromosome 6/15.

  8. Mitotic chromosome condensation in vertebrates

    Energy Technology Data Exchange (ETDEWEB)

    Vagnarelli, Paola, E-mail: P.Vagnarelli@ed.ac.uk

    2012-07-15

    Work from several laboratories over the past 10-15 years has revealed that, within the interphase nucleus, chromosomes are organized into spatially distinct territories [T. Cremer, C. Cremer, Chromosome territories, nuclear architecture and gene regulation in mammalian cells, Nat. Rev. Genet. 2 (2001) 292-301 and T. Cremer, M. Cremer, S. Dietzel, S. Muller, I. Solovei, S. Fakan, Chromosome territories-a functional nuclear landscape, Curr. Opin. Cell Biol. 18 (2006) 307-316]. The overall compaction level and intranuclear location varies as a function of gene density for both entire chromosomes [J.A. Croft, J.M. Bridger, S. Boyle, P. Perry, P. Teague,W.A. Bickmore, Differences in the localization and morphology of chromosomes in the human nucleus, J. Cell Biol. 145 (1999) 1119-1131] and specific chromosomal regions [N.L. Mahy, P.E. Perry, S. Gilchrist, R.A. Baldock, W.A. Bickmore, Spatial organization of active and inactive genes and noncoding DNA within chromosome territories, J. Cell Biol. 157 (2002) 579-589] (Fig. 1A, A'). In prophase, when cyclin B activity reaches a high threshold, chromosome condensation occurs followed by Nuclear Envelope Breakdown (NEB) [1]. At this point vertebrate chromosomes appear as compact structures harboring an attachment point for the spindle microtubules physically recognizable as a primary constriction where the two sister chromatids are held together. The transition from an unshaped interphase chromosome to the highly structured mitotic chromosome (compare Figs. 1A and B) has fascinated researchers for several decades now; however a definite picture of how this process is achieved and regulated is not yet in our hands and it will require more investigation to comprehend the complete process. From a biochemical point of view a vertebrate mitotic chromosomes is composed of DNA, histone proteins (60%) and non-histone proteins (40%) [6]. I will discuss below what is known to date on the contribution of these two different classes

  9. Mitotic chromosome condensation in vertebrates

    International Nuclear Information System (INIS)

    Work from several laboratories over the past 10–15 years has revealed that, within the interphase nucleus, chromosomes are organized into spatially distinct territories [T. Cremer, C. Cremer, Chromosome territories, nuclear architecture and gene regulation in mammalian cells, Nat. Rev. Genet. 2 (2001) 292–301 and T. Cremer, M. Cremer, S. Dietzel, S. Muller, I. Solovei, S. Fakan, Chromosome territories—a functional nuclear landscape, Curr. Opin. Cell Biol. 18 (2006) 307–316]. The overall compaction level and intranuclear location varies as a function of gene density for both entire chromosomes [J.A. Croft, J.M. Bridger, S. Boyle, P. Perry, P. Teague,W.A. Bickmore, Differences in the localization and morphology of chromosomes in the human nucleus, J. Cell Biol. 145 (1999) 1119–1131] and specific chromosomal regions [N.L. Mahy, P.E. Perry, S. Gilchrist, R.A. Baldock, W.A. Bickmore, Spatial organization of active and inactive genes and noncoding DNA within chromosome territories, J. Cell Biol. 157 (2002) 579–589] (Fig. 1A, A'). In prophase, when cyclin B activity reaches a high threshold, chromosome condensation occurs followed by Nuclear Envelope Breakdown (NEB) [1]. At this point vertebrate chromosomes appear as compact structures harboring an attachment point for the spindle microtubules physically recognizable as a primary constriction where the two sister chromatids are held together. The transition from an unshaped interphase chromosome to the highly structured mitotic chromosome (compare Figs. 1A and B) has fascinated researchers for several decades now; however a definite picture of how this process is achieved and regulated is not yet in our hands and it will require more investigation to comprehend the complete process. From a biochemical point of view a vertebrate mitotic chromosomes is composed of DNA, histone proteins (60%) and non-histone proteins (40%) [6]. I will discuss below what is known to date on the contribution of these two different

  10. Parallel sort with a ranged, partitioned key-value store in a high perfomance computing environment

    Energy Technology Data Exchange (ETDEWEB)

    Bent, John M.; Faibish, Sorin; Grider, Gary; Torres, Aaron; Poole, Stephen W.

    2016-01-26

    Improved sorting techniques are provided that perform a parallel sort using a ranged, partitioned key-value store in a high performance computing (HPC) environment. A plurality of input data files comprising unsorted key-value data in a partitioned key-value store are sorted. The partitioned key-value store comprises a range server for each of a plurality of ranges. Each input data file has an associated reader thread. Each reader thread reads the unsorted key-value data in the corresponding input data file and performs a local sort of the unsorted key-value data to generate sorted key-value data. A plurality of sorted, ranged subsets of each of the sorted key-value data are generated based on the plurality of ranges. Each sorted, ranged subset corresponds to a given one of the ranges and is provided to one of the range servers corresponding to the range of the sorted, ranged subset. Each range server sorts the received sorted, ranged subsets and provides a sorted range. A plurality of the sorted ranges are concatenated to obtain a globally sorted result.

  11. Waste Sorting Habits by the Community of Kaunas University of Technology, Reasons and Influencing Factors

    Directory of Open Access Journals (Sweden)

    Toma Adomavičiūtė

    2013-01-01

    Full Text Available The article presents the waste management system at Kaunas University of Technology, surveys the waste sorting habits of its community, both students and employees, and analyses the reasons and factors influencing waste sorting and non-sorting. The introduction of a separate paper waste collection system has made it possible to reduce the amount of mixed waste by 25% during the first three months of its functioning. 58% of employees and 45% of students sort some of their waste partly, 23% of employees and 11% of students sort all their waste. 8% of employees and 19% of students sort their waste sometimes. 8% of employees and 24% of students do not sort waste at all. 77% of employees and 66% of students think that the main problem caused by waste generation is pollution of the environment. Therefore willingness to reduce an impact on it is the main reason for sorting, while a lack of conditions to keep separated recyclable refuse and a lack of nearby containers are main factors that are distracting people from source-sorting. Growth of environmental awareness and formation of sorting habits that are transmitted to family members are identified as the strengths. Lack of conditions for sorting (e.g. no place to keep sorted waste at home, insufficiently developed waste collection infrastructure, mistrust in a sorted waste collection system (e.g. belief that sorted waste goes to a landfill, and lack of information are the weaknesses. The opportunities comprise development of a convenient waste collection infrastructure, introduction of economic incentives and rise of further awareness. Identified threats for sorting at the source that discourage source sorting are the following: a developed infrastructure will not satisfy real needs; sorting will not become financially rewarding; improper decisions about a waste management system and waste treatment practices made at the state level, no real use of sorting.DOI: http://dx.doi.org/10.5755/j01.erem.62.4.2954

  12. Gametocidal chromosomes enhancing chromosome aberration in common wheat induced by 5-azacytidine.

    Science.gov (United States)

    Su, W-Y; Cong, W-W; Shu, Y-J; Wang, D; Xu, G-H; Guo, C-H

    2013-01-01

    The gametocidal (Gc) chromosome from Aegilops spp induces chromosome mutation, which is introduced into common wheat as a tool of chromosome manipulation for genetic improvement. The Gc chromosome functions similar to a restriction-modification system in bacteria, in which DNA methylation is an important regulator. We treated root tips of wheat carrying Gc chromosomes with the hypomethylation agent 5-azacytidine; chromosome breakage and micronuclei were observed in these root tips. The frequency of aberrations differed in wheat containing different Gc chromosomes, suggesting different functions inducing chromosome breakage. Gc chromosome 3C caused the greatest degree of chromosome aberration, while Gc chromosome 3C(SAT) and 2C caused only slight chromosome aberration. Gc chromosome 3C induced different degrees of chromosome aberration in wheat varieties Triticum aestivum var. Chinese Spring and Norin 26, demonstrating an inhibition function in common wheat. PMID:23884766

  13. Chromosome conservation in squamate reptiles revealed by comparative chromosome painting

    Czech Academy of Sciences Publication Activity Database

    Giovannotti, M.; Pokorná, Martina; Kratochvíl, L.; Caputo, V.; Olmo, E.; Ferguson-Smith, M. A.; Rens, W.

    Manchester : ICCS, 2011. 78-78. [Intarnational Chromosome Conference /18./. 29.08.2011-02.09.2011, Manchester] Institutional research plan: CEZ:AV0Z50450515 Keywords : squamate reptiles Subject RIV: EG - Zoology

  14. Numerous transitions of sex chromosomes in Diptera.

    Directory of Open Access Journals (Sweden)

    Beatriz Vicoso

    2015-04-01

    Full Text Available Many species groups, including mammals and many insects, determine sex using heteromorphic sex chromosomes. Diptera flies, which include the model Drosophila melanogaster, generally have XY sex chromosomes and a conserved karyotype consisting of six chromosomal arms (five large rods and a small dot, but superficially similar karyotypes may conceal the true extent of sex chromosome variation. Here, we use whole-genome analysis in 37 fly species belonging to 22 different families of Diptera and uncover tremendous hidden diversity in sex chromosome karyotypes among flies. We identify over a dozen different sex chromosome configurations, and the small dot chromosome is repeatedly used as the sex chromosome, which presumably reflects the ancestral karyotype of higher Diptera. However, we identify species with undifferentiated sex chromosomes, others in which a different chromosome replaced the dot as a sex chromosome or in which up to three chromosomal elements became incorporated into the sex chromosomes, and others yet with female heterogamety (ZW sex chromosomes. Transcriptome analysis shows that dosage compensation has evolved multiple times in flies, consistently through up-regulation of the single X in males. However, X chromosomes generally show a deficiency of genes with male-biased expression, possibly reflecting sex-specific selective pressures. These species thus provide a rich resource to study sex chromosome biology in a comparative manner and show that similar selective forces have shaped the unique evolution of sex chromosomes in diverse fly taxa.

  15. Familial transmission of a deletion of chromosome 21 derived from a translocation between chromosome 21 and an inverted chromosome 22.

    Science.gov (United States)

    Aviv, H; Lieber, C; Yenamandra, A; Desposito, F

    1997-06-27

    Chromosome analysis of a newborn boy with Down syndrome resulted in the identification of a family with an unusual derivative chromosome 22. The child has 46 chromosomes, including two chromosomes 21, one normal chromosome 22, and a derivative chromosome 22. Giemsa banding and fluorescent in situ hybridization (FISH) studies show that the derivative chromosome is chromosome 22 with evidence of both paracentric and pericentric inversions, joined to the long arm of chromosome 21 from 21q21.2 to qter. The rearrangement results in partial trisomy 21 extending from 21q21.2 to 21q terminus in the patient. The child's mother, brother, maternal aunt, and maternal grandmother are all carriers of the derivative chromosome. All have 45 chromosomes, with one normal chromosome 21, one normal chromosome 22, and the derivative chromosome 22. The rearrangement results in the absence of the short arm, the centromere, and the proximal long arm of chromosome 21 (del 21pter-21q21.2) in carriers. Carriers of the derivative chromosome in this family have normal physical appearance, mild learning disabilities and poor social adjustment. PMID:9182781

  16. Meiosis and chromosome painting of sex chromosome systems in Ceboidea.

    Science.gov (United States)

    Mudry, M D; Rahn, I M; Solari, A J

    2001-06-01

    The identity of the chromosomes involved in the multiple sex system of Alouatta caraya (Aca) and the possible distribution of this system among other Ceboidea were investigated by chromosome painting of mitotic cells from five species and by analysis of meiosis at pachytene in two species. The identity of the autosome #7 (X2) involved in the multiple system of Aca and its breakage points were demonstrated by both meiosis and chromosome painting. These features are identical to those described by Consigliere et al. [1996] in Alouatta seniculus sara (Assa) and Alouatta seniculus arctoidea (Asar). This multiple system was absent in the other four Ceboidea species studied here. However, data from the literature strongly suggest the presence of this multiple in other members of this genus. The presence of this multiple system among several species and subspecies that show high levels of chromosome rearrangements may suggest a special selective value of this multiple. The meiotic features of the sex systems of Aca and Cebus apella paraguayanus (Cap) are strikingly different at pachytene, as the latter system is similar to the sex pair of man and other primates. The relatively large genetic distances between species presently showing this multiple system suggest that its origin is not recent. Other members of the same genus should be investigated at meiosis and by chromosome painting in order to know the extent and distribution of this complex sex-chromosome system. PMID:11376445

  17. Buoyancy-activated cell sorting using targeted biotinylated albumin microbubbles.

    Directory of Open Access Journals (Sweden)

    Yu-Ren Liou

    Full Text Available Cell analysis often requires the isolation of certain cell types. Various isolation methods have been applied to cell sorting, including fluorescence-activated cell sorting and magnetic-activated cell sorting. However, these conventional approaches involve exerting mechanical forces on the cells, thus risking cell damage. In this study we applied a novel isolation method called buoyancy-activated cell sorting, which involves using biotinylated albumin microbubbles (biotin-MBs conjugated with antibodies (i.e., targeted biotin-MBs. Albumin MBs are widely used as contrast agents in ultrasound imaging due to their good biocompatibility and stability. For conjugating antibodies, biotin is conjugated onto the albumin MB shell via covalent bonds and the biotinylated antibodies are conjugated using an avidin-biotin system. The albumin microbubbles had a mean diameter of 2 μm with a polydispersity index of 0.16. For cell separation, the MDA-MB-231 cells are incubated with the targeted biotin-MBs conjugated with anti-CD44 for 10 min, centrifuged at 10 g for 1 min, and then allowed 1 hour at 4 °C for separation. The results indicate that targeted biotin-MBs conjugated with anti-CD44 antibodies can be used to separate MDA-MB-231 breast cancer cells; more than 90% of the cells were collected in the MB layer when the ratio of the MBs to cells was higher than 70:1. Furthermore, we found that the separating efficiency was higher for targeted biotin-MBs than for targeted avidin-incorporated albumin MBs (avidin-MBs, which is the most common way to make targeted albumin MBs. We also demonstrated that the recovery rate of targeted biotin-MBs was up to 88% and the sorting purity was higher than 84% for a a heterogenous cell population containing MDA-MB-231 cells (CD44(+ and MDA-MB-453 cells (CD44-, which are classified as basal-like breast cancer cells and luminal breast cancer cells, respectively. Knowing that the CD44(+ is a commonly used cancer

  18. Buoyancy-activated cell sorting using targeted biotinylated albumin microbubbles.

    Science.gov (United States)

    Liou, Yu-Ren; Wang, Yu-Hsin; Lee, Chia-Ying; Li, Pai-Chi

    2015-01-01

    Cell analysis often requires the isolation of certain cell types. Various isolation methods have been applied to cell sorting, including fluorescence-activated cell sorting and magnetic-activated cell sorting. However, these conventional approaches involve exerting mechanical forces on the cells, thus risking cell damage. In this study we applied a novel isolation method called buoyancy-activated cell sorting, which involves using biotinylated albumin microbubbles (biotin-MBs) conjugated with antibodies (i.e., targeted biotin-MBs). Albumin MBs are widely used as contrast agents in ultrasound imaging due to their good biocompatibility and stability. For conjugating antibodies, biotin is conjugated onto the albumin MB shell via covalent bonds and the biotinylated antibodies are conjugated using an avidin-biotin system. The albumin microbubbles had a mean diameter of 2 μm with a polydispersity index of 0.16. For cell separation, the MDA-MB-231 cells are incubated with the targeted biotin-MBs conjugated with anti-CD44 for 10 min, centrifuged at 10 g for 1 min, and then allowed 1 hour at 4 °C for separation. The results indicate that targeted biotin-MBs conjugated with anti-CD44 antibodies can be used to separate MDA-MB-231 breast cancer cells; more than 90% of the cells were collected in the MB layer when the ratio of the MBs to cells was higher than 70:1. Furthermore, we found that the separating efficiency was higher for targeted biotin-MBs than for targeted avidin-incorporated albumin MBs (avidin-MBs), which is the most common way to make targeted albumin MBs. We also demonstrated that the recovery rate of targeted biotin-MBs was up to 88% and the sorting purity was higher than 84% for a a heterogenous cell population containing MDA-MB-231 cells (CD44(+)) and MDA-MB-453 cells (CD44-), which are classified as basal-like breast cancer cells and luminal breast cancer cells, respectively. Knowing that the CD44(+) is a commonly used cancer-stem-cell biomarker, our

  19. Chromosome fragility in Freemartin cattle

    Directory of Open Access Journals (Sweden)

    V. Barbieri

    2010-04-01

    Full Text Available The aim of the present study was to verify chromosome fragility in freemartin cattle using chromosome aberration (CA and sister chromatid exchange (SCE tests. A total of eighteen co-twins were investigated. Fourteen animals were identified as cytogenetically chimeric (2n=60, XX/XY while 4 were classified as normal. Freemartin cattle showed a higher percentage of aneuploid cells (18.64% and highly significant statistical differences (P < 0.001 in mean values of gaps (4.53 ± 2.05, chromatid breaks (0.26 ± 0.51, and significant statistical differences (P < 0.005 in mean values of chromosome breaks (0.12 ± 0.43 when compared to 10 control animals from single births (aneuploid cells, 11.20%; gaps, 2.01 ± 1.42; chromatid breaks, 0.05 ± 0.22; chromosome breaks, 0.02 ± 0.14.

  20. Generating resources for genomics of wheat homoeologous chromosome group 3: 3AS- and 3DS-specific BAC libraries

    Czech Academy of Sciences Publication Activity Database

    Šafář, Jan; Šimková, Hana; Kubaláková, Marie; Suchánková, Pavla; Čihalíková, Jarmila; Bartoš, Jan; Fiocchetti, F.; Roselli, M.; Gill, B. S.; Doležel, Jaroslav; Lucretti, S.

    2009-01-01

    Roč. 61, 1-2 (2009), s. 151-160. ISSN 0394-9257 R&D Projects: GA ČR GD521/05/H013; GA ČR GA521/06/1723; GA ČR GA521/07/1573; GA MŠk(CZ) LC06004; GA MŠk OC08025 Institutional research plan: CEZ:AV0Z50380511 Keywords : BAC library * Flow sorting * Homoeologous chromosomes Subject RIV: GE - Plant Breeding

  1. Advanced resources for plant genomics: BAC library specific for the short arm of wheat chromosome 1B

    Czech Academy of Sciences Publication Activity Database

    Janda, Jaroslav; Šafář, Jan; Kubaláková, Marie; Bartoš, Jan; Kovářová, Pavlína; Suchánková, Pavla; Pateyron, S.; Čihalíková, Jarmila; Sourdille, P.; Šimková, Hana; Faivre-Rampant, P.; Hřibová, Eva; Bernard, M.; Lukaszewski, A.; Doležel, Jaroslav; Chalhoub, B.

    2006-01-01

    Roč. 47, - (2006), s. 977-986. ISSN 0960-7412 R&D Projects: GA ČR GA521/04/0607; GA ČR GP521/05/P257; GA ČR GD521/05/H013; GA MŠk LC06004 Institutional research plan: CEZ:AV0Z50380511 Keywords : wheat * genomics * chromosome sorting Subject RIV: EB - Genetics ; Molecular Biology Impact factor: 6.565, year: 2006

  2. Methods for chromosome-specific staining

    Science.gov (United States)

    Gray, Joe W.; Pinkel, Daniel

    1995-01-01

    Methods and compositions for chromosome-specific staining are provided. Compositions comprise heterogenous mixtures of labeled nucleic acid fragments having substantially complementary base sequences to unique sequence regions of the chromosomal DNA for which their associated staining reagent is specific. Methods include methods for making the chromosome-specific staining compositions of the invention, and methods for applying the staining compositions to chromosomes.

  3. Chromosome Architecture and Genome Organization

    OpenAIRE

    Giorgio Bernardi

    2015-01-01

    How the same DNA sequences can function in the three-dimensional architecture of interphase nucleus, fold in the very compact structure of metaphase chromosomes and go precisely back to the original interphase architecture in the following cell cycle remains an unresolved question to this day. The strategy used to address this issue was to analyze the correlations between chromosome architecture and the compositional patterns of DNA sequences spanning a size range from a few hundreds to a few...

  4. Chromosome evolution in Neotropical butterflies

    OpenAIRE

    Saura, Anssi; Von Schoultz, Barbara; Saura, Anja O.; Brown, Keith S., Jr.

    2013-01-01

    We list the chromosome numbers for 65 species of Neotropical Hesperiidae and 104 species or subspecies of Pieridae. In Hesperiidae the tribe Pyrrhopygini have a modal n = 28, Eudaminae and Pyrgini a modal n = 31, while Hesperiinae have n = around 29. Among Pieridae, Coliadinae have a strong modal n = 31 and among Pierinae Anthocharidini are almost fixed for n = 15 while Pierini vary with n = 26 as the most common chromosome number. Dismorphiinae show wide variation. We discuss these results i...

  5. An empirical approach to interpreting card-sorting data

    CERN Document Server

    Wolf, Steven F; Kortemeyer, Gerd

    2012-01-01

    Since it was first published 30 years ago, Chi et al.'s seminal paper on expert and novice categorization of introductory problems led to a plethora of follow-up studies within and outside of the area of physics [Chi et al. Cognitive Science 5, 121 - 152 (1981)]. These studies frequently encompass "card-sorting" exercises whereby the participants group problems. While this technique certainly allows insights into problem solving approaches, simple descriptive statistics more often than not fail to find significant differences between experts and novices. In moving beyond descriptive statistics, we describe a novel microscopic approach that takes into account the individual identity of the cards and uses graph theory and models to visualize, analyze, and interpreting problem categorization experiments. We apply these methods to an introductory physics (mechanics) problem categorization experiment, and find that most of the variation in sorting outcome is not due to the sorter being an expert versus a novice, b...

  6. An Automated Sorting System Based on Virtual Instrumentation Techniques

    Directory of Open Access Journals (Sweden)

    Rodica Holonec

    2008-07-01

    Full Text Available The application presented in this paper represents an experimental model and it refers to the implementing of an automated sorting system for pieces of same shape but different sizes and/or colors. The classification is made according to two features: the color and weight of these pieces. The system is a complex combination of NI Vision hardware and software tools, strain gauges transducers, signal conditioning connected to data acquisition boards, motion and control elements. The system is very useful for students to learn and experiment different virtual instrumentation techniques in order to be able to develop a large field of applications from inspection and process control to sorting and assembly

  7. Generic sorting of raft lipids into secretory vesicles in yeast

    DEFF Research Database (Denmark)

    Surma, Michal A; Klose, Christian; Klemm, Robin W; Ejsing, Christer S.; Simons, Kai

    2011-01-01

    Previous work has showed that ergosterol and sphingolipids become sorted to secretory vesicles immunoisolated using a chimeric, artificial raft membrane protein as bait. In this study, we have extended this analysis to three populations of secretory vesicles isolated using natural yeast plasma...... membrane (PM) proteins: Pma1p, Mid2p and Gap1*p as baits. We compared the lipidomes of the immunoisolated vesicles with each other and with the lipidomes of the donor compartment, the trans-Golgi network, and the acceptor compartment, the PM, using a quantitative mass spectrometry approach that provided a...... complete lipid overview of the yeast late secretory pathway. We could show that vesicles captured with different baits carry the same cargo and have almost identical lipid compositions; being highly enriched in ergosterol and sphingolipids. This finding indicates that lipid raft sorting is a generic...

  8. Large area magnetic micropallet arrays for cell colony sorting.

    Science.gov (United States)

    Cox-Muranami, Wesley A; Nelson, Edward L; Li, G P; Bachman, Mark

    2016-01-01

    A new micropallet array platform for adherent cell colony sorting has been developed. The platform consisted of thousands of square plastic pallets, 270 μm by 270 μm on each side, large enough to hold a single colony of cells. Each pallet included a magnetic core, allowing them to be collected with a magnet after being released using a microscope mounted laser system. The micropallets were patterned from 1002F epoxy resist and were fabricated on translucent, gold coated microscope slides. The gold layer was used as seed for electroplating the ferromagnetic cores within every individual pallet. The gold layer also facilitated the release of each micropallet during laser release. This array allows for individual observation, sorting and collection of isolated cell colonies for biological cell colony research. In addition to consistent release and recovery of individual colonies, we demonstrated stable biocompatibility and minimal loss in imaging quality compared to previously developed micropallet arrays. PMID:26606460

  9. Spike sorting in the frequency domain with overlap detection

    CERN Document Server

    Rinberg, D; Davidowitz, H; Tishby, N; Rinberg, Dima; Bialek, William; Davidowitz, Hanan; Tishby, Naftali

    2003-01-01

    This paper deals with the problem of extracting the activity of individual neurons from multi-electrode recordings. Important aspects of this work are: 1) the sorting is done in two stages - a statistical model of the spikes from different cells is built and only then are occurrences of these spikes in the data detected by scanning through the original data, 2) the spike sorting is done in the frequency domain, 3) strict statistical tests are applied to determine if and how a spike should be classiffed, 4) the statistical model for detecting overlaping spike events is proposed, 5) slow dynamics of spike shapes are tracked during long experiments. Results from the application of these techniques to data collected from the escape response system of the American cockroach, Periplaneta americana, are presented.

  10. Cholesterol-induced protein sorting: an analysis of energetic feasibility

    DEFF Research Database (Denmark)

    Lundbaek, J A; Andersen, O S; Werge, T;

    2003-01-01

    thickness. In this model, Golgi proteins with short TMDs would be excluded from cholesterol-enriched domains (lipid rafts) that are incorporated into transport vesicles destined for the plasma membrane. Although attractive, this model remains unproven. We therefore evaluated the energetic feasibility of a...... cholesterol-dependent sorting process using the theory of elastic liquid crystal deformations. We show that the distribution of proteins between cholesterol-enriched and cholesterol-poor bilayer domains can be regulated by cholesterol-induced changes in the bilayer physical properties. Changes in bilayer...... thickness per se, however, have only a modest effect on sorting; the major effect arises because cholesterol changes also the bilayer material properties, which augments the energetic penalty for incorporating short TMDs into cholesterol-enriched domains. We conclude that cholesterol-induced changes in the...

  11. Automatic sorting of point pattern sets using Minkowski Functionals

    CERN Document Server

    Parker, Joshua; van de Raa, Matthias; van der Meer, Devaraj; Samelson, Lawrence E; Losert, Wolfgang

    2013-01-01

    Point pattern sets arise in many different areas of physical, biological, and applied research, representing many random realizations of underlying pattern formation mechanisms. These pattern sets can be heterogeneous with respect to underlying spatial processes, which may not be visually distinguishable. This heterogeneity can be elucidated by looking at statistical measures of the patterns sets and using these measures to divide the pattern set into distinct groups representing like spatial processes. We introduce here a numerical procedure for sorting point pattern sets into spatially homogeneous groups using Functional Principal Component Analysis (FPCA) applied to the approximated Minkowski functionals of each pattern. We demonstrate that this procedure correctly sorts pattern sets into similar groups both when the patterns are drawn from similar processes and when the 2nd-order characteristics of the pattern are identical. We highlight this routine for distinguishing the molecular patterning of fluoresc...

  12. Sorting and Manipulation of Magnetic Droplets in Continuous Flow

    Science.gov (United States)

    Al-Hetlani, Entesar; Hatt, Oliver J.; Vojtíšek, Martin; Tarn, Mark D.; Iles, Alexander; Pamme, Nicole

    2010-12-01

    We report the rapid on-chip generation and subsequent manipulation of magnetic droplets in continuous flow. Magnetic droplets were formed using aqueous-based ferrofluid as the dispersed phase and fluorocarbon oil as the continuous phase. Droplet manipulation was demonstrated with simple permanent magnets using two microfluidic platforms: (i) flow focusing droplet generation followed by their splitting into daughter droplets containing different amounts of magnetic nanoparticles, and (ii) droplet generation at a T-junction and their downstream deflection across a chamber for sorting based on the applied magnetic field and magnetite loading of the droplet. Both systems show great potential for performing a wide range of high throughput continuous flow processes including sample dilution, cell sorting and screening, and microparticle fabrication.

  13. Sorting facility for group 1,2 solid radioactive waste

    International Nuclear Information System (INIS)

    A facility for sorting group 1 and 2 solid radioactive waste (SRW) (its gamma radiation dose rate being not in excess of 5x10-4 and 0.5x10-2 Sv/h, respectively, at a distance of 0.1 m from the surface), which has been developed and manufactured by OJSC SverdNIIkhimmash is described. The facility integrates a bunker, a large guillotine, a box fitted out with manipulators, a discharge chamber, a small guillotine, a sorting chamber, a feeder and control system. The purpose and structure of each element of the facility are considered along with operation of the facility as a whole, its technical characteristics being provided

  14. Spatial sorting promotes the spread of maladaptive hybridization

    Science.gov (United States)

    Lowe, Winsor H.; Muhlfeld, Clint C.; Allendorf, Fred W.

    2015-01-01

    Invasive hybridization is causing loss of biodiversity worldwide. The spread of such introgression can occur even when hybrids have reduced Darwinian fitness, which decreases the frequency of hybrids due to low survival or reproduction through time. This paradox can be partially explained by spatial sorting, where genotypes associated with dispersal increase in frequency at the edge of expansion, fueling further expansion and allowing invasive hybrids to increase in frequency through space rather than time. Furthermore, because all progeny of a hybrid will be hybrids (i.e., will possess genes from both parental taxa), nonnative admixture in invaded populations can increase even when most hybrid progeny do not survive. Broader understanding of spatial sorting is needed to protect native biodiversity.

  15. Multi-color photon sorting in plasmonic microcavities

    International Nuclear Information System (INIS)

    Multi-color photon sorting is realized on the basis of plasmonic microcavities etched in a gold film coated with a polyvinyl alcohol layer. Both wide-band unidirectional surface plasmon polariton launchers and plasmonic microcavities are integrated on-chip. The physical mechanism of the multi-color photon sorting function is attributed as the plasmonic stop bands prohibiting the surface plasmon polariton propagation in a broad wavelength range, while the plasmonic microcavities selectively permit several surface plasmon polaritons to pass, on the basis of the photon tunneling effect. Incident continuous wave lasers with wavelengths of 800, 840, and 880 nm are separated, and decoupled from different output ports. The operating wavelength can be tuned by adjusting the refractive index of the covering polymer layer. (paper)

  16. Droplet sorting in a loop of flat microfluidic channels

    International Nuclear Information System (INIS)

    Motivated by recent experiments, we numerically study the droplet traffic in microfluidic channels forming an asymmetric loop with a long and a short arm. The loop is connected to an inlet and an outlet channel by two right angled T-junctions. Assuming flat channels, we employ the boundary element method (BEM) to numerically solve the two-dimensional Darcy equation that governs two phase flow in the Hele-Shaw limit. The occurrence of different sorting regimes is summarized in sorting diagrams in terms of droplet size, distance between consecutive droplets in the inlet channel, and loop asymmetry for mobility ratios of the liquid phases larger and smaller than one. For large droplet distances, the traffic is regulated by the ratio of the total hydraulic resistances of the long and short arms. At high droplet densities and below a critical droplet size, droplet–droplet collisions are observed for both mobility ratios. (paper)

  17. Sorting facility for group 1 solid radioactive waste

    International Nuclear Information System (INIS)

    A facility for sorting group 1 solid radioactive waste (SRW) (its gamma radiation dose rate not in excess of 0.5x10-4 Sv/h at a distance of 0.1 m from the surface), which has been developed and manufactured by OJSC SverdNIIkhimmash, is described. The facility integrates boxes for sorting, packaging, loading and acceptance of SRW, an accumulating container, a guillotine and control system. The purpose and operation principle of each element of the facility, as well as operation of the facility as a unit, are considered, its technical characteristics being provided. The facility has been placed into operation at the Kursk NPP and demonstrated high reliability and efficiency during operation in service conditions

  18. Passive Sorting of Asteroid Material Using Solar Radiation Pressure

    CERN Document Server

    Yárnoz, Daniel García; McInnes, Colin R

    2014-01-01

    Understanding dust dynamics in the vicinity of asteroids is key for future science missions and, in the long-term, for asteroid exploitation. This paper analyzes the feasibility of manipulating asteroid material by means of solar radiation pressure. A novel method is proposed for passively sorting material as a function of its grain size or density, where solar radiation pressure is used as a passive in-situ "mass spectrometer". A simplified analysis shows that in principle this method allows an effective sorting of regolith material. This could have immediate applications for a sample return mission, and for industrial scale in-situ resource utilization to separate and concentrate regolith according to particle size or composition.

  19. Semiautomatic device for monitoring and sorting photoelectrical transformers

    Energy Technology Data Exchange (ETDEWEB)

    Lukyanenko, V.S.; Antonov, A.I.; Dolguv, V.M.; Krayev, Ye.V.; Nadorov, V.P.; Yeroshin, S.M.

    1982-11-07

    The purpose of the invention is to improve productivity of an automatic device for monitoring and sorting SC. For this purpose a semiautomatic device for monitoring and sorting SC which contains a base with light attached to it, cable with electrical-contact clamp installed under the lamp, optical filter arranged between the lamp and the table, has a mechanism for tipping the table and a guide. The mechanism for tipping the table has a pneumatic cylinder whose rod is hinged to the table. In addition the guide has a bin, inclined double chutes and electromagnetic distributor. The inclined chutes are arranged above the bin, and at the site of bifurcation there are electromagnetic distributors.

  20. Self-organized sorting limits behavioral variability in swarms.

    Science.gov (United States)

    Copenhagen, Katherine; Quint, David A; Gopinathan, Ajay

    2016-01-01

    Swarming is a phenomenon where collective motion arises from simple local interactions between typically identical individuals. Here, we investigate the effects of variability in behavior among the agents in finite swarms with both alignment and cohesive interactions. We show that swarming is abolished above a critical fraction of non-aligners who do not participate in alignment. In certain regimes, however, swarms above the critical threshold can dynamically reorganize and sort out excess non-aligners to maintain the average fraction close to the critical value. This persists even in swarms with a distribution of alignment interactions, suggesting a simple, robust and efficient mechanism that allows heterogeneously mixed populations to naturally regulate their composition and remain in a collective swarming state or even differentiate among behavioral phenotypes. We show that, for evolving swarms, this self-organized sorting behavior can couple to the evolutionary dynamics leading to new evolutionarily stable equilibrium populations set by the physical swarm parameters. PMID:27550316

  1. Neural Network Based Color Recognition for Bobbin Sorting Machine

    Directory of Open Access Journals (Sweden)

    Mu Zhang

    2013-07-01

    Full Text Available Winding is a key process in the manufacturing process of textile industry. The normal and effective operation of winding process plays a very important role on the textiles’ quality and economic effects. At present, a large proportion of bobbins which collected from winder still have yarn left over. The bobbin recycling is severely limited and quick running of winder is seriously restricted, the invention of the the automatic bobbin sorting machine has solved this problem. The ability to distinguish bobbin which has yarn left over from the rest and the classification accuracy of color are the two important performance indicators for bobbin sorting machine. According to the development and application of the color recognition technology and the artificial intelligence method, this study proposes a novel color recognition method that based on BP neural networks. The result shows that the accuracy of color recognition reaches 98%.  

  2. Numerically abnormal chromosome constitutions in humans

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    1993-12-31

    Chapter 24, discusses numerically abnormal chromosome constitutions in humans. This involves abnormalities of human chromosome number, including polyploidy (when the number of sets of chromosomes increases) and aneuploidy (when the number of individual normal chromosomes changes). Chapter sections discuss the following chromosomal abnormalities: human triploids, imprinting and uniparental disomy, human tetraploids, hydatidiform moles, anomalies caused by chromosomal imbalance, 13 trisomy (D{sub 1} trisomy, Patau syndrome), 21 trisomy (Down syndrome), 18 trisomy syndrome (Edwards syndrome), other autosomal aneuploidy syndromes, and spontaneous abortions. The chapter concludes with remarks on the nonrandom participation of chromosomes in trisomy. 69 refs., 3 figs., 4 tabs.

  3. Chromosome evolution in Neotropical butterflies.

    Science.gov (United States)

    Saura, Anssi; Von Schoultz, Barbara; Saura, Anja O; Brown, Keith S

    2013-06-01

    We list the chromosome numbers for 65 species of Neotropical Hesperiidae and 104 species or subspecies of Pieridae. In Hesperiidae the tribe Pyrrhopygini have a modal n = 28, Eudaminae and Pyrgini a modal n = 31, while Hesperiinae have n = around 29. Among Pieridae, Coliadinae have a strong modal n = 31 and among Pierinae Anthocharidini are almost fixed for n = 15 while Pierini vary with n = 26 as the most common chromosome number. Dismorphiinae show wide variation. We discuss these results in the context of chromosome numbers of over 1400 Neotropical butterfly species and subspecies derived from about 3000 populations published here and in earlier papers of a series. The overall results show that many Neotropical groups are characterized by karyotype instability with several derived modal numbers or none at all, while almost all taxa of Lepidoptera studied from the other parts of the world have one of n = 29-31 as modal numbers. Possibly chromosome number changes become fixed in the course of speciation driven by biotic interactions. Population subdivision and structuring facilitate karyotype change. Factors that stabilize chromosome numbers include hybridization among species sharing the same number, migration, sexual selection and possibly the distribution of chromosomes within the nucleus. PMID:23865963

  4. Chromosome Architecture and Genome Organization

    Science.gov (United States)

    Bernardi, Giorgio

    2015-01-01

    How the same DNA sequences can function in the three-dimensional architecture of interphase nucleus, fold in the very compact structure of metaphase chromosomes and go precisely back to the original interphase architecture in the following cell cycle remains an unresolved question to this day. The strategy used to address this issue was to analyze the correlations between chromosome architecture and the compositional patterns of DNA sequences spanning a size range from a few hundreds to a few thousands Kilobases. This is a critical range that encompasses isochores, interphase chromatin domains and boundaries, and chromosomal bands. The solution rests on the following key points: 1) the transition from the looped domains and sub-domains of interphase chromatin to the 30-nm fiber loops of early prophase chromosomes goes through the unfolding into an extended chromatin structure (probably a 10-nm “beads-on-a-string” structure); 2) the architectural proteins of interphase chromatin, such as CTCF and cohesin sub-units, are retained in mitosis and are part of the discontinuous protein scaffold of mitotic chromosomes; 3) the conservation of the link between architectural proteins and their binding sites on DNA through the cell cycle explains the “mitotic memory” of interphase architecture and the reversibility of the interphase to mitosis process. The results presented here also lead to a general conclusion which concerns the existence of correlations between the isochore organization of the genome and the architecture of chromosomes from interphase to metaphase. PMID:26619076

  5. A Comparative Analysis of Deterministic Sorting Algorithms based on Runtime and Count of Various Operations

    Directory of Open Access Journals (Sweden)

    Reyha Verma

    2015-12-01

    Full Text Available Sorting algorithms find its application in many practical fields of Computer Science. Efficient solving of sorting problem has attracted a great deal of research as it optimizes other algorithms also. The main factor which is taken into consideration while determining the efficiency of a sorting algorithm is the time complexity. Mostly the execution time of algorithms is investigated and compared for analyzing time complexity. This paper presents a comparative analysis of deterministic sorting algorithms. Time complexity of six different algorithms namely, Selection sort, Bubble sort, Insertion sort, Quicksort, Heapsort and Mergesort is determined in terms of number of comparisons, swaps and assignment operations in addition to average execution time. Also, the performance of these algorithms on fully and almost sorted lists was also analyzed. The study indicates that determining the operation’s count is essential for analyzing time complexity especially when algorithms are theoretically analyzed.

  6. Sorting, Searching, and Simulation in the MapReduce Framework

    DEFF Research Database (Denmark)

    Goodrich, Michael T.; Sitchinava, Nodar; Zhang, Qin

    2011-01-01

    We study the MapReduce framework from an algorithmic standpoint, providing a generalization of the previous algorithmic models for MapReduce. We present optimal solutions for the fundamental problems of all-prefix-sums, sorting and multi-searching. Additionally, we design optimal simulations of the...... the well-established PRAM and BSP models in MapReduce, immediately resulting in optimal solutions to the problems of computing fixed-dimensional linear programming and 2-D and 3-D convex hulls....

  7. Insight into economies of scale for waste packaging sorting plants

    DEFF Research Database (Denmark)

    Cimpan, Ciprian; Wenzel, Henrik; Maul, Anja;

    2015-01-01

    This contribution presents the results of a techno-economic analysis performed for German Materials Recovery Facilities (MRFs) which sort commingled lightweight packaging waste (consisting of plastics, metals, beverage cartons and other composite packaging). The study addressed the importance......-70 € for large plants employing advanced process flows. Typical operational practice, often riddled with inadequate process parameters was compared with planned or designed operation. The former was found to significantly influence plant efficiency and therefore possible revenue streams from the sale of output...

  8. Sorting on skills and preferences: Tinbergen meets Sattinger

    OpenAIRE

    Dupuy, A.

    2011-01-01

    This paper proposes an assignment model where sorting occurs on attributes that are simultaneously a skill (Sattinger, 1979) and a preference (Tinbergen, 1956). The key feature of this model is that the wage function admits both jobs'' and workers'' attributes as arguments. Since this function is generically nonlinear (Ekeland et al., 2004), even under positive assortative matching, the correlation between the contribution of workers'' attributes to wages and that of jobs'' attributes can var...

  9. Parallel Sorted Neighborhood Blocking with MapReduce

    CERN Document Server

    Kolb, Lars; Rahm, Erhard

    2010-01-01

    Cloud infrastructures enable the efficient parallel execution of data-intensive tasks such as entity resolution on large datasets. We investigate challenges and possible solutions of using the MapReduce programming model for parallel entity resolution. In particular, we propose and evaluate two MapReduce-based implementations for Sorted Neighborhood blocking that either use multiple MapReduce jobs or apply a tailored data replication.

  10. Incomplete Lineage Sorting: Consistent Phylogeny Estimation From Multiple Loci

    CERN Document Server

    Mossel, Elchanan

    2008-01-01

    We introduce a simple algorithm for reconstructing phylogenies from multiple gene trees in the presence of incomplete lineage sorting, that is, when the topology of the gene trees may differ from that of the species tree. We show that our technique is statistically consistent under standard stochastic assumptions, that is, it returns the correct tree given sufficiently many unlinked loci. We also show that it can tolerate moderate estimation errors.

  11. Local Residential Sorting and Public Goods Provision: A Classroom Demonstration

    OpenAIRE

    Keith Brouhle; Jay Corrigan; Rachel Croson; Martin Farnham; Selhan Garip; Luba Habodaszova; Laurie Tipton Johnson; Martin Johnson; David Reiley

    2005-01-01

    This classroom exercise illustrates the Tiebout (1956) hypothesis that residential sorting across multiple jurisdictions leads to a more efficient allocation of local public goods. The exercise places students with heterogeneous preferences over a public good into a single classroom community. A simple voting mechanism determines the level of public good provision in the community. Next the classroom is divided in two, and students may choose to move between the two smaller communities, sorti...

  12. Understanding microwave induced sorting of porphyry copper ores

    OpenAIRE

    John, R.S.; Batchelor, A.R.; Ivanov, D.; Udoudo, O.B.; Jones, D.A.; Dodds, Chris; Kingman, S. W.

    2015-01-01

    Global demand for minerals and metals is increasing. It has been established that the impact of mining and mineral processing operations must be reduced to sustainably meet the demands of a low grade future. Successful incorporation of ore sorting in flow sheets has the potential to improve energy efficiency by rejecting non-economic material before grinding. Microwave heating combined with infra-red temperature measurement has been shown to distinguish low and high grade ore fragments from e...

  13. Thermal Conductivity of Chirality-Sorted Carbon Nanotube Networks

    OpenAIRE

    Lian, Feifei; Llinas, Juan P.; Li, Zuanyi; Estrada, David; Pop, Eric

    2016-01-01

    The thermal properties of single-walled carbon nanotubes (SWNTs) are of significant interest, yet their dependence on SWNT chirality has been, until now, not explored experimentally. Here we used electrical heating and infrared thermal imaging to simultaneously study thermal and electrical transport in chirality-sorted SWNT networks. We examined solution processed 90% semiconducting, 90% metallic, purified unsorted (66% semiconducting), and as-grown HiPco SWNT films. The thermal conductivitie...

  14. Isolation and Characterization of Aspergillus oryzae Vacuolar Protein Sorting Mutants

    OpenAIRE

    Ohneda, Mamoru; Arioka, Manabu; Kitamoto, Katsuhiko

    2005-01-01

    The vacuolar protein sorting (vps) system in the filamentous fungus Aspergillus oryzae, which has unique cell polarity and the ability to secrete large amounts of proteins, was evaluated by using mutants that missort vacuolar proteins into the medium. Vacuolar carboxypeptidase Y (CPY) fused with enhanced green fluorescent protein (EGFP) was used as a vacuolar marker. Twenty dfc (dim EGFP fluorescence in conidia) mutants with reduced intracellular EGFP fluorescence in conidia were isolated by ...

  15. An RGS-Containing Sorting Nexin Controls Drosophila Lifespan

    OpenAIRE

    Suh, Jae Myoung; Stenesen, Drew; Peters, John M; Inoue, Akiko; Cade, Angela; Graff, Jonathan M.

    2008-01-01

    The pursuit of eternal youth has existed for centuries and recent data indicate that fat-storing tissues control lifespan. In a D. melanogaster fat body insertional mutagenic enhancer trap screen designed to isolate genes that control longevity, we identified a regulator of G protein signaling (RGS) domain containing sorting nexin, termed snazarus ( s orting n exin l azarus , snz). Flies with insertions into the 5′ UTR of snz live up to twice as long as controls. Transgenic expression of UAS-...

  16. MANNER OF STOCKS SORTING USING CLUSTER ANALYSIS METHODS

    Directory of Open Access Journals (Sweden)

    Jana Halčinová

    2014-06-01

    Full Text Available The aim of the present article is to show the possibility of using the methods of cluster analysis in classification of stocks of finished products. Cluster analysis creates groups (clusters of finished products according to similarity in demand i.e. customer requirements for each product. Manner stocks sorting of finished products by clusters is described a practical example. The resultants clusters are incorporated into the draft layout of the distribution warehouse.

  17. Plasma Diffuser Sorts Light Atoms to Solar Surface

    OpenAIRE

    Manuel, O.

    2005-01-01

    The Sun operates like a giant plasma diffuser that sorts lighter isotopes and elements to the solar surface. Measurements indicate that the interior of the Sun consists mostly of the same seven, even-numbered elements as ordinary meteorites: Iron, oxygen, nickel, silicon, sulfur, magnesium, and calcium. These ordinary elements compose clothing on the central neutron star that was produced at the core of the supernova that exploded here 5 billion years ago. Neutron emission generates most sola...

  18. Constrained Multicriteria Sorting Method Applied to Portfolio Selection

    OpenAIRE

    Zheng, Jun; Cailloux, Olivier; Mousseau, Vincent

    2011-01-01

    The paper focuses on portfolio selection problems which aim at selecting a subset of alternatives considering not only the performance of the alternatives evaluated on multiple criteria, but also the performance of portfolio as a whole, on which balance over alternatives on specific attributes is required by the Decision Makers (DMs). We propose a two-level method to handle such decision situation. First, at the individual level, the alternatives are evaluated by the sorting model Electre Tri...

  19. Nominal tense logic and other sorted intensional frameworks

    OpenAIRE

    Blackburn, Patrick Rowan

    1990-01-01

    This thesis introduces of a system of tense logic called nominal tense logic (NTL), and several extensions. Its primary aim is to establish that these systems are logically interesting, and can provide useful models of natural language tense, temporal reference, and their interaction. Languages of nominal tense logic are a simple augmentation of Priorean tense logic. They add to the familiar Priorean languages a new sort of atomic symbol, nominals. Like propositional variabl...

  20. Learning Cellular Sorting Pathways Using Protein Interactions and Sequence Motifs

    OpenAIRE

    Lin, Tien-ho; Bar-Joseph, Ziv; Murphy, Robert F.

    2011-01-01

    Proper subcellular localization is critical for proteins to perform their roles in cellular functions. Proteins are transported by different cellular sorting pathways, some of which take a protein through several intermediate locations until reaching its final destination. The pathway a protein is transported through is determined by carrier proteins that bind to specific sequence motifs. In this article, we present a new method that integrates protein interaction and sequence motif data to m...

  1. An Automated Sorting System Based on Virtual Instrumentation Techniques

    OpenAIRE

    Rodica Holonec

    2008-01-01

    The application presented in this paper represents an experimental model and it refers to the implementing of an automated sorting system for pieces of same shape but different sizes and/or colors. The classification is made according to two features: the color and weight of these pieces. The system is a complex combination of NI Vision hardware and software tools, strain gauges transducers, signal conditioning connected to data acquisition boards, motion and control elements. The system is v...

  2. Rising Family Income Inequality: The Importance of Sorting

    OpenAIRE

    2012-01-01

    The distribution of family income reflects the distribution of personal income and the composition of families. We develop a non-parametric measure of the impact that changes in family income relationships have on the distribution of family income. Using data from Annual Social and Economic Supplement (the March files) of the Current Population Survey (CPS) (1968-2003), we find that changes in "income sorting" account for more than half of the increase in family income inequality in the Unite...

  3. Sorting and Factor Intensity: Production and Unemployment across Skills

    OpenAIRE

    Philipp Kircher; Jan Eeckhout

    2011-01-01

    When firms choose the allocation of workers, they can adjust not only the type of worker, the extensive margin, but also the intensive margin, how many of those worker to employ. We propose a tractable matching model with such factor intensity. Positive sorting arises under cross-margin-complementarity: within-complementarities in extensive and intensive margin exceed the between-complementarities across intensive and extensive margin. We characterize the equilibrium allocation, wages and fac...

  4. Multidirectional sorting modes in deterministic lateral displacement devices

    DEFF Research Database (Denmark)

    Long, B.R.; Heller, Martin; Beech, J.P.;

    2008-01-01

    Deterministic lateral displacement (DLD) devices separate micrometer-scale particles in solution based on their size using a laminar microfluidic flow in an array of obstacles. We investigate array geometries with rational row-shift fractions in DLD devices by use of a simple model including both...... advection and diffusion. Our model predicts multidirectional sorting modes that could be experimentally tested in high-throughput DLD devices containing obstacles that are much smaller than the separation between obstacles....

  5. Regulation of coat assembly- sorting things out at the ER

    OpenAIRE

    Miller, Elizabeth A.; Barlowe, Charles

    2010-01-01

    The small GTPase Sar1 resides at the core of a regulatory cycle that controls protein export from the ER in COPII vesicles. Recent advances in minimally reconstituted systems indicate continual flux of Sar1 through GTPase cycles facilitates cargo concentration into forming vesicles that ultimately bud from membranes. During export from ER membranes, this GTPase cycle is harnessed through the combinatorial power of multiple coat subunits and cargo adaptors to sort an expanding array of protein...

  6. Geographic Concentration of Business Services Firms: A Poisson Sorting Model

    OpenAIRE

    Koster, Hans,; van Ommeren, Jos N.; Rietveld, Piet

    2011-01-01

    This paper estimates a heterogeneous sorting model for firms, employing a semiparametric Poisson approach. We show that there is an equivalence relation between a locally weighted Logit and Poisson model. We apply our model to estimate firm-specific preferences of business services firms for location attributes such as diversity of economic activities and specialisation of business services. We correct for endogeneity of our specialisation measure by means of a control function approach, usin...

  7. Neural Network Based Color Recognition for Bobbin Sorting Machine

    OpenAIRE

    Mu Zhang; Xueqian Ding; Xin Li

    2013-01-01

    Winding is a key process in the manufacturing process of textile industry. The normal and effective operation of winding process plays a very important role on the textiles’ quality and economic effects. At present, a large proportion of bobbins which collected from winder still have yarn left over. The bobbin recycling is severely limited and quick running of winder is seriously restricted, the invention of the the automatic bobbin sorting machine has solved this problem. The ability to dist...

  8. Digestibility Improvement of Sorted Waste with Alkaline Hydrothermai Pretreatment

    Institute of Scientific and Technical Information of China (English)

    WANG Hao; WANG Hongtao; LU Wenjing; ZHAO Yan

    2009-01-01

    The digestibility of sorted municipal solid waste (MSW) is often limited by the high content of structured green waste. The objectives of this study are to investigate the effect of alkaline hydrothermal pretreatment on the anaerobic digestion of sorted waste and to analyze the biogas production of different parts of the waste. The waste was hydrothermally pretreated in a dilute alkali solution. The hydrolysis product was then incubated in a 500 mL saline bottle to determine the biochemical methane potential (BMP) under mesophilic anaerobic conditions. The optimum hydrothermal condition was 170℃ at 4 g NaOH/100 g solid for one hour. The concentration of chemical oxygen demand (COD) was 13 936 mg/L and the methane yield was 164 mL/g volatile solid (VS) for 6 days incubation at the optimum conditions. The biogas production was increased more than 50% over the control, with the methane conversion ratio on a carbon basis enhanced to 30.6%. The organic part of the sorted waste was mainly kitchen garbage and leaves. Model kitchen garbage completely liquified at 130℃ for one hour had a methane yield of 276 mL/g VS. The alkali addition slightly enhanced the hydrolyzation rate and methane yield. The biogas potential of leaves was improved by pre-treatment at above 150℃ under alkaline conditions.

  9. Sort-Mid tasks scheduling algorithm in grid computing.

    Science.gov (United States)

    Reda, Naglaa M; Tawfik, A; Marzok, Mohamed A; Khamis, Soheir M

    2015-11-01

    Scheduling tasks on heterogeneous resources distributed over a grid computing system is an NP-complete problem. The main aim for several researchers is to develop variant scheduling algorithms for achieving optimality, and they have shown a good performance for tasks scheduling regarding resources selection. However, using of the full power of resources is still a challenge. In this paper, a new heuristic algorithm called Sort-Mid is proposed. It aims to maximizing the utilization and minimizing the makespan. The new strategy of Sort-Mid algorithm is to find appropriate resources. The base step is to get the average value via sorting list of completion time of each task. Then, the maximum average is obtained. Finally, the task has the maximum average is allocated to the machine that has the minimum completion time. The allocated task is deleted and then, these steps are repeated until all tasks are allocated. Experimental tests show that the proposed algorithm outperforms almost other algorithms in terms of resources utilization and makespan. PMID:26644937

  10. Selective sorting of waste - not much effort needed, just willpower

    CERN Multimedia

    2007-01-01

    In order to keep as low as possible the cost of disposing of waste materials, CERN provides in the entrance to each building two types of recipient: a green plastic one for paper/cardboard and a metallic one for general refuse. For some time now, we have noticed, to our great regret, a growing neglect as far as the selective sorting is concerned, for example the green recipients being filled with a mixture of cardboard boxes full of polystyrene or of protective wrappers, plastic bottles, empty yogurts pots, etc …We have been able to ascertain, after carefully checking, that this haphazard mixing of waste cannot be attributed to the cleaning staff but rather to members of personnel who unscrupulously throw away their rubbish in a completely random manner. Waste non sorted entails heavy costs for CERN. For your information, once a non-compliant item is found in a green recipient, the entire contents are sent off for incineration rather than recycling… We are all concerned by selective sorting of waste mater...

  11. Efficient Architecture for Spike Sorting in Reconfigurable Hardware

    Directory of Open Access Journals (Sweden)

    Sheng-Ying Lai

    2013-11-01

    Full Text Available This paper presents a novel hardware architecture for fast spike sorting. The architecture is able to perform both the feature extraction and clustering in hardware. The generalized Hebbian algorithm (GHA and fuzzy C-means (FCM algorithm are used for feature extraction and clustering, respectively. The employment of GHA allows efficient computation of principal components for subsequent clustering operations. The FCM is able to achieve near optimal clustering for spike sorting. Its performance is insensitive to the selection of initial cluster centers. The hardware implementations of GHA and FCM feature low area costs and high throughput. In the GHA architecture, the computation of different weight vectors share the same circuit for lowering the area costs. Moreover, in the FCM hardware implementation, the usual iterative operations for updating the membership matrix and cluster centroid are merged into one single updating process to evade the large storage requirement. To show the effectiveness of the circuit, the proposed architecture is physically implemented by field programmable gate array (FPGA. It is embedded in a System-on-Chip (SOC platform for performance measurement. Experimental results show that the proposed architecture is an efficient spike sorting design for attaining high classification correct rate and high speed computation.

  12. Exosome and Exosomal MicroRNA:Trafficking, Sorting, and Function

    Institute of Scientific and Technical Information of China (English)

    Jian Zhang; Sha Li; Lu Li; Meng Li; Chongye Guo; Jun Yao; Shuangli Mi

    2015-01-01

    Exosomes are 40–100 nm nano-sized vesicles that are released from many cell types into the extracellular space. Such vesicles are widely distributed in various body fluids. Recently, mRNAs and microRNAs (miRNAs) have been identified in exosomes, which can be taken up by neighboring or distant cells and subsequently modulate recipient cells. This suggests an active sort-ing mechanism of exosomal miRNAs, since the miRNA profiles of exosomes may differ from those of the parent cells. Exosomal miRNAs play an important role in disease progression, and can stimu-late angiogenesis and facilitate metastasis in cancers. In this review, we will introduce the origin and the trafficking of exosomes between cells, display current research on the sorting mechanism of exo-somal miRNAs, and briefly describe how exosomes and their miRNAs function in recipient cells. Finally, we will discuss the potential applications of these miRNA-containing vesicles in clinical settings.

  13. GRAIN SORTING IN COMETARY DUST FROM THE OUTER SOLAR NEBULA

    International Nuclear Information System (INIS)

    Most young stars are surrounded by a disk of gas and dust. Close to the hot stars, amorphous dust grains from the parent molecular cloud are reprocessed into crystals that are then distributed throughout the accretion disk. In some disks, there is a reduction in crystalline grain size with heliocentric distance from the star. We investigated crystalline grain size distributions in chondritic porous (CP) interplanetary dust particles (IDPs) believed to be from small, icy bodies that accreted in outer regions of the solar nebula. The grains are Mg-rich silicates and Fe-rich sulfides, the two most abundant minerals in CP IDPs. We find that they are predominantly <0.25 μm in radius with a mean grain size that varies from one CP IDP to another. We report a size-density relationship between the silicates and sulfides. A similar size-density relationship between much larger silicate and sulfide grains in meteorites from the asteroid belt is ascribed to aerodynamic sorting. Since the silicate and sulfide grains in CP IDPs are theoretically too small for aerodynamic sorting, their size-density relationship may be due to another process capable of sorting small grains.

  14. Continuous-feed optical sorting of aerosol particles.

    Science.gov (United States)

    Curry, J J; Levine, Zachary H

    2016-06-27

    We consider the problem of sorting, by size, spherical particles of order 100 nm radius. The scheme we analyze consists of a heterogeneous stream of spherical particles flowing at an oblique angle across an optical Gaussian mode standing wave. Sorting is achieved by the combined spatial and size dependencies of the optical force. Particles of all sizes enter the flow at a point, but exit at different locations depending on size. Exiting particles may be detected optically or separated for further processing. The scheme has the advantages of accommodating a high throughput, producing a continuous stream of continuously dispersed particles, and exhibiting excellent size resolution. We performed detailed Monte Carlo simulations of particle trajectories through the optical field under the influence of convective air flow. We also developed a method for deriving effective velocities and diffusion constants from the Fokker-Planck equation that can generate equivalent results much more quickly. With an optical wavelength of 1064 nm, polystyrene particles with radii in the neighborhood of 275 nm, for which the optical force vanishes, may be sorted with a resolution below 1 nm. PMID:27410570

  15. Sorting, Searching, and Simulation in the MapReduce Framework

    CERN Document Server

    Goodrich, Michael T; Zhang, Qin

    2011-01-01

    In this paper, we study the MapReduce framework from an algorithmic standpoint and demonstrate the usefulness of our approach by designing and analyzing efficient MapReduce algorithms for fundamental sorting, searching, and simulation problems. This study is motivated by a goal of ultimately putting the MapReduce framework on an equal theoretical footing with the well-known PRAM and BSP parallel models, which would benefit both the theory and practice of MapReduce algorithms. We describe efficient MapReduce algorithms for sorting, multi-searching, and simulations of parallel algorithms specified in the BSP and CRCW PRAM models. We also provide some applications of these results to problems in parallel computational geometry for the MapReduce framework, which result in efficient MapReduce algorithms for sorting, 2- and 3-dimensional convex hulls, and fixed-dimensional linear programming. For the case when mappers and reducers have a memory/message-I/O size of $M=\\Theta(N^\\epsilon)$, for a small constant $\\epsi...

  16. Thermochemical Pretreatment for Anaerobic Digestion of Sorted Waste

    Science.gov (United States)

    Hao, W.; Hongtao, W.

    2008-02-01

    The effect of alkaline hydrothermal pre-treatment for anaerobic digestion of mechanically-sorted municipal solid waste (MSW) and source-sorted waste was studied. Waste was hydrothermally pre-treated in dilute alkali solution. Hydrolysis product was incubated in 500 ml saline bottle to determine methane potential (MP) under mesospheric anaerobic conditions. Optimum reaction condition obtained in the study is 170 °C at the dose of 4 g NaOH/100 g solid for one hour. Soluble COD was 13936 mg/L and methane yield was 164 ml/g VS for 6 days incubation at optimum conditions. More than 50% biogas increase was achieved over the control, and methane conversion ratio on carbon basis was enhanced to 30.6%. The digestion period was less than 6 days when pre-treatment temperature was above 130 °C. The organic part of sorted waste is mainly constituted of kitchen garbage and leaf. Model kitchen garbage was completely liquidized at 130 °C for one hour and the methane yield was 276 ml/g VS. Addition of alkali enhance hydroxylation rate and methane yield slightly. The biogas potential of leaf could be observed by pre-treatment above 150 °C under alkaline condition.

  17. Waste Sorting Habits by the Community of Kaunas University of Technology, Reasons and Influencing Factors

    OpenAIRE

    Toma Adomavičiūtė; Jolita Kruopienė; Visvaldas Varžinskas; Inga Gurauskienė

    2013-01-01

    The article presents the waste management system at Kaunas University of Technology, surveys the waste sorting habits of its community, both students and employees, and analyses the reasons and factors influencing waste sorting and non-sorting. The introduction of a separate paper waste collection system has made it possible to reduce the amount of mixed waste by 25% during the first three months of its functioning. 58% of employees and 45% of students sort some of their waste partly, 23% of ...

  18. Sorting in early endosomes reveals connections to docking- and fusion-associated factors

    OpenAIRE

    Barysch, Sina V.; Aggarwal, Shweta; Jahn, Reinhard; Rizzoli, Silvio O.

    2009-01-01

    The early endosomes constitute a major sorting platform in eukaryotic cells. They receive material through fusion with endocytotic vesicles or with trafficking vesicles from the Golgi complex and later sort it into budding vesicles. While endosomal fusion is well understood, sorting is less characterized; the 2 processes are generally thought to be effected by different, unrelated machineries. We developed here a cell-free assay for sorting/budding from early endosomes, by taking advantage of...

  19. Evolution of Sex Chromosomes in Insects

    OpenAIRE

    Kaiser, Vera B; Bachtrog, Doris

    2010-01-01

    Sex chromosomes have many unusual features relative to autosomes. Y (or W) chromosomes lack genetic recombination, are male- (female-) limited, and show an abundance of genetically inert heterochromatic DNA but contain few functional genes. X (or Z) chromosomes also show sex-biased transmission (i.e., X chromosomes show female-biased and Z-chromosomes show male-biased inheritance) and are hemizygous in the heterogametic sex. Their unusual ploidy level and pattern of inheritance imply that sex...

  20. A time- and cost-effective strategy to sequence mammalian Y Chromosomes: an application to the de novo assembly of gorilla Y.

    Science.gov (United States)

    Tomaszkiewicz, Marta; Rangavittal, Samarth; Cechova, Monika; Sanchez, Rebeca Campos; Fescemyer, Howard W; Harris, Robert; Ye, Danling; O'Brien, Patricia C M; Chikhi, Rayan; Ryder, Oliver A; Ferguson-Smith, Malcolm A; Medvedev, Paul; Makova, Kateryna D

    2016-04-01

    The mammalian Y Chromosome sequence, critical for studying male fertility and dispersal, is enriched in repeats and palindromes, and thus, is the most difficult component of the genome to assemble. Previously, expensive and labor-intensive BAC-based techniques were used to sequence the Y for a handful of mammalian species. Here, we present a much faster and more affordable strategy for sequencing and assembling mammalian Y Chromosomes of sufficient quality for most comparative genomics analyses and for conservation genetics applications. The strategy combines flow sorting, short- and long-read genome and transcriptome sequencing, and droplet digital PCR with novel and existing computational methods. It can be used to reconstruct sex chromosomes in a heterogametic sex of any species. We applied our strategy to produce a draft of the gorilla Y sequence. The resulting assembly allowed us to refine gene content, evaluate copy number of ampliconic gene families, locate species-specific palindromes, examine the repetitive element content, and produce sequence alignments with human and chimpanzee Y Chromosomes. Our results inform the evolution of the hominine (human, chimpanzee, and gorilla) Y Chromosomes. Surprisingly, we found the gorilla Y Chromosome to be similar to the human Y Chromosome, but not to the chimpanzee Y Chromosome. Moreover, we have utilized the assembled gorilla Y Chromosome sequence to design genetic markers for studying the male-specific dispersal of this endangered species. PMID:26934921

  1. Chromosome evolution in Solanum traced by cross-species BAC-FISH.

    Science.gov (United States)

    Szinay, Dóra; Wijnker, Erik; van den Berg, Ronald; Visser, Richard G F; de Jong, Hans; Bai, Yuling

    2012-08-01

    Chromosomal rearrangements are relatively rare evolutionary events and can be used as markers to study karyotype evolution. This research aims to use such rearrangements to study chromosome evolution in Solanum. Chromosomal rearrangements between Solanum crops and several related wild species were investigated using tomato and potato bacterial artificial chromosomes (BACs) in a multicolour fluorescent in situ hybridization (FISH). The BACs selected are evenly distributed over seven chromosomal arms containing inversions described in previous studies. The presence/absence of these inversions among the studied Solanum species were determined and the order of the BAC-FISH signals was used to construct phylogenetic trees.Compared with earlier studies, data from this study provide support for the current grouping of species into different sections within Solanum; however, there are a few notable exceptions, such as the tree positions of S. etuberosum (closer to the tomato group than to the potato group) and S. lycopersicoides (sister to S. pennellii). These apparent contradictions might be explained by interspecific hybridization events and/or incomplete lineage sorting. This cross-species BAC painting technique provides unique information on genome organization, evolution and phylogenetic relationships in a wide variety of species. Such information is very helpful for introgressive breeding. PMID:22686400

  2. On the Origin and Evolution of the Extant System of B Chromosomes in Oryzomyini Radiation (Rodentia, Sigmodontinae).

    Science.gov (United States)

    Ventura, Karen; O'Brien, Patricia Caroline Mary; do Nascimento Moreira, Camila; Yonenaga-Yassuda, Yatiyo; Ferguson-Smith, Malcolm Andrew

    2015-01-01

    Heterogeneous supernumerary chromosomes (Bs) are recognized in the oryzomyines Holochilus brasiliensis, Nectomys rattus, N. squamipes, Oligoryzomys flavescens and Sooretamys angouya, representing about 10% of all known B-containing rodent species. They provide an outstanding model for understanding the origin, evolution and diversity of Bs in a phylogenetic context. Therefore, whole chromosome-specific probes were generated from flow-sorted Holochilus brasiliensis (HBR) autosomes 11 and 25+26 and chromosomes X, Y and Bs. Hybridizations were performed on male metaphases of 15 Oryzomyini species of which 3 are B-containing species. The results reveal that among the species sampled, 12 of them, belonging to a monophyletic Oryzomiyini subclade, are positive for an anonymous Oryzomyini shared heterochromatic region (OSHR) on both sex chromosomes. The OSHR is also present on Bs of Holochilus brasiliensis, Nectomys rattus and N. squamipes but not on Bs of O. flavescens and S. angouya. Two distinct additional OSHR/autosome associations are observed on S. angouya. The three species that are OSHR negative belong to an outgroup. Molecular dating suggests that the OSHR originated between 7.8 and 3 Mya on ancestral sex chromosomes. A tentative explanation for the OSHR-positive nature of B regions in three species could be that transposable elements (TEs) from this specific sex chromosome region may have invaded existing B chromosomes. The presence of the OSHR on entire Xp and Yp adjacent to interstitial telomeric sequences at pericentromeric positions, as observed in Drymoreomys albimaculatus, show a similar organization as on B chromosomes in Nectomys squamipes. The diversity of the Oryzomyini Bs in number, size, morphology and genetic content may be explained by the independent origin of B chromosomes in different subgroups of species, with Bs in Holochilus brasiliensis, Nectomys squamipes and N. rattus sharing the OSHR with sex chromosomes, and those in Oligoryzomys

  3. Community Readiness Survey: Norm Development Using a Q-Sort Process

    Science.gov (United States)

    Sharma, Anu; Botzet, Andria M.; Sechrist, Rebecca A. J.; Arthur, Nikki; Winters, Ken C.

    2006-01-01

    This study reports on norms developed for the Minnesota Institute of Public Health's (1999) Community Readiness Survey. Prevention experts from ten states and the Red Lake Nation sorted data from 50 communities into high and low readiness groups using a Q-sort process. High inter-rater agreement was achieved on communities sorted. Tests of…

  4. Perspective Taking and Cognitive Flexibility in the Dimensional Change Card Sorting (DCCS) Task

    Science.gov (United States)

    Kloo, Daniela; Perner, Josef; Aichhorn, Markus; Schmidhuber, Nicola

    2010-01-01

    In a study with 79 3-year-olds, we confirm earlier findings that separating the sorting dimensions improve children's performance on the Dimensional Change Card Sorting (DCCS) task. We also demonstrate that the central reason for this facilitation is that the two sorting dimensions are not integral features of a single object. Spatial separation…

  5. COST EVALUATION OF AUTOMATED AND MANUAL POST- CONSUMER PLASTIC BOTTLE SORTING SYSTEMS

    Science.gov (United States)

    This project evaluates, on the basis of performance and cost, two Automated BottleSort® sorting systems for post-consumer commingled plastic containers developed by Magnetic Separation Systems. This study compares the costs to sort mixed bales of post-consumer plastic at these t...

  6. Experimental investigation of gravity effects on sediment sorting on Mars

    Science.gov (United States)

    Kuhn, Nikolaus J.; Kuhn, Brigitte; Gartmann, Andres

    2016-04-01

    Introduction: Sorting of sedimentary rocks is a proxy for the environmental conditions at the time of deposition, in particular the runoff that moved and deposited the material forming the rocks. Settling of sediment in water is strongly influenced by the gravity of a planetary body. As a consequence, sorting of a sedimentary rock varies with gravity for a given depth and velocity of surface runoff. Theoretical considerations for spheres indicate that sorting is more uniform on Mars than on Earth for runoff of identical depth. In reality, such considerations have to be applied with great caution because the shape of a particle strongly influences drag. Drag itself can only be calculated directly for an irregularly shaped particle with great computational effort, if at all. Therefore, even for terrestrial applications, sediment settling velocities are often determined directly, e.g. by measurements using settling tubes. Experiments: In this study the results of settling tube tests conducted under reduced gravity during three Mars Sedimentation Experiment (MarsSedEx I, II and III) flights, conducted between 2012 and 2015, are presented. Ten types of sediment, ranging in size, shape and density were tested in custom-designed settling tubes during parabolas of Martian gravity lasting 20 to 25 seconds. Results: The experiments conducted during the MarsSedEx reduced gravity experiments showed that the violation of fluid dynamics caused by using empirical models and parameter values developed for sediment transport on Earth lead to significant miscalculations for Mars, specifically an underetsimation of settling velcoity because of an overestimation of turbulant drag. The error is caused by the flawed representation of particle drag on Mars. Drag coefficients are not a property of a sediment particle, but a property of the flow around the particle, and thus strongly affected by gravity. Conlcusions: The observed errors in settling velocity when using terrestrial models

  7. Flow cytometric chromosome sorting from diploid progenitors of bread wheat, T. urartu, Ae. speltoides and Ae. tauschii

    Czech Academy of Sciences Publication Activity Database

    Molnár, I.; Kubaláková, Marie; Šimková, Hana; Farkas, A.; Cseh, A.; Megyeri, M.; Vrána, Jan; Molnár-Láng, M.; Doležel, Jaroslav

    2014-01-01

    Roč. 127, č. 5 (2014), s. 1091-1104. ISSN 0040-5752 R&D Projects: GA ČR GBP501/12/G090; GA MŠk(CZ) LO1204 Grant ostatní: GA MŠk(CZ) ED0007/01/01 Institutional support: RVO:61389030 Keywords : SYNTHETIC HEXAPLOID WHEAT * AEGILOPS-TRITICUM GROUP * GENETIC-LINKAGE MAP Subject RIV: EB - Genetics ; Molecular Biology Impact factor: 3.790, year: 2014

  8. Integration of mate pair sequences to improve shotgun assemblies of flow-sorted chromosome arms of hexaploid wheat

    Czech Academy of Sciences Publication Activity Database

    Belova, T.; Zhan, B.J.; Wright, J.; Caccamo, M.; Asp, T.; Šimková, Hana; Kent, M.; Bendixen, C.; Panitz, F.; Lien, S.; Doležel, Jaroslav; Olsen, O.A.; Sandve, S.R.

    2013-01-01

    Roč. 14, APR 4 2013 (2013). ISSN 1471-2164 R&D Projects: GA ČR(CZ) GAP501/12/2554 Grant ostatní: GA MŠk(CZ) ED0007/01/01 Institutional research plan: CEZ:AV0Z50380511 Keywords : Scaffold * Assembly * Wheat Subject RIV: EB - Genetics ; Molecular Biology Impact factor: 4.041, year: 2013

  9. Retrospective dosimetry using chromosome painting

    International Nuclear Information System (INIS)

    Chromosome aberration frequency measured in peripheral lymphocytes of persons exposed to ionizing radiation has been used since 1960s for dose assessment. Suspected overexposure is usually evaluated by the frequency of dicentrics and centric rings using an appropriate in vitro calibration curve. However, these chromosome aberrations are unstable with time after exposure and dose reconstruction may encounter uncertainties when the time between the exposure and the analysis is considerable or even unknown. It appears that translocations persist with time after exposure and may be used as an indication of acute past overexposures. Moreover, they appear to accumulate the cytogenetical information, which correlates with the dose received under fractionated, chronic or even occupational exposure conditions. Translocations may be detected using G-banding, which allows to score the total amount of radiation induced translocations but it is a time consuming method, or by Chromosome Painting, a method base on the Fluorescence in situ Hybridization (FISH) technique, painting only some chromosome pairs with specific whole chromosome probes and then extrapolating the observed translocation frequencies to the full genome. The latter method allows a faster aberration scoring than G-banding and appears to be the most promissory tool for biodosimetry, particularly when it is necessary to assess low doses and consequently to score a large number of metaphases, e.g. radiation workers exposed within dose limits. As with the unstable chromosome aberration, it is necessary an in vitro calibration curve based on the frequency of stable chromosome aberrations to assess doses. Our laboratory performed calibration curves for Co60 γ-rays based on the frequencies of unstable (dicentrics and centric rings detected by conventional Giemsa staining) and stable chromosome aberrations (translocations and inversions, detected by G-banding). In order to minimize the interlaboratory variability, we

  10. The Reduction of Chromosome Number in Meiosis Is Determined by Properties Built into the Chromosomes

    OpenAIRE

    Paliulis, Leocadia V.; Nicklas, R. Bruce

    2000-01-01

    In meiosis I, two chromatids move to each spindle pole. Then, in meiosis II, the two are distributed, one to each future gamete. This requires that meiosis I chromosomes attach to the spindle differently than meiosis II chromosomes and that they regulate chromosome cohesion differently. We investigated whether the information that dictates the division type of the chromosome comes from the whole cell, the spindle, or the chromosome itself. Also, we determined when chromosomes can switch from ...

  11. Chromosome segregation in plant meiosis

    Directory of Open Access Journals (Sweden)

    Linda eZamariola

    2014-06-01

    Full Text Available Faithful chromosome segregation in meiosis is essential for ploidy stability over sexual life cycles. In plants, defective chromosome segregation caused by gene mutations or other factors leads to the formation of unbalanced or unreduced gametes creating aneuploid or polyploid progeny, respectively. Accurate segregation requires the coordinated execution of conserved processes occurring throughout the two meiotic cell divisions. Synapsis and recombination ensure the establishment of chiasmata that hold homologous chromosomes together allowing their correct segregation in the first meiotic division, which is also tightly regulated by cell-cycle dependent release of cohesin and monopolar attachment of sister kinetochores to microtubules. In meiosis II, bi-orientation of sister kinetochores and proper spindle orientation correctly segregate chromosomes in four haploid cells. Checkpoint mechanisms acting at kinetochores control the accuracy of kinetochore-microtubule attachment, thus ensuring the completion of segregation. Here we review the current knowledge on the processes taking place during chromosome segregation in plant meiosis, focusing on the characterization of the molecular factors involved.

  12. Radiation-induced chromosomal instability

    Energy Technology Data Exchange (ETDEWEB)

    Ritter, S. [GSI, Biophysics, Darmstadt (Germany)

    1999-03-01

    Recent studies on radiation-induced chromosomal instability in the progeny of exposed mammalian cells were briefly described as well as other related studies. For the analysis of chromosomal damage in clones, cells were seeded directly after exposure in cell well-dish to form single cell clones and post-irradiation chromosome aberrations were scored. Both exposure to isoeffective doses of X-ray or 270 MeV/u C-ions (13 keV/{mu}m) increased the number of clones with abnormal karyotype and the increase was similar for X-ray and for C-ions. Meanwhile, in the progeny of cells for mass cultures, there was no indication of a delayed expression of chromosomal damage up to 40 population doublings after the exposure. A high number of aberrant cells were only observed directly after exposure to 10.7 MeV/u O-ions, i.e. in the first cycle cells and decreased with subsequent cell divisions. The reason for these differences in the radiation-induced chromosomal instability between clonal isolates and mass culture has not been clarified. Recent studies indicated that genomic instability occurs at a high frequency in the progeny of cells irradiated with both sparsely and densely ionizing radiation. Such genomic instability is thought likely to increase the risk of carcinogenesis, but more data are required for a well understanding of the health risks resulting from radiation-induced delayed instability. (M.N.)

  13. Dean flow fractionation of chromosomes

    Science.gov (United States)

    Hockin, Matt; Sant, Himanshu J.; Capecchi, Mario; Gale, Bruce K.

    2016-03-01

    Efforts to transfer intact mammalian chromosomes between cells have been attempted for more than 50 years with the consistent result being transfer of sub unit length pieces regardless of method. Inertial microfluidics is a new field that has shown much promise in addressing the fractionation of particles in the 2-20 μm size range (with unknown limits) and separations are based upon particles being carried by curving confined flows (within a spiral shaped, often rectangular flow chamber) and migrating to stable "equilibrium" positions of varying distance from a chamber wall depending on the balance of dean and lift forces. We fabricated spiral channels for inertial microfluidic separations using a standard soft lithography process. The concentration of chromosomes, small contaminant DNA and large cell debris in each outlets were evaluated using microscope (60X) and a flow cytometer. Using Dean Flow Fractionation, we were able to focus 4.5 times more chromosomes in outlet 2 compared to outlet 4 where most of the large debris is found. We recover 16% of the chromosomes in outlet #1- 50% in 2, 23% in 3 and 11% in 4. It should be noted that these estimates of recovery do not capture one piece of information- it actually may be that the chromosomes at each outlet are physically different and work needs to be done to verify this potential.

  14. Chromosomal rearrangement interferes with meiotic X chromosome inactivation

    Czech Academy of Sciences Publication Activity Database

    Homolka, David; Ivánek, Robert; Čapková, Jana; Jansa, Petr; Forejt, Jiří

    2007-01-01

    Roč. 17, č. 10 (2007), s. 1431-1437. ISSN 1088-9051 R&D Projects: GA MŠk(CZ) 1M0520; GA ČR GA301/06/1334; GA ČR GA301/07/1383 Grant ostatní: Howard Hughes Medical Institute(US) HHMI 55000306 Institutional research plan: CEZ:AV0Z50520514 Keywords : chromosomal translocations * meiotic X chromosome inactivation * spermatogenesis Subject RIV: EB - Genetics ; Molecular Biology Impact factor: 11.224, year: 2007

  15. Effect of sex-sorted sperm dosage on conception rates in Holstein heifers and lactating cows.

    Science.gov (United States)

    DeJarnette, J M; Nebel, R L; Marshall, C E; Moreno, J F; McCleary, C R; Lenz, R W

    2008-05-01

    Ejaculates were collected by artificial vagina from 3 Holstein sires and sorted to 90% purity for X-chromosome-bearing spermatozoa (range 88 to 93%) using flow cytometry. Sorted sperm were diluted to 2.1, 3.5, or 5.0 x 10(6) sperm per dose in an egg yolk (20%), Tris, glycerol (7%) extender. Collections were repeated until >600 straws per sperm dose per sire were obtained. Each sperm dose was loaded into color-coded 0.25-mL French straws, with alternate colors used to define treatments across sires. Within sires, straws were packaged at 9 per cane (3 of each color) and strategically allocated to 75 Holstein herds with targets for 50% use in heifers and 50% in lactating cows. Straw color was recorded in the on-farm record-keeping system at the time of insemination. Data were analyzed separately for cows and heifers. Among heifers, a total of 2,125 usable records were retrieved from 51 herds (238 +/- 5.5 services/ sperm dose per sire, range: 218 to 263). Conception rates in heifers were influenced by the sire x sperm dosage interaction. Within sire A, conception rates of heifers were greater for the 5 x 10(6) (59.5%) than for the 2.1 x 10(6) (46.4%) sperm dose and intermediate for the 3.5 x 10(6) sperm dose (52.2%). However, across sires, sperm dosage had no effect on heifer conception rates (46.7, 51.2, and 52.5% for the 2.1, 3.5, and 5.0 x 10(6) sperm dosages, respectively). Among cows, a total of 2,369 services were retrieved from 56 herds (263 +/- 8.8 services/sperm dose per sire, range: 233 to 303). Conception rates of cows (29.4%) were not affected by sire or sperm dosage (27.0, 29.1, and 30.3% for the 2.1, 3.5, and 5.0 x 10(6) sperm dosages, respectively). In conclusion, these data indicate that an increased sperm dosage may enhance virgin heifer conception rates for some (but not all) sires, whereas neither sire nor sexed-sperm dosage affected conception rates of lactating cows. Additional studies of sexed-sperm dosage across a larger sampling of bulls are

  16. NIH Toolbox Cognition Battery (NIHTB-CB): list sorting test to measure working memory.

    Science.gov (United States)

    Tulsky, David S; Carlozzi, Noelle; Chiaravalloti, Nancy D; Beaumont, Jennifer L; Kisala, Pamela A; Mungas, Dan; Conway, Kevin; Gershon, Richard

    2014-07-01

    The List Sorting Working Memory Test was designed to assess working memory (WM) as part of the NIH Toolbox Cognition Battery. List Sorting is a sequencing task requiring children and adults to sort and sequence stimuli that are presented visually and auditorily. Validation data are presented for 268 participants ages 20 to 85 years. A subset of participants (N=89) was retested 7 to 21 days later. As expected, the List Sorting Test had moderately high correlations with other measures of working memory and executive functioning (convergent validity) but a low correlation with a test of receptive vocabulary (discriminant validity). Furthermore, List Sorting demonstrates expected changes over the age span and has excellent test-retest reliability. Collectively, these results provide initial support for the construct validity of the List Sorting Working Memory Measure as a measure of working memory. However, the relationship between the List Sorting Test and general executive function has yet to be determined. PMID:24959983

  17. Escape Artists of the X Chromosome.

    Science.gov (United States)

    Balaton, Bradley P; Brown, Carolyn J

    2016-06-01

    Inactivation of one X chromosome in mammalian females achieves dosage compensation between XX females and XY males; however, over 15% of human X-linked genes continue to be expressed from the inactive X chromosome. New genomic methodologies have improved our identification and characterization of these escape genes, revealing the importance of DNA sequence, chromatin structure, and chromosome ultrastructure in regulating expression from an otherwise inactive chromosome. Study of these exceptions to the rule of silencing highlights the interconnectedness of chromatin and chromosome structure in X-chromosome inactivation (XCI). Recent advances also demonstrate the importance of these genes in sexually dimorphic disease risk, particularly cancer. PMID:27103486

  18. Adults with Chromosome 18 Abnormalities.

    Science.gov (United States)

    Soileau, Bridgette; Hasi, Minire; Sebold, Courtney; Hill, Annice; O'Donnell, Louise; Hale, Daniel E; Cody, Jannine D

    2015-08-01

    The identification of an underlying chromosome abnormality frequently marks the endpoint of a diagnostic odyssey. However, families are frequently left with more questions than answers as they consider their child's future. In the case of rare chromosome conditions, a lack of longitudinal data often makes it difficult to provide anticipatory guidance to these families. The objective of this study is to describe the lifespan, educational attainment, living situation, and behavioral phenotype of adults with chromosome 18 abnormalities. The Chromosome 18 Clinical Research Center has enrolled 483 individuals with one of the following conditions: 18q-, 18p-, Tetrasomy 18p, and Ring 18. As a part of the ongoing longitudinal study, we collect data on living arrangements, educational level attained, and employment status as well as data on executive functioning and behavioral skills on an annual basis. Within our cohort, 28 of the 483 participants have died, the majority of whom have deletions encompassing the TCF4 gene or who have unbalanced rearrangement involving other chromosomes. Data regarding the cause of and age at death are presented. We also report on the living situation, educational attainment, and behavioral phenotype of the 151 participants over the age of 18. In general, educational level is higher for people with all these conditions than implied by the early literature, including some that received post-high school education. In addition, some individuals are able to live independently, though at this point they represent a minority of patients. Data on executive function and behavioral phenotype are also presented. Taken together, these data provide insight into the long-term outcome for individuals with a chromosome 18 condition. This information is critical in counseling families on the range of potential outcomes for their child. PMID:25403900

  19. Automated single cell sorting and deposition in submicroliter drops

    Science.gov (United States)

    Salánki, Rita; Gerecsei, Tamás; Orgovan, Norbert; Sándor, Noémi; Péter, Beatrix; Bajtay, Zsuzsa; Erdei, Anna; Horvath, Robert; Szabó, Bálint

    2014-08-01

    Automated manipulation and sorting of single cells are challenging, when intact cells are needed for further investigations, e.g., RNA or DNA sequencing. We applied a computer controlled micropipette on a microscope admitting 80 PCR (Polymerase Chain Reaction) tubes to be filled with single cells in a cycle. Due to the Laplace pressure, fluid starts to flow out from the micropipette only above a critical pressure preventing the precise control of drop volume in the submicroliter range. We found an anomalous pressure additive to the Laplace pressure that we attribute to the evaporation of the drop. We have overcome the problem of the critical dropping pressure with sequentially operated fast fluidic valves timed with a millisecond precision. Minimum drop volume was 0.4-0.7 μl with a sorting speed of 15-20 s per cell. After picking NE-4C neuroectodermal mouse stem cells and human primary monocytes from a standard plastic Petri dish we could gently deposit single cells inside tiny drops. 94 ± 3% and 54 ± 7% of the deposited drops contained single cells for NE-4C and monocytes, respectively. 7.5 ± 4% of the drops contained multiple cells in case of monocytes. Remaining drops were empty. Number of cells deposited in a drop could be documented by imaging the Petri dish before and after sorting. We tuned the adhesion force of cells to make the manipulation successful without the application of microstructures for trapping cells on the surface. We propose that our straightforward and flexible setup opens an avenue for single cell isolation, critically needed for the rapidly growing field of single cell biology.

  20. Preliminary Results on Sediment Sorting Under Intense Bedload Transport

    Science.gov (United States)

    Hernandez Moreira, R. R.; Vautin, D.; Mathews, S. L.; Kuprenas, R.; Viparelli, E.

    2014-12-01

    Previous experiments show that parallel-laminated deposits are emplaced under upper plane bed regime by the migration of small-amplitude, long-wavelength bedforms. The present research focuses on how sediment is sorted under upper plane bed and sheet flow transport regimes, and whether parallel-lamination is inhibited during sheet flow transport. The problem of studying the sorting of sediment under so intense transport conditions is plagued by the uncertainties related to flow resistances and bedload transport rates. We simplify the problem by first running the experiments with uniform sediment, to establish a baseline that will aid in the design of the experiments with poorly sorted material. We are running experiments at the Hydraulics Laboratory of the Department of Civil and Environmental Engineering at the University of South Carolina in Columbia, in a unidirectional sediment-feed flume, 9 meters long by 0.2 meters wide, of which 7 meters are used as test section. During the experiments, water surface and bed elevations are periodically measured to characterize the global parameters of the flow, e.g. mean flow velocity and bed shear stress. When the flow and the sediment transport reach conditions of mobile bed equilibrium, bed elevation fluctuations are measured with ultrasonic transducer systems at six fixed locations. Channel bed aggradation is then induced by slowly raising the tail gate of the flume such that there is no change in transport regime, as confirmed by additional measurements of water surface and bed elevation and bed elevation fluctuations. Preliminary observations under upper plane bed regime show the formation of the small-amplitude and long-wavelength bedforms, as well as hints of parallel lamination in the deposits. In the near future we aim to achieve sheet flow transport conditions with both uniform and non-uniform grain size distributions to look at the internal structure of the emplaced deposit.

  1. Study for standardization of the lighting system in fruit sorting

    Science.gov (United States)

    Gomes, J. F. S.; Baldner, F. O.; Costa, P. B.; Guedes, M. B.; Oliveira, I. A. A.; Leta, F. R.

    2016-07-01

    Sorting is a very important step in the fruit processing. The attributes definition and characterization are important for both marketing and end user, making it necessary to establish regulations for classification and standardization in order to unify the language of the market and enabling a more efficient market and also increase consumer awareness. For this end, it is necessary to standardize the technical criteria that can change the perception of the product. Studies have been developed in order to standardize a methodology to determine the subclass of fruit ripening, evaluating the influence of different light sources in the subclass evaluation.

  2. Increased Sorting and Wage Inequality in the Czech Republic

    DEFF Research Database (Denmark)

    Eriksson, Tor Viking; Pytlikova, Mariola; Warzynski, Frederic

    In this paper, we look at the evolution of firms' wage structures using a linked employer-employee dataset, which has longitudinal information for firms and covers a large fraction of the Czech labor market during the period 1998-2006. We first look at the evolution of individual wage determination...... increasingly decentralized wage bargaining, skill biased technological change and a changing educational composition of the workforce. We find some support for that all these factors have contributed to the changes in the Czech wage structure, and that increased sorting is strongly associated with the observed...

  3. Increased Sorting and Wage Inequality in the Czech Republic

    DEFF Research Database (Denmark)

    Eriksson, Tor; Pytlikova, Mariola; Warzynski, Frederic Michel Patrick

    2013-01-01

    This paper makes use of a linked employer–employee dataset to examine the evolution of wage inequality in the Czech Republic during 1998–2006. We find evidence of slightly increasing returns to human capital and diminishing gender inequality and document sharp increases in both within-firm and......-firm inequality whereas we find no evidence that increased international trade at the industry level is associated with higher betweenor within-firm wage inequality. The key factors driving the observed increase in wage inequality are increased educational sorting and the inflow of foreign firms to the Czech...... Republic....

  4. A Special Sort of Forgetting: Negation in Freud and Augustine.

    Science.gov (United States)

    Rosengart, Daniel

    2016-04-01

    The development from a positive, dualistic theory of memory and forgetting to a concept of memory that includes forgetting as a variety of remembering is traced in two thinkers. Freud's concept of repression is discussed as a complex negation of both remembering and forgetting, and the development of this construct is shown in his letters to Wilhelm Fliess. A close reading of Augustine of Hippo's Confessions shows a similar concept of a special sort of forgetting, in which what is forgotten is remembered nonetheless. Finally, the limits of the comparison are discussed, and a reading of Freud's "Negation" reveals ways in which the unconscious is fundamentally unlike Augustine's interiority. PMID:27009296

  5. SIMD Compression and the Intersection of Sorted Integers

    OpenAIRE

    Lemire, Daniel; Boytsov, Leonid; Kurz, Nathan

    2014-01-01

    Sorted lists of integers are commonly used in inverted indexes and database systems. They are often compressed in memory. We can use the SIMD instructions available in common processors to boost the speed of integer compression schemes. Our S4-BP128-D4 scheme uses as little as 0.7 CPU cycles per decoded integer while still providing state-of-the-art compression. However, if the subsequent processing of the integers is slow, the effort spent on optimizing decoding speed can be wasted. To show ...

  6. The Sorting of Female Careers after First Birth

    DEFF Research Database (Denmark)

    Arntz, Melanie; Dlugosz, Stephan; Wilke, Ralf A.

    A number of contributions have found evidence for motherhood being a critical life event for women's employment careers. This study presents a detailed model for the du- ration of maternity leave in which young mothers can make a transition into a number of states related to employment and...... unemployment among others. The model incorporates a large number of factors including the legal framework, individual and firm character- istics. We provide a comprehensive picture of the sorting mechanisms that lead to the differentiation of women's employment careers after birth. Our empirical evidence is de...

  7. Making chromosome abnormalities treatable conditions.

    Science.gov (United States)

    Cody, Jannine DeMars; Hale, Daniel Esten

    2015-09-01

    Individuals affected by the classic chromosome deletion syndromes which were first identified at the beginning of the genetic age, are now positioned to benefit from genomic advances. This issue highlights five of these conditions (4p-, 5p-, 11q-, 18p-, and 18q-). It focuses on the increased in understanding of the molecular underpinnings and envisions how these can be transformed into effective treatments. While it is scientifically exciting to see the phenotypic manifestations of hemizygosity being increasingly understood at the molecular and cellular level, it is even more amazing to consider that we are now on the road to making chromosome abnormalities treatable conditions. PMID:26351122

  8. Using Chromosomes to Teach Evolution: Chromosomal Rearrangements in Speciation Events.

    Science.gov (United States)

    Offner, Susan

    1994-01-01

    Uses diagrams to aid in discussing how the English map of the human chromosomes, published by Offner in 1993, can be used to illustrate some important questions in evolution, as well as give students a glimpse into some of the mechanisms underlying evolutionary change. (ZWH)

  9. BioNano genome mapping of individual chromosomes supports physical mapping and sequence assembly in complex plant genomes.

    Science.gov (United States)

    Staňková, Helena; Hastie, Alex R; Chan, Saki; Vrána, Jan; Tulpová, Zuzana; Kubaláková, Marie; Visendi, Paul; Hayashi, Satomi; Luo, Mingcheng; Batley, Jacqueline; Edwards, David; Doležel, Jaroslav; Šimková, Hana

    2016-07-01

    The assembly of a reference genome sequence of bread wheat is challenging due to its specific features such as the genome size of 17 Gbp, polyploid nature and prevalence of repetitive sequences. BAC-by-BAC sequencing based on chromosomal physical maps, adopted by the International Wheat Genome Sequencing Consortium as the key strategy, reduces problems caused by the genome complexity and polyploidy, but the repeat content still hampers the sequence assembly. Availability of a high-resolution genomic map to guide sequence scaffolding and validate physical map and sequence assemblies would be highly beneficial to obtaining an accurate and complete genome sequence. Here, we chose the short arm of chromosome 7D (7DS) as a model to demonstrate for the first time that it is possible to couple chromosome flow sorting with genome mapping in nanochannel arrays and create a de novo genome map of a wheat chromosome. We constructed a high-resolution chromosome map composed of 371 contigs with an N50 of 1.3 Mb. Long DNA molecules achieved by our approach facilitated chromosome-scale analysis of repetitive sequences and revealed a ~800-kb array of tandem repeats intractable to current DNA sequencing technologies. Anchoring 7DS sequence assemblies obtained by clone-by-clone sequencing to the 7DS genome map provided a valuable tool to improve the BAC-contig physical map and validate sequence assembly on a chromosome-arm scale. Our results indicate that creating genome maps for the whole wheat genome in a chromosome-by-chromosome manner is feasible and that they will be an affordable tool to support the production of improved pseudomolecules. PMID:26801360

  10. Characterization of chromosome structures of Falconinae (Falconidae, Falconiformes, Aves) by chromosome painting and delineation of chromosome rearrangements during their differentiation

    OpenAIRE

    Nishida, Chizuko; Ishijima, Junko; KOSAKA, Ayumi; Tanabe, Hideyuki; Habermann, Felix A.; Griffin, Darren K.; MATSHUDA, Yoichi; 秀之, 田辺

    2008-01-01

    Karyotypes of most bird species are characterized by around 2n = 80 chromosomes, comprising 7–10 pairs of large- and medium-sized macrochromosomes including sex chromosomes and numerous morphologically indistinguishable microchromosomes. The Falconinae of the Falconiformes has a different karyotype from the typical avian karyotype in low chromosome numbers, little size difference between macrochromosomes and a smaller number of microchromosomes. To characterize chromosome structures of Falcon...

  11. Characterization of chromosome structures of Falconinae (Falconidae, Falconiformes, Aves) by chromosome painting and delineation of chromosome rearrangements during their differentiation

    OpenAIRE

    Nishida, Chizuko; Ishijima, Junko; KOSAKA, Ayumi; Tanabe, Hideyuki; Habermann, Felix A.; Griffin, Darren K.; Matsuda, Yoichi

    2008-01-01

    Karyotypes of most bird species are characterized by around 2n = 80 chromosomes, comprising 7Y10 pairs of large- and medium-sized macrochromosomes including sex chromosomes and numerous morphologically indistinguishable microchromosomes. The Falconinae of the Falconiformes has a different karyotype from the typical avian karyotype in low chromosome numbers, little size difference between macrochromosomes and a smaller number of microchromosomes. To characterize chromosome structures of Falcon...

  12. Karyotypic evolution and phylogenetic relationships in the order Chiroptera as revealed by G-banding comparison and chromosome painting.

    Science.gov (United States)

    Ao, Lei; Mao, Xiuguang; Nie, Wenhui; Gu, Xiaoming; Feng, Qing; Wang, Jinhuan; Su, Weiting; Wang, Yingxiang; Volleth, Marianne; Yang, Fengtang

    2007-01-01

    Bats are a unique but enigmatic group of mammals and have a world-wide distribution. The phylogenetic relationships of extant bats are far from being resolved. Here, we investigated the karyotypic relationships of representative species from four families of the order Chiroptera by comparative chromosome painting and banding. A complete set of painting probes derived from flow-sorted chromosomes of Myotis myotis (family Vespertilionidae) were hybridized onto metaphases of Cynopterus sphinx (2n = 34, family Pteropodidae), Rhinolophus sinicus (2n=36, family Rhinolophidae) and Aselliscus stoliczkanus (2n=30, family Hipposideridae) and delimited 27, 30 and 25 conserved chromosomal segments in the three genomes, respectively. The results substantiate that Robertsonian translocation is the main mode of chromosome evolution in the order Chiroptera, with extensive conservation of whole chromosomal arms. The use of M. myotis (2n=44) probes has enabled the integration of C. sphinx, R. sinicus and A. stoliczkanus chromosomes into the previously established comparative maps between human and Eonycteris spelaea (2n=36), Rhinolophus mehelyi (2n=58), Hipposideros larvatus (2n=32), and M. myotis. Our results provide the first cytogenetic signature rearrangement that supports the grouping of Pteropodidae and Rhinolophoidea in a common clade (i.e. Pteropodiformes or Yinpterochiroptera) and thus improve our understanding on the karyotypic relationships and genome phylogeny of these bat species. PMID:17310301

  13. Effects of 2.1 and 3.5x10(6) sex-sorted sperm dosages on conception rates of Holstein cows and heifers.

    Science.gov (United States)

    DeJarnette, J M; McCleary, C R; Leach, M A; Moreno, J F; Nebel, R L; Marshall, C E

    2010-09-01

    The objective was to compare conceptions rates of Holstein cows and heifers after artificial insemination (AI) with 2.1 or 3.5x10(6) sex-sorted sperm or 15x10(6) conventional sperm. Ejaculates collected from 7 Holstein sires were cryopreserved conventionally at 15x10(6) sperm per dose or sorted to 90% purity for X-chromosome-bearing spermatozoa using flow cytometry and cryopreserved at either 2.1 or 3.5x10(6) sperm per dose. All treatments were processed in an egg-yolk (20%), Tris, glycerol (7%) extender and packaged in color-coded 0.25-mL French straws. Straws (n=700 straws/dosage per sire) were packaged and distributed in aliquots of 12 (4 straws/sperm dosage) to 69 Holstein herds with an across-herd goal of achieving approximately 50% use in heifers and cows. Straw color was recorded in the on-farm recordkeeping system at the time of AI and retrieved by electronic download. Data for cows and heifers were analyzed separately. Among heifers, 6,268 services were retrieved from 45 herds (298+/-4.2 services/sperm dose per sire; range: 244 to 344). Conception rate of heifers was influenced by the sire by treatment interaction. Conception rate of the 2.1 and 3.5x10(6) sex-sorted sperm dosages were comparable in 6 of 7 sires. Conception rate of both sex-sorted dosages were less than those of conventional semen for 6 of 7 sires. Across sires, heifer conception rates for 2.1 and 3.5x10(6) sex-sorted sperm dosages and 15x10(6) conventional dosages were 44, 46, and 61%, respectively. Among cows, 5,466 services were retrieved from 52 herds (260+/-3.3 services/sperm dose per sire; range: 236 to 289). Conception rates of cows were influenced by herd, sire, and sperm dosage. Conception rates of the 2.1 and 3.5x10(6) sex-sorted sperm dosage were comparable for all 7 sires. Conception rates of 2.1x10(6) sex-sorted sperm dosage were less than those of conventional semen for 4 of 7 sires and conception rates of the 3.5x10(6) sex-sorted sperm dosage were less than those of

  14. Design and construction of automatic sorting station with machine vision

    Directory of Open Access Journals (Sweden)

    Oscar D. Velasco-Delgado

    2014-01-01

    Full Text Available This article presents the design, construction and testing of an automatic product sorting system in belt conveyor with machine vision that integrates Free and Open Source Software technology and Allen Bradley commercial equipment. Requirements are defined to determine features such as: mechanics of manufacturing station, an app of product sorting with machine vision and for automation system. For the app of machine vision a library is used for optical digital image processing Open CV, for the mechanical design of the manufacturing station is used the CAD tool Solid Edge and for the design and implementation of automation ISA standards are used along with an automation engineering project methodology integrating a PLC, an inverter, a Panel View and a DeviceNet Network. Performance tests are shown by classifying bottles and PVC pieces in four established types, the behavior of the integrated system is checked so as the efficiency of the same. The processing time on machine vision is 0.290 s on average for a piece of PVC, a capacity of 206 accessories per minute, for bottles was obtained a processing time of 0.267 s, a capacity of 224 bottles per minute. A maximum mechanical performance is obtained with 32 products per minute (1920 products/hour with the conveyor to 22 cm/s and 40 cm of distance between products obtaining an average error of 0.8%.

  15. Order-sorting filter transmittance measured with an array detector

    Science.gov (United States)

    Heaney, James B.; Bradley, Scott E.; Bly, Vincent T.; Ewin, Audrey J.; La, Anh T.

    1993-01-01

    The simultaneous measurement of the spectrally and spatially variant transmittance of a linear variable order-sorting filter in a manner that closely resembles its conditions of actual use is described. The transmittance of a prototype order-sorting filter was measured in the 400- to 880-nm wavelength region by illuminating it with the output beam of a spectrophotometer while the filter was attached to the front of a 30 x 32 pixel silicon array detector. The filter was designed to be used in the output beam of a grating spectrometer to prevent the dispersal of higher diffracted orders onto an array detector. Areas of the filter that were spatially matched to the corresponding detector pixel column had measured peak transmittances of about 90 percent that were uniform to within +/- 1.5 percent along a given column. Transmittances for incident wavelengths shorter than the desired bandpass, corresponding to the order overlap region, were measured in the 0.003 range. Line spread function measurements made with the array detector indicated no significant beam spreading caused by inserting the filter into the beam.

  16. Optically induced electrokinetic concentration and sorting of colloids

    International Nuclear Information System (INIS)

    We demonstrate an optically induced ac electrokinetic technique that rapidly and continuously accumulates colloids on a parallel-plate electrode surface resulting in a crystalline-like aggregation. Electrothermal hydrodynamics produce a microfluidic vortex that carries suspended particles toward its center where they are trapped by local ac electrokinetic hydrodynamic forces. We characterize the rate of particle aggregation as a function of the applied ac voltage, ac frequency and illumination intensity. Hundreds of polystyrene particles (1.0 µm) suspended in a low conductivity solution (2.4 mS m−1) were captured at a range of voltages (5–20 Vpp) and frequencies (20–150 kHz) with an optical power of approximately 20 mW. This technique was not restricted to near infrared (1064 nm) illumination and was also demonstrated at 532 nm. The sorting capability of this technique was demonstrated with a solution containing 0.5 µm, 1.0 µm and 2.0 µm polystyrene particles. This dynamic optically induced technique rapidly concentrates, sorts and translates colloidal aggregates with a simple parallel-plate electrode configuration and can be used for a variety of lab-on-a-chip applications

  17. Measurement, sorting and tuning of LCLS undulator magnets

    International Nuclear Information System (INIS)

    Currently, a Linac Coherent Light Source (LCLS) prototype undulator is under construction. The prototype is a 3.4-m-long hybrid-type undulator with fixed gap of 6 mm. The period length is 30 mm and the number of poles is 226. For this undulator, 450 NdFeB magnet blocks are used. This project does not have demanding requirements for multipole component errors, but the field strength at x=0 should be as precise as possible to provide proper particle steering and phase errors. The first set of magnetic blocks has been measured. The strength and direction of magnetization of the magnet blocks are measured using a Helmholtz coil system. In addition to this, Hall probe measurements are performed for magnet blocks while they are mounted in a specially designed cassette with vanadium-permendur poles. The magnet blocks will be sorted using these data to minimize errors. Computer simulations show that magnets may be sorted in decreasing strengths with little or no additional tuning of the undulators

  18. Fast polyhedral cell sorting for interactive rendering of unstructured grids

    Energy Technology Data Exchange (ETDEWEB)

    Combra, J; Klosowski, J T; Max, N; Silva, C T; Williams, P L

    1998-10-30

    Direct volume rendering based on projective methods works by projecting, in visibility order, the polyhedral cells of a mesh onto the image plane, and incrementally compositing the cell's color and opacity into the final image. Crucial to this method is the computation of a visibility ordering of the cells. If the mesh is ''well-behaved'' (acyclic and convex), then the MPVO method of Williams provides a very fast sorting algorithm; however, this method only computes an approximate ordering in general datasets, resulting in visual artifacts when rendered. A recent method of Silva et al. removed the assumption that the mesh is convex, by means of a sweep algorithm used in conjunction with the MPVO method; their algorithm is substantially faster than previous exact methods for general meshes. In this paper we propose a new technique, which we call BSP-XMPVO, which is based on a fast and simple way of using binary space partitions on the boundary elements of the mesh to augment the ordering produced by MPVO. Our results are shown to be orders of magnitude better than previous exact methods of sorting cells.

  19. Mathematical glimpse on the Y chromosome degeneration

    Science.gov (United States)

    Lobo, M. P.

    2006-04-01

    The Y chromosomes are genetically degenerate and do not recombine with their matching partners X. Non-recombination of XY pairs has been pointed out as the key factor for the degeneration of the Y chromosome. The aim here is to show that there is a mathematical asymmetry in sex chromosomes which leads to the degeneration of Y chromosomes even in the absence of XX and XY recombination. A model for sex-chromosome evolution in a stationary regime is proposed. The consequences of their asymmetry are analyzed and lead us to a couple of conclusions. First, Y chromosome degeneration shows up sqrt{2} more often than X chromosome degeneration. Second, if nature prohibits female mortalities from beeing exactly 50%, then Y chromosome degeneration is inevitable.

  20. CHROMOSOMAL MULTIPLICITY IN BURKHOLDERIA CEPACIA

    Science.gov (United States)

    We have used CHEF gel electrophoresis to screen preparations of large DNA from different Burkholderia cepacia isolates for the presence of DNA species corresponding to the linearized forms of the three chromosomes of 3.4,2.5, and 0.9 Mb identified in B. cepacia strain 17616. DNA ...

  1. Vibrio chromosome-specific families

    DEFF Research Database (Denmark)

    Lukjancenko, Oksana; Ussery, David

    2014-01-01

    We have compared chromosome-specific genes in a set of 18 finished Vibrio genomes, and, in addition, also calculated the pan- and core-genomes from a data set of more than 250 draft Vibrio genome sequences. These genomes come from 9 known species and 2 unknown species. Within the finished...

  2. Chromosome Territory Modeller and Viewer.

    Science.gov (United States)

    Tkacz, Magdalena A; Chromiński, Kornel; Idziak-Helmcke, Dominika; Robaszkiewicz, Ewa; Hasterok, Robert

    2016-01-01

    This paper presents ChroTeMo, a tool for chromosome territory modelling, accompanied by ChroTeVi-a chromosome territory visualisation software that uses the data obtained by ChroTeMo. These tools have been developed in order to complement the molecular cytogenetic research of interphase nucleus structure in a model grass Brachypodium distachyon. Although the modelling tool has been initially created for one particular species, it has universal application. The proposed version of ChroTeMo allows for generating a model of chromosome territory distribution in any given plant or animal species after setting the initial, species-specific parameters. ChroTeMo has been developed as a fully probabilistic modeller. Due to this feature, the comparison between the experimental data on the structure of a nucleus and the results obtained from ChroTeMo can indicate whether the distribution of chromosomes inside a nucleus is also fully probabilistic or is subjected to certain non-random patterns. The presented tools have been written in Python, so they are multiplatform, portable and easy to read. Moreover, if necessary they can be further developed by users writing their portions of code. The source code, documentation, and wiki, as well as the issue tracker and the list of related articles that use ChroTeMo and ChroTeVi, are accessible in a public repository at Github under GPL 3.0 license. PMID:27505434

  3. Chromosome Territory Modeller and Viewer

    Science.gov (United States)

    Idziak-Helmcke, Dominika; Robaszkiewicz, Ewa; Hasterok, Robert

    2016-01-01

    This paper presents ChroTeMo, a tool for chromosome territory modelling, accompanied by ChroTeVi–a chromosome territory visualisation software that uses the data obtained by ChroTeMo. These tools have been developed in order to complement the molecular cytogenetic research of interphase nucleus structure in a model grass Brachypodium distachyon. Although the modelling tool has been initially created for one particular species, it has universal application. The proposed version of ChroTeMo allows for generating a model of chromosome territory distribution in any given plant or animal species after setting the initial, species-specific parameters. ChroTeMo has been developed as a fully probabilistic modeller. Due to this feature, the comparison between the experimental data on the structure of a nucleus and the results obtained from ChroTeMo can indicate whether the distribution of chromosomes inside a nucleus is also fully probabilistic or is subjected to certain non-random patterns. The presented tools have been written in Python, so they are multiplatform, portable and easy to read. Moreover, if necessary they can be further developed by users writing their portions of code. The source code, documentation, and wiki, as well as the issue tracker and the list of related articles that use ChroTeMo and ChroTeVi, are accessible in a public repository at Github under GPL 3.0 license. PMID:27505434

  4. Multicolor spectral karyotyping of human chromosomes.

    Science.gov (United States)

    Schröck, E; du Manoir, S; Veldman, T; Schoell, B; Wienberg, J; Ferguson-Smith, M A; Ning, Y; Ledbetter, D H; Bar-Am, I; Soenksen, D; Garini, Y; Ried, T

    1996-07-26

    The simultaneous and unequivocal discernment of all human chromosomes in different colors would be of significant clinical and biologic importance. Whole-genome scanning by spectral karyotyping allowed instantaneous visualization of defined emission spectra for each human chromosome after fluorescence in situ hybridization. By means of computer separation (classification) of spectra, spectrally overlapping chromosome-specific DNA probes could be resolved, and all human chromosomes were simultaneously identified. PMID:8662537

  5. CHROMOSOMAL ABNORMALITIES IN PATIENTS WITH SPERM DISORDERS

    OpenAIRE

    L. Y. Pylyp; L. A. Spinenko; V. D. Zukin; N. M. Bilko

    2013-01-01

    Chromosomal abnormalities are among the most common genetic causes of spermatogenic disruptions. Carriers of chromosomal abnormalities are at increased risk of infertility, miscarriage or birth of a child with unbalanced karyotype due to the production of unbalanced gametes. The natural selection against chromosomally abnormal sperm usually prevents fertilization with sperm barring in cases of serious chromosomal abnormalities. However, assisted reproductive technologies in general and intrac...

  6. Evolution of sex chromosomes ZW of Schistosoma mansoni inferred from chromosome paint and BAC mapping analyses.

    Science.gov (United States)

    Hirai, Hirohisa; Hirai, Yuriko; LoVerde, Philip T

    2012-12-01

    Chromosomes of schistosome parasites among digenetic flukes have a unique evolution because they exhibit the sex chromosomes ZW, which are not found in the other groups of flukes that are hermaphrodites. We conducted molecular cytogenetic analyses for investigating the sex chromosome evolution using chromosome paint analysis and BAC clones mapping. To carry this out, we developed a technique for making paint probes of genomic DNA from a single scraped chromosome segment using a chromosome microdissection system, and a FISH mapping technique for BAC clones. Paint probes clearly identified each of the 8 pairs of chromosomes by a different fluorochrome color. Combination analysis of chromosome paint analysis with Z/W probes and chromosome mapping with 93 BAC clones revealed that the W chromosome of Schistosoma mansoni has evolved by at least four inversion events and heterochromatinization. Nine of 93 BAC clones hybridized with both the Z and W chromosomes, but the locations were different between Z and W chromosomes. The homologous regions were estimated to have moved from the original Z chromosome to the differentiated W chromosome by three inversions events that occurred before W heterohcromatinization. An inversion that was observed in the heterochromatic region of the W chromosome likely occurred after W heterochromatinization. These inversions and heterochromatinization are hypothesized to be the key factors that promoted the evolution of the W chromosome of S. mansoni. PMID:22831897

  7. Chromosome Aberrations by Heavy Ions

    Science.gov (United States)

    Ballarini, Francesca; Ottolenghi, Andrea

    It is well known that mammalian cells exposed to ionizing radiation can show different types of chromosome aberrations (CAs) including dicentrics, translocations, rings, deletions and complex exchanges. Chromosome aberrations are a particularly relevant endpoint in radiobiology, because they play a fundamental role in the pathways leading either to cell death, or to cell conversion to malignancy. In particular, reciprocal translocations involving pairs of specific genes are strongly correlated (and probably also causally-related) with specific tumour types; a typical example is the BCR-ABL translocation for Chronic Myeloid Leukaemia. Furthermore, aberrations can be used for applications in biodosimetry and more generally as biomarkers of exposure and risk, that is the case for cancer patients monitored during Carbon-ion therapy and astronauts exposed to space radiation. Indeed hadron therapy and astronauts' exposure to space radiation represent two of the few scenarios where human beings can be exposed to heavy ions. After a brief introduction on the main general features of chromosome aberrations, in this work we will address key aspects of the current knowledge on chromosome aberration induction, both from an experimental and from a theoretical point of view. More specifically, in vitro data will be summarized and discussed, outlining important issues such as the role of interphase death/mitotic delay and that of complex-exchange scoring. Some available in vivo data on cancer patients and astronauts will be also reported, together with possible interpretation problems. Finally, two of the few available models of chromosome aberration induction by ionizing radiation (including heavy ions) will be described and compared, focusing on the different assumptions adopted by the authors and on how these models can deal with heavy ions.

  8. A case of trisomy of chromosome 15

    OpenAIRE

    Coldwell, S; Fitzgerald, B.; Semmens, J.M.; Ede, R; Bateman, C

    1981-01-01

    We describe a case of trisomy of chromosome 15 in an infant who presented at birth with numerous abnormalities. As far as we are aware this chromosomal abnormality has not been described before. On the basis of this one case there appear to be no features which are specific to this chromosomal abnormality.

  9. A First Generation Comparative Chromosome Map between Guinea Pig (Cavia porcellus) and Humans.

    Science.gov (United States)

    Romanenko, Svetlana A; Perelman, Polina L; Trifonov, Vladimir A; Serdyukova, Natalia A; Li, Tangliang; Fu, Beiyuan; O'Brien, Patricia C M; Ng, Bee L; Nie, Wenhui; Liehr, Thomas; Stanyon, Roscoe; Graphodatsky, Alexander S; Yang, Fengtang

    2015-01-01

    The domesticated guinea pig, Cavia porcellus (Hystricomorpha, Rodentia), is an important laboratory species and a model for a number of human diseases. Nevertheless, genomic tools for this species are lacking; even its karyotype is poorly characterized. The guinea pig belongs to Hystricomorpha, a widespread and important group of rodents; so far the chromosomes of guinea pigs have not been compared with that of other hystricomorph species or with any other mammals. We generated full sets of chromosome-specific painting probes for the guinea pig by flow sorting and microdissection, and for the first time, mapped the chromosomal homologies between guinea pig and human by reciprocal chromosome painting. Our data demonstrate that the guinea pig karyotype has undergone extensive rearrangements: 78 synteny-conserved human autosomal segments were delimited in the guinea pig genome. The high rate of genome evolution in the guinea pig may explain why the HSA7/16 and HSA16/19 associations presumed ancestral for eutherians and the three syntenic associations (HSA1/10, 3/19, and 9/11) considered ancestral for rodents were not found in C. porcellus. The comparative chromosome map presented here is a starting point for further development of physical and genetic maps of the guinea pig as well as an aid for genome assembly assignment to specific chromosomes. Furthermore, the comparative mapping will allow a transfer of gene map data from other species. The probes developed here provide a genomic toolkit, which will make the guinea pig a key species to unravel the evolutionary biology of the Hystricomorph rodents. PMID:26010445

  10. Chromosomal instability in Streptomyces avermitilis: major deletion in the central region and stable circularized chromosome

    Directory of Open Access Journals (Sweden)

    Wen Ying

    2010-07-01

    Full Text Available Abstract Background The chromosome of Streptomyces has been shown to be unstable, frequently undergoing gross chromosomal rearrangements. However, the mechanisms underlying this phenomenon remain unclear, with previous studies focused on two chromosomal ends as targets for rearrangements. Here we investigated chromosomal instability of Streptomyces avermitilis, an important producer of avermectins, and characterized four gross chromosomal rearrangement events, including a major deletion in the central region. The present findings provide a valuable contribution to the mechanistic study of genetic instability in Streptomyces. Results Thirty randomly-selected "bald" mutants derived from the wild-type strain all contained gross chromosomal rearrangements of various types. One of the bald mutants, SA1-8, had the same linear chromosomal structure as the high avermectin-producing mutant 76-9. Chromosomes of both strains displayed at least three independent chromosomal rearrangements, including chromosomal arm replacement to form new 88-kb terminal inverted repeats (TIRs, and two major deletions. One of the deletions eliminated the 36-kb central region of the chromosome, but surprisingly did not affect viability of the cells. The other deletion (74-kb was internal to the right chromosomal arm. The chromosome of another bald mutant, SA1-6, was circularized with deletions at both ends. No obvious homology was found in all fusion sequences. Generational stability analysis showed that the chromosomal structure of SA1-8 and SA1-6 was stable. Conclusions Various chromosomal rearrangements, including chromosomal arm replacement, interstitial deletions and chromosomal circularization, occurred in S. avermitilis by non-homologous recombination. The finding of an inner deletion involving in the central region of S. avermitilis chromosome suggests that the entire Streptomyces chromosome may be the target for rearrangements, which are not limited, as previously

  11. The origin of human chromosome 2 analyzed by comparative chromosome mapping with a DNA microlibrary

    OpenAIRE

    Wienberg, Johannes; Jauch, Anna; Lüdecke, H J; Senger, G; Horsthemke, B; Claussen, U; Cremer, Thomas; Arnold, N.; Lengauer, Christoph

    1994-01-01

    Fluorescencein situ hybridization (FISH) of microlibraries established from distinct chromosome subregions can test the evolutionary conservation of chromosome bands as well as chromosomal rearrangements that occurred during primate evolution and will help to clarify phylogenetic relationships. We used a DNA library established by microdissection and microcloning from the entire long arm of human chromosome 2 for fluorescencein situ hybridization and comparative mapping of the chromosomes of ...

  12. Deterministic Parallel Sorting Algorithm for 2-D Mesh of Connected Computers

    Directory of Open Access Journals (Sweden)

    Hamed A. Rjoub

    2008-01-01

    Full Text Available Sorting is one of the most important operations in database systems and its efficiency can influences drastically the overall system performance. To accelerate the performance of database systems, parallelism is applied to the execution of the data administration operations. We propose a new deterministic Parallel Sorting Algorithm (DPSA that improves the performance of Quick sort in sorting an array of size n. where we use p Processor Elements (PE that work in parallel to sort a matrix r*c where r is the number of rows r = 3 and c is the number of columns c = n/3. The simulation results show that the performance of the proposed algorithm DPSA out performs Quick sort when it works sequentially.

  13. Temporal genomic evolution of bird sex chromosomes

    DEFF Research Database (Denmark)

    Wang, Zongji; Zhang, Jilin; Yang, Wei;

    2014-01-01

    driving forces of Z chromosome evolution, we analyze here 45 newly available bird genomes and four species' transcriptomes, over their course of recombination loss between the sex chromosomes. RESULTS: We show Z chromosomes in general have a significantly higher substitution rate in introns and synonymous...... evolved very recently. CONCLUSIONS: In conclusion, we uncover that the sequence and expression patterns of Z chromosome genes covary with their ages of becoming Z-linked. In contrast to the mammalian X chromosomes, such patterns are mainly driven by mutational bias and genetic drift in birds, due...... to the opposite sex-biased inheritance of Z vs. X....

  14. Holoprosencephaly due to numeric chromosome abnormalities.

    Science.gov (United States)

    Solomon, Benjamin D; Rosenbaum, Kenneth N; Meck, Jeanne M; Muenke, Maximilian

    2010-02-15

    Holoprosencephaly (HPE) is the most common malformation of the human forebrain. When a clinician identifies a patient with HPE, a routine chromosome analysis is often the first genetic test sent for laboratory analysis in order to assess for a structural or numerical chromosome anomaly. An abnormality of chromosome number is overall the most frequently identified etiology in a patient with HPE. These abnormalities include trisomy 13, trisomy 18, and triploidy, though several others have been reported. Such chromosome number abnormalities are almost universally fatal early in gestation or in infancy. Clinical features of specific chromosome number abnormalities may be recognized by phenotypic manifestations in addition to the HPE. PMID:20104610

  15. Novel insights into mitotic chromosome condensation

    Science.gov (United States)

    Piskadlo, Ewa; Oliveira, Raquel A.

    2016-01-01

    The fidelity of mitosis is essential for life, and successful completion of this process relies on drastic changes in chromosome organization at the onset of nuclear division. The mechanisms that govern chromosome compaction at every cell division cycle are still far from full comprehension, yet recent studies provide novel insights into this problem, challenging classical views on mitotic chromosome assembly. Here, we briefly introduce various models for chromosome assembly and known factors involved in the condensation process (e.g. condensin complexes and topoisomerase II). We will then focus on a few selected studies that have recently brought novel insights into the mysterious way chromosomes are condensed during nuclear division.

  16. Automatic Color Sorting Machine Using TCS230 Color Sensor And PIC Microcontroller

    OpenAIRE

    Kunhimohammed C K; Muhammed Saifudeen K K; Sahna S; Gokul M S; Shaeez Usman Abdulla

    2015-01-01

    Sorting of products is a very difficult industrial process. Continuous manual sorting creates consistency issues. This paper describes a working prototype designed for automatic sorting of objects based on the color. TCS230 sensor was used to detect the color of the product and the PIC16F628A microcontroller was used to control the overall process. The identification of the color is based on the frequency analysis of the output of TCS230 sensor. Two conveyor belts were used, each ...

  17. Performance pay, wages and tenure:the relative role of incentives and sorting

    OpenAIRE

    Green, Colin; John S. Heywood

    2009-01-01

    While performance pay is associated with increased worker productivity and earning, the relative size of the sorting and incentive effects remains in doubt. Resolving this doubt is important as incentive effects imply welfare increases that may be absent in sorting. This paper uses UK labour force data to provide the broadest evidence to date on the relative size of performance pay’s incentive and sorting effects on wages. Our contribution is twofold. First, we demonstrate that wage increases...

  18. Iterative sorting for four-dimensional CT images based on internal anatomy motion

    OpenAIRE

    Zeng, Rongping; Fessler, Jeffrey A.; Balter, James M.; Balter, Peter A.

    2008-01-01

    Current four-dimensional (4D) computed tomography (CT) imaging techniques using multi-slice CT scanners require retrospective sorting of the reconstructed two-dimensional (2D) CT images. Most existing sorting methods depend on externally monitored breathing signals recorded by extra instruments. External signals may not always accurately capture the breathing status and may lead to severe discontinuity artifacts in the sorted CT volumes. This paper describes a method to find the temporal corr...

  19. Comparison Of Hybrid Sorting Algorithms Implemented On Different Parallel Hardware Platforms

    OpenAIRE

    Dominik Zurek; Marcin Pietron; Maciej Wielgosz; Kazimierz Wiatr

    2013-01-01

    Sorting is a common problem in computer science. There are lot of well-known sorting algorithms created for sequential execution on a single processor. Recently, hardware platforms enable to create wide parallel algorithms. We have standard processors consist of multiple cores and hardware accelerators like GPU. The graphic cards with their parallel architecture give new possibility to speed up many algorithms. In this paper we describe results of implementation of a few different sorting alg...

  20. Sorting mixed polymers from end of life products by a selective grinding process

    OpenAIRE

    FROELICH, Daniel; Maris, Elisabeth; RENARD, Henri

    2010-01-01

    European policy on waste and market demand for material are driving the development of sorting techniques adapted to automobiles and electric products at the end of their lifetimes. In this article, we present work on polymer sorting using selective grinding. Selective grinding is an operation that consists in sorting polymers after shredding. Specific particle size distributions characterize each polymer in the output stream and these differences are used to recover certain polymers by si...

  1. Microfluidic sorting and multimodal typing of cancer cells in self-assembled magnetic arrays

    OpenAIRE

    Saliba, Antoine-Emmanuel; Saias, Laure; Psychari, Eleni; Minc, Nicolas; Simon, Damien; Bidard, François-Clément; Mathiot, Claire; Pierga, Jean-Yves; Fraisier, Vincent; Salamero, Jean; Saada, Véronique; Farace, Françoise; Vielh, Philippe; Malaquin, Laurent; Viovy, Jean-Louis

    2010-01-01

    We propose a unique method for cell sorting, “Ephesia,” using columns of biofunctionalized superparamagnetic beads self-assembled in a microfluidic channel onto an array of magnetic traps prepared by microcontact printing. It combines the advantages of microfluidic cell sorting, notably the application of a well controlled, flow-activated interaction between cells and beads, and those of immunomagnetic sorting, notably the use of batch-prepared, well characterized antibody-bearing beads. On c...

  2. Encapsulation of sex sorted boar semen: sperm membrane status and oocyte penetration parameters.

    Science.gov (United States)

    Spinaci, Marcella; Chlapanidas, Theodora; Bucci, Diego; Vallorani, Claudia; Perteghella, Sara; Lucconi, Giulia; Communod, Ricardo; Vigo, Daniele; Galeati, Giovanna; Faustini, Massimo; Torre, Maria Luisa

    2013-03-01

    Although sorted semen is experimentally used for artificial, intrauterine, and intratubal insemination and in vitro fertilization, its commercial application in swine species is still far from a reality. This is because of the low sort rate and the large number of sperm required for routine artificial insemination in the pig, compared with other production animals, and the greater susceptibility of porcine spermatozoa to stress induced by the different sex sorting steps and the postsorting handling protocols. The encapsulation technology could overcome this limitation in vivo, protecting and allowing the slow release of low-dose sorted semen. The aim of this work was to evaluate the impact of the encapsulation process on viability, acrosome integrity, and on the in vitro fertilizing potential of sorted boar semen. Our results indicate that the encapsulation technique does not damage boar sorted semen; in fact, during a 72-hour storage, no differences were observed between liquid-stored sorted semen and encapsulated sorted semen in terms of plasma membrane (39.98 ± 14.38% vs. 44.32 ± 11.72%, respectively) and acrosome integrity (74.32 ± 12.17% vs. 66.07 ± 10.83%, respectively). Encapsulated sorted spermatozoa presented a lower penetration potential than nonencapsulated ones (47.02% vs. 24.57%, respectively, P 0.05) was observed in terms of total efficiency of fertilization expressed as normospermic oocytes/total oocytes (18.45% vs. 15.43% for sorted diluted and sorted encapsulated semen, respectively). The encapsulation could be an alternative method of storing of pig sex sorted spermatozoa and is potentially a promising technique in order to optimize the use of low dose of sexed spermatozoa in vivo. PMID:23261305

  3. Optimization of magnet sorting in a storage ring using genetic algorithms

    International Nuclear Information System (INIS)

    In this paper, the genetic algorithms are applied to the optimization problem of magnet sorting in an electron storage ring, according to which the objectives are set so that the closed orbit distortion and beta beating can be minimized and the dynamic aperture maximized. The sorting of dipole, quadrupole and sextupole magnets is optimized while the optimization results show the power of the application of genetic algorithms in magnet sorting. (authors)

  4. Spike sorting of heterogeneous neuron types by multimodality-weighted PCA and explicit robust variational Bayes

    OpenAIRE

    Takashi eTakekawa; Yoshikazu eIsomura; Tomoki eFukai

    2012-01-01

    This study introduces a new spike sorting method that classifies spike waveforms from multiunit recordings into spike trains of individual neurons. In particular, we develop a method to sort a spike mixture generated by a heterogeneous neural population. Such a spike sorting has a significant practical value, but was previously difficult. The method combines a feature extraction method, which we may term “multimodality-weighted principal component analysis” (mPCA), and a clustering method by ...

  5. Hrs Recognizes a Hydrophobic Amino Acid Cluster in Cytokine Receptors during Ubiquitin-independent Endosomal Sorting*

    OpenAIRE

    Amano, Yuji; Yamashita, Yuki; Kojima, Katsuhiko; Yoshino, Kazuhisa; Tanaka, Nobuyuki; Sugamura, Kazuo; Takeshita, Toshikazu

    2011-01-01

    Hepatocyte growth factor-regulated tyrosine kinase substrate (Hrs) is a component of the ESCRT-0 protein complex that captures ubiquitylated cargo proteins and sorts them to the lysosomal pathway. Although Hrs acts as a key transporter for ubiquitin-dependent endosomal sorting, we previously reported that Hrs is also involved in ubiquitin-independent endosomal sorting of interleukin-2 receptor β (IL-2Rβ). Here, we show direct interactions between bacterially expressed Hrs and interleukin-4 re...

  6. Interfering with interferon receptor sorting and trafficking: impact on signaling.

    Science.gov (United States)

    Claudinon, Julie; Monier, Marie-Noëlle; Lamaze, Christophe

    2007-01-01

    Interferons (IFNs) and their receptors (IFN-Rs) play fundamental roles in a multitude of biological functions. Many articles and reviews emphasize that the JAK/STAT machinery is obligatory for relay of the information transmitted by IFNs after binding to their cognate receptors at the plasma membrane. In contrast, very few studies have addressed the endocytosis and the intracellular trafficking of IFN-Rs, the immediate step following IFN binding. However, recent findings have shed light on the importance of IFN-R sorting and trafficking in the control of IFN signaling. Thus, IFN-Rs can be included in the growing family of signaling receptors for which regulation of biological activity critically involves endocytosis and trafficking. PMID:17493737

  7. Microvortex for focusing, guiding and sorting of particles.

    Science.gov (United States)

    Hsu, Chia-Hsien; Di Carlo, Dino; Chen, Chihchen; Irimia, Daniel; Toner, Mehmet

    2008-12-01

    We report a microvortex manipulator (MVM) that is a passive, scalable system with great potential for the manipulation and separation of particulate samples in microfluidic environments. The movement of particles is determined by a unique combination of helical flow, buoyant, and gravitational forces. Helical flows are induced by topographically patterned microchannel surfaces, which have previously been used for molecular mixing in microfluidic devices. We illustrate the mechanism of MVM and its applications in passive focusing of beads and cells into parallel streams and guiding of particles and cells. We also explore the application of the unique density-selectivity of microvortex focusing and successfully sort a mixture of two bead populations whose density difference is as small as 0.1 g cm(-3). PMID:19023476

  8. Preconcentration of uranium ores by radio-metric sorting

    International Nuclear Information System (INIS)

    The uranium ore chemical treatment plant at Bessines-sur-Gartempe is supplied entirely by the La Crouzille Mining Division of the French Atomic Energy Commission mainly from mining districts of Fanay, Margnac and Le BRUGEAUD in the Limousin province and also, for the remainder, by a certain amount of private production in the 'Massif Central'. The supply mixture, which is very heterogeneous, is enriched before being treated chemically. The pre-concentration operation is carried out in the divisions ore treatment work-shop. It consists in a stone removal operation using radiometric sorting along a continuous belt; this makes it possible to eliminate 50 pour cent of the only fraction which is thus treated - that from 50 to 120 mm; it represents 15 to 20 per cent of the total tonnage supplied to the plant. (authors)

  9. Improved Sorting Scheme of Microstructure of Fly Ash

    Institute of Scientific and Technical Information of China (English)

    王立刚; 彭苏平

    2002-01-01

    Aiming at the problem of the existing sorting for microstructure of flyash, an improved scheme was put forward in this paper. First, fly ash particles are divided into four groups as low-calcium, iron, high calcium and char particle acco rding to the substance components of fly ash. Then fly ash particles are divided into 14 sub-groups, for example: cenospheres, plerospheres, solid spheres, porous char and dense char based on their chemical composition, shape and the chara cteristics of inner-structure of fly ash. It has a distinct difference in granu le configuration, inner-structure and substance components. Some disadvantages of the existing scheme such as unilateralism and imprecision have been overcome in the advanced schemes.

  10. Health-related criteria for nuclear-waste sorting

    International Nuclear Information System (INIS)

    Why is it appropriate to sort nuclear waste from the health point of view? This is required to create for each category of waste the conditions most likely to prevent, restrict or delay the migration of waste into the environment until its radioactivity disappears, with the view of safeguarding human health. Doing this helps to avoid both the deterministic effects (i.e. effects with definite threshold doses occurring soon after exposure) and the delayed, random (or stochastic) effects of radiation. Whatever the case, human beings may only incorporate radionuclides or be irradiated at very low doses and very low dose rates. The corresponding calculated doses are more than an order of magnitude lower than natural irradiation (2.5 milli-sieverts per annum), and several orders of magnitude lower than doses seen to have an effect on health after chronic irradiation (several hundred milli-sieverts). (author)

  11. Lateral Chirality-sorting Optical Spin Forces in Evanescent Fields

    CERN Document Server

    Hayat, Amaury; Capasso, Federico

    2014-01-01

    The unusual transverse component of the spin angular momentum of evanescent waves gives rise to lateral forces on chiral particles, which have the surprising property of acting in a direction in which there is neither a field gradient nor wave propagation. The direction of these forces is opposite for particles with opposite helicities, such that they may be useful for optically-induced enantiomer separation with a single beam, and the reliance on an evanescent field makes them a natural choice for sorting within an integrated optical circuit. The magnitude of these forces substantially exceeds those of the recently predicted sideways optical forces acting on non-chiral objects in evanescent fields and on chiral objects in propagating fields near a surface, such that they may more readily offer an experimental confirmation of lateral optical forces.

  12. Late endosomes: sorting and partitioning in multivesicular bodies.

    Science.gov (United States)

    Piper, R C; Luzio, J P

    2001-09-01

    Late endosomes, which have the morphological characteristics of multivesicular bodies, have received relatively little attention in comparison with early endosomes and lysosomes. Recent work in mammalian and yeast cells has given insights into their structure and function, including the generation of their multivesicular morphology. Lipid partitioning to create microdomains enriched in specific lipids is observed in late endosomes, with some lumenal vesicles enriched in lysobisphosphatidic acid and others in phosphatidylinositol 3-phosphate. Sorting of membrane proteins into the lumenal vesicles may occur because of the properties of their trans-membrane domains, or as a result of tagging with ubiquitin. Yeast class E Vps proteins and their mammalian orthologs are the best candidates to make up the protein machinery that controls inward budding, a process that starts in early endosomes. Late endosomes are able to undergo homotypic fusion events and also heterotypic fusion with lysosomes, a process that delivers endocytosed macromolecules for proteolytic degradation. PMID:11555415

  13. Identification and sorting of materials with portable LIBS before decommissioning

    International Nuclear Information System (INIS)

    Laser Induced Breakdown Spectroscopy (LIBS) is a technique of elemental analysis. A laser beam is focused on the surface of the sample to be analyzed. A small quantity of matter is ablated and a plasma formed by the atomized compounds is created. The spectral lines of the light emitted by the plasma are detected by an optical spectrometer. LIBS is a fully optical, multi-elementary and fast analytical technique, requiring no or little sample preparation. These features make the LIBS technique particularly suited for in situ measurements, and portable instruments are currently developed. LIBS analysis can be applied to the identification of materials using chemometric statistical methods (multivariate analysis) connecting the spectrum to the nature of the sample. Such methods have been successfully applied in our laboratory to the determination of the geographical origin of yellow cakes and to the identification of alloys. We present here the work performed with a portable LIBS instrument to meet the needs of waste sorting in industrial domain and in nuclear domain (inventory before decommissioning). A data base of LIBS spectra was built with a commercial instrument (IVEA SAS Easylibs) with samples of four categories of interest for industrial waste sorting: alloys, plastics, concrete and glasses. Different correct identification rates are requested by categories. The alloy spectra contain characteristic spectral lines and sub-categories can be easily discriminated (for example, different steel classes can be identified). The components of the plastics (mainly C, H, O and N) give rise to less characteristic lines and the plastics identification requires a separate study. Supervised statistical models are built with the data base spectra and predictions are instantly calculated for the spectra of unknown materials to identify in order to direct them to the correct waste stream. (authors)

  14. Comparison of GVHD in different sorts of bone marrow transplantation

    International Nuclear Information System (INIS)

    Objective: To study GVHD in different sorts of BMT. Methods: C57BL/6 recipient mice irradiated with 60Co were transfused with donor cells via the tail vein. The general manifestation and pathological changes of GVHD were observed. The hematopoietic function was evaluated with the spleen node count under microscope, semi-solid agar CFU-GM assay and peripheral blood WBC count. the C banding technique was used to detect the chimeric rate in different sorts of BMT. Results: The survival rate on day 30 in syngeneic group or mixed half-matched group was higher than two other groups. The GVHD reaction was strong in allogeneic group, to a less extent in half-matched group, and the least in mixed half-matched group. Spleen node count on day 13 showed no significant difference between the syngeneic and the mixed half-matched group although both groups had larger numbers than the allogeneic or the half-matched group. The chimeric rate in mixed half-matched group was not different from the half-matched group on day 18, while it was higher in the mixed half-matched group on day 30. The extent of mixed lymphocyte reaction in vivo was in descending sequence in allogeneic, half-matched, mixed half-matched and syngeneic BMT group. The peripheral blood WBC count and bone marrow CFU-GM assay showed no significant difference among other groups except that they are lower in the allogeneic group. Conclusion: Half-matched and mixed half-matched BMT could alleviate the GVHD reaction

  15. Transient Microgeographic Clines during B Chromosome Invasion.

    Science.gov (United States)

    Camacho, Juan Pedro M; Shaw, Michael W; Cabrero, Josefa; Bakkali, Mohammed; Ruíz-Estévez, Mercedes; Ruíz-Ruano, Francisco J; Martín-Blázquez, Rubén; López-León, María Dolores

    2015-11-01

    The near-neutral model of B chromosome evolution predicts that the invasion of a new population should last some tens of generations, but the details on how it proceeds in real populations are mostly unknown. Trying to fill this gap, we analyze here a natural population of the grasshopper Eyprepocnemis plorans at three time points during the last 35 years. Our results show that B chromosome frequency increased significantly during this period and that a cline observed in 1992 had disappeared in 2012 once B chromosome frequency reached an upper limit at all sites sampled. This indicates that, during B chromosome invasion, transient clines for B chromosome frequency are formed at the invasion front on a microgeographic scale. Computer simulation experiments showed that the pattern of change observed for genotypic frequencies is consistent with the existence of B chromosome drive through females and selection against individuals with a high number of B chromosomes. PMID:26655780

  16. Mitosis. Microtubule detyrosination guides chromosomes during mitosis.

    Science.gov (United States)

    Barisic, Marin; Silva e Sousa, Ricardo; Tripathy, Suvranta K; Magiera, Maria M; Zaytsev, Anatoly V; Pereira, Ana L; Janke, Carsten; Grishchuk, Ekaterina L; Maiato, Helder

    2015-05-15

    Before chromosomes segregate into daughter cells, they align at the mitotic spindle equator, a process known as chromosome congression. Centromere-associated protein E (CENP-E)/Kinesin-7 is a microtubule plus-end-directed kinetochore motor required for congression of pole-proximal chromosomes. Because the plus-ends of many astral microtubules in the spindle point to the cell cortex, it remains unknown how CENP-E guides pole-proximal chromosomes specifically toward the equator. We found that congression of pole-proximal chromosomes depended on specific posttranslational detyrosination of spindle microtubules that point to the equator. In vitro reconstitution experiments demonstrated that CENP-E-dependent transport was strongly enhanced on detyrosinated microtubules. Blocking tubulin tyrosination in cells caused ubiquitous detyrosination of spindle microtubules, and CENP-E transported chromosomes away from spindle poles in random directions. Thus, CENP-E-driven chromosome congression is guided by microtubule detyrosination. PMID:25908662

  17. CHROMOSOMAL ABNORMALITIES IN PATIENTS WITH RECURRENT MISCARRIAGE

    Directory of Open Access Journals (Sweden)

    Daniela Mierla

    2012-06-01

    Full Text Available Chromosomal abnormalities are involved in the etiology of recurrent spontaneous pregnancy loss and sub-fertility. The purpose of this study was to determine the frequency and contribution of chromosomal abnormalities in recurrent miscarriages. The results obtained and literature review are helpful in understanding the importance of cytogenetics analysis of female infertility. To investigate the distribution of chromosomal abnormalities in the Romanian population with recurrent miscarriage, karyotype analysis by G-banding was performed from peripheral blood in 967 women infertility. Results: Chromosomal abnormalities were found to 79 women (8,17%. The percentage of chromosomal abnormalities in the studied population correlates with the data in the literature. Chromosomal abnormalities could play the important role in etiology of infertility and are more frequently detected in this group of patients compared to general population. In the infertile couples balanced chromosomal abnormalities are the main cause of spontaneous abortions.

  18. [The evolution of human Y chromosome].

    Science.gov (United States)

    Yang, Xianrong; Wang, Meiqin; Li, Shaohua

    2014-09-01

    The human Y chromosome is always intriguing for researchers, because of its role in gender determination and its unusual evolutionary history. The Y chromosome evolves from an autosome, and its evolution has been characterized by massive gene decay. The lack of recombination and protein-coding genes and high content of repetitive sequences have hindered the progress in our understanding of the Y chromosome biology. Recently, with the advances in comparative genomics and sequencing technology, the research on Y chromosome has become a hotspot, with an intensified debate about Y-chromosome final destination resulting from degeneration. This review focuses on the structure, inheritance characteristics, gene content, and the origin and evolution of Y chromosome. We also discuss the long-term destiny of Y chromosome. PMID:25252301

  19. Dynamics of chromosome segregation in Escherichia coli

    DEFF Research Database (Denmark)

    Nielsen, Henrik Jørck

    2007-01-01

    Since the 1960’es the conformation and segregation of the chromosome in Escherichia coli has been a subject of interest for many scientists. However, after 40 years of research, we still know incredibly little about how the chromosome is organized inside the cell, how it manages to duplicate this...... and reliable method enabled us to start the analysis on the distribution of various chromosomal loci inside slowly growing cells. With the actual counting and measuring no longer being any problem we could easily analyze 14 loci distributed on the E.coli chromosome. More than 15.000 cells were...... on the P1 par system. Using the new system, which is based on the pMT1 par system from Yersenia pestis, we labeled loci on opposite sides of the E.coli chromosome simultaneously and were able to show that the E.coli chromosome is organized with one chromosomal arm in each cell half. This astounding...

  20. Microdissection and chromosome painting of the alien chromosome in an addition line of wheat-Thinopyrum intermedium

    Science.gov (United States)

    The chromosome painting is an efficient tool for chromosome research. However, plant chromosome painting is relatively underdeveloped. In this study, chromosome painting was developed and used to identify alien chromosomes in TAi-27, a wheat-Thinopyrum intermedium addition line, and chromosomes of...

  1. International workshop of chromosome 19

    Energy Technology Data Exchange (ETDEWEB)

    Pericak-Vance, M.A. (Duke Univ. Medical Center, Durham, NC (United States). Div. of Neurology); Carrano, A.J. (Lawrence Livermore National Lab., CA (United States))

    1991-09-16

    This document summarizes the workshop on physical and genetic mapping of chromosome 19. The first session discussed the major disease loci found on the chromosome. The second session concentrated on reference families, markers and linkage maps. The third session concentrated on radiation hybrid mapping, somatic cell hybrid panels, macro restriction maps and YACs, followed by cDNA and long range physical maps. The fourth session concentrated on compiling consensus genetic and physical maps as well as discussing regions of conflict. The final session dealt with the LLNL cosmid contig database and comparative mapping of homologous regions of the human and mouse genomes, and ended with a discussion of resource sharing. 18 refs., 2 figs. (MHB)

  2. Baseline chromosome aberrations in children

    Czech Academy of Sciences Publication Activity Database

    Merlo, D.F.; Ceppi, M.; Stagi, E.; Bocchini, V.; Šrám, Radim; Rössner st., Pavel

    2007-01-01

    Roč. 172, - (2007), s. 60-67. ISSN 0378-4274 Grant ostatní: EU(EU) 2002-02198; EU(EU) 2005-016320 Institutional research plan: CEZ:AV0Z50390512 Source of funding: R - rámcový projekt EK ; R - rámcový projekt EK Keywords : chromosome aberrations * children * molecular epidemiology Subject RIV: DN - Health Impact of the Environment Quality Impact factor: 2.826, year: 2007

  3. Clonality - X Chromosome Inactivation Assay

    OpenAIRE

    sprotocols

    2014-01-01

    Author: Molecular Profiling Initiative, NCI This method was successful in our lab using prostate tissue and for our specific objectives. Investigators must be aware that they will need to tailor the following protocol for their own research objectives and tissue under study. Investigators can utilize X chromosome inactivation (methylation) to determine the clonality status of a tumor or premalignant lesion in females. The technique is based on a methylation-sensitive restriction enzym...

  4. Hobo transposons causing chromosomal breakpoints.

    OpenAIRE

    Ladevèze, V; Aulard, S.; Chaminade, N; Périquet, G; Lemeunier, F

    1998-01-01

    Several laboratory surveys have shown that transposable elements (TEs) can cause chromosomal breaks and lead to inversions, as in dysgenic crosses involving P-elements. However, it is not presently clear what causes inversions in natural populations of Drosophila. The only direct molecular studies must be taken as evidence against the involvement of mobile elements. Here, in Drosophila lines transformed with the hobo transposable element, and followed for 100 generations, we show the appearan...

  5. Chromosomal instability determines taxane response

    OpenAIRE

    Swanton, Charles; Nicke, Barbara; Schuett, Marion; Eklund, Aron C.; Ng, Charlotte; Li, Qiyuan; Hardcastle, Thomas; Lee, Alvin; Roy, Rajat; East, Philip; Kschischo, Maik; Endesfelder, David; Wylie, Paul; Kim, Se Nyun; Chen, Jie-Guang

    2009-01-01

    Microtubule-stabilizing (MTS) agents, such as taxanes, are important chemotherapeutics with a poorly understood mechanism of action. We identified a set of genes repressed in multiple cell lines in response to MTS agents and observed that these genes are overexpressed in tumors exhibiting chromosomal instability (CIN). Silencing 22/50 of these genes, many of which are involved in DNA repair, caused cancer cell death, suggesting that these genes are involved in the survival of aneuploid cells....

  6. Chromosome aberration assays in Allium

    Energy Technology Data Exchange (ETDEWEB)

    Grant, W.F.

    1982-01-01

    The common onion (Allium cepa) is an excellent plant for the assay of chromosome aberrations after chemical treatment. Other species of Allium (A. cepa var. proliferum, A. carinatum, A. fistulosum and A. sativum) have also been used but to a much lesser extent. Protocols have been given for using root tips from either bulbs or seeds of Allium cepa to study the cytological end-points, such as chromosome breaks and exchanges, which follow the testing of chemicals in somatic cells. It is considered that both mitotic and meiotic end-points should be used to a greater extent in assaying the cytogenetic effects of a chemical. From a literature survey, 148 chemicals are tabulated that have been assayed in 164 Allium tests for their clastogenic effect. Of the 164 assays which have been carried out, 75 are reported as giving a positive reaction, 49 positive and with a dose response, 1 positive and temperature-related, 9 borderline positive, and 30 negative; 76% of the chemicals gave a definite positive response. It is proposed that the Allium test be included among those tests routinely used for assessing chromosomal damage induced by chemicals.

  7. Chromosome rearrangements and transposable elements.

    Science.gov (United States)

    Lonnig, Wolf-Ekkehard; Saedler, Heinz

    2002-01-01

    There has been limited corroboration to date for McClintock's vision of gene regulation by transposable elements (TEs), although her proposition on the origin of species by TE-induced complex chromosome reorganizations in combination with gene mutations, i.e., the involvement of both factors in relatively sudden formations of species in many plant and animal genera, has been more promising. Moreover, resolution is in sight for several seemingly contradictory phenomena such as the endless reshuffling of chromosome structures and gene sequences versus synteny and the constancy of living fossils (or stasis in general). Recent wide-ranging investigations have confirmed and enlarged the number of earlier cases of TE target site selection (hot spots for TE integration), implying preestablished rather than accidental chromosome rearrangements for nonhomologous recombination of host DNA. The possibility of a partly predetermined generation of biodiversity and new species is discussed. The views of several leading transposon experts on the rather abrupt origin of new species have not been synthesized into the macroevolutionary theory of the punctuated equilibrium school of paleontology inferred from thoroughly consistent features of the fossil record. PMID:12429698

  8. Chromosome arm-specific BAC end sequences permit comparative analysis of homoeologous chromosomes and genomes of polyploid wheat

    Directory of Open Access Journals (Sweden)

    Sehgal Sunish K

    2012-05-01

    Full Text Available Abstract Background Bread wheat, one of the world’s staple food crops, has the largest, highly repetitive and polyploid genome among the cereal crops. The wheat genome holds the key to crop genetic improvement against challenges such as climate change, environmental degradation, and water scarcity. To unravel the complex wheat genome, the International Wheat Genome Sequencing Consortium (IWGSC is pursuing a chromosome- and chromosome arm-based approach to physical mapping and sequencing. Here we report on the use of a BAC library made from flow-sorted telosomic chromosome 3A short arm (t3AS for marker development and analysis of sequence composition and comparative evolution of homoeologous genomes of hexaploid wheat. Results The end-sequencing of 9,984 random BACs from a chromosome arm 3AS-specific library (TaaCsp3AShA generated 11,014,359 bp of high quality sequence from 17,591 BAC-ends with an average length of 626 bp. The sequence represents 3.2% of t3AS with an average DNA sequence read every 19 kb. Overall, 79% of the sequence consisted of repetitive elements, 1.38% as coding regions (estimated 2,850 genes and another 19% of unknown origin. Comparative sequence analysis suggested that 70-77% of the genes present in both 3A and 3B were syntenic with model species. Among the transposable elements, gypsy/sabrina (12.4% was the most abundant repeat and was significantly more frequent in 3A compared to homoeologous chromosome 3B. Twenty novel repetitive sequences were also identified using de novo repeat identification. BESs were screened to identify simple sequence repeats (SSR and transposable element junctions. A total of 1,057 SSRs were identified with a density of one per 10.4 kb, and 7,928 junctions between transposable elements (TE and other sequences were identified with a density of one per 1.39 kb. With the objective of enhancing the marker density of chromosome 3AS, oligonucleotide primers were successfully designed from

  9. Comparative analysis of sex chromosomes in Leporinus species (Teleostei, Characiformes) using chromosome painting

    Science.gov (United States)

    2013-01-01

    Background The Leporinus genus, belonging to the Anostomidae family, is an interesting model for studies of sex chromosome evolution in fish, particularly because of the presence of heteromorphic sex chromosomes only in some species of the genus. In this study we used W chromosome-derived probes in a series of cross species chromosome painting experiments to try to understand events of sex chromosome evolution in this family. Results W chromosome painting probes from Leporinus elongatus, L. macrocephalus and L. obtusidens were hybridized to each others chromosomes. The results showed signals along their W chromosomes and the use of L. elongatus W probe against L. macrocephalus and L. obtusidens also showed signals over the Z chromosome. No signals were observed when the later aforementioned probe was used in hybridization procedures against other four Anostomidae species without sex chromosomes. Conclusions Our results demonstrate a common origin of sex chromosomes in L. elongatus, L. macrocephalus and L. obtusidens but suggest that the L. elongatus chromosome system is at a different evolutionary stage. The absence of signals in the species without differentiated sex chromosomes does not exclude the possibility of cryptic sex chromosomes, but they must contain other Leporinus W sequences than those described here. PMID:23822802

  10. Whole chromosome painting of B chromosomes of the red-eye tetra Moenkhausia sanctaefilomenae (Teleostei, Characidae)

    Science.gov (United States)

    Scudeler, Patricia Elda Sobrinho; Diniz, Débora; Wasko, Adriane Pinto; Oliveira, Claudio; Foresti, Fausto

    2015-01-01

    Abstract B chromosomes are dispensable genomic elements found in different groups of animals and plants. In the present study, a whole chromosome probe was generated from a specific heterochromatic B chromosome occurring in cells of the characidae fish Moenkhausia sanctaefilomenae (Steindachner, 1907). The chromosome painting probes were used in fluorescence in situ hybridization (FISH) experiments for the assessment of metaphase chromosomes obtained from individuals from three populations of Moenkhausia sanctaefilomenae. The results revealed that DNA sequences were shared between a specific B chromosome and many chromosomes of the A complement in all populations analyzed, suggesting a possible intra-specific origin of these B chromosomes. However, no hybridization signals were observed in other B chromosomes found in the same individuals, implying a possible independent origin of B chromosome variants in this species. FISH experiments using 18S rDNA probes revealed the presence of non-active ribosomal genes in some B chromosomes and in some chromosomes of the A complement, suggesting that at least two types of B chromosomes had an independent origin. The role of heterochromatic segments and ribosomal sequences in the origin of B chromosomes were discussed. PMID:26753081

  11. Chromosomal divergence and evolutionary inferences in Rhodniini based on the chromosomal location of ribosomal genes

    Directory of Open Access Journals (Sweden)

    Sebastian Pita

    2013-05-01

    Full Text Available In this study, we used fluorescence in situ hybridisation to determine the chromosomal location of 45S rDNA clusters in 10 species of the tribe Rhodniini (Hemiptera: Reduviidae: Triatominae. The results showed striking inter and intraspecific variability, with the location of the rDNA clusters restricted to sex chromosomes with two patterns: either on one (X chromosome or both sex chromosomes (X and Y chromosomes. This variation occurs within a genus that has an unchanging diploid chromosome number (2n = 22, including 20 autosomes and 2 sex chromosomes and a similar chromosome size and genomic DNA content, reflecting a genome dynamic not revealed by these chromosome traits. The rDNA variation in closely related species and the intraspecific polymorphism in Rhodnius ecuadoriensis suggested that the chromosomal position of rDNA clusters might be a useful marker to identify recently diverged species or populations. We discuss the ancestral position of ribosomal genes in the tribe Rhodniini and the possible mechanisms involved in the variation of the rDNA clusters, including the loss of rDNA loci on the Y chromosome, transposition and ectopic pairing. The last two processes involve chromosomal exchanges between both sex chromosomes, in contrast to the widely accepted idea that the achiasmatic sex chromosomes of Heteroptera do not interchange sequences.

  12. Chromosome analysis of arsenic affected cattle

    Directory of Open Access Journals (Sweden)

    S. Shekhar

    2014-10-01

    Full Text Available Aim: The aim was to study the chromosome analysis of arsenic affected cattle. Materials and Methods: 27 female cattle (21 arsenic affected and 6 normal were selected for cytogenetical study. The blood samples were collected, incubated, and cultured using appropriate media and specific methods. The samples were analyzed for chromosome number and morphology, relative length of the chromosome, arm ratio, and centromere index of X chromosome and chromosomal abnormalities in arsenic affected cattle to that of normal ones. Results: The diploid number of metaphase chromosomes in arsenic affected cattle as well as in normal cattle were all 2n=60, 58 being autosomes and 2 being sex chromosomes. From the centromeric position, karyotyping studies revealed that all the 29 pair of autosomes was found to be acrocentric or telocentric, and the sex chromosomes (XX were submetacentric in both normal and arsenic affected cattle. The relative length of all the autosome pairs and sex chrosomosome pair was found to be higher in normal than that of arsenic affected cattle. The mean arm ratio of X-chromosome was higher in normal than that of arsenic affected cattle, but it is reverse in case of centromere index value of X-chromosome. There was no significant difference of arm ratio and centromere index of X-chromosomes between arsenic affected and normal cattle. No chromosomal abnormalities were found in arsenic affected cattle. Conclusion: The chromosome analysis of arsenic affected cattle in West Bengal reported for the first time in this present study which may serve as a guideline for future studies in other species. These reference values will also help in comparison of cytological studies of arsenic affected cattle to that of various toxicants.

  13. The peripheral chromosome scaffold, a novel structural component of mitotic chromosomes.

    Science.gov (United States)

    Sheval, Eugene V; Polyakov, Vladimir Y

    2008-06-01

    Using an original high-salt extraction protocol, we observed a novel chromosome substructure, referred to as the peripheral chromosome scaffold. This chromosome domain contained the perichromosomal layer proteins pKi-67, B23/nucleophosmin and fibrillarin, but no DNA fragments (i.e., the loop domain bases were not associated with the peripheral scaffold). Modern models of chromosome organization do not predict the existence of a peripheral chromosome scaffold domain, and thus our observations have conceptual implications for understanding chromosome architecture. PMID:18337132

  14. Experimental evidence of a buoyant mass difference between bovine spermatozoa bearing X- and Y-chromosomes using a micromechanical resonator.

    Science.gov (United States)

    Mauro, Marco; Battaglia, Raffaele; Ferrini, Gianluca; Puglisi, Roberto; Balduzzi, Donatella; Galli, Andrea

    2014-03-01

    Flow cytometry is to date the only commercially viable technique for sex preselection of mammalian spermatozoa, measuring the different DNA content in X- and Y-chromosome bearing spermatozoa. Here we present experimental evidence of a measurable difference between bovine spermatozoa bearing X- and Y-chromosomes based on their buoyant mass. Single cells of two populations of flow-cytometrically sorted spermatozoa were analyzed by means of a micromechanical resonator, consisting of a suspended doubly-clamped microcapillary. Spermatozoa buoyant mass is related to the transitory variation in vibration phase lag, caused by the passage through the sensitive area of a single sperm cell suspended in a fluid. Data analysis shows two well-separated distributions and provides evidence of the sensor capabilities to detect the buoyant mass of single cells with such accuracy to distinguish X- and Y-chromosome bearing spermatozoa. These preliminary results suggest the possibility to develop an intriguing technique alternative to flow cytometry in the field of sperm sorting. PMID:24419052

  15. Viable cell sorting of dinoflagellates by multi-parametric flow cytometry.

    Science.gov (United States)

    Electronic cell sorting for isolation and culture of dinoflagellates and other marine eukaryotic phytoplankton was compared to the traditional method of manually picking of cells using a micropipette. Trauma to electronically sorted cells was not a limiting factor as fragile dinoflagellates, such a...

  16. The Methods and Goals of Teaching Sorting Algorithms in Public Education

    Science.gov (United States)

    Bernát, Péter

    2014-01-01

    The topic of sorting algorithms is a pleasant subject of informatics education. Not only is it so because the notion of sorting is well known from our everyday life, but also because as an algorithm task, whether we expect naive or practical solutions, it is easy to define and demonstrate. In my paper I will present some of the possible methods…

  17. pSort search result - KOME | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available [ Credits ] BLAST Search ... Image Search ... Home About Archive Update History Contact us KOME pSort search ... arch result Data detail Data name pSort search ... result Description of data contents Results of pro ... zation predictions Data file File name: kome_psort_search _result.zip File URL: ftp://ftp.biosciencedbc.jp/ar ...

  18. Temporal mode sorting using dual-stage quantum frequency conversion by asymmetric Bragg scattering

    DEFF Research Database (Denmark)

    Christensen, Jesper Bjerge; Reddy, Dileep V.; McKinstrie, C. J.;

    2015-01-01

    -mode interferometry [D. V. Reddy, Phys. Rev. A 91, 012323 (2015)], has been shown in the case of three-wave mixing to promise near-unity mode-sorting efficiency. Here we demonstrate that it is also possible to achieve high mode-sorting efficiency using four-wave mixing, if one pump pulse is long and the other short...

  19. Designing of a letter sorting machine for the regional post offices in Ghana

    Directory of Open Access Journals (Sweden)

    Erwin Normanyo

    2009-08-01

    Full Text Available The hitherto manual sorting of 1,200 letters per hour in the post offices is laborious, labour-intensive and time-consuming. This paper seeks to design a letter sorting machine (LSM based on the conveyor belt transportation and letter sorting principle to replace the manual method of sorting letters. This machine is designed to make sorting of letters very effective and efficient thus, minimizing sorting into wrong destination bins and increasing the number of well-sorted letters per hour to over 30,000. A programmable logic controller (PLC installed in-between the sensors and actuators effects programming flexibility by way of the control program in its memory. Optical character recognition (OCR technology and barcode sorter (BCS systems are employed to read handwritten and printed addresses as well as barcodes. Coding of the regions and a proposed addressing format is resolved thereby enhancing compatibility with the postal optical character reading system. This paper therefore seeks to design a letter sorting machine for the regional post offices in Ghana to increase effectiveness and efficiency of letter delivery.

  20. Optimal Time-Space Trade-Offs for Non-Comparison-Based Sorting

    DEFF Research Database (Denmark)

    Pagh, Rasmus; Pagter, Jacob Illeborg

    2002-01-01

    queues and sorting algorithms, this implies that we can deterministically sort time-space optimally in time Θ(T) for T ≥ n(lg lg n)2, and with high probability for T ≥ nlg lg n.Our results imply that recent space lower bounds for deciding element distinctness in o(nlgn) time are nearly tight....