WorldWideScience

Sample records for chromophore concentrations absorption

  1. Predicting dissolved lignin phenol concentrations in the coastal ocean from chromophoric dissolved organic matter (CDOM absorption coefficients

    Directory of Open Access Journals (Sweden)

    Cédric G. Fichot

    2016-02-01

    Full Text Available Dissolved lignin is a well-established biomarker of terrigenous dissolved organic matter (DOM in the ocean, and a chromophoric component of DOM. Although evidence suggests there is a strong linkage between lignin concentrations and chromophoric DOM (CDOM absorption coefficients in coastal waters, the characteristics of this linkage and the existence of a relationship that is applicable across coastal oceans remain unclear. Here, 421 paired measurements of dissolved lignin concentrations (sum of 9 lignin phenols and CDOM absorption coefficients (ag(λ were used to examine their relationship along the river-ocean continuum (0-37 salinity and across contrasting coastal oceans (sub-tropical, temperate, high-latitude. Overall, lignin concentrations spanned four orders of magnitude and revealed a strong, non-linear relationship with ag(λ. The characteristics of the relationship (shape, wavelength dependency, lignin-composition dependency and evidence from degradation indicators were all consistent with lignin being an important driver of CDOM variability in coastal oceans, and suggested physical mixing and long-term photodegradation were important in shaping the relationship. These observations were used to develop two simple empirical models for estimating lignin concentrations from ag(λ with a +/- 20% error relative to measured values. The models are expected to be applicable in most coastal oceans influenced by terrigenous inputs.

  2. Chromophore design for large two-photon absorption

    Science.gov (United States)

    Dudley, Christopher

    2014-11-01

    Conjugated oligothiophene chromophores are compared and studied for designing large linear and nonlinear absorption cross-sections. Optical properties of chromophores synthesized by the Naval Research Laboratory are modeled to construct a design factor of merit to predict and understand two-photon absorption (TPA) designs. Computer modeling to optimize parameters to produce photo active chromophores is conducted. Geometry, π-center (electron relay) and the electron donor or acceptor groups attached to the π-centers are considered for importance in TPA. This work could serve equally well as guide for quick back of the envelop research or industrial design verifications as well as an outline for introducing computation methods to students.

  3. Investigation of two-photon absorption induced excited state absorption in a fluorenyl-based chromophore.

    Science.gov (United States)

    Li, Changwei; Yang, Kun; Feng, Yan; Su, Xinyan; Yang, Junyi; Jin, Xiao; Shui, Min; Wang, Yuxiao; Zhang, Xueru; Song, Yinglin; Xu, Hongyao

    2009-12-01

    Two-photon absorption induced excited state absorption in the solution of a new fluorenyl-based chromophore is investigated by a time-resolved pump-probe technique using femtosecond pulses. With the help of an additional femtosecond open-aperture Z-scan technique, numerical simulations based on a three-energy level model are used to interpret the experimental results, and we determine the nonlinear optical parameters of this new chromophore uniquely. Large two-photon absorption cross section and excited state absorption cross section for singlet excited state are obtained, indicating a good candidate for optical limiting devices. Moreover, the influence of two-beam coupling induced energy transfer in neat N,N'-dimethylformamide solvent is also considered, although this effect is strongly restrained by the instantaneous two-photon absorption. PMID:19894682

  4. The photochemical determinants of color vision: revealing how opsins tune their chromophore's absorption wavelength.

    Science.gov (United States)

    Wang, Wenjing; Geiger, James H; Borhan, Babak

    2014-01-01

    The evolution of a variety of important chromophore-dependent biological processes, including microbial light sensing and mammalian color vision, relies on protein modifications that alter the spectral characteristics of a bound chromophore. Three different color opsins share the same chromophore, but have three distinct absorptions that together cover the entire visible spectrum, giving rise to trichromatic vision. The influence of opsins on the absorbance of the chromophore has been studied through methods such as model compounds, opsin mutagenesis, and computational modeling. The recent development of rhodopsin mimic that uses small soluble proteins to recapitulate the binding and wavelength tuning of the native opsins provides a new platform for studying protein-regulated spectral tuning. The ability to achieve far-red shifted absorption in the rhodopsin mimic system was attributed to a combination of the lack of a counteranion proximal to the iminium, and a uniformly neutral electrostatic environment surrounding the chromophore.

  5. Simultaneous control of emission localization and two-photon absorption efficiency in dissymmetrical chromophores

    Energy Technology Data Exchange (ETDEWEB)

    Tretiak, Sergei [Los Alamos National Laboratory

    2009-01-01

    The aim of the present work is to demonstrate that combined spectral tuning of fluorescence and two-photon absorption (TPA) properties of multipolar chromophores can be achieved by introduction of slight electronic chemical dissymmetry. In that perspective, two novel series of structurally related chromophores have been designed and studied: a first series based on rod-like quadrupolar chromophores bearing different electron-donating (D) end groups and a second series based on three-branched octupolar chromophores built from a trigonal donating moiety and bearing various acceptor (A) peripheral groups. The influence of the electronic dissymmetry is investigated by combined experimental and theoretical studies of the linear and nonlinear optical properties of dissymmetric chromophores compared to their symmetrical counterparts. In both types of systems (i.e. quadrupoles and octupoles) experiments and theory reveal that excitation is essentially delocalized and that excitation involves synchronized charge redistribution between the different D and A moieties within the multipolar structure (i.e. concerted intramolecular charge transfer). In contrast, the emission stems only from a particular dipolar subunit bearing the strongest D or A moieties due to fast excitation localization after excitation prior to emission. Hence control of emission characteristics (polarization and emission spectrum) in addition to localization can be achieved by controlled introduction of electronic dissymmetry (i.e. replacement of one of the D or A end-groups by a slightly stronger D{prime} or A{prime} units). Interestingly dissymmetrical functionalization of both quadrupolar and octupolar compounds does not lead to significant loss in TPA responses and can even be beneficial due to the spectral broadening and peak position tuning that it allows. This study thus reveals an original molecular engineering route strategy allowing major TPA enhancement in multipolar structures due to concerted

  6. Influence of Architecture, Concentration, and Thermal History on the Poling of Nonlinear Optical Chromophores in Block Copolymer Domains

    Energy Technology Data Exchange (ETDEWEB)

    Leolukman, Melvina; Paoprasert, Peerasak; Wang, Yao; Makhija, Varun; McGee, David J.; Gopalan, Padma (UW)

    2008-10-02

    Factors affecting the electric-field-induced poling of nonlinear optical chromophores in block copolymer domains were investigated by encapsulating the chromophores in a linear-diblock copolymer [poly(styrene-b-4-vinylpyridine)] and linear-dendritic (poly(methyl methacrylate)-dendron) block copolymer via hydrogen bonding. Temperature-dependent Fourier transform infrared spectroscopy and morphology evaluation by X-ray scattering and transmission electron microscopy were used with in situ second harmonic generation to correlate domain architectures, processing conditions such as thermal history, and chromophore concentrations with poling efficiency. Poling of chromophores encapsulated in the minority domain (spheres or cylinders) of a linear-diblock copolymer was inhibited by the increasing chromophore concentration within the domain and the chemical nature of the majority domain. Chromophore encapsulation in the majority domain produced the most favorable conditions for poling as measured by in situ second harmonic generation. Thermal annealing of the linear-diblock copolymer/chromophore composites resulted in chromophore aggregation with a corresponding decrease in nonlinear optical activity. The linear-dendron/chromophore system presented the most effective architecture for spatially dispersing chromophores. These findings suggest that while well-ordered phase-separated systems such as block copolymers enhance chromophore isolation over homopolymer systems, a more effective approach is to explore polymer chains end functionalized with chromophores.

  7. Seasonal dynamics of light absorption by chromophoric dissolved organic matter (CDOM) in the NW Mediterranean Sea (BOUSSOLE site)

    Science.gov (United States)

    Organelli, Emanuele; Bricaud, Annick; Antoine, David; Matsuoka, Atsushi

    2014-09-01

    We analyze a two-year time-series of chromophoric dissolved organic matter (CDOM) light absorption measurements in the upper 400 m of the water column at the BOUSSOLE site in the NW Mediterranean Sea. The seasonal dynamics of the CDOM light absorption coefficients at 440 nm (acdom(440)) is essentially characterized by (i) subsurface maxima forming in spring and progressively reinforcing throughout summer, (ii) impoverishment in the surface layer throughout summer and (iii) vertical homogeneity in winter. Seasonal variations of the spectral dependence of CDOM absorption, as described by the exponential slope value (Scdom), are characterized by highest values in summer and autumn at the surface and low values at the depths of acdom(440) subsurface maxima or just below them. Variations of acdom(440) are likely controlled by microbial digestion of phytoplankton cells, which leads to CDOM production, and by photochemical destruction (photobleaching), which leads to CDOM degradation. Photobleaching is also the main driver of Scdom variations. Consistently with previous observations, acdom(440) for a given chlorophyll a concentration is higher than expected from Case I waters bio-optical models. The total non-water light absorption budget shows that surface waters at the BOUSSOLE site are largely dominated by CDOM during all seasons but the algal bloom in March and April. These results improve the knowledge of CDOM absorption dynamics in the Mediterranean Sea, which is scarcely documented. In addition, they open the way to improved algorithms for the retrieval of CDOM absorption from field or satellite radiometric measurements.

  8. Theoretical Investigation on the One- and Two-photon Absorption Properties of Porphyrin-thiophene Chromophores

    Institute of Scientific and Technical Information of China (English)

    LI, Wenchao; FENG, Jikang; REN, Aimin; ZHANG, Xiangbiao; SUN, Chiachung

    2009-01-01

    Two series of porphydn-thiophene chromophores were theoretically studied that exhibit large two-photon ab- sorption cross-section in the visible region. The density functional theory (DFT) associated with ZINDO/SDCI methods has been used to calculate the molecular geometries, electronic structures, one-photon and two-photon ab- sorption properties. The results show that the number of thiophene units affects the properties of one-photon ab- sorption (OPA) and two-photon absorption (TPA). Porphyrin-thiophene chromophores featuring two or three thio- phene units have wide TPA response ranges; they can be applied to many nonlinear optical areas, such as optical limiting. Intervening ethynyl unit is beneficial to extend the conjugated pathway, and increase the two-photon ab- sorption cross-section. At the same time, the OPA and TPA wavelengths are bathochromically shifted. From view- point of the high transparency and large nonlinear optical response, porphyrin-thiophene chromophores will be promising TPA materials.

  9. Parameterization of the light absorption properties of chromophoric dissolved organic matter in the Baltic Sea and Pomeranian lakes

    Science.gov (United States)

    Meler, Justyna; Kowalczuk, Piotr; Ostrowska, Mirosława; Ficek, Dariusz; Zabłocka, Monika; Zdun, Agnieszka

    2016-08-01

    This study presents three alternative models for estimating the absorption properties of chromophoric dissolved organic matter aCDOM(λ). For this analysis we used a database containing 556 absorption spectra measured in 2006-2009 in different regions of the Baltic Sea (open and coastal waters, the Gulf of Gdańsk and the Pomeranian Bay), at river mouths, in the Szczecin Lagoon and also in three lakes in Pomerania (Poland) - Obłęskie, Łebsko and Chotkowskie. The variability range of the chromophoric dissolved organic matter (CDOM) absorption coefficient at 400 nm, aCDOM(400), lay within 0.15-8.85 m-1. The variability in aCDOM(λ) was parameterized with respect to the variability over 3 orders of magnitude in the chlorophyll a concentration Chl a (0.7-119 mg m-3). The chlorophyll a concentration and aCDOM(400) were correlated, and a statistically significant, nonlinear empirical relationship between these parameters was derived (R2 = 0.83). On the basis of the covariance between these parameters, we derived two empirical mathematical models that enabled us to design the CDOM absorption coefficient dynamics in natural waters and reconstruct the complete CDOM absorption spectrum in the UV and visible spectral domains. The input variable in the first model was the chlorophyll a concentration, and in the second one it was aCDOM(400). Both models were fitted to a power function, and a second-order polynomial function was used as the exponent. Regression coefficients for these formulas were determined for wavelengths from 240 to 700 nm at 5 nm intervals. Both approximations reflected the real shape of the absorption spectra with a low level of uncertainty. Comparison of these approximations with other models of light absorption by CDOM demonstrated that our parameterizations were superior (bias from -1.45 to 62 %, RSME from 22 to 220 %) for estimating CDOM absorption in the optically complex waters of the Baltic Sea and Pomeranian lakes.

  10. Absorption features of chromophoric dissolved organic matter (CDOM and tracing implication for dissolved organic carbon (DOC in Changjiang Estuary, China

    Directory of Open Access Journals (Sweden)

    X. Y. Zhang

    2013-07-01

    Full Text Available Chromophoric dissolved organic matter (CDOM represents the light absorbing fraction of dissolved organic carbon (DOC. Studies have shown that the optical properties of CDOM can be used to infer the distribution and diffusion characteristics of DOC in the estuary and coastal zone. The inversion of DOC concentrations from remote sensing has been implemented in certain regions. In this study we investigate the potential of tracing DOC from CDOM by the measurement of DOC, absorption spectrum of CDOM, Chla concentration, suspended sediment (SS, and salinity from cruises in different seasons around the Changjiang estuary. Our results show that around the Changjiang estuary the absorption coefficients of CDOM in general have the similar spatial and temporal characteristics as that of DOC, but the strength of the correlation between CDOM and DOC varies locally and seasonally. The input of pollutants from outside the estuary, the bloom of phytoplankton in spring, re-suspension of deposited sediment, and light bleaching all contribute to the local and seasonal variation of the correlation between DOC and CDOM. An inversion model for the determination of DOC from CDOM is established, but the stability of model parameters and its application in different environments need further study. We find that relative to the absorption coefficient of CDOM, the fitted parameters of the absorption spectrum of DOM are better indictors for the composition of DOC. In addition, it is found that the terrestrial input of DOC to Changjiang estuary is a typical two-stage dilution process instead of a linear diffusion process.

  11. The effect of chromophores concentration on the nonlinear optical activity of methacrylic copolymers with azochromophores in the side chain

    International Nuclear Information System (INIS)

    Quadratic nonlinear-optical characteristics of thin films based on methacrylic copolymers with of chromophore-containing monomers incorporated at various concentrations are measured by Second Harmonic Generation technique. Optimal chromophores content is obtained to be about 17 mol%, rather high values of nonlinear-optical coefficient, d33, up to 60 pm/V, are determined

  12. Absorption tuning of the green fluorescent protein chromophore: synthesis and studies of model compounds

    DEFF Research Database (Denmark)

    Brøndsted Nielsen, Mogens; Andersen, Lars Henrik; Rinza, Tomás Rocha

    2011-01-01

    The green fluorescent protein (GFP) chromophore is a heterocyclic compound containing a p-hydroxybenzylidine attached to an imidazol-5(4H)-one ring. This review covers the synthesis of a variety of model systems for elucidating the intrinsic optical properties of the chromophore in the gas phase...

  13. Effects of chromophore concentration and film thickness on thermo-optic properties of electro-optic fluorinated polyimide films

    Institute of Scientific and Technical Information of China (English)

    Hongxiang Song; Chengxun Wu

    2007-01-01

    Electro-optic (EO) effect and thermo-optic (TO) effect are jointly considered on the basis of field-induced and temperature-affected perturbations of the operating point in waveguide components. TO coefficients of EO fluorinated polyimide films with side-chain azobenzene chromophore were measured by attenuatedtotal-reflection (ATR) technique at different temperatures with TE- and TM-polarized lights, respectively.It is found that the absolute values of TO coefficients increase with the increments of both chromophore concentration and film thickness, but the polarization dependence of TO coefficients increases with the increment of chromophore concentration and decreases with the increment of film thickness.

  14. Probing ultrafast \\pi\\pi*/n\\pi* internal conversion in organic chromophores via K-edge resonant absorption

    CERN Document Server

    Wolf, T J A; Cryan, J P; Coriani, S; Squibb, R J; Battistoni, A; Berrah, N; Bostedt, C; Bucksbaum, P; Coslovich, G; Feifel, R; Gaffney, K J; Grilj, J; Martinez, T J; Miyabe, S; Moeller, S P; Mucke, M; Natan, A; Obaid, R; Osipov, T; Plekan, O; Wang, S; Koch, H; Gühr, M

    2016-01-01

    Organic chromophores with heteroatoms possess an important excited state relaxation channel from an optically allowed {\\pi}{\\pi}* to a dark n{\\pi}*state. We exploit the element and site specificity of soft x-ray absorption spectroscopy to selectively follow the electronic change during the {\\pi}{\\pi}*/n{\\pi}* internal conversion. As a hole forms in the n orbital during {\\pi}{\\pi}*/n{\\pi}* internal conversion, the near edge x-ray absorption fine structure (NEXAFS) spectrum at the heteroatom K-edge exhibits an additional resonance. We demonstrate the concept with the nucleobase thymine, a prototypical heteroatomic chromophore. With the help of time resolved NEXAFS spectroscopy at the oxygen K-edge, we unambiguously show that {\\pi}{\\pi}*/n{\\pi}* internal conversion takes place within (60 \\pm 30) fs. High-level coupled cluster calculations on the isolated molecules used in the experiment confirm the superb electronic structure sensitivity of this new method for excited state investigations.

  15. Linking CDOM spectral absorption to dissolved organic carbon concentrations and loadings in boreal estuaries

    DEFF Research Database (Denmark)

    Asmala, Eero; Stedmon, Colin A.; Thomas, David N.

    2012-01-01

    The quantity of chromophoric dissolved organic matter (CDOM) and dissolved organic carbon (DOC) in three Finnish estuaries (Karjaanjoki, Kyrönjoki and Kiiminkijoki) was investigated, with respect to predicting DOC concentrations and loadings from spectral CDOM absorption measurements. Altogether 87...

  16. Simultaneous recovery of chromophore concentrations and ultrasound velocity by spectrally resolved photoacoustic tomography

    Science.gov (United States)

    Yuan, Zhen; Zhang, Qizhi; Grobmyer, Stephen; Jiang, Huabei

    2009-02-01

    We describe a new spectral approach for inversion of photoacoustic data with multi-wavelength pulsed laser illumination. Multi-spectral PAT provides a means of recovery of different chromophore concentrations and ultrasound velocity simultaneously and directly by incorporating prior spectral information into the image reconstruction process. It is demonstrated from simulation tests and small animal experiments that the multi-parameter recovery based on multispectral PAT is reliable and accurate. The reconstructed multiple parameter images may provide us a key tool to quantify physiological function, disease progression, or response to intervention.

  17. Solvent dependence of two-photon absorption spectra of the enhanced green fluorescent protein (eGFP) chromophore

    Science.gov (United States)

    Hosoi, Haruko; Tayama, Ryo; Takeuchi, Satoshi; Tahara, Tahei

    2015-06-01

    Two-photon absorption spectra of 4‧-hydroxybenzylidene-2,3-dimethylimidazolinone, a model chromophore of enhanced green fluorescent protein (eGFP), were measured in various solvents. The two-photon absorption band of its anionic form is markedly blue-shifted from the corresponding one-photon absorption band in all solvents. Moreover, the magnitude of the blue shift varies largely depending on the solvent, which does not accord with the assignment of the two-photon absorption band to the transitions to the vibrationally excited S1 state. Our finding is readily rationalized by considering overlapping contributions of the S1 ← S0 and S2 ← S0 transitions, suggesting the involvement of the S2 state also in two-photon fluorescence of eGFP.

  18. Absorption features of chromophoric dissolved organic matter (CDOM) and tracing implication for dissolved organic carbon (DOC) in Changjiang Estuary, China

    OpenAIRE

    X. Y. Zhang; Chen, X.; Deng, H.; Du, Y; Jin, H. Y.

    2013-01-01

    Chromophoric dissolved organic matter (CDOM) represents the light absorbing fraction of dissolved organic carbon (DOC). Studies have shown that the optical properties of CDOM can be used to infer the distribution and diffusion characteristics of DOC in the estuary and coastal zone. The inversion of DOC concentrations from remote sensing has been implemented in certain regions. In this study we investigate the potential of tracing DOC from CDOM by the measure...

  19. Evolution of linear absorption and nonlinear optical properties in V-shaped ruthenium(II)-based chromophores.

    Science.gov (United States)

    Coe, Benjamin J; Foxon, Simon P; Harper, Elizabeth C; Helliwell, Madeleine; Raftery, James; Swanson, Catherine A; Brunschwig, Bruce S; Clays, Koen; Franz, Edith; Garín, Javier; Orduna, Jesús; Horton, Peter N; Hursthouse, Michael B

    2010-02-10

    In this article, we describe a series of complexes with electron-rich cis-{Ru(II)(NH(3))(4)}(2+) centers coordinated to two pyridyl ligands bearing N-methyl/arylpyridinium electron-acceptor groups. These V-shaped dipolar species are new, extended members of a class of chromophores first reported by us (Coe, B. J. et al. J. Am. Chem. Soc. 2005, 127, 4845-4859). They have been isolated as their PF(6)(-) salts and characterized by using various techniques including (1)H NMR and electronic absorption spectroscopies and cyclic voltammetry. Reversible Ru(III/II) waves show that the new complexes are potentially redox-switchable chromophores. Single crystal X-ray structures have been obtained for four complex salts; three of these crystallize noncentrosymmetrically, but with the individual molecular dipoles aligned largely antiparallel. Very large molecular first hyperpolarizabilities beta have been determined by using hyper-Rayleigh scattering (HRS) with an 800 nm laser and also via Stark (electroabsorption) spectroscopic studies on the intense, visible d --> pi* metal-to-ligand charge-transfer (MLCT) and pi --> pi* intraligand charge-transfer (ILCT) bands. The latter measurements afford total nonresonant beta(0) responses as high as ca. 600 x 10(-30) esu. These pseudo-C(2v) chromophores show two substantial components of the beta tensor, beta(zzz) and beta(zyy), although the relative significance of these varies with the physical method applied. According to HRS, beta(zzz) dominates in all cases, whereas the Stark analyses indicate that beta(zyy) is dominant in the shorter chromophores, but beta(zzz) and beta(zyy) are similar for the extended species. In contrast, finite field calculations predict that beta(zyy) is always the major component. Time-dependent density functional theory calculations predict increasing ILCT character for the nominally MLCT transitions and accompanying blue-shifts of the visible absorptions, as the ligand pi-systems are extended. Such unusual

  20. Monomeric C-phycocyanin at room temperature and 77 K. Resolution of the absorption and fluorescence spectra of the individual chromophores and the energy-transfer rate constants

    Energy Technology Data Exchange (ETDEWEB)

    Debreczeny, M.P.; Sauer, K. (Lawrence Berkeley Lab., CA (United States) Univ. of California, Berkeley, CA (United States)); Zhou, J.; Bryant, D.A. (Pennsylvania State Univ., University Park, PA (United States))

    1993-09-23

    At both room temperature (RT) and 77 K, the absorption and fluorescence spectra of the three individual chromophore types ([alpha][sub 84], [beta][sub 84], and [beta][sub 155]) found in monomeric C-phycocyanin ([alpha][sup PC][beta][sup PC]), isolated from the cyanobacterium Synechococcus sp. PCC 7002, were resolved along with the rates of energy transfer between the chromophores. The cpcB/C155S mutant, whose PC is missing the [beta][sub 155] chromophore, was useful in effecting this resolution. At RT, the single broad peak in the visible region of the absorption spectrum of ([alpha][sup PC][beta][sup PC]) was resolved into its three-component spectra by comparing the steady-state absorption spectra of the isolated wild-type [alpha] subunit of PC ([alpha][sup PC]) (containing only the [alpha][sub 84] chromophore) with those of the monomeric PCs isolated from the mutant strain ([alpha][sup PC][beta]*) and the wild-type strain ([alpha][sup PC][beta][sup PC]). At 77 K, the visible region of the absorption spectrum of ([alpha][sup PC][beta][sup PC]) splits into two peaks. This partial resolution at 77 K of the chromophore spectra of ([alpha][sup PC][beta][sup PC]) when compared with the 77 K absorption spectra of [alpha][sup PC], [beta][sup PC], and ([alpha][sup PC][beta]*) provided a confirmation of our RT assignments of the chromophore absorption spectra. 38 refs., 9 figs., 6 tabs.

  1. Study of influencing factors to chromophoric dissolved organic matter absorption properties from fluorescence features in Taihu lake in autumn

    Directory of Open Access Journals (Sweden)

    Chuang-Chun Huang

    2013-04-01

    Full Text Available In order to identify the components of chromophoric dissolved organic matter (CDOM, confirm the influence of components to the absorption coefficient of CDOM (aCDOM, and estimate aCDOM from fluorescence spectra, fluorescence and optical measurements of CDOM were carried out in November 2008. The results indicate that, the primary component of CDOM is humic-like. The secondary component is tryptophan-like, which is the product of phytoplankton and aquatic debris rather than the wastewater treatment drainaged from city. In this study, six fluorophores with multiple excitation-emission matrices (EEMs peaks (A, B, C, N, M, T were identified according to the parallel factor analysis (PARAFAC. The average contribution of each component to the CDOM is 19.93, 18.82, 16.88, 16.39, 12.26, and 15.72%, respectively. Red Shifted phenomenon will happen with the increase of fluorescence intensity for ultraviolet and terrestrially humic-like. Conversely, marine humic-like will appear Reverse Red Shifted with the increase of fluorescence intensity. The primary contributor to the shoulder value of CDOM’s absorption coefficient at 275 nm is phytoplankton productivity, followed by marine humic-like. The main contributors to the shoulder shape are UV humic-like and phytoplankton productivity, followed by marine humic-like and tryptophan-like. A strong correlation between CDOM absorption and fluorescence intensity at emission wavelength of 424 nm and excitation wavelength ranging from 280 to 360 nm was found. The absorption coefficient can be retrieved successfully from the same excitation wavelength’s fluorescence intensity by an exponential model.

  2. Absorption by DNA single strands of adenine isolated in vacuo: The role of multiple chromophores

    DEFF Research Database (Denmark)

    Nielsen, L.M.; Pedersen, S.O.; Kirketerp, M.-B.S.;

    2012-01-01

    to that for the adenine molecule and the dAMP mononucleotide. Desolvation has little effect on the bandwidth, which implies that inhomogenous broadening of the absorption bands in aqueous solution is of minor importance compared to, e.g., conformational disorder. Finally, at high photon energies, internal conversion...... competes with electron detachment since dissociation of the bare photoexcited ions on the microsecond time scale is measured....

  3. Molecular engineering of nanoscale quadrupolar chromophores for two-photon absorption

    Science.gov (United States)

    Porres, Laurent; Mongin, Olivier; Blanchard-Desce, Mireille H.; Ventelon, Lionel; Barzoukas, Marguerite; Moreaux, Laurent; Pons, Thomas; Mertz, Jerome

    2003-02-01

    Our aim has been the design of optimized NLO-phores with very high two-photon absorption (TPA) cross-sections (s2) in the red-NIR region, while maintaining high linear transparency and high fluorescence quantum yield. Our molecular engineering strategy is based on the push-push or pull-pull functionalization of semi-rigid nanoscale conjugated systems. The central building blocks were selected as rigid units that may assist quadrupolar intramolecular charge transfer by acting either as a (weak) donor or acceptor core. Quadrupolar molecules derived either from a phenyl unit, a rigidified biphenyl moiety or a fused bithiophene unit have been considered. Conjugated oligomers made of phenylene-vinylene and/or phenylene-ethynylene units were selected as connecting spacers between the core and the electroactive end groups to ensure effective electronic conjugation while maintaining suitable transparency/fluorescence. The TPA cross-sections were determined by investigating the two-photon-excited fluorescence properties using a Ti:sapphire laser delivering fs pulses. Both the nature of the end groups and of the core moiety play an important role in determining the TPA spectra. In addition, by adjusting the length and nature of the conjugated extensor, both amplification and spectral tuning of TPA cross-sections can be achieved. As a result, push-push fluorophores which demonstrate giant TPA cross-sections (up to 3000 GM) in the visible red, high fluorescence quantum yields and good transparency in the visible range have been obtained.

  4. Photophysics and non-linear absorption of Au(I) and Pt(II) acetylide complexes of a thienyl-carbazole chromophore.

    Science.gov (United States)

    Goswami, Subhadip; Wicks, Geoffrey; Rebane, Aleksander; Schanze, Kirk S

    2014-12-21

    In order to understand the photophysics and non-linear optical properties of carbazole containing π-conjugated oligomers of the type ET-Cbz-TE (E = ethynylene, T = 2,5-thienylene, Cbz = 3,6-carbazole), a detailed investigation was carried out on a series of oligomers that feature Au(i) or Pt(ii) acetylide "end groups", as well as a Pt(ii)-acetylide linked polymer (CBZ-Au-1 and CBZ-Pt-1, CBZ-Poly-Pt). These organometallic chromophores were characterized by UV-visible absorption and variable temperature photoluminescence spectroscopy, nanosecond transient absorption spectroscopy, open aperture nanosecond z-scan and two photon absorption (2PA) spectroscopy. The Au(i) and Pt(ii) oligomers and polymer exhibit weak fluorescence in fluid solution at room temperature. Efficient phosphorescence is observed from the Pt(ii) systems below 150 K in a solvent glass; however, the Au(i) oligomer exhibits only weak phosphorescence at 77 K. Taken together, the emission results indicate that the intersystem crossing efficiency for the Pt(ii) chromophores is greater than for the Au(i) oligomer. Nonetheless, nanosecond transient absorption indicates that direct excitation affords moderately long-lived triplet states for all of the chromophores. Open aperture z-scan measurement shows effective optical attenuation can be achieved by using these materials. The 2PA cross section in the degenerate S0→S1 transition region was in the range 10-100 GM, and increased monotonically toward shorter wavelengths, reaching 800-1000 GM at 550 nm.

  5. Quantitative spatially resolved measurement of tissue chromophore concentrations using photoacoustic spectroscopy: application to the measurement of blood oxygenation and haemoglobin concentration

    Energy Technology Data Exchange (ETDEWEB)

    Laufer, Jan; Delpy, Dave; Elwell, Clare; Beard, Paul [Department of Medical Physics and Bioengineering, University College London, Malet Place Engineering Building, London WC1E 6BT (United Kingdom)

    2007-01-07

    A new approach based on pulsed photoacoustic spectroscopy for non-invasively quantifying tissue chromophore concentrations with high spatial resolution has been developed. The technique is applicable to the quantification of tissue chromophores such as oxyhaemoglobin (HbO{sub 2}) and deoxyhaemoglobin (HHb) for the measurement of physiological parameters such as blood oxygen saturation (SO{sub 2}) and total haemoglobin concentration. It can also be used to quantify the local accumulation of targeted contrast agents used in photoacoustic molecular imaging. The technique employs a model-based inversion scheme to recover the chromophore concentrations from photoacoustic measurements. This comprises a numerical forward model of the detected time-dependent photoacoustic signal that incorporates a multiwavelength diffusion-based finite element light propagation model to describe the light transport and a time-domain acoustic model to describe the generation, propagation and detection of the photoacoustic wave. The forward model is then inverted by iteratively fitting it to measurements of photoacoustic signals acquired at different wavelengths to recover the chromophore concentrations. To validate this approach, photoacoustic signals were generated in a tissue phantom using nanosecond laser pulses between 740 nm and 1040 nm. The tissue phantom comprised a suspension of intralipid, blood and a near-infrared dye in which three tubes were immersed. Blood at physiological haemoglobin concentrations and oxygen saturation levels ranging from 2% to 100% was circulated through the tubes. The signal amplitude from different temporal sections of the detected photoacoustic waveforms was plotted as a function of wavelength and the forward model fitted to these data to recover the concentrations of HbO{sub 2} and HHb, total haemoglobin concentration and SO{sub 2}. The performance was found to compare favourably to that of a laboratory CO-oximeter with measurement resolutions of {+-}3

  6. Excited-state characterization and effective three-photon absorption model of two-photon-induced excited-state absorption in organic push-pull charge-transfer chromophores

    International Nuclear Information System (INIS)

    We report experimental investigations of two-photon and excited-state absorption in D-π-A chromophores and propose a model to explain nonlinear absorption in the nanosecond regime. The key parameter is an effective three-photon absorption coefficient that depends on the two-photon absorption cross section and excited-state photophysical properties. We obtain all these parameters from independent measurements and then compare the model with nanosecond nonlinear transmission measurements. We find good agreement with the data, using no free parameters, for specific values of some published two-photon absorption cross sections. We conclude that excited singlet-singlet and triplet-triplet absorption are the dominant sources of nonlinear transmittance loss and that the chief role of two-photon absorption is to populate these states

  7. Towards a wearable near infrared spectroscopic probe for monitoring concentrations of multiple chromophores in biological tissue in vivo

    Science.gov (United States)

    Chitnis, Danial; Airantzis, Dimitrios; Highton, David; Williams, Rhys; Phan, Phong; Giagka, Vasiliki; Powell, Samuel; Cooper, Robert J.; Tachtsidis, Ilias; Smith, Martin; Elwell, Clare E.; Hebden, Jeremy C.; Everdell, Nicholas

    2016-06-01

    The first wearable multi-wavelength technology for functional near-infrared spectroscopy has been developed, based on a custom-built 8-wavelength light emitting diode (LED) source. A lightweight fibreless probe is designed to monitor changes in the concentrations of multiple absorbers (chromophores) in biological tissue, the most dominant of which at near-infrared wavelengths are oxyhemoglobin and deoxyhemoglobin. The use of multiple wavelengths enables signals due to the less dominant chromophores to be more easily distinguished from those due to hemoglobin and thus provides more complete and accurate information about tissue oxygenation, hemodynamics, and metabolism. The spectroscopic probe employs four photodiode detectors coupled to a four-channel charge-to-digital converter which includes a charge integration amplifier and an analogue-to-digital converter (ADC). Use of two parallel charge integrators per detector enables one to accumulate charge while the other is being read out by the ADC, thus facilitating continuous operation without dead time. The detector system has a dynamic range of about 80 dB. The customized source consists of eight LED dies attached to a 2 mm × 2 mm substrate and encapsulated in UV-cured epoxy resin. Switching between dies is performed every 20 ms, synchronized to the detector integration period to within 100 ns. The spectroscopic probe has been designed to be fully compatible with simultaneous electroencephalography measurements. Results are presented from measurements on a phantom and a functional brain activation study on an adult volunteer, and the performance of the spectroscopic probe is shown to be very similar to that of a benchtop broadband spectroscopy system. The multi-wavelength capabilities and portability of this spectroscopic probe will create significant opportunities for in vivo studies in a range of clinical and life science applications.

  8. Absorption and fluorescence properties of chromophoric dissolved organic matter of the eastern Bering Sea in the summer with special reference to the influence of a cold pool

    Science.gov (United States)

    D'Sa, E. J.; Goes, J. I.; Gomes, H.; Mouw, C.

    2014-06-01

    The absorption and fluorescence properties of chromophoric dissolved organic matter (CDOM) are reported for the inner shelf, slope waters and outer shelf regions of the eastern Bering Sea during the summer of 2008, when a warm, thermally stratified surface mixed layer lay over a cold pool (factor analysis (PARAFAC) revealed large variability in the characteristics of CDOM in different regions of the Bering Sea. PARAFAC analysis aided in the identification of three humic-like (components one, two and five) and two protein-like (a tyrosine-like component three, and a tryptophan-like component four) components. In the extensive shelf region, average absorption coefficients at 355 nm (ag355, m-1) and DOC concentrations (μM) were highest in the inner shelf (0.342 ± 0.11 m-1, 92.67 ± 14.60 μM) and lower in the middle (0.226 ± 0.05 m-1, 78.38 ± 10.64 μM) and outer (0.185 ± 0.05 m-1, 79.24 ± 18.01 μM) shelves, respectively. DOC concentrations, however were not significantly different, suggesting CDOM sources and sinks to be uncoupled from DOC. Mean spectral slopes S were elevated in the middle shelf (24.38 ± 2.25 μm-1) especially in the surface waters (26.87 ± 2.39 μm-1) indicating high rates of photodegradation in the highly stratified surface mixed layer, which intensified northwards in the northern middle shelf likely contributing to greater light penetration and to phytoplankton blooms at deeper depths. The fluorescent humic-like components one, two, and five were most elevated in the inner shelf most likely from riverine inputs. Along the productive "green belt" in the outer shelf/slope region, absorption and fluorescence properties indicated the presence of fresh and degraded autochthonous DOM. Near the Unimak Pass region of the Aleutian Islands, low DOC and ag355 (mean 66.99 ± 7.94 μM; 0.182 ± 0.05 m-1) and a high S (mean 25.95 ± 1.58 μm-1) suggested substantial photobleaching of the Alaska Coastal Water, but high intensities of humic-like and

  9. Self absorption in luminescent solar concentrators

    NARCIS (Netherlands)

    Krumer, Z.

    2014-01-01

    Luminescent solar concentrators are photovoltaic devices made of thin transparent material, in which luminescent particles are dispersed. The incident light enters the device through its large facets and is subsequently absorbed by the luminescent particles, which re-emit it whilst changing its dire

  10. Quantifying self-absorption losses in luminescent solar concentrators

    NARCIS (Netherlands)

    Ten Kate, O.M.; Hooning, K.M.; Van der Kolk, E.

    2014-01-01

    Analytical equations quantifying self-absorption losses in circular luminescent solar concentrators (LSCs) are presented that can easily be solved numerically by commercial math software packages. With the quantum efficiency, the absorption and emission spectra of a luminescent material, the LSC dim

  11. Analysis of the Contribution of Chromophores in Side Groups of Amino Acids to the Absorption Spectrum of Hemoglobin

    Science.gov (United States)

    Lavrinenko, I. A.; Vashanov, G. A.; Ruban, M. K.

    2014-01-01

    Based on spectral analysis of solutions of aromatic, heterocyclic, and sulfur-containing amino acids, we propose an additive model and assess the roles of the studied types of amino acid residues in formation of the overall absorption spectrum of hemoglobin. We have established that the identified absorption maxima (transitions) at 243.4, 248.4, 253.2, 258.8, 261.6, 264.8, and 268.4 nm belong to phenylalanine amino acid residues. Probably the latter also form the unassigned transition at 241.0 nm. The transitions at 272.8, 274.6, 280.0, and 284.4 nm are a superposition of the absorption by the side groups of tyrosine and tryptophan; the transition at 278.2 nm is associated with tyrosine, masked by adjacent transitions of tryptophan, and the transition at 291.2 nm belongs to tryptophan. We consider the possibility of estimating the changes in the spectral properties of proteins under the influence of various physical and chemical factors using data from additive spectra.

  12. Evaluation of light scattering properties and chromophore concentrations in skin tissue based on diffuse reflectance signals at isosbestic wavelengths of hemoglobin

    Science.gov (United States)

    Yokokawa, Takumi; Nishidate, Izumi

    2016-04-01

    We investigate a method to evaluate light-scattering properties and chromophore concentrations in human skin tissue through diffuse reflectance spectroscopy using the reflectance signals acquired at isosbestic wavelengths of hemoglobin (420, 450, 500, and 585 nm). In the proposed method, Monte Carlo simulation-based empirical formulas are used to specify the scattering parameters of skin tissue, such as the scattering amplitude a and the scattering power b, as well as the concentration of melanin C m and the total blood concentration C tb. The use of isosbestic wavelengths of hemoglobin enables the values of C m, C tb, a, and b to be estimated independently of the oxygenation of hemoglobin. The spectrum of the reduced scattering coefficient is reconstructed from the scattering parameters. Experiments using in vivo human skin tissues were performed to confirm the feasibility of the proposed method for evaluating the changes in scattering properties and chromophore concentrations in skin tissue. The experimental results revealed that light scattering is significantly reduced by the application of a glycerol solution, which indicates an optical clearing effect due to osmotic dehydration and the matching of the refractive indices of scatterers in the epidermis.

  13. Benzothiazoles with tunable electron-withdrawing strength and reverse polarity: a route to triphenylamine-based chromophores with enhanced two-photon absorption.

    Science.gov (United States)

    Hrobárik, Peter; Hrobáriková, Veronika; Sigmundová, Ivica; Zahradník, Pavol; Fakis, Mihalis; Polyzos, Ioannis; Persephonis, Peter

    2011-11-01

    A series of dipolar and octupolar triphenylamine-derived dyes containing a benzothiazole positioned in the matched or mismatched fashion have been designed and synthesized via palladium-catalyzed Sonogashira cross-coupling reactions. Linear and nonlinear optical properties of the designed molecules were tuned by an additional electron-withdrawing group (EWG) and by changing the relative positions of the donor and acceptor substituents on the heterocyclic ring. This allowed us to examine the effect of positional isomerism and extend the structure-property relationships useful in the engineering of novel heteroaromatic-based systems with enhanced two-photon absorption (TPA). The TPA cross-sections (δ(TPA)) in the target compounds dramatically increased with the branching of the triphenylamine core and with the strength of the auxiliary acceptor. In addition, a change from the commonly used polarity in push-pull benzothiazoles to a reverse one has been revealed as a particularly useful strategy (regioisomeric control) for enhancing TPA cross-sections and shifting the absorption and emission maxima to longer wavelengths. The maximum TPA cross-sections of the star-shaped three-branched triphenylamines are ∼500-2300 GM in the near-infrared region (740-810 nm); thereby the molecular weight normalized δ(TPA)/MW values of the best performing dyes within the series (2.0-2.4 GM·g(-1)·mol) are comparable to those of the most efficient TPA chromophores reported to date. The large TPA cross-sections combined with high emission quantum yields and large Stokes shifts make these compounds excellent candidates for various TPA applications, including two-photon fluorescence microscopy.

  14. Limitations and design considerations for donor-acceptor systems in luminescent solar concentrators: the effect of coupling-induced red-edge absorption

    Science.gov (United States)

    MacQueen, Rowan W.; Tayebjee, Murad J. Y.; Webb, James E. A.; Falber, Alexander; Thordarson, Pall; Schmidt, Timothy W.

    2016-06-01

    Luminescent solar concentrators (LSCs) use luminescence and waveguiding to concentrate photons within thin dielectric slabs for use in photovoltaic, lighting, and photobioreactor applications. Donor-acceptor systems of organic chromophores are widely used in LSCs to broaden the sunlight absorption range and attempt to reduce loss-inducing reabsorption by the emitting chromophore. We use raytrace simulations across a large parameter space to model the performance of LSCs containing two novel donor-acceptor trimers based on the perylene moiety. We find that under certain conditions, trimers outperform single-dye LSCs as expected. However, at higher concentrations, a slight increase in red-edge absorption by the trimers increases reabsorption and has a deleterious effect on LSC performance. This underscores the large effect that even small changes in the red edge can have, and may discourage the use of donor-acceptor schemes with high interchromophore coupling that promotes red-edge absorption. Finally, we show that for a LSC-PV pair, selecting a PV cell that is well-matched with the LSC emission spectrum has a large effect on the flux gain of the system, and that the systems studied here are well-matched to emerging PV technologies.

  15. Determination of molybdenum in flotation concentrates by atomic absorption spectrophotometry

    International Nuclear Information System (INIS)

    Molybdenum was determined by atomic absorption spectrophotometry in 0.05 N ammoniacal solution after the decomposition of the concentrate with aqua regia. Negros ore from Philippines was used as a flotation feed, which contained chalcopyrites and calcium-magnesium minerals. Among the metals tested copper, iron and the alkaline earths interfered. Less than 50 ppm of copper yielded lower results for molybdenum. Higher results came out with more than 50 ppm of copper. In the presence of iron and citric acid (0.4 g/100 ml) which is a suppressor for hydroxide formation, a lower estimation resulted for molybdenum. Calcium interfered, lower results by 2 and >10% being obtained with respective 2.5 and 20 ppm of calcium. More than 20 ppm of magnesium behaved similarly. Sodium sulfate (0.5 g/100 ml) served as the suppressor for copper, iron and citric acid; 100 ppm each of copper and iron did not interfere in this way. Interferences due to calcium and magnesium (less than 60 ppm) was able to be masked by the addition of sodium silicate (200 ppm as silica). The analysis of flotation products and synthetic samples consisting of molybdenite, chalcopyrite, calcium chloride and magnesium sulfate revealed that the atomic absorption method can be applied to the analysis of the concentrates for molybdenum with an error of about 2%. (auth.)

  16. Non-linear absorption for concentrated solar energy transport

    Energy Technology Data Exchange (ETDEWEB)

    Jaramillo, O. A; Del Rio, J.A; Huelsz, G [Centro de Investigacion de Energia, UNAM, Temixco, Morelos (Mexico)

    2000-07-01

    In order to determine the maximum solar energy that can be transported using SiO{sub 2} optical fibers, analysis of non-linear absorption is required. In this work, we model the interaction between solar radiation and the SiO{sub 2} optical fiber core to determine the dependence of the absorption of the radioactive intensity. Using Maxwell's equations we obtain the relation between the refractive index and the electric susceptibility up to second order in terms of the electric field intensity. This is not enough to obtain an explicit expression for the non-linear absorption. Thus, to obtain the non-linear optical response, we develop a microscopic model of an harmonic driven oscillators with damp ing, based on the Drude-Lorentz theory. We solve this model using experimental information for the SiO{sub 2} optical fiber, and we determine the frequency-dependence of the non-linear absorption and the non-linear extinction of SiO{sub 2} optical fibers. Our results estimate that the average value over the solar spectrum for the non-linear extinction coefficient for SiO{sub 2} is k{sub 2}=10{sup -}29m{sup 2}V{sup -}2. With this result we conclude that the non-linear part of the absorption coefficient of SiO{sub 2} optical fibers during the transport of concentrated solar energy achieved by a circular concentrator is negligible, and therefore the use of optical fibers for solar applications is an actual option. [Spanish] Con el objeto de determinar la maxima energia solar que puede transportarse usando fibras opticas de SiO{sub 2} se requiere el analisis de absorcion no linear. En este trabajo modelamos la interaccion entre la radiacion solar y el nucleo de la fibra optica de SiO{sub 2} para determinar la dependencia de la absorcion de la intensidad radioactiva. Mediante el uso de las ecuaciones de Maxwell obtenemos la relacion entre el indice de refraccion y la susceptibilidad electrica hasta el segundo orden en terminos de intensidad del campo electrico. Esto no es

  17. Absorption of Low Concentration Sulfur Dioxide Using Liquid-containing Microporous Membrane

    Institute of Scientific and Technical Information of China (English)

    薛娟琴; 兰新哲; 孟令嫒; 李伟达

    2007-01-01

    The absorption of low concentration SO2 in flue gas by using the module of liquid-containing microporous membrane which iS made up of hollow fiber and citric acid-sodium citrate buffer solution was investigated.The absorption efficiency of hydrophilic and hydrophobic membranes by using the concept of dynamic contact angle was mainly studied.The infuences on absorption efficiency from absorption time,flowrate of gas phase,SO2 concentration of gas phase,air pressure,citrate concentration,pH value of solution as well as the generation of sulfate radical in absorption solution were examined.The results indicate that the hydrophobic hollow fiber membrane is better than hydrophilic membrane,the absorption efficiency decreases with increasing absorption time,gas phase flowrate,gas phase SO2 concentration and air pressure,the absorption rate and capacity of SO2 can be improved by increasing the citrate concentration,the absorption efficiency can be improved by increasing the pH value of citrate solution,the concentration of SO4z- in absorption solution increases linearly with the absorption time at a rate around 0.192g/(L·h).

  18. Effect of chromophore-chromophore electrostatic interactions in the NLO response of functionalized organic-inorganic sol-gel materials

    Science.gov (United States)

    Reyes-Esqueda, J.; Darracq, B.; García-Macedo, J.; Canva, M.; Blanchard-Desce, M.; Chaput, F.; Lahlil, K.; Boilot, J. P.; Brun, A.; Lévy, Y.

    2001-10-01

    In the last years, important non-linear optical (NLO) results on sol-gel and polymeric materials have been reported, with values comparable to those found in crystals. These new materials contain push-pull chromophores either incorporated as guest in a high Tg polymeric matrix (doped polymers) or grafted onto the polymeric matrix. These systems present several advantages, however they require significant improvement at the molecular level—by designing optimized chromophores with very large molecular figure of merit, specific to each application targeted. Besides, it was recently stated in polymers that the chromophore-chromophore electrostatic interactions, which are dependent of chromophore concentration, have a strong effect into their NLO properties. This has not been explored at all in sol-gel systems. In this work, the sol-gel route was used to prepare hybrid organic-inorganic thin films with different NLO chromophores grafted into the skeleton matrix. Combining a molecular engineering strategy for getting a larger molecular figure of merit and by controlling the intermolecular dipole-dipole interactions through both: the tuning of the push-pull chromophore concentration and the control of tetraethoxysilane concentration, we have obtained a r33 coefficient around 15 pm/V at 633 nm for the classical DR1 azo-chromophore and a r33 around 50 pm/V at 831 nm for a new optimized chromophore structure.

  19. Biliprotein maturation: the chromophore attachment.

    Science.gov (United States)

    Scheer, H; Zhao, K-H

    2008-04-01

    Biliproteins are a widespread group of brilliantly coloured photoreceptors characterized by linear tetrapyrrolic chromophores, bilins, which are covalently bound to the apoproteins via relatively stable thioether bonds. Covalent binding stabilizes the chromoproteins and is mandatory for phycobilisome assembly; and, it is also important in biliprotein applications such as fluorescence labelling. Covalent binding has, on the other hand, also considerably hindered biliprotein research because autocatalytic chromophore additions are rare, and information on enzymatic addition by lyases was limited to a single example, an EF-type lyase attaching phycocyanobilin to cysteine-alpha84 of C-phycocyanin. The discovery of new activities for the latter lyases, and of new types of lyases, have reinvigorated research activities in the subject. So far, work has mainly concentrated on cyanobacterial phycobiliproteins. Methodological advances in the process, however, as well as the finding of often large numbers of homologues, opens new possibilities for research on the subsequent assembly/disassembly of the phycobilisome in cyanobacteria and red algae, on the assembly and organization of the cryptophyte light-harvesting system, on applications in basic research such as protein folding, and on the use of phycobiliproteins for labelling.

  20. [Research on the NO2 mean concentration measurement with target differential optical absorption spectroscopy technology].

    Science.gov (United States)

    Liu, Jin; Si, Fu-Qi; Zhou, Hai-Jin; Zhao, Min-Jie; Dou, Ke; Liu, Wen-Qing

    2013-04-01

    A new monitoring method of NO2 concentration near ground with the target difference absorption spectrum technology (Target DOAS) is introduced in the present paper. This method is based on the passive difference absorption spectrum technology. The instrument collects solar reflection spectrum of remote objectives, such as wall of building and mountain, and a specific reference spectrum is chosen to subtract the influence of trace gases from the target to atmospheric top, then integrated concentration of NO2 along the path between the target and instrument can be calculated through the differential absorption spectra inversion algorithm. Since the distance between the instrument and target is given, the mean concentration of NO2 can be derived. With developed Target DOAS instrument, NO2 concentration measurement was carried out in Hefei. And comparison was made between the target DOAS and long path difference absorption spectrometer. Good consistency was presented, proving the feasibility of this method. PMID:23841393

  1. Relating Chromophoric and Structural Disorder in Conjugated Polymers

    CERN Document Server

    Simine, Lena

    2016-01-01

    The optoelectronic properties of amorphous conjugated polymers are sensitive to conformational disorder and spectroscopy provides the means for structural characterization of the fragments of the chain which interact with light - "chromophores". A faithful interpretation of spectroscopic conformational signatures, however, presents a key challenge. We investigate the relationship between the ground state optical gaps, the properties of the excited states, and the structural features of chromophores of a single molecule poly(3-hexyl)-thiophene (P3HT), using quantum-classical atomistic simulations. Our results demonstrate that chromophoric disorder reflects an interplay between excited state de-localization and electron-hole polarization, and is controlled by torsional disorder that is specifically associated with the presence of side chains. Within this conceptual framework, we predict and explain a counter-intuitive spectral signature of P3HT: a red-shifted absorption, despite shortening of chromophores, with...

  2. Unraveling the chromophoric disorder of poly(3-hexylthiophene)

    CERN Document Server

    Thiessen, Alexander; Adachi, Takuji; Steiner, Florian; Bout, David Vanden; Lupton, John M

    2015-01-01

    The spectral breadth of conjugated polymers gives these materials a clear advantage over other molecular compounds for organic photovoltaic applications and is a key factor in recent efficiencies topping 10%. But why do excitonic transitions, which are inherently narrow, lead to absorption over such a broad range of wavelengths in the first place? Using single-molecule spectroscopy, we address this fundamental question in a model material, poly(3-hexylthiophene). Narrow zero-phonon lines from single chromophores are found to scatter over 200nm, an unprecedented inhomogeneous broadening which maps the ensemble. The giant red-shift between solution and bulk films arises from energy transfer to the lowest-energy chromophores in collapsed polymer chains which adopt a highly-ordered morphology. We propose that the extreme energetic disorder of chromophores is structural in origin. This structural disorder on the single-chromophore level may actually enable the high degree of polymer chain ordering found in bulk fi...

  3. An Inverse Modeling Approach to Estimating Phytoplankton Pigment Concentrations from Phytoplankton Absorption Spectra

    Science.gov (United States)

    Moisan, John R.; Moisan, Tiffany A. H.; Linkswiler, Matthew A.

    2011-01-01

    Phytoplankton absorption spectra and High-Performance Liquid Chromatography (HPLC) pigment observations from the Eastern U.S. and global observations from NASA's SeaBASS archive are used in a linear inverse calculation to extract pigment-specific absorption spectra. Using these pigment-specific absorption spectra to reconstruct the phytoplankton absorption spectra results in high correlations at all visible wavelengths (r(sup 2) from 0.83 to 0.98), and linear regressions (slopes ranging from 0.8 to 1.1). Higher correlations (r(sup 2) from 0.75 to 1.00) are obtained in the visible portion of the spectra when the total phytoplankton absorption spectra are unpackaged by multiplying the entire spectra by a factor that sets the total absorption at 675 nm to that expected from absorption spectra reconstruction using measured pigment concentrations and laboratory-derived pigment-specific absorption spectra. The derived pigment-specific absorption spectra were further used with the total phytoplankton absorption spectra in a second linear inverse calculation to estimate the various phytoplankton HPLC pigments. A comparison between the estimated and measured pigment concentrations for the 18 pigment fields showed good correlations (r(sup 2) greater than 0.5) for 7 pigments and very good correlations (r(sup 2) greater than 0.7) for chlorophyll a and fucoxanthin. Higher correlations result when the analysis is carried out at more local geographic scales. The ability to estimate phytoplankton pigments using pigment-specific absorption spectra is critical for using hyperspectral inverse models to retrieve phytoplankton pigment concentrations and other Inherent Optical Properties (IOPs) from passive remote sensing observations.

  4. X-Shaped electro-optic chromophore with remarkably blue-shifted optical absorption. Synthesis, characterization, linear/nonlinear optical properties, self-assembly, and thin film microstructural characteristics.

    Science.gov (United States)

    Kang, Hu; Evmenenko, Guennadi; Dutta, Pulak; Clays, Koen; Song, Kai; Marks, Tobin J

    2006-05-10

    A novel type of "X-shaped" two-dimensional electro-optic (EO) chromophore with extended conjugation has been synthesized and characterized. This chromophore is found to exhibit a remarkably blue-shifted optical maximum (357 nm in CH(2)Cl(2)) while maintaining a very large first hyperpolarizability (beta). Hyper-Rayleigh Scattering (HRS) measurements at 800 nm provide a beta(zzz) value of 1840 x 10(-30) esu. Self-assembled thin films of this chromophore were fabricated via a layer-by-layer chemisorptive siloxane-based approach. The chromophoric multilayers have been characterized by transmission optical spectroscopy, advancing contact angle measurements, synchrotron X-ray reflectivity, atomic force microscopy, and angle-dependent polarized second harmonic generation spectroscopy. The self-assembled chromophoric films exhibit a dramatically blue-shifted optical maximum (325 nm) while maintaining a large EO response (chi(2)(333) approximately 232 pm/V at 1064 nm; r(33) approximately 45 pm/V at 1310 nm). This work demonstrates an attractive approach to developing EO materials offering improved nonlinearity-transparency trade-offs. PMID:16669690

  5. Molecular characterization of brown carbon (BrC) chromophores in secondary organic aerosol generated from photo-oxidation of toluene.

    Science.gov (United States)

    Lin, Peng; Liu, Jiumeng; Shilling, John E; Kathmann, Shawn M; Laskin, Julia; Laskin, Alexander

    2015-09-28

    Atmospheric brown carbon (BrC) is a significant contributor to light absorption and climate forcing. However, little is known about a fundamental relationship between the chemical composition of BrC and its optical properties. In this work, light-absorbing secondary organic aerosol (SOA) was generated in the PNNL chamber from toluene photo-oxidation in the presence of NOx (Tol-SOA). Molecular structures of BrC components were examined using nanospray desorption electrospray ionization (nano-DESI) and liquid chromatography (LC) combined with UV/Vis spectroscopy and electrospray ionization (ESI) high-resolution mass spectrometry (HRMS). The chemical composition of BrC chromophores and the light absorption properties of toluene SOA (Tol-SOA) depend strongly on the initial NOx concentration. Specifically, Tol-SOA generated under high-NOx conditions (defined here as initial NOx/toluene of 5/1) appears yellow and mass absorption coefficient of the bulk sample (MACbulk@365 nm = 0.78 m(2) g(-1)) is nearly 80 fold higher than that measured for the Tol-SOA sample generated under low-NOx conditions (NOx/toluene NOx. The integrated absorbance of these fifteen chromophores accounts for 40-60% of the total light absorbance by Tol-SOA at wavelengths between 300 nm and 500 nm. The combination of tandem LC-UV/Vis-ESI/HRMS measurements provides an analytical platform for predictive understanding of light absorption properties by BrC and their relationship to the structure of individual chromophores. General trends in the UV/Vis absorption by plausible isomers of the BrC chromophores were evaluated using theoretical chemistry calculations. The molecular-level understanding of BrC chemistry is helpful for better understanding the evolution and behavior of light absorbing aerosols in the atmosphere. PMID:26173064

  6. Self-Assembled Light-Harvesting System from Chromophores in Lipid Vesicles.

    Science.gov (United States)

    Sahin, Tuba; Harris, Michelle A; Vairaprakash, Pothiappan; Niedzwiedzki, Dariusz M; Subramanian, Vijaya; Shreve, Andrew P; Bocian, David F; Holten, Dewey; Lindsey, Jonathan S

    2015-08-13

    Lipid vesicles are used as the organizational structure of self-assembled light-harvesting systems. Following analysis of 17 chromophores, six were selected for inclusion in vesicle-based antennas. The complementary absorption features of the chromophores span the near-ultraviolet, visible, and near-infrared region. Although the overall concentration of the pigments is low (~1 μM for quantitative spectroscopic studies) in a cuvette, the lipid-vesicle system affords high concentration (≥10 mM) in the bilayer for efficient energy flow from donor to acceptor. Energy transfer was characterized in 13 representative binary mixtures using static techniques (fluorescence-excitation versus absorptance spectra, quenching of donor fluorescence, modeling emission spectra of a mixture versus components) and time-resolved spectroscopy (fluorescence, ultrafast absorption). Binary donor-acceptor systems that employ a boron-dipyrrin donor (S0 ↔ S1 absorption/emission in the blue-green) and a chlorin or bacteriochlorin acceptor (S0 ↔ S1 absorption/emission in the red or near-infrared) have an average excitation-energy-transfer efficiency (ΦEET) of ~50%. Binary systems with a chlorin donor and a chlorin or bacteriochlorin acceptor have ΦEET ∼ 85%. The differences in ΦEET generally track the donor-fluorescence/acceptor-absorption spectral overlap within a dipole-dipole coupling (Förster) mechanism. Substantial deviation from single-exponential decay of the excited donor (due to the dispersion of donor-acceptor distances) is expected and observed. The time profiles and resulting ΦEET are modeled on the basis of (Förster) energy transfer between chromophores relatively densely packed in a two-dimensional compartment. Initial studies of two ternary and one quaternary combination of chromophores show the enhanced spectral coverage and energy-transfer efficacy expected on the basis of the binary systems. Collectively, this approach may provide one of the simplest designs for

  7. Influence of refractive index and solar concentration on optical power absorption in slabs

    Science.gov (United States)

    Williams, M. D.

    1988-01-01

    The optical power absorbed by a slab at the focus of a parabolic dish concentrator is calculated. The calculations are plotted versus maximum angle of incidence of irradiation (which corresponds to solar concentration) with absorption coefficient as a parameter for several different indices of refraction that represent real materials.

  8. Synthesis and properties of tribranched chromophores with triazine and fluorene units

    Institute of Scientific and Technical Information of China (English)

    Li Liu; Zhi Qiang Zhou; Jie Ping Shi; Chang Gui Lu; Yi Ping Cui; Guo Yuan Lu

    2011-01-01

    Two tribranched chromophores, 1,3,5-triazine as electron deficient core, 9,9-dimethylfluorene as π-conjugated bridge, diphenylamino (4a) and naphthylamino (4b) as electron-donating end-groups, were successfully prepared via Buchwald-Hartwig coupling reaction. Their linear photophysical and two-photon absorption (TPA) properties were investigated by absorption, fluorescence and nonlinear transmission method, respectively. The absorption cut-offs of the chromophores are below 550 run and both chromophores have strong fluorescence emission. The compound 4a (206.3 GM) exhibits larger TPA cross-section than 4b (57.8 GM) in the femtosecond regime at 800 nm.

  9. Correlation between diagnostic 59Fe2+-absorption and serum ferritin concentration in man

    International Nuclear Information System (INIS)

    A high correlation coefficent r = -0.832 (Psub(r not equal to 0) 59Fe2+-absorption and the serum ferritin concentration which is very close to the correlations r = -0.88 59Fe2+-absorption and the diffuse cytoplasmic storage iron in the bone marrow macrophages. The increase of the diagnostic 59Fe2+-absorption seems to be an earlier and more sensitive indicator of depleted iron stores whereas the serum ferritin decreases somewhat later during the development of iron deficiency. (orig.)

  10. Gas concentration measurement by optical similitude absorption spectroscopy: methodology and experimental demonstration.

    Science.gov (United States)

    Anselmo, Christophe; Welschinger, Jean-Yves; Cariou, Jean-Pierre; Miffre, Alain; Rairoux, Patrick

    2016-06-13

    We propose a new methodology to measure gas concentration by light-absorption spectroscopy when the light source spectrum is larger than the spectral width of one or several molecular gas absorption lines. We named it optical similitude absorption spectroscopy (OSAS), as the gas concentration is derived from a similitude between the light source and the target gas spectra. The main OSAS-novelty lies in the development of a robust inversion methodology, based on the Newton-Raphson algorithm, which allows retrieving the target gas concentration from spectrally-integrated differential light-absorption measurements. As a proof, OSAS is applied in laboratory to the 2ν3 methane absorption band at 1.66 µm with uncertainties revealed by the Allan variance. OSAS has also been applied to non-dispersive infra-red and the optical correlation spectroscopy arrangements. This all-optics gas concentration retrieval does not require the use of a gas calibration cell and opens new tracks to atmospheric gas pollution and greenhouse gases sources monitoring. PMID:27410280

  11. Catalytic effect of free iron ions and heme-iron on chromophore oxidation of a polyene antibiotic amphotericin B

    Science.gov (United States)

    Czernel, Grzegorz; Typek, Rafał; Klimek, Katarzyna; Czuryło, Aleksandra; Dawidowicz, Andrzej L.; Gagoś, Mariusz

    2016-05-01

    Owing to the presence of a chromophore in the amphotericin B (AmB) structure, the molecule can undergo the oxidation process. In this research, AmB chromophore oxidation was catalysed by iron ions (iron(III) chloride (FeCl3), pH 2.5) and by heme-iron (methemoglobin (HbFe(III)), and hemin (heme-Fe(III)) at pH 7.0). Additionally, we compared oxidation processes induced by the aforementioned oxidizing agents with autoxidation by dioxygen (O2) naturally occurring in a sample. The effects of the interaction of the oxidizing agents with AmB were analysed using molecular spectroscopies (electronic absorption (UV-Vis), fluorescence) and LC-MS. The use of a 1,10-phenanthroline (phen) chelator facilitated unambiguous determination of the oxidative effect of free iron(III) ions (FeIII) in an acidic solution on the AmB molecules. Also, the changes in the spectra of fluorescence emission centred at ∼470 nm indicate iron-catalysed processes of AmB chromophore oxidation. Unexpectedly, we found a similar spectroscopic effect for AmB induced by methemoglobin and hemin at pH 7.0. Methemoglobin and hemin at a concentration of 8 × 10-7 M (physiological) significantly increases the rate of the processes of AmB chromophore oxidation relative to the process of autoxidation.

  12. [Gas Concentration Measurement Based on the Integral Value of Absorptance Spectrum].

    Science.gov (United States)

    Liu, Hui-jun; Tao, Shao-hua; Yang, Bing-chu; Deng, Hong-gui

    2015-12-01

    The absorptance spectrum of a gas is the basis for the qualitative and quantitative analysis of the gas by the law of the Lambert-Beer. The integral value of the absorptance spectrum is an important parameter to describe the characteristics of the gas absorption. Based on the measured absorptance spectrum of a gas, we collected the required data from the database of HIT-RAN, and chose one of the spectral lines and calculated the integral value of the absorptance spectrum in the frequency domain, and then substituted the integral value into Lambert-Beer's law to obtain the concentration of the detected gas. By calculating the integral value of the absorptance spectrum we can avoid the more complicated calculation of the spectral line function and a series of standard gases for calibration, so the gas concentration measurement will be simpler and faster. We studied the changing trends of the integral values of the absorptance spectrums versus temperature. Since temperature variation would cause the corresponding variation in pressure, we studied the changing trends of the integral values of the absorptance spectrums versus both the pressure not changed with temperature and changed with the temperature variation. Based on the two cases, we found that the integral values of the absorptance spectrums both would firstly increase, then decrease, and finally stabilize with temperature increasing, but the ranges of specific changing trend were different in the two cases. In the experiments, we found that the relative errors of the integrated values of the absorptance spectrum were much higher than 1% and still increased with temperature when we only considered the change of temperature and completely ignored the pressure affected by the temperature variation, and the relative errors of the integrated values of the absorptance spectrum were almost constant at about only 1% when we considered that the pressure were affected by the temperature variation. As the integral value

  13. Tunable dual-band light trapping and absorption enhancement with graphene concentric ring arrays

    CERN Document Server

    Xiao, Shuyuan; Liu, Yuebo; Han, Xu; Yan, Xicheng

    2016-01-01

    Surface plasmon resonance (SPR) has been intensively studied and widely employed for light trapping and absorption enhancement. In the mid-infrared and terahertz (THz) regime, graphene supports the tunable SPR via manipulating its Fermi energy and enhances light-matter interaction at the selective wavelength. In this paper, a pair of graphene concentric rings has been proposed to introduce tunable dual-band light trapping with good angle polarization tolerance and enhance the absorption in the low light-absorbing efficiency materials nearby to more than one order. Moreover, the design principle here could be set as a template to achieve multi-band plasmonic absorption enhancement by introducing more graphene concentric rings into each unit cell. This work not only opens up new ways of employing graphene SPR, but also leads to practical applications in high-performance simultaneous multi-color photodetection with high efficiency and tunable spectral selectivity.

  14. [Detection technology of methane gas concentration based on infrared absorption spectrum].

    Science.gov (United States)

    Luo, Da-Feng; Yang, Jian-Hua; Zhong, Chong-Gui

    2011-02-01

    According to the disadvantages of current methane sensor in coal mine, the infrared methane concentration detection system based on the principle of infrared spectrum absorption was designed using differential absorption technology. In the system single light beam absorbing cell and single light beam and double wavelengths technology are adopted. Differential amplifier circuit serves as the core of faint signal processing circuit that detects the output signal of methane concentration, and linear formula fits the curve of methane concentration and output voltage, which realizes accurate and full range detection of gas concentration. Experiment shows that measurement error is less than 2%, and the system has very high measurement precision and possesses the basis of industrial applications. PMID:21510386

  15. A 2-Micron Pulsed Integrated Path Differential Absorption Lidar Development For Atmospheric CO2 Concentration Measurements

    Science.gov (United States)

    Yu, Jirong; Petros, Mulugeta; Reithmaier, Karl; Bai, Yingxin; Trieu, Bo C.; Refaat, Tamer F.; Kavaya, Michael J.; Singh, Upendra N.

    2012-01-01

    A 2-micron pulsed, Integrated Path Differential Absorption (IPDA) lidar instrument for ground and airborne atmospheric CO2 concentration measurements via direct detection method is being developed at NASA Langley Research Center. This instrument will provide an alternate approach to measure atmospheric CO2 concentrations with significant advantages. A high energy pulsed approach provides high-precision measurement capability by having high signal-to-noise level and unambiguously eliminates the contamination from aerosols and clouds that can bias the IPDA measurement.

  16. Molecular Characterization of Brown Carbon (BrC) Chromophores in Secondary Organic Aerosol Generated From Photo-Oxidation of Toluene

    Energy Technology Data Exchange (ETDEWEB)

    Lin, Peng; Liu, Jiumeng; Shilling, John E.; Kathmann, Shawn M.; Laskin, Julia; Laskin, Alexander

    2015-09-28

    Atmospheric Brown carbon (BrC) is a significant contributor to light absorption and climate forcing. However, little is known about a fundamental relationship between the chemical composition of BrC and its optical properties. In this work, light-absorbing secondary organic aerosol (SOA) was generated in the PNNL chamber from toluene photo-oxidation in the presence of NOx (Tol-SOA). Molecular structures of BrC components were examined using nanospray desorption electrospray ionization (nano-DESI) and liquid chromatography (LC) combined with UV/Vis spectroscopy and electrospray ionization (ESI) high-resolution mass spectrometry (HRMS). The chemical composition of BrC chromophores and the light absorption properties of toluene SOA (Tol-SOA) depend strongly on the initial NOx concentration. Specifically, Tol-SOA generated under high-NOx conditions (defined here as initial NOx/toluene of 5/1) appears yellow and mass absorption coefficient of the bulk sample (MACbulk@365nm = 0.78 m2 g-1) is nearly 80 fold higher than that measured for the Tol-SOA sample generated under low-NOx conditions (NOx/toluene < 1/300). Fifteen compounds, most of which are nitrophenols, are identified as major BrC chromophores responsible for the enhanced light absorption of Tol-SOA material produced in the presence of NOx. The integrated absorbance of these fifteen chromophores accounts for 40-60% of the total light absorbance by Tol-SOA at wavelengths between 300 nm and 500 nm. The combination of tandem LC-UV/Vis-ESI/HRMS measurements provides an analytical platform for predictive understanding of light absorption properties by BrC and their relationship to the structure of individual chromophores. General trends in the UV/vis absorption by plausible isomers of the BrC chromophores were evaluated using theoretical chemistry calculations. The molecular-level understanding of BrC chemistry is helpful for better understanding the evolution and behavior of light absorbing aerosols in the atmosphere.

  17. Subcutaneous absorption kinetics of two highly concentrated preparations of recombinant human growth hormone

    DEFF Research Database (Denmark)

    Laursen, Torben; Jørgensen, Jens Otto Lunde; Susgaard, Søren;

    1993-01-01

    Abstract OBJECTIVE: The relative bioavailability of two highly concentrated (12 IU/ml) formulations of biosynthetic human growth hormone (GH) administered subcutaneously was compared. DESIGN: A randomized, crossover study. Conventional GH therapy was withdrawn 72 hours before each study period...... frequently for 24 hours. Samples were taken every 30 minutes for 6 hours and then hourly. MAIN OUTCOME MEASURES: Bioavailability (F) and absorption dynamics of human GH were measured. The relative absorption fractions estimated from the areas under the individual serum concentration curves from 0 to 24 hours......, and the observed time (Tmax) to reach the maximum concentration (Cmax) were determined. Short-term metabolic effects of GH on insulin-like growth factor (IGF-I), glucose, and insulin were determined. RESULTS: The geometric mean (SD) of F was 0.910 (1,236). The 90 percent confidence interval was 0...

  18. 藻类内源产生有色溶解有机物的吸收和三维荧光特性研究%Absorption and Fluorescence Properties of Chromophoric Dissolved Organic Matter Produced by Algae

    Institute of Scientific and Technical Information of China (English)

    彭彤; 陆小兰; 苏荣国; 张栋梅

    2015-01-01

    dinoflagellates (Prorocentrum donghaiense and Gym-nodinium)were cultured under laboratory conditions.Variations of optical properties of chromophoric dis-solved organic matter (CDOM)were studied with absorption and fluorescence excitation-emission matrix spec-troscopy(EEM)during growth of marine microalgae in incubation experiment.Absorption spectrum revealed absorption coefficientα(355)(CDOM absorption coefficients at 355 nm)of 6 kinds of marine microalgae above increased by 64.8%,242.3%,535.1%,903.2%,836% and 196.4%,respectively.Simultaneously,the ab-sorption spectral slope(Sg),determined between 270 and 350 nm,representing the size of molecular weight of CDOM and humic-like composition,decreased by 8.7%,34.6%,39.4%,53.1%,46.7%,and 35.7%,re-spectively.Applying parallel factor analysis (PARAFAC)together with EEM got four components of CDOM:C1(Ex/Em=350(260)nm/450 nm),C2 (Ex/Em=260(430)nm/525 nm),C3 (Ex/Em=325 nm/400 nm) and C4(Ex/Em=275 nm/325 nm),which were relative to three humic-like and one protein-like fluorescent components of Nitzschia closterium f .minutissima and Navicula halophile .In incubation experiment,fluo-rescence intensity of these four components during growth of Nitzschia closterium f .minutissima increased by,respectively,8.68,24.9,7.19 and 39.8 times,and those of Navicula halophile increased by 2.64,0.07, 4.39 and 12.4 times,respectively.Significant relationships were found between the fluorescence intensity of four components of CDOM,α(355)and Sg.All results demonstrated that both content and molecular weight of CDOM produced by diatom and dinoflagellate studied in incubation experiment increased,but these two pa-rameters changed more obviously of the diatom than those of dinoflagellate;the proportion of humic-like com-ponents in the composition of CDOM also increased clearly with the growth of marine microalgae,but protein-like fluorescent component had only a slow growth.Furthermore,the absorption spectrum of CDOM produced by different species of algae

  19. Theoretical investigation of nonlinear properties of electrooptical chromophores

    Institute of Scientific and Technical Information of China (English)

    Zhou Yu-fang; Zhuang De-xin

    2004-01-01

    Organic electrooptical (EO) chromophores are now gaining more attention because the property of organic photorefrative (PR) materials could be controlled by doped EO chromophores. In this paper, nonlinear optical (NLO) properties of a new group of organic electrooptical chromophores, synthesized recently in our laboratory, were elucidated theoretically with the quantum chemical density functional theory (DFT) and the intermediate neglect of differential overlap Hamilton and the configuration interaction (INDO/CI), as well as semiemperical Austin Model 1 (AM1) methods. The electronic transition intensity, dipole moment and the second- order polarizability were obtained. The results show this group of chrormophores possess appropriate optical absorption property and good electrooptical property and optical activity. The second-order polarizabilities βare as large as the order of 10-29 to 10-28 ESU, indicating the promising applications in the future. The physical mechanism of NLO is discussed by means of molecular orbital and electronic charge distribution.

  20. Absorption-edge transmission technique using Ce- 139 for measurement of stable iodine concentration.

    Science.gov (United States)

    Sorenson, J A

    1979-12-01

    We have investigated a technique for measuring stable iodine concentrations by absorption-edge transmission measurements using a Ce 139 radiation source. The lanthanum daughter emits characteristic x-rays whose energies just bracket the absorption edge of iodine at 33.2 keV. Relative transmission of these x-rays is sensitive to iodine concentration in the sample, but is relatively insensitive to other elements. By applying energy-selective beam filtration, it is possible to determine the relative transmission of these closely spaced x-ray energies with NaI(Tl) detectors. Optimizations of sample thickness, detector thickness, and Ce-139 source activity are discussed. Using sample volumes of about 10 ml, one can determine iodine concentration to an uncertainty (standard deviation) of +/- 5 microgram/ml with a 5-mCi source in a measurement time of 400 sec. Potential clinical applications of the in vitro technique are discussed, along with comparative aspects of the Ce-139 technique and other absorption and fluorescence techniques for measuring stable iodine.

  1. The determination, by atomic-absorption spectrophotometry, of trace elements in sulphide concentrates

    International Nuclear Information System (INIS)

    The separation, concentration, and determination of trace elements in base-metal and sulphide concentrates are described. After the sample has been dissolved, the trace elements that form insoluble hydroxides are precipitated with lanthanum as the coprecipitant and are separated from those elements that form soluble amines with ammonia. The precipitate is dissolved, and the trace elements selenium, tellurium, arsenic, antimony, bismuth, tin, vanadium, chromium, manganese, and aluminium are determined by atomic-absorption spectrophotometry. Coefficients of variation between 1 and 10 per cent, depending on the amount of the element, were obtained, with limits of determination ranging from 0,1 to 50 p.p.m

  2. Search for Singlet Fission Chromophores

    Energy Technology Data Exchange (ETDEWEB)

    Havlas, Z.; Akdag, A.; Smith, M. B.; Dron, P.; Johnson, J. C.; Nozik, A. J.; Michl, J.

    2012-01-01

    Singlet fission, in which a singlet excited chromophore shares its energy with a ground-state neighbor and both end up in their triplet states, is of potential interest for solar cells. Only a handful of compounds, mostly alternant hydrocarbons, are known to perform efficiently. In view of the large number of conditions that a successful candidate for a practical cell has to meet, it appears desirable to extend the present list of high performers to additional classes of compounds. We have (i) identified design rules for new singlet fission chromophores and for their coupling to covalent dimers, (ii) synthesized them, and (iii) evaluated their performance as neat solids or covalent dimers.

  3. Synthesis of Diazacrown Ethers with Chromophores and Their Photoinduced Charge-Separation with Methyl Viologen

    Institute of Scientific and Technical Information of China (English)

    李久艳; 张丽萍; 吴骊珠; 王波杰; 佟振合

    2001-01-01

    Two 4,13-diaza-18-crown-6 ethers with either two pyrenyl or two carbazolyl groups were synthesized. The two crown ethers can form complexes with methyl viologen in methanol solution. Photoirradiation of the complexes resulted in the electron transfer from the excited states of the chromophores to methyl viologen as demonstrated by the quenching of the chromophore fluorescence and the detection of the absorption spectrum of the generated viologen radical cation. The back electron transfer in these systems was inhibited by the electrostatic repulsion between the positively charged viologen radical cation and the generated chromophore radical cation. Longlived charge separation states (up to tens of min) were observed.

  4. Measurements of liquid film thickness, concentration, and temperature of aqueous urea solution by NIR absorption spectroscopy

    Science.gov (United States)

    Pan, R.; Jeffries, J. B.; Dreier, T.; Schulz, C.

    2016-01-01

    A multi-wavelength near-infrared (NIR) diode laser absorption sensor has been developed and demonstrated for real-time monitoring of the thickness, solute concentration, and temperature of thin films of urea-water solutions. The sensor monitors the transmittance of three near-infrared diode lasers through the thin liquid film. Film thickness, urea mass fraction, and liquid temperature were determined from measured transmittance ratios of suitable combinations of lasers. Available laser wavelengths were selected depending on the variation of the NIR absorption spectrum of the solution with temperature and solute concentration. The spectral database was measured by a Fourier transform infrared spectrometer in the range 5500-8000 cm-1 for urea solutions between 5 and 40 wt% and temperatures between 298 and 338 K. A prototype sensor was constructed, and the sensor concept was first validated with measurements using a calibration cell providing liquid layers of variable thickness (200-1500 µm), urea mass fraction (5-40 wt%) and temperature (298-318 K). Temporal variations of film thickness and urea concentration were captured during the constant-temperature evaporation of a liquid film deposited on an optically polished heated quartz flat.

  5. Evidence of In Vivo Absorption of Lactate and Modulation of Short Chain Fatty Acid Absorption from the Reticulorumen of Non-Lactating Cattle Fed High Concentrate Diets

    Science.gov (United States)

    Qumar, Muhammad; Khiaosa-ard, Ratchaneewan; Pourazad, Poulad; Wetzels, Stefanie U.; Klevenhusen, Fenja; Kandler, Wolfgang; Aschenbach, Jörg R.; Zebeli, Qendrim

    2016-01-01

    Short-chain fatty acids (SCFAs) and lactate are endproducts of rumen fermentation and important energy sources for the host ruminant. Because their rapid accumulation results in ruminal acidosis, enhancement of the absorption of SCFA and lactate across reticuloruminal wall is instrumental in increasing energy supply and preventing ruminal acidosis in cattle. This study investigated whether the reticuloruminal absorption of SCFAs and lactate was altered by different strategies of high concentrate feeding. Eight rumen-cannulated, non-lactating Holstein cows were fed a forage-only diet (baseline) and then gradually adapted over 6 d to a 60% concentrate level. Thereafter, this concentrate-rich diet was fed for 4 wk either continuously (Con; n = 8) or interruptedly (Int; n = 8). Absorption of SCFAs and lactate was determined in vivo from the experimental buffer introduced into the washed reticulorumen. The buffer contained acetate, propionate, butyrate and lactate at a concentration of 60, 30, 10 and 5 mmol/L, respectively and Cr-EDTA as a marker for correcting ruminal water fluxes. The reticuloruminal absorption after 35 and 65 min of buffer incubation was measured at the baseline, after 1 wk of 60% concentrate feeding in the interrupted model (Int-1) and after 4 wk of concentrate feeding in both feeding models (Int-4 and Con-4). Data showed that the absorption rates of individual and total SCFAs during the first 35 min of incubation of Con-4 were highest (~1.7 times compared to baseline), while Int-1 and Int-4 were similar to respective baseline. Lactate was not absorbed during forage-only baseline and 1-wk concentrate feeding, but after 4-wk feeding of concentrates in both models. In conclusion, SCFAs absorption across the reticulorumen of non-lactating cattle was enhanced by the 4-wk continuous concentrate feeding, which seems to be more advantageous in terms of rumen acidosis prevention compared to the interrupted feeding model. The study provides evidence of

  6. Photoproduction of hydrogen peroxide in aqueous solution from model compounds for chromophoric dissolved organic matter (CDOM)

    International Nuclear Information System (INIS)

    Highlights: • CDOM produces hydrogen peroxide in sunlit surface waters. • Quinone moieties have been proposed as the photo-active chromophore in CDOM. • Hydrogen peroxide is produced in irradiated aqueous quinone solutions. • Concentrations and production rates are comparable to humic and fulvic acids. • Optical properties post-irradiation were similar to CDOM. - Abstract: To explore whether quinone moieties are important in chromophoric dissolved organic matter (CDOM) photochemistry in natural waters, hydrogen peroxide (H2O2) production and associated optical property changes were measured in aqueous solutions irradiated with a Xenon lamp for CDOM model compounds (dihydroquinone, benzoquinone, anthraquinone, napthoquinone, ubiquinone, humic acid HA, fulvic acid FA). All compounds produced H2O2 with concentrations ranging from 15 to 500 μM. Production rates were higher for HA vs. FA (1.32 vs. 0.176 mM h−1); values ranged from 6.99 to 0.137 mM h−1 for quinones. Apparent quantum yields (Θapp; measure of photochemical production efficiency) were higher for HA vs. FA (0.113 vs. 0.016) and ranged from 0.0018 to 0.083 for quinones. Dihydroquinone, the reduced form of benzoquinone, had a higher production rate and efficiency than its oxidized form. Post-irradiation, quinone compounds had absorption spectra similar to HA and FA and 3D-excitation–emission matrix fluorescence spectra (EEMs) with fluorescent peaks in regions associated with CDOM

  7. Chromophore Deprotonation State Alters the Optical Properties of Blue Chromoprotein.

    Directory of Open Access Journals (Sweden)

    Cheng-Yi Chiang

    Full Text Available Chromoproteins (CPs have unique colors and can be used in biological applications. In this work, a novel blue CP with a maximum absorption peak (λmax at 608 nm was identified from the carpet anemone Stichodactyla gigantea (sgBP. In vivo expression of sgBP in zebrafish would change the appearance of the fishes to have a blue color, indicating the potential biomarker function. To enhance the color properties, the crystal structure of sgBP at 2.25 Å resolution was determined to allow structure-based protein engineering. Among the mutations conducted in the Gln-Tyr-Gly chromophore and chromophore environment, a S157C mutation shifted the λmax to 604 nm with an extinction coefficient (ε of 58,029 M-1·cm-1 and darkened the blue color expression. The S157C mutation in the sgBP chromophore environment could affect the color expression by altering the deprotonation state of the phenolic group in the chromophore. Our results provide a structural basis for the blue color enhancement of the biomarker development.

  8. Mesure de la concentration absolue de SiO parspectroscopie d'absorption UV

    Science.gov (United States)

    Coursimault, F.; Motret, O.; Viladrosa, R.; Pouvesle, J. M.

    2003-06-01

    Le but de cette étude est de développer un diagnostic de mesure de concentration de Si0 adapté à un procédé industriel de dépôt d'oxydes de silicium sur polymères par décharge a barrière diélectrique atmosphérique (DBD). Deux méthodes spectroscopiques basées sur des techniques d'absorption et d'auto-absorption ont été développées. La concentration de Si0 a été estimée par ajustement des spectres synthétiques calculés sur les spectres expérimentaux. Ces deux méthodes permettent de suivre l'évolution temporelle de Si0 durant les phases de décharge et de post-décharge.

  9. Performance Evaluation of a Nanofluid-Based Direct Absorption Solar Collector with Parabolic Trough Concentrator

    Directory of Open Access Journals (Sweden)

    Guoying Xu

    2015-12-01

    Full Text Available Application of solar collectors for hot water supply, space heating, and cooling plays a significant role in reducing building energy consumption. For conventional solar collectors, solar radiation is absorbed by spectral selective coating on the collectors’ tube/plate wall. The poor durability of the coating can lead to an increased manufacturing cost and unreliability for a solar collector operated at a higher temperature. Therefore, a novel nanofluid-based direct absorption solar collector (NDASC employing uncoated collector tubes has been proposed, and its operating characteristics for medium-temperature solar collection were theoretically and experimentally studied in this paper. CuO/oil nanofluid was prepared and used as working fluid of the NDASC. The heat-transfer mechanism of the NDASC with parabolic trough concentrator was theoretically evaluated and compared with a conventional indirect absorption solar collector (IASC. The theoretical analysis results suggested that the fluid’s temperature distribution in the NDASC was much more uniform than that in the IASC, and an enhanced collection efficiency could be achieved for the NDASC operated within a preferred working temperature range. To demonstrate the feasibility of the proposed NDASC, experimental performances of an NDASC and an IASC with the same parabolic trough concentrator were furthermore evaluated and comparatively discussed.

  10. Cluster analysis of diurnal variations in BC concentration from Multi-Angle Absorption Photometer

    Science.gov (United States)

    Han, Y.; KIM, C.; Park, J.; Choi, Y.; Ghim, Y.

    2013-12-01

    Black carbon (BC) is emitted from incomplete combustion of carbon-containing fuels, such as fossil fuels (diesel and coal) and biomass burning (forest fires and burning of agricultural waste). We have measured BC concentration using MAAP (Multi-Angle Absorption Photometer, Model 5012, Thermo Scientific) during the past few years. The measurement site is on the rooftop of the five-story building on the hill (37.02 °N, 127.16 °E, 167 m above sea level), about 35 km southeast of Seoul; there are no major emission sources nearby except a 4-lane road running about 1.4 km to the west. Previous studies reveal that the effects of vehicle emissions are not as direct as urban sites but those of biomass burning are general. Diurnal variations of BC concentration are classified using cluster analysis. Typical patterns are determined to identify the primary emissions and their effects on the concentration level. High concentration episodes are discriminated and major factors that influence the evolution of the episodes are investigated.

  11. Concentration measurement of NO using self-absorption spectroscopy of the γ band system in a pulsed corona discharge.

    Science.gov (United States)

    Zhai, Xiaodong; Ding, Yanjun; Peng, Zhimin; Luo, Rui

    2012-07-10

    Nitric oxide (NO) concentrations were measured using the γ band system spectrum based on the strong self-absorption effect of NO in pulsed corona discharges. The radiative transitional intensities of the NO γ band were simulated based on the theory of molecular spectroscopy. The intensities of some bands, especially γ(0,0) and γ(1,0), are weakened by the self-absorption. The correlations between the spectral self-absorption intensities and NO concentration were validated using a modified Beer-Lambert law with a combined factor K relating the branching ratio and the NO concentration, and a nonlinear index α that is applicable to the broadband system. Optical emissive spectra in pulsed corona discharges in NO and N2/He mixtures were used to evaluate the two parameters for various conditions. Good agreement between the experimental and theoretical results verifies the self-absorption behavior seen in the UV spectra of the NO γ bands. PMID:22781235

  12. Chromophore composition of the phycobiliprotein Cr-PC577 from the cryptophyte Hemiselmis pacifica.

    Science.gov (United States)

    Overkamp, Kristina E; Langklotz, Sina; Aras, Marco; Helling, Stefan; Marcus, Katrin; Bandow, Julia E; Hoef-Emden, Kerstin; Frankenberg-Dinkel, Nicole

    2014-12-01

    The cryptophyte phycocyanin Cr-PC577 from Hemiselmis pacifica is a close relative of Cr-PC612 found in Hemiselmis virescens and Hemiselmis tepida. The two biliproteins differ in that Cr-PC577 lacks the major peak at around 612 nm in the absorption spectrum. Cr-PC577 was thus purified and characterized with respect to its bilin chromophore composition. Like other cryptophyte phycobiliproteins, Cr-PC577 is an (αβ)(α'β) heterodimer with phycocyanobilin (PCB) bound to the α-subunits. While one chromophore of the β-subunit is also PCB, mass spectrometry identified an additional chromophore with a mass of 585 Da at position β-Cys-158. This mass can be attributed to either a dihydrobiliverdin (DHBV), mesobiliverdin (MBV), or bilin584 chromophore. The doubly linked bilin at position β-Cys-50 and β-Cys-61 could not be identified unequivocally but shares spectral features with DHBV. We found that Cr-PC577 possesses a novel chromophore composition with at least two different chromophores bound to the β-subunit. Overall, our data contribute to a better understanding of cryptophyte phycobiliproteins and furthermore raise the question on the biosynthetic pathway of cryptophyte chromophores.

  13. Chromophore composition of the phycobiliprotein Cr-PC577 from the cryptophyte Hemiselmis pacifica.

    Science.gov (United States)

    Overkamp, Kristina E; Langklotz, Sina; Aras, Marco; Helling, Stefan; Marcus, Katrin; Bandow, Julia E; Hoef-Emden, Kerstin; Frankenberg-Dinkel, Nicole

    2014-12-01

    The cryptophyte phycocyanin Cr-PC577 from Hemiselmis pacifica is a close relative of Cr-PC612 found in Hemiselmis virescens and Hemiselmis tepida. The two biliproteins differ in that Cr-PC577 lacks the major peak at around 612 nm in the absorption spectrum. Cr-PC577 was thus purified and characterized with respect to its bilin chromophore composition. Like other cryptophyte phycobiliproteins, Cr-PC577 is an (αβ)(α'β) heterodimer with phycocyanobilin (PCB) bound to the α-subunits. While one chromophore of the β-subunit is also PCB, mass spectrometry identified an additional chromophore with a mass of 585 Da at position β-Cys-158. This mass can be attributed to either a dihydrobiliverdin (DHBV), mesobiliverdin (MBV), or bilin584 chromophore. The doubly linked bilin at position β-Cys-50 and β-Cys-61 could not be identified unequivocally but shares spectral features with DHBV. We found that Cr-PC577 possesses a novel chromophore composition with at least two different chromophores bound to the β-subunit. Overall, our data contribute to a better understanding of cryptophyte phycobiliproteins and furthermore raise the question on the biosynthetic pathway of cryptophyte chromophores. PMID:25134685

  14. Determination of molybdenum in silicates through atomic absorption spectrometry using pre-concentration by active carbon

    International Nuclear Information System (INIS)

    An analytical procedure for molybdenum determination in geological materials through Atomic Absorption Spectrometry, after pre-concentration of the Mo-APDC complex in activated carbon, has been developed, which is needed in order to reduce the dilution effect in the sample decomposition. During the development of this method the influence of pH, the amount of APDC for complexation of Mo and the interference of Fe, Ca, Mn, Al, K, Na, Mg and Ti were tested. It was shown that none of these causes any significant effect on the Mo determination proposed. The results of the analysis at the international geochemical reference samples JB-1 (basalt) and GH (granite) were very accurate and showed that the detection limit in rocks (1,00g) is 0,6 ppm, when using sample dilution of 1 ml and microinjection techniques. (author)

  15. Method Of Signal Amplification In Multi-Chromophore Luminescence Sensors

    Energy Technology Data Exchange (ETDEWEB)

    Levitsky, Igor A. (Fall River, MA); Krivoshlykov, Sergei G. (Shrewsbury, MA)

    2004-02-03

    A fluorescence-based method for highly sensitive and selective detection of analyte molecules is proposed. The method employs the energy transfer between two or more fluorescent chromophores in a carefully selected polymer matrix. In one preferred embodiment, signal amplification has been achieved in the fluorescent sensing of dimethyl methylphosphonate (DMMP) using two dyes, 3-aminofluoranthene (AM) and Nile Red (NR), in a hydrogen bond acidic polymer matrix. The selected polymer matrix quenches the fluorescence of both dyes and shifts dye emission and absorption spectra relative to more inert matrices. Upon DMMP sorption, the AM fluorescence shifts to the red at the same time the NR absorption shifts to the blue, resulting in better band overlap and increased energy transfer between chromophores. In another preferred embodiment, the sensitive material is incorporated into an optical fiber system enabling efficient excitation of the dye and collecting the fluorescent signal form the sensitive material on the remote end of the system. The proposed method can be applied to multichromophore luminescence sensor systems incorporating N-chromophores leading to N-fold signal amplification and improved selectivity. The method can be used in all applications where highly sensitive detection of basic gases, such as dimethyl methylphosphonate (DMMP), Sarin, Soman and other chemical warfare agents having basic properties, is required, including environmental monitoring, chemical industry and medicine.

  16. Photophysical properties of octupolar chromophore based on triazine core and fluorene divinylene conjugated bridge

    Institute of Scientific and Technical Information of China (English)

    Li Wei; Jie Ping Shi; Zhi Qiang Zhou; Yi Ping Cui; Hong Wen Hu; Guo Yuan Lu

    2012-01-01

    A novel octupolar chromophore with 1,3,5-triazine as core,2,7-divinylene-9,9-dimethylfluorene as extended π-conjugated bridge,triarylamine as the electron-donating end-groups was successfully synthesized and characterized.Their linear photo-physical and two-photon absorption (TPA) properties were investigated by UV absorption,excited fluorescence (SPEF) spectra and nonlinear transmission method,respectively.The absorption cut-off of the chromophore is below 520 nm and it has stronger fluorescence emission in a nonpolar solvent.In addition,the chromophore exhibits larger TPA cross-section (226.0 GM) in the femtosecond regime at 800 nm.

  17. THE RADIAL DISTRIBUTION OF WATER ICE AND CHROMOPHORES ACROSS SATURN'S SYSTEM

    Energy Technology Data Exchange (ETDEWEB)

    Filacchione, G.; Capaccioni, F.; Cerroni, P.; Tosi, F.; Ciarniello, M. [INAF-IAPS, Istituto di Astrofisica e Planetologia Spaziali, Area di Ricerca di Tor Vergata, via del Fosso del Cavaliere, 100, I-00133, Rome (Italy); Clark, R. N. [Federal Center, US Geological Survey, Denver, CO 80228 (United States); Nicholson, P. D.; Lunine, J. I.; Hedman, M. M. [Astronomy Department, Cornell University, 418 Space Sciences Building, Ithaca, NY 14853 (United States); Cruikshank, D. P.; Cuzzi, J. N. [NASA Ames Research Center, Moffett Field, CA 94035-1000 (United States); Brown, R. H. [Lunar Planetary Laboratory, University of Arizona, Kuiper Space Sciences 431A, Tucson, AZ 85721-0092 (United States); Buratti, B. J. [NASA Jet Propulsion Laboratory, California Institute of Technology, 4800 Oak Grove Drive, Pasadena, CA 91109 (United States); Flamini, E., E-mail: gianrico.filacchione@iaps.inaf.it [ASI, Italian Space Agency, viale Liegi 26, I-00198 Rome (Italy)

    2013-04-01

    Over the past eight years, the Visual and Infrared Mapping Spectrometer (VIMS) on board the Cassini orbiter has returned hyperspectral images in the 0.35-5.1 {mu}m range of the icy satellites and rings of Saturn. These very different objects show significant variations in surface composition, roughness, and regolith grain size as a result of their evolutionary histories, endogenic processes, and interactions with exogenic particles. The distributions of surface water ice and chromophores, i.e., organic and non-icy materials, across the Saturnian system, are traced using specific spectral indicators (spectral slopes and absorption band depths) obtained from rings mosaics and disk-integrated satellites observations by VIMS. Moving from the inner C ring to Iapetus, we found a marking uniformity in the distribution of abundance of water ice. On the other hand, the distribution of chromophores is much more concentrated in the rings particles and on the outermost satellites (Rhea, Hyperion, and Iapetus). A reduction of red material is observed on the satellites' surfaces orbiting within the E ring environment likely due to fine particles from Enceladus' plumes. Once the exogenous dark material covering the Iapetus' leading hemisphere is removed, the texture of the water ice-rich surfaces, inferred through the 2 {mu}m band depth, appears remarkably uniform across the entire system.

  18. Noninvasive monitoring of glucose concentration using differential absorption low-coherence interferometry based on rapid scanning optical delay line

    Energy Technology Data Exchange (ETDEWEB)

    Zhou Yong; Zeng Nan; He Yonghong, E-mail: heyh@sz.tsinghua.edu.cn [Laboratory of Optical Imaging and Sensing, Graduate School at Shenzhen, Tsinghua University, Shenzhen, 518055 (China)

    2011-01-01

    A non-invasive method of detecting glucose concentration using differential absorption low-coherence interferometry (DALCI) based on rapid scanning optical delay line is presented. Two light sources, one centered within (1625 nm) a glucose absorption band, while the other outside (1310 nm) the glucose absorption band, are used in the experiment. The low-coherence interferometry (LCI) is employed to obtain the signals back-reflecting from the iris which carries the messages of material concentration in anterior chamber. Using rapid scanning optical delay line (RSOD) as the reference arm, we can detect the signals in a very short time. Therefore the glucose concentration can be monitored in real-time, which is very important for the detection in vivo. In our experiments, the cornea and aqueous humor can be treated as nearly non-scattering substance. The difference in the absorption coefficient is much larger than the difference in the scattering coefficient, so the influence of scattering can be neglected. By subtracting the algorithmic low-coherence interference signals of the two wavelengths, the absorption coefficient can be calculated which is proportional to glucose concentration. To reduce the speckle noise, a 30 variation of signals were used before the final calculation of the glucose concentration. The improvements of our experiment are also discussed in the article. The method has a potential application for noninvasive detection of glucose concentration in vivo and in real-time.

  19. Photo-fragmentation and electron-detachment studies of gas-phase chromophore ions

    DEFF Research Database (Denmark)

    Rahbek, Dennis Bo

    During my time as a PhD-student I have worked on increasing our knowledge of biologically relevant photoactive proteins. More specifically, I have studied chromophores that are found within some of these proteins. Upon absorbing a photon, the chromophore initiates a process within the protein...... excitation energy. This results in a competition between de-excitation by internal conversion and electron emission. Both of these processes are of non-adiabatic character as they rely on coupling between electronic energy and energy in nuclear motion. Moreover, it is found that higher-lying states...... in the anionic forms serves as ‘doorway’- states into the continuum of the neutral radical. Regarding the structural isomeric forms of each of the chromophores we find that the degree of electronic coupling between the subunitsmaking up the chromophores is crucial for the tuning the absorption properties, both...

  20. Determination of optimal source-detector separation in measuring chromophores in layered tissue with diffuse reflectance

    Institute of Scientific and Technical Information of China (English)

    Yunhan Luo; Houxin Cui; Xiaoyu Gu; Rong Liu; Kexin Xu

    2005-01-01

    Based on analysis of the relation between mean penetration depth and source-detector separation in a threelayer model with the method of Monte-Carlo simulation, an optimal source-detector separation is derived from the mean penetration depth referring to monitoring the change of chromophores concentration of the sandwiched layer. In order to verify the separation, we perform Monte-Carlo simulations with varied absorption coefficient of the sandwiched layer. All these diffuse reflectances are used to construct a calibration model with the method of partial least square (PLS). High correlation coefficients and low root mean square error of prediction (RMSEP) at the optimal separation have confirmed correctness of the selection. This technique is expected to show light on noninvasive diagnosis of near-infrared spectroscopy.

  1. Time-resolved detection of temperature, concentration, and pressure in a shock tube by intracavity absorption spectroscopy

    Science.gov (United States)

    Fjodorow, Peter; Fikri, Mustapha; Schulz, Christof; Hellmig, Ortwin; Baev, Valery M.

    2016-06-01

    In this paper, we demonstrate the first application of intracavity absorption spectroscopy (ICAS) for monitoring species concentration, total pressure, and temperature in shock-tube experiments. ICAS with a broadband Er3+-doped fiber laser is applied to time-resolved measurements of absorption spectra of shock-heated C2H2. The measurements are performed in a spectral range between 6512 and 6542 cm-1, including many absorption lines of C2H2, with a time resolution of 100 µs and an effective absorption path length of 15 m. Up to 18-times increase of the total pressure and a temperature rise of up to 1200 K have been monitored. Due to the ability of simultaneously recording many absorption lines in a broad spectral range, the presented technique can also be applied to multi-component analysis of transient single-shot processes in reactive gas mixtures in shock tubes, pulse detonation engines, or explosions.

  2. Assessment of the performance of a compact concentric spectrometer system for Atmospheric Differential Optical Absorption Spectroscopy

    Directory of Open Access Journals (Sweden)

    C. Whyte

    2009-12-01

    Full Text Available A breadboard demonstrator of a novel UV/VIS grating spectrometer has been developed based upon a concentric arrangement of a spherical meniscus lens, concave spherical mirror and curved diffraction grating suitable for a range of atmospheric remote sensing applications from the ground or space. The spectrometer is compact and provides high optical efficiency and performance benefits over traditional instruments. The concentric design is capable of handling high relative apertures, owing to spherical aberration and comma being near zero at all surfaces. The design also provides correction for transverse chromatic aberration and distortion, in addition to correcting for the distortion called "smile", the curvature of the slit image formed at each wavelength. These properties render this design capable of superior spectral and spatial performance with size and weight budgets significantly lower than standard configurations. This form of spectrometer design offers the potential for exceptionally compact instrument for differential optical absorption spectroscopy (DOAS applications from LEO, GEO, HAP or ground-based platforms. The breadboard demonstrator has been shown to offer high throughput and a stable Gaussian line shape with a spectral range from 300 to 450 nm at 0.5 nm resolution, suitable for a number of typical DOAS applications.

  3. Assessment of the performance of a compact concentric spectrometer system for Atmospheric Differential Optical Absorption Spectroscopy

    Directory of Open Access Journals (Sweden)

    C. Whyte

    2009-08-01

    Full Text Available A breadboard demonstrator of a novel UV/VIS grating spectrometer for atmospheric research has been developed based upon a concentric arrangement of a spherical meniscus lens, concave spherical mirror and curved diffraction grating suitable for a range of remote sensing applications from the ground or space. The spectrometer is compact and provides high optical efficiency and performance benefits over traditional instruments. The concentric design is capable of handling high relative apertures, owing to spherical aberration and coma being near zero at all surfaces. The design also provides correction for transverse chromatic aberration and distortion, in addition to correcting for the distortion called "smile", the curvature of the slit image formed at each wavelength. These properties render this design capable of superior spectral and spatial performance with size and weight budgets significantly lower than standard configurations. This form of spectrometer design offers the potential for an exceptionally compact instrument for differential optical absorption spectroscopy (DOAS applications particularly from space (LEO, GEO orbits and from HAPs or ground-based platforms. The breadboard demonstrator has been shown to offer high throughput and a stable Gaussian line shape with a spectral range from 300 to 450 nm at better than 0.5 nm resolution, suitable for a number of typical DOAS applications.

  4. Investigation of chromophore-chromophore interaction by electro-optic measurements, linear dichroism, x-ray scattering, and density-functional calculations

    DEFF Research Database (Denmark)

    Apitz, Dirk; Bertram, R.P.; Benter, N.;

    2005-01-01

    Free-beam interferometry and angle-resolved absorption spectra are used to investigate the linear electro-optic coefficients and the linear dichroism in photoaddressable bis-azo copolymer thin films. From the first- and second order parameters deduced, the chromophore orientation distribution is ...

  5. Resonantly Enhanced Multi-Photon Ionization Spectrum of the Neutral Green Fluorescent Protein Chromophore

    OpenAIRE

    greenwood, jason; Miles, Jordan; De Camillis, Simone; Mulholland, Peter; Zhang, Lijuan; Parkes, Michael A.; Hailes, Helen C.; Fielding, Helen H.

    2014-01-01

    The photophysics of the green fluorescent protein is governed by the electronic structure of the chromophore at the heart of its β-barrel protein structure. We present the first two-color, resonance-enhanced, multiphoton ionization spectrum of the isolated neutral chromophore in vacuo with supporting electronic structure calculations. We find the absorption maximum to be 3.65 ± 0.05 eV (340 ± 5 nm), which is blue-shifted by 0.5 eV (55 nm) from the absorption maximum of the protein in its neut...

  6. Mapping tissue chromophore changes in cerebral ischemia: a pilot study

    Science.gov (United States)

    Abookasis, David; Mathews, Marlon S.; Lay, Christopher; Cuccia, David J.; Frostig, Ron D.; Linskey, Mark E.; Tromberg, Bruce J.

    2007-02-01

    We describe the projection of spatially modulated light for quantitatively mapping changes in oxyhemoglobin, deoxyhemoglobin, and oxygen saturation in two pilot studies in the rat barrel cortex during both permanent and temporary cerebral ischemia. The approach is based on the projection of spatial modulation of white light onto the brain. The reflected light is captured on a CCD camera, which is then processed to obtain the concentration and distribution of chromophores over a wide field. Preliminary results confirm a measurable and quantifiable increase in tissue molecular concentration of deoxy-hemoglobin and decrease in hemoglobin oxygen concentration in both experimental settings. Our preliminary data from our pilot studies demonstrate that spatial modulation of light can provide quantitative chromophore mapping of the brain and has a potential role in monitoring the course and severity of cerebral ischemia in cerebrovascular disease patients.

  7. Atomic absorption determination, in metal sulphide concentrates, of the elements that form gaseous hydrides

    International Nuclear Information System (INIS)

    An account is given of the investigational work on the determination of trace amounts of arsenic, antimony, bismuth, germanium, selenium, and tellurium by the technique using hydride generation and atomic-absorption spectrophotometry. The gaseous hydride is generated by reduction with sodium borohydride, and is subsequently swept by a flow of nitrogen into an air-entrained hydrogen-nitrogen flame. The generation equipment used is simple and inexpensive, and can be readily assembled in most laboratories. The optimum parameters were determined for each element. The effects of 31 probable interfering elements were investigated, and it was found that, although the majority did not interfere, severe interference was encountered when copper, nickel, and the noble metals were present. Methods for the elimination of copper and nickel were developed to allow the determination of arsenic, antimony, bismuth, selenium, and tellurium at the lower parts-per-million level in metal sulphide concentrates with an acceptable accuracy and precision. The determination of microgram amounts of germanium was found to be unsatisfactory

  8. Testing and optical modeling of novel concentrating solar receiver geometries to increase light trapping and effective solar absorptance

    Science.gov (United States)

    Yellowhair, Julius; Ho, Clifford K.; Ortega, Jesus D.; Christian, Joshua M.; Andraka, Charles E.

    2015-09-01

    Concentrating solar power receivers are comprised of panels of tubes arranged in a cylindrical or cubical shape on top of a tower. The tubes contain heat-transfer fluid that absorbs energy from the concentrated sunlight incident on the tubes. To increase the solar absorptance, black paint or a solar selective coating is applied to the surface of the tubes. However, these coatings degrade over time and must be reapplied, which reduces the system performance and increases costs. This paper presents an evaluation of novel receiver shapes and geometries that create a light-trapping effect, thereby increasing the effective solar absorptance and efficiency of the solar receiver. Several prototype shapes were fabricated from Inconel 718 and tested in Sandia's solar furnace at an irradiance of ~30 W/cm2. Photographic methods were used to capture the irradiance distribution on the receiver surfaces. The irradiance profiles were compared to results from raytracing models. The effective solar absorptance was also evaluated using the ray-tracing models. Results showed that relative to a flat plate, the new geometries could increase the effective solar absorptance from 86% to 92% for an intrinsic material absorptance of 86%, and from 60% to 73% for an intrinsic material absorptance of 60%.

  9. CO2 absorption/emission and aerodynamic effects of trees on the concentrations in a street canyon in Guangzhou, China

    International Nuclear Information System (INIS)

    In this paper, the effects of trees on CO2 concentrations in a street canyon in Guangzhou, China are examined by Computational Fluid Dynamics (CFD) simulations of the concentration distribution, taking into account both the CO2 absorption/emission and aerodynamic effects of trees. Simulation results show that, under a 2 m/s southerly prevailing wind condition, CO2 absorption by trees will reduce the CO2 concentration by around 2.5% in the daytime and at the same time the trees' resistance will increase the difference of CO2 concentrations in the street and at the inflow by 43%. As the traffic density increases to 50 vehicles/min, the effect of trees on the ambient CO2 concentration will change from positive to negative. At night, trees have a negative effect on the concentration in the street canyon mainly because of their resistance to airflow. When environmental wind changes, the effect of trees will be different. -- Highlights: ► The trees affect CO2 concentrations in a street canyon. ► Both the CO2 absorption and flow resistance of trees are significant factors by day. ► As the emissions of CO2 increase, the effect of trees will become negative. ► At night, trees have a negative effect on CO2 concentration due to the resistance. -- The effects of trees on CO2 concentrations in a street canyon are examined by CFD simulations, taking into account both the CO2 absorption/emission and aerodynamic effects of trees

  10. Effect of acetylation and succinylation on solubility profile, water absorption capacity, oil absorption capacity and emulsifying properties of mucuna bean (Mucuna pruriens) protein concentrate.

    Science.gov (United States)

    Lawal, O S; Adebowale, K O

    2004-04-01

    Mucuna protein concentrate was acylated with succinic and acetic anhydride. The effects of acylation on solubility, water absorption capacity, oil absorption capacity and emulsifying properties were investigated. The pH-dependent solubility profile of unmodified mucuna protein concentrate (U-mpc) showed a decrease in solubility with decrease in pH and resolubilisation at pH values acidic to isoelectric pH (pH 4). Apart from pH 2, both acetylated mucuna protein concentrates (A-mpc) and succinylated mucuna protein concentrate (S-mpc) had improved solubility over the unmodified derivative. Acylation increased the water absorption capacity (WAC) at all levels of ionic strength (0.1-1.0 M). WAC of the protein samples increased with increase in ionic strength up to 0.2 M after which a decline occurred with increase in ionic strength from 0.4-1.0 M. When protein solutions were prepared in salts of various ions, increase in WAC followed the Hofmeister series in the order: NaSCN oil absorption capacity while the lipophilic tendency reduced the following succinylation. Emulsifying capacity increased with increase in concentration up to 2, 4 and 5% w/v for U-mpc, A-mpc and S-mpc, respectively, after which an increase in concentration reduced the emulsifying capacity. Both acetylation and succinylation significantly (P < 0.05) improved the emulsifying capacity at pH 4-10. Initial increase in ionic strength up to 0.4 M for U-mpc and 0.4 M for A-mpc and S-mpc increased the emulsion capacity progressively. Further increase in ionic strength reduced emulsion capacity (EC). Contrary to the effect of various salts on WAC, increase in EC generally follows the series Na2SO4 < NaCl < NaBr < NaI < NaClO4 < NaSCN. At all levels of ionic strength studied, S-mpc had a better emulsifying activity (EA) than both A-mpc and U-mpc. EA and emulsifying stability (ES) were pH-dependent. Maximum EA and ES were recorded at pH 10. ES of protein derivatives were higher than those of U-mpc in the range

  11. Determination of total sulfur concentrations in different types of vinegars using high resolution flame molecular absorption spectrometry.

    Science.gov (United States)

    Ozbek, Nil; Akman, Suleyman

    2016-12-15

    Total sulfur concentrations in vinegars were determined using molecular absorption of carbon monosulfide (CS) determined with a high-resolution continuum source flame atomic absorption spectrometer. The molecular absorption of CS was measured at 258.056nm in an air-acetylene flame. Due to non-spectral interference, as well as the different sensitivities to some sulfur compounds, all sulfur species were oxidized to sulfate using a HNO3 and H2O2 mixture and the analyte addition technique was applied for quantification. The limit of detection (LOD) and limit of quantification (LOQ) were 11.6 and 38.6mgL(-1), respectively. The concentrations of sulfur in various vinegars ranged from ⩽LOD to 163.6mgL(-1). PMID:27451213

  12. Reconstruction of combustion temperature and gas concentration distributions using line-of-sight tunable diode laser absorption spectroscopy

    Science.gov (United States)

    Zhang, Zhirong; Sun, Pengshuai; Pang, Tao; Xia, Hua; Cui, Xiaojuan; Li, Zhe; Han, Luo; Wu, Bian; Wang, Yu; Sigrist, Markus W.; Dong, Fengzhong

    2016-07-01

    Spatial temperature and gas concentration distributions are crucial for combustion studies to characterize the combustion position and to evaluate the combustion regime and the released heat quantity. Optical computer tomography (CT) enables the reconstruction of temperature and gas concentration fields in a flame on the basis of line-of-sight tunable diode laser absorption spectroscopy (LOS-TDLAS). A pair of H2O absorption lines at wavelengths 1395.51 and 1395.69 nm is selected. Temperature and H2O concentration distributions for a flat flame furnace are calculated by superimposing two absorption peaks with a discrete algebraic iterative algorithm and a mathematical fitting algorithm. By comparison, direct absorption spectroscopy measurements agree well with the thermocouple measurements and yield a good correlation. The CT reconstruction data of different air-to-fuel ratio combustion conditions (incomplete combustion and full combustion) and three different types of burners (one, two, and three flat flame furnaces) demonstrate that TDLAS has the potential of short response time and enables real-time temperature and gas concentration distribution measurements for combustion diagnosis.

  13. Reconstruction of combustion temperature and gas concentration distributions using line-of-sight tunable diode laser absorption spectroscopy

    Science.gov (United States)

    Zhang, Zhirong; Sun, Pengshuai; Pang, Tao; Xia, Hua; Cui, Xiaojuan; Li, Zhe; Han, Luo; Wu, Bian; Wang, Yu; Sigrist, Markus W.; Dong, Fengzhong

    2016-07-01

    Spatial temperature and gas concentration distributions are crucial for combustion studies to characterize the combustion position and to evaluate the combustion regime and the released heat quantity. Optical computer tomography (CT) enables the reconstruction of temperature and gas concentration fields in a flame on the basis of line-of-sight tunable diode laser absorption spectroscopy (LOS-TDLAS). A pair of H2O absorption lines at wavelengths 1395.51 and 1395.69 nm is selected. Temperature and H2O concentration distributions for a flat flame furnace are calculated by superimposing two absorption peaks with a discrete algebraic iterative algorithm and a mathematical fitting algorithm. By comparison, direct absorption spectroscopy measurements agree well with the thermocouple measurements and yield a good correlation. The CT reconstruction data of different air-to-fuel ratio combustion conditions (incomplete combustion and full combustion) and three different types of burners (one, two, and three flat flame furnaces) demonstrate that TDLAS has the potential of short response time and enables real-time temperature and gas concentration distribution measurements for combustion diagnosis.

  14. Effect of nondigestible oligosaccharides on large-bowel functions, blood lipid concentrations and glucose absorption in young healthy male subjects

    NARCIS (Netherlands)

    Dokkum, W. van; Wezendonk, B.; Srikumar, T.S.; Heuvel, E.G.H.M. van den

    1999-01-01

    Objective: To study the effect of the intake of 15 g nondigestible oligosaccharides per day on various parameters of large-bowel function, as well as on blood lipid concentrations and glucose absorption in man. Design: Latin square, randomized, double-blind, diet-controlled. Setting: Metabolic resea

  15. Two instruments based on differential optical absorption spectroscopy (DOAS) to measure accurate ammonia concentrations in the atmosphere

    NARCIS (Netherlands)

    Volten, H.; Bergwerff, J.B.; Haaima, M.; Lolkema, D.E.; Berkhout, A.J.C.; Hoff, G.R.; Potma, C.J.M.; Wichink Kruit, R.J.; Pul, van W.A.J.; Swart, D.P.J.

    2012-01-01

    We present two Differential Optical Absorption Spectroscopy (DOAS) instruments built at RIVM: the RIVM DOAS and the miniDOAS. Both instruments provide virtually interference-free measurements of NH3 concentrations in the atmosphere, since they measure over an open path, without suffering from inlet

  16. Performance assessment and signal processing for range-integrated concentration measurement of gas species using supercontinuum absorption spectroscopy.

    Science.gov (United States)

    Dobroc, Alexandre; Cézard, Nicolas

    2012-12-10

    In this paper, we propose signal-processing tools adapted to supercontinuum absorption spectroscopy, in order to predict the precision of gas species concentration estimation. These tools are based on Cramer-Rao bounds computations. A baseline-insensitive concentration estimation algorithm is proposed. These calculations are validated by statistical tests on simulated supercontinuum signals as well as experimental data using a near-infrared supercontinuum laser and a grating spectrometer.

  17. Two instruments based on differential optical absorption spectroscopy (DOAS) to measure accurate ammonia concentrations in the atmosphere

    OpenAIRE

    H. Volten; Bergwerff, J.B.; M. Haaima; Lolkema, D. E.; A. J. C. Berkhout; G. R. van der Hoff; C. J. M. Potma; R. J. Wichink Kruit; W. A. J. van Pul; D. P. J. Swart

    2011-01-01

    We present two Differential Optical Absorption Spectroscopy (DOAS) instruments built at RIVM: the RIVM DOAS and the miniDOAS. Both instruments provide virtually interference-free measurements of NH3 concentrations in the atmosphere, since they measure over an open path, without suffering from inlet problems or interference problems by ammonium aerosols dissociating on tubes or filters. They measure concentrations up to at least 200 μg m−3, have a ...

  18. Modelling LiBr-H2O solution concentration/crystallization of low thermal-powered absorption air conditioning system

    International Nuclear Information System (INIS)

    A computer model is developed to predict the concentration of lithium bromide - water (LiBr-H2O) solution for used in low thermal energy-driven absorption air conditioning plants design. The computer program is capable to alert the users from undesirable solidification or crystallization zones. Good agreements between simulated concentration and experimental data from standard chart/table have been obtained. (Author)

  19. Relationship between concentration and exposed area on absorption and excretion of T-2 mycotoxin through rabbit skin

    International Nuclear Information System (INIS)

    T-2 mycotoxin is a severe skin irritant that can be lethal via the dermal route. A non-occlusive barrier model was developed to study the effects of concentration and size of the exposed area on the absorption rate of toxin in rabbit skin. The skin was shaved and, twenty-four hours later, varying concentrations of both [4H]-labeled and unlabeled T0 toxin in DMSO were painted on the surface. A barrier, consisting of a mesh-jacketed, half-inch foam pad with a hole in the center, was applied to the skin. In order to assess absorption, lethality and excretion were used as endpoints, and dosage, area, and concentration (μ g/cm2) were varied. At doses of 5, 10, and 15 mg/kg of T-2 toxin in DMSO applied to a 200 cm2 area, lethality was 0 of 2, 6 of 11, and 6 of 6 rabbits, respectively. This suggests a direct dose-response relationship. However, at a dose of 10 mg/kg applied in a 100 cm2 area, there were no deaths in 4 rabbits. This indicates a lower rate of absorption at this higher concentration. The percentage of [3H]-toxin excreted was higher at lower doses of T-2 toxin and reduced at higher concentrations. The authors conclude that area, dose, and concentration of applied toxin can influence the amount of T-2 toxin that is absorbed through the skin

  20. Revealing Brown Carbon Chromophores Produced in Reactions of Methylglyoxal with Ammonium Sulfate

    Energy Technology Data Exchange (ETDEWEB)

    Lin, Peng; Laskin, Julia; Nizkorodov, Sergey A.; Laskin, Alexander

    2015-12-15

    Atmospheric brown carbon (BrC) is an important contributor to light absorption and climate forcing by aerosols. Reactions between small water-soluble carbonyls and ammonia or amines have been identified as one of the potential pathways of BrC formation. However, detailed chemical characterization of BrC chromophores has been challenging and their formation mechanisms are still poorly understood. Understanding BrC formation is impeded by the lack of suitable methods which can unravel the variability and complexity of BrC mixtures. This study applies high performance liquid chromatography (HPLC) coupled to photodiode array (PDA) detector and high resolution mass spectrometry (HRMS) to investigate optical properties and chemical composition of individual BrC components produced through reactions of methylglyoxal (MG) and ammonium sulfate (AS), both of which are abundant in the atmospheric environment. A direct relationship between optical properties and chemical composition of 30 major BrC chromophores was established. Nearly all of these chromophores are nitrogen-containing compounds that account for >70% of the overall light absorption by the MG+AS system in the 300-500 nm range. These results suggest that reduced-nitrogen organic compounds formed in reactions between atmospheric carbonyls and ammonia/amines are important BrC chromophores. It is also demonstrated that improved separation of BrC chromophores by HPLC will significantly advance understanding of BrC chemistry.

  1. Photophysics of organometallic platinum(II) derivatives of the diketopyrrolopyrrole chromophore

    KAUST Repository

    Goswami, Subhadip

    2014-12-18

    A pair of diketopyrrolopyrrole (DPP) chromophores that are end-functionalized with platinum containing "auxochromes" were subjected to electrochemical and photophysical study. The chromophores contain either platinum acetylide or ortho-metalated 2-thienylpyridinyl(platinum) end-groups (DPP-Pt(CC) and DPP-Pt(acac), respectively). The ground state redox potentials of the chromophores were determined by solution electrochemistry, and the HOMO and LUMO levels were estimated. The chromophores\\' photophysical properties were characterized by absorption, photoluminescence, and time-resolved absorption spectroscopy on time scales from sub-picoseconds to microseconds. Density functional theory (DFT) computations were performed to understand the molecular orbitals involved in both the singlet and triplet excited state photophysics. The results reveal that in both platinum DPP derivatives the organometallic auxochromes have a significant effect on the chromophores\\' photophysics. The most profound effect is a reduction in the fluorescence yields accompanied by enhanced triplet yields due to spin-orbit coupling induced by the metal centers. The effects are most pronounced in DPP-Pt(acac), indicating that the orthometalated platinum auxochrome is able to induce spin-orbital coupling to a greater extent compared to the platinum acetylide units. (Figure Presented).

  2. Influence of boron concentration on nonlinear absorption and ultrafast dynamics in GaSe crystals

    Science.gov (United States)

    Karatay, Ahmet; Yuksek, Mustafa; Ertap, Hüseyin; Mak, Ali Kemal; Karabulut, Mevlüt; Elmali, Ayhan

    2016-10-01

    The nonlinear absorption properties and ultrafast dynamics of pure and boron doped GaSe crystals have been studied by open aperture Z-scan and ultrafast pump probe spectroscopy techniques. All of the studied crystals showed nonlinear absorption under 100 fs pulse duration and 1200 nm wavelength excitations. Nonlinear absorption coefficients increase with increasing the doping ratio of boron atoms in crystals. These findings indicate that free carrier density increase with boron doping and this behavior leads to excited state absorption. Second harmonic generation signals of crystals were detected with the help of fiber optic spectrometer. The blue shift in the energy of the second harmonic generation signals was observed in boron doped crystals. Ultrafast pump probe experiments indicate that the excited state absorption signal with long lifetime observed for undoped GaSe crystal switches to bleach signal for boron doped GaSe crystals at 625 nm probe wavelength. The effects of increasing doping ratio were observed on ultrafast dynamics as a switching time changes. Our experimental results indicate that it is possible to control nonlinear absorption properties, frequency conversion and ultrafast dynamics of GaSe crystal by changing boron doping ratio.

  3. Influence if acidity and concentration of aqueous uranyl nitrate solutions on the efficiency of uranium absorption by hydrolytic wood lignin

    International Nuclear Information System (INIS)

    Efficiency of uranium(VI) absorption by hydrolytic wood lignin from uranyl nitrate aqueous solutions under static conditions at room temperature, depending on solution acidity and uranium concentration, was studied using the methods of elementary analysis and IR spectroscopy. It was ascertained that hydrolytic lignin manifests a high ability to strong uranium(VI) absorption from low-acid and alkaline solutions. Interaction of uranium(VI) and hydrolytic lignin occurs both according to ion exchange mechanism and at the expense of donor-acceptor bonds formation

  4. Photochemical degradation of chromophoric-dissolved organic matter exposed to simulated UV-B and natural solar radiation

    NARCIS (Netherlands)

    Zhang, Y.; Liu, M.; Qin, B.; Feng, S.

    2009-01-01

    Photochemical degradation of chromophoric-dissolved organic matter (CDOM) by UV-B radiation decreases CDOM absorption in the UV region and fluorescence intensity, and alters CDOM composition. CDOM absorption, fluorescence, and the spectral slope indicating the CDOM composition were studied using 0.2

  5. Removal of high concentration CO2 from natural gas at elevated pressure via absorption process in packed column

    Institute of Scientific and Technical Information of China (English)

    L.S.Tan; K.K.Lau; M.A.Bustam; A.M.Shariff

    2012-01-01

    Carbon dioxide (CO2) removal is an essential step in natural gas (NG) processing to provide high quality gas stream products and minimize operational difficulties.This preliminary study aims to investigate the removal of CO2 at high concentration level from the mixture of CO2-NG gas stream at elevated pressure via absorption process.This is to explore the possibility of exploring high CO2 content natural gas reserves by treatment at offshore platform.A mixed amine solvent,Stonvent-Ⅱ,was used for the absorption of approximately 75 vol% CO2 in CO2-NG stream at a pressure of 10 barg.The initial solvent temperature was varied in order to study the impact of initial temperature on the absorption performance.Preliminary study at temperatures of 35 ℃ and 45 ℃ indicates that Stonvent-Ⅱ was able to perform almost 100% removal of CO2 under both conditions.However,the CO2 absorption effect took place faster when the initial liquid temperature was lower.This is because when the initial liquid temperature is high,the temperature increase in the packing bed caused by the reaction heat is high which impacts the efficiency of absorption negatively.

  6. Towards quantitative tissue absorption imaging by combining photoacoustics and acousto-optics

    CERN Document Server

    Daoudi, Khalid

    2012-01-01

    We propose a strategy for quantitative photoacoustic mapping of chromophore concentrations that can be performed purely experimentally. We exploit the possibility of acousto-optic modulation using focused ultrasound, and the principle that photons follow trajectories through a turbid medium in two directions with equal probability. A theory is presented that expresses the local absorption coefficient inside a medium in terms of noninvasively measured quantities and experimental parameters. Proof of the validity of the theory is given with Monte Carlo simulations.

  7. Investigation of linear optical absorption coefficients in core-shell quantum dot (QD) luminescent solar concentrators (LSCs)

    Science.gov (United States)

    Ebrahimipour, Bahareh Alsadat; Askari, Hassan Ranjbar; Ramezani, Ali Behjat

    2016-09-01

    The interlevel absorption coefficient of CdSe/ZnS and ZnS/CdSe core-shell Quantum Dot (QD) in luminescent solar concentrators (LSCs) is reported. By considering the quantum confinement effects, the wave functions and eigenenergies of electrons in the nonperturebative system consists of a core-shell QD have been numerically calculated under the frame work of effective-mass approximation by solving a three-dimensional Schrӧdinger equation. And then the absorption coefficient is obtained under density matrix approximation considering in the polymer sheets of the concentrator including the core-shell QDs. The effect of the hetero-structure geometry upon the energy spectrum and absorption coefficient associated to interlevel transitions was also considered. The results show that the core-shell QDs can absorb the photons with higher energy in solar spectrum as compared to the inverted core-shell. And with a small shell layer diameter, the core-shell QDs produce larger linear absorption coefficients and consequently higher efficiency values, however it is inversed for inverted core-shell QDs. The work described here gives a detailed insight into the promise of QD-based LSCs and the optoelectronic devices applications.

  8. Does Ca2+ reach millimolar concentrations after single photon absorption in Drosophila photoreceptor microvilli?

    NARCIS (Netherlands)

    Postma, Marten; Oberwinkler, J; Stavenga, DG

    1999-01-01

    The quantum bump, the elementary event of fly phototransduction induced by the absorption of a single photon, is a small, transient current due to the opening of cation-channels permeable to Ca2+. These channels are located in small, tube-like protrusions of the cell membrane, the microvilli. Using

  9. Synthesis and electrocatalytic water oxidation by electrode-bound helical peptide chromophore-catalyst assemblies.

    Science.gov (United States)

    Ryan, Derek M; Coggins, Michael K; Concepcion, Javier J; Ashford, Dennis L; Fang, Zhen; Alibabaei, Leila; Ma, Da; Meyer, Thomas J; Waters, Marcey L

    2014-08-01

    Artificial photosynthesis based on dye-sensitized photoelectrosynthesis cells requires the assembly of a chromophore and catalyst in close proximity on the surface of a transparent, high band gap oxide semiconductor for integrated light absorption and catalysis. While there are a number of approaches to assemble mixtures of chromophores and catalysts on a surface for use in artificial photosynthesis based on dye-sensitized photoelectrosynthesis cells, the synthesis of discrete surface-bound chromophore-catalyst conjugates is a challenging task with few examples to date. Herein, a versatile synthetic approach and electrochemical characterization of a series of oligoproline-based light-harvesting chromophore-water-oxidation catalyst assemblies is described. This approach combines solid-phase peptide synthesis for systematic variation of the backbone, copper(I)-catalyzed azide-alkyne cycloaddition (CuAAC) as an orthogonal approach to install the chromophore, and assembly of the water-oxidation catalyst in the final step. Importantly, the catalyst was found to be incompatible with the conditions both for amide bond formation and for the CuAAC reaction. The modular nature of the synthesis with late-stage assembly of the catalyst allows for systematic variation in the spatial arrangement of light-harvesting chromophore and water-oxidation catalyst and the role of intrastrand distance on chromophore-catalyst assembly properties. Controlled potential electrolysis experiments verified that the surface-bound assemblies function as water-oxidation electrocatalysts, and electrochemical kinetics data demonstrate that the assemblies exhibit greater than 10-fold rate enhancements compared to the homogeneous catalyst alone.

  10. Measurement of chromophores density using high Q-factor silica microspheres

    Science.gov (United States)

    Kandas, Ishac; Shehata, Nader; Daengngam, Chalongrat; Ashry, Islam; Xu, Yong

    2016-01-01

    This work investigates the relationship between the Q factor of a silica microsphere coated with nonlinear optical molecules and the surface density of the nonlinear molecules. Two types of nonlinear molecules are studied: poly{1-[p-(3‧-carboxy-4‧-hydroxyphenylazo) benzenesulfonamido]-1,2-ethandiyl} (PCBS), and Procion Brown MX-GRN (PB). In our experiments, we coat silica microspheres with ionic self-assembled multilayer films with different thicknesses as well as with different PCBS/PB chromophores densities. The Q factors of the coated microspheres are measured to be within the range of 106 to 107, which can be attributed to the optical absorption of the coated chromophores. This work can be used to experimentally determine the effective density of chromophores assembled on the silica microsphere. It may also find applications in chemical/biological sensing.

  11. High-resolution continuum source electrothermal atomic absorption spectrometry: Linearization of the calibration curves within a broad concentration range

    Energy Technology Data Exchange (ETDEWEB)

    Katskov, Dmitri, E-mail: katskovda@tut.ac.za [Tshwane University of Technology, Chemistry Department, Pretoria 0001 (South Africa); Hlongwane, Miranda [Tshwane University of Technology, Chemistry Department, Pretoria 0001 (South Africa); Heitmann, Uwe [German Aerospace Center, Rose-Luxemburg Str. 2, 10178 Berlin (Germany); Florek, Stefan [ISAS-Leibniz-Institut fuer Analytische Wissenschaften e.V., Albert-Einstein-Str. 9,12489 Berlin (Germany)

    2012-05-15

    The calculation algorithm suggested provides linearization of the calibration curves in high-resolution continuum source electrothermal atomic absorption spectrometry. The algorithm is based on the modification of the function wavelength-integrated absorbance vs. concentration of analyte vapor in the absorption volume. According to the suggested approach, the absorption line is represented by a triangle for low and trapezium for high analyte vapor concentration in the absorption volume. The respective semi-empirical formulas include two linearization parameters, which depend on properties of the absorption line and characteristics of the atomizer and spectrometer. The parameters can be approximately evaluated from the theory and determined in practice from the original broad-range calibration curve. The parameters were found and the proposed calculation algorithm verified in the experiments on direct determination of Ag, Cd, Cu, Fe, Mn and Pb in the solutions within a concentration ranges from 0.15 to 625 {mu}g{center_dot}L{sup -1} using tube, platform tube and filter furnace atomizers. The use of various atomizers, lines, elements and atomization temperatures made possible the simulation of various practical analytical conditions. It was found that the algorithm and optimal linearization parameters made it possible to obtain for each line and atomizer linear approximations of the calibration curves within 3-4 orders of magnitude with correlation coefficients close to 0.999. The algorithm makes possible to employ a single line for the direct element determination over a broad concentration range. The sources of errors and the possibility of a priori theoretical evaluation of the linearization parameters are discussed. - Highlights: Black-Right-Pointing-Pointer New calculation algorithm for HR-CS ET AAS measurements was proposed and applied. Black-Right-Pointing-Pointer The suggested formulas include two parameters to be determined experimentally. Black

  12. Mapping chemical concentration in binary thin organic films via multi-wavelength scanning absorption microscopy (MWSAM)

    Science.gov (United States)

    Berriman, Garth; Routley, Ben; Holdsworth, John; Zhou, Xiaojing; Belcher, Warwick; Dastoor, Paul

    2014-09-01

    The composition and thickness of binary thin organic films is determined by measuring the optical absorption at multiple wavelengths across the film surface and performing a component analysis fit to absorption standards for the materials. The multiple laser wavelengths are focused onto the surface using microscope objectives and raster scanned across the film surface using a piezo-electric actuator X-Y stage. All of the wavelengths are scanned simultaneously with a frequency division multiplexing system used to separate the individual wavelength response. The composition values are in good quantitative agreement with measurements obtained by scanning transmission x-ray microscopy (STXM). This new characterization technique extends quantitative compositional mapping of thin films to thickness regimes beyond that accessible by STXM.

  13. The terminal phycobilisome emitter, LCM: A light-harvesting pigment with a phytochrome chromophore.

    Science.gov (United States)

    Tang, Kun; Ding, Wen-Long; Höppner, Astrid; Zhao, Cheng; Zhang, Lun; Hontani, Yusaku; Kennis, John T M; Gärtner, Wolfgang; Scheer, Hugo; Zhou, Ming; Zhao, Kai-Hong

    2015-12-29

    Photosynthesis relies on energy transfer from light-harvesting complexes to reaction centers. Phycobilisomes, the light-harvesting antennas in cyanobacteria and red algae, attach to the membrane via the multidomain core-membrane linker, L(CM). The chromophore domain of L(CM) forms a bottleneck for funneling the harvested energy either productively to reaction centers or, in case of light overload, to quenchers like orange carotenoid protein (OCP) that prevent photodamage. The crystal structure of the solubly modified chromophore domain from Nostoc sp. PCC7120 was resolved at 2.2 Å. Although its protein fold is similar to the protein folds of phycobiliproteins, the phycocyanobilin (PCB) chromophore adopts ZZZssa geometry, which is unknown among phycobiliproteins but characteristic for sensory photoreceptors (phytochromes and cyanobacteriochromes). However, chromophore photoisomerization is inhibited in L(CM) by tight packing. The ZZZssa geometry of the chromophore and π-π stacking with a neighboring Trp account for the functionally relevant extreme spectral red shift of L(CM). Exciton coupling is excluded by the large distance between two PCBs in a homodimer and by preservation of the spectral features in monomers. The structure also indicates a distinct flexibility that could be involved in quenching. The conclusions from the crystal structure are supported by femtosecond transient absorption spectra in solution.

  14. Cooperative TPA enhancement via through-space interactions in organic nanodots built from dipolar chromophores

    Science.gov (United States)

    Robin, Anne-Claire; Parthasarathy, Venkatakrishnan; Pla-Quintana, Anna; Mongin, Olivier; Terenziani, Francesca; Caminade, Anne-Marie; Majoral, Jean-Pierre; Blanchard-Desce, Mireille

    2010-08-01

    Whereas structure-properties relationships have been widely investigated at the molecular level, supramolecular structure-property relationships have been somewhat overlooked. In many cases, interchromophoric interactions are found to be detrimental (in particular in second-order NLO) and a lot of efforts have been devoted to circumvent and control these effects to achieve efficient NLO materials for electrooptics. At opposite, we have implemented a countermainstream route based on the confinement of push-pull chromophores in close proximity within organic nanodots where both their number and relative position/distance are controlled by covalent attachment onto appropriate organic scaffolds. In such multichromophoric organic superstructures (namely covalent nanoclusters), dipole-dipole interactions can be tuned by playing on the internal architecture (topology, number of chromophoric subunits, length of the covalent linkers) and on the nature and properties (polarity, polarizability) of the chromophoric subunits. Following this strategy, we present the investigation of two series of such organic nanoclusters built from push-pull chromophores where through-space interactions are shown to modify both one-photon (OPA) and two-photon absorption (TPA) of each chromophoric subunits leading to cooperative enhancement of TPA properties and improved transparency.

  15. The terminal phycobilisome emitter, LCM: A light-harvesting pigment with a phytochrome chromophore.

    Science.gov (United States)

    Tang, Kun; Ding, Wen-Long; Höppner, Astrid; Zhao, Cheng; Zhang, Lun; Hontani, Yusaku; Kennis, John T M; Gärtner, Wolfgang; Scheer, Hugo; Zhou, Ming; Zhao, Kai-Hong

    2015-12-29

    Photosynthesis relies on energy transfer from light-harvesting complexes to reaction centers. Phycobilisomes, the light-harvesting antennas in cyanobacteria and red algae, attach to the membrane via the multidomain core-membrane linker, L(CM). The chromophore domain of L(CM) forms a bottleneck for funneling the harvested energy either productively to reaction centers or, in case of light overload, to quenchers like orange carotenoid protein (OCP) that prevent photodamage. The crystal structure of the solubly modified chromophore domain from Nostoc sp. PCC7120 was resolved at 2.2 Å. Although its protein fold is similar to the protein folds of phycobiliproteins, the phycocyanobilin (PCB) chromophore adopts ZZZssa geometry, which is unknown among phycobiliproteins but characteristic for sensory photoreceptors (phytochromes and cyanobacteriochromes). However, chromophore photoisomerization is inhibited in L(CM) by tight packing. The ZZZssa geometry of the chromophore and π-π stacking with a neighboring Trp account for the functionally relevant extreme spectral red shift of L(CM). Exciton coupling is excluded by the large distance between two PCBs in a homodimer and by preservation of the spectral features in monomers. The structure also indicates a distinct flexibility that could be involved in quenching. The conclusions from the crystal structure are supported by femtosecond transient absorption spectra in solution. PMID:26669441

  16. [Ammonia gas concentration and velocity measurement using tunable diode laser absorption spectroscopy and optical signal cross-correlation method].

    Science.gov (United States)

    Zhang, Chun-Xiao; Wang, Fei; Li, Ning; Yan, Jian-Hua; Chi, Yong; Cen, Ke-Fa

    2009-10-01

    Simultaneous online measurement of gas concentration and velocity can be realized by tunable diode laser absorption spectroscopy (TDLAS) technique and optical signal cross-correlation method. The fundamental and relative factors of gas concentration and velocity measurement are described in the present paper. The spectral lines of NH3 used for gas sensing at communication band in near infrared range were selected and analyzed by the calculation based on the HITRAN database. In the verification experiment, NH3 and N2 were mixed by two mass flow meters and sent to flow through the quartz tube 0. 016 m in inner diameter and 1 m in length at normal temperature and pressure. The spectral line located at 6,548.7 cm(-1) was scanned at high frequency by the diode laser of 15 MHz linewidth and 1 cm' tunable range with no mode hoppings. The instantaneous NH3 absorbance was obtained using direct absorption method and the gas concentration was calculated. At the same time, the non-intrusive optical absorption signal cross-correlation method was utilized to obtain two concentration signals from two adjacent detectors mounted along the gas tube. The corresponding transit time of gas passing through the detectors was calculated by cross-correlation algorithm, and the average gas velocity was inferred according to the distance between the two detectors and the transit time. The relative errors were less than 7% for the gas concentration measurement, and less than 10% for the gas velocity measurement. Experimental results were proved to be of high precision and good repeatability in the lab. The feature of fast response and capacity immune to the in situ disturbance would lead to a potential in industry application for the real time measurement and control of gas pollutant emission in the future. PMID:20038016

  17. In Situ Measurements of Aerosol Mass Concentration and Spectral Absorption at Three Location in and Around Mexico City

    Science.gov (United States)

    Chaudhry, Z.; Martins, V.; Li, Z.

    2006-12-01

    As a result of population growth and increasing industrialization, air pollution in heavily populated urban areas is one of the central environmental problems of the century. As a part of the MILAGRO (Megacity Initiative: Local and Global Research Observations) study, Nuclepore filters were collected in two size ranges (PM10 and PM2.5) at 12 hour intervals at three location in Mexico during March, 2006. Sampling stations were located at the Instituto Mexicano del Petroleo (T0), at the Rancho La Bisnago in the State of Hidalgo (T2) and along the Gulf Coast in Tampico (Tam). Each filter was analyzed for mass concentration, aerosol scattering and absorption efficiencies. Mass concentrations at T0 ranged from 47 to 179 μg/m3 for PM10 with an average concentration of 96 μg/m3, and from 20 to 93 μg/m3 for PM2.5 with an average concentration of 41 μg/m3. Mass concentrations at T2 ranged from 12 to 154 μg/m3 for PM10 with an average concentration of 51 μg/m3, and from 7 to 50 μg/m3 for PM2.5 with an average concentration of 25 μg/m3. Mass concentrations at Tam ranged from 34 to 80 μg/m3 for PM10 with an average concentration of 52 μg/m3, and from 8 to 23 μg/m3 for PM2.5 with an average concentration of 13 μg/m3. While some of the extreme values are likely linked to local emissions, regional air pollution episodes also played important roles. Each of the sampling stations experienced a unique atmospheric condition. The site at T0 was influenced by urban air pollution and dust storms, the site at T2 was significantly less affected by air pollution but more affected by regional dust storms and local dust devils while Tam was influenced by air pollution, dust storms and the natural marine environment. The spectral mass absorption efficiency was measured from 350 to 2500 nm and shows large differences between the absorption properties of soil dust, black carbon, and organic aerosols. The strong spectral differences observed can be related to differences in

  18. Propene concentration sensing for combustion gases using quantum-cascade laser absorption near 11 μm

    KAUST Repository

    Chrystie, Robin

    2015-05-29

    We report on a strategy to measure, in situ, the concentration of propene (C3H6) in combustion gases using laser absorption spectroscopy. Pyrolysis of n-butane was conducted in a shock tube, in which the resultant gases were probed using an extended cavity quantum-cascade laser. A differential absorption approach using online and offline wavelengths near λ = 10.9 μm enabled discrimination of propene, cancelling the effects of spectral interference from the simultaneous presence of intermediate hydrocarbon species during combustion. Such interference-free measurements were facilitated by exploiting the =C–H bending mode characteristic to alkenes (olefins). It was confirmed, for intermediate species present during pyrolysis of n-butane, that their absorption cross sections were the same magnitude for both online and offline wavelengths. Hence, this allowed time profiles of propene concentration to be measured during pyrolysis of n-butane in a shock tube. Time profiles of propene subsequent to a passing shock wave exhibit trends similar to that predicted by the well-established JetSurF 1.0 chemical kinetic mechanism, albeit lower by a factor of two. Such a laser diagnostic is a first step to experimentally determining propene in real time with sufficient time resolution, thus aiding the refinement and development of chemical kinetic models for combustion. © 2015 Springer-Verlag Berlin Heidelberg

  19. A measurement plan of gas concentration and temperature distribution reconstruction based on the tunable diode laser absorption tomography

    Science.gov (United States)

    Liu, Zhao-ran; Jin, Xing; Wang, Guang-yu; Song, Jun-ling

    2014-11-01

    Based on the tunable diode laser absorption tomography, gas concentration and temperature two-dimensional distribution reconstruction is realized using algebraic iterative reconstruction technique (ART). A measurement plan is proposed based on the beam splitting lens, and the corresponding beam arrangement is put forward. The beam splitting lenses are used in the plan to making one laser beam cross the measurement area repeatedly. Thus can raise the utilization ratio of laser beam and simplify the structure of measurement platform. A model for H2O vapor concentration and temperature distribution is assumed, and numerical simulation is utilized using two absorption transitions. The feasibility of the measurement plan is proved by the simulation experiment. The influences of initial beam angle, the number of beams and grids on the reconstructed results are analyzed numerically. A concept of phantom description method using in simulation experiments is proposed in order to getting closer to the real experiments. The phantom description method is used in the numerical simulation to evaluating concentration and temperature field reconstruction. Through this method, expected data is sampled from initial data, and reconstructed result is obtained by interpolation. The influence of random errors in projections on distribution reconstruction is also analyzed. The measurement plan can reconstruct the gas concentration and temperature distribution with a simplified measurement platform using beam splitting lenses. The feasibility of the phantom description method is also proved by the simulation experiment.

  20. Tackling self-absorption in Luminescent Solar Concentrators with type-II colloidal quantum dots

    NARCIS (Netherlands)

    Krumer, Z.; Pera, S.J.; Dijk-Moes, R.J.A. van; Zhao, Y.; Brouwer, A.F.P. de; Groeneveld, E.; Sark, W.G.J.H.M. van; Schropp, R.E.I.; Mello-Donega, C. de

    2013-01-01

    Luminescent solar concentrators are low cost photovoltaic devices, which reduce the amount of necessary semiconductor material per unit area of a solar collector by means of concentration. The device is comprised a thin plastic plate in which luminescent species (fluorophores) have been incorporated

  1. Dissolved organic carbon and chromophoric dissolved organic matter properties of rivers in the USA

    Science.gov (United States)

    Spencer, Robert G.M.; Butler, Kenna D.; Aiken, George R.

    2012-01-01

    Dissolved organic carbon (DOC) concentration and chromophoric dissolved organic matter (CDOM) parameters were measured over a range of discharge in 30 U.S. rivers, covering a diverse assortment of fluvial ecosystems in terms of watershed size and landscape drained. Relationships between CDOM absorption at a range of wavelengths (a254, a350, a440) and DOC in the 30 watersheds were found to correlate strongly and positively for the majority of U.S. rivers. However, four rivers (Colorado, Colombia, Rio Grande and St. Lawrence) exhibited statistically weak relationships between CDOM absorption and DOC. These four rivers are atypical, as they either drain from the Great Lakes or experience significant impoundment of water within their watersheds, and they exhibited values for dissolved organic matter (DOM) parameters indicative of autochthonous or anthropogenic sources or photochemically degraded allochthonous DOM and thus a decoupling between CDOM and DOC. CDOM quality parameters in the 30 rivers were found to be strongly correlated to DOM compositional metrics derived via XAD fractionation, highlighting the potential for examining DOM biochemical quality from CDOM measurements. This study establishes the ability to derive DOC concentration from CDOM absorption for the majority of U.S. rivers, describes characteristics of riverine systems where such an approach is not valid, and emphasizes the possibility of examining DOM composition and thus biogeochemical function via CDOM parameters. Therefore, the usefulness of CDOM measurements, both laboratory-based analyses and in situ instrumentation, for improving spatial and temporal resolution of DOC fluxes and DOM dynamics in future studies is considerable in a range of biogeochemical studies.

  2. Dissolved organic carbon and chromophoric dissolved organic matter properties of rivers in the USA

    Science.gov (United States)

    Spencer, Robert G. M.; Butler, Kenna D.; Aiken, George R.

    2012-09-01

    Dissolved organic carbon (DOC) concentration and chromophoric dissolved organic matter (CDOM) parameters were measured over a range of discharge in 30 U.S. rivers, covering a diverse assortment of fluvial ecosystems in terms of watershed size and landscape drained. Relationships between CDOM absorption at a range of wavelengths (a254, a350, a440) and DOC in the 30 watersheds were found to correlate strongly and positively for the majority of U.S. rivers. However, four rivers (Colorado, Colombia, Rio Grande and St. Lawrence) exhibited statistically weak relationships between CDOM absorption and DOC. These four rivers are atypical, as they either drain from the Great Lakes or experience significant impoundment of water within their watersheds, and they exhibited values for dissolved organic matter (DOM) parameters indicative of autochthonous or anthropogenic sources or photochemically degraded allochthonous DOM and thus a decoupling between CDOM and DOC. CDOM quality parameters in the 30 rivers were found to be strongly correlated to DOM compositional metrics derived via XAD fractionation, highlighting the potential for examining DOM biochemical quality from CDOM measurements. This study establishes the ability to derive DOC concentration from CDOM absorption for the majority of U.S. rivers, describes characteristics of riverine systems where such an approach is not valid, and emphasizes the possibility of examining DOM composition and thus biogeochemical function via CDOM parameters. Therefore, the usefulness of CDOM measurements, both laboratory-based analyses and in situ instrumentation, for improving spatial and temporal resolution of DOC fluxes and DOM dynamics in future studies is considerable in a range of biogeochemical studies.

  3. A method for segregating the optical absorption properties and the mass concentration of winter time urban aerosol

    Science.gov (United States)

    Ajtai, T.; Utry, N.; Pintér, M.; Major, B.; Bozóki, Z.; Szabó, G.

    2015-12-01

    A novel in-situ, real time method for the determination of inherent absorption properties of light absorbing carbonaceous particulate matter and its possible application for source apportionment are introduced here. The method is deduced from a two-week campaign under wintry urban conditions during which strong correlation was found between aerosol number size distribution and wavelength dependent optical absorption coefficient (AOC(λ)), measured by a Single Mobility Particle Sizer (SMPS) and a multi-wavelength photoacoustic absorption spectrometer, respectively, while wood burning and traffic (i.e. fossil fuel burning) activity were identified to be the dominant sources of carbonaceous particulate. Indeed, during the whole campaign, regardless of the actual emission strength of the aerosol sources, the measured number size distributions were always dominated by two unimodal modes with Count Mean Diameter (CMD) of 20 and 100 nm, which could be correlated to traffic and wood burning activities, respectively. AAEff, AAEwb (i.e. the Aerosol Angström Exponent of traffic and wood burning aerosol, respectively), σff(266 nm), σff(1064 nm), σwb(266 nm) and σff(1064 nm) (i.e. the segregated mass specific optical absorption coefficients at two of the measurement wavelengths) were found to be 1.17 ± 0.18, 2.6 ± 0.14, 7.3 ± 0.3 m2g-1, 1.7 ± 0.1 m2g-1 3.4 ± 0.3 m2g-1 and 0.31 ± 0.08 m2g-1, respectively. Furthermore the introduced methodology can also disentangle and quantify the temporal variation of both the segregated optical absorptions and the segregated mass concentrations of traffic and wood burning aerosol. Accordingly, the contribution of wood burning to optical absorption of PM was found to be negligible at 1064 nm but increased gradually towards the shorter wavelengths and became commensurable with the optical absorption of traffic at 266 nm during the whole measurement period. Furthermore, the contribution of wood burning mass to CM (mass of carbonaceous

  4. Fluorescence measured in situ as a proxy of CDOM absorption and DOC concentration in the Baltic Sea

    Directory of Open Access Journals (Sweden)

    Piotr Kowalczuk

    2010-09-01

    Full Text Available This study presents results from field surveys performed in 2008 and 2009 in the southern Baltic in different seasons. The main goal of these measurements was to identify the empirical relationships between DOM optical properties and DOC. CDOM absorption and fluorescence and DOC concentrations were measured during thirteen research cruises. The values of the CDOM absorption coefficient at 370 nm aCDOM(370 ranged from 0.70 m-1 to 7.94 m-1, and CDOM fluorescence intensities (ex./em. 370/460 IFl, expressed in quinine sulphate equivalent units, ranged from 3.88 to 122.97 (in filtered samples. Dissolved organic carbon (DOC concentrations ranged from 266.7 to 831.7 µM C. There was a statistically significant linear relationship between the fluorescence intensity measured in the filtered samples and the CDOM absorption coefficient aCDOM(370, R2 = 0.87. There was much more scatter in the relationship between the fluorescence intensity measured in situ (i.e. in unprocessed water samples and the CDOM absorption coefficient aCDOM(370, resulting in a slight deterioration in the coefficient of determination R2 = 0.85. This indicated that the presence of particles could impact fluorometer output during in situ deployment. A calibration experiment was set up to quantify particle impact on the instrument output in raw marine water samples relative to readings from filtered samples. The bias calculated for the absolute percentage difference between fluorescence intensities measured in raw and filtered water was low (-2.05%, but the effect of particle presence expressed as the value of the RMSE was significant and was as high as 35%. Both DOM fluorescence intensity (in raw water and filtered samples and the CDOM absorption coefficient aCDOM(370 are highly correlated with DOC concentration. The relationship between DOC and the CDOM absorption coefficient aCDOM(370 was better (R2 = 0.76 than the relationship between DOC and the respective fluorescence intensities

  5. Detection Limit of Glucose Concentration with Near-Infrared Absorption and Scattering Spectroscopy

    Institute of Scientific and Technical Information of China (English)

    LUO Yun-Han; HUANG Fu-Rong; LI Shi-Ping; CHEN Zhe

    2008-01-01

    @@ Theoretical analyses and Monte Carlo simulation are performed to investigate the detection limit of glucose concentration with near-infrared spectroscopy.The relation between detection limitation of glucose concentration and source-detector separation is derived.Monte Carlo simulation performed with a skin-layered model shows that the ratio of effective photons from the target layer could excess 50% by selecting proper source-detector separation,and that the detection limit of glucose concentration approaches to 0.28mM,which satisfies the requirement of food and drug administration for noninvasive glucose sensing.

  6. Phytoplankton size class derived from phytoplankton absorption and chlorophyll-a concentrations in the northern South China Sea

    Institute of Scientific and Technical Information of China (English)

    WANG Guoqing; CAO Wenxi; WANG Guifen; ZHOU Wen

    2013-01-01

    A previously developed model was modified to derive three phytoplankton size classes (micro-,nano-,and pico-phytoplankton) from the overall chlorophyll-a concentration,assuming that each class has a specific absorption coefficient.The modified model performed well using in-situ data from the northern South China Sea,and the results were reliable and accurate.The relative errors of the size-fractioned chlorophyll-a concentration for each size class were:micro-:21%,nano-:41%,pico-:26%,and nano+pico:23%.The model was then applied on ocean color remote sensing data to examine the distribution and variation of phytoplankton size classes in northern South China Sea on a large scale.

  7. Absolute OH concentration profiles measurements in high pressure counterflow flames by coupling LIF, PLIF, and absorption techniques

    Science.gov (United States)

    Matynia, A.; Idir, M.; Molet, J.; Roche, C.; de Persis, S.; Pillier, L.

    2012-08-01

    A high-pressure combustion chamber enclosing counterflow burners was set-up at ICARE-CNRS laboratory. It allows the stabilization of flat twin premixed flames at atmospheric and high pressure. In this study, lean and stoichiometric methane/air counterflow premixed flames were studied at various pressures (0.1 MPa to 0.7 MPa). Relative OH concentration profiles were measured by Laser Induced Fluorescence. Great care was attached to the determination of the fluorescence signal by taking into account the line broadening and deexcitation by quenching which both arise at high pressure. Subsequently, OH profiles were calibrated in concentration by laser absorption technique associated with planar laser induced fluorescence. Results are successfully compared with literature. The good quality of the results attests of the experimental set-up ability to allow the study of flame structure at high pressure.

  8. Figures of merit of nonlinear optical chromophores in photorefractive polymers

    Science.gov (United States)

    Barzoukas, Marguerite; Blanchard-Desce, Mireille H.; Wortmann, Ruediger W.

    1999-05-01

    A pre-requisite to obtain polymers with a large photorefractive response is to design non-linear optical chromophores with a large figure of merit. This figure depends on the glass transition temperature of the material. We present a theoretical investigation that shows which are the important molecular parameters that control the magnitude of the figure of merit either in a low-Tg or in a high-Tg polymer. Derivation of the figures of merit for various push-pull molecules show a molecular engineering strategy can be successfully implemented to yield very large figures of merit. This approach is supported by an experimental investigation based on electro-optical absorption measurements.

  9. Novel multi-chromophor light absorber concepts for DSSCs for efficient electron injection

    Energy Technology Data Exchange (ETDEWEB)

    Schuetz, Robert; Strothkaemper, Christian; Bartelt, Andreas; Hannappel, Thomas; Eichberger, Rainer [Helmholtz-Zentrum Berlin fuer Materialien und Energie, Hahn-Meitner-Platz 1, 14109 Berlin (Germany); Fasting, Carlo [Institut fuer Organische Chemie, Freie Universitaet Berlin, Takustrasse 3, 14195 Berlin (Germany); Thomas, Inara [Helmholtz-Zentrum Berlin fuer Materialien und Energie, Hahn-Meitner-Platz 1, 14109 Berlin (Germany); Institut fuer Organische Chemie, Freie Universitaet Berlin, Takustrasse 3, 14195 Berlin (Germany)

    2011-07-01

    Dye sensitized solar cells (DSSCs) operate by injecting electrons from the excited state of a light-harvesting dye into the continuum of conduction band states of a wide bandgap semiconductor. The light harvesting efficiency of pure organic dyes is limited by a narrow spectral electronic transition. A beneficial broad ground state absorption in the VIS region can be achieved by applying a single molecular dye system with multiple chromophors involving a Foerster resonance energy transfer (FRET) mechanism for an efficient electron injection. A model donor acceptor dye system capable for FRET chemically linked to colloidal TiO{sub 2} and ZnO nanorod surfaces was investigated in UHV environment. We used VIS/NIR femtosecond transient absorption spectroscopy and optical pump terahertz probe spectroscopy to study the charge injection dynamics of the antenna system. Different chromophors attached to a novel scaffold/anchor system connecting the organic absorber unit to the metal oxide semiconductor were probed.

  10. Influence of environmental factors on spectral characteristics of chromophoric dissolved organic matter (CDOM) in Inner Mongolia Plateau, China

    Science.gov (United States)

    Wen, Z. D.; Song, K. S.; Zhao, Y.; Du, J.; Ma, J. H.

    2016-02-01

    Spectral characteristics of chromophoric dissolved organic matter (CDOM) were examined in conjunction with environmental factors in the waters of rivers and terminal lakes within the Hulun Buir plateau, northeast China. Dissolved organic carbon (DOC), total nitrogen (TN), and total phosphorous (TP) were significantly higher in terminal lakes than rivers waters (p RDA) indicated that the environmental variables total suspended matter (TSM), TN, and electrical conductivity (EC) had a strong correlation with light absorption characteristics, followed by total dissolved solid (TDS) and chlorophyll a. In most sampling locations, CDOM was the dominant non-water light-absorbing substance. Light absorption by non-algal particles often exceeded that by phytoplankton in the plateau waters. Study of these optical-physicochemical correlations is helpful in the evaluation of the potential influence of water quality factors on non-water light absorption in cold plateau water environments. The construction of a correlation between DOC concentration and water quality factors may help contribute to regional estimates of carbon sources and fate for catchment carbon budget assessments.

  11. A Possibly Universal Red Chromophore for Jupiter

    Science.gov (United States)

    Sromovsky, Lawrence A.; Baines, Kevin; Fry, Patrick M.

    2016-10-01

    A new laboratory-generated chemical compound made from photodissociated ammonia (NH3) molecules reacting with acetylene (C2H2) was suggested as a possible coloring agent for Jupiter's Great Red Spot (GRS) by Carlson et al. (2016, Icarus 274, 106-115). Baines et al. (2016, AAS/DPS Meeting abstract) showed that the GRS spectrum measured by the visual channels of the Cassini VIMS instrument in 2000 could be accurately fit by a cloud model in which the chromophore appeared as small particles in a physically thin layer immediately above the main cloud layer of the GRS. Here we show that the same chromophore and similar layer structure can also provide close matches to the 0.4-1 micron spectra of many other cloud features on Jupiter, suggesting that this material may be a nearly universal chromophore responsible for the various degrees of red coloration on Jupiter. This is a robust conclusion, even for 12 percent changes in VIMS calibration and large uncertainties in the refractive index of the main cloud layer due to uncertain fractions of NH4SH and NH3 in its cloud particles. The chromophore layer can account for color variations among north and south equatorial belts, equatorial zone, and the Great Red Spot, by varying particle size from 0.12 to 0.29 micron and optical depth from 0.06 to 0.76. The total mass of the chromophore layer is much less variable than its optical depth, staying mainly within 6-10 micrograms/cm2 range, but is only about half that amount in the equatorial zone. We also found a depression of the ammonia volume mixing ratio in the two belt regions, which averaged 0.4-0.5 × 10-4 immediately below the ammonia condensation level, while the other regions averaged twice that value.LAS and PMF acknowledge support from NASA Grant NNX14AH40G.

  12. Layer-by-layer deposited organic/inorganic hybrid multilayer films containing noncentrosymmetrically orientated azobenzene chromophores.

    Science.gov (United States)

    Kang, En-Hua; Bu, Tianjia; Jin, Pengcheng; Sun, Junqi; Yang, Yanqiang; Shen, Jiacong

    2007-07-01

    Organic/inorganic hybrid multilayer films with noncentrosymmetrically orientated azobenzene chromophores were fabricated by the sequential deposition of ZrO2 layers by a surface sol-gel process and subsequent layer-by-layer (LbL) adsorption of the nonlinear optical (NLO)-active azobenzene-containing polyanion PAC-azoBNS and poly(diallyldimethylammonium chloride) (PDDA). Noncentrosymmetric orientation of the NLO-active azobenzene chromophores was achieved because of the strong repulsion between the negatively charged ZrO(2) and the sulfonate groups of the azobenzene chromophore in PAC-azoBNS. Regular deposition of ZrO(2)/PAC-azoBNS/PDDA multilayer films was verified by UV-vis absorption spectroscopy and quartz crystal microbalance measurements. Both UV-vis absorption spectroscopy and transmission second harmonic generation (SHG) measurements confirmed the noncentrosymmetric orientation of the azobenzene chromophores in the as-prepared ZrO2/PAC-azoBNS/PDDA multilayer films. The square root of the SHG signal (I(2omega)(1/2)) increases with the increase of the azobenzene graft ratio in PAC-azoBNS as the number of deposition cycles of the ZrO(2)/PAC-azoBNS/PDDA films remains the same, while the second-order susceptibility chi(zzz)(2) of the film decreases with the increase of the azobenzene graft ratio. Furthermore, the present method was successfully extended to realize the noncentrosymmetric orientation of azobenzene chromophores in multilayer films when small organic azobenzene compounds with carboxylic acid and/or hydroxyl groups at one end and sulfonate groups at the other end were used. The present method was characterized by its simplicity and flexibility in film preparation, and it is anticipated to be a facile way to fabricate second-order nonlinear optical film materials. PMID:17555337

  13. Triplet excited state properties in variable gap π-conjugated donor–acceptor–donor chromophores

    KAUST Repository

    Cekli, Seda

    2016-02-12

    A series of variable band-gap donor–acceptor–donor (DAD) chromophores capped with platinum(II) acetylide units has been synthesized and fully characterized by electrochemical and photophysical methods, with particular emphasis placed on probing triplet excited state properties. A counter-intuitive trend of increasing fluorescence quantum efficiency and lifetime with decreasing excited state energy (optical gap) is observed across the series of DAD chromophores. Careful study of the excited state dynamics, including triplet yields (as inferred from singlet oxygen sensitization), reveals that the underlying origin of the unusual trend in the fluorescence parameters is that the singlet–triplet intersystem crossing rate and yield decrease with decreasing optical gap. It is concluded that the rate of intersystem crossing decreases as the LUMO is increasingly localized on the acceptor unit in the DAD chromophore, and this result is interpreted as arising because the extent of spin–orbit coupling induced by the platinum heavy metal centers decreases as the LUMO is more localized on the acceptor. In addition to the trend in intersystem crossing, the results show that the triplet decay rates follow the Energy Gap Law correlation over a 1.8 eV range of triplet energy and 1000-fold range of triplet decay rates. Finally, femtosecond transient absorption studies for the DAD chromophores reveals a strong absorption in the near-infrared region which is attributed to the singlet excited state. This spectral band appears to be general for DAD chromophores, and may be a signature of the charge transfer (CT) singlet excited state.

  14. Dynamics of chromophoric dissolved organic matter in Mandovi and Zuari estuaries — A study through in situ and satellite data

    Digital Repository Service at National Institute of Oceanography (India)

    Menon, H.B.; Sangekar, N.P.; Lotliker, A.A.; Vethamony, P.

    The spatial and temporal distribution of absorption of chromophoric dissolved organic matter at 440 nm (a sub (CDOM) (440)) in the Mandovi and Zuari estuaries situated along the west coast of India, has been analysed. The study was carried out using...

  15. Synthesis and near-infrared characteristics of novel perylene bisimide dyes bay-functionalized with naphthalimide chromophores

    Institute of Scientific and Technical Information of China (English)

    Bo Gao; Yang Li; He Tian

    2007-01-01

    Novel perylene bisimide dyes bay-functionalized with naphthalimide chromophores have been prepared conveniently by coupling of 1,8-naphthalimide and dibromoperylene bisimides. Their optical properties were investigated by UV-vis and fluorescence spectroscopy. The absorption spectra of these compounds showed wide spectral responses from 300 to 700 nm,which would be potentials for application as organic solar cells.

  16. Evolution of dissolved and particulate chromophoric materials during the VAHINE mesocosm experiment in the New Caledonian coral lagoon (south-west Pacific)

    Science.gov (United States)

    Tedetti, Marc; Marie, Lauriane; Röttgers, Rüdiger; Rodier, Martine; Van Wambeke, France; Helias, Sandra; Caffin, Mathieu; Cornet-Barthaux, Véronique; Dupouy, Cécile

    2016-06-01

    In the framework of the VAHINE project, we investigated the spectral characteristics and the variability of dissolved and particulate chromophoric materials throughout a 23-day mesocosm experiment conducted in the south-west Pacific at the mouth of the New Caledonian coral lagoon (22°29.073 S-166°26.905 E) from 13 January to 4 February 2013. Samples were collected in a mesocosm fertilized with phosphate at depths of 1, 6 and 12 m and in the surrounding waters. Light absorption coefficients of chromophoric dissolved organic matter (CDOM) [ag(λ)] and particulate matter [ap(λ)] were determined using a point-source integrating-cavity absorption meter (PSICAM), while fluorescent DOM (FDOM) components were determined from excitation-emission matrices (EEMs) combined with parallel factor analysis (PARAFAC). The evolutions of ag(λ) and ap(λ) in the mesocosm were similar to those of total chlorophyll a concentration, Synechococcus spp. and picoeukaryote abundances, bacterial production, particulate organic nitrogen and total organic carbon concentrations, with roughly a decrease from the beginning of the experiment to days 9-10, and an increase from days 9-10 to the end of the experiment. In the surrounding waters, the same trend was observed but the increase was much less pronounced, emphasizing the effect of the phosphate fertilization on the mesocosm's plankton community. Correlations suggested that both Synechococcus cyanobacteria and heterotrophic bacteria were strongly involved in the production of CDOM and absorption of particulate matter. The increase in phytoplankton biomass during the second part of the experiment led to a higher contribution of particulate material in the absorption budget at 442 nm. The three FDOM components identified (tryptophan-, tyrosine- and ultraviolet C (UVC) humic-like fluorophores) did not follow the evolution of CDOM and particulate matter, suggesting they were driven by different production/degradation processes. Finally, the

  17. Evolution of dissolved and particulate chromophoric materials during the VAHINE mesocosm experiment in the New Caledonian coral lagoon (South West Pacific

    Directory of Open Access Journals (Sweden)

    M. Tedetti

    2015-10-01

    Full Text Available In the framework of the VAHINE project, we investigated the spectral characteristics and the variability of dissolved and particulate chromophoric materials throughout a 23 day mesocosm experiment conducted in the South West Pacific at the exit of the New Caledonian coral lagoon (22°29.073 S–166°26.905 E from 13 January to 4 February 2013. Samples were collected in a mesocosm fertilized with phosphorus at 1, 6 and 12 m depth and in the surrounding waters. Light absorption coefficients of chromophoric dissolved organic matter (CDOM (ag(λ, particulate matter (ap(λ and CDOM + particulate matter (ag+p(λ were measured using a point-source integrating-cavity absorption meter (PSICAM, while fluorescent DOM (FDOM components were determined from excitation-emission matrices (EEMs combined with parallel factor analysis (PARAFAC. The evolutions of ag(λ, ap(λ and ag+p(λ in the mesocosm were similar to those of total chlorophyll a concentration, Synechococcus spp. and picoeukaryote abundances, bacterial production, particulate organic nitrogen and total organic carbon concentrations, with roughly a decrease from the beginning of the experiment to days 9–10, and an increase from days 9–10 to the end of the experiment. In the surrounding waters, the same trend was observed but the increase was much less pronounced, emphasizing the effect of the phosphorus fertilization on the mesocosm's plankton community. Correlations suggested that both Synechococcus cyanobacteria and heterotrophic bacteria were strongly involved in the production of CDOM and absorption of particulate matter. The increase in phytoplankton activities during the second part of the experiment led to a higher contribution of particulate material in the absorption budget at 442 nm. The three FDOM components identified (tryptophan-, tyrosine- and UVC humic-like fluorophores did not follow the evolution of CDOM and particulate matter, proving that these were driven by different

  18. Analysis of algebraic reconstruction technique for accurate imaging of gas temperature and concentration based on tunable diode laser absorption spectroscopy

    Science.gov (United States)

    Hui-Hui, Xia; Rui-Feng, Kan; Jian-Guo, Liu; Zhen-Yu, Xu; Ya-Bai, He

    2016-06-01

    An improved algebraic reconstruction technique (ART) combined with tunable diode laser absorption spectroscopy(TDLAS) is presented in this paper for determining two-dimensional (2D) distribution of H2O concentration and temperature in a simulated combustion flame. This work aims to simulate the reconstruction of spectroscopic measurements by a multi-view parallel-beam scanning geometry and analyze the effects of projection rays on reconstruction accuracy. It finally proves that reconstruction quality dramatically increases with the number of projection rays increasing until more than 180 for 20 × 20 grid, and after that point, the number of projection rays has little influence on reconstruction accuracy. It is clear that the temperature reconstruction results are more accurate than the water vapor concentration obtained by the traditional concentration calculation method. In the present study an innovative way to reduce the error of concentration reconstruction and improve the reconstruction quality greatly is also proposed, and the capability of this new method is evaluated by using appropriate assessment parameters. By using this new approach, not only the concentration reconstruction accuracy is greatly improved, but also a suitable parallel-beam arrangement is put forward for high reconstruction accuracy and simplicity of experimental validation. Finally, a bimodal structure of the combustion region is assumed to demonstrate the robustness and universality of the proposed method. Numerical investigation indicates that the proposed TDLAS tomographic algorithm is capable of detecting accurate temperature and concentration profiles. This feasible formula for reconstruction research is expected to resolve several key issues in practical combustion devices. Project supported by the Young Scientists Fund of the National Natural Science Foundation of China (Grant No. 61205151), the National Key Scientific Instrument and Equipment Development Project of China (Grant

  19. Analysis of algebraic reconstruction technique for accurate imaging of gas temperature and concentration based on tunable diode laser absorption spectroscopy

    Science.gov (United States)

    Hui-Hui, Xia; Rui-Feng, Kan; Jian-Guo, Liu; Zhen-Yu, Xu; Ya-Bai, He

    2016-06-01

    An improved algebraic reconstruction technique (ART) combined with tunable diode laser absorption spectroscopy(TDLAS) is presented in this paper for determining two-dimensional (2D) distribution of H2O concentration and temperature in a simulated combustion flame. This work aims to simulate the reconstruction of spectroscopic measurements by a multi-view parallel-beam scanning geometry and analyze the effects of projection rays on reconstruction accuracy. It finally proves that reconstruction quality dramatically increases with the number of projection rays increasing until more than 180 for 20 × 20 grid, and after that point, the number of projection rays has little influence on reconstruction accuracy. It is clear that the temperature reconstruction results are more accurate than the water vapor concentration obtained by the traditional concentration calculation method. In the present study an innovative way to reduce the error of concentration reconstruction and improve the reconstruction quality greatly is also proposed, and the capability of this new method is evaluated by using appropriate assessment parameters. By using this new approach, not only the concentration reconstruction accuracy is greatly improved, but also a suitable parallel-beam arrangement is put forward for high reconstruction accuracy and simplicity of experimental validation. Finally, a bimodal structure of the combustion region is assumed to demonstrate the robustness and universality of the proposed method. Numerical investigation indicates that the proposed TDLAS tomographic algorithm is capable of detecting accurate temperature and concentration profiles. This feasible formula for reconstruction research is expected to resolve several key issues in practical combustion devices. Project supported by the Young Scientists Fund of the National Natural Science Foundation of China (Grant No. 61205151), the National Key Scientific Instrument and Equipment Development Project of China (Grant

  20. Naturally occurring proteinaceous nanoparticles in Coptidis Rhizoma extract act as concentration-dependent carriers that facilitate berberine absorption.

    Science.gov (United States)

    Ma, Bing-Liang; Yin, Chun; Zhang, Bo-Kai; Dai, Yan; Jia, Yi-Qun; Yang, Yan; Li, Qiao; Shi, Rong; Wang, Tian-Ming; Wu, Jia-Sheng; Li, Yuan-Yuan; Lin, Ge; Ma, Yue-Ming

    2016-01-29

    Pharmacological activities of some natural products diminish and even disappear after purification. In this study, we explored the mechanisms underlying the decrease of acute oral toxicity of Coptidis Rhizoma extract after purification. The water solubility, in vitro absorption, and plasma exposure of berberine (the major active compound) in the Coptidis Rhizoma extract were much better than those of pure berberine. Scanning electron microscopy, laser scanning confocal microscopy (LSCM), and dynamic light scattering experiments confirmed that nanoparticles attached to very fine precipitates existed in the aqueous extract solution. The LSCM experiment showed that the precipitates were absorbed with the particles by the mouse intestine. High-speed centrifugation of the extract could not remove the nanoparticles and did not influence plasma exposure or acute oral toxicity. However, after extract dilution, the attached precipitates vanished, although the nanoparticles were preserved, and there were no differences in the acute oral toxicity and plasma exposure between the extract and pure berberine. The nanoparticles were then purified and identified as proteinaceous. Furthermore, they could absorb co-dissolved berberine. Our results indicate that naturally occurring proteinaceous nanoparticles in Coptidis Rhizoma extract act as concentration-dependent carriers that facilitate berberine absorption. These findings should inspire related studies in other natural products.

  1. Involvement of Concentrative Nucleoside Transporter 1 in Intestinal Absorption of Trifluridine Using Human Small Intestinal Epithelial Cells.

    Science.gov (United States)

    Takahashi, Koichi; Yoshisue, Kunihiro; Chiba, Masato; Nakanishi, Takeo; Tamai, Ikumi

    2015-09-01

    TAS-102, which is effective for refractory metastatic colorectal cancer, is a combination drug of anticancer trifluridine (FTD; which is derived from pyrimidine nucleoside) and FTD-metabolizing enzyme inhibitor tipiracil hydrochloride (TPI) at a molecular ratio of 1:0.5. To evaluate the intestinal absorption mechanism of FTD, the uptake and transcellular transport of FTD by human small intestinal epithelial cell (HIEC) monolayer as a model of human intestinal epithelial cells was investigated. The uptake and membrane permeability of FTD by HIEC monolayers were saturable, Na(+) -dependent, and inhibited by nucleosides. These transport characteristics are mostly comparable with those of concentrative nucleoside transporters (CNTs). Moreover, the uptake of FTD by CNT1-expressing Xenopus oocytes was the highest among human CNT transporters. The obtained Km and Vmax values of FTD by CNT1 were 69.0 μM and 516 pmol/oocyte/30 min, respectively. The transcellular transport of FTD by Caco-2 cells, where CNT1 is heterologously expressed, from apical to basolateral side was greater than that by Mock cells. In conclusion, these results demonstrated that FTD exhibits high oral absorption by the contribution of human CNT1.

  2. Correction for a measurement artifact of the Multi-Angle Absorption Photometer (MAAP at high black carbon mass concentration levels

    Directory of Open Access Journals (Sweden)

    A.-P. Hyvärinen

    2013-01-01

    Full Text Available The Multi-Angle Absorption Photometer (MAAP is a widely-used instrument for aerosol black carbon (BC measurements. In this paper, we show correction methods for an artifact found to affect the instrument accuracy in environments characterized by high black carbon concentrations. The artifact occurs after a filter spot change – as BC mass is accumulated on a fresh filter spot, the attenuation of the light (raw signal is weaker than anticipated. This causes a sudden decrease, followed by a gradual increase in measured BC concentration. The artifact is present in the data when the BC concentration exceeds ~3 μg m−3 at the typical MAAP flow rate of 16.7 L min−1 or 1 m3 h−1. The artifact is caused by erroneous dark counts in the photodetector measuring the transmitted light, in combination with an instrument internal averaging procedure of the photodetector raw signals. It was found that, in addition to the erroneous temporal response of the data, concentrations higher than 9 μg m−3 (at the flow rate of 16.7 L min−1 are underestimated by the MAAP. The underestimation increases with increasing BC accumulation rate. At a flow rate of 16.7 L min−1 and concentration of about 24 μg m−3 (BC accumulation rate ~0.4 μg min−1, the underestimation is about 30%. There are two ways of overcoming the MAAP artifact. One method is by logging the raw signal of the 165° photomultiplier measuring the reflected light from the filter spot. As this signal is not affected by the artifact, it can be converted to approximately correct absorption and BC values. However, as the typical print formats of the MAAP do not give the reflected signal as an output, a semi-empirical correction method was developed based on laboratory experiments to correct for the results in the post-processing phase. The correction function was applied to three MAAP datasets from

  3. Correction for a measurement artifact of the Multi-Angle Absorption Photometer (MAAP) at high black carbon mass concentration levels

    Science.gov (United States)

    Hyvärinen, A.-P.; Vakkari, V.; Laakso, L.; Hooda, R. K.; Sharma, V. P.; Panwar, T. S.; Beukes, J. P.; van Zyl, P. G.; Josipovic, M.; Garland, R. M.; Andreae, M. O.; Pöschl, U.; Petzold, A.

    2013-01-01

    The Multi-Angle Absorption Photometer (MAAP) is a widely-used instrument for aerosol black carbon (BC) measurements. In this paper, we show correction methods for an artifact found to affect the instrument accuracy in environments characterized by high black carbon concentrations. The artifact occurs after a filter spot change - as BC mass is accumulated on a fresh filter spot, the attenuation of the light (raw signal) is weaker than anticipated. This causes a sudden decrease, followed by a gradual increase in measured BC concentration. The artifact is present in the data when the BC concentration exceeds ~3 μg m-3 at the typical MAAP flow rate of 16.7 L min-1 or 1 m3 h-1. The artifact is caused by erroneous dark counts in the photodetector measuring the transmitted light, in combination with an instrument internal averaging procedure of the photodetector raw signals. It was found that, in addition to the erroneous temporal response of the data, concentrations higher than 9 μg m-3 (at the flow rate of 16.7 L min-1) are underestimated by the MAAP. The underestimation increases with increasing BC accumulation rate. At a flow rate of 16.7 L min-1 and concentration of about 24 μg m-3 (BC accumulation rate ~0.4 μg min-1), the underestimation is about 30%. There are two ways of overcoming the MAAP artifact. One method is by logging the raw signal of the 165° photomultiplier measuring the reflected light from the filter spot. As this signal is not affected by the artifact, it can be converted to approximately correct absorption and BC values. However, as the typical print formats of the MAAP do not give the reflected signal as an output, a semi-empirical correction method was developed based on laboratory experiments to correct for the results in the post-processing phase. The correction function was applied to three MAAP datasets from Gual Pahari (India), Beijing (China), and Welgegund (South Africa). In Beijing, the results could also be compared against a

  4. Correction for a measurement artifact of the Multi-Angle Absorption Photometer (MAAP at high black carbon mass concentration levels

    Directory of Open Access Journals (Sweden)

    A.-P. Hyvärinen

    2012-09-01

    Full Text Available The Multi-Angle Absorption Photometer (MAAP is a widely-used instrument for aerosol black carbon observations. In this paper, we show correction methods for an artifact found to affect the instrument accuracy in environments with high black carbon concentrations. The artifact occurs after a filter spot change – as BC mass is accumulated on a fresh filter spot, the attenuation of the light (raw signal is weaker than anticipated. This causes a sudden decrease, followed by a gradual increase in measured BC concentration. The artifact is present in the data when the BC concentration exceeds ∼3 μg m−3 at the typical MAAP flow rate of 16.7 l min−1 or 1 m3 h−1. The artifact is caused by erroneous dark counts in the photo detector measuring the transmitted light, in combination with an instrument internal averaging procedure of the photo detector raw signals. It was found that in addition to the erroneous temporal response of the data, concentrations higher than 9 μg m−3 (at the flow rate of 16.7 l min−1 are underestimated by the MAAP. The underestimation increases with increasing BC accumulation rate. At a flow rate of 16.7 l min−1 and concentration of about 24 μg m−3 (BC accumulation rate ∼0.4 μg min−1, the underestimation is about 30%. There are two ways of overcoming the MAAP artifact. One method is by logging the raw signal of the 165° photomultiplier measuring the reflected light from the filter spot. As this signal is not affected by the artifact, it can be converted to approximately correct absorption and BC values. However, as the typical print formats of the MAAP do not give the reflected signal as an output, a semi-empirical correction method was developed based on laboratory experiments to correct for the results in the post-processing phase. The correction function was applied to three MAAP datasets from Gual Pahari

  5. Pre-concentration of trace metals from sea-water for determination by graphite-furnace atomic-absorption spectrometry.

    Science.gov (United States)

    Sturgeon, R E; Berman, S S; Desaulniers, A; Russell, D S

    1980-02-01

    Determination of Cd, Zn, Pb, Cu, Fe, Mn, Co, Cr and Ni in coastal sea-water by graphite-furnace atomic-absorption spectrometry after preconcentration by solvent extraction and use of a chelating ion-exchange resin is described. Following the extraction of the pyrrolidine-N-carbodithioate and oxinate complexes into methyl isobutyl ketone, the trace metals are further preconcentrated by back-extraction into 1.5M nitric acid. Preconcentration on the chelating resin is effected by a combined column and batch technique, allowing greater preconcentration factors to be obtained. Provided samples are appropriately treated to release non-labile metal species prior to preconcentration, both methods yield comparable analytical results with respect to the mean concentrations determined as well as to mean relative standard deviations. Control and treatment of the analytical blank is also described. PMID:18962623

  6. Absorption and fluorescence spectra of C60 fullerene concentrated solutions in hexane and polystyrene at 77-300 K

    International Nuclear Information System (INIS)

    The locations of the 000-bands for S1 #60 solutions in hexane. It is shown that the profile of the S1 #00-band in the forbidden 11T1g #1Ag transition is explained by symmetry reduction in the C60+environment system due to the interaction of electrons with local phonons. The temperature coefficients of the red shift for the 256,3- and 328,3-nm bands of allowed 1T1u #1Ag transitions for C60 in hexane are equal to -1.45 and -0.46 cm-1@K-1, respectively. The peak and half-width values of the 337,2-nm band for C60 in polystyrene remain unchanged on cooling to 77 K. Absorption in the 700-800-nm region for concentrated hexane solutions of fullerene at 292 K results from the production of (C60)n-clusters. (authors)

  7. A Synthesis of Light Absorption Properties of the Arctic Ocean: Application to Semi-analytical Estimates of Dissolved Organic Carbon Concentrations from Space

    Science.gov (United States)

    Matsuoka, A.; Babin, M.; Doxaran, D.; Hooker, S. B.; Mitchell, B. G.; Belanger, S.; Bricaud, A.

    2014-01-01

    The light absorption coefficients of particulate and dissolved materials are the main factors determining the light propagation of the visible part of the spectrum and are, thus, important for developing ocean color algorithms. While these absorption properties have recently been documented by a few studies for the Arctic Ocean [e.g., Matsuoka et al., 2007, 2011; Ben Mustapha et al., 2012], the datasets used in the literature were sparse and individually insufficient to draw a general view of the basin-wide spatial and temporal variations in absorption. To achieve such a task, we built a large absorption database at the pan-Arctic scale by pooling the majority of published datasets and merging new datasets. Our results showed that the total non-water absorption coefficients measured in the Eastern Arctic Ocean (EAO; Siberian side) are significantly higher 74 than in the Western Arctic Ocean (WAO; North American side). This higher absorption is explained 75 by higher concentration of colored dissolved organic matter (CDOM) in watersheds on the Siberian 76 side, which contains a large amount of dissolved organic carbon (DOC) compared to waters off 77 North America. In contrast, the relationship between the phytoplankton absorption (a()) and chlorophyll a (chl a) concentration in the EAO was not significantly different from that in the WAO. Because our semi-analytical CDOM absorption algorithm is based on chl a-specific a() values [Matsuoka et al., 2013], this result indirectly suggests that CDOM absorption can be appropriately erived not only for the WAO but also for the EAO using ocean color data. Derived CDOM absorption values were reasonable compared to in situ measurements. By combining this algorithm with empirical DOC versus CDOM relationships, a semi-analytical algorithm for estimating DOC concentrations for coastal waters at the Pan-Arctic scale is presented and applied to satellite ocean color data.

  8. Lead and cadmium in human teeth from Jordan by atomic absorption spectrometry: Some factors influencing their concentrations

    International Nuclear Information System (INIS)

    The aim of this study was to measure the concentrations of lead (Pb) and cadmium (Cd) in human teeth and to investigate the affecting factors. Teeth samples (n = 268) were collected from people living in different cities in Jordan including Amman, Zarqa, Al-Mafraq and Irbid and analyzed for Pb and Cd using atomic absorption spectrometry (AAS). A questionnaire was used to gather information on each person, such as age, sex, place where the patient lives, smoking, presence of amalgam fillings inside the mouth, and whether the patient uses toothpaste or not. The mean concentrations of Pb and Cd were 28.91 μg/g and 0.44 μg/g, respectively. The results indicate that there is a clear relation between Pb and Cd concentrations and the presence of amalgam fillings, smoking, and place of living. Pb was sex-dependent, whereas Cd was not. Our results show that Pb and Cd concentrations in samples obtained from Al-Mafraq and Irbid are higher than those obtained from Amman and Zarqa. Pb was highest in Mafraq, whereas Cd was highest in Irbid. The Pb and Cd concentrations in teeth from smokers (means: Pb = 31.89 μg/g, Cd = 0.49 μg/g) were significantly higher than those from nonsmokers (means: Pb = 24.07 μg/g, Cd = 0.37 μg/g). Pb and Cd concentrations in teeth of patients with amalgam fillings (means: Pb = 31.02 μg/g and Cd = 0.52 μg/g) were significantly higher than those from patients without amalgam fillings (means: Pb = 26.87 μg/g and Cd = 0.41 μg/g). Our results show that brushing the teeth daily with toothpaste does not significantly decrease the concentration of both Pb and Cd. The mean concentrations of Pb and Cd do not vary significantly between the ages 20-30, 31-40, and 41-50, but both increased rapidly at age 51-60

  9. Excitation Emission Matrix Spectra (EEMS) of Chromophoric Dissolved Organic Matter Produced during Microbial Incubation

    Science.gov (United States)

    McDonald, N.; Nelson, N. B.; Parsons, R.

    2013-12-01

    The chromophoric or light-absorbing fraction of dissolved organic matter (CDOM) is present ubiquitously in natural waters and has a significant impact on ocean biogeochemistry, affecting photosynthesis and primary production as well direct and indirect photochemical reactions (Siegel et al., 2002; Nelson et al., 2007). It has been largely researched in the past few decades, however the exact chemical composition remains unknown. Instrumental methods of analysis including simultaneous excitation-emission fluorescence spectra have allowed for further insight into source and chemical composition. While certain excitation-emission peaks have been associated with ';marine' sources, they have not been exclusively linked to bacterial production of CDOM (Coble, 1996; Zepp et al., 2004). In this study, ';grazer diluted' seawater samples (70% 0.2μm filtered water; 30% whole water) were collected at the Bermuda Atlantic Time Series (BATS) site in the Sargasso Sea (31° 41' N; 64° 10' W) and incubated with an amendment of labile dissolved organic carbon (10μM C6H12O6), ammonium (1μM NH4Cl) and phosphate (0.1μM K2HPO4) to facilitate bacterial production. These substrates and concentrations have been previously shown to facilitate optimum bacterial and CDOM production (Nelson et al., 2004). Sample depths were chosen at 1m and 200m as water at these depths has been exposed to UV light (the Subtropical Mode Water at 200m has been subducted from the surface) and therefore has low initial concentrations of CDOM. After the samples were amended, they were incubated at in-situ temperatures in the dark for 72 hours, with bacteria counts, UV-Vis absorption and EEMS measurements taken at 6-8 hour intervals. Dissolved organic carbon (DOC) measurements were collected daily. For the surface water experiment specific bacteria populations were investigated using Fluorescence In-Situ Hybridization (FISH) analysis. Results showed a clear production of bacteria and production of CDOM, which

  10. High Nonlinear Optic Activity Chromophore- Design and Synthesis

    Institute of Scientific and Technical Information of China (English)

    He Mingqian; Thomas M. Leslie

    2004-01-01

    Chromophores are the center piece of second order nonlinear optical (NLO) materials.The common chromophore consists of a Donor-Bridge-Acceptor structure. Donors and acceptors are connected by a bridge and together they make a fully conjugated system. Based on our previously synthesized novelacceptors [1], we have synthesized a large number of high electro-optic chromophores. In this paper, we report four general types of chromophore that were.synthesized during the last few years in our laboratory. Due to The general nature of our chromophore's structure it is best described as:In these structures, R2 and R3 are different groups or a spiro ring junction. Since they are connected to the chromophore with an SP3 hybridized carbon at the furan ring, they are both out of the plane of the conjugated chromophore system. This unique design greatly increases the chromophore's solubility and processability. We believe this design also prevents the highly dipolar,flat chromophores from achieving - stacking resulting on easier poling and a higher EO coefficient.Our poling results proved our hypothesis with a world record 70 pm/V EO coefficient has been obtained at 1550nm in this class of chromophores.

  11. Absorption kinetics of two highly concentrated preparations of growth hormone: 12 IU/ml compared to 56 IU/ml

    DEFF Research Database (Denmark)

    Laursen, Torben; Susgaard, Søren; Jensen, Flemming Steen;

    1994-01-01

    AbstractSend to: Pharmacol Toxicol. 1994 Jan;74(1):54-7. Absorption kinetics of two highly concentrated preparations of growth hormone: 12 IU/ml compared to 56 IU/ml. Laursen T1, Susgaard S, Jensen FS, Jørgensen JO, Christiansen JS. Author information Abstract The purpose of this study...... was to compare the relative bioavailability of two highly concentrated (12 IU/ml versus 56 IU/ml) formulations of biosynthetic human growth hormone administered subcutaneously. After pretreatment with growth hormone for at least four weeks, nine growth hormone deficient patients with a mean age of 26.2 years...... (range 17-43) were studied two times in a randomized design, the two studies being separated by at least one week. At the start of each study period (7 p.m.), growth hormone was injected subcutaneously in a dosage of 3 IU/m2. The 12 IU/ml preparation of growth hormone was administered on one occasion...

  12. EPOXY-BASED AZO POLYMERS WITH HIGH CHROMOPHORE DENSITY:SYNTHESIS, CHARACTERIZATION AND PHOTOINDUCED BIREFRINGENCE

    Institute of Scientific and Technical Information of China (English)

    Xiao-lin Wang; Xiao-gong Wang

    2012-01-01

    Three epoxy-based azo polymers (PEP-AZ-C1,PEP-AZ-CN and PEP-AZ-NT) with high chromophore density were synthesized by using post-polymerization azo-coupling reactions between epoxy-bascd precursor polymer (PEP-AN)and diazonium salts of 4-chloroaniline,4-aminobenzonitrile and 4-nitroaniline,respectively.The structures and properties of the azo polymers were characterized by using 1H-NMR,FT-IR,UV-Vis and thermal analyses.The photoinduced birefringence of the azo polymers was studied by irradiating spin-coated films of the polymers with laser beam at three different wavelengths (488,532,and 589 nm).The results indicate that the photoinduced birefringence of the azo polymers is related with the electron-withdrawing group on azo chromophores and the excitation wavelength.The excitation wavelength that can cause the efficient responses is determined by the absorption band positions of the azo chromophores,which are mainly affected by the electron-withdrawing group on the chromophores.Therefore,the azo polymers containing chromophores with different electron-withdrawing groups show different responsive behavior to the irradiation light at different wavelengths.When irradiated with 488 nm light,PEP-AZ-Cl shows the shortest time to reach the saturated birefringence but with the lowest saturation birefringence level compared with the other two azo polymers.When irradiated with 532 nm light,PEP-AZ-CN shows the shortest time to reach the saturated birefringence.When irradiated with 532 and 589 nm light,PEP-AZ-NT shows the highest saturation birefringence level.

  13. Effects of extracellular iron concentration on calcium absorption and relationship between Ca2+ and cell apoptosis in Caco-2 cells

    Institute of Scientific and Technical Information of China (English)

    Li Wang; Qing Li; Xiang-Lin Duan; Yan-Zhong Chang

    2005-01-01

    AIM: To determine the method of growing small intestinal epithelial cells in short-term primary culture and to investigate the effect of extracellular iron concentration ([Fe3+]) on calcium absorption and the relationship between the rising intracellular calcium concentration ([Ca2+]i) and cell apoptosis in human intestinal epithelial Caco-2 cells. METHODS: Primary culture was used for growing small intestinal epithelial cells. [Ca2+]i was detected by a confocal laser scanning microscope. The changes in [Ca2+]i were represented by fluorescence intensity (FI). The apoptosis was evaluated by flow cytometry.RESULTS: Isolation of epithelial cells and preservation of its three-dimensional integrity were achieved using the digestion technique of a mixture of collagenase Ⅺ and dispase Ⅰ. Purification of the epithelial cells was facilitated by using a simple differential sedimentation method. The results showed that proliferation of normal gut epithelium in vitro was initially dependent upon the maintenance of structural integrity of the tissue. If 0.25% trypsin was used for digestion, the cells were severely damaged and very difficult to stick to the Petri dish for growing. The Fe3+ chelating agent desferrioxamine (100, 200 and 300 μmol/L) increased the FI of Caco-2 cells from 27.50±13.18 (control,n = 150) to 35.71±13.99 (n = 150, P<0.01), 72.19±35.40 (n = 150, P<0.01) and 211.34±29.03 (n = 150, P<0.01) in a concentration-dependent manner. There was a significant decrease in the FI of Caco-2 cells treated by ferric ammonium citrate (FAC, a Fe3+ donor; 10, 50 and 100 μmol/L). The FIvalue of Caco-2 cells treated by FAC was 185.85±33.77 (n = 150, P<0.01), 122.73±58.47 (n = 150, P<0.01), and 53.29±19.82 (n = 150, P<0.01), respectively, suggesting that calcium absorption was influenced by [Fe3+]. Calcium ionophore A23187 (0.1, 1.0 and 10 μmol/L) increased the FI of Caco-2 cells from 40.45±13.95 (control, n = 150) to 45.19±21.95 (n = 150, P<0

  14. Investigation of the chromophore binding cavity in the 11-cis acceptable microbial rhodopsin MR

    Science.gov (United States)

    Mori, Arisa; Yagasaki, Jin; Homma, Michio; Reissig, Louisa; Sudo, Yuki

    2013-06-01

    Rhodopsins are photoactive molecules functioning as photo-energy or photo-signal converters with the chromophore retinal. Recently we characterized a unique microbial rhodopsin (middle rhodopsin, MR) which can also bind 11-cis retinal besides all-trans and 13-cis retinal at a particular ratio. In this study, we investigated the structural characteristics around the retinal binding cavity in MR. The results suggest that the space of the retinal binding site of MR is less restricted to the retinal chromophore and the presence of the 11-cis conformer is regulated by the residues located around the retinal. Furthermore, although the triple mutant of MR has identical residues with the well-studied microbial rhodopsin bacteriorhodopsin (BR) within 5 Å from the retinal, the absorption maximum and retinal composition of MR did not reach those of BR, indicating that some long-range effect(s) (>5 Å) is also important for the maintenance of the chemical properties of MR.

  15. How far can a single hydrogen bond tune the spectral properties of the GFP chromophore?

    DEFF Research Database (Denmark)

    Kiefer, Hjalte; Lattouf, Elie; Persen, Natascha Wardinghus;

    2015-01-01

    Photoabsorption of the hydrogen-bonded complex of a neutral and an anionic Green Fluorescent Protein chromophore has been studied using a new dual-detection approach to action-absorption spectroscopy. Following absorption of one photon, dissociation through a single channel ensures that the full...... absorption spectrum is measured. Our theoretical account of the spectral shape reveals that the anionic 0–0 transition (464 nm) is blue-shifted compared to that of the wild-type protein (478 nm) due to the stronger H-bond in the dimer, and represents an upper bound for that of the isolated anion. At the same...... time, the apparent effect of the H-bond for the neutral chromophore is as large as 0.5 eV, red-shifting the absorption maximum of the isolated neutral (340 nm) to that measured in the dimer (393 nm) and various proteins ([similar]395 nm). This shift results from changes in the topography of potential...

  16. Sources and transformations of dissolved lignin phenols and chromophoric dissolved organic matter in Otsuchi Bay, Japan

    Directory of Open Access Journals (Sweden)

    Chia-Jung eLu

    2016-06-01

    Full Text Available Dissolved lignin phenols and optical properties of dissolved organic matter (DOM were measured to investigate the sources and transformations of terrigenous DOM (tDOM in Otsuchi Bay, Japan. Three rivers discharge into the bay, and relatively high values of syringyl:vanillyl phenols (0.73 ± 0.07 and cinnamyl:vanillyl phenols (0.33 ± 0.10 indicated large contributions of non-woody angiosperm tissues to lignin and tDOM. The physical mixing of river and seawater played an important role in controlling the concentrations and distributions of lignin phenols and chromophoric DOM (CDOM optical properties in the bay. Lignin phenol concentrations and the CDOM absorption coefficient at 350 nm, a(350, were strongly correlated in river and bay waters. Measurements of lignin phenols and CDOM in bay waters indicated a variety of photochemical and biological transformations of tDOM, including oxidation reactions, photobleaching and a decrease in molecular weight. Photodegradation and biodegradation of lignin and CDOM were investigated in decomposition experiments with river water and native microbial assemblages exposed to natural sunlight or kept in the dark. There was a rapid and substantial removal of lignin phenols and CDOM during the first few days in the light treatment, indicating transformations of tDOM and CDOM can occur soon after discharge of buoyant river water into the bay. The removal of lignin phenols was slightly greater in the dark (34% than in the light (30% during the remaining 59 days of the incubation. Comparison of the light and dark treatments indicated biodegradation was responsible for 67% of total lignin phenol removal during the 62-day incubation exposed to natural sunlight, indicating biodegradation is a dominant removal process in Otsuchi Bay.

  17. Quantitative measurement of hydroxyl radical (OH) concentration in premixed flat flame by combining laser-induced fluorescence and direct absorption spectroscopy

    Science.gov (United States)

    Chen, Shuang; Su, Tie; Li, Zhong-Shan; Bai, Han-Chen; Yan, Bo; Yang, Fu-Rong

    2016-10-01

    An accurate and reasonable technique combining direct absorption spectroscopy and laser-induced fluorescence (LIF) methods is developed to quantitatively measure the concentrations of hydroxyl in CH4/air flat laminar flame. In our approach, particular attention is paid to the linear laser-induced fluorescence and absorption processes, and experimental details as well. Through measuring the temperature, LIF signal distribution and integrated absorption, spatially absolute OH concentrations profiles are successfully resolved. These experimental results are then compared with the numerical simulation. It is proved that the good quality of the results implies that this method is suitable for calibrating the OH-PLIF measurement in a practical combustor. Project supported by the National Natural Science Foundation of China (Grant No. 11272338), the Science and Technology on Scramjet Key Laboratory Funding, China (Grant No. STSKFKT 2013004), and the China Scholarship Council.

  18. Concentration distribution of Nd{sup 3+} In Nd:Gd{sub 3}Ga{sub 5}O{sub 12} crystals studied by optical absorption method

    Energy Technology Data Exchange (ETDEWEB)

    Sun, Dunlu; Zhang, Qingli; Wang, Zhaobing; Su, Jing; Gu, Changjiang; Wang, Aihua; Yin, Shaotang [Anhui Institute of Optics and Fine Mechanics, Chinese Academy of Sciences, HeFei 230031 (China)

    2005-07-01

    Nd:Gd{sub 3}Ga{sub 5}O{sub 12} crystals with different concentrations of Nd{sup 3+} were grown by Czochralski method, their absorption spectra were measured at room temperature. By using the optical absorption method, the effective distribution coefficient k{sub eff} for Nd{sup 3+} in GGG was fitted to be 0.40{+-}0.01, which is higher than that of Nd{sup 3+} in YAG. The 808nm absorption cross-section was calculated to be 4.0{+-}0.2 x 10{sup -20} cm{sup -2}. The lengthways and radial concentration distribution of Nd{sup 3+} in the crystals were also analyzed and discussed. (copyright 2005 WILEY-VCH Verlag GmbH and Co. KGaA, Weinheim) (orig.)

  19. Measurement of uranium concentration by molecular absorption spectrophotometry by means optical fibers; Medicion continua de concentracion de uranio por espectrofotometria de absorcion molecular mediante fibras opticas

    Energy Technology Data Exchange (ETDEWEB)

    Gauna, Alberto C.; Pascale, Ariel A. [Comision Nacional de Energia Atomica, Buenos Aires (Argentina). Centro Atomico Ezeiza. Agencia Minipost

    1996-07-01

    An on-line method for measuring the concentration of uranium in uranyl nitrate-nitric acid aqueous solutions is described. The method is based on molecular absorption spectrophotometry with transmission of light by means of optical fibers. It is ideally suited for control and processes development applications. (author)

  20. Effect of pH, buffer concentration and buffer composition on the absorption of theophylline from the small intestine of the rat

    NARCIS (Netherlands)

    Blaey, C.J. de; Schurgers, N.

    1984-01-01

    The absorption of theophylline from the small intestine of the rat was investigated using buffer solutions of different pH (3.0–9.2), composition and concentration. The technique used, encloses luminal perfusion of an intestinal loop with collection of the blood draining the perfused loop, which ena

  1. Linear and nonlinear optical absorption coefficients in GaAs/Ga{sub 1-x}Al{sub x}As concentric double quantum rings: Effects of hydrostatic pressure and aluminum concentration

    Energy Technology Data Exchange (ETDEWEB)

    Baghramyan, H.M. [Department of Solid State Physics, Yerevan State University, Al. Manookian 1, 0025 Yerevan (Armenia); Barseghyan, M.G., E-mail: mbarsegh@ysu.am [Department of Solid State Physics, Yerevan State University, Al. Manookian 1, 0025 Yerevan (Armenia); Kirakosyan, A.A. [Department of Solid State Physics, Yerevan State University, Al. Manookian 1, 0025 Yerevan (Armenia); Restrepo, R.L. [Escuela de Ingenieria de Antioquia, AA 7516 Medellin (Colombia); Duque, C.A. [Instituto de Fisica, Universidad de Antioquia, AA 1226 Medellin (Colombia)

    2013-02-15

    The linear and nonlinear intra-band optical absorption coefficients in GaAs/Ga{sub 1-x}Al{sub x}As two-dimensional concentric double quantum rings are investigated. Taking into account the combined effects of hydrostatic pressure and aluminum concentration the energies of the ground (n=1,l=0) and the first excited state (n=2,l=1) have been found using the effective mass approximation and the transfer matrix formalism. The energies of these states and the corresponding threshold energy of the intra-band optical transitions are examined as a function of hydrostatic pressure and aluminum concentration for different sizes of the structure. We also investigated the dependencies of the linear, nonlinear, and total optical absorption coefficients as functions of the incident photon energy for different values of hydrostatic pressure, aluminum concentration, sizes of the structure, and incident optical intensity. Its is found that the effects of the hydrostatic pressure and the aluminum concentration lead to a shifting of the resonant peaks of the intra-band optical spectrum. - Highlights: Black-Right-Pointing-Pointer Linear and nonlinear intra-band absorption in quantum rings. Black-Right-Pointing-Pointer Threshold energy strongly depends on the hydrostatic pressure. Black-Right-Pointing-Pointer Threshold energy strongly depends on the stoichiometry and sizes of structure. Black-Right-Pointing-Pointer Optical absorption is affected by the incident optical intensity.

  2. Jovian Chromophore Characteristics from Multispectral HST Images

    Science.gov (United States)

    Strycker, Paul D.; Chanover, Nancy J.; Simon-Miller, Amy A.; Banfield, Don; Gierasch, Peter J.

    2011-01-01

    The chromophores responsible for coloring the jovian atmosphere are embedded within Jupiter's vertical aerosol structure. Sunlight propagates through this vertical distribution of aerosol particles, whose colors are defined by omega-bar (sub 0)(lambda), and we remotely observe the culmination of the radiative transfer as I/F(lambda). In this study, we employed a radiative transfer code to retrieve omega-bar (sub 0)(lambda) for particles in Jupiter's tropospheric haze at seven wavelengths in the near-UV and visible regimes. The data consisted of images of the 2008 passage of Oval BA to the south of the Great Red Spot obtained by the Wide Field Planetary Camera 2 on-board the Hubble Space Telescope. We present derived particle colors for locations that were selected from 14 weather regions, which spanned a large range of observed colors. All omega-bar (sub 0)(lambda) curves were absorbing in the blue, and omega-bar (sub 0)(lambda) increased monotonically to approximately unity as wavelength increased. We found accurate fits to all omega-bar (sub 0)(lambda) curves using an empirically derived functional form: omega-bar (sub 0)(lambda) = 1 A exp(-B lambda). The best-fit parameters for the mean omega-bar (sub 0)(lambda) curve were A = 25.4 and B = 0.0149 for lambda in units of nm. We performed a principal component analysis (PCA) on our omega-bar (sub 0)(lambda) results and found that one or two independent chromophores were sufficient to produce the variations in omega-bar (sub 0)(lambda). A PCA of I/F(lambda) for the same jovian locations resulted in principal components (PCs) with roughly the same variances as the omega-bar (sub 0)(lambda) PCA, but they did not result in a one-to-one mapping of PC amplitudes between the omega-bar (sub 0)(lambda) PCA and I/F(lambda) PCA. We suggest that statistical analyses performed on I/ F(lambda) image cubes have limited applicability to the characterization of chromophores in the jovian atmosphere due to the sensitivity of 1/ F

  3. Unmixing chromophores in human skin with a 3D multispectral optoacoustic mesoscopy system

    Science.gov (United States)

    Schwarz, Mathias; Aguirre, Juan; Soliman, Dominik; Buehler, Andreas; Ntziachristos, Vasilis

    2016-03-01

    The absorption of visible light by human skin is governed by a number of natural chromophores: Eumelanin, pheomelanin, oxyhemoglobin, and deoxyhemoglobin are the major absorbers in the visible range in cutaneous tissue. Label-free quantification of these tissue chromophores is an important step of optoacoustic (photoacoustic) imaging towards clinical application, since it provides relevant information in diseases. In tumor cells, for instance, there are metabolic changes (Warburg effect) compared to healthy cells, leading to changes in oxygenation in the environment of tumors. In malignant melanoma changes in the absorption spectrum have been observed compared to the spectrum of nonmalignant nevi. So far, optoacoustic imaging has been applied to human skin mostly in single-wavelength mode, providing anatomical information but no functional information. In this work, we excited the tissue by a tunable laser source in the spectral range from 413-680 nm with a repetition rate of 50 Hz. The laser was operated in wavelengthsweep mode emitting consecutive pulses at various wavelengths that allowed for automatic co-registration of the multispectral datasets. The multispectral raster-scan optoacoustic mesoscopy (MSOM) system provides a lateral resolution of melanin, oxyhemoglobin, and deoxyhemoglobin, three-dimensional absorption maps of all three absorbers were calculated from the multispectral dataset.

  4. A novel fluorescent turn-on probe for bisulfite based on NBD chromophore

    Indian Academy of Sciences (India)

    Puhui Xie; Guangqin Gao; Wenjie Zhang; Guoyu Yang; Qiu Jin

    2015-07-01

    A novel fluorescent turn-on probe (compound 1) for bisulfite based on 7-nitrobenz-2-oxa-1,3-diazole (NBD) chromophore has been developed. Its sensing behavior toward various anions was investigated by absorption and fluorescence techniques. This probe shows a selective, turn-on fluorescent response and ratiometric colorimetric response toward bisulfite in aqueous acetonitrile solutions. The possible recognition mechanism of probe 1 toward bisulfite was illustrated by MS spectra analysis and DFT calculations Probe 1 was used to determine bisulfite in real-life samples with good recoveries.

  5. Donor impurity-related linear and nonlinear optical absorption coefficients in GaAs/Ga{sub 1−x}Al{sub x}As concentric double quantum rings: Effects of geometry, hydrostatic pressure, and aluminum concentration

    Energy Technology Data Exchange (ETDEWEB)

    Baghramyan, H.M.; Barseghyan, M.G.; Kirakosyan, A.A. [Department of Solid State Physics, Yerevan State University, Al. Manookian 1, 0025 Yerevan (Armenia); Restrepo, R.L. [Física Teórica y Aplicada, Escuela de Ingeniería de Antioquia, AA 7516, Medellín (Colombia); Grupo de Materia Condensada-UdeA, Instituto de Física, Facultadde Ciencias Exactas y Naturales, Universidad de Antioquia UdeA, Calle 70 No. 52-21,Medellín (Colombia); Mora-Ramos, M.E. [Grupo de Materia Condensada-UdeA, Instituto de Física, Facultadde Ciencias Exactas y Naturales, Universidad de Antioquia UdeA, Calle 70 No. 52-21,Medellín (Colombia); Facultad de Ciencias, Universidad Autónoma del Estado de Morelos, Av. Universidad 1001, CP 62209, Cuernavaca, Morelos (Mexico); Duque, C.A., E-mail: cduque@fisica.udea.edu.co [Grupo de Materia Condensada-UdeA, Instituto de Física, Facultadde Ciencias Exactas y Naturales, Universidad de Antioquia UdeA, Calle 70 No. 52-21,Medellín (Colombia)

    2014-01-15

    The linear and nonlinear optical absorption associated with the transition between 1s and 2s states corresponding to the electron-donor-impurity complex in GaAs/Ga{sub 1−x}Al{sub x}As three-dimensional concentric double quantum rings are investigated. Taking into account the combined effects of hydrostatic pressure and the variation of the aluminum concentration, the energies of the ground and first excited s-like states of a donor impurity in such a system have been calculated using the effective mass approximation and a variational method. The energies of these states and the corresponding threshold energy of the optical transitions are examined as functions of hydrostatic pressure, aluminum concentration, radial impurity position, as well as the geometrical dimensions of the structure. The dependencies of the linear, nonlinear and total optical absorption coefficients as functions of the incident photon energy are investigated for different values of those mentioned parameters. It is found that the influences mentioned above lead to either redshifts or blueshifts of the resonant peaks of the optical absorption spectrum. It is particularly discussed the unusual property exhibited by the third-order nonlinear of becoming positive for photon energies below the resonant transition one. It is shown that this phenomenon is associated with the particular features of the system under study, which determine the values of the electric dipole moment matrix elements. -- Highlights: • Intra-band optical absorption associated to impurity states in double quantum rings. • Combined effects of hydrostatic pressure and aluminum concentration are studied. • The influences mentioned above lead to shifts of resonant peaks. • It is discussed an unusual property exhibited by the third-order nonlinear absorption.

  6. High diffraction efficiency at low electric field in photorefractive polymers doped with arylimine chromophores

    Energy Technology Data Exchange (ETDEWEB)

    Maldonado, J L; Ponce-de-Leon, Y; Ramos-Ortiz, G; RodrIguez, M; Meneses-Nava, M A; Barbosa-Garcia, O [Centro de Investigaciones en Optica A.P. 1-948, 37000 Leon, Gto. (Mexico); Santillan, R [Departamento de Quimica, Centro de Investigacion y de Estudios Avanzados del IPN, A.P. 14-740, 07000 Mexico D.F. (Mexico); Farfan, N, E-mail: jlmr@cio.m [Facultad de QuImica, Departamento de QuImica Organica, Universidad Nacional Autonoma de Mexico, Mexico, D.F., 04510 (Mexico)

    2009-04-07

    We report on the high photorefractive performance of organic polymers doped with arylimine chromophore (diethylaminosalicylaldiminato)nitrobenzene (H1) and its derivative (diethylaminophenylaldiminato)nitrophenol (H2). Polymer blends of H1 and H2 with PVK : ECZ : C{sub 60} at 25 : 49 : 25 : 1 wt% and H2 : PVK : ECZ : PC{sub 61}BM at the same concentration were fabricated. The electric field (E) steady-state diffraction efficiency dependence and the optical gain were measured through holographic experiments at room temperature. For polymers based on chromophore H2, overmodulation of the diffraction efficiency was measured at just E = 32 V {mu}m{sup -1} obtaining 75%, and for polymers based on H1, diffraction of 87% (overmodulation) at E = 48 V {mu}m{sup -1} was observed. Holographic recording imaging was demonstrated at an electric field of just 10-14 V {mu}m{sup -1}.

  7. Remote Sensing of the Absorption Coefficients and Chlorophyll a Concentration in the U.S. Southern Middle Atlantic Bight from SeaWiFS and MODIS-Aqua

    Science.gov (United States)

    Pan, Xiaoju; Mannino, Antonio; Russ, Mary E.; Hooker, Stanford B.

    2008-01-01

    At present, satellite remote sensing of coastal water quality and constituent concentration is subject to large errors as compared to the capability of satellite sensors in oceanic waters. In this study, field measurements collected on a series of cruises within U.S. southern Middle Atlantic Bight (SMAB) were applied to improve retrievals of satellite ocean color products in order to examine the factors that regulate the bio-optical properties within the continental shelf waters of the SMAB. The first objective was to develop improvements in satellite retrievals of absorption coefficients of phytoplankton (a(sub ph)), colored dissolved organic matter (CDOM) (a(sub g)), non-pigmented particles (a(sub d)), and non-pigmented particles plus CDOM (a(sub dg)), and chlorophyll a concentration ([Chl_a]). Several algorithms were compared to derive constituent absorption coefficients from remote sensing reflectance (R(sub rs)) ratios. The validation match-ups showed that the mean absolute percent differences (MAPD) were typically less than 35%, although higher errors were found for a(sub d) retrievals. Seasonal and spatial variability of satellite-derived absorption coefficients and [Chl_a] was apparent and consistent with field data. CDOM is a major contributor to the bio-optical properties of the SMAB, accounting for 35-70% of total light absorption by particles plus CDOM at 443 nm, as compared to 30-45% for phytoplankton and 0-20% for non-pigmented particles. The overestimation of [Chl_a] from the operational satellite algorithms may be attributed to the strong CDOM absorption in this region. River discharge is important in controlling the bio-optical environment, but cannot explain all of the regional and seasonal variability of biogeochemical constituents in the SMAB.

  8. Excitation energy transfer in chromophore aggregates within a dissipative medium

    Energy Technology Data Exchange (ETDEWEB)

    Belov, Alexander S., E-mail: belov_as@mail.com [Chemistry Department, Moscow State University, Leninskie Gory 1/3, Moscow (Russian Federation); Eremin, Vadim V. [Chemistry Department, Moscow State University, Leninskie Gory 1/3, Moscow (Russian Federation)

    2012-10-01

    The Redfield theory-based model of excitation energy transfer in chromophore ensembles within dissipative environment is proposed. Application of the multipole expansion to an operator of interaction between the chromophore molecules and the environment together with some assumptions about the latter led to the closed-form expressions for the elements of the dissipation tensor. These expressions relate the rates of transition between eigenstates of a chromophore ensemble with the spectral and electronic properties of an environment and the chromophore molecules. For several model cases the exact solution of the Redfield equations was obtained. -- Highlights: ► A model for electronic relaxation dynamics in supramolecular ensembles is proposed. ► Closed-form expressions for relaxation rates are derived. ► Redfield equations are solved in closed form for several model systems. ► The effect of structural and electronic parameters on relaxation rates is discussed.

  9. Highly fluorescent benzofuran derivatives of the GFP chromophore

    DEFF Research Database (Denmark)

    Christensen, Mikkel Andreas; Jennum, Karsten Stein; Abrahamsen, Peter Bæch;

    2012-01-01

    Intramolecular cyclization reactions of Green Fluorescent Protein chromophores (GFPc) containing an arylethynyl ortho-substituent at the phenol ring provide new aryl-substituted benzofuran derivatives of the GFPc. Some of these heteroaromatic compounds exhibit significantly enhanced fluorescence ...

  10. Comparison of glucose concentration and glucose absorption from the GI-tract in pigs in whole blood and in plasma

    DEFF Research Database (Denmark)

    Theil, Peter Kappel; Jørgensen, Henry; Larsen, Torben;

    2010-01-01

    The present investigation was undertaken to compare glucose absorption from the gastro-intestinal tract quantified in either whole blood or plasma using the arterio-venous differences and portal blood flow measurements. Pigs were surgically modified with catheters in the portal vein and the mesen......The present investigation was undertaken to compare glucose absorption from the gastro-intestinal tract quantified in either whole blood or plasma using the arterio-venous differences and portal blood flow measurements. Pigs were surgically modified with catheters in the portal vein...... and the mesenteric artery and a flow probe around the portal vein to allow assessment of nutrient absorption using Fick's principle. In Exp. 1, six sows (mean LW = 202 ± 28 kg) were fed three diets containing 517, 216 or 225 g/kg DM of starch, respectively. In Exp. 2, six female pigs (mean LW = 59 ± 2 kg) were fed...... three different diets with similar contents of starch (470-506 g/kg DM). The diets in both studies differed regarding amount and solubility of fibre. Blood samples were collected repeatedly 0-10 h after morning feeding. Glucose was measured in whole blood using a glucometer (Accu-Chek®) and in plasma...

  11. Chromophore structure of the physiologically active form (Pfr) of phytochrome

    OpenAIRE

    Rüdiger, W.; Thümmler, F.; Cmiel, E.; Schneider, S

    1983-01-01

    Chromopeptides were prepared by proteolytic digestion of phytochrome (far-red absorbing form, Pfr) and of phycocyanin. The phycocyanobilin peptide, the chromophore of which is Z,Z,Z-configurated, was modified to the Z,Z,E isomeric chromophore. It has been demonstrated earlier that the Pfr chromopeptide and the Z,Z,E-configurated phycocyanin chromopeptide behave similarly with regard to spectral and chromatographic properties and reactivity. We present evidence here, obtained by high-resolutio...

  12. Frequency Comb Spectroscopy of CO(2), CH(4), H(2)O, and Isotopes Over a 2 km Outdoor Path: Concentration Retrievals Using Different Absorption Models

    Science.gov (United States)

    Rieker, G. B.; Giorgetta, F. R.; Coddington, I.; Swann, W. C.; Zolot, A. M.; Sinclair, L. C.; Baumann, E.; Cromer, C.; Newbury, N.

    2014-06-01

    A dual frequency comb spectrometer is used to make high signal-to-noise measurements of atmospheric absorption from 5990 to 6260 cm-1 with 0.0033 cm-1 point spacing and ˜4·10-8 cm-1 resolution over a 2 km outdoor air path. The spectra, which encompass over 700 absorption features of CO2, CH4, and H2O, are fit with several absorption models to assess the quality of the models and to retrieve the various species concentrations and air temperature. The models tested include the HITRAN 2008 and 2012 spectral databases with Voigt line-shape profiles as well as a recent model for CO2 that includes the effects of line mixing and speed dependence. Residuals are typically less than 2% of the peak absorbance, except for the HITRAN 2012 CH4 model, which exhibits larger residuals. Species concentration retrievals using the models are compared with a calibrated point sensor mounted on a tower near the open air path.

  13. Application of NMR-based metabonomics suggests a relationship between betaine absorption and elevated creatine plasma concentrations in catheterised sows

    DEFF Research Database (Denmark)

    Yde, Christian Clement; Westerhuis, Johan A.; Bertram, Hanne Christine S.;

    2012-01-01

    of these metabolites from the small intestine. The LF diet resulted in a higher betaine concentration in the blood than the two high-fibre diets (P¼0·008). This leads to higher plasma concentrations of methionine (P¼0·0028) and creatine (P¼0·020) of endogenous origin. In conclusion, the use of NMR spectroscopy...... for measuring nutrient uptake in the present study elucidated the relationship between betaine uptake and elevated creatine plasma concentrations....

  14. Synthesis and photoisomerization reactions of norbornadienes possessing chalcone chromophore and reactions of the formed quadricyclane derivatives

    Energy Technology Data Exchange (ETDEWEB)

    Hasegawa, Eietsu; Mukai, Toshio; Toda, Takashi

    1988-08-10

    For efficient utilization of solar light energy, 2-aroyl-3-arylnorbornadienes derivatives (1)(with long wave absorption band) which possess a chalcone chromophore were synthesized, and the photoisomerization reactions were investigated. (1) possess the absorption band in visible light region corresponding to the kind of substitutional group introduced. Quadricyclane derivatives (2) were formed with the quantum yields of 0.06-0.60 in the photoisomerizations though they differ correspond to the substitutional group. (2) were shifted easily to (1) with heating, furthermore, isomerizations of (2) to (1) were carried out in good yields by contact with silver perchlorate, trifluoroacetic acid and even with silica gel. Photoisomerization reactions of (2) gave tricyclane derivatives (7) added ethanol in high yield, in leaving at room temperature after mixing with ethanol. (1 fig, 7 tabs, 24 refs)

  15. Measurement of nonuniform temperature and concentration distributions by combining line-of-sight tunable diode laser absorption spectroscopy with regularization methods.

    Science.gov (United States)

    Liu, Chang; Xu, Lijun; Cao, Zhang

    2013-07-10

    Regularization methods were combined with line-of-sight tunable diode laser absorption spectroscopy (TDLAS) to measure nonuniform temperature and concentration distributions along the laser path when a priori information of the temperature distribution tendency is available. Relying on measurements of 12 absorption transitions of water vapor from 1300 to 1350 nm, the nonuniform temperature and concentration distributions were retrieved by making the use of nonlinear and linear regularization methods, respectively. To examine the effectiveness of regularization methods, a simulated annealing algorithm for nonlinear regularization was implemented to reconstruct the temperature distribution, while three linear regularization methods, namely truncated singular value decomposition, Tikhonov regularization, and a revised Tikhonov regularization method, were implemented to retrieve the concentration distribution. The results show that regularization methods not only can be used to retrieve temperature and concentration distributions closer to the original but also are less sensitive to measurement noise. When no sufficient optical access is available for TDLAS tomography, the methods proposed in the paper can be used to obtain more details of the combustion field with higher accuracy and robustness, which are expected to play a more important role in combustion diagnosis.

  16. Fiber optic-based fluorescence detection system for in vivo studies of exogenous chromophore pharmacokinetics

    Science.gov (United States)

    Doiron, Daniel R.; Dunn, J. B.; Mitchell, W. L.; Dalton, Brian K.; Garbo, Greta M.; Warner, Jon A.

    1995-05-01

    The detection and quantification of the concentration of exogenous chromophores in-vivo by their fluorescence is complicated by many physical and geometrical parameters. Measurement of such signals is advantageous in determining the pharmacokinetics of photosensitizers such as those used in photodynamic therapy (PDT) or to assist in the diagnosis of tissue histological state. To overcome these difficulties a ratio based fiber optic contact fluorometer has been developed. This fluorescence detection system (FDS) uses the ratio of the fluorescence emission peak of the exogenous chromophore to that of endogenous chromophores, i.e. autofluorescence, to correct for a variety of parameters affecting the magnitude of the measured signals. By doing so it also minimizes the range of baseline measurements prior to exogenous drug injection, for various tissue types. Design of the FDS and results of its testing in animals and patients using the second generation photosensitizer Tin ethyletiopurpurin (SnET2) are presented. These results support the feasibility and usefulness of the Ratio FDS system.

  17. Three-week psyllium-husk supplementation: effect on plasma cholesterol concentrations, fecal steroid excretion, and carbohydrate absorption in men.

    Science.gov (United States)

    Abraham, Z D; Mehta, T

    1988-01-01

    This study was conducted to determine the effect of psyllium husk on plasma total and lipoprotein cholesterol in healthy human subjects and to elucidate possible hypocholesterolemic mechanisms. Seven males were given a nutritionally controlled diet based on their usual intake for x = 3 wk followed by 3 wk in which 21 g/d per person psyllium husk was added to the basal diet. After 10 d and after 3 wk of psyllium supplementation, total, low-density, and high-density cholesterol were reduced (p less than 0.002, p less than 0.01, and p less than 0.03, respectively). Fecal steroid excretion, determined from 5-d collections, was not affected by psyllium supplementation. Although psyllium tended to delay lipid absorption, plasma triglycerides, retinyl esters, glucose, insulin, and glucagon quantitated during meal tolerance tests given on the last day of each diet period were not different (p greater than 0.05). Thus the cholesterol-lowering mechanism of psyllium may not involve increased bile acid excretion or decreases in nutrient absorption. PMID:2827455

  18. Absorption kinetics and steady-state plasma concentrations of theophylline following therapeutic doses of two sustained-release preparations

    DEFF Research Database (Denmark)

    Andersen, O; Nielsen, M K; Eriksen, P B;

    1983-01-01

    Ten healthy volunteers received two sustained-release preparations as a single and multiple dose regimen in an open crossover study. Plasma theophylline concentrations were measured by an enzyme immunoassay. The limited fluctuation of the theophylline levels at steady state, with twice daily...... formulation, whereas this was not the case for the other (r = 0.27 and 0.49). The daily dose necessary to keep the plasma concentration within the therapeutic range of 55-110 mumole/liter varied from 7.9 to 22.9 mg/kg. Only mild side effects were recorded, but they were not correlated to the plasma...... theophylline concentration....

  19. Rational Design of Dipolar Chromophore as an Efficient Dopant-Free Hole-Transporting Material for Perovskite Solar Cells.

    Science.gov (United States)

    Li, Zhong'an; Zhu, Zonglong; Chueh, Chu-Chen; Jo, Sae Byeok; Luo, Jingdong; Jang, Sei-Hum; Jen, Alex K-Y

    2016-09-14

    In this paper, an electron donor-acceptor (D-A) substituted dipolar chromophore (BTPA-TCNE) is developed to serve as an efficient dopant-free hole-transporting material (HTM) for perovskite solar cells (PVSCs). BTPA-TCNE is synthesized via a simple reaction between a triphenylamine-based Michler's base and tetracyanoethylene. This chromophore possesses a zwitterionic resonance structure in the ground state, as evidenced by X-ray crystallography and transient absorption spectroscopies. Moreover, BTPA-TCNE shows an antiparallel molecular packing (i.e., centrosymmetric dimers) in its crystalline state, which cancels out its overall molecular dipole moment to facilitate charge transport. As a result, BTPA-TCNE can be employed as an effective dopant-free HTM to realize an efficient (PCE ≈ 17.0%) PVSC in the conventional n-i-p configuration, outperforming the control device with doped spiro-OMeTAD HTM.

  20. Subterranean Carbon Dioxide Concentration Analysis Utilizing a Scalable Optical Fiber-Based Absorption Cell Array for Carbon Capture and Storage Site Integrity Monitoring

    Science.gov (United States)

    Wicks, G. R.; Soukup, B.; Repasky, K. S.; Carlsten, J.

    2011-12-01

    Geologic carbon sequestration is a means to mitigate the increasing atmospheric concentration of carbon dioxide (CO2) by capturing the CO2 at a source such as a power generation facility and storing the captured CO2 in geologic formations. Many technological advances will need to occur for successful carbon sequestration, including near surface monitoring tools and techniques to ensure site integrity and public safety. Researchers at Montana State University (MSU) are developing a scalable fiber sensor array in a call/return configuration for monitoring near sub-surface CO2 concentrations for the purpose of carbon sequestration site integrity monitoring. The system measures CO2 concentrations through the application of tunable diode laser absorption spectroscopy (TDLAS). The instrument utilizes four fiber probes (absorption cells) connected to a detector, a fiber-optic beam splitter, and a 1 x 4 fiber-optic micro-electromechanical (MEMS) switch that can direct the light to one of the four probes, and employs a single tunable distributed feedback (DFB) diode laser with a center wavelength of 2.004 μm to access CO2 absorption features. The fiber sensor array can easily be reconfigured by simply moving the fiber probes. Low cost is achieved by using inexpensive passive components in the probes while limiting the number of the more expensive components including the DFB laser, the detector, and the 1 X 4 MEMS switch. The fiber sensor system was tested over a sixty day period centered on a thirty day controlled CO2 release at the Zero Emission Research Technology (ZERT) facility that was developed for sub-surface and near surface carbon sequestration monitoring research. In this presentation, the design of the fiber sensor array system will be presented, along with the system performance during the sixty day monitoring experiment.

  1. Associated depression in pseudophakic patients with intraocular lens with and without chromophore

    Science.gov (United States)

    Mendoza-Mendieta, María Elena; Lorenzo-Mejía, Ana Aurora

    2016-01-01

    Background With aging, the crystalline lens turns yellowish, which increases the absorption of wavelengths in the blue electromagnetic spectrum, reducing their photoreception in the retina. Since these wavelengths are the main stimulus in the regulation of the circadian rhythm, progressive reduction in their transmission is associated with chronic sleep disturbances and depression in elderly patients. Cataract extraction improves circadian photoreception at any age. However, lenses that block blue waves have 27% to 38% less melatonin suppression than lenses that block only ultraviolet (UV) rays. Purpose To assess the depression symptoms in subjects who have had bilateral phacoemul-sification and intraocular lens (IOL) implants, one group with yellow chromophore IOLs and the other group with transparent IOLs were compared. Setting Association to Prevent Blindness in Mexico (APEC), Hospital “Dr Luis Sánchez Bulnes”. Design This was an observational, cross-sectional, and single-center study. Materials and methods Twenty-six subjects between 60 and 80 years of age, with a history of bilateral phacoemulsification and placement of the same type of IOL in both eyes from 4 to 12 months prior to the study, who attended the follow-up visits and agreed to participate in this study, and provided signed informed consent were included in the study. They were asked to answer the short version of the 15-item Geriatric Depression Scale. Results The average age of the study participants was 72.5±5.94 years. The group without chromophore included 46.1% (n=12) of the patients and the group with chromophore included 53.9% (n=14) of the patients (P=0.088). Conclusion In the group of patients with IOLs that block the passage of blue light, the depression rate was 21.4%, a rate similar to that observed in the elderly population, whereas no patients in the group with transparent IOLs had depression. PMID:27099465

  2. Photostability of amino acids: photodissociation dynamics of phenylalanine chromophores.

    Science.gov (United States)

    Tseng, Chien-Ming; Lin, Ming-Fu; Yang, Yi Lin; Ho, Yu Chieh; Ni, Chi-Kung; Chang, Jia-Lin

    2010-05-21

    The theoretical prediction of H atom elimination on the excited state of phenol, imidazole and indole, the respective chromophores for the amino acids tyrosine, histidine and tryptophan, and the confirmation of theoretical prediction by experimental observations have a great impact on the explanation of photostability of amino acids upon irradiation with UV photons. On the other hand, no theoretical prediction of the excited state photodissociation dynamics has been made on the other aromatic amino acid, phenylalanine. In this work, photodissociation dynamics for various phenylalanine chromophores, including, phenylethylamine, N-methyl-phenylethylamine, and N-acetyl phenylalanine methyl ester was investigated in a molecular beam at 248 and 193 nm using multimass ion imaging techniques. The major dissociation channel for these compounds is the C-C bond cleavage. However, the photofragment translational energy distribution of phenylethylamine contains two components. The slow component corresponds to the dissociation on the ground state surface after internal conversion, and the fast component represents the dissociation from an excited state with a large exit barrier. The competition between the dissociation on the ground state and on the excited state changes as the size of chromophores increases. Internal conversion to the ground state prior to dissociation becomes the major nonradiative process for large chromophores. This study reveals the size-dependent photostability for these amino acid chromophores.

  3. The rate of intestinal glucose absorption is correlated with plasma glucose-dependent insulinotropic polypeptide concentrations in healthy men

    DEFF Research Database (Denmark)

    Wachters-Hagedoorn, Renate E; Priebe, Marion G; Heimweg, Janneke A J;

    2006-01-01

    and slowly available glucose. In a crossover study, glucose, insulin, GLP-1, and GIP concentrations were monitored for 6 h after consumption of glucose, uncooked cornstarch (UCCS) or corn pasta in 7 healthy men. All test meals were naturally labeled with 13C. Using a primed, continuous D-[6,6-2H2]glucose...

  4. Determination of lead in water resources by flame atomic absorption spectrometry after pre-concentration with ammonium pyrrolidinedithiocarbamate immobilized on surfactant-coated alumina

    Directory of Open Access Journals (Sweden)

    SAYED MORTEZA TALEBI

    2007-06-01

    Full Text Available Arapid, simple, and sensitive procedure based on modified solid phase extraction was developed for the pre-concentration and determination of trace amount of lead in water resources. Lead was reacted with ammonium pyrrolidinedithiocarbamate (APDC to make a complex. The complex was then collected in a column packed with surfactant-coated alumina. The parameters affecting the collection efficiency and desorption rate of the lead complexes from the column were investigated and optimized. The collection efficiency of the lead complex on the adsorbent was excellent under the optimized conditions. The results obtained from the recovery test showed the capability and reliability of the method for the analysis of trace amounts of lead. The proposed pre-concentration procedure made it possible to apply conventional flame atomic absorption spectrometry (FAAS for the sensitive determination of trace amounts of lead in water resources.

  5. Prediction of BOD, COD, and total nitrogen concentrations in a typical urban river using a fluorescence excitation-emission matrix with PARAFAC and UV absorption indices.

    Science.gov (United States)

    Hur, Jin; Cho, Jinwoo

    2012-01-01

    The development of a real-time monitoring tool for the estimation of water quality is essential for efficient management of river pollution in urban areas. The Gap River in Korea is a typical urban river, which is affected by the effluent of a wastewater treatment plant (WWTP) and various anthropogenic activities. In this study, fluorescence excitation-emission matrices (EEM) with parallel factor analysis (PARAFAC) and UV absorption values at 220 nm and 254 nm were applied to evaluate the estimation capabilities for biochemical oxygen demand (BOD), chemical oxygen demand (COD), and total nitrogen (TN) concentrations of the river samples. Three components were successfully identified by the PARAFAC modeling from the fluorescence EEM data, in which each fluorophore group represents microbial humic-like (C1), terrestrial humic-like organic substances (C2), and protein-like organic substances (C3), and UV absorption indices (UV(220) and UV(254)), and the score values of the three PARAFAC components were selected as the estimation parameters for the nitrogen and the organic pollution of the river samples. Among the selected indices, UV(220), C3 and C1 exhibited the highest correlation coefficients with BOD, COD, and TN concentrations, respectively. Multiple regression analysis using UV(220) and C3 demonstrated the enhancement of the prediction capability for TN.

  6. Prediction of BOD, COD, and Total Nitrogen Concentrations in a Typical Urban River Using a Fluorescence Excitation-Emission Matrix with PARAFAC and UV Absorption Indices

    Directory of Open Access Journals (Sweden)

    Jin Hur

    2012-01-01

    Full Text Available The development of a real-time monitoring tool for the estimation of water quality is essential for efficient management of river pollution in urban areas. The Gap River in Korea is a typical urban river, which is affected by the effluent of a wastewater treatment plant (WWTP and various anthropogenic activities. In this study, fluorescence excitation-emission matrices (EEM with parallel factor analysis (PARAFAC and UV absorption values at 220 nm and 254 nm were applied to evaluate the estimation capabilities for biochemical oxygen demand (BOD, chemical oxygen demand (COD, and total nitrogen (TN concentrations of the river samples. Three components were successfully identified by the PARAFAC modeling from the fluorescence EEM data, in which each fluorophore group represents microbial humic-like (C1, terrestrial humic-like organic substances (C2, and protein-like organic substances (C3, and UV absorption indices (UV220 and UV254, and the score values of the three PARAFAC components were selected as the estimation parameters for the nitrogen and the organic pollution of the river samples. Among the selected indices, UV220, C3 and C1 exhibited the highest correlation coefficients with BOD, COD, and TN concentrations, respectively. Multiple regression analysis using UV220 and C3 demonstrated the enhancement of the prediction capability for TN.

  7. Molecular design of new chromophores for high performance poled polymers

    Institute of Scientific and Technical Information of China (English)

    2000-01-01

    Based on the principles of molecular engineering, a series of new chromophores with high second-or der nonlinear optical(NLO)activities have been designed for achieving a trade-off of the nonlinearity-transparency-ther mal stability. The NLO properties of these chromophores have been investigated theoretically by employing the AMI/Fi nite Field approach. It is found that the calculated μβ0 values of some designed chromophores can reach the magnitude of 10-45 esu, and the highest decomposition temperature Td can be as high as 377℃, the highest glass transition tem perature Ts of their donor-embedded addition-type polyimides can be as high as 324℃.

  8. Absorption and tissue distribution of radioactivity in mussels (Mytilus Galloprovincialis) exposed to low concentrations of 14C-polychlorinated biphenyl

    International Nuclear Information System (INIS)

    Mussels (Mytilus galloprovincialis) were exposed for 144 h to an isomeric 14C polychlorinated biphenyl (PCB) mixture at an initial concentration of 4.6 μg l-1. Animals were sampled after 6, 12, 24, 72 and 144 h of exposure for sex differences in PCB tissue distribution. PCB was readily absorbed within 12 h and then slowly eliminated from the body with a biological half-time of 209 h. No sexual differences were observed except with mussels sampled at 12 h, where 14C activity was significantly higher (P14C activity measured in gills appeared to be related to the PCB water concentration. 14 refs.; 3 figs.; 1 table

  9. THE PURIFICATION OF GLUCOSE SYRUP FROM TAPIOCA BY USING ABSORPTION METHOD AND THE CONCENTRATION PROCESS BY VACUUM EVAPORATOR

    OpenAIRE

    Zainal; Laga, Amran; Bastian, Februadi

    2013-01-01

    The glucose syrupe production from tapioca needs to remove dirt and the colour. The water content should also be reduced. The aobjectives of this research were to identify the efffectiveness of glucose syrup purification by using the combination of activated charcoal and zeolit, and to determine the optimal evaporation time on the concentration process of glucose syrup to produce high glucose syrup. The materials were tapioca, activated charcoal, and zeolit. The research was started with conv...

  10. Synthesis, structure, ultrafast kinetics, and light-induced dynamics of CuHETPHEN chromophores.

    Science.gov (United States)

    Kohler, Lars; Hayes, Dugan; Hong, Jiyun; Carter, Tyler J; Shelby, Megan L; Fransted, Kelly A; Chen, Lin X; Mulfort, Karen L

    2016-06-14

    Five heteroleptic Cu(i)bis(phenanthroline) chromophores with distinct variation in the steric bulk at the 2,9-phenanthroline position were synthesized using the HETPHEN method, and their ground and excited state properties are described. Analysis of the crystal structures reveals a significant distortion from tetrahedral geometry around the Cu(i) centre which is attributed to favourable aromatic interactions between the two phenanthroline ligands. Ultrafast and nanosecond transient optical spectroscopies reveal that the excited state lifetime can be tuned across two orders of magnitude up to 74 nanoseconds in acetonitrile by changing the 2,9-substituent from hydrogen to sec-butyl. X-ray transient absorption spectroscopy at the Cu K-edge confirmed Cu(i) oxidation to Cu(ii) and revealed a decrease of the Cu-N bond lengths in the excited state. The ground and excited state characterization presented here will guide the integration of CuHETPHEN chromophores into complex electron donor-acceptor architectures. PMID:26924711

  11. Associated depression in pseudophakic patients with intraocular lens with and without chromophore

    Directory of Open Access Journals (Sweden)

    Mendoza-Mendieta ME

    2016-03-01

    Full Text Available María Elena Mendoza-Mendieta, Ana Aurora Lorenzo-Mejía Association to Prevent Blindness in Mexico (APEC, Hospital “Dr Luis Sánchez Bulnes”, Mexico City, Mexico Background: With aging, the crystalline lens turns yellowish, which increases the absorption of wavelengths in the blue electromagnetic spectrum, reducing their photoreception in the retina. Since these wavelengths are the main stimulus in the regulation of the circadian rhythm, progressive reduction in their transmission is associated with chronic sleep disturbances and depression in elderly patients. Cataract extraction improves circadian photoreception at any age. However, lenses that block blue waves have 27% to 38% less melatonin suppression than lenses that block only ultraviolet (UV rays. Purpose: To assess the depression symptoms in subjects who have had bilateral phacoemulsification and intraocular lens (IOL implants, one group with yellow chromophore IOLs and the other group with transparent IOLs were compared. Setting: Association to Prevent Blindness in Mexico (APEC, Hospital “Dr Luis Sánchez Bulnes”. Design: This was an observational, cross-sectional, and single-center study. Materials and methods: Twenty-six subjects between 60 and 80 years of age, with a history of bilateral phacoemulsification and placement of the same type of IOL in both eyes from 4 to 12 months prior to the study, who attended the follow-up visits and agreed to participate in this study, and provided signed informed consent were included in the study. They were asked to answer the short version of the 15-item Geriatric Depression Scale. Results: The average age of the study participants was 72.5±5.94 years. The group without chromophore included 46.1% (n=12 of the patients and the group with chromophore included 53.9% (n=14 of the patients (P=0.088. Conclusion: In the group of patients with IOLs that block the passage of blue light, the depression rate was 21.4%, a rate similar to that

  12. Synthesis of Polymers Containing Covalently Bonded NLO Chromophores

    Science.gov (United States)

    Denga, Xiao-Hua; Sanghadasa, Mohan; Walton, Connie; Penn, Benjamin B.; Amai, Robert L. S.; Clark, Ronald D.

    1998-01-01

    Polymers containing covalently bonded nonlinear optical (NLO) chromophores are expected to possess special properties such as greater stability, better mechanical processing, and easier film formation than their non-polymeric equivalent. For the present work, polymethylmethacrylate (PMMA) was selected as the basic polymer unit on which to incorporate different NLO chromophores. The NLO components were variations of DIVA {[2-methoxyphenyl methylidene]-propanedinitrile} which we prepared from vanillin derivatives and malononitrile. These were esterified with methacrylic acid and polymerized either directly or with methyl methacrylate to form homopolymers or copolymers respectively. Characterization of the polymers and NLO property studies are underway.

  13. Dynamic light absorption of biomass burning organic carbon photochemically aged under natural sunlight

    Directory of Open Access Journals (Sweden)

    M. Zhong

    2013-08-01

    Full Text Available Wood burning aerosol produced under smoldering conditions was photochemically aged with different relative humidity (RH and NOx conditions using a 104 m3 dual outdoor chamber under natural sunlight. Light absorption of organic carbon (OC was measured over the course of photooxidation using a UV–visible spectrometer connected to an integrating sphere. At high RH, the color decayed rapidly. NOx slightly prolonged the color of wood smoke, suggesting that NOx promotes the formation of chromophores via secondary processes. Overall, the mass absorption cross-section (integrated between 280 nm and 600 nm of OC increased by 11–54% (except high RH in the morning and then gradually decreased by 19–68% in the afternoon. This dynamic change in light absorption of wood burning OC can be explained by two mechanisms: chromophore formation and sunlight bleaching. To investigate the effect of chemical transformation on light absorption, wood smoke particles were characterized using various spectrometers. The intensity of fluorescence, which is mainly related to polycyclic aromatic hydrocarbons (PAHs, rapidly decreased with time indicating the potential bleaching of PAHs. A decline of levoglucosan concentrations evinced the change of POA with time. The aerosol water content measured by Fourier transform infrared spectroscopy showed that wood burning aerosol became less hygroscopic as photooxidation proceeded. A similar trend in light absorption changes has been observed in ambient smoke aerosol originating from the 2012 County Line Wildfire in Florida. We conclude that the biomass burning OC becomes less light absorbing after 8–9 h sunlight exposure compared to fresh wood burning OC.

  14. Photocatalytic Water Splitting with the Acridine Chromophore: A Computational Study.

    Science.gov (United States)

    Liu, Xiaojun; Karsili, Tolga N V; Sobolewski, Andrzej L; Domcke, Wolfgang

    2015-08-20

    The hydrogen-bonded acridine-water complex is considered as a model system for the exploration of photochemical reactions which can lead to the splitting of water into H(•) and OH(•) radicals. The vertical excitation energies of the lowest singlet and triplet excited states of the complex were calculated with the CASSCF/CASPT2 and ADC(2) ab initio electronic-structure methods. In addition to the well-known excited states of the acridine chromophore, excited states of charge-transfer character were identified, in which an electron is transferred from the p orbital of the H2O molecule to the π* orbital of acridine. The low-energy barriers which separate these reactive charge-transfer states from the spectroscopic states of the acridine-water complex have been characterized by the calculation of two-dimensional relaxed potential-energy surfaces as functions of the H atom-transfer coordinate and the donor (O)-acceptor (N) distance. When populated, these charge-transfer states drive the transfer of a proton from the water molecule to acridine, which results in the acridinyl-hydroxyl biradical. The same computational methods were employed to explore the photochemistry of the (N-hydrogenated) acridinyl radical. The latter possesses low-lying (about 3.0 eV) ππ* excited states with appreciable oscillator strengths in addition to a low-lying dark ππ* excited state. The bound potential-energy functions of the ππ* excited states are predissociated by the potential-energy function of an excited state of πσ* character which is repulsive with respect to the NH stretching coordinate. The dissociation threshold of the πσ* state is about 2.7 eV and thus below the excitation energies of the bright ππ* states. The conical intersections of the πσ* state with the ππ* excited states and with the electronic ground state provide a mechanism for the direct and fast photodetachment of the H atom from the acridinyl radical. These computational results indicate that the H2

  15. Cloud point extraction-atomic absorption spectrometry for pre-concentration and determination of cadmium in cigarette samples.

    Science.gov (United States)

    Tavallali, Hossein; Boustani, Fazlollah; Yazdandoust, Mozhdeh; Aalaei, Mehdi; Tabandeh, Mahboobeh

    2013-05-01

    A new complexing agent, 2-((2-((1H-benzo[d]imidazole-2yl)methoxy)phenoxy)methyl)-1H-benzo[d]imidazole (BIMPI), was used in cloud point extraction and applied for selective pre-concentration of trace amounts of cadmium in cigarette samples. Cadmium was complexed with BIMPI in a buffer solution (pH = 10) using Triton X-114 as surfactant and quantitatively extracted into a small volume of the surfactant-rich phase after centrifugation. Under optimized conditions (pH = 10.0, 0.8 × 10(-4) mol L(-1) BIMPI and 0.08 % (w/v) Triton X-114), calibration graph was linear in the range of 34.0-1,670.0 μg L(-1). The proposed method was applied to the determination of Cd in various cigarette (tobacco) samples which gave satisfactory results.

  16. Photophysics of the Red Chromophore of HcRed: Evidence for Cis-Trans Isomerization and Protonation-State Changes

    Energy Technology Data Exchange (ETDEWEB)

    Cotlet, M.; Mudalige, K.; Habuchi, S.; Goodwin, P.M.; Pai, R.K.; De Schryver, F.

    2010-03-15

    HcRed is a dimeric intrinsically fluorescent protein with origins in the sea anemone Heteractis crispa. This protein exhibits deep red absorption and emission properties. Using a combination of ensemble and single molecule methods and by varying environmental parameters such as temperature and pH, we found spectroscopic evidence for the presence of two ground state conformers, trans and cis chromophores that are in thermal equilibrium and that follow different excited-state pathways upon exposure to light. The photocycle of HcRed appears to be a combination of both kindling proteins and bright emitting GFP/GFP-like proteins: the trans chromophore undergoes light driven isomerization followed by radiative relaxation with a fluorescence lifetime of 0.5 ns. The cis chromophore exhibits a photocycle similar to bright GFPs and GFP-like proteins such as enhanced GFP, enhanced YFP or DsRed, with radiative relaxation with a fluorescence lifetime of 1.5 ns, singlet-triplet deactivation on a microsecond time scale and solvent controlled protonation/deprotonation in tens of microseconds. Using single molecule spectroscopy, we identify trans and cis conformers at the level of individual moieties and show that it is possible that the two conformers can coexist in a single protein due to the dimeric nature of HcRed.

  17. Manipulating Excited-State Dynamics of Individual Light-Harvesting Chromophores through Restricted Motions in a Hydrated Nanoscale Protein Cavity.

    Science.gov (United States)

    Noriega, Rodrigo; Finley, Daniel T; Haberstroh, John; Geissler, Phillip L; Francis, Matthew B; Ginsberg, Naomi S

    2015-06-11

    Manipulating the photophysical properties of light-absorbing units is a crucial element in the design of biomimetic light-harvesting systems. Using a highly tunable synthetic platform combined with transient absorption and time-resolved fluorescence measurements and molecular dynamics simulations, we interrogate isolated chromophores covalently linked to different positions in the interior of the hydrated nanoscale cavity of a supramolecular protein assembly. We find that, following photoexcitation, the time scales over which these chromophores are solvated, undergo conformational rearrangements, and return to the ground state are highly sensitive to their position within this cavity and are significantly slower than in a bulk aqueous solution. Molecular dynamics simulations reveal the hindered translations and rotations of water molecules within the protein cavity with spatial specificity. The results presented herein show that fully hydrated nanoscale protein cavities are a promising way to mimic the tight protein pockets found in natural light-harvesting complexes. We also show that the interplay between protein, solvent, and chromophores can be used to substantially tune the relaxation processes within artificial light-harvesting assemblies in order to significantly improve the yield of interchromophore energy transfer and extend the range of excitation transport. Our observations have implications for other important, similarly sized bioinspired materials, such as nanoreactors and biocompatible targeted delivery agents. PMID:26035585

  18. Development of All-Solid-State Sensors for Measurement of Nitric Oxide and Ammonia Concentrations by Optical Absorption in Particle-Laden Combustion Exhaust Streams

    Energy Technology Data Exchange (ETDEWEB)

    Jerald A. Caton; Kalyan Annamalai; Robert P. Lucht

    2006-12-31

    An all-solid-state continuous-wave (cw) laser system for ultraviolet absorption measurements of the nitric oxide (NO) molecule has been developed and demonstrated. For the NO sensor, 250 nW of tunable cw ultraviolet radiation is produced by sum-frequency-mixing of 532-nm radiation from a diode-pumped Nd:YAG laser and tunable 395-nm radiation from an external cavity diode laser (ECDL). The sum-frequency-mixing process occurs in a beta-barium borate crystal. The nitric oxide absorption measurements are performed by tuning the ECDL and scanning the sum-frequency-mixed radiation over strong nitric oxide absorption lines near 226 nm. In Year 1 of the research, the nitric oxide sensor was used for measurements in the exhaust of a coal-fired laboratory combustion facility. The Texas A&M University boiler burner facility is a 30 kW (100,000 Btu/hr) downward-fired furnace with a steel shell encasing ceramic insulation. Measurements of nitric oxide concentration in the exhaust stream were performed after modification of the facility for laser based NOx diagnostics. The diode-laser-based ultraviolet absorption measurements were successful even when the beam was severely attenuated by particulate in the exhaust stream and window fouling. Single-laser-sweep measurements were demonstrated with an effective time resolution of 100 msec, limited at this time by the scan rate of our mechanically tuned ECDL system. In Year 2, the Toptica ECDL in the original system was replaced with a Sacher Lasers ECDL. The mode-hop-free tuning range and tuning rate of the Toptica ECDL were 25 GHz and a few Hz, respectively. The mode-hop-free tuning range and tuning rate of the Sacher Lasers ECDL were 90 GHz and a few hundred Hz, respectively. The Sacher Lasers ECDL thus allows us to scan over the entire NO absorption line and to determine the absorption baseline with increased accuracy and precision. The increased tuning rate is an advantage in that data can be acquired much more rapidly and the

  19. Concentrations and light absorption characteristics of carbonaceous aerosol in PM2.5 and PM10 of Lhasa city, the Tibetan Plateau

    Science.gov (United States)

    Li, Chaoliu; Chen, Pengfei; Kang, Shichang; Yan, Fangping; Hu, Zhaofu; Qu, Bin; Sillanpää, Mika

    2016-02-01

    Light absorption properties of carbonaceous aerosol strongly influence the Earth's radiative balance, yet the related knowledge is limited for the Tibetan Plateau (TP), the highest and largest plateau in the world. In this study, organic carbon (OC), elemental carbon (EC) and water soluble organic carbon (WSOC) of PM2.5 and PM10 of Lhasa collected from May 2013 to March 2014 were studied. It showed that daily-average concentrations of OC, EC and WSOC of PM2.5 and PM10 were lower than those of other megacities. Lhasa PM2.5 was characterized by low OC/EC ratio (1.46 ± 0.55), which was similar to that of Lhasa roadside PM2.5 (1.25 ± 0.45), reflecting mainly direct influence of primary emissions and less secondary formation. Hence, although Lhasa atmosphere is relatively clean, it is intensively influenced by local vehicle emissions. Mass absorption cross-section of EC (MACEC) for both PM2.5 and PM10 at 632 nm were 7.19 ± 1.19 m2 g-1 and 7.98 ± 2.32 m2 g-1, respectively, both of which had similar variation patterns to OC/EC and secondary OC (SOC)/OC, indicating that the increase of MACEC might be caused by coating with organic aerosol. Additionally, the loading of EC for both PM2.5 and PM10 showed logarithmic relationships with those of optical attenuation (ATN) of EC, implying that the shadowing effect enhanced logarithmic with increased EC concentration. MAC of WSOC at 365 nm for PM2.5 (0.74 ± 0.22 m2 g-1) and PM10 (0.78 ± 0.21 m2 g-1) were also close to reported values of other cities mainly influenced by fossil combustion. Additionally, attenuation at 365 nm of WSOC of both PM2.5 and PM10 showed the same relationship with their WSOC concentrations, implying no difference for light absorption properties of WSOC for these two grain sizes.

  20. Synthesis and nonlinear optical properties of copolymers of fluoro-containing bisphenol A and chromophores

    Institute of Scientific and Technical Information of China (English)

    Jie Ping Shi; Hui Yang; Li Wei; Hong Wen Hu; Guo Yuan Lu

    2011-01-01

    A series of new fluoro-containing copolymers have been synthesized by a Mitsunobu reaction with 4,4'-(hexafluoro-isopropylidene)bisphenol A (6FBPA) and the corresponding N, N-dihydroxyethylaminoaryl azo or ring-locked triene compounds, which have high thermal stability and good solubility in organic solvents. The nonlinear optical (NLO) measurements made by Marker fringe method at 1064 nm indicate that the copolymers embedded with the ring-locked triene and azo chromophores exhibit higher macroscopic nonlinear optical coefficient (70.2 pm/V and 26.5-34.6 pm/V, respectively). Thermal analysis and UV-visible absorption spectra show that the copolymers have good thermal stability (Td = 264-319 ℃) and optical transparency (λmax<500nm).

  1. Alphabet-Inspired Design of (Hetero)Aromatic Push-Pull Chromophores.

    Science.gov (United States)

    Klikar, Milan; Solanke, Parmeshwar; Tydlitát, Jiří; Bureš, Filip

    2016-08-01

    Push-pull molecules represent a unique and fascinating class of organic π-conjugated materials. Herein, we provide a summary of their recent extraordinary design inspired by letters of the alphabet, especially focusing on H-, L-, T-, V-, X-, and Y-shaped molecules. Representative structures from each class were presented and their fundamental properties and prospective applications were discussed. In particular, emphasis is given to molecules recently prepared in our laboratory with T-, X-, and Y-shaped arrangements based on indan-1,3-dione, benzene, pyridine, pyrazine, imidazole, and triphenylamine. These push-pull molecules turned out to be very efficient charge-transfer chromophores with tunable properties suitable for second-order nonlinear optics, two-photon absorption, reversible pH-induced and photochromic switching, photocatalysis, and intercalation. PMID:27272649

  2. Chromosphores in cellulosics, XI: isoloation and identification of residual chromophores from bacterial cellulose

    Science.gov (United States)

    In the present work, bacterial cellulose (BC) was analyzed for its chromophore content with the chromophore release and identification (CRI) method. In aged BC, seven chromophores were unambiguously identified, despite their very low (ppb) presence. The compounds contain 2-hydroxy-[1,4]benzoquinone,...

  3. Effect of preduodenal lipase inhibition in suckling rats on dietary octanoic acid (C8:0) gastric absorption and plasma octanoylated ghrelin concentration.

    Science.gov (United States)

    Lemarié, F; Cavalier, J-F; Garcia, C; Boissel, F; Point, V; Catheline, D; Legrand, P; Carrière, F; Rioux, V

    2016-09-01

    Part of medium chain fatty acids (MCFAs) coming from dietary triglycerides (TGs) can be directly absorbed through the gastric mucosa after the action of preduodenal lipase (lingual lipase in the rat). MCFA gastric absorption, particularly that of octanoic acid (C8:0), may have a physiological importance in the octanoylation of ghrelin, the orexigenic gastric peptide acting as an endogenous ligand of the hypothalamic growth hormone secretagogue receptor 1a (GHSR-1a). However, the amount of C8:0 absorbed in the stomach and its metabolic fate still haven't been clearly characterized. The purpose of the present study was to further characterize and quantify the importance of preduodenal lipase activity on the release and gastric absorption of dietary C8:0 and on the subsequent ghrelin octanoylation in the stomach mucosa. Fifteen days old rats received fat emulsions containing triolein or [1,1,1-(13)C]-Tri-C8:0 and a specific inhibitor of preduodenal lipase, 5-(2-(benzyloxy)ethoxy)-3-(3-phenoxyphenyl)-1,3,4-oxadiazol-2(3H)-one or BemPPOX. The fate of the (13)C-C8:0 was followed in rat tissues after 30 and 120min of digestion and octanoylated ghrelin was measured in the plasma. This work (1) demonstrates that part of C8:0 coming from Tri-C8:0 is directly absorbed at the gastric level, (2) allows the estimation of C8:0 gastric absorption level (1.3% of the (13)C-C8:0 in sn-3 position after 30min of digestion), as well as (3) the contribution of rat lingual lipase to total lipolysis and to duodenal absorption of dietary FAs (at least 30%), (4) shows no short-term effect of dietary Tri-C8:0 consumption and subsequent increase of C8:0 gastric tissue content on plasma octanoylated ghrelin concentration. PMID:27317984

  4. A two-phase theoretical study of Al2O3-water nano-fluid flow inside a concentric pipe with heat generation/absorption

    International Nuclear Information System (INIS)

    Convective heat transfer and pressure drop characteristics of Al2O3-water nano-fluid inside a concentric pipe with constant heat flux boundary conditions at the both walls is investigated theoretically. The employed model for nano-fluid includes the two-phase modified Buongiorno model that fully accounts for the effects of nanoparticle volume fraction distribution. Due to the nanoparticles migration in the fluid, the no-slip condition of the fluid-solid interface at the pipe walls is abandoned in favor of a slip condition which appropriately represents the non-equilibrium region near the interface. Governing equations were transformed into a system of ordinary ones via the similarity variables and solved numerically. The effects of heat generation/absorption σ, slip parameter λ, and heat flux ratio e on nanoparticle volume fraction, velocity, temperature, heat transfer coefficient at both walls, and the dimensionless pressure gradient have been investigated in detail. The results obtained indicated that the nanoparticles move from the wall with higher heating energy towards the wall with lower heating energy (along the temperature gradient) due to the thermo-phoretic force. This non-uniform distribution of nanoparticles at the cross section of the pipe, pushes the peak of the axial velocity from the wall with lower heating energy towards the wall with higher heating energy. In addition, slip velocity at the pipe walls enhances heat transfer coefficient and increase the dimensionless pressure gradient ratio. Moreover, the changes of the heat transfer coefficient enhancement in the case of heat generation is much more that in the case of heat absorption, for low values of ratio of Brownian diffusivity to thermo-phoretic diffusivities NBT. (authors)

  5. Impact of thermal and organic acid treatment of feed on apparent ileal mineral absorption, tibial and liver mineral concentration, and tibia quality in broilers.

    Science.gov (United States)

    Hafeez, A; Mader, A; Boroojeni, F Goodarzi; Ruhnke, I; Röhe, I; Männer, K; Zentek, J

    2014-07-01

    Minerals play an important role for growth and bone stability in broilers. Thermal treatment and inclusion of organic acids in feed may affect the mineral absorption and tibial quality in broilers. The study was conducted to investigate the effect of thermal processing of feed including pelleting (P), long-term conditioning at 85°C (L), and expanding at 130°C (E) without and with 1.5% of an acid mixture containing 64% formic and 25% propionic acid on the apparent ileal absorption (AIA) of calcium, phosphorus, magnesium, potassium, sodium, iron, copper, manganese, and zinc, their concentrations in liver and tibia, as well as various tibial quality parameters in broilers. In total, 480 one-day-old Cobb broiler chicks were assigned using a completely randomized design with a 3 × 2 factorial arrangement. The ileal digesta, liver, and tibia were collected at d 35. The AIA of calcium and sodium was improved in group E compared with L (P ≤ 0.02 and P ≤ 0.01). Group P and E showed higher AIA for potassium than L (P ≤ 0.01). Bone ash content was increased in group E compared with L (P ≤ 0.04). The BW to bone weight ratio was lower and tibial zinc content was higher in group P compared with E (P ≤ 0.05). Tibial iron content was higher in group L than E (P ≤ 0.03). Acid addition did not affect AIA, mineral content in tibia, or tibial quality parameters. Thermal and acid treatment did not affect mineral concentrations in the liver, except an inconsistent interaction effect for DM content and sodium (P ≤ 0.03 and P ≤ 0.04, respectively). In conclusion, long-term thermal treatment reduced AIA of some minerals compared with short-term thermal treatments, but had no impact on tibia composition. Acid inclusion had no effect on AIA of minerals and tibia quality. Thermal treatment and the use of organic acids can therefore be considered as safe with regard to their impact on bone development in broilers. PMID:24864282

  6. DNA-Conjugated Organic Chromophores in DNA Stacking Interactions

    DEFF Research Database (Denmark)

    Filichev, Vyacheslav V.; Pedersen, Erik Bjerregaard

    2009-01-01

    Since the discovery of the intercalation of acridine derivatives into DNA (1961), chemists have synthesized many intercalators tethered to DNA. Advances in the chemical synthesis of modified nucleosides along with progress in oligonucleotide synthesis have made it possible to introduce organic...... review presents those efforts in the design of intercalators/organic chromophores as oligonucleotide conjugates that form a foundation for the generation of novel nucleic acid architectures...

  7. Modulated imaging: a novel method for quantifying tissue chromophores in evolving cerebral ischemia

    Science.gov (United States)

    Abookasis, David; Mathews, Marlon S.; Lay, Chistopher; Frostig, Ron D.; Tromberg, Bruce J.

    2007-03-01

    The authors report the results of utilizing spatially-modulated near infrared light using Modulated Imaging (MI) technology in imaging cerebral ischemia. MI images of the left parietal somatosensory cortex were obtained post-occlusion and up to three hours following middle cerebral artery occlusion. Tissue chromophore maps were obtained to demonstrate spatiotemporal changes in the distribution of oxy, deoxy, total hemoglobin, and oxygen saturation. MI recorded a decrease in oxyhemoglobin concentration and tissue oxygen saturation and increase in tissue deoxyhemoglobin concentration following occlusion. Optical intrinsic signal was used to detect functional activation of the somatosensory barrel cortex to whisker stimulation. This activation was completely lost following occlusion. Imaging findings in a transient ischemic attack using photothrombosis is also demonstrated.

  8. Preparation and third-order nonlinear optical property of poly(urethane-imide containing dispersed red chromophore

    Directory of Open Access Journals (Sweden)

    2008-11-01

    Full Text Available A novel poly(urethane-imide (PUI containing dispersed red chromophore was synthesized. The PUI was characterized by FT-IR, UV-Vis, DSC and TGA. The results of DSC and TGA indicated that the PUI exhibited high thermal stability up to its glass-transition temperature (Tg of 196°C and 5% heat weight loss temperature of 229°C. According to UV-Vis spectrum and working curve, the maximum molar absorption coefficient and absorption wavelength were measured. They were used to calculate the third-order nonlinear optical coefficient χ(3. At the same time, the chromophore density of PUI, nonlinear refractive index coefficient and molecular hyperpolarizability of PUI were obtained. The fluorescence spectra of PUI and model compound DR-19 were determined at excitation wavelength 300 nm. The electron donor and acceptor in polymer formed the exciplex through the transfer of the electric charges. The results show that the poly(urethane-imide is a promising candidate for application in optical devices.

  9. Femtosecond dynamics in the lactim tautomer of phycocyanobilin: a long-wavelength absorbing model compound for the phytochrome chromophore.

    Science.gov (United States)

    Singer, Patrick; Fey, Sonja; Göller, Andreas H; Hermann, Gudrun; Diller, Rolf

    2014-12-01

    Transient UV/Vis absorption spectroscopy is used to study the primary dynamics of the ring-A methyl imino ether of phycocyanobilin (PCB-AIE), which was shown to mimic the far-red absorbance of the Pfr chromophore in phytochromes (R. Micura, K. Grubmayr, Bioorg. Med. Chem. Lett.- 1994, 4, 2517-2522). After excitation at 615 nm, the excited electronic state is found to decay with τ1 =0.4 ps followed by electronic ground-state relaxation with τ2 =1.2 and τ3 =6.7 ps. Compared with phycocyanobilin (PCB), the initial kinetics of PCB-AIE is much faster. Thus, the lactim structure of PCB-AIE seems to be a suitable model that could not only explain the bathochromic shift in the ground-state absorption but also the short reaction of the Pfr as compared to the Pr chromophore in phytochrome. In addition, the equivalence of ring-A and ring-D lactim tautomers with respect to a red-shifted absorbance relative to the lactam tautomers is demonstrated by semiempirical calculations. PMID:25196062

  10. Supramolecular Packing Controls H₂ Photocatalysis in Chromophore Amphiphile Hydrogels.

    Science.gov (United States)

    Weingarten, Adam S; Kazantsev, Roman V; Palmer, Liam C; Fairfield, Daniel J; Koltonow, Andrew R; Stupp, Samuel I

    2015-12-01

    Light harvesting supramolecular assemblies are potentially useful structures as components of solar-to-fuel conversion materials. The development of these functional constructs requires an understanding of optimal packing modes for chromophores. We investigated here assembly in water and the photocatalytic function of perylene monoimide chromophore amphiphiles with different alkyl linker lengths separating their hydrophobic core and the hydrophilic carboxylate headgroup. We found that these chromophore amphiphiles (CAs) self-assemble into charged nanostructures of increasing aspect ratio as the linker length is increased. The addition of salt to screen the charged nanostructures induced the formation of hydrogels and led to internal crystallization within some of the nanostructures. For linker lengths up to seven methylenes, the CAs were found to pack into 2D crystalline unit cells within ribbon-shaped nanostructures, whereas the nine methylene CAs assembled into long nanofibers without crystalline molecular packing. At the same time, the different molecular packing arrangements after charge screening led to different absorbance spectra, despite the identical electronic properties of all PMI amphiphiles. While the crystalline CAs formed electronically coupled H-aggregates, only CAs with intermediate linker lengths showed evidence of high intermolecular orbital overlap. Photocatalytic hydrogen production using a nickel-based catalyst was observed in all hydrogels, with the highest turnovers observed for CA gels having intermediate linker lengths. We conclude that the improved photocatalytic performance of the hydrogels formed by supramolecular assemblies of the intermediate linker CA molecules likely arises from improved exciton splitting efficiencies due to their higher orbital overlap. PMID:26593389

  11. Supramolecular clippers for controlling photophysical processes through preorganized chromophores.

    Science.gov (United States)

    Kumar, Mohit; Ushie, Onumashi Afi; George, Subi J

    2014-04-22

    A novel supramolecular clipping design for influencing the photophysical properties of functional molecular assemblies, by the preorganization (clipping) of chromophores, is described. Several chromophores end functionalized with molecular recognition units were designed. These molecular recognition units serve as handles to appropriately position these systems upon noncovalent interactions with multivalent guest molecules (supramolecular clippers). Towards this goal, we have synthesized 1,5-dialkoxynaphthalene (DAN) and naphthalenediimide (NDI) functionalized with dipicolylethylenediamine (DPA) motifs. These molecules could preorganize upon noncovalent clipping with adenosine di- or triphosphates, which resulted in preassociated excimers and mixed (cofacial) charge-transfer (CT) assemblies. Chiral guest binding could also induce supramolecular chirality, not only into the individual chromophoric assembly but also into the heteromeric CT organization, as seen from the strong circular dichroism (CD) signal of the CT transition. The unique ability of this design to influence the intermolecular interactions by changing the binding strength of the clippers furthermore makes it very attractive for controlling the bimolecular photophysical processes. PMID:24623564

  12. Photophysical diversity of two novel cyanobacteriochromes with phycocyanobilin chromophores: photochemistry and dark reversion kinetics.

    Science.gov (United States)

    Chen, Yu; Zhang, Juan; Luo, Juan; Tu, Jun-Ming; Zeng, Xiao-Li; Xie, Jie; Zhou, Ming; Zhao, Jing-Quan; Scheer, Hugo; Zhao, Kai-Hong

    2012-01-01

    Cyanobacteriochromes are phytochrome homologues in cyanobacteria that act as sensory photoreceptors. We compare two cyanobacteriochromes, RGS (coded by slr1393) from Synechocystis sp. PCC 6803 and AphC (coded by all2699) from Nostoc sp. PCC 7120. Both contain three GAF (cGMP phosphodiesterase, adenylyl cyclase and FhlA protein) domains (GAF1, GAF2 and GAF3). The respective full-length, truncated and cysteine point-mutated genes were expressed in Escherichia coli together with genes for chromophore biosynthesis. The resulting chromoproteins were analyzed by UV-visible absorption, fluorescence and circular dichroism spectroscopy as well as by mass spectrometry. RGS shows a red-green photochromism (λ(max) = 650 and 535 nm) that is assigned to the reversible 15Z/E isomerization of a single phycocyanobilin-chromophore (PCB) binding to Cys528 of GAF3. Of the three GAF domains, only GAF3 binds a chromophore and the binding is autocatalytic. RGS autophosphorylates in vitro; this reaction is photoregulated: the 535 nm state containing E-PCB was more active than the 650 nm state containing Z-PCB. AphC from Nostoc could be chromophorylated at two GAF domains, namely GAF1 and GAF3. PCB-GAF1 is photochromic, with the proposed 15E state (λ(max) = 685 nm) reverting slowly thermally to the thermostable 15Z state (λ(max)  = 635 nm). PCB-GAF3 showed a novel red-orange photochromism; the unstable state (putative 15E, λ(max) = 595 nm) reverts very rapidly (τ ~ 20 s) back to the thermostable Z state (λ(max) = 645 nm). The photochemistry of doubly chromophorylated AphC is accordingly complex, as is the autophosphorylation: E-GAF1/E-GAF3 shows the highest rate of autophosphorylation activity, while E-GAF1/Z-GAF3 has intermediate activity, and Z-GAF1/Z-GAF3 is the least active state. PMID:22008418

  13. Estimation of the contribution of chromophoric dissolved organic matter to total light absorption by remote sensing in Lake Taihu%太湖有色溶解有机物对水体总吸收贡献的遥感估算

    Institute of Scientific and Technical Information of China (English)

    姜广甲; 马荣华; 段洪涛

    2012-01-01

    Chromophnric dissolved organic matter (CDOM) mainly absorbs light in water which may influence the nature water color in lakes. Its absorption and photochemical degradation products play an important role in the primary productivity of water and carbon cycle. In Lake Taihu, a total of 333 sites were sampled in October 2004, October 2008 , April 2010 and January and March 2011 to analyze the contribution of CDOM to tolal light absorption und estimate [aCDOM/a1] (412 ) from remote sensing. It was found that the average of [ Ocdom/a1] (412) exhibited highly temporal variations during the five cruises. The maximum (0. 369) was determined in 2011 , comparing with all samples in Lake Taihu (0. 295 ±0. 139). The minimum average of [aCDOM\\a1] (412) in the dalaset 201004 was 0. 236 ± 0. 108 , varing from 0.046 to 0.455. No significant difference was observed in the data-set 200410 and 200810. The mean of [aCDOM/a1 ] ( 412) in Zhushan Bay was higher than that in both whole Lake Taihu and Meil lang Bay, For Meiliang Bay, it had almost the same value with the whole lake. A multi-band algorithm was adopted to estimate the [aCDOM/a1] (412) by remote sensing and acceptable results were detected (n =333, RMSE = 34. 60% ). Suspended sediments and pigments had an important impact on determination of [aCDOM/a1] (412) from remote sensing. It was underestimated because of pigments and overestimated as the suspended sediments in water and the latter was worse. Tile results also showed that the CDOM and detritus optically dominate thp water color in Lake Taihu.%有色溶解有机物(CDOM)是决定自然水体水色的主要溶解物质,其吸光能力和光化降解产物对水体初级生产力和碳循环过程具有重要影响.以太湖为研究区,2004年10月、2008年10月、2010年4月和2011年1月和3月共5期实测数据,采集了333个有效样点,分析不同时期CDOM对水体总吸收的贡献,并利用遥感技术估算[aCDOM/a1](412).结

  14. Thermal modeling of a secondary concentrator integrated with an open direct-absorption molten-salt volumetric receiver in a beam-down tower system

    Science.gov (United States)

    Lahlou, Radia; Armstrong, Peter; Grange, Benjamin; Almheiri, Saif; Calvet, Nicolas; Slocum, Alexander; Shamim, Tariq

    2016-05-01

    An upward-facing three-dimensional secondary concentrator, herein termed Final Optical Element (FOE), is designed to be used in a beam-down tower in combination with an open volumetric direct-absorption molten-salt receiver tank acting simultaneously as a thermal energy storage system. It allows reducing thermal losses from the open receiver by decreasing its aperture area while keeping minimal spillage losses. The FOE is exposed to high solar fluxes, a part of which is absorbed by its reflector material, leading to material degradation by overheating. Consequently, the FOE may require active cooling. A thermal model of the FOE under passive cooling mechanism is proposed as a first step to evaluate its sensitivity to some design parameters. Then, it will be used to evaluate the requirements for the active cooling system. The model provides insights on the FOE thermal behavior and highlights the effectiveness of a design modification on passive cooling enhancement. First prototype tests under reduced flux and with no active cooling will be used for model adjustment.

  15. Novel extraction induced by emulsion breaking as a tool for the determination of trace concentrations of Cu, Mn and Ni in biodiesel by electrothermal atomic absorption spectrometry.

    Science.gov (United States)

    Pereira, Fernanda M; Zimpeck, Renata C; Brum, Daniel M; Cassella, Ricardo J

    2013-12-15

    This work proposes a novel method for the determination of trace concentrations of Cu, Mn and Ni in biodiesel samples by electrothermal atomic absorption spectrometry. In order to overcome problems related to the organic matrix in the direct introduction of the samples, a new extraction approach was investigated. The method was based on the extraction induced by emulsion breaking, in which metals were transferred from the biodiesel to an acid aqueous phase after formation and breaking of a water-in-oil emulsion prepared by mixing the biodiesel sample with an aqueous solution containing surfactant and nitric acid. Several parameters that could influence the performance of the system were evaluated. Quantitative extractions of the analytes were obtained when the extraction was performed using an emulsifier solution containing 2.1 mol L(-1) of HNO3 and 7% m/v of Triton X-100. The extraction time had remarkable influence on the efficiency of the process, being necessary an agitation time of 60 min to achieve maximum extraction. The limits of quantification were below 1 µg L(-1) for the three analytes under study. The accuracy of the method was tested by application of a recovery test (recovery percentages between 89% and 109% were observed) and by comparison with a well-established method, taken as reference. PMID:24209306

  16. Bandgap Engineering in π-Extended Pyrroles. A Modular Approach to Electron-Deficient Chromophores with Multi-Redox Activity.

    Science.gov (United States)

    Zhylitskaya, Halina; Cybińska, Joanna; Chmielewski, Piotr; Lis, Tadeusz; Stępień, Marcin

    2016-09-01

    A family of bandgap-tunable pyrroles structurally related to rylene dyes was computationally designed and prepared using robust, easily scalable chemistry. These pyrroles show highly variable fluorescence properties and can be used as building blocks for the synthesis of electron-deficient oligopyrroles. The latter application is demonstrated through the development of π-extended porphyrins containing naphthalenediamide or naphthalenediimide units. These new macrocycles exhibit simultaneously tunable visible and near-IR absorptions, an ability to accept up to 8 electrons via electrochemical reduction, and high internal molecular free volumes. When chemically reduced under inert conditions, the most electron-deficient of these macrocycles revealed reversible formation of eight charged states, characterized by remarkably red-shifted optical absorptions, extending beyond 2200 nm. Such features make these oligopyrroles of interest as functional chromophores, charge-storage materials, and tectons for crystal engineering. PMID:27533895

  17. A New Class of Organic Luminophores With a stilbene Chromophore: 3-Phenylmethylene-1(3-H) Isobenzofuranones

    Science.gov (United States)

    Nikolov, Peter; Fratev, Filip; Minchev, Stoyan

    1983-02-01

    A new class of luminophores with a stilbene chromophore, 3-phenylmethylene-1(3H)-iso-benzofuranones (BPH's), has been investigated. The fluorescence occurs in the region 26000-16000 cm-1, the maximal quantum yield being about 0.6. As a result of substitution or higher polarity of the solvent the ππ* state of the BPH's separates from the fluorescently inactive nπ* state. The S0-S2 absorption transition of the BPH's results from an excitation which is practically localized in the stilbene fragment. The good linear correlation of the fluorescence and absorption maxima and O-O transitions in ethanol with the σp-Hammett constants has been used for an interpretation of the changes in the potential hyperfaces of S0 and S1 states.

  18. Isotope concentrations from 24-h urine and 3-h serum samples can be used to measure intestinal magnesium absorption in postmenopausal women.

    Science.gov (United States)

    Hansen, Karen E; Nabak, Andrea C; Johnson, Rachael Erin; Marvdashti, Sheeva; Keuler, Nicholas S; Shafer, Martin M; Abrams, Steven A

    2014-04-01

    Studies suggest a link between magnesium status and osteoporosis. One barrier to more conclusive research on the potential relation is measuring intestinal magnesium absorption (MgA), which requires the use of stable isotopes and a ≥6-d stool or 3-d urine collection. We evaluated alternative methods of measuring MgA. We administered 2 stable magnesium isotopes to 15 postmenopausal women (cohort 1) aged 62 ± 8 y with a dietary magnesium intake of 345 ± 72 mg/d. Participants fasted from 1200 h to 0700 h and then consumed breakfast with ∼23 mg of oral ²⁶Mg and ∼11 mg of i.v. ²⁵Mg. We measured magnesium isotope concentrations in 72-h urine, spot urine (36, 48, 60, and 72 h), and spot serum (1, 3, and 5 h) samples collected after isotope dosing. We calculated MgA using the dose-corrected fraction of isotope concentrations from the 72-h urine collection. We validated new methods in 10 postmenopausal women (cohort 2) aged 59 ± 5 y with a dietary magnesium intake of 325 ± 122 mg/d. In cohort 1, MgA based on the 72-h urine collection was 0.28 ± 0.08. The 72-h MgA correlated most highly with 0-24 h urine MgA value alone (ρ = 0.95, P MgA values. In cohort 2, Bland-Altman bias was lowest (-0.003, P = 0.82) using means of the 0-24 h urine and 3-h serum MgA values. We conclude that means of 0-24 h urine and 3-h serum MgA provide a reasonable estimate of 72-h MgA. However, if researchers seek to identify small changes in MgA, we recommend a 3-d urine or extended stool collection. PMID:24500940

  19. Simple hollow fiber renewal liquid membrane extraction method for pre-concentration of Cd(II) in environmental samples and detection by Flame Atomic Absorption Spectrometry

    International Nuclear Information System (INIS)

    A hollow fiber renewal liquid membrane (HFRLM) extraction method to determine cadmium (II) in water samples using Flame Atomic Absorption Spectrometry (FAAS) was developed. Ammonium O,O-diethyl dithiophosphate (DDTP) was used to complex cadmium (II) in an acid medium to obtain a neutral hydrophobic complex (ML2). The organic solvent introduced to the sample extracts this complex from the aqueous solution and carries it over the poly(dimethylsiloxane) (PDMS) membrane, that had their walls previously filled with the same organic solvent. The organic solvent is solubilized inside the PDMS membrane, leading to a homogeneous phase. The complex strips the lumen of the membrane where, at higher pH, the complex Cd-DDTP is broken down and cadmium (II) is released into the stripping phase. EDTA was used to complex the cadmium (II), helping to trap the analyte in the stripping phase. A multivariate procedure was used to optimize the studied variables. The optimized variables were: sample (donor phase) pH 3.25, DDTP concentration 0.05% (m/v), stripping (acceptor phase) pH 8.75, EDTA concentration 1.5 x 10-2 mol L-1, extraction temperature 40 deg. C, extraction time 40 min, a solvent mixture N-butyl acetate and hexane (60/40%, v/v) with a volume of 100 μL, and addition of ammonium sulfate to saturate the sample. The sample volume used was 20 mL and the stripping volume was 165 μL. The analyte enrichment factor was 120, limit of detection (LOD) 1.3 μg L-1, relative standard deviation (RSD) 5.5% and the working linear range 2-30 μg L-1.

  20. Simultaneous determination of antimony and boron in beverage and dairy products by flame atomic absorption spectrometry after separation and pre-concentration by cloud-point extraction.

    Science.gov (United States)

    Altunay, Nail; Gürkan, Ramazan

    2016-01-01

    A new cloud-point extraction (CPE) method was developed for the pre-concentration and simultaneous determination of Sb(III) and B(III) by flame atomic absorption spectrometry (FAAS). The method was based on complexation of Sb(III) and B(III) with azomethine-H in the presence of cetylpyridinium chloride (CPC) as a signal-enhancing agent, and then extraction into the micellar phase of Triton X-114. Under optimised conditions, linear calibration was obtained for Sb(III) and B(III) in the concentration ranges of 0.5-180 and 2.5-600 μg l(-1) with LODs of 0.15 and 0.75 μg l(-1), respectively. Relative standard deviations (RSDs) (25 and 100 μg l(-1) of Sb(III) and B(III), n = 6) were in a range of 2.1-3.8% and 1.9-2.3%, respectively. Recoveries of spiked samples of Sb(III) and B(III) were in the range of 98-103% and 99-102%, respectively. Measured values for Sb and B in three standard reference materials were within the 95% confidence limit of the certified values. Also, the method was used for the speciation of inorganic antimony. Sb(III), Sb(V) and total Sb were measured in the presence of excess boron before and after pre-reduction with an acidic mixture of KI-ascorbic acid. The method was successfully applied to the simultaneous determination of total Sb and B in selected beverage and dairy products.

  1. Multipixel spectral imaging of green fluorescent protein (GFP) in COS-7 cells: folding kinetics and chromophore formation

    Science.gov (United States)

    Greenbaum, Lior; Rothmann, Chana; Hanania, Judith; Malik, Zvi

    2000-12-01

    Spectrally resolved imaging of Green fluorescent protein (GFP) expressed in living COS-7 kidney cells distinguished the subcellular localization and demarcated the processes of protein folding and chromophore formation. COS-7 kidney cells were transfected by a plasmid pEGFP-N1 plasmid followed by incubation for 15 hours for gen expression. At different intervals the cells were examined by fluorescence microscopy and analyzed by a spectral imaging system. After 7 hours, GFP was detected in the cytoplasm, concentrated in a localized form. Spectra of the initial GFP evinced several components that belong both tot he typical fluorescent signal as well as to unspecific fingerprints. At 10 and 15 hours, GFP was seen spread in the cytoplasm as well as in the nucleus, and the specific spectra of the GFP were dominant at the later time. The typical GFP spectral fingerprint is the result of protein folding and chromophore formation following internal oxidation reactions. This folding and chromophore formation process, up to final conformation, was detected by spectral imaging as localized in the nucleus rather than in the cytosol. Thus, the method of fluorescence microscopy combined with multiplex spectral imaging demonstrates distinct biochemical pathways leading to GFP conformation.

  2. Development of a Transnasal Delivery System for Recombinant Human Growth Hormone (rhGH): Effects of the Concentration and Molecular Weight of Poly-L-arginine on the Nasal Absorption of rhGH in Rats.

    Science.gov (United States)

    Kawashima, Ryo; Uchida, Masaki; Yamaki, Tsutomu; Ohtake, Kazuo; Hatanaka, Tomomi; Uchida, Hiroyuki; Ueda, Hideo; Kobayashi, Jun; Morimoto, Yasunori; Natsume, Hideshi

    2016-01-01

    A novel system for delivering recombinant human growth hormone (rhGH) that is noninvasive and has a simple method of administration is strongly desired to improve the compliance of children. The aim of this study was to investigate the potential for the intranasal (i.n.) co-administration of rhGH with poly-L-arginine (PLA) as a novel delivery system by evaluating the effects of the concentration and molecular weight of PLA on the nasal absorption of rhGH. The influence of the formation of insoluble aggregates and a soluble complex in the dosage formulation on nasal rhGH absorption was also evaluated by size-exclusion chromatography and ultrafiltration. PLA enhanced the nasal absorption of rhGH at each concentration and molecular weight examined. Nasal rhGH absorption increased dramatically when the PLA concentration was 1.0 % (w/v) due to the improved solubility of rhGH in the formulation. A delay in rhGH absorption was observed when the molecular weight of PLA was increased. This appeared to be because the increase in molecular weight caused the formation of a soluble complex. It seems that the PLA concentration affects the absorption-enhancing effect on rhGH, while the molecular weight of PLA affects the time when the maximum plasma rhGH concentration was reached (Tmax) of rhGH after i.n. administration, mainly because of the interactions among rhGH, PLA, and additives. Therefore, the transnasal rhGH delivery system using PLA is considered to be a promising alternative to subcutaneous (s.c.) injection if these interactions are sufficiently controlled.

  3. Photoelectrochromism in the Retinal Protonated Schiff Base Chromophore: Photoisomerization Speed and Selectivity under a Homogeneous Electric Field at Different Operational Regimes.

    Science.gov (United States)

    El-Tahawy, Mohsen M T; Nenov, Artur; Garavelli, Marco

    2016-09-13

    The spectral tunability, photoisomerization efficiency and selectivity, of the native all-trans retinal protonated Shiff base (PSB) chromophore driven by a homogeneous electric field is systematically investigated. By analyzing the absorption wavelength dependence, charge distribution, and PES profiles along selected torsional angles, as well as the electronic structure, energetics, and topography of the CI seam in the presence of strong positive and negative electric fields, we recognize the existence of qualitatively/fundamentally different photophysics and photochemistry with respect to the unperturbed (i.e., absence of an electric field) chromophore. We rationalize the findings within the scope of molecular orbital theory and deliver a unified picture of the photophysics of the retinal PSB chromophore over a wide, even beyond the usually observed, spectral regime, ranging from the near-infrared to the ultraviolet absorption energies. This work has a 3-fold impact: a) it accounts for, and extends, previous theoretical studies on the subject; b) it delivers a rationale for the ES lifetimes observed in retinal proteins, both archeal and visual rhodopsins, as well as in solvent; and c) the transferability of the discovered trends on PSB mimics is demonstrated. PMID:27494352

  4. Mo, Mn and La doped TiO{sub 2}: Synthesis, characterization and photocatalytic activity for the decolourization of three different chromophoric dyes

    Energy Technology Data Exchange (ETDEWEB)

    Umar, K.; Haque, M.M. [Department of Chemistry, Aligarh Muslim University, Aligarh 202 002 (India); Muneer, M., E-mail: readermuneer@gmail.com [Department of Chemistry, Aligarh Muslim University, Aligarh 202 002 (India); Harada, T.; Matsumura, M. [Research Center for Solar Energy Chemistry, Osaka University, 1-3 Machikaneyama, Toyonaka 560-8531 (Japan)

    2013-11-25

    Highlights: •Detail study on synthesis, characterization and photocatalytic activity of doped-TiO{sub 2}. •SEM images indicates partial crystalline nature with rough surfaces. •The XRD analysis shows the partial crystalline nature and anatase phase. •The UV–Vis absorption spectra showed λ{sub max} shift towards longer wavelength. •TiO{sub 2} with dopant 0.75% (Mo), 1.0% (Mn, La) showed best photocatalytic efficiency. -- Abstract: Nanocrystalline TiO{sub 2} particles doped with different concentrations of Molybdenum (Mo), Manganese (Mn) and Lanthanum (La) (0.25–1.0%) were synthesized using sol–gel method and characterized by standard analytical techniques such as X-ray diffraction (XRD), UV–Vis spectroscopy and Scanning Electron Microscopy (SEM). The XRD analysis shows the partial crystalline nature and anatase phase. The SEM images of undoped and doped TiO{sub 2} at different magnifications also show the partial crystalline nature with rough surfaces. The photocatalytic activity of the synthesized particles (TiO{sub 2} doped with Mo, Mn and La) was tested by studying the decolourization of three different chromophoric dyes such as Acid Red 88 (azo dye), Gentian Violet (triphenylmethane dye) and Remazol Brilliant Blue R (anthraquinone dye) as a function of time on irradiation in aqueous suspension in an immersion well photochemical reactor with a 500 W halogen linear lamp in the presence of atmospheric oxygen. The results indicate that TiO{sub 2} with dopant concentration of 0.75% (Mo) and 1.0% (Mn, La) showed the highest photocatalytic activity as compared to the other dopant concentrations for the decolourization of all the dyes.

  5. An investigation of electronic structure and properties of new chromophore: 3,3'-bithiazolo[3,4-a]pyridinium perchlorate

    Energy Technology Data Exchange (ETDEWEB)

    Liu Shixia [Departement fuer Chemie und Biochemie, Universitaet Bern, Freiestrasse 3, CH-3012 Bern (Switzerland)]. E-mail: liu@iac.unibe.ch; Tanner, Christian [Departement fuer Chemie und Biochemie, Universitaet Bern, Freiestrasse 3, CH-3012 Bern (Switzerland); Leutwyler, Samuel [Departement fuer Chemie und Biochemie, Universitaet Bern, Freiestrasse 3, CH-3012 Bern (Switzerland); Bigler, Peter [Departement fuer Chemie und Biochemie, Universitaet Bern, Freiestrasse 3, CH-3012 Bern (Switzerland); Decurtins, Silvio [Departement fuer Chemie und Biochemie, Universitaet Bern, Freiestrasse 3, CH-3012 Bern (Switzerland)

    2007-01-15

    The chromophore 3,3'-bithiazolo[3,4-a]pyridinium 1, obtained by oxidative cyclization reactions using a tetrathiafulvalene as a leaving group, strongly absorbs at the violet end of the visible region as evidenced by its yellow color. The solution (MeCN) spectrum displays an intensive, broad absorption band around 377 nm with a {epsilon} value of 8x10{sup 3} l mol{sup -1} cm{sup -1}. The chromophore also shows a strongly Stokes-shifted fluorescence emission with a lifetime {tau} of 2.8{+-}0.1 ns in acetonitrile solution. Herein, we describe the photophysical properties and a theoretical investigation of the electronic structure of the chiral dicationic, bis(bicyclic) ring assembly 1.

  6. trans and cis Chromophore structures in the kindling fluorescent protein asFP595

    Science.gov (United States)

    Grigorenko, Bella; Savitsky, Alexander; Topol, Igor; Burt, Stanley; Nemukhin, Alexander

    2006-06-01

    The ab initio QM/MM calculations are used to optimize geometry configurations of the chromophore and surrounding residues for the kindling protein asFP595. The time-dependent DFT method is applied to estimate parameters of the S 0-S 1 vertical transition of the chromophore at the protein geometry taking into account effects from the nearest residues. The results of simulations provide a theoretical support to the hypothesis on the possibility of trans-cis izomerization of the chromophore in the mechanism of kindling. The system can absorb light in the trans anion form of the chromophore and emit at longer wavelength in the cis anion form.

  7. Analysis of an algebraic model for the chromophore vibrations of CF$_3$CHFI

    CERN Document Server

    Jung, C; Taylor, H S

    2004-01-01

    We extract the dynamics implicit in an algebraic fitted model Hamiltonian for the hydrogen chromophore's vibrational motion in the molecule $CF_3CHFI$. The original model has 4 degrees of freedom, three positions and one representing interbond couplings. A conserved polyad allows the reduction to 3 degrees of freedom. For most quantum states we can identify the underlying motion that when quantized gives the said state. Most of the classifications, identifications and assignments are done by visual inspection of the already available wave function semiclassically transformed from the number representation to a representation on the reduced dimension toroidal configuration space corresponding to the classical action and angle variables. The concentration of the wave function density to lower dimensional subsets centered on idealized simple lower dimensional organizing structures and the behavior of the phase along such organizing centers already reveals the atomic motion. Extremely little computational work is...

  8. Photoresponsive Block Copolymers Containing Azobenzenes and Other Chromophores

    Directory of Open Access Journals (Sweden)

    Takaomi Kobayashi

    2010-01-01

    Full Text Available Photoresponsive block copolymers (PRBCs containing azobenzenes and other chromophores can be easily prepared by controlled polymerization. Their photoresponsive behaviors are generally based on photoisomerization, photocrosslinking, photoalignment and photoinduced cooperative motions. When the photoactive block forms mesogenic phases upon microphase separation of PRBCs, supramolecular cooperative motion in liquid-crystalline PRBCs enables them to self-organize into hierarchical structures with photoresponsive features. This offers novel opportunities to photocontrol microphase-separated nanostructures of well-defined PRBCs and extends their diverse applications in holograms, nanotemplates, photodeformed devices and microporous films.

  9. Syntheses and properties of two-dimensional charged nonlinear optical chromophores incorporating redox-switchable cis-tetraammineruthenium(II) centers.

    Science.gov (United States)

    Coe, Benjamin J; Harris, James A; Jones, Lathe A; Brunschwig, Bruce S; Song, Kai; Clays, Koen; Garín, Javier; Orduna, Jesús; Coles, Simon J; Hursthouse, Michael B

    2005-04-01

    In this article, we describe a series of new complex salts in which electron-donating cis-{Ru(II)(NH3)(4)}(2+) centers are connected to two electron-accepting N-methyl/aryl-pyridinium groups. These V-shaped complexes contain either monodentate 4,4'-bipyridyl-derived ligands or related chelates based on 2,2':4,4":4',4'''-quaterpyridyl and have been characterized by using various techniques including electronic absorption spectroscopy and cyclic voltammetry. Molecular quadratic nonlinear optical (NLO) responses beta have been determined by using hyper-Rayleigh scattering at 800 nm and also via Stark (electroabsorption) spectroscopic studies on the intense, visible d --> pi metal-to-ligand charge-transfer bands. These experiments reveal that these dipolar pseudo-C(2v)chromophores exhibit two substantial components of the beta tensor, beta(zzz)and beta(zyy), with the difference between them being most marked for the nonchelated systems. Time-dependent density-functional theory and finite field calculations serve to further illuminate the electronic structures and associated linear and NLO properties of the new chromophoric salts. PMID:15796549

  10. Electron-transfer sensitization of H2 oxidation and CO2 reduction catalysts using a single chromophore.

    Science.gov (United States)

    La Porte, Nathan T; Moravec, Davis B; Hopkins, Michael D

    2014-07-01

    Energy-storing artificial-photosynthetic systems for CO2 reduction must derive the reducing equivalents from a renewable source rather than from sacrificial donors. To this end, a homogeneous, integrated chromophore/two-catalyst system is described that is thermodynamically capable of photochemically driving the energy-storing reverse water-gas shift reaction (CO2 + H2 → CO + H2O), where the reducing equivalents are provided by renewable H2. The system consists of the chromophore zinc tetraphenylporphyrin (ZnTPP), H2 oxidation catalysts of the form [Cp(R)Cr(CO)3](-), and CO2 reduction catalysts of the type Re(bpy-4,4'-R2)(CO)3Cl. Using time-resolved spectroscopic methods, a comprehensive mechanistic and kinetic picture of the photoinitiated reactions of mixtures of these compounds has been developed. It has been found that absorption of a single photon by broadly absorbing ZnTPP sensitizes intercatalyst electron transfer to produce the substrate-active forms of each. The initial photochemical step is the heretofore unobserved reductive quenching of the low-energy T1 state of ZnTPP. Under the experimental conditions, the catalytically competent state decays with a second-order half-life of ∼15 μs, which is of the right magnitude for substrate trapping of sensitized catalyst intermediates. PMID:24961370

  11. Probing the Photodynamics of Rhodopsins with Reduced Retinal Chromophores.

    Science.gov (United States)

    Manathunga, Madushanka; Yang, Xuchun; Luk, Hoi Ling; Gozem, Samer; Frutos, Luis Manuel; Valentini, Alessio; Ferrè, Nicolas; Olivucci, Massimo

    2016-02-01

    While the light-induced population dynamics of different photoresponsive proteins has been investigated spectroscopically, systematic computational studies have not yet been possible due to the phenomenally high cost of suitable high level quantum chemical methods and the need of propagating hundreds, if not thousands, of nonadiabatic trajectories. Here we explore the possibility of studying the photodynamics of rhodopsins by constructing and investigating quantum mechanics/molecular mechanics (QM/MM) models featuring reduced retinal chromophores. In order to do so we use the sensory rhodopsin found in the cyanobacterium Anabaena PCC7120 (ASR) as a benchmark system. We find that the basic mechanistic features associated with the excited state dynamics of ASR QM/MM models are reproduced using models incorporating a minimal (i.e., three double-bond) chromophore. Furthermore, we show that ensembles of nonadiabatic ASR trajectories computed using the same abridged models replicate, at both the CASPT2 and CASSCF levels of theory, the trends in spectroscopy and lifetimes estimated using unabridged models and observed experimentally at room temperature. We conclude that a further expansion of these studies may lead to low-cost QM/MM rhodopsin models that may be used as effective tools in high-throughput in silico mutant screening. PMID:26640959

  12. Recovery of red fluorescent protein chromophore maturation deficiency through rational design.

    Directory of Open Access Journals (Sweden)

    Matthew M Moore

    Full Text Available Red fluorescent proteins (RFPs derived from organisms in the class Anthozoa have found widespread application as imaging tools in biological research. For most imaging experiments, RFPs that mature quickly to the red chromophore and produce little or no green chromophore are most useful. In this study, we used rational design to convert a yellow fluorescent mPlum mutant to a red-emitting RFP without reverting any of the mutations causing the maturation deficiency and without altering the red chromophore's covalent structure. We also created an optimized mPlum mutant (mPlum-E16P that matures almost exclusively to the red chromophore. Analysis of the structure/function relationships in these proteins revealed two structural characteristics that are important for efficient red chromophore maturation in DsRed-derived RFPs. The first is the presence of a lysine residue at position 70 that is able to interact directly with the chromophore. The second is an absence of non-bonding interactions limiting the conformational flexibility at the peptide backbone that is oxidized during red chromophore formation. Satisfying or improving these structural features in other maturation-deficient RFPs may result in RFPs with faster and more complete maturation to the red chromophore.

  13. Changes in ruminal volatile fatty acid production and absorption rate during the dry period and early lactation as affected by rate of increase of concentrate allowance.

    Science.gov (United States)

    Dieho, K; Dijkstra, J; Schonewille, J T; Bannink, A

    2016-07-01

    The aim of the present experiment was to study changes in volatile fatty acid (VFA) production using an isotope dilution technique, and changes in VFA fractional absorption rate (kaVFA) using a buffer incubation technique (BIT) during the dry period and early lactation, as affected by the postpartum (pp) rate of increase of concentrate allowance. The current results are complementary to previously reported changes on rumen papillae morphology from the same experiment. From 50 d antepartum to 80 d pp, VFA production rate was measured 5 times and kaVFA was measured 10 times in 12 rumen-cannulated Holstein Friesian cows. Cows had free access to a mixed ration, consisting of grass and corn silage, soybean meal, and (dry period only) chopped straw. Treatment consisted of either a rapid (RAP; 1.0 kg of DM/d; n=6) or gradual (GRAD; 0.25 kg of DM/d; n=6) increase of concentrate allowance (up to 10.9 kg of DM/d), starting at 4 d pp, aimed at creating a contrast in rumen-fermentable organic matter intake. For the BIT, rumen contents were evacuated, the rumen washed, and a standardized buffer fluid introduced [120 mM VFA, 60% acetic (Ac), 25% propionic (Pr), and 15% butyric (Bu) acid; pH 5.9 and Co-EDTA as fluid passage marker]. For the isotope dilution technique, a pulse-dose of (13)C-labeled Ac, Pr, and Bu and Co-EDTA as fluid passage marker was infused. The rate of total VFA production was similar between treatments and was 2 times higher during the lactation (114 mol/d) than the dry period (53 mol/d). Although papillae surface area at 16, 30, and 44 d pp was greater in RAP than GRAD, Bu and Ac production at these days did not differ between RAP and GRAD, whereas at 16 d pp RAP produced more Pr than GRAD. These results provide little support for the particular proliferative effects of Bu on papillae surface area. Similar to developments in papillae surface area in the dry period and early lactation, the kaVFA (per hour), measured using the BIT, decreased from 0.45 (Ac), 0

  14. Binding, tuning and mechanical function of the 4-hydroxy-cinnamic acid chromophore in photoactive yellow protein

    NARCIS (Netherlands)

    Horst, M.A. van der; Arents, J.C.; Kort, R.; Hellingwerf, K.J.

    2007-01-01

    The bacterial photoreceptor protein photoactive yellow protein (PYP) covalently binds the chromophore 4-hydroxy coumaric acid, tuning (spectral) characteristics of this cofactor. Here, we study this binding and tuning using a combination of pointmutations and chromophore analogs. In all photosensor

  15. Primary Role of the Chromophore Bond Length Alternation in Reversible Photoconversion of Red Fluorescence Proteins

    Science.gov (United States)

    Drobizhev, Mikhail; Hughes, Thomas E.; Stepanenko, Yuriy; Wnuk, Pawel; O'Donnell, Kieran; Scott, J. Nathan; Callis, Patrik R.; Mikhaylov, Alexander; Dokken, Leslie; Rebane, Aleksander

    2012-01-01

    Rapid photobleaching of fluorescent proteins can limit their use in imaging applications. The underlying kinetics is multi-exponential and strongly depends on the local chromophore environment. The first, reversible, step may be attributed to a rotation around one of the two exocyclic C-C bonds bridging phenol and imidazolinone groups in the chromophore. However it is not clear how the protein environment controls this motion - either by steric hindrances or by modulating the electronic structure of the chromophore through electrostatic interactions. Here we study the first step of the photobleaching kinetics in 13 red fluorescent proteins (RFPs) with different chromophore environment and show that the associated rate strongly correlates with the bond length alternation (BLA) of the two bridge bonds. The sign of the BLA appears to determine which rotation is activated. Our results present experimental evidence for the dominance of electronic effects in the conformational dynamics of the RFP chromophore. PMID:23008753

  16. Primary Role of the Chromophore Bond Length Alternation in Reversible Photoconversion of Red Fluorescence Proteins

    Science.gov (United States)

    Drobizhev, Mikhail; Hughes, Thomas E.; Stepanenko, Yuriy; Wnuk, Pawel; O'Donnell, Kieran; Scott, J. Nathan; Callis, Patrik R.; Mikhaylov, Alexander; Dokken, Leslie; Rebane, Aleksander

    2012-09-01

    Rapid photobleaching of fluorescent proteins can limit their use in imaging applications. The underlying kinetics is multi-exponential and strongly depends on the local chromophore environment. The first, reversible, step may be attributed to a rotation around one of the two exocyclic C-C bonds bridging phenol and imidazolinone groups in the chromophore. However it is not clear how the protein environment controls this motion - either by steric hindrances or by modulating the electronic structure of the chromophore through electrostatic interactions. Here we study the first step of the photobleaching kinetics in 13 red fluorescent proteins (RFPs) with different chromophore environment and show that the associated rate strongly correlates with the bond length alternation (BLA) of the two bridge bonds. The sign of the BLA appears to determine which rotation is activated. Our results present experimental evidence for the dominance of electronic effects in the conformational dynamics of the RFP chromophore.

  17. Molecular hyperpolarizabilities of push–pull chromophores: A comparison between theoretical and experimental results

    Energy Technology Data Exchange (ETDEWEB)

    Capobianco, A. [Dipartimento di Fisica E.R. Caianiello, Università di Salerno, via ponte don Melillo, I-84084 Fisciano (Italy); Centore, R. [Dipartimento di Chimica P. Corradini, Università di Napoli, via Cintia, I-80126 Napoli (Italy); Noce, C. [Dipartimento di Fisica E.R. Caianiello, Università di Salerno, via ponte don Melillo, I-84084 Fisciano (Italy); Peluso, A., E-mail: apeluso@unisa.it [Dipartimento di Chimica e Biologia, Università di Salerno, via ponte don Melillo, I-84084 Fisciano (Italy)

    2013-01-16

    Highlights: ► Electro-optical determined and MP2/DFT computed NLO properties have been compared. ► Significant dependence of dipole moments of elongated NLO chromophores on conformations has been found. ► A thorough comparison between MP2 and DFT/TD-DFT computational approaches has been carried out. ► The two-state model overestimates hyperpolarizability. - Abstract: Electric dipole moments and static first order hyperpolarizabilities of two push–pull molecules with an extended π electron systems have been evaluated at different computational levels and compared with the results of electro-optical absorption measurements, based on the two state model. Calculations show that: (i) the dipole moments of such elongated systems depend significantly on conformation, a thorough conformational search is necessary for a meaningful comparison between theoretical and experimental results; (ii) DFT methods, in particular CAM-B3LYP and M05-2X, yield dipole moments which compare well with those obtained by post Hartree–Fock methods (MP2) and by EOA measurements; (iii) theoretical first order hyperpolarizabilities are largely underestimated, both by MP2 and DFT methods, possibly because of the failure of two state model used in electro-optical measurements.

  18. Near-IR luminescent lanthanide complexes with 1,8-diaminoanthraquinone-based chromophoric ligands.

    Science.gov (United States)

    Stacey, Oliver J; Ward, Benjamin D; Amoroso, Angelo J; Pope, Simon J A

    2016-04-12

    Three new chromophoric anthraquinone-based multidentate ligands have been synthesised in a step-wise manner from 1,8-dichloroanthraquinone. The ligands each comprise two dipicolyl amine units and react with trivalent lanthanide ions to form monometallic complexes of the form [Ln(L)](OTf)3 as indicated by MS studies and elemental analyses. Supporting DFT studies show that the monometallic species are highly favoured (>1000 kJ mol(-1)) over the formation of a 2 : 2 dimetallic congener. Both ligands and complexes absorb light efficiently (ε ∼ 10(4) M(-1) cm(-1)) in the visible part of the spectrum, with λabsca. 535-550 nm through an intramolecular charge transfer (ICT) transition localised on the substituted anthraquinone unit. In all cases the complexes show a fluorescence band at ca. 675 nm due to the ICT emitting state. The corresponding Nd(iii), Yb(iii) and Er(iii) complexes also reveal sensitised near-IR emission characteristic of each ion following excitation of the ICT visible absorption band at 535 nm. PMID:26974664

  19. Effects of Charge Location on the Absorptions and Lifetimes of Protonated Tyrosine Peptides in Vacuo

    DEFF Research Database (Denmark)

    Kelly, O.; Calvert, C.R.; Greenwood, J.B.;

    2012-01-01

    ions had a maximum absorption at ~275 nm. Lifetimes after photoexcitation were found to shorten upon protonation and lengthen upon CE complexation, in accordance with the increased number of degrees of freedom and an increase in activation energies for dissociation as the mobile proton model......Nearby charges affect the electronic energy levels of chromophores, with the extent of the effect being determined by the magnitude of the charge and degree of charge-chromophore separation. The molecular configuration dictates the charge–chromophore distance. Hence, in this study, we aim to assess...... how the location of the charge influences the absorption of a set of model protonated and diprotonated peptide ions, and whether spectral differences are large enough to be identified. The studied ions were the dipeptide YK, the tripeptide KYK (Y = tyrosine; K = lysine) and their complexes with 18...

  20. Changes in ruminal volatile fatty acid production and absorption rate during the dry period and early lactation as affected by rate of increase of concentrate allowance

    NARCIS (Netherlands)

    Dieho, K.; Dijkstra, Jan; Schonewille, J.T.; Bannink, A.

    2016-01-01

    The aim of the present experiment was to study changes in volatile fatty acid (VFA) production using an isotope dilution technique, and changes in VFA fractional absorption rate (k aVFA) using a buffer incubation technique (BIT) during the dry period and early lactation, as affected by

  1. CO concentration and temperature sensor for combustion gases using quantum-cascade laser absorption near 4.7 μm

    KAUST Repository

    Ren, Wei

    2012-05-25

    A sensor for sensitive in situ measurements of carbon monoxide and temperature in combustion gases has been developed using absorption transitions in the (v′ = 1 ← v″ = 0) and (v′ = 2 ← v″ = 1) fundamental bands of CO. Recent availability of mid-infrared quantum-cascade (QC) lasers provides convenient access to the CO fundamental band near 4.7 μm, having approximately 104 and 102 times stronger absorption line-strengths compared to the overtone bands near 1.55 μm and 2.3 μm used previously to sense CO in combustion gases. Spectroscopic parameters of the selected transitions were determined via laboratory measurements in a shock tube over the 1100-2000 K range and also at room temperature. A single-laser absorption sensor was developed for accurate CO measurements in shock-heated gases by scanning the line pair v″ = 0, R(12) and v″ = 1, R(21) at 2.5 kHz. To capture the rapidly varying CO time-histories in chemical reactions, two different QC lasers were then used to probe the line-center absorbance of transitions v″ = 0, P(20) and v″ = 1, R(21) with a bandwidth of 1 MHz using fixed-wavelength direct absorption. The sensor was applied in successful shock tube measurements of temperature and CO time-histories during the pyrolysis and oxidation of methyl formate, illustrating the capability of this sensor for chemical kinetic studies. © 2012 Springer-Verlag.

  2. Resonance energy transfer from organic chromophores to fullerene molecules

    Science.gov (United States)

    Liu, Yu-Xiang; Summers, Melissa A.; Scully, Shawn R.; McGehee, Michael D.

    2006-05-01

    The mechanism of charge separation in polymeric bulk heterojunction photovoltaic cells is usually described as electron transfer from the absorbing polymer to an electron acceptor material such as (6,6)-phenyl C61 butyric acid methyl ester (PCBM). We consider the possibility of energy transfer to PCBM as another potential mechanism for charge separation. We demonstrate resonance energy transfer from a red-emitting organic chromophore (Nile red) to PCBM and measure a Förster radius of 3.1 nm. Using standard Förster energy transfer theory, we calculate a Förster radius (R0) of around 2.7 nm for this donor-acceptor pair in polystyrene. Nile red has a similar emission spectrum to commonly used conjugated polymers used in polymer/PCBM photovoltaic cells. We consider the implications of an energy transfer mechanism on the design requirements for future photovoltaic cells.

  3. Development and Characterization of Reactive Triangulenium Chromophores for Bioconjugation Applications

    DEFF Research Database (Denmark)

    Bora, Ilkay

    With the continuing development of advanced fluorescence techniques such as single-molecule fluorescence, time-gated detection, multiple laser pulse excitation, anisotropy decay assays and quenching experiments, fluorescent dyes are needed whose focus does not only lie on classic emission amplitude.......66 in acetonitrile. Their saliently high lifetimes of up to 23 ns in acetonitrile allow for autofluorescence eliminating time-gated measurements; combined with their strongly polarized transitions they enable the measurement of slow protein dynamics. Synthetic strategies developed by Laursen and Krebs allow...... maleimides were introduced into the azadioxa- and diazaoxa-triangulenium chromophores. The effect of the linker rigidity on the local mobility of the fluorophore on protein surfaces and the resulting retardation of initial emission anisotropy loss in time-resolved experiments were then investigated...

  4. Spatiotemporal variations in the abundance and composition of bulk and chromophoric dissolved organic matter in seasonally hypoxia-influenced Green Bay, Lake Michigan, USA.

    Science.gov (United States)

    DeVilbiss, Stephen E; Zhou, Zhengzhen; Klump, J Val; Guo, Laodong

    2016-09-15

    Green Bay, Lake Michigan, USA, is the largest freshwater estuary in the Laurentian Great Lakes and receives disproportional terrestrial inputs as a result of a high watershed to bay surface area ratio. While seasonal hypoxia and the formation of "dead zones" in Green Bay have received increasing attention, there are no systematic studies on the dynamics of dissolved organic matter (DOM) and its linkage to the development of hypoxia. During summer 2014, bulk dissolved organic carbon (DOC) analysis, UV-vis spectroscopy, and fluorescence excitation-emission matrices (EEMs) coupled with PARAFAC analysis were used to quantify the abundance, composition and source of DOM and their spatiotemporal variations in Green Bay, Lake Michigan. Concentrations of DOC ranged from 202 to 571μM-C (average=361±73μM-C) in June and from 279 to 610μM-C (average=349±64μM-C) in August. In both months, absorption coefficient at 254nm (a254) was strongly correlated to bulk DOC and was most abundant in the Fox River, attesting a dominant terrestrial input. Non-chromophoric DOC comprised, on average, ~32% of bulk DOC in June with higher terrestrial DOM and ~47% in August with higher aquagenic DOM, indicating that autochthonous and more degraded DOM is of lower optical activity. PARAFAC modeling on EEM data resulted in four major fluorescent DOM components, including two terrestrial humic-like, one aquagenic humic-like, and one protein-like component. Variations in the abundance of DOM components further supported changes in DOM sources. Mixing behavior of DOM components also indicated that while bulk DOM behaved quasi-conservatively, significant compositional changes occurred during transport from the Fox River to the open bay. PMID:27243792

  5. Transient absorption spectroscopy in biology using the Super-ACO storage ring FEL and the synchrotron radiation combination

    CERN Document Server

    Renault, E; De Ninno, G; Garzella, D; Hirsch, M; Nahon, L; Nutarelli, D

    2001-01-01

    The Super-ACO storage ring FEL, covering the UV range down to 300 nm with a high average power (300 mW at 350 nm) together with a high stability and long lifetime, is a unique tool for the performance of users applications. We present here the first pump-probe two color experiments on biological species using a storage ring FEL coupled to the synchrotron radiation. The intense UV pulse of the Super-ACO FEL is used to prepare a high initial concentration of chromophores in their first singlet electronic excited state. The nearby bending magnet synchrotron radiation provides, on the other hand a pulsed, white light continuum (UV-IR), naturally synchronized with the FEL pulses and used to probe the photochemical subsequent events and the associated transient species. We have demonstrated the feasibility with a dye molecule (POPOP) observing a two-color effect, signature of excited state absorption and a temporal signature with Acridine. Applications on various chromophores of biological interest are carried out,...

  6. Age dependent sensitivity of two-photon isomerization of rhodopsin chromophores in the human retina (Conference Presentation)

    Science.gov (United States)

    Wojtkowski, Maciej; Komar, Katarzyna; Palczewska, Grazyna; Zielinska, Agnieszka; Stremplewski, Patrycjusz; Palczewski, Krzysztof

    2016-03-01

    Light sensation relies on photoisomerization of chromophores in rod and cone photoreceptor cells. Spectral sensitivity of these photoreceptor cells in the retina is determined by the absorption spectra of their pigments which covers a range from 400 nm to above 700 nm. Regardless the mechanism leading to visual pigment isomerization, light sensation is triggered every time visual pigment molecules change their conformation. Thus, two-photon absorption (TPA) should produce the same result (visual sensation) as single photon absorption of light. This observation was positively verified and published by our group. During human psychophysics experiments, we found that humans can perceive light in the infrared (IR) range as colors that match half of the wavelength of the applied laser beam. Other experiments and theoretical research, such as mouse electrophysiology, biochemical studies of TPA in rhodopsin or molecular modeling studies, confirmed that visual sensation can be triggered by TPA. There are few publications describing human near infrared (NIR) perception and no formal proposals to use this phenomenon to improve ophthalmic diagnosis and monitor treatment. Here we report that the use of novel instrumentation revealed that the sensitivity threshold for NIR vision depends on age.

  7. Generation dependent singlet–singlet annihilation within multichromophoric dendrimers studied by polychromatic transient absorption

    NARCIS (Netherlands)

    Jordens, Sven; Belder, Gino De; Lor, Marc; Schweitzer, Gerd; Auweraer, Mark Van der; Weil, Tanja; Herrmann, Andreas; Wiesler, Uwe-M.; Müllen, Klaus; Schryver, Frans C. De

    2003-01-01

    Intramolecular kinetic processes in a series of shape-persistent meta- and para-substituted polyphenylene dendrimers bearing different peryleneimide chromophores at the rim have been investigated using time-resolved polychromatic transient absorption measurements. The influence of the generation num

  8. Quantum theory and experimental studies of absorption spectra and photoisomerization of azobenzene polymers

    DEFF Research Database (Denmark)

    Pedersen, Thomas Garm; Ramanujam, P.S.; Johansen, P.M.;

    1998-01-01

    The microscopic properties of azobenzene chromophores are important for a correct description of optical storage systems based on photoinduced anisotropy in azobenzene polymers. A quantum model of these properties is presented and verified by comparison to experimental absorption spectra for tran...

  9. Role of the conjugated spacer in the optimization of second-order nonlinear chromophores

    Science.gov (United States)

    Pérez-Moreno, Javier; Clays, Koen; Kuzyk, Mark G.

    2009-08-01

    We investigate the role of the conjugated spacer in the optimization of the first hyperpolarizability of organic chromophores. We propose a novel strategy for the optimization of the first hyperpolarizability that is based on the variation of the degree of conjugation for the bridge that separates the donor and acceptors at the end of push-pull type chromophores. The correlation between the type of conjugated spacer and the experimental nonlinear performance of the chromophores is investigated and interpreted in the context of the quantum limits.

  10. Measurement of CO2 Concentration with Tunable Diode Laser Absorption Spectroscopy near 2 μm%2μm附近二极管激光吸收光谱CO2浓度测量研究

    Institute of Scientific and Technical Information of China (English)

    范凤英; 宋增云

    2012-01-01

    The technology of the directly laser absorption spectroscopy for CO2 concentration measurement is described. A tunable diode laser near 2 μm is used as optical source. The multi-pass absorption technology combined with optical fiber transmission technique is improved for this method. Seventeen absorption lines of CO2 are observed and the corresponding spectral parameters (I. E. Positions, the transition of absorption band) are presented. The absorption line of CO2 molecule near 2008 nm is recorded in different pressures, from which calibration factor of experimental system at low pressures is retrieved. A CO2 molecule concentration of (2. 754±0.145) X 1016 cm"3 in the sample gas is also achieved. The resulting accuracy in the retrieved values of gas concentration could be strongly limited by an accuracy of a vacuum gauge using in our measurements. It is proved that this spectral measurement method is an attractive tool for gas concentration monitoring application and isotope abundance analysis.%采用波长2μm附近的可调谐半导体激光二极管作为光源,结合多步吸收光程和光纤传输技术,通过激光吸收光谱直接测量方法对CO2分子浓度进行测量研究.实验在标定了激光器调谐范围内17条CO2吸收谱线的波长及相应的吸收带跃迁的基础上,研究了不同压力下纯CO2气体在2008nm附近的吸收光谱,由吸收信号随气体压力的变化关系得到低气压下实验装置的系统刻度因子.并进一步对样品气体的CO2浓度进行测量,测量给出CO2分子浓度为(2.754±0.145)×1016cm-3,测量误差主要来源于目前实验中所使用的气压计的精度和读数局限性.该研究为气体分子浓度测量、同位素含量分析提供了一种光谱测量方法.

  11. Isotope Concentrations from 24-h Urine and 3-h Serum Samples Can Be Used to Measure Intestinal Magnesium Absorption in Postmenopausal Women123

    OpenAIRE

    Hansen, Karen E.; Nabak, Andrea C.; Johnson, Rachael Erin; Marvdashti, Sheeva; Keuler, Nicholas S; Shafer, Martin M.; Abrams, Steven A.

    2014-01-01

    Studies suggest a link between magnesium status and osteoporosis. One barrier to more conclusive research on the potential relation is measuring intestinal magnesium absorption (MgA), which requires the use of stable isotopes and a ≥6-d stool or 3-d urine collection. We evaluated alternative methods of measuring MgA. We administered 2 stable magnesium isotopes to 15 postmenopausal women (cohort 1) aged 62 ± 8 y with a dietary magnesium intake of 345 ± 72 mg/d. Participants fasted from 1200 h ...

  12. Chromophoric Dissolved Organic Material, Aqua MODIS, NPP, 0.125 degrees, East US

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — MODIS data is used to develop an index of the amount of chromophoric dissolved organic material (CDOM) in the surface waters. CDOM absorbs heavily in the blue...

  13. Photobleaching Kinetics of Chromophoric Dissolved Organic Matter Derived from Mangrove Leaf Litter and Floating Sargassum Colonies

    Science.gov (United States)

    We examined the photoreactivity of chromophoric dissolved organic matter (CDOM) derived from Rhizophora mangle (red mangrove) leaf litter and floating Sargassum colonies as these marine plants can be important contributors to coastal and open ocean CDOM pools, respectively. Mangr...

  14. CHROMOPHORIC DISSOLVED ORGANIC MATTER (CDOM) DERIVED FROM DECOMPOSITION OF VARIOUS VASCULAR PLANT AND ALGAL SOURCES

    Science.gov (United States)

    Chromophoric dissolved organic (CDOM) in aquatic environments is derived from the microbial decomposition of terrestrial and microbial organic matter. Here we present results of studies of the spectral properties and photoreactivity of the CDOM derived from several organic matter...

  15. Quantum dynamics of electronic excitations in biomolecular chromophores: role of the protein environment and solvent

    CERN Document Server

    Gilmore, J; Gilmore, Joel; Kenzie, Ross H. Mc

    2006-01-01

    We consider continuum dielectric models as minimal models to understand the effect of the surrounding protein and solvent on the quantum dynamics of electronic excitations in a biological chromophore. For these models we describe expressions for the frequency dependent spectral density which describes the coupling of the electronic levels in the chromophore to its environment. We find the contributions to the spectral density from each component of the chromophore environment: the bulk solvent, protein, and water bound to the protein. The relative importance of each component is determined by the time scale on which one is considering the quantum dynamics of the chromophore. Our results provide a natural explanation and model for the different time scales observed in the spectral density extracted from the solvation dynamics probed by ultra-fast laser spectroscopy techniques such as the dynamic Stokes shift and three pulse photon echo spectroscopy. Our results can be used to define under what conditions the d...

  16. Temporal fluctuations in excimer-like interactions between pi-conjugated chromophores

    CERN Document Server

    Stangl, Thomas; Schmitz, Daniela; Remmerssen, Klaas; Henzel, Sebastian; Hoeger, Sigurd; Vogelsang, Jan; Lupton, John M

    2015-01-01

    Inter- or intramolecular coupling processes between chromophores such as excimer formation or H- and J-aggregation are crucial to describing the photophysics of closely packed films of conjugated polymers. Such coupling is highly distance dependent, and should be sensitive to both fluctuations in the spacing between chromophores as well as the actual position on the chromophore where the exciton localizes. Single-molecule spectroscopy reveals these intrinsic fluctuations in well-defined bi-chromophoric model systems of cofacial oligomers. Signatures of interchromophoric interactions in the excited state - spectral red-shifting and broadening, and a slowing of photoluminescence decay - correlate with each other but scatter strongly between single molecules, implying an extraordinary distribution in coupling strengths. Furthermore, these excimer-like spectral fingerprints vary with time, revealing intrinsic dynamics in the coupling strength within one single dimer molecule, which constitutes the starting point ...

  17. Chromophoric Dissolved Organic Material, Aqua MODIS, NPP, 0.05 degrees, Global, Science Quality

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — MODIS data is used to develop an index of the amount of chromophoric dissolved organic material (CDOM) in the surface waters. CDOM absorbs heavily in the blue...

  18. Chromophoric Dissolved Organic Material, Aqua MODIS, NPP, 0.125 degrees, West US

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — MODIS data is used to develop an index of the amount of chromophoric dissolved organic material (CDOM) in the surface waters. CDOM absorbs heavily in the blue...

  19. Absorption Spectroscopy in the 4.4-4.6 μ m Infrared Wavelength Range for the 10 Khz High-Speed Measurement of CO and CO2 Concentrations in Combusting Environments.

    Science.gov (United States)

    Fotia, Matthew L.; Sell, Brian C.; Hoke, John; Schauer, Fred

    2014-06-01

    An instrument has been developed to make 10 kHz in situ combustion gas measurements of carbon monoxide (CO) and carbon dioxide (CO_2) concentrations. Operating in both the 4.40 and 4.58 μ m wavelength ranges allows for the fundamental molecular absorption bands of both molecules to be utilized. Such concentration measurements allow for the determination of total combustion efficiency of a particular process, which has engineering implications when considering the energy available from a combustion process to be utilized for propulsion purposes. A brief discussion of the initial calibration of the sensor with a calibrated diffusion flame, Hencken burner, and pressure-concentration cell is made with the main focus of the current work being the application of the instrument to examine the structure of propagating detonation waves.

  20. Novel hybrid organic-inorganic sol-gel materials based on highly efficient heterocyclic push-pull chromophores

    Science.gov (United States)

    Abbotto, Alessandro; Bozio, Renato; Brusatin, Giovanna; Facchetti, Antonio; Guglielmi, Massimo; Innocenzi, Plinio; Meneghetti, Moreno; Pagani, Giorgio A.; Signorini, Raffaella

    1999-10-01

    We report the synthesis of sol-gel materials based on highly efficient heterocycle-based push-pull chromophores showing second- and third-order nonlinear optical activity. We show the proper functionalization of the best performing chromophores and their incorporation into a hybrid organic- inorganic sol-gel matrix. Different types of functionalization of the active molecule have been considered, including hydroxyl and alkoxysilyl end-groups. The functionalization strategy responded to different criteria such as stability and synthetic availability of the final molecular precursors, their solubility, and the used synthetic approach to the sol-gel material. The synthesis of the sol-gel materials has been tuned in order to preserve molecular properties and control important factors such as final concentration of the active dye in the matrix. Both acid- and base-catalyzed sol-gel synthesis has been taken into account. 3-Glycidoxypropyltrimethoxysilane and 3- aminopropyltriethoxysilane have been used as the organically modified alkoxides to prepare the hybrid organic-inorganic matrix. Characterization of the spectroscopic properties of the sol-gel materials is presented.

  1. X-ray Radiation Induces Deprotonation of the Bilin Chromophore in Crystalline D. Radiodurans Phytochrome

    Energy Technology Data Exchange (ETDEWEB)

    Li, Feifei [Brookhaven National Lab. (BNL), Upton, NY (United States); New Mexico State Univ., Las Cruces, NM (United States); Burgie, E. Sethe [Univ. of Wisconsin, Madison, WI (United States); Yu, Tao [Northwestern Univ., Evanston, IL (United States); Heroux, Annie [Brookhaven National Lab. (BNL), Upton, NY (United States); Schatz, George C. [Northwestern Univ., Evanston, IL (United States); Vierstra, Richard D. [Univ. of Wisconsin, Madison, WI (United States); Orville, Allen M. [Brookhaven National Lab. (BNL), Upton, NY (United States)

    2015-02-04

    We report that in the red light-absorbing (Pr) state, the bilin chromophore of the Deinococcus radiodurans proteobacterial phytochrome (DrBphP) is hypersensitive to X-ray photons used in typical synchrotron X-ray protein crystallography experiments. This causes the otherwise fully protonated chromophore to deprotonate without additional major structural changes. Furthermore, these results have major implications for our understanding of the structural and chemical characteristics of the resting and intermediate states of phytochromes and other photoreceptor proteins.

  2. trans/cis-Isomerization of fluorene-bridged azo chromophore with significant two-photon absorbability at near-infrared wavelength.

    Science.gov (United States)

    Chu, Chih-Chien; Chang, Ya-Chi; Tsai, Bo-Kai; Lin, Tzu-Chau; Lin, Ja-Hon; Hsiao, Vincent K S

    2014-12-01

    Azo-containing materials have been proven to possess second-order nonlinear optical (NLO) properties, but their third-order NLO properties, which involves two-photon absorption (2PA), has rarely been reported. In this study, we demonstrate a significant 2PA behavior of the novel azo chromophore incorporated with bilateral diphenylaminofluorenes (DPAFs) as a π framework. The electron-donating DPAF moieties cause a redshifted π-π* absorption band centered at 470 nm, thus allowing efficient blue-light-induced trans-to-cis photoisomerization with a rate constant of 2.04 × 10(-1) min(-1) at the photostationary state (PSS). The open-aperture Z-scan technique that adopted a femtosecond (fs) pulse laser as excitation source shows an appreciably higher 2PA cross-section for the fluorene-derived azo chromophore than that for common azobenzene dyes at near-infrared wavelength (λex =800 nm). Furthermore, the fs 2PA response is quite uniform regardless of the molecular geometry. On the basis of the computational modeling, the intramolecular charge-transfer (ICT) process from peripheral diphenylamines to the central azo group through a fluorene π bridge is crucial to this remarkable 2PA behavior. PMID:25294108

  3. Nuclear Wavepacket Propogation Model for the Retinal Chromophore in Rhodopsin

    Science.gov (United States)

    Corn, Brittany; Malinovskaya, Svetlana

    2009-05-01

    Rhodopsin, consisting of a retinal chromophore and a protein opsin, is responsible for the first steps in the vision process through a cis to trans photoisomerization, which is completed within 200 fs[1]. Efforts to control the ultrafast dynamics of this molecule have been carried out experimentally[2] as well as through quantum mechanical modeling of nuclear wave packet propagation[3]. We propose a two state model in which the ground electronic Potential Energy Surface (PES) is made up of two adjacent harmonic potentials, representing the cis and trans retinal saddle points, as well as an excited PES, characterized by the Morse potential, which meets the ground PES at a conical intersection. We explore the achievement of a high quantum yield of the trans retinal configuration by varying parameters of the external field and choosing the most adequate shape. Another investigation is presented in which we compare the charge distribution of cis and trans retinal in order to reveal a charge transfer mechanism behind the isomerization of rhodopsin. The results of the Lowdin and Natural Population Analyses demonstrate a significant transfer of charge in and around the isomerization region. [1] RW Schoenlein, LA Peteanu, RA Mathies, CV Shank, Science 254, 412 (1991) [2] VI Prokhorenko, AM Nagy, SA Waschuk, LS Brown, RR Birge, RJD Miller, Science 313, 1257 (2006) [3] S Hahn, G Stock, Chem Phys 259, 297-312 (2000)

  4. Synergistic "ping-pong" energy transfer for efficient light activation in a chromophore-catalyst dyad.

    Science.gov (United States)

    Quaranta, Annamaria; Charalambidis, Georgios; Herrero, Christian; Margiola, Sofia; Leibl, Winfried; Coutsolelos, Athanassios; Aukauloo, Ally

    2015-10-01

    The synthesis of a porphyrin-Ru(II) polypyridine complex where the porphyrin acts as a photoactive unit and the Ru(II) polypyridine as a catalytic precursor is described. Comparatively, the free base porphyrin was found to outperform the ruthenium based chromophore in the yield of light induced electron transfer. Mechanistic insights indicate the occurrence of a ping-pong energy transfer from the (1)LC excited state of the porphyrin chromophore to the (3)MCLT state of the catalyst and back to the (3)LC excited state of the porphyrin unit. The latter, triplet-triplet energy transfer back to the chromophore, efficiently competes with fast radiationless deactivation of the excited state at the catalyst site. The energy thus recovered by the chromophore allows improved yield of formation of the oxidized form of the chromophore and concomitantly of the oxidation of the catalytic unit by intramolecular charge transfer. The presented results are among the rare examples where a porphyrin chromophore is successfully used to drive an oxidative activation process where reductive processes prevail in the literature. PMID:26327298

  5. Molecular bases for the selection of the chromophore of animal rhodopsins.

    Science.gov (United States)

    Luk, Hoi Ling; Melaccio, Federico; Rinaldi, Silvia; Gozem, Samer; Olivucci, Massimo

    2015-12-15

    The functions of microbial and animal rhodopsins are triggered by the isomerization of their all-trans and 11-cis retinal chromophores, respectively. To lay the molecular basis driving the evolutionary transition from the all-trans to the 11-cis chromophore, multiconfigurational quantum chemistry is used to compare the isomerization mechanisms of the sensory rhodopsin from the cyanobacterium Anabaena PCC 7120 (ASR) and of the bovine rhodopsin (Rh). It is found that, despite their evolutionary distance, these eubacterial and vertebrate rhodopsins start to isomerize via distinct implementations of the same bicycle-pedal mechanism originally proposed by Warshel [Warshel A (1976) Nature 260:678-683]. However, by following the electronic structure changes of ASR (featuring the all-trans chromophore) during the isomerization, we find that ASR enters a region of degeneracy between the first and second excited states not found in Rh (featuring the 11-cis chromophore). We show that such degeneracy is modulated by the preorganized structure of the chromophore and by the position of the reactive double bond. It is argued that the optimization of the electronic properties of the chromophore, which affects the photoisomerization efficiency and the thermal isomerization barrier, provided a key factor for the emergence of the striking amino acid sequence divergence observed between the microbial and animal rhodopsins. PMID:26607446

  6. 基于光谱吸收率积分的气体浓度测量方法%Gas Concentration Measurement Based on the Integral Value of Absorptance Spectrum

    Institute of Scientific and Technical Information of China (English)

    刘慧军; 陶少华; 杨兵初; 邓宏贵

    2015-01-01

    The absorptance spectrum of a gas is the basis for the qualitative and quantitative analysis of the gas by the law of the Lambert-Beer .The integral value of the absorptance spectrum is an important parameter to describe the characteristics of the gas absorption .Based on the measured absorptance spectrum of a gas ,we collected the required data from the database of HIT-RAN ,and chose one of the spectral lines and calculated the integral value of the absorptance spectrum in the frequency domain , and then substituted the integral value into Lambert-Beer’s law to obtain the concentration of the detected gas .By calculating the integral value of the absorptance spectrum we can avoid the more complicated calculation of the spectral line function and a series of standard gases for calibration ,so the gas concentration measurement will be simpler and faster .We studied the changing trends of the integral values of the absorptance spectrums versus temperature .Since temperature variation would cause the corre-sponding variation in pressure ,we studied the changing trends of the integral values of the absorptance spectrums versus both the pressure not changed with temperature and changed with the temperature variation .Based on the two cases ,we found that the integral values of the absorptance spectrums both would firstly increase ,then decrease ,and finally stabilize with temperature increasing ,but the ranges of specific changing trend were different in the two cases .In the experiments ,we found that the rela-tive errors of the integrated values of the absorptance spectrum were much higher than 1% and still increased with temperature when we only considered the change of temperature and completely ignored the pressure affected by the temperature variation , and the relative errors of the integrated values of the absorptance spectrum were almost constant at about only 1% when we con-sidered that the pressure were affected by the temperature variation .As the

  7. Chromophoric Dissolved Organic Matter across a Marine Distributed Biological Observatory in the Pacific Arctic Region

    Science.gov (United States)

    Berman, S. L.; Frey, K. E.; Shake, K. L.; Cooper, L. W.; Grebmeier, J. M.

    2014-12-01

    Dissolved organic matter (DOM) plays an important role in marine ecosystems as both a carbon source for the microbial food web (and thus a source of CO2 to the atmosphere) and as a light inhibitor in marine environments. The presence of chromophoric dissolved organic matter (CDOM; the optically active portion of total DOM) can have significant controlling effects on transmittance of sunlight through the water column and therefore on primary production as well as the heat balance of the upper ocean. However, CDOM is also susceptible to photochemical degradation, which decreases the flux of solar radiation that is absorbed. Knowledge of the current spatial and temporal distribution of CDOM in marine environments is thus critical for understanding how ongoing and future changes in climate may impact these biological, biogeochemical, and physical processes. We describe the quantity and quality of CDOM along five key productive transects across a developing Distributed Biological Observatory (DBO) in the Pacific Arctic region. The samples were collected onboard the CCGS Sir Wilfred Laurier in July 2013 and 2014. Monitoring of the variability of CDOM along transects of high productivity can provide important insights into biological and biogeochemical cycling across the region. Our analyses include overall concentrations of CDOM, as well as proxy information such as molecular weight, lability, and source (i.e., autochthonous vs. allochthonous) of organic matter. We utilize these field observations to compare with satellite-derived CDOM concentrations determined from the Aqua MODIS satellite platform, which ultimately provides a spatially and temporally continuous synoptic view of CDOM concentrations throughout the region. Examining the current relationships among CDOM, sea ice variability, biological productivity, and biogeochemical cycling in the Pacific Arctic region will likely provide key insights for how ecosystems throughout the region will respond in future

  8. The Measurement and Changes of Chromophoric Dissolved Organic Matter in Water%水体中有色可溶性有机物的测量及其变化

    Institute of Scientific and Technical Information of China (English)

    付宇; 韦玉春; 周宇

    2012-01-01

    Chromophoric dissolved organic matter (CDOM) is one of the major constituents in water color remote sensing. It is significantly important in the research Held such as aquatic ecosystem, optical remote sensing, organic pollution and global carbon circulation, and becoming a hot research topic. This paper systematically summed up the measurement and calculation methods of CDOM, measurement problems, spatial and temporal changes of CDOM and its correlative factors, so as to provide a reference for related work. Presently, routine measurement and calculation methods of CDOM include spectral absorption coefficient and fluorescence spectrum method, CDOM concentration is expressed by absorption coefficient at 355 nm,375 nm or 440 nm in the former, and expressed by fluorescence intensity at excitation wavelength between 200 nm and 435 nm, and emission wavelength between 2S0 nm and 600 nm in the latter. CDOM absorption coefficient in water varying with time, region, depth or water body type, and its value is correlated with factors such as salinity, chlorophylla concentration, DOM (dissolved organic matter) , suspended sediment concentration and others.%有色可溶性有机物(CDOM)是水色遥感的重要组分之一,在水生生态系统、光学遥感、有机污染、全球碳循环等方面具有重要的研究意义,这已成为国内外学者研究的热点.本文系统总结了国内外CDOM测量计算的方法、测量中存在的问题、CDOM的时空变化特点及其相关因素,以期为相关的工作提供参考.目前CDOM的常规测量计算方法包括光谱吸收系数和荧光光谱法两种,前者使用355 nm、375 nm、440 nm等波长处的吸收系数来表示CDOM的浓度,后者采用200 nm~435 nm激发波长和250 nm~ 600 nm发射波长的荧光强度来表示CDOM的浓度.CDOM吸收系数在不同时间段、不同区域、不同深度或不同类型水体中均存在差异,且其值大小与盐度、叶绿素a浓度、DOC、悬浮泥沙浓

  9. Chemometric evaluation of Cd, Co, Cr, Cu, Ni (inductively coupled plasma optical emission spectrometry) and Pb (graphite furnace atomic absorption spectrometry) concentrations in lipstick samples intended to be used by adults and children.

    Science.gov (United States)

    Batista, Érica Ferreira; Augusto, Amanda dos Santos; Pereira-Filho, Edenir Rodrigues

    2016-04-01

    A method was developed for determining the concentrations of Cd, Co, Cr, Cu, Ni and Pb in lipstick samples intended to be used by adults and children using inductively coupled plasma optical emission spectrometry (ICP OES) and graphite furnace atomic absorption spectrometry (GF AAS) after treatment with dilute HNO3 and hot block. The combination of fractional factorial design and Desirability function was used to evaluate the ICP OES operational parameters and the regression models using Central Composite and Doehlert designs were calculated to stablish the best working condition for all analytes. Seventeen lipstick samples manufactured in different countries with different colors and brands were analyzed. Some samples contained high concentrations of toxic elements, such as Cr and Pb, which are carcinogenic and cause allergic and eczematous dermatitis. The maximum concentration detected was higher than the permissible safe limits for human use, and the samples containing these high metal concentrations were intended for use by children. Principal component analysis (PCA) was used as a chemometrics tool for exploratory analysis to observe the similarities between samples relative to the metal concentrations (a correlation between Cd and Pb was observed). PMID:26838401

  10. Application of Box-Behnken design in the optimisation of an on-line pre-concentration system using knotted reactor for cadmium determination by flame atomic absorption spectrometry

    Energy Technology Data Exchange (ETDEWEB)

    Souza, Anderson S. [Universidade Federal da Bahia, Instituto de Quimica, Nucleo de Excelencia em Quimica Analitica da Bahia, Campus Universitario de Ondina, Salvador, Bahia 40170-290 (Brazil); Universidade Estadual do Sudoeste da Bahia, Departamento de Quimica e Exatas, Campus de Jequie, Jequie, Bahia 45206-190 (Brazil); Santos, Walter N.L. dos [Universidade Federal da Bahia, Instituto de Quimica, Nucleo de Excelencia em Quimica Analitica da Bahia, Campus Universitario de Ondina, Salvador, Bahia 40170-290 (Brazil); Ferreira, Sergio L.C. [Universidade Federal da Bahia, Instituto de Quimica, Nucleo de Excelencia em Quimica Analitica da Bahia, Campus Universitario de Ondina, Salvador, Bahia 40170-290 (Brazil)]. E-mail: slcf@ufba.br

    2005-06-30

    The present paper proposes an on-line pre-concentration system for cadmium determination in drinking water using flame atomic absorption spectrometry (FAAS). Cadmium(II) ions are retained as 1-(2-pyridylazo)-2-naphthol (PAN) complex at the walls of a knotted reactor, followed of elution using hydrochloric acid solution. The optimization was performed in two steps using factorial design for preliminary evaluation and a Box-Behnken design for determination of the critical experimental conditions. The variables involved were: sampling flow-rate, reagent concentration, pH and buffer concentration, and as response the analytical signal (absorbance). The validation process was performed considering the parameters: linearity and other characteristics of the calibration curve, analytical features of on-line pre-concentration system, precision, effect of other ions in the pre-concentration system and accuracy. Using the optimized experimental conditions, the procedure allows cadmium determination with a detection limit (3 {sigma} / S) of 0.10 {mu}g L{sup -1}, a quantification limit (10 {sigma} / S) of 0.33 {mu}g L{sup -1}, and a precision, calculated as relative standard deviation (RSD) of 2.7% (n = 7) and 2.4% (n = 7) for cadmium concentrations of 5 and 25 {mu}g L{sup -1}, respectively. A pre-concentration factor of 18 and a sampling frequency of 48 h{sup -1} were obtained. The recovery for cadmium in the presence of several ions demonstrated that this procedure could be applied for the analysis of water samples. The method was applied for cadmium determination in drinking water samples collected in Salvador City, Brazil. The cadmium concentrations found in five samples were lower than the maximum permissible levels established by the World Health Organization.

  11. 低浓度 CO2捕集的吸收率测算%Absorption rate measurement and calculation of low-concentration CO2 capture technical

    Institute of Scientific and Technical Information of China (English)

    马超援

    2016-01-01

    The paper introduces low-concentration CO2 absorbinf methods,describes the measurement and calculation methods of low-concentra-tion CO2 capture technical and explores the elements of determininf absorbinf afent,which has certain meaninf for control indoor CO2 concentration.%介绍了常用的低浓度 CO2气体吸收方法,就低浓度 CO2捕集吸收率的测算方法进行了阐述,并探讨了确定吸收剂的要素,对室内 CO2浓度的控制有一定的意义。

  12. The contribution of mycosporine-like amino acids, chromophoric dissolved organic matter and particles to the UV protection of sea-ice organisms in the Baltic Sea.

    Science.gov (United States)

    Piiparinen, Jonna; Enberg, Sara; Rintala, Janne-Markus; Sommaruga, Ruben; Majaneva, Markus; Autio, Riitta; Vähätalo, Anssi V

    2015-05-01

    The effects of ultraviolet radiation (UVR) on the synthesis of mycosporine-like amino acids (MAAs) in sea-ice communities and on the other UV-absorption properties of sea ice were studied in a three-week long in situ experiment in the Gulf of Finland, Baltic Sea in March 2011. The untreated snow-covered ice and two snow-free ice treatments, one exposed to wavelengths > 400 nm (PAR) and the other to full solar spectrum (PAR + UVR), were analysed for MAAs and absorption coefficients of dissolved (aCDOM) and particulate (ap) fractions, the latter being further divided into non-algal (anap) and algal (aph) components. Our results showed that the diatom and dinoflagellate dominated sea-ice algal community responded to UVR down to 25-30 cm depth by increasing their MAA : chlorophyll-a ratio and by extending the composition of MAA pool from shinorine and palythine to porphyra-334 and an unknown compound with absorption peaks at ca. 335 and 360 nm. MAAs were the dominant absorbing components in algae in the top 10 cm of ice, and their contribution to total absorption became even more pronounced under UVR exposure. In addition to MAAs, the high absorption by chromophoric dissolved organic matter (CDOM) and by deposited atmospheric particles provided UV-protection for sea-ice organisms in the exposed ice. Efficient UV-protection will especially be of importance under the predicted future climate conditions with more frequent snow-free conditions. PMID:25837523

  13. Cis-trans photoisomerization of the chromophore in the green fluorescent protein variant E2GFP: A molecular dynamics study

    International Nuclear Information System (INIS)

    By force-field molecular dynamics simulations we investigate the dynamics of cis-trans photoisomerization of the chromophore in the GFP mutant E2GFP (F64L/S65T/T203Y), and the rearrangements that allow the protein structure to accommodate the trans form of the chromophore. We find that in this new configuration the chromophore is less well coordinated with the surrounding protein matrix. From this configuration the simulated trans-cis photoisomerization of the chromophore and the associated non-radiative decay are faster than in the cis-trans case

  14. Ultrafast dual photoresponse of isolated biological chromophores: link to the photoinduced mode-specific non-adiabatic dynamics in proteins

    DEFF Research Database (Denmark)

    Bochenkova, Anastasia; Andersen, Lars Henrik

    2013-01-01

    The anionic wild-type Green Fluorescent Protein (GFP) chromophore defines the entire class of naturally occurring chromophores, which are based on the oxydized tyrosine side chain. The GFP chromophore exhibits an enriched photoinduced non-adiabatic dynamics in the multiple excited-state decay...... channels. Deactivation includes vibrational resonant photodetachment and internal conversion. Here, we provide a detailed insight in the efficiency of different vibrational modes in promoting a selective photoresponse in the bare GFP chromophore anion. We introduce a general theoretical model......-adiabatic dynamics in the proteins....

  15. Bi(III)4-methylpiperidinedithiocarbamate coprecipitation procedure for separation-pre-concentration of trace metal ions in water samples by flame atomic absorption spectrometric determination

    International Nuclear Information System (INIS)

    A pre-concentration method was developed for determination of trace amounts of cadmium, copper and lead in water samples by FAAS after coprecipitation by using potassium 4-methylpiperidinedithiocarbamate (K4-MPDC) as a chelating agent and Bi(III) as a carrier element. This procedure is based on filtration of the solution containing precipitate on a cellulose nitrate membrane filter following Cd(II), Cu(II) and Pb(II) coprecipitation with Bi(III)4-MPDC and then the precipitates together with membrane filter were dissolved in concentrated nitric acid. The metal contents of the final solution were determined by FAAS. Several parameters including pH of sample solution, amount of carrier element and reagent, standing time, sample volume for precipitation and the effects of diverse ions were examined. The accuracy of the method was tested with standard reference material (MBH, C31XB20 and CRM BCR-32) and Cd, Cu and Pb added samples. Determination of Cd, Cu and Pb was carried out in sea water, river water and tap water samples. The recoveries were >95%. The relative standard deviations of determination were less than 10%

  16. OH− absorption and nonvolatile holographic storage properties in Mg:Ru:Fe:LiNbO3 crystal as a function of Mg concentration

    International Nuclear Information System (INIS)

    Mg:Ru:Fe:LiNbO3 crystals with various concentrations of MgO (in mole) and fixed content of RuO2 and Fe2O3 (in mass) are grown with the Czochralski method from the congruent melt. Their infrared transmission spectra are measured and discussed to investigate the defect structure. With the increase of Mg2+ concentration the blue nonvolatile holographic storage capability is enhanced. The nonvolatile holographic storage properties of dual-wavelength recording of Mg(7 mol%):Ru:Fe:LiNbO3 nonvolatile diffraction efficiency, response time, and nonvolatile sensitivity reach 59.8%, 70 s, and 1.04 cm/J, respectively. Comparing Mg(7 mol%):Ru:Fe:LiNbO3 with Ru:Fe:LiNbO3 crystal, the response time is shortened apparently. The nonvolatile diffraction efficiency and sensitivity are raised largely. The mechanism in blue photorefractive nonvolatile holographic storage is discussed. (electromagnetism, optics, acoustics, heat transfer, classical mechanics, and fluid dynamics)

  17. Simulation of femtosecond “double-slit” experiments for a chromophore in a dissipative environment

    Energy Technology Data Exchange (ETDEWEB)

    Gelin, M. F.; Domcke, W. [Department of Chemistry, Technische Universität München, Garching D-85747 (Germany); Tanimura, Y. [Department of Chemistry, Technische Universität München, Garching D-85747 (Germany); Department of Chemistry, Graduate School of Science, Kyoto University, Kyoto 606-8502 (Japan)

    2013-12-07

    We performed simulations of the prototypical femtosecond “double-slit” experiment with strong pulsed laser fields for a chromophore in solution. The chromophore is modeled as a system with two electronic levels and a single Franck-Condon active underdamped vibrational mode. All other (intra- and inter-molecular) vibrational modes are accounted for as a thermal bath. The system-bath coupling is treated in a computationally accurate manner using the hierarchy equations of motion approach. The double-slit signal is evaluated numerically exactly without invoking perturbation theory in the matter-field interaction. We show that the strong-pulse double-slit signal consists of a superposition of N-wave-mixing (N = 2, 4, 6…) responses and can be split into population and coherence contributions. The former reveals the dynamics of vibrational wave packets in the ground state and the excited electronic state of the chromophore, while the latter contains information on the dephasing of electronic coherences of the chromophore density matrix. We studied the influence of heat baths with different coupling strengths and memories on the double-slit signal. Our results show that the double-slit experiment performed with strong (nonperturbative) pulses yields substantially more information on the photoinduced dynamics of the chromophore than the weak-pulse experiment, in particular, if the bath-induced dephasings are fast.

  18. The native forms of the phycobilin chromophores of algal biliproteins. A clarification.

    Science.gov (United States)

    O'Carra, P; Murphy, R F; Killilea, S D

    1980-05-01

    Pigments released from phycoerythrins and phycocyanins by treatment with hot methanol are currently regarded as equivalent to the native chromophores phycoerythrobilin and phycocyanobilin. However, evidence presented here confirms the original view of O'Carra & O'hEocha [(1966 Phytochemistry 5, 993-997] that these methanol-released pigments are artefacts differing in their chromophoric conjugated systems from the native protein-bound prosthetic groups. By contrast, the native spectral properties are retained in pigments released by careful acid treatment of the biliproteins and these acid-released phycobilins, rather than the methanol-released pigments, are therefore regarded as the protein-free forms of the native chromophores. The conclusion reached by Chapman, Cole & Siegelman [(1968) J. Am. Chem. Soc. 89, 3643-3645], that all the algal biliproteins contain only phycoerythrobilin and phycocyanobilin, is shown to be incorrect. The identification of a urobilinoid chromophore, phycourobilin, accompanying phycoerythrobilin in B- and R- phycoerythrins is confirmed and supported by more extensive evidence. The cryptomonad phycocyanins are shown to contain a phycobilin chromophore accompanying phycocyanobilin. This further phycobilin has the spectral properties of the class of bilins known as violins and the provisional name "cryptoviolin" is proposed pending elucidation of its structure. PMID:7396851

  19. Ultraviolet light absorption of an ophthalmic formulation with Aloe extracts.

    Science.gov (United States)

    Ji, Yimei; Jia, Jicheng

    2009-09-01

    Aloin and polysaccharide present in extracts of Aloe arborescens Miller were formulated into a binary solution to protect eyes from bacterial infection and ultraviolet radiation (UVR). The UVR absorption spectrum was recorded from 190 to 440 nm using a UV spectrometer. The physical properties of the product were examined in terms of its appearance, odor, pH, viscosity, density, refractive index, and stability. The binary solution exhibited three absorption peaks in the UVA, B and C regions, respectively. Such UV absorption capability was attributed to the phenolic chromophores pertaining to aloin. The present study suggested that the formulated binary solution has potential application as an UV absorption agent with built-in antimicrobial activity. PMID:19831035

  20. 基于耦合技术的单色光谱吸收法检测甲烷气体浓度%Based on the Optical fiber coupling technology of spectral absorption method to detect methane gas concentration

    Institute of Scientific and Technical Information of China (English)

    姜建国; 刘盈萱; 王源

    2014-01-01

    In allusion to flammable and explosive safety problems of electronic testing equipment in methane gas concentration and adjustable laser expensive prices, put forward an application of coupling technique of mono-chromatic spectrum tests to detect methane gas concentration. The choice of monochromatic light source is given based on, designed a monochromatic spectrum absorption detection device based on optical fiber coupling technolo-gy. Application of Matlab is proposed for methane gas concentration and two sets of data output voltage linear fit-ting. Through the output voltage to predict methane gas concentration, and exam the error of the predicted values and the real value. The experimental results show that optical fiber coupling technology was applied to monochromatic spectrum absorption method to detect methane gas concentration can be without power in real-time detection of methane gas concentration, error less than 2%.%针对电子检测装置在甲烷气体浓度检测时存在易燃易爆等安全隐患,本文提出了一种基于光纤耦合技术的单色光谱吸收法检测甲烷气体浓度的方案。给出了单色光源的选择依据,设计了基于光纤耦合技术的单色光谱吸收法检测装置,提出了应用Matlab对甲烷气体浓度与输出电压两组数据进行线性拟合。通过输出电压预测出甲烷气体浓度,并检测了预测值与真实值的误差。实验结果表明,将光纤耦合技术应用于单色光谱吸收法检测甲烷气体浓度,可以在无电力介入的情况下对甲烷气体浓度进行实时检测,误差不超过2%。

  1. Synthesis of Dendrimer Containing Carbazole Unit as a Core Chromophore

    International Nuclear Information System (INIS)

    Dendrimers, which are prepared by repetition of a given set of reactions using either divergent or convergent strategies, are highly branched and regular macromolecules with well-defined structures and have served as functional objects in nanotechnology and nano-materials science. Following conventional organic small molecules and polymers, dendrimers are now regarded as the third class of materials for use in organic light-emitting diodes (OLEDs) and have attracted much attention due to their distinguished properties. Dendrimers contain three distinct structural parts that are the core, end-groups, and branched units connecting core and periphery. For light-emitting dendrimers, the core is usually selected as the luminescent chromophore, and the dendrons and their periphery are charge transporting units and can also tune the solubility. In contrast to linear polymers, dendrimers are sphere-like with dimensions of the order of nanometers depending on the generation number. By careful structural design, dendrimers combine the potential advantages of both small molecules and polymers. Therefore, the innovative strategy different from conventional convergent and divergent routes has been required to simplify dendrimer synthesis. Recent solid chemistry is the click chemistry which is the copper-catalyzed 1,3-dipolar cycloaddition reaction between alkyne and azide developed by Sharpless and Tornφe. This reaction has many advantages: very high yields, mild and simple reaction conditions, oxygen and water tolerance, and easy isolation of product. This reaction is clearly a breakthrough in the synthesis of dendrimers and dendritic and polymer materials. We have developed the fusion and stitching methods for the synthesis of various dendrimers using click chemistry between an alkyne and an azide. Overall, this method was found to be a straightforward strategy for the synthesis of triazole-based dendrimers. Taking advantage of this fact, herein we report a feasible route

  2. A Diabatic Three-State Representation of Photoisomerization in the Green Fluorescent Protein Chromophore

    CERN Document Server

    Olsen, Seth

    2009-01-01

    We give a quantum chemical description of bridge photoisomerization reaction of green fluorescent protein (GFP) chromophores using a representation over three diabatic states. Bridge photoisomerization leads to non-radiative decay, and competes with fluorescence in these systems. In the protein, this pathway is suppressed, leading to fluorescence. Understanding the electronic structure of the photoisomerization is a prerequisite to understanding how the protein suppresses this pathway and preserves the emitting state of the chromophore. We present a solution to the state-averaged complete active space problem, which is spanned at convergence by three fragment-localized orbitals. We generate the diabatic-state representation by applying a block diagonalization transformation to the Hamiltonian calculated for the anionic chromophore model HBDI with multi-reference, multi-state perturbation theory. The diabatic states that emerge are charge-localized structures with a natural valence-bond interpretation. At plan...

  3. Chromophore-Based Luminescent Metal-Organic Frameworks as Lighting Phosphors.

    Science.gov (United States)

    Lustig, William P; Wang, Fangming; Teat, Simon J; Hu, Zhichao; Gong, Qihan; Li, Jing

    2016-08-01

    Energy-efficient solid-state-lighting (SSL) technologies are rapidly developing, but the lack of stable, high-performance rare-earth free phosphors may impede the growth of the SSL market. One possible alternative is organic phosphor materials, but these can suffer from lower quantum yields and thermal instability compared to rare-earth phosphors. However, if luminescent organic chromophores can be built into a rigid metal-organic framework, their quantum yields and thermal stability can be greatly improved. This Forum Article discusses the design of a group of such chromophore-based luminescent metal-organic frameworks with exceptionally high performance and rational control of the important parameters that influence their emission properties, including electronic structures of chromophore, coligands, metal ions, and guest molecules. PMID:27244591

  4. Detection of Cellulose-Derived Chromophores by Ambient Ionization-MS.

    Science.gov (United States)

    Schedl, Andreas; Korntner, Philipp; Zweckmair, Thomas; Henniges, Ute; Rosenau, Thomas; Potthast, Antje

    2016-01-19

    The detection of individual chromophores that contribute to the overall discoloration of paper ("yellowing") is a challenge because those substances are only present in very small amounts. In this research, two analytical approaches based on ambient ionization techniques, namely, desorption electrospray ionization and paper spray, both coupled to mass spectrometry, are compared to each other with regard to their suitability for detecting acetylated cellulosic key chromophores. The paper spray approach proved to be the more sensitive and versatile method. Subsequently, paper spray (PS)-mass spectrometry was applied to model papers and historical papers in which the acetylated chromophores were detected successfully. Independent accurate mass measurements confirmed the results obtained from reference compounds, model samples, and real-world specimens. PMID:26691171

  5. Three-dimensional nonlinear optical chromophores based on metal-to-ligand charge-transfer from ruthenium(II) or iron(II) centers.

    Science.gov (United States)

    Coe, Benjamin J; Harris, James A; Brunschwig, Bruce S; Asselberghs, Inge; Clays, Koen; Garín, Javier; Orduna, Jesús

    2005-09-28

    In this article, we describe a series of new complex salts in which electron-rich transition-metal centers are coordinated to three electron-accepting N-methyl/aryl-2,2':4,4' ':4',4' ''-quaterpyridinium ligands. These complexes contain either Ru(II) or Fe(II) ions and have been characterized by using various techniques, including electronic absorption spectroscopy and cyclic voltammetry. Molecular quadratic nonlinear optical (NLO) responses beta have been determined by using hyper-Rayleigh scattering at 800 nm and also via Stark (electroabsorption) spectroscopic studies on the intense, visible d --> pi* metal-to-ligand charge-transfer bands. The latter experiments reveal that these putatively octupolar D(3) chromophores exhibit two substantial components of the beta tensor which are associated with transitions to dipolar excited states. Computations involving time-dependent density-functional theory and the finite field method serve to further illuminate the electronic structures and associated linear and NLO properties of the new chromophoric salts. PMID:16173774

  6. Inflow rate-driven changes in the composition and dynamics of chromophoric dissolved organic matter in a large drinking water lake.

    Science.gov (United States)

    Zhou, Yongqiang; Zhang, Yunlin; Jeppesen, Erik; Murphy, Kathleen R; Shi, Kun; Liu, Mingliang; Liu, Xiaohan; Zhu, Guangwei

    2016-09-01

    Drinking water lakes are threatened globally and therefore in need of protection. To date, few studies have been carried out to investigate how the composition and dynamics of chromophoric dissolved organic matter (CDOM) in drinking water lakes are influenced by inflow rate. Such CDOM can lead to unpleasant taste and odor of the water and produce undesirable disinfection byproducts during drinking water treatment. We studied the drinking water Lake Qiandao, China, and found that the concentrations of suspended particulate matter (SPM) in the lake increased significantly with inflow rate (p water safety and requires higher removal efficiency of CDOM during drinking water treatment processes.

  7. Determination of Concentration of Nickel in tea by Graphite Furnace Atomic Absorption Spectrometry With Slurry Sampling%悬浮液进样石墨炉原子吸收法测定茶叶中镍含量

    Institute of Scientific and Technical Information of China (English)

    陈江; 周李; 姚恩亲

    2011-01-01

    本文介绍了一种悬浮液进样石墨炉原子吸收光谱法测定茶叶中镍含量的方法.讨论了悬浮液制备、样品粒径、取样量、悬浮液酸度及扣背景方式等因素对测定结果的影响.经优化后,方法检出限为0.32mg/kg,精密度3.64%,回收率102%.方法简单快速,效率高,劳动强度低,是测定茶叶中镍含量的高效方法.%The method of determining the concentration of Nickle in tea by graphite furnace atomic absorption spectrometry with slurry sampling is introduced. The effects of slurry preparation, particle size of sample,sampling quantity ,acid concentration cf slurry and the mode of background deduction on the determination are studied. Under the optimized operating conditions,the detection limit of this method is 0.32 mg/kg,the RSD is 3.64% and the recovery is 102%. The advantages of simple,fast and low labor intensity indicate that it is an effective method for determining the concentration of Nickel in tea.

  8. Real-Time Probing of Structural Dynamics by Interaction between Chromophores

    DEFF Research Database (Denmark)

    Brogaard, Rasmus Y.; Møller, Klaus Braagaard; Sølling, Theis Ivan

    2011-01-01

    the cation in 1.6 ps. The real-time probing of the excited-state dynamics is made possible by exploiting the interaction between the two bromine chromophores and its dependence on molecular conformation. This experiment therefore illustrates the applicability of the concept of probing ultrafast......We present an investigation of structural dynamics in excited-state cations probed in real-time by femtosecond timeresolved ion photofragmentation spectroscopy. From photoelectron spectroscopy data on 1,3-dibromopropane we conclude that the pump pulse ionizes the molecule, populating an excited...... molecular dynamics using the intramolecular interaction between two chromophores....

  9. A Dark Excited State of Fluorescent Protein Chromophores, Considered as Brooker Dyes

    CERN Document Server

    Olsen, Seth

    2010-01-01

    The green fluorescent protein (GFP) chromophore is an asymmetric monomethine dye system. In the resonance color theory of dyes, a strong optical excitation arises from interactions of two valence-bond structures with a third, higher structure. We use correlated quantum chemistry to show that the anionic chromophore is a resonant Brooker dye, and that the third structure corresponds to a higher stationary electronic state of this species. The excitation energy of this state should be just below the first excitation energy of the neutral form. This has implications for excited state mechanism in GFPs, which we discuss.

  10. Derivatization/chromophore introduction of tranexamic acid and its HPLC determination in pharmaceutical formulations

    Directory of Open Access Journals (Sweden)

    M. Ashfaq

    2015-04-01

    Full Text Available A viable cost-effective and isocratic approach employing C-18 column (250 mm × 4.6 mm, 5 μm based HPLC has been utilized to separate and estimate the drug, tranexamic acid in pharmaceutical formulations. Tranexamic acid contains no π-electrons to act as fluorophore or chromophore hence pre-column derivatization was performed with benzene sulfonyl chloride in aqueous medium at room temperature. The derivatized drug was then estimated using C-18 column by exploiting a 25:75 (v/v solvent mixture of acetonitrile and 0.1 M ammonium acetate (pH 5.0 as the mobile phase. The flow rate of mobile phase was 1 mL/min and detection was performed at a wavelength of 232 nm using UV detector. Retention time of tranexamic acid was 4.42 min. The method followed linear regression equation in the concentration range of 1–100 μg/mL with co-efficient of determination equal to 0.9994. The limit of detection and limit of quantitation were 0.3 and 1 μg/mL, respectively. The relative standard deviation and recovery ranges for tranexamic acid were found to be 0.11–2.47% and 97.60–103.25%, respectively. The suggested method is very sensitive and may have the potential to be used for tranexamic acid detection in medicinal formulations.

  11. Packing of Large Two- and Three-Photon Activity Into Smallest Possible Unsymmetrical Fluorene Chromophores.

    Science.gov (United States)

    Kundi, Varun; Thankachan, Pompozhi Protasis

    2016-05-01

    The quantum chemical study of one-, two-, and three-photon absorption (1PA, 2PA, and 3PA) properties for a set of compact fluorene derivatives (FD) with combination of different donor and acceptor moieties on both sides of fluorene ring system is presented. The main goal of the study is to pack large two-photon (2P) and three-photon (3P) activity into smallest possible chromophore. Linear, quadratic, and cubic response time-dependent density functional theory was used to calculate 1PA, 2PA, and 3PA properties, respectively. We used CAMB3LYP/cc-pVDZ level of theory for all the property calculations. The 2P and 3P transition probabilities were recalculated using two-state model approach and found to be in good agreement with the response theory results for first excited state. To include the contributions from higher states, the three-state model was also employed to recalculate the 2P transition probabilities and found to be in excellent agreement with response theory. The 2P/3P tensor elements were also analyzed to find reasons behind large 2P/3P activities. All the orbitals involved in transition processes were studied in detail by both molecular orbital pictures (qualitatively) and overlap diagnostic Λ-values (quantitatively). The study reveals that the novel fluorene derivatives FD-12 and FD-13 have shown large 2PA cross-section values of 1100 G.M. and 1030 G.M.; and 3PA transition probabilities of 6.10 × 10(10) a.u. and 4.85 × 10(10) a.u., respectively, for transition S0 → S1. The largest 3PA transition probability of 4.04 × 10(11) a.u. was found with FD-12 for S0 → S2 excitation. The linear relationship between Λ-values and 2PA cross-section values was also studied. PMID:27054876

  12. Surface Absorption Polarization Sensors (SAPS), Final Technical Report, Laser Probing of Immobilized SAPS Actuators Component

    Energy Technology Data Exchange (ETDEWEB)

    Joseph I. Cline

    2010-04-22

    A novel hypothesized detection scheme for the detection of chemical agents was proposed: SAPS ``Surface-Adsorbed Polarization Sensors''. In this technique a thin layer of molecular rotors is adsorbed to a surface. The rotors can be energized by light absorption, but are otherwise locked in position or alternatively rotate slowly. Using polarized light, the adsorbed rotors are turned as an ensemble. Chemical agent (analyte) binding that alters the rotary efficiency would be detected by sensitive polarized absorption techniques. The mechanism of the SAPS detection can be mechanical, chemical, or photochemical: only a change in rotary efficiency is required. To achieve the goal of SAPS detection, new spectroscopic technique, polarized Normal Incidence Cavity Ringdown Spectroscopy (polarized NICRDS), was developed. The technique employs very sensitive and general Cavity Ringdown absorption spectroscopy along with the ability to perform polarized absorption measurements. Polarized absorption offers the ability to measure the angular position of molecular chromophores. In the new experiments a thin layer of SAPS sensors (roughly corresponding to a monolayer coverage on a surface) immobilized in PMMA. The PMMA layer is less than 100~nm thick and is spin-coated onto a flat fused-silica substrate. The new technique was applied to study the photoisomerization-driven rotary motion of a family of SAPS actuators based on a family of substituted dibenzofulvene rotors based upon 9-(2,2,2- triphenylethylidene)fluorene. By varying the substitution to include moieties such as nitro, amino, and cyano the absorption spectrum and the quantum efficiency of photoisomerization can be varied. This SAPS effect was readily detected by polarized NICRDS. The amino substituted SAPS actuator binds H+ to form an ammonium species which was shown to have a much larger quantum efficiency for photoisomerization. A thin layer of immobilized amino actuators were then shown by polarized NICRDS

  13. Investigation of (235)U, (226)Ra, (232)Th, (40)K, (137)Cs, and heavy metal concentrations in Anzali international wetland using high-resolution gamma-ray spectrometry and atomic absorption spectroscopy.

    Science.gov (United States)

    Zare, Mohammad Reza; Kamali, Mahdi; Fallahi Kapourchali, Maryam; Bagheri, Hashem; Khoram Bagheri, Mahdi; Abedini, Ali; Pakzad, Hamid Reza

    2016-02-01

    Measurements of natural radioactivity levels and heavy metals in sediment and soil samples of the Anzali international wetland were carried out by two HPGe-gamma ray spectrometry and atomic absorption spectroscopy techniques. The concentrations of (235)U, (226)Ra, (232)Th, (40)K, and (137)Cs in sediment samples ranged between 1.05 ± 0.51-5.81 ± 0.61, 18.06 ± 0.63-33.36 ± .0.34, 17.57 ± 0.38-45.84 ± 6.23, 371.88 ± 6.36-652.28 ± 11.60, and 0.43 ± 0.06-63.35 ± 0.94 Bq/kg, while in the soil samples they vary between 2.36-5.97, 22.71-38.37, 29.27-42.89, 472.66-533, and 1.05-9.60 Bq/kg for (235)U, (226)Ra, (232)Th, (40)K, and (137)Cs, respectively. Present results are compared with the available literature data and also with the world average values. The radium equivalent activity was well below the defined limit of 370 Bq/kg. The external hazard indices were found to be less than 1, indicating a low dose. Heavy metal concentrations were found to decrease in order as Fe > Mn > Sr > Zn > Cu > Cr > Ni > Pb > Co > Cd. These measurements will serve as background reference levels for the Anzali wetland. PMID:26490904

  14. Electro-optic properties of hybrid solgel doped with a nonlinear chromophore with large hyperpolarizability.

    Science.gov (United States)

    Zhang, Hong Xi; Lu, Dong; Peyghambarian, Nasser; Fallahi, Mahmoud; Luo, Jing Dong; Chen, Bao Quan; Jen, Alex K Y

    2005-01-15

    We report the electro-optic properties of hybrid silica solgel doped with a nonlinear chromophore with large hyperpolarizability. Electro-optic coefficients of higher than 30 pm/V have been obtained. Moreover, the electro-optic coefficients have good temporal stability and show promise for the development of high-speed electro-optic devices. PMID:15675685

  15. Nucleic-Acid-Binding Chromophores as Efficient Indicators of Aptamer-Target Interactions

    Directory of Open Access Journals (Sweden)

    Kwabena Sarpong

    2012-01-01

    Full Text Available The binding affinity and specificity of nucleic acid aptamers have made them valuable candidates for use as sensors in diagnostic applications. In particular, chromophore-functionalized aptamers offer a relatively simple format for detection and quantification of target molecules. We describe the use of nucleic-acid-staining reagents as an effective tool for detecting and signaling aptamer-target interactions. Aptamers varying in size and structure and targeting a range of molecules have been used in conjunction with commercially available chromophores to indicate and quantify the presence of cognate targets with high sensitivity and selectivity. Our assay precludes the covalent modification of nucleic acids and relies on the differential fluorescence signal of chromophores when complexed with aptamers with or without their cognate target. We also evaluate factors that are critical for the stability of the complex between the aptamer and chromophore in presence or absence of target molecules. Our results indicate the possibility of controlling those factors to enhance the sensitivity of target detection by the aptamers used in such assays.

  16. Energy transfer studies of dye chromophores in modified zirconium phosphate framework

    Energy Technology Data Exchange (ETDEWEB)

    Liu, Qing; Yan, Haijiao; Su, Yumin [College of Chemistry and Materials Science, Hebei Normal University, Shijiazhuang 050024, Hebei Province (China); Shi, Shikao, E-mail: ssk02@mails.tsinghua.edu.cn [College of Chemistry and Materials Science, Hebei Normal University, Shijiazhuang 050024, Hebei Province (China); Ye, Jianping [Key Laboratory of Photochemistry, Institute of Chemistry Chinese Academy of Science, Beijing 100080 (China)

    2014-08-01

    In this paper, a layered inorganic compound—modified zirconium phosphate was used as a framework to assemble fluorescein and rhodamine B dye chromophores. After the dye chromophores were bound to the layered framework, the evident energy transfer process from fluorescein (donor) to rhodamine B (acceptor) was observed, resulting in the dramatic luminescence enhancement for rhodamine B. Without the framework, such energy transfer was absent in aqueous solutions. The results manifest that the lamellar inorganic framework can provide suitable microenvironment to organize the dye chromophores in elaborate arrangements, and promote the intermolecular energy transfer. In addition, the fluorescent lifetime of the donor in different surroundings was analyzed, which further confirmed the energy transfer via a nonradiative process. - Highlights: • A modified zirconium phosphate was applied as a framework to assemble dye chromophores. • After Fl and RhB dyes were bound to the framework, the luminescence intensity for RhB dye was greatly enhanced. • The energy transfer process from Fl to RhB was confirmed in the framework. • The result is useful in the design of light harvesting complexes and photon antennas.

  17. Synthesis and characterization of multifunctional copolyimide incorporating triarylamine and NLO chromophore in backbone

    Institute of Scientific and Technical Information of China (English)

    2001-01-01

    Presents the synthesis of Copolyimide containing triarylamine andNLO chromophore in backbone by azo coupling of 4-nitrobenzenediazonium tetrafloroborate to copoly(amic acid) in organic solvent and characterized by IR and UV-Vis spectra, which had high glass transition temperatrue and big second-order nonlinear optical coefficient x(2).

  18. Production of Chromophoric Dissolved Organic Matter from Mangrove Leaf Litter and Floating Sargassum Colonies

    Science.gov (United States)

    Chromophoric dissolved organic matter (CDOM) strongly absorbs solar radiation in the blue-green and serves as the primary attenuator of water column ultraviolet radiation (UV-R). CDOM interferes with remote sensing of ocean chlorophyll and can control UV-R-induced damage to light...

  19. Effect of Solvation on Electron Detachment and Excitation Energies of a Green Fluorescent Protein Chromophore Variant.

    Science.gov (United States)

    Bose, Samik; Chakrabarty, Suman; Ghosh, Debashree

    2016-05-19

    Hybrid quantum mechanics/molecular mechanics (QM/MM) is applied to the fluorinated green fluorescent protein (GFP) chromophore (DFHBDI) in its deprotonated form to understand the solvatochromic shifts in its vertical detachment energy (VDE) and vertical excitation energy (VEE). This variant of the GFP chromophore becomes fluorescent in an RNA environment and has a wide range of applications in biomedical and biochemical fields. From microsolvation studies, we benchmark (with respect to full QM) the accuracy of our QM/MM calculations with effective fragment potential (EFP) as the MM method of choice. We show that while the solvatochromic shift in the VEE is minimal (0.1 eV blue shift) and its polarization component is only 0.03 eV, the effect of the solvent on the VDE is quite large (3.85 eV). We also show by accurate calculations on the solvatochromic shift of the VDE that polarization accounts for ∼0.23 eV and therefore cannot be neglected. The effect of the counterions on the VDE of the deprotonated chromophore in solvation is studied in detail, and a charge-smearing scheme is suggested for charged chromophores. PMID:27116477

  20. Theoretical Studies on the First Hyperpolarizabilities of One-dimensional Donor-bridge-acceptor Chromophores

    Institute of Scientific and Technical Information of China (English)

    LIAO Rong-Bao; LIU Cai-Ping; SA Rong-Jian; LI Fu-Jun; HE Jian-Gang; WU Ke-Chen

    2008-01-01

    The ground-state dipole moments and second-order nonlinear optical (NLO) pro-perties of a series of one-dimensional (1D) chromophores with donor-bridge-acceptor (D-B-A) structures have been investigated by using the second-order Mφller-Plesset (MP2) and density functional theory (DFT) methods with the basis set of 6-31+G(d). According to the calculated results, the relationship between the molecular static first hyperpolarizability (βμ) and the directions of electron transition has been summarized. In terms of the sign of βμ, these 1D organic chromophores were classified into two categories: type Ⅰ with negative βμand type Ⅱ bearing positive βμ The analyses show that the remarkable difference of the first hyperpolarizabilities between Ⅰ and Ⅱ chromophores is associated mainly with the electrostatic interaction between terminal groups and the transport electrons in excited states. Moreover, different from the popular viewpoint, the obtained results also show that most of this series of 1D D-B-A molecules are more charge-separated in the ground states than in the excited states. As a whole, this theoretical investigation, to some extent, can be considered as a useful reference in designing the NLO chromophores with large first hyperpolarizabilities.

  1. Structure-reactivity relationships between fluorescent chromophores and antioxidant activity of grain and sweet sorghum seeds

    Science.gov (United States)

    Polyphenolic structures, such as tannins, are the putative cause of a variety of seed functions including bird/insect resistance and antioxidant activity. Structure-reactivity relationships are necessary to understand the influence of polyphenolic chromophore structures on the tannin content and fr...

  2. 近红外吸收法测定船舶含油污水浓度的研究%Near Infrared Absorption Method for the Determination of the Concentration of the Ship Oily Water

    Institute of Scientific and Technical Information of China (English)

    游学军

    2012-01-01

    针对传统的船舶油污排放检测都是事后检测,不能进行在线检测,检测手段复杂,工序繁琐的问题,提出近红外吸收法技术来实现船舶排放的含油污水浓度的在线检测.测试过程中样品不需要萃取、分离等预处理,故无需药剂,无消耗品,没有污染.由于在测量中水样和传感器没有直接接触,减少了悬浮颗粒物对测量产生的影响.与各种传统的油污检测方法不同,利用近红外光吸收原理进行船舶漏油的在线检测有准确性高、涵盖区域较大、无滞后性、价格低廉的特点.%According to the spread of traditional oil pollution emission testing are later check and can't online testing, detection means is complex, process trival problem. Near infrared absorption method proposed technology to realize ship emissions of oily water concentration of on-line detection. During the test sample extraction, separation and don't need, so no drug, pretreatment no consumables, no pollution. As in the measurement of water samples and sensor no direct contact, reduced the suspension particle on measuring influence. With all the existing measuring method of sewage oil share, compared with near infrared absorption principle of oil share the detection of the high sensitivity and test a wider range, strong real-time property, the characteristics of low cost.

  3. Tuning the Electronic Absorption of Protein-Embedded All-trans-Retinal

    Energy Technology Data Exchange (ETDEWEB)

    Wang, Wenjing [Michigan State Univ., East Lansing, MI (United States); Nossoni, Zahra [Michigan State Univ., East Lansing, MI (United States); Berbasova, Tetyana [Michigan State Univ., East Lansing, MI (United States); Watson, Camille T. [Michigan State Univ., East Lansing, MI (United States); Yapici, Ipek [Michigan State Univ., East Lansing, MI (United States); Lee, Kin Sing Stephen [Michigan State Univ., East Lansing, MI (United States); Vasileiou, Chrysoula [Michigan State Univ., East Lansing, MI (United States); Geiger, James H. [Michigan State Univ., East Lansing, MI (United States); Borhan, Babak [Michigan State Univ., East Lansing, MI (United States)

    2014-10-02

    Protein-chromophore interactions are a central component of a wide variety of critical biological processes such as color vision and photosynthesis. To understand the fundamental elements that contribute to spectral tuning of a chromophore inside the protein cavity, we redesigned human cellular retinol binding protein II (hCRBPII) to fully encapsulate all-trans-retinal and form a covalent bond as a protonated Schiff base. The system, using rational mutagenesis designed to alter the electrostatic environment within the binding pocket of the host protein, enabled regulation of the absorption maximum of the pigment in the range of 425 to 644 nanometers. Moreover, with only nine point mutations, the hCRBPII mutants induced a systematic shift in the absorption profile of all-trans-retinal of more than 200 nanometers across the visible spectrum.

  4. Control of the orientational order and nonlinear optical response of the "push-pull" chromophore RuPZn via specific incorporation into densely packed monolayer ensembles of an amphiphilic 4-helix bundle peptide: second harmonic generation at high chromophore densities.

    Science.gov (United States)

    Gonella, Grazia; Dai, Hai-Lung; Fry, H Christopher; Therien, Michael J; Krishnan, Venkata; Tronin, Andrey; Blasie, J Kent

    2010-07-21

    The macroscopic nonlinear optical response of the "push-pull" chromophore RuPZn incorporated into a single monolayer of the amphiphilic 4-helix bundle peptide (AP0) covalently attached to a solid substrate at high in-plane density has been measured. The second-order susceptibility, chi(zzz), was found to be in the range of approximately 15 x 10(-9) esu, consistent with a coherent sum of the nonlinear contributions from the individual chromophores (beta) as previously measured in isotropic solution through hyper-Rayleigh scattering as well as estimated from theoretical calculations. The microscopic hyperpolarizability of the RuPZn chromophore is preserved upon incorporation into the peptide monolayer, suggesting that the chromophore-chromophore interactions in the densely packed ensemble do not substantially affect the first-order molecular hyperpolarizability. The polarization angle dependence of the second harmonic signal reveals that the chromophore is vectorially oriented in the two-dimensional ensemble. Analysis of the order parameter together with information obtained from grazing incidence X-ray diffraction help in determining the chromophore orientation within the AP0-RuPZn monolayer. Taking into account an average pitch angle of approximately 20 degrees characterizing the coiled-coil structure of the peptide bundle, the width of the bundle's tilt angle distribution should be sigma < or = 20 degrees, resulting in a mean value of the tilt angle 23 degrees < or = theta(0) < or = 37 degrees. PMID:20578696

  5. Femtosecond infrared spectroscopy of channelrhodopsin-1 chromophore isomerization.

    Science.gov (United States)

    Stensitzki, T; Yang, Y; Muders, V; Schlesinger, R; Heberle, J; Heyne, K

    2016-07-01

    Vibrational dynamics of the retinal all-trans to 13-cis photoisomerization in channelrhodopsin-1 from Chlamydomonas augustae (CaChR1) was investigated by femtosecond visible pump mid-IR probe spectroscopy. After photoexcitation, the transient infrared absorption of C-C stretching modes was detected. The formation of the 13-cis photoproduct marker band at 1193 cm(-1) was observed within the time resolution of 0.3 ps. We estimated the photoisomerization yield to (60 ± 6) %. We found additional time constants of (0.55 ± 0.05) ps and (6 ± 1) ps, assigned to cooling, and cooling processes with a back-reaction pathway. An additional bleaching band demonstrates the ground-state heterogeneity of retinal. PMID:27191011

  6. Generation dependent singlet–singlet annihilation within multichromophoric dendrimers studied by polychromatic transient absorption

    OpenAIRE

    Jordens, Sven; Belder, Gino De; Lor, Marc; Schweitzer, Gerd; Van der Auweraer, Mark; Weil, Tanja; Herrmann, Andreas; Wiesler, Uwe-M.; Müllen, Klaus; de Schryver, Frans C.

    2003-01-01

    Intramolecular kinetic processes in a series of shape-persistent meta- and para-substituted polyphenylene dendrimers bearing different peryleneimide chromophores at the rim have been investigated using time-resolved polychromatic transient absorption measurements. The influence of the generation number and different substitution patterns upon these processes was revealed by comparing different compounds. In particular, in multichromophoric systems a singlet–singlet annihilation process was de...

  7. Optimization of spectral sensitivities of mosaic five-band camera for estimating chromophore densities from skin images including shading and surface reflections

    Science.gov (United States)

    Hirose, Misa; Akaho, Rina; Maita, Chikashi; Sugawara, Mai; Tsumura, Norimichi

    2016-06-01

    In this paper, the spectral sensitivities of a mosaic five-band camera were optimized using a numerical skin phantom to perform the separation of chromophore densities, shading and surface reflection. To simulate the numerical skin phantom, the spectral reflectance of skin was first calculated by Monte Carlo simulation of photon migration for different concentrations of melanin, blood and oxygen saturation levels. The melanin and hemoglobin concentration distributions used in the numerical skin phantom were obtained from actual skin images by independent component analysis. The calculated components were assigned as concentration distributions. The spectral sensitivities of the camera were then optimized using a nonlinear technique to estimate the spectral reflectance for skin separation. In this optimization, the spectral sensitivities were assumed to be normally distributed, and the sensor arrangement was identical to that of a conventional mosaic five-band camera. Our findings demonstrated that spectral estimation could be significantly improved by optimizing the spectral sensitivities.

  8. Development and Experimental Study of Phantoms for Mapping Skin Chromophores

    Science.gov (United States)

    Silapetere, A.; Spigulis, J.; Saknite, I.

    2014-06-01

    Skin chromophore phantoms are widely used for better understanding of the light interaction with tissue and for calibration of skin diagnostic imaging techniques. In this work, different phantoms were examined and compared in order to find biologically equivalent substances that are the most promising for this purpose. For mimicking the skin medium and layered structure, a fibrin matrix with epidermal and dermal cell inclusion was used. Synthesized bilirubin, red blood cells and nigrosin were taken as absorbers. For spectral analysis of the developed phantoms a computer-aided multispectral imaging system Nuance 2.4 (Cambridge Research & Instrumentation, Inc., USA) was used. In this study, skin phantoms were created using such substances as bilirubin, melanin, haemoglobin and nigrosin Mūsdienās multispektrālās attēlošanas iekārtas izmanto ādas parametru un fizioloģisko procesu aprakstīšanai gan pētniecības, gan diagnostikas nolūkiem. Iekārtu darbības uzlabošanai ir nepieciešams labāk saprast gaismas mijiedarbību ar audiem, kā arī veikt šo iekārtu kalibrēšanu ar ādas maketu. Redzamā un tuvā infrasarkanā optiskā diapazona spektroskopijā ir svarīgi ādas maketi, kas simulē audu slāņaino struktūru un ķīmiskās īpašības, kā arī maketi, kas ir bioloģiski līdzvērtīgi. Šajā pētījumā tika izveidots ādas makets no bioloģiskām un ķīmiski sintezētām struktūrām. Ādas maketa izveidei tika izmantota fibrīna matrica ar dermālo un epidermālo šūnu piejaukumu, lai imitētu ādas slāņaino struktūru. Fibrīna matrica tiek veidota no 0,47 ml asins plazmas, 0,4 ml fizioloģiskā šķīduma, 0,8 μl treneksāmskābes un 89,4 μl kalcija glukanāta. Izveidoto matricu ievieto šūnu inkubatorā, lai tā polimerizētos. Nākošais slānis tiek veidots ar dermālo šūnu piejaukumu (180-270 šūnas), un pēdējais fibrīna matriksa slānis tiek veidots ar epidermālo šūnu piejaukumu (270 šūnas) un šūnu aug

  9. UV Absorption and Luminescence Spectra of [2.2]Paracyclophane Phenyl Derivatives

    Science.gov (United States)

    Nurmukhametov, R. N.; Shapovalov, A. V.; Antonov, D. Yu.

    2016-03-01

    UV absorption, fluorescence emission and excitation, and fluorescence excitation synchronous scanning spectra at 298 K and fluorescence and phosphorescence spectra at 77 K were measured for solutions of 4-phenyl- ( I) and 4,12-( II), 4,15- ( III), and 4,16-diphenyl derivatives ( IV) of [2.2]paracyclophane. Analysis of absorption spectra shows that they are determined by two types of chromophores (biphenyl and paracyclophane). It was shown that their weak long wavelength band (310-340 nm) and fluorescence band are governed by the same electron transition from the ground to an excimer-like excited state, as in the case of the unsubstituted macrocycle. Phenyl substitution shows only a weak influence on the energy of this transition. Strong absorption bands of I- IV at 230-310 nm originate from electronic transitions of biphenyl groups in these molecules. The strong bands of isomeric II- IV (with two biphenyl chromophores) differ significantly. It was supposed that this phenomenon was caused by different resonance interaction between electron oscillators (transitions) of the two biphenyl chromophores leading to different splitting of their excited states.

  10. A XANES study of chromophores in archaeological glass

    Energy Technology Data Exchange (ETDEWEB)

    Arletti, Rossella [Universita di Torino, Dipartimento di Scienze della Terra, Torino (Italy); Quartieri, Simona [Universita di Messina, Dipartimento di Fisica e Scienze della Terra, Messina S' Agata (Italy); Freestone, Ian C. [Institute of Archaeology, London (United Kingdom)

    2013-04-15

    We applied X-ray absorption near edge spectroscopy (XANES) to obtain information on the origin of glass colour of several archaeological samples and on the oxidation conditions employed during their production. We studied a series of selected glass fragments - mainly from excavated primary and secondary production centres and dated to the first millennium AD - containing iron and manganese in a wide compositional range. In most of the studied samples iron is rather oxidised, while Mn K-edge XANES data show that, in all the studied glasses, Mn is mainly present in its reduced form (predominantly 2+), with the possible subordinate presence of Mn{sup 3+}. The most oxidised samples are the HIMT (high iron manganese titanium) glasses, while the less oxidised ones belong to the primary natron glass series from the early Islamic tank furnaces at Bet Eliezer (Israel), and to the series coming from a Roman glass workshop excavated in Basinghall Street, London. In these glasses, iron is approximately equally distributed over the 2+ and 3+ oxidation states. The XANES analyses of two glasses which had been deliberately decolourized using Sb- and Mn-based decolourizers demonstrate that Sb is more effective than Mn as oxidant. (orig.)

  11. A XANES study of chromophores in archaeological glass

    Science.gov (United States)

    Arletti, Rossella; Quartieri, Simona; Freestone, Ian C.

    2013-04-01

    We applied X-ray absorption near edge spectroscopy (XANES) to obtain information on the origin of glass colour of several archaeological samples and on the oxidation conditions employed during their production. We studied a series of selected glass fragments—mainly from excavated primary and secondary production centres and dated to the first millennium AD—containing iron and manganese in a wide compositional range. In most of the studied samples iron is rather oxidised, while Mn K-edge XANES data show that, in all the studied glasses, Mn is mainly present in its reduced form (predominantly 2+), with the possible subordinate presence of Mn3+. The most oxidised samples are the HIMT (high iron manganese titanium) glasses, while the less oxidised ones belong to the primary natron glass series from the early Islamic tank furnaces at Bet Eliezer (Israel), and to the series coming from a Roman glass workshop excavated in Basinghall Street, London. In these glasses, iron is approximately equally distributed over the 2+ and 3+ oxidation states. The XANES analyses of two glasses which had been deliberately decolourized using Sb- and Mn-based decolourizers demonstrate that Sb is more effective than Mn as oxidant.

  12. A new ultrasonic-assisted cloud-point-extraction procedure for pre-concentration and determination of ultra-trace levels of copper in selected beverages and foods by flame atomic absorption spectrometry.

    Science.gov (United States)

    Altunay, Nail; Gürkan, Ramazan; Orhan, Ulaş

    2015-01-01

    A new ultrasonic-assisted cloud-point-extraction (UA-CPE) method was developed for the pre-concentration of Cu(II) in selected beverage and food samples prior to flame atomic absorption spectrometric (FAAS) analysis. For this purpose, Safranin T was used as an ion-pairing reagent based on charge transfer in the presence of oxalate as the primary chelating agent at pH 10. Non-ionic surfactant, poly(ethyleneglycol-mono-p-nonylphenylether) (PONPE 7.5) was used as an extracting agent in the presence of NH4Cl as the salting out agent. The variables affecting UA-CPE efficiency were optimised in detail. The linear range for Cu(II) at pH 10 was 0.02-70 µg l(-)(1) with a very low detection limit of 6.10 ng l(-)(1), while the linear range for Cu(I) at pH 8.5 was 0.08-125 µg l(-)(1) with a detection limit of 24.4 ng l(-)(1). The relative standard deviation (RSD %) was in the range of 2.15-4.80% (n = 5). The method was successfully applied to the quantification of Cu(II), Cu(I) and total Cu in selected beverage and food samples. The accuracy of the developed method was demonstrated by the analysis of two standard reference materials (SRMs) as well as recoveries of spiked samples.

  13. Thermodynamic modeling of poorly complexing metals in concentrated electrolyte solutions: an X-ray absorption and UV-Vis spectroscopic study of Ni(II) in the NiCl2-MgCl2-H2O system.

    Science.gov (United States)

    Zhang, Ning; Brugger, Joël; Etschmann, Barbara; Ngothai, Yung; Zeng, Dewen

    2015-01-01

    Knowledge of the structure and speciation of aqueous Ni(II)-chloride complexes is important for understanding Ni behavior in hydrometallurgical extraction. The effect of concentration on the first-shell structure of Ni(II) in aqueous NiCl2 and NiCl2-MgCl2 solutions was investigated by Ni K edge X-ray absorption (XAS) and UV-Vis spectroscopy at ambient conditions. Both techniques show that no large structural change (e.g., transition from octahedral to tetrahedral-like configuration) occurs. Both methods confirm that the Ni(II) aqua ion (with six coordinated water molecules at RNi-O = 2.07(2) Å) is the dominant species over the whole NiCl2 concentration range. However, XANES, EXAFS and UV-Vis data show subtle changes at high salinity (> 2 mol∙kg(-1) NiCl2), which are consistent with the formation of small amounts of the NiCl+ complex (up to 0.44(23) Cl at a Ni-Cl distance of 2.35(2) Å in 5.05 mol∙kg(-1) NiCl2) in the pure NiCl2 solutions. At high Cl:Ni ratio in the NiCl2-MgCl2-H2O solutions, small amounts of [NiCl2]0 are also present. We developed a speciation-based mixed-solvent electrolyte (MSE) model to describe activity-composition relationships in NiCl2-MgCl2-H2O solutions, and at the same time predict Ni(II) speciation that is consistent with our XAS and UV-Vis data and with existing literature data up to the solubility limit, resolving a long-standing uncertainty about the role of chloride complexing in this system. PMID:25885410

  14. Thermodynamic modeling of poorly complexing metals in concentrated electrolyte solutions: an X-ray absorption and UV-Vis spectroscopic study of Ni(II in the NiCl2-MgCl2-H2O system.

    Directory of Open Access Journals (Sweden)

    Ning Zhang

    Full Text Available Knowledge of the structure and speciation of aqueous Ni(II-chloride complexes is important for understanding Ni behavior in hydrometallurgical extraction. The effect of concentration on the first-shell structure of Ni(II in aqueous NiCl2 and NiCl2-MgCl2 solutions was investigated by Ni K edge X-ray absorption (XAS and UV-Vis spectroscopy at ambient conditions. Both techniques show that no large structural change (e.g., transition from octahedral to tetrahedral-like configuration occurs. Both methods confirm that the Ni(II aqua ion (with six coordinated water molecules at RNi-O = 2.07(2 Å is the dominant species over the whole NiCl2 concentration range. However, XANES, EXAFS and UV-Vis data show subtle changes at high salinity (> 2 mol∙kg(-1 NiCl2, which are consistent with the formation of small amounts of the NiCl+ complex (up to 0.44(23 Cl at a Ni-Cl distance of 2.35(2 Å in 5.05 mol∙kg(-1 NiCl2 in the pure NiCl2 solutions. At high Cl:Ni ratio in the NiCl2-MgCl2-H2O solutions, small amounts of [NiCl2]0 are also present. We developed a speciation-based mixed-solvent electrolyte (MSE model to describe activity-composition relationships in NiCl2-MgCl2-H2O solutions, and at the same time predict Ni(II speciation that is consistent with our XAS and UV-Vis data and with existing literature data up to the solubility limit, resolving a long-standing uncertainty about the role of chloride complexing in this system.

  15. Estimation of chromophoric dissolved organic matter in the Mississippi and Atchafalaya river plume regions using above-surface hyperspectral remote sensing

    Science.gov (United States)

    Zhu, Weining; Yu, Qian; Tian, Yong Q.; Chen, Robert F.; Gardner, G. Bernard

    2011-02-01

    A method for the inversion of hyperspectral remote sensing was developed to determine the absorption coefficient for chromophoric dissolved organic matter (CDOM) in the Mississippi and Atchafalaya river plume regions and the northern Gulf of Mexico, where water types vary from Case 1 to turbid Case 2. Above-surface hyperspectral remote sensing data were measured by a ship-mounted spectroradiometer and then used to estimate CDOM. Simultaneously, water absorption and attenuation coefficients, CDOM and chlorophyll fluorescence, turbidities, and other related water properties were also measured at very high resolution (0.5-2 m) using in situ, underwater, and flow-through (shipboard, pumped) optical sensors. We separate ag, the absorption coefficient a of CDOM, from adg (a of CDOM and nonalgal particles) based on two absorption-backscattering relationships. The first is between ad (a of nonalgal particles) and bbp (total particulate backscattering coefficient), and the second is between ap (a of total particles) and bbp. These two relationships are referred as ad-based and ap-based methods, respectively. Consequently, based on Lee's quasi-analytical algorithm (QAA), we developed the so-called Extended Quasi-Analytical Algorithm (QAA-E) to decompose adg, using both ad-based and ap-based methods. The absorption-backscattering relationships and the QAA-E were tested using synthetic and in situ data from the International Ocean-Colour Coordinating Group (IOCCG) as well as our own field data. The results indicate the ad-based method is relatively better than the ap-based method. The accuracy of CDOM estimation is significantly improved by separating ag from adg (R2 = 0.81 and 0.65 for synthetic and in situ data, respectively). The sensitivities of the newly introduced coefficients were also analyzed to ensure QAA-E is robust.

  16. PHOTOREACTIVITY OF CHROMOPHORIC DISSOLVED ORGANIC MATTER (CDOM) DERIVED FROM DECOMPOSITION OF VARIOUS VASCULAR PLANT AND ALGAL SOURCES

    Science.gov (United States)

    Chromophoric dissolved organic matter (CDOM) in aquatic environments is derived from the microbial decomposition of terrestrial and microbial organic matter. Here we present results of studies of the spectral properties and photoreactivity of the CDOM derived from several organi...

  17. Non-adiabatic dynamics of isolated green fluorescent protein chromophore anion

    International Nuclear Information System (INIS)

    On-the-fly ab initio molecular dynamics calculations have been performed to investigate the relaxation mechanism of green fluorescent protein chromophore anion under vacuum. The CASSCF surface hopping simulation method based on Zhu-Nakamura theory is applied to present the real-time conformational changes of the target molecule. The static calculations and dynamics simulation results suggest that not only the twisting motion around bridging bonds between imidazolinone and phenoxy groups but the strength mode of C=O and pyramidalization character of bridging atom are major factors on the ultrafast fluorescence quenching process of the isolated chromophore anion. The abovementioned factors bring the molecule to the vicinity of conical intersections on its potential energy surface and to finish the internal conversion process. A Hula-like twisting pattern is displayed during the relaxation process and the entire decay process disfavors a photoswitching pattern which corresponds to cis-trans photoisomerization

  18. Low dipole moment large β electrooptic chromophores based on exocyclic double bond conjugated bridge

    Institute of Scientific and Technical Information of China (English)

    2001-01-01

    Novel low dipole moment (μ) and large first hyperpolarizability (β) electrooptic chromophores have been designed based on the special characteristic of reversed dipole moment in the excited state of exocyclic double bond (ECDB) conjugated bridge by the optimization of the substituted method, and their electronic and second-order nonlinear optical properties have been theoretically investigated by employing the AM1/FF and ZINDO/S-CI approaches. By extending the conjugation length and optimizing the donor/acceptor strength, the oscillator strength of the excited transition that contributes to the molecular nonlinearity can be further enhanced. The designed chromophores possess a larger figure of merit (FOM) than that of D) ground state dipole moment.``

  19. Photo-initiated dynamics and spectroscopy of the deprotonated Green Fluorescent Protein chromophore

    DEFF Research Database (Denmark)

    Bochenkova, Anastasia; Andersen, Lars Henrik

    2013-01-01

    . Knowledge of intrinsic properties of the GFP photoabsorbing molecular unit is a prerequisite in understanding the atomic-scale interactions that play a key role for the diverse functioning of these proteins. Here, we show how recent developments in action and photoelectron spectroscopy combined with state......-of-the-art electronic structure theory provide valuable insights into photo-initiated quantum dynamics and enable to disclose mechanisms of multiple intrinsic excited-state decay channels in the bare GFP chromophore anion. When taken out of the protein, the deprotonated chromophore exhibits the ultrafast excited state...... efficiently compete with each other in spite of their inherently different intrinsic timescales. The reason behind this is an efficient coupling between the nuclear and electronic motion in the photo-initiated dynamics, where the energy may be transferred from nuclei to electrons and from electrons to nuclei...

  20. Non-adiabatic dynamics of isolated green fluorescent protein chromophore anion

    Science.gov (United States)

    Zhao, Li; Zhou, Pan-Wang; Li, Bin; Gao, Ai-Hua; Han, Ke-Li

    2014-12-01

    On-the-fly ab initio molecular dynamics calculations have been performed to investigate the relaxation mechanism of green fluorescent protein chromophore anion under vacuum. The CASSCF surface hopping simulation method based on Zhu-Nakamura theory is applied to present the real-time conformational changes of the target molecule. The static calculations and dynamics simulation results suggest that not only the twisting motion around bridging bonds between imidazolinone and phenoxy groups but the strength mode of C=O and pyramidalization character of bridging atom are major factors on the ultrafast fluorescence quenching process of the isolated chromophore anion. The abovementioned factors bring the molecule to the vicinity of conical intersections on its potential energy surface and to finish the internal conversion process. A Hula-like twisting pattern is displayed during the relaxation process and the entire decay process disfavors a photoswitching pattern which corresponds to cis-trans photoisomerization.

  1. Non-adiabatic dynamics of isolated green fluorescent protein chromophore anion

    Energy Technology Data Exchange (ETDEWEB)

    Zhao, Li, E-mail: zhaoli282@dicp.ac.cn, E-mail: pwzhou@dicp.ac.cn, E-mail: libinsnet@dicp.ac.cn, E-mail: aihuagao@dicp.ac.cn; Gao, Ai-Hua, E-mail: zhaoli282@dicp.ac.cn, E-mail: pwzhou@dicp.ac.cn, E-mail: libinsnet@dicp.ac.cn, E-mail: aihuagao@dicp.ac.cn [State Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023 (China); University of the Chinese Academy of Sciences, Beijing 100049 (China); Zhou, Pan-Wang, E-mail: zhaoli282@dicp.ac.cn, E-mail: pwzhou@dicp.ac.cn, E-mail: libinsnet@dicp.ac.cn, E-mail: aihuagao@dicp.ac.cn; Li, Bin, E-mail: zhaoli282@dicp.ac.cn, E-mail: pwzhou@dicp.ac.cn, E-mail: libinsnet@dicp.ac.cn, E-mail: aihuagao@dicp.ac.cn; Han, Ke-Li, E-mail: klhan@dicp.ac.cn [State Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023 (China)

    2014-12-21

    On-the-fly ab initio molecular dynamics calculations have been performed to investigate the relaxation mechanism of green fluorescent protein chromophore anion under vacuum. The CASSCF surface hopping simulation method based on Zhu-Nakamura theory is applied to present the real-time conformational changes of the target molecule. The static calculations and dynamics simulation results suggest that not only the twisting motion around bridging bonds between imidazolinone and phenoxy groups but the strength mode of C=O and pyramidalization character of bridging atom are major factors on the ultrafast fluorescence quenching process of the isolated chromophore anion. The abovementioned factors bring the molecule to the vicinity of conical intersections on its potential energy surface and to finish the internal conversion process. A Hula-like twisting pattern is displayed during the relaxation process and the entire decay process disfavors a photoswitching pattern which corresponds to cis-trans photoisomerization.

  2. Synthesis and nonlinear optical properties of a peripherally functionalized hyperbranched polymer by DR1 chromophores.

    Science.gov (United States)

    Scarpaci, Annabelle; Blart, Errol; Montembault, Véronique; Fontaine, Laurent; Rodriguez, Vincent; Odobel, Fabrice

    2009-08-01

    The first peripheral postfunctionalization of a hyperbranched polyimide by nonlinear optic chromophores (DR1 derivative) was achieved using two different routes. The first one consists in the esterification of the terminal carboxylic acid groups, whereas the second is based on copper-catalyzed Huisgen reaction of the terminal propargylic ester groups. The resulting polymers display good solubility in classical organic solvents and good filmability because thick films can be prepared (up to 2.7 mum). The second-order nonlinear optical properties were measured by SHG at 1064 nm and we show that these hyperbranched polymers exhibit good poling efficiency and good thermal stability since the electro-optic activity remains stable up to 130 degrees C. These results illustrate the potential of hyperbranched polymers to host second-order nonlinear optical chromophores to replace dendrimers or classical linear polymers generally used in this area. PMID:20355797

  3. Synthesis of a novel organic nonlinear optical chromophore and the Testing for µg β Value

    Science.gov (United States)

    Han, Li-Kun; Jiang, Ya-Dong; Li, Wei; Cai, Yuan

    2007-01-01

    A novel second-order nonlinear optical chromophore (DCDHF-2-V) was synthesized from 3-Hydroxy-3-methyl-2-butanae, propanedinitrile and 4-diethylaminobenzaldehyde by aldol condensation reaction. Molecular structural characterization was investigated by elemental analysis, FTIR, and 1H-NMR spectra. The melting point obtained from DSC thermogram was almost 251 °C, and the compound shows a thermal stability up to 270 °C. Second-order NLO properties of the chromophore were measured by solvatochromic method. From the quantum-mechanical two-level model, it can be obtained that the µg β value of DCDHF-2-V is 6520 × 10-48esu at the wavelength of 1064 nm.

  4. Cellular chromophores and signaling in low level light therapy

    Science.gov (United States)

    Hamblin, Michael R.; Demidova-Rice, Tatiana N.

    2007-02-01

    The use of low levels of visible or near infrared light (LLLT) for reducing pain, inflammation and edema, promoting healing of wounds, deeper tissues and nerves, and preventing tissue damage by reducing cellular apoptosis has been known for almost forty years since the invention of lasers. Originally thought to be a peculiar property of laser light (soft or cold lasers), the subject has now broadened to include photobiomodulation and photobiostimulation using non-coherent light. Despite many reports of positive findings from experiments conducted in vitro, in animal models and in randomized controlled clinical trials, LLLT remains controversial. This likely is due to two main reasons; firstly the biochemical mechanisms underlying the positive effects are incompletely understood, and secondly the complexity of rationally choosing amongst a large number of illumination parameters such as wavelength, fluence, power density, pulse structure and treatment timing has led to the publication of a number of negative studies as well as many positive ones. In recent years major advances have been made in understanding the mechanisms that operate at the cellular and tissue levels during LLLT. Mitochondria are thought to be the main site for the initial effects of light and specifically cytochrome c oxidase that has absorption peaks in the red and near infrared regions of the electromagnetic spectrum matches the action spectra of LLLT effects. The discovery that cells employ nitric oxide (NO) synthesized in the mitochondria by neuronal nitric oxide synthase, to regulate respiration by competitive binding to the oxygen binding of cytochrome c oxidase, now suggests how LLLT can affect cell metabolism. If LLLT photodissociates inhibitory NO from cytochrome c oxidase, this would explain increased ATP production, modulation of reactive oxygen species, reduction and prevention of apoptosis, stimulation of angiogenesis, increase of blood flow and induction of transcription factors. In

  5. Blue-Coloured Highly Efficient Dye-Sensitized Solar Cells by Implementing the Diketopyrrolopyrrole Chromophore

    OpenAIRE

    Jun-Ho Yum; Thomas W. Holcombe; Yongjoo Kim; Kasparas Rakstys; Thomas Moehl; Joel Teuscher; Delcamp, Jared H.; Nazeeruddin, Mohammed K.; Michael Grätzel

    2013-01-01

    The paradigm shift in dye sensitized solar cells (DSCs) – towards donor- π bridge-acceptor (D-π-A) dyes – increases the performances of DSCs and challenges established design principles. Framed by this shifting landscape, a series of four diketopyrrolopyrrole (DPP)-based sensitizers utilizing the donor-chromophore-anchor (D-C-A) motif were investigated computationally, spectroscopically, and fabricated by systematic evaluation of finished photovoltaic cells. In all cases, the [Co(bpy)3]3+/2+ ...

  6. SuperNova, a monomeric photosensitizing fluorescent protein for chromophore-assisted light inactivation

    OpenAIRE

    Kiwamu Takemoto; Tomoki Matsuda; Naoki Sakai; Donald Fu; Masanori Noda; Susumu Uchiyama; Ippei Kotera; Yoshiyuki Arai; Masataka Horiuchi; Kiichi Fukui; Tokiyoshi Ayabe; Fuyuhiko Inagaki; Hiroshi Suzuki; Takeharu Nagai

    2013-01-01

    Chromophore-assisted light inactivation (CALI) is a powerful technique for acute perturbation of biomolecules in a spatio-temporally defined manner in living specimen with reactive oxygen species (ROS). Whereas a chemical photosensitizer including fluorescein must be added to specimens exogenously and cannot be restricted to particular cells or sub-cellular compartments, a genetically-encoded photosensitizer, KillerRed, can be controlled in its expression by tissue specific promoters or subce...

  7. A Diabatic Three-State Representation of Photoisomerization in the Green Fluorescent Protein Chromophore

    OpenAIRE

    Olsen, Seth; McKenzie, Ross H.

    2009-01-01

    We give a quantum chemical description of bridge photoisomerization reaction of green fluorescent protein (GFP) chromophores using a representation over three diabatic states. Bridge photoisomerization leads to non-radiative decay, and competes with fluorescence in these systems. In the protein, this pathway is suppressed, leading to fluorescence. Understanding the electronic structure of the photoisomerization is a prerequisite to understanding how the protein suppresses this pathway and pre...

  8. The third chromophore of DNA photolyase: Trp-277 of Escherichia coli DNA photolyase repairs thymine dimers by direct electron transfer.

    OpenAIRE

    Kim, S. T.; Li, Y. F.; Sancar, A

    1992-01-01

    Photolyases repair pyrimidine dimers in DNA by converting the light energy of 300- to 500-nm photons into chemical energy. Enzymes from various organisms contain two chromophore cofactors (FADH2 and either methenyltetrahydrofolate or 8-hydroxy-5-deazaflavin) that absorb the low-energy photons and initiate splitting of the cyclobutane ring by a radical mechanism. Here, we show that, in addition to these two chromophores, in the far UV range, direct excitation of one specific tryptophan residue...

  9. Chromophores from photolyzed ammonia reacting with acetylene: Application to Jupiter's Great Red Spot

    Science.gov (United States)

    Carlson, R. W.; Baines, K. H.; Anderson, M. S.; Filacchione, G.; Simon, A. A.

    2016-08-01

    The high altitude of Jupiter's Great Red Spot (GRS) may enhance the upward flux of gaseous ammonia (NH3) into the high troposphere, where NH3 molecules can be photodissociated and initiate a chain of chemical reactions with downwelling acetylene molecules (C2H2). These reactions, experimentally studied earlier by (Ferris and Ishikawa [1987] Nature 326, 777-778) and (Ferris and Ishikawa [1988] J. Amer. Chem. Soc. 110, 4306-4312), produce chromophores that absorb in the visible and ultraviolet regions. In this work we photolyzed mixtures of NH3 and C2H2 using ultraviolet radiation with a wavelength of 214 nm and measured the spectral transmission of the deposited films in the visible region (400-740 nm). From these transmission data we estimated the imaginary indices of refraction. Assuming that ammonia grains at the top of the GRS clouds are coated with this material, we performed layered sphere and radiative transfer calculations to predict GRS reflection spectra. Comparison of those results with observed and previously unreported Cassini visible spectra and with true-color images of the GRS show that the unknown GRS chromophore is spectrally consistent with the coupled NH3-C2H2 photochemical products produced in our laboratory experiments. Using high-resolution mass spectrometry and infrared spectroscopy we infer that the chromophore-containing residue is composed of aliphatic azine, azo, and diazo compounds.

  10. Modeling trans-cis chromophore isomerization for the asFP595 kindling protein

    Science.gov (United States)

    Grigorenko, Bella L.; Nemukhin, Alexander V.

    2007-02-01

    We present the results of modeling properties of the chromophore, 2-acetyl-4-(p-hydroxybenzylidene)-1-methyl-5- imidazolone (AHBMI), from the newly discovered fluorescent protein asFP595 inside the protein environment by using the combined quantum mechanical - molecular mechanical (QM/MM) method. In this approach, the chromophore unit and the side chains of the nearest amino acid residues are assigned to the quantum subsystem. The starting coordinates of heavy atoms were taken from the relevant crystal structures of the protein. Hydrogen atoms were added manually, and the structure of the model protein system was optimized by using QM/MM energy minimization for the trans-form of the chromophore. The Hartree-Fock/6-31G quantum chemical approximation and the AMBER force field parameters were employed in geometry optimization. The points on potential energy surfaces of the ground and first and second excited electronic states were computed with the complete active space self-consistent field approximation in the quantum subsystem under different choices of the QM/MM partitioning. Possible pathways for the trans-cis photo isomerization presumably responsible for the kindling properties of asFP595 as well as other mechanisms of photo excitation are discussed.

  11. Chromophores from photolyzed ammonia reacting with acetylene: Application to Jupiters Great Red Spot

    Science.gov (United States)

    Carlson, Robert W.; Baines, Kevin H.; Anderson, M. S.; Filacchione, G.; Simon, A. A.

    2016-01-01

    The high altitude of Jupiter's Great Red Spot (GRS) may enhance the upward flux of gaseous ammonia (NH3 ) into the high troposphere, where NH3 molecules can be photodissociated and initiate a chain of chemical reactions with downwelling acetylene molecules (C2H2 ). These reactions, experimentally studied earlier by (Ferris and Ishikawa [1987] Nature 326, 777-778) and (Ferris and Ishikawa [1988] J. Amer. Chem. Soc. 110, 4306-4312), produce chromophores that absorb in the visible and ultraviolet regions. In this work we photolyzed mixtures of NH3 and C2H2 using ultraviolet radiation with a wavelength of 214 nm and measured the spectral transmission of the deposited films in the visible region (400-740 nm). From these transmission data we estimated the imaginary indices of refraction. Assuming that ammonia grains at the top of the GRS clouds are coated with this material, we performed layered sphere and radiative transfer calculations to predict GRS reflection spectra. Comparison of those results with observed and previously unreported Cassini visible spectra and with true-color images of the GRS show that the unknown GRS chromophore is spectrally consistent with the coupled NH3-C2H2 photochemical products produced in our laboratory experiments. Using high-resolution mass spectrometry and infrared spectroscopy we infer that the chromophore-containing residue is composed of aliphatic azine, azo, and diazo compounds.

  12. Minimal domain of bacterial phytochrome required for chromophore binding and fluorescence

    Science.gov (United States)

    Rumyantsev, Konstantin A.; Shcherbakova, Daria M.; Zakharova, Natalia I.; Emelyanov, Alexander V.; Turoverov, Konstantin K.; Verkhusha, Vladislav V.

    2015-12-01

    Fluorescent proteins (FP) are used to study various biological processes. Recently, a series of near-infrared (NIR) FPs based on bacterial phytochromes was developed. Finding ways to improve NIR FPs is becoming progressively important. By applying rational design and molecular evolution we have engineered R. palustris bacterial phytochrome into a single-domain NIR FP of 19.6 kDa, termed GAF-FP, which is 2-fold and 1.4-fold smaller than bacterial phytochrome-based NIR FPs and GFP-like proteins, respectively. Engineering of GAF-FP involved a substitution of 15% of its amino acids and a deletion of the knot structure. GAF-FP covalently binds two tetrapyrrole chromophores, biliverdin (BV) and phycocyanobilin (PCB). With the BV chromophore GAF-FP absorbs at 635 nm and fluoresces at 670 nm. With the PCB chromophore GAF-FP becomes blue-shifted and absorbs at 625 nm and fluoresces at 657 nm. The GAF-FP structure has a high tolerance to small peptide insertions. The small size of GAF-FP and its additional absorbance band in the violet range has allowed for designing a chimeric protein with Renilla luciferase. The chimera exhibits efficient non-radiative energy transfer from luciferase to GAF-FP, resulting in NIR bioluminescence. This study opens the way for engineering of small NIR FPs and NIR luciferases from bacterial phytochromes.

  13. Water dimer absorption of visible light

    OpenAIRE

    Hargrove, J

    2007-01-01

    International audience Laboratory measurements of water vapor absorption using cavity ring-down spectroscopy revealed a broad absorption at 405 nm with a quadratic dependence on water monomer concentration, a similar absorption with a linear component at 532 nm, and only linear absorption at 570 nm in the vicinity of water monomer peaks. D2O absorption is weaker and linear at 405 nm. Van't Hoff plots constructed at 405.26 nm suggest that for dimerization, Keq=0.056±0.02 atm?1, ?H°301 K=?16...

  14. A polarizable embedding DFT study of one-photon absorption in fluorescent proteins

    DEFF Research Database (Denmark)

    Beerepoot, Maarten; Steindal, Arnfinn H.; Kongsted, Jacob;

    2013-01-01

    A theoretical study of the one-photon absorption of five fluorescent proteins (FPs) is presented. The absorption properties are calculated using a polarizable embedding approach combined with density functional theory (PE-DFT) on the wild-type green fluorescent protein (wtGFP) and several of its...... optimization of the chromophores within a frozen protein environment is needed in order to reproduce the experimental trends. Explicit account of polarization in the force field is not needed to yield the correct trend between the different FPs, but is necessary for reproducing the experimentally observed red...

  15. Non-degenerate two photon absorption enhancement for laser dyes by precise lock-in detection

    International Nuclear Information System (INIS)

    This study demonstrates a measurement system for a non-degenerate two-photon absorption (NDTPA) spectrum. The NDTPA light sources are a white light super continuum beam (WLSC, 500 ∼ 720 nm) and a fundamental beam (798 nm) from a Ti:Sapphire laser. A reliable broadband NDTPA spectrum is acquired in a single-shot detection procedure using a 128-channel lock-in amplifier. The NDTPA spectra for several common laser dyes are measured. Two photon absorption cross section enhancements are found in the experiment and validated by theoretical calculation for all of the chromophores

  16. Non-degenerate two photon absorption enhancement for laser dyes by precise lock-in detection

    Energy Technology Data Exchange (ETDEWEB)

    Xue, B. [Advanced Ultrafast Laser Research Center and Department of Engineering Science, Faculty of Informatics and Engineering, University of Electro-Communications, 1-5-1 Chofugaoka, Chofu, Tokyo, 182-8585 (Japan); Japan Science and Technology Agency, CREST, 5 Sanbancho, Chiyoda-ku, Tokyo, 102-0075 (Japan); Katan, C. [Institut des Sciences Chimiques de Rennes, UMR 6226 CNRS-Université Rennes 1, 35042 Rennes (France); Bjorgaard, J. A. [Center for Nonlinear Studies, Los Alamos National Laboratory, Los Alamos, NM (United States); Theoretical Division, Los Alamos National Laboratory, Los Alamos, NM (United States); Kobayashi, T., E-mail: kobayashi@ils.uec.ac.jp [Advanced Ultrafast Laser Research Center and Department of Engineering Science, Faculty of Informatics and Engineering, University of Electro-Communications, 1-5-1 Chofugaoka, Chofu, Tokyo, 182-8585 (Japan); Japan Science and Technology Agency, CREST, 5 Sanbancho, Chiyoda-ku, Tokyo, 102-0075 (Japan); Department of Electrophysics, National Chiao-Tung University, Hsinchu, 30010, Taiwan (China); Institute of Laser Engineering, Osaka University, 2-6 Yamada-oka, Suita, Osaka, 565-0871 (Japan)

    2015-12-15

    This study demonstrates a measurement system for a non-degenerate two-photon absorption (NDTPA) spectrum. The NDTPA light sources are a white light super continuum beam (WLSC, 500 ∼ 720 nm) and a fundamental beam (798 nm) from a Ti:Sapphire laser. A reliable broadband NDTPA spectrum is acquired in a single-shot detection procedure using a 128-channel lock-in amplifier. The NDTPA spectra for several common laser dyes are measured. Two photon absorption cross section enhancements are found in the experiment and validated by theoretical calculation for all of the chromophores.

  17. Synthesis and properties of poly(1-phenyL~(-1)-octyne)s containing stereogenic and chromophoric pendant groups

    Institute of Scientific and Technical Information of China (English)

    LAM Jacky W. Y.; QIN AnJun; JIM Cathy K. W.; LU Ping; YUAN WangZhang; DONG YongQiang; DONG YuPing; KWOK Hoi Sing; TANG Ben Zhong

    2009-01-01

    Poly(1-phenyL~(-1)-octyne)s containing different stereogenic and chromophoric pendants {-[(C_6H_(13))C=C(C_6H_4-p-CO_2-R)]_n- R=[(1S)-endo]-(-)-borneyl (P3), (1R,2S,5R)-(-)-menthyl(P4), -C_6H_4-p-(1R,2S,5R)-(-)-menthyl (P5), 2-napthyl (P6), 4-biphenylyl (P7)} have been designed and synthesized. The polymers are prepared in moderate yields by WCl6-Ph4Sn and possess high molecular weights (M_w up to 64000). The structures and properties of the polymers are characterized and evaluated by NMR, TGA, UV, CD, PL, and EL analyses. All the polymers are thermally stable and their temperatures for 5% weight loss locate in the range of 300 to 416℃ under nitrogen. The energy band gaps of all the polymers are ~3.0 eV. Polymers P4 and P5 show CD absorptions associated with the helicity of the polymer segments. Excitation of the THF solutions of P3-P7 by UV irradiation gives strong blue lights of ~485 nm with quantum yields higher than 20%. The thin films of the polymers also emit in the same spectral region, indicative of little aggregation-caused quenching of light emission. Multilayer EL devices with a configuration of ITO/Polymer:PVK/BCP/Alq_3/LiF/Al are constructed, which emit blue lights of ~487 nm. The maximum luminance and external quantum efficiency vary with the pendant groups, with P6 exhibiting the highest external quantum efficiency of 0.16%. The spectra stability of the EL devices is outstanding and the EL peak maximum experiences little change with the applied voltage.

  18. Synthesis and properties of poly(1-phenyl-1-octyne)s containing stereogenic and chromophoric pendant groups

    Institute of Scientific and Technical Information of China (English)

    LAM; Jacky; W.Y.; JIM; Cathy; K.W.; KWOK; Hoi; Sing

    2009-01-01

    Poly(1-phenyl-1-octyne)s containing different stereogenic and chromophoric pendants {-[(C6H13)C=C(C6H4-p-CO2-R)]n-R=[(1S)-endo]-(-)-borneyl (P3), (1R,2S,5R)-(-)-menthyl (P4),―C6H4-p-(1R,2S,5R)-(-)-menthyl (P5), 2-napthyl (P6), 4-biphenylyl (P7)} have been designed and synthesized. The polymers are prepared in moderate yields by WCl6-Ph4Sn and possess high molecular weights (Mw up to 64000). The structures and properties of the polymers are characterized and evaluated by NMR, TGA, UV, CD, PL, and EL analyses. All the polymers are thermally stable and their temperatures for 5% weight loss locate in the range of 300 to 416℃ under nitrogen. The energy band gaps of all the polymers are ~3.0 eV. Polymers P4 and P5 show CD absorptions associated with the helicity of the polymer segments. Excitation of the THF solutions of P3―P7 by UV irradiation gives strong blue lights of ~485 nm with quantum yields higher than 20%. The thin films of the polymers also emit in the same spectral region, indicative of little aggregation-caused quenching of light emission. Multilayer EL devices with a configuration of ITO/Polymer:PVK/BCP/Alq3/LiF/Al are constructed, which emit blue lights of ~487 nm. The maximum luminance and external quantum efficiency vary with the pendant groups, with P6 exhibiting the highest external quantum efficiency of 0.16%. The spectra stability of the EL devices is outstanding and the EL peak maximum experiences little change with the applied voltage.

  19. Ultrafast excited-state excitation dynamics in a quasi-two-dimensional light-harvesting antenna based on ruthenium(II) and palladium(II) chromophores.

    Science.gov (United States)

    Dietzek, Benjamin; Kiefer, Wolfgang; Blumhoff, Jörg; Böttcher, Lars; Rau, Sven; Walther, Dirk; Uhlemann, Ute; Schmitt, Michael; Popp, Jürgen

    2006-06-23

    A detailed study on the excited-state-excitation migration taking place within the tetranuclear complex [{(tbbpy)(2)Ru(tmbi)}(2){Pd(allyl)}(2)](PF(6))(2) (tbbpy = 4,4'-di-tert-butyl-2,2'-bipyridine and tmbi = 5,6,5',6'-tetramethyl-2,2'-bibenzimidazolate) is presented. The charge transfer is initiated by the photoexcitation into the lowest metal-to-ligand charge-transfer (MLCT) band of one of the peripheral ruthenium(II) chromophores and terminates on the central structurally complex Pd(2) (II)(allyl)(2) subunit. Thus, the system under investigation can be thought of as a functional model for the photosynthesis reaction center in plants. The kinetic steps involved in the overall process are inferred from femtosecond time-resolved transient-grating kinetics recorded at spectral positions within the regions of ground-state bleach and transient absorption. The kinetics features a complex non-exponential time behavior and can be fitted to a bi-exponential rise (tau(1)> or =200 fs, tau(2) approximately 1.5 ps) and a mono- or bi-exponential decay, depending on the experimental situation. The data leads to the formulation of a model for the intramolecular excitation-hopping ascribing intersystem crossing and subsequent cooling as the two fastest observed processes. Following these initial steps, charge transfer from the ruthenium to the central complex Pd(2)(allyl)(2) moiety is observed with a characteristic time constant of 50 ps. A 220-ps component that is observed in the ground-state recovery only is attributed to excitation equilibration between the two identical Pd(allyl) chromophores. PMID:16628758

  20. Gastrointestinal citrate absorption in nephrolithiasis

    Science.gov (United States)

    Fegan, J.; Khan, R.; Poindexter, J.; Pak, C. Y.

    1992-01-01

    Gastrointestinal absorption of citrate was measured in stone patients with idiopathic hypocitraturia to determine if citrate malabsorption could account for low urinary citrate. Citrate absorption was measured directly from recovery of orally administered potassium citrate (40 mEq.) in the intestinal lavage fluid, using an intestinal washout technique. In 7 stone patients citrate absorption, serum citrate levels, peak citrate concentration in serum and area under the curve were not significantly different from those of 7 normal subjects. Citrate absorption was rapid and efficient in both groups, with 96 to 98% absorbed within 3 hours. The absorption of citrate was less efficient from a tablet preparation of potassium citrate than from a liquid preparation, probably due to a delayed release of citrate from wax matrix. However, citrate absorption from solid potassium citrate was still high at 91%, compared to 98% for a liquid preparation. Thus, hypocitraturia is unlikely to be due to an impaired gastrointestinal absorption of citrate in stone patients without overt bowel disease.

  1. π-Conjugated Organometallic Isoindigo Oligomer and Polymer Chromophores: Singlet and Triplet Excited State Dynamics and Application in Polymer Solar Cells.

    Science.gov (United States)

    Goswami, Subhadip; Gish, Melissa K; Wang, Jiliang; Winkel, Russell W; Papanikolas, John M; Schanze, Kirk S

    2015-12-01

    An isoindigo based π-conjugated oligomer and polymer that contain cyclometalated platinum(II) "auxochrome" units were subjected to photophysical characterization, and application of the polymer in bulk heterojunction polymer solar cells with PCBM acceptor was examined. The objective of the study was to explore the effect of the heavy metal centers on the excited state properties, in particular, intersystem crossing to a triplet (exciton) state, and further how this would influence the performance of the organometallic polymer in solar cells. The materials were characterized by electrochemistry, ground state absorption, emission, and picosecond-nanosecond transient absorption spectroscopy. Electrochemical measurements indicate that the cyclometalated units have a significant impact on the HOMO energy level of the chromophores, but little effect on the LUMO, which is consistent with localization of the LUMO on the isoindigo acceptor unit. Picosecond-nanosecond transient absorption spectroscopy reveals a transient with ∼100 ns lifetime that is assigned to a triplet excited state that is produced by intersystem crossing from a singlet state on a time scale of ∼130 ps. This is the first time that a triplet state has been observed for isoindigo π-conjugated chromophores. The performance of the polymer in bulk heterojunction solar cells was explored with PC61BM as an acceptor. The performance of the cells was optimum at a relatively high PCBM loading (1:6, polymer:PCBM), but the overall efficiency was relatively low with power conversion efficiency (PCE) of 0.22%. Atomic force microscopy of blend films reveals that the length scale of the phase separation decreases with increasing PCBM content, suggesting a reason for the increase in PCE with acceptor loading. Energetic considerations show that the triplet state in the polymer is too low in energy to undergo charge separation with PCBM. Further, due to the relatively low LUMO energy of the polymer, charge transfer

  2. Generalizing the correlated chromophore domain model of reversible photodegradation to include the effects of an applied electric field.

    Science.gov (United States)

    Anderson, Benjamin; Kuzyk, Mark G

    2014-03-01

    All observations of photodegradation and self-healing follow the predictions of the correlated chromophore domain model [Ramini et al., Polym. Chem. 4, 4948 (2013)]. In the present work, we generalize the domain model to describe the effects of an electric field by including induced dipole interactions between molecules in a domain by means of a self-consistent field approach. This electric field correction is added to the statistical mechanical model to calculate the distribution of domains that are central to healing. Also included in the model are the dynamics due to the formation of an irreversibly damaged species, which we propose involves damage to the polymer mediated through energy transfer from a dopant molecule after absorbing a photon. As in previous studies, the model with one-dimensional domains best explains all experimental data of the population as a function of time, temperature, intensity, concentration, and now applied electric field. Though the precise nature of a domain is yet to be determined, the fact that only one-dimensional domain models are consistent with observations suggests that they might be made of correlated dye molecules along polymer chains. Furthermore, the voltage-dependent measurements suggest that the largest polarizability axis of the molecules are oriented perpendicular to the chain. PMID:24730866

  3. Generalizing the correlated chromophore domain model of reversible photodegradation to include the effects of an applied electric field

    CERN Document Server

    Anderson, Benjamin

    2013-01-01

    All observations of photodegradation and self healing follow the predictions of the correlated chromophore domain model. [Ramini et.al. Polym. Chem., 2013, 4, 4948.] In the present work, we generalize the domain model to describe the effects of an electric field by including induced dipole interactions between molecules in a domain by means of a self-consistent field approach. This electric field correction is added to the statistical mechanical model to calculate the distribution of domains that are central to healing. Also included in the model are the dynamics due to the formation of an irreversibly damaged species. As in previous studies, the model with a one-dimensional domain best explains all experimental data of the population as a function of time, temperature, intensity, concentration, and now applied electric field. Though the nature of a domain is yet to be determined, the fact that only one-dimensional domain models are consistent with observations suggests that they might be made of correlated d...

  4. 不同盐度胁迫对芦荟生长和离子吸收分配的影响%Effects of Salt Concentration on Growth, Ion Absorption and Distribution of Aloe vera L.

    Institute of Scientific and Technical Information of China (English)

    马艳萍

    2012-01-01

    为探索芦荟对微咸水灌溉栽培的适应性,研究不同盐浓度对其生长和离子吸收分配的影响.结果表明,长期(120天)以含盐溶液灌溉栽培,盐浓度达200 mmol/L NaCl显著抑制芦荟生长,100 mmol/LNaCl对芦荟生长的抑制作用显著减轻,50 mmol/L NaCl不抑制芦荟生长.同时,以50 mmol/L NaCl溶液灌溉对芦荟盐分离子吸收分配影响轻微,但盐浓度达100 mmol/LNaCl对芦荟影响显著:根、茎、叶中K+含量显著下降,Na+、Cl-含量显著增大,K+/Na+大幅减小.X-射线能谱分析结果进一步表明,叶片贮水组织是芦荟积累盐分离子的重要部位,但100 mmol/L NaCl胁迫下芦荟根尖和叶片细胞中的离子平衡受到显著干扰.结果说明,芦荟适于用微咸水灌溉栽培,叶片贮水组织在缓解其盐胁迫中可起重要作用.%To explore the adaptability of irrigating aloe with weakly brine water, the effects of different concentration salinity stresses on growth, ion absorption and distribution of aloe plants were investigated.Experimental results showed that irrigation with 200 mmol/L NaCl for 120 d significantly retarded aloe growth, but the negative effects of irrigating aloe with 100 mmol/L NaCl on aloe growth were significantly relieved, even irrigating with 50 mmol/L NaCl did not retard aloe growth.The effects of irrigating with 50 mmol/L NaCl on ion absorption, transportation and distribution of aloe plants were not significant, but irrigating with 100 mmol/L NaCl were significant: K + contents of root, stem and leaf significantly decreased, Na + and Cl- content significantly increased, K+Na+ ratio significantly decreased.X-ray microanalysis results further showed that leaf aqueous was a main part of accumulating salt ion but ion homeostasis in root and leaf cells of aloe plants were significantly interrupted under 100 mmol/L NaCl stress.The experiment results suggested that Aloe vera L.was suitable to be irrigated with weakly brine water, and leaf

  5. An inversion model based on salinity and remote sensing reflectance for estimating the phytoplankton absorption coefficient in the Saint Lawrence Estuary

    Science.gov (United States)

    Montes-Hugo, Martin; Xie, Huxiang

    2015-10-01

    The inversion of individual inherent optical properties (IOPs) is very challenging in optically complex waters and within the violet spectral range (i.e., 380-450 nm) due to the strong light attenuation caused by chromophoric dissolved organic matter, nonalgal particulates, and phytoplankton. Here we present a technique to better discriminate light absorption contributions due to phytoplankton based on a hybrid model (QAA-hybrid) that combines regional Saint Lawrence System estimates of IOPs derived from a quasi-analytical algorithm (hereafter QAA-SLE) and empirical relationships between salinity and IOPs. Preliminary results in the Saint Lawrence System during May 2000 and April 2001 showed that QAA-hybrid estimates of phytoplankton absorption coefficient at 443 nm have a smaller bias with respect to in situ measurements (root-mean-square deviation, RMSD = 0.156) than those derived from QAA-SLE (RMSD = 0.341). These results were valid for surface waters (i.e., 0-5 m depth) of the lower estuary with a salinity and chlorophyll-a concentration range of 22-28 psu and 2.1-13.8 mg m-3, respectively.

  6. Tuning the Protein-Induced Absorption Shifts of Retinal in Engineered Rhodopsin Mimics.

    Science.gov (United States)

    Suomivuori, Carl-Mikael; Lang, Lucas; Sundholm, Dage; Gamiz-Hernandez, Ana P; Kaila, Ville R I

    2016-06-01

    Rational design of light-capturing properties requires understanding the molecular and electronic structure of chromophores in their native chemical or biological environment. We employ here large-scale quantum chemical calculations to study the light-capturing properties of retinal in recently designed human cellular retinol binding protein II (hCRBPII) variants (Wang et al. Science, 2012, 338, 1340-1343). Our calculations show that these proteins absorb across a large part of the visible spectrum by combined polarization and electrostatic effects. These effects stabilize the ground or excited state energy levels of the retinal by perturbing the Schiff-base or β-ionone moieties of the chromophore, which in turn modulates the amount of charge transfer within the molecule. Based on the predicted tuning principles, we design putative in silico mutations that further shift the absorption properties of retinal in hCRBPII towards the ultraviolet and infrared regions of the spectrum. PMID:27120137

  7. Measurement of Liquid Concentration Fields Near Interface with Cocurrent Gas-Liquid Flow Absorption Using Holographic Interferometry%气液并流吸收过程中液相近界面浓度分布的全息干涉测量

    Institute of Scientific and Technical Information of China (English)

    郭莹; 袁希钢; 曾爱武; 余国琮

    2006-01-01

    Real-time laser holographic interferometry was applied to measure liquid concentrations of CO2 in the vicinity of gas-liquid free interface under the conditions of cocurrent gas-liquid flow for absorption of CO2 by ethanol. The influences of the Reynolds number on the measurable interface concentration and on the film thickness were discussed. The results show that CO2 concentration decreases exponentially along the mass transfer direction,and the concentration gradient increases as Reynolds number of either liquid or gas increases. CO2 concentrations fluctuate slightly along the direction of flow; on the whole, there is an increase in CO2 concentration. The investigation also demonstrated that film thickness decreases with the increase of Reynolds number of either of the two phases. Sherwood number representing the mass transfer coefficient was finally correlated as a function of the hydrodynamic parameters and the physical properties.

  8. Modulating the electronic structure of chromophores by chemical substituents for efficient energy transfer: application to fluorone.

    Science.gov (United States)

    Sand, Andrew M; Liu, Claire; Valentine, Andrew J S; Mazziotti, David A

    2014-08-01

    Strong electron correlation within a quasi-spin model of chromophores was recently shown to enhance exciton energy transfer significantly. Here we investigate how the modulation of the electronic structure of the chromophores by chemical substitution can enhance energy-transfer efficiency. Unlike previous work that does not consider the direct effect of the electronic structure on exciton dynamics, we add chemical substituents to the fluorone dimer to study the effect of electron-donating and electron-withdrawing substituents on exciton energy transfer. The exciton dynamics are studied from the solution of a quantum Liouville equation for an open system whose model Hamiltonian is derived from excited-state electronic structure calculations. Both van der Waals energies and coupling energies, arising from the Hellmann-Feynman force generated upon transferring the dimers from infinity to a finite separation, are built into the model Hamiltonian. Though these two effects are implicitly treated in dipole-based models, their explicit and separate treatment as discussed here is critical to forging the correct connection with the electronic structure calculations. We find that the addition of electron-donating substituents to the fluorone system results in an increase in exciton-transfer rates by factors ranging from 1.3-1.9. The computed oscillator strength is consistent with the recent experimental results on a larger heterodimer system containing fluorone. The oscillator strength increases with the addition of electron-donating substituents. Our results indicate that the study of chromophore networks via electronic structure will help in the future design of efficient synthetic light-harvesting systems. PMID:25062094

  9. Chromophore photophysics and dynamics in fluorescent proteins of the GFP family

    Science.gov (United States)

    Nienhaus, Karin; Nienhaus, G. Ulrich

    2016-11-01

    Proteins of the green fluorescent protein (GFP) family are indispensable for fluorescence imaging experiments in the life sciences, particularly of living specimens. Their essential role as genetically encoded fluorescence markers has motivated many researchers over the last 20 years to further advance and optimize these proteins by using protein engineering. Amino acids can be exchanged by site-specific mutagenesis, starting with naturally occurring proteins as templates. Optical properties of the fluorescent chromophore are strongly tuned by the surrounding protein environment, and a targeted modification of chromophore-protein interactions requires a profound knowledge of the underlying photophysics and photochemistry, which has by now been well established from a large number of structural and spectroscopic experiments and molecular-mechanical and quantum-mechanical computations on many variants of fluorescent proteins. Nevertheless, such rational engineering often does not meet with success and thus is complemented by random mutagenesis and selection based on the optical properties. In this topical review, we present an overview of the key structural and spectroscopic properties of fluorescent proteins. We address protein-chromophore interactions that govern ground state optical properties as well as processes occurring in the electronically excited state. Special emphasis is placed on photoactivation of fluorescent proteins. These light-induced reactions result in large structural changes that drastically alter the fluorescence properties of the protein, which enables some of the most exciting applications, including single particle tracking, pulse chase imaging and super-resolution imaging. We also present a few examples of fluorescent protein application in live-cell imaging experiments.

  10. Twisted Thiophene-Based Chromophores with Enhanced Intramolecular Charge Transfer for Cooperative Amplification of Third-Order Optical Nonlinearity.

    Science.gov (United States)

    Teran, Natasha B; He, Guang S; Baev, Alexander; Shi, Yanrong; Swihart, Mark T; Prasad, Paras N; Marks, Tobin J; Reynolds, John R

    2016-06-01

    Exploiting synergistic cooperation between multiple sources of optical nonlinearity, we report the design, synthesis, and nonlinear optical properties of a series of electron-rich thiophene-containing donor-acceptor chromophores with condensed π-systems and sterically regulated inter-aryl twist angles. These structures couple two key mechanisms underlying optical nonlinearity, namely, (i) intramolecular charge transfer, greatly enhanced by increased electron density and reduced aromaticity at chromophore thiophene rings and (ii) a twisted chromophore geometry, producing a manifold of close-lying excited states and dipole moment changes between ground and excited states that are nearly twice that of untwisted systems. Spectroscopic, electrochemical, and nonlinear Z-scan measurements, combined with quantum chemical calculations, illuminate relationships between molecular structure and mechanisms of enhancement of the nonlinear refractive index. Experiment and calculations together reveal ground-state structures that are strongly responsive to the solvent polarity, leading to substantial negative solvatochromism (Δλ ≈ 10(2) nm) and prevailing zwitterionic/aromatic structures in the solid state and in polar solvents. Ground-to-excited-state energy gaps below 2.0 eV are obtained in condensed π-systems, with lower energy gaps for twisted versus untwisted systems. The real part of the second hyperpolarizability in the twisted structures is much greater than the imaginary part, with the highest twist angle chromophore giving |Re(γ)/Im(γ)| ≈ 100, making such chromophores very promising for all-optical-switching applications. PMID:27232098

  11. Single-molecule spectroscopy and femtosecond transient absorption studies on the excitation energy transfer process in ApcE(1-240) dimers.

    Science.gov (United States)

    Long, Saran; Zhou, Meng; Tang, Kun; Zeng, Xiao-Li; Niu, Yingli; Guo, Qianjin; Zhao, Kai-Hong; Xia, Andong

    2015-05-28

    ApcE(1-240) dimers with one intrinsic phycocyanobilin (PCB) chromophore in each monomer that is truncated from the core-membrane linker (ApcE) of phycobilisomes (PBS) in Nostoc sp. PCC 7120 show a sharp and significantly red-shifted absorption. Two explanations either conformation-dependent Förster resonance energy transfer (FRET) or the strong exciton coupling limit have been proposed for red-shifted absorption. This is a classic example of the special pair in the photosynthetic light harvesting proteins, but the mechanism of this interaction is still a matter of intense debate. We report the studies using single-molecule and transient absorption spectra on the interaction in the special pair of ApcE dimers. Our results demonstrate the presence of conformation-dependent FRET between the two PCB chromophores in ApcE dimers. The broad distributions of fluorescence intensities, lifetimes and polarization difference from single-molecule measurements reveal the heterogeneity of local protein-pigment environments in ApcE dimers, where the same molecular structures but different protein environments are the main reason for the two PCB chromophores with different spectral properties. The excitation energy transfer rate between the donor and the acceptor about (110 ps)(-1) is determined from transient absorption measurements. The red-shifted absorption in ApcE dimers could result from more extending conformation, which shows another type of absorption redshift that does not depend on strong exciton coupling. The results here stress the importance of conformation-controlled spectral properties of the chemically identical chromophores, which could be a general feature to control energy/electron transfer, widely existing in the light harvesting complexes. PMID:25925197

  12. Construction of Multi-Chromophoric Spectra from Monomer Data: Applications to Resonant Energy Transfer

    CERN Document Server

    Chenu, Aurélia

    2016-01-01

    We develop a model that establishes a quantitative link between the physical properties of molecular aggregates and their constituent building blocks. The relation is built on the coherent potential approximation, calibrated against exact results, and proven reliable for a wide range of parameters. It provides a practical method to compute spectra and transfer rates in multi-chromophoric systems from experimentally accessible monomer data. Applications to F\\"orster energy transfer reveal optimal transfer rates as functions of both the system-bath coupling and intra-aggregate coherence.

  13. NIR bacteriochlorin chromophores accessed by Heck and Sonogashira cross-coupling reactions on a tetrabromobacteriochlorin derivative.

    Science.gov (United States)

    de Assis, Francisco F; Ferreira, Marco A B; Brocksom, Timothy J; de Oliveira, Kleber T

    2016-01-28

    The synthesis of a new tetrabromobacteriochlorin BCBr4 is reported having the 3,4-dibromo-1H-pyrrole-2-carbaldehyde (10) as the major precursor. The BCBr4 was successfully employed in Pd cross-coupling reactions with methyl acrylate, phenyl acetylene and 4-ethynylanisole. In all three cases, the desired tetra-coupled products were obtained in good to excellent yields, and present a significant red shift in the UV-Vis bands above 800 nm. DFT and TD-DFT theoretical analyses of the NIR bacteriochlorin chromophores were performed in order to evaluate the effect of β substitution on their electronic structures. PMID:26676846

  14. Band strengths of fundamentals and overtones of the CF and CH chromophores in CHD 2F

    Science.gov (United States)

    Kormann, C.; Lewerenz, M.; Quack, M.

    1988-08-01

    Large quantities of CHD 2F have been synthesized by a newly developed method. A complete survey of the fundamental and high overtone spectrum of CHD 2F covering the frequency range from 700 to 14000 cm -1 has been measured in part at close to Doppler-limited resolution. The overtone spectrum is found to be dominated by multiple Fermi resonances between CH-stretching and -bending states. The integrated band strengths of the fundamentals and overtones of the CF and CH chromophores have been measured and are interpreted using group additivity models and the Mecke dipole function.

  15. Combined Speciation Analysis by X-ray Absorption Near-Edge Structure Spectroscopy, Ion Chromatography, and Solid-Phase Microextraction Gas Chromatography-Mass Spectrometry To Evaluate Biotreatment of Concentrated Selenium Wastewaters

    NARCIS (Netherlands)

    Lenz, M.; Hullebusch, van E.D.; Farges, F.; Nikitenko, S.; Corvini, P.F.X.; Lens, P.N.L.

    2011-01-01

    In this study we evaluate the potential of anaerobic granular sludge as an inoculum for the bioremediation of selenium-contaminated waters using species-specific analytical methods. Solid species formed by microbial reduction were investigated using X-ray absorption near-edge structure (XANES) spect

  16. 3.1 $\\mu$m H$_{2}$O Ice Absorption in LINER-Type Ultraluminous Infrared Galaxies with Cool Far-Infrared Colors the Centrally-Concentrated Nature of Their Deeply Buried Energy Sources

    CERN Document Server

    Imanishi, M; Imanishi, Masatoshi; Maloney, Philip R.

    2003-01-01

    Ground-based 2.8--4.1 $\\mu$m slit spectra of the nuclei of seven ultraluminous infrared galaxies (ULIRGs) that are classified optically as LINERs and have cool far-infrared colors are presented. All the nuclei show 3.3 $\\mu$m polycyclic aromatic hydrocarbon (PAH) emission, with equivalent widths that are systematically lower than those in starburst galaxies. Strong 3.1 $\\mu$m H$_{2}$O ice absorption, with optical depth greater than 0.6, is also detected in five nuclei, and 3.4 $\\mu$m carbonaceous dust absorption is detected clearly in one of the five nuclei. It is quantitatively demonstrated that the large optical depths of the H$_{2}$O ice absorption in the five sources, and the 3.4 $\\mu$m absorption in one source, are incompatible with a geometry in which the energy sources are spatially mixed with dust and molecular gas, as is expected for a typical starburst, but instead require that a large amount of nuclear dust (including ice-covered grains) and molecular gas be distributed in a screen in front of the ...

  17. Calculating absorption shifts for retinal proteins: computational challenges.

    Science.gov (United States)

    Wanko, M; Hoffmann, M; Strodel, P; Koslowski, A; Thiel, W; Neese, F; Frauenheim, T; Elstner, M

    2005-03-01

    Rhodopsins can modulate the optical properties of their chromophores over a wide range of wavelengths. The mechanism for this spectral tuning is based on the response of the retinal chromophore to external stress and the interaction with the charged, polar, and polarizable amino acids of the protein environment and is connected to its large change in dipole moment upon excitation, its large electronic polarizability, and its structural flexibility. In this work, we investigate the accuracy of computational approaches for modeling changes in absorption energies with respect to changes in geometry and applied external electric fields. We illustrate the high sensitivity of absorption energies on the ground-state structure of retinal, which varies significantly with the computational method used for geometry optimization. The response to external fields, in particular to point charges which model the protein environment in combined quantum mechanical/molecular mechanical (QM/MM) applications, is a crucial feature, which is not properly represented by previously used methods, such as time-dependent density functional theory (TDDFT), complete active space self-consistent field (CASSCF), and Hartree-Fock (HF) or semiempirical configuration interaction singles (CIS). This is discussed in detail for bacteriorhodopsin (bR), a protein which blue-shifts retinal gas-phase excitation energy by about 0.5 eV. As a result of this study, we propose a procedure which combines structure optimization or molecular dynamics simulation using DFT methods with a semiempirical or ab initio multireference configuration interaction treatment of the excitation energies. Using a conventional QM/MM point charge representation of the protein environment, we obtain an absorption energy for bR of 2.34 eV. This result is already close to the experimental value of 2.18 eV, even without considering the effects of protein polarization, differential dispersion, and conformational sampling.

  18. Ion-Induced Dipole Interactions and Fragmentation Times : C$\\alpha$ -C$\\beta$ Chromophore Bond Dissociation Channel

    CERN Document Server

    Soorkia, Satchin; Kumar, Sunil; Pérot-Taillandier, Marie; Lucas, Bruno; Jouvet, Christophe; Barat, Michel; Fayeton, Jacqueline A

    2015-01-01

    The fragmentation times corresponding to the loss of the chromophore (C$\\alpha$-- C$\\beta$ bond dissociation channel) after photoexcitation at 263 nm have been investigated for several small peptides containing tryptophan or tyrosine. For tryptophan-containing peptides, the aromatic chromophore is lost as an ionic fragment (m/z 130), and the fragmentation time increases with the mass of the neutral fragment. In contrast, for tyrosine-containing peptides the aromatic chromophore is always lost as a neutral fragment (mass = 107 amu) and the fragmentation time is found to be fast (\\textless{}20 ns). These different behaviors are explained by the role of the postfragmentation interaction in the complex formed after the C$\\alpha$--C$\\beta$ bond cleavage.

  19. Active and silent chromophore isoforms for phytochrome Pr photoisomerization: An alternative evolutionary strategy to optimize photoreaction quantum yields

    Directory of Open Access Journals (Sweden)

    Yang Yang

    2014-01-01

    Full Text Available Photoisomerization of a protein bound chromophore is the basis of light sensing of many photoreceptors. We tracked Z-to-E photoisomerization of Cph1 phytochrome chromophore PCB in the Pr form in real-time. Two different phycocyanobilin (PCB ground state geometries with different ring D orientations have been identified. The pre-twisted and hydrogen bonded PCBa geometry exhibits a time constant of 30 ps and a quantum yield of photoproduct formation of 29%, about six times slower and ten times higher than that for the non-hydrogen bonded PCBb geometry. This new mechanism of pre-twisting the chromophore by protein-cofactor interaction optimizes yields of slow photoreactions and provides a scaffold for photoreceptor engineering.

  20. Active and silent chromophore isoforms for phytochrome Pr photoisomerization: An alternative evolutionary strategy to optimize photoreaction quantum yields.

    Science.gov (United States)

    Yang, Yang; Linke, Martin; von Haimberger, Theodore; Matute, Ricardo; González, Leticia; Schmieder, Peter; Heyne, Karsten

    2014-01-01

    Photoisomerization of a protein bound chromophore is the basis of light sensing of many photoreceptors. We tracked Z-to-E photoisomerization of Cph1 phytochrome chromophore PCB in the Pr form in real-time. Two different phycocyanobilin (PCB) ground state geometries with different ring D orientations have been identified. The pre-twisted and hydrogen bonded PCB(a) geometry exhibits a time constant of 30 ps and a quantum yield of photoproduct formation of 29%, about six times slower and ten times higher than that for the non-hydrogen bonded PCB(b) geometry. This new mechanism of pre-twisting the chromophore by protein-cofactor interaction optimizes yields of slow photoreactions and provides a scaffold for photoreceptor engineering. PMID:26798771

  1. Absorption of volatile ruthenium

    International Nuclear Information System (INIS)

    Phase equilibrium and mass transfer measurements for the absorption of ruthenium tetroxide (RuO4) in aqueous and nitric acid solutions have been completed. Low concentration phase equilibrium measurements confirm that the system obeys Henry's law across 4 orders of magnitude in concentration. Mass transfer measurements from turbulent gas flow indicate that the diffusivity of RuO4 in air may increase slightly as its concentration is reduced by 5-6 orders of magnitude. The reaction of RuO4 with nitrous acid and nitrites in solution results in precipitated or colloidal RuO2. Initial, immediate decomposition of ∼ 50% of the RuO4 occurs at RuO4: HNO2 mole ratios between 10:1 and 1:2, and does not vary systematically with mole ratio in this range. A mathematical model of the RuO4 decontamination performance of a packed bed scrubber has been developed, and validated experimentally with a laboratory QVF system. A survey of modelling approaches for predicting the ruthenium decontamination performance of off-gas condensers has been carried out. (author)

  2. Solid-State NMR Spectroscopic Study of Chromophore-Protein Interactions in the Pr Ground State of Plant Phytochrome A

    Institute of Scientific and Technical Information of China (English)

    Chen Song; Lars-Oliver Essen; Wolfgang G(a)rtner; Jon Hughes; J(o)rg Matysik

    2012-01-01

    Despite extensive study,the molecular structure of the chromophore-binding pocket of phytochrome A (phyA),the principal photoreceptor controlling photomorphogenesis in plants,has not yet been successfully resolved.Here,we report a series of two-dimensional (2-D) magic-angle spinning solid-state NMR experiments on the recombinant N-terminal,65-kDa PAS-GAF-PHY light-sensing module of phytochrome A3 from oat (Avena sativa),assembled with uniformly 13C- and 15N-labeled phycocyanobilin (u-[13C,15N]-PCB-As.phyA3).The Pr state of this protein was studied regarding the electronic structure of the chromophore and its interactions with the proximal amino acids.Using 2-D 13C-13C and 1H-15N experiments,a complete set of 13C and 15N assignments for the chromophore were obtained.Also,a large number of 1H-13C distance restraints between the chromophore and its binding pocket were revealed by interfacial heteronuclear correlation spectroscopy.13C doublings of the chromophore A-ring region and the C-ring carboxylate moiety,together with the observation of two Pr isoforms,Pr-Ⅰ and Pr-Ⅱ,demonstrate the local mobility of the chromophore and the plasticity of its protein environment.It appears that the interactions and dynamics in the binding pocket of phyA in the Pr state are remarkably similar to those of cyanobacterial phytochrome (Cph1).The N-terminus of the region modeled (residues 56-66 of phyA) is highly mobile.Differences in the regulatory processes involved in plant and Cph1 phytochromes are discussed.

  3. Solid-state NMR spectroscopic study of chromophore-protein interactions in the Pr ground state of plant phytochrome A.

    Science.gov (United States)

    Song, Chen; Essen, Lars-Oliver; Gärtner, Wolfgang; Hughes, Jon; Matysik, Jörg

    2012-05-01

    Despite extensive study, the molecular structure of the chromophore-binding pocket of phytochrome A (phyA), the principal photoreceptor controlling photomorphogenesis in plants, has not yet been successfully resolved. Here, we report a series of two-dimensional (2-D) magic-angle spinning solid-state NMR experiments on the recombinant N-terminal, 65-kDa PAS-GAF-PHY light-sensing module of phytochrome A3 from oat (Avena sativa), assembled with uniformly 13C- and 15N-labeled phycocyanobilin (u-[13C,15N]-PCB-As.phyA3). The Pr state of this protein was studied regarding the electronic structure of the chromophore and its interactions with the proximal amino acids. Using 2-D 13C-13C and 1H-15N experiments, a complete set of 13C and 15N assignments for the chromophore were obtained. Also, a large number of 1H-13C distance restraints between the chromophore and its binding pocket were revealed by interfacial heteronuclear correlation spectroscopy. 13C doublings of the chromophore A-ring region and the C-ring carboxylate moiety, together with the observation of two Pr isoforms, Pr-I and Pr-II, demonstrate the local mobility of the chromophore and the plasticity of its protein environment. It appears that the interactions and dynamics in the binding pocket of phyA in the Pr state are remarkably similar to those of cyanobacterial phytochrome (Cph1). The N-terminus of the region modeled (residues 56-66 of phyA) is highly mobile. Differences in the regulatory processes involved in plant and Cph1 phytochromes are discussed. PMID:22419823

  4. The mechanism of dehydration in chromophore maturation of wild-type green fluorescent protein: A theoretical study

    Science.gov (United States)

    Ma, Yingying; Yu, Jian-Guo; Sun, Qiao; Li, Zhen; Smith, Sean C.

    2015-07-01

    An interesting aspect of the green fluorescent protein (GFP) is its autocatalytic chromophore maturation. Numerous experimental studies have indicated that dehydration is the last step in the chromophore maturation process of wild-type GFP. Based on the crystal structure of wild-type GFP, the mechanism of the reverse reaction of dehydration was investigated by using density functional theory (DFT) in this study. Our results proposed that the dehydration is exothermic. Moreover, the rate-limiting step of the mechanism is the proton on guanidinium of Arg96 transferring to the β-carbon anion of Tyr66, which is consistent with the experimental observation.

  5. Performance of Popular XC-Functionals for the Description of Excitation Energies in GFP-Like Chromophore Models

    DEFF Research Database (Denmark)

    List, Nanna Holmgaard; Olsen, Jógvan Magnus Haugaard; Rocha-Rinza, Tomás;

    2012-01-01

    this task. We present an evaluation of the performance of commonly used XC-functionals for the prediction of excitation energies of GFP-like chromophores. In particular, we have considered the TD-DFT vertical excitation energies of chromophores displaying different charge states. We compare the quality...... of six XC-functionals, belonging to the GGA, hybrid and Coulomb-attenuated classes of XC-functionals, by comparison with RI-CC2 results. We find that none of the tested XC-functionals are capable of providing a simultaneous good description of all charge states and, interestingly, the hybrid functionals...

  6. Structure of the red fluorescent protein from a lancelet (Branchiostoma lanceolatum): a novel GYG chromophore covalently bound to a nearby tyrosine

    OpenAIRE

    Pletnev, Vladimir Z.; Pletneva, Nadya V.; Lukyanov, Konstantin A.; Souslova, Ekaterina A.; Fradkov, Arkady F.; Chudakov, Dmitry M.; Chepurnykh, Tatyana; Yampolsky, Ilia V.; Wlodawer, Alexander; Dauter, Zbigniew; Pletnev, Sergei

    2013-01-01

    The crystal structure of the novel red emitting fluorescent protein from lancelet Branchiostoma lanceolatum (Chordata) revealed an unusual five residues cyclic unit comprising Gly58-Tyr59-Gly60 chromophore, the following Phe61 and Tyr62 covalently bound to chromophore Tyr59.

  7. D-xylose absorption

    Science.gov (United States)

    ... this page: //medlineplus.gov/ency/article/003606.htm D-xylose absorption To use the sharing features on this page, please enable JavaScript. D-xylose absorption is a laboratory test to determine ...

  8. A new bis-tetraamine ligand with a chromophoric 4-(9-anthracenyl)-2,6-dimethylpyridinyl linker for glyphosate and ATP sensing.

    Science.gov (United States)

    Pouessel, Jacky; Abada, Sabah; Le Bris, Nathalie; Elhabiri, Mourad; Charbonnière, Loïc J; Tripier, Raphaël

    2013-04-14

    The synthesis of a new linear bis-tetraamine ligand L1, based on two 1,4,8,11-tetraazaundecane units grafted at the 2 and 6 positions of a pyridinyl linker substituted by an anthracenyl fluorophore in the para position, is described and anion complexation studies of L1 with anionic substrates are reported. The protonation pattern and the study of the binding properties of L1 in an aqueous medium with two anionic substrates, the nucleotide adenosine triphosphate (ATP) and the herbicide glyphosate (N-(phosphonomethyl)glycine, PMG), were investigated by means of potentiometry, NMR spectroscopy and absorption and emission spectroscopic techniques. To decipher the impact of the chromophoric linker on the complexation process and to highlight its optical properties, a comparison is established with its previously reported analog L2 devoid of the anthracenyl group. The results unambiguously show that the protonation and complexation properties are preserved despite the presence of the bulky linker, allowing for the use of L1 as a fluorescent sensor for ATP and PMG.

  9. Further advancement of differential optical absorption spectroscopy: theory of orthogonal optical absorption spectroscopy.

    Science.gov (United States)

    Liudchik, Alexander M

    2014-08-10

    A modified version of the differential optical absorption spectroscopy (DOAS) method is presented. The technique is called orthogonal optical absorption spectroscopy (OOAS). A widespread variant of DOAS with smoothing of the registered spectrum and absorption cross sections being made employing a polynomial regression is a particular case of OOAS. The concept of OOAS provides a variety of new possibilities for constructing computational schemes and analyzing the influence of different error sources on calculated concentrations. PMID:25320931

  10. A role for molecular compression in the post-translational formation of the Green Fluorescent Protein chromophore

    International Nuclear Information System (INIS)

    Graphical abstract: Using molecular dynamics simulations, we estimate the contribution of the Green Fluorescent Protein beta-barrel in promoting backbone cyclization, i.e. a crucial step in chromophore formation. - Abstract: Spontaneous chromophore formation is probably the key feature for the remarkable success of GFPs (Green Fluorescent Proteins) and related proteins in fluorescence microscopy. Though a quantitative analysis of the involved energetics still remains elusive, substantial progress has been made in identifying the steps of chromophore biosynthesis and the contribution of individual residues and surrounding protein matrix. The latter clearly enforces a peculiar configuration of the pre-cyclized chromophore-forming tripeptide. However, it is debated whether a mechanical compression is also at play in triggering backbone cyclization. Here, by molecular dynamics and potential of mean force calculations, we estimate the contribution of the protein scaffold in promoting the proximity of reacting atoms- and hence backbone cyclization - by a sort of compression mechanism. Comparing several mutants we highlight the role of some surrounding residues. Finally, we analyze the case of HAL (Histidine Ammonia-Lyase) active site, which undergoes an analogous cyclization reaction.

  11. A New Synthetic Strategy to Prepare a Polyphosphazene with Charge-Transporting Agents and Nonlinear Optical Chromophores as Side Chains

    Institute of Scientific and Technical Information of China (English)

    LI, Zhen; QIN, Jin-Gui; LI, Shao-Jun; YE, Cheng

    2003-01-01

    A new strategy, a post coupling method to develop the polyphosphazene (P2) functionalized with carbazolyl groups and nonlinear optical (NLO) chromophores, has been explored. P2 exhibits good solubility in common organic solvents.The poled film of P2 exhibits a resonant d33 value of 42 pm/Vby second harmonic generation (SHG) measurements.

  12. PHOTOCHROMISM AND LUMINESCENCE OF DOPANT CHROMOPHORES THROUGH TWO-PHOTON IONIZATION IN POLYMER FILMS

    Institute of Scientific and Technical Information of China (English)

    Masahide Yamamoto; Hideo Ohkita; Shinzaburo Ito

    2001-01-01

    Two-photon ionization and recombination processes of an aromatic chromophore doped in polymer films were studied and the features of these processes were discussed in relation to photofunctional polymers. An aromatic molecule having low ionization potential, e.g., N,N,N',N'-tetramethyl-p-phenylene diamine doped in poly(methyl methacrylate)(PMMA) film was easily photoionized by intense laser light excitation, giving a colored radical cation (photochromism) and a trapped electron in PMMA matrix. As a reversed process, the radical cation recombined with the trapped electron, showing discoloration and emitting luminescence, either isothermal luminescence (ITL), or thermoluminescence (TL). In this report,ITL and TL through the charge recombination process were studied and the luminescence was suggested as a mean of the read-out of photorecording.

  13. Depth profiling of laser-heated chromophores in biological tissues by pulsed photothermal radiometry

    International Nuclear Information System (INIS)

    A solution method is proposed to the inverse problem of determining the unknown initial temperature distribution in a laser-exposed test material from measurements provided by infrared radiometry. A Fredholm integral equation of the first kind is derived that relates the temporal evolution of the infrared signal amplitude to the unknown initial temperature distribution in the exposed test material. The singular-value decomposition is used to demonstrate the severely ill-posed nature of the derived inverse problem. Three inversion methods are used to estimate solutions for the initial temperature distribution. A nonnegatively constrained conjugate-gradient algorithm using early termination is found superior to unconstrained inversion methods and is applied to image the depth of laser-heated chromophores in human skin. Key words: constrained conjugate gradients, ill-posed problem, infrared radiometry, laser surgery, nonnegative, singular-value decomposition

  14. Synthesis, Characterization, Absorbance, Fluorescence and Non Linear Optical Properties of Some Donor Acceptor Chromophores

    Energy Technology Data Exchange (ETDEWEB)

    Asiri, Abdullah M.; Khan, Salman A.; Alamry, Kalid A. [King Abdulaziz University, Jeddah (Saudi Arabia); Al-Amoudi, Muhammed S. [Taif University, Taif (Saudi Arabia)

    2012-06-15

    Three carbazole chromophores featuring dicyano, cyano, ethyl acetate and dimethyl acetate groups as an acceptor moiety with a {pi}-conjugated spacer and N-methyl dibenzo[b]pyrole as donor were synthesized by Knovenagel condensation and characterized by IR, {sup 1}HNMR, {sup 13}CNMR, UV-vis, fluorescence spectroscopy, electrochemistry and theoretical B3LYP/6-311G* level whilst NLO properties and spectroscopic quantities were calculated. Calculations showed remarkable trend with HOMO located on the donor moiety and LUMO on the acceptors dicyano methylene, cyano, ethyl acetate methylene and dimethyl acetate methylene. In agreement with the calculations, solvatochromic, behavior intramolecular charge transfer band was observed in the visible region

  15. Calcium absorption and achlorhydria

    International Nuclear Information System (INIS)

    Defective absorption of calcium has been thought to exist in patients with achlorhydria. The author compared absorption of calcium in its carbonate form with that in a pH-adjusted citrate form in a group of 11 fasting patients with achlorhydria and in 9 fasting normal subjects. Fractional calcium absorption was measured by a modified double-isotope procedure with 0.25 g of calcium used as the carrier. Mean calcium absorption (+/- S.D.) in the patients with achlorhydria was 0.452 +/- 0.125 for citrate and 0.042 +/- 0.021 for carbonate (P less than 0.0001). Fractional calcium absorption in the normal subjects was 0.243 +/- 0.049 for citrate and 0.225 +/- 0.108 for carbonate (not significant). Absorption of calcium from carbonate in patients with achlorhydria was significantly lower than in the normal subjects and was lower than absorption from citrate in either group; absorption from citrate in those with achlorhydria was significantly higher than in the normal subjects, as well as higher than absorption from carbonate in either group. Administration of calcium carbonate as part of a normal breakfast resulted in completely normal absorption in the achlorhydric subjects. These results indicate that calcium absorption from carbonate is impaired in achlorhydria under fasting conditions. Since achlorhydria is common in older persons, calcium carbonate may not be the ideal dietary supplement

  16. Significant Improvement of Optoelectronic and Photovoltaic Properties by Incorporating Thiophene in a Solution-Processable D–A–D Modular Chromophore

    Directory of Open Access Journals (Sweden)

    Aaron M. Raynor

    2015-12-01

    Full Text Available Through the incorporation of a thiophene functionality, a novel solution-processable small organic chromophore was designed, synthesized and characterized for application in bulk-heterojunction solar cells. The new chromophore, (2Z,2′Z-2,2′-(1,4-phenylenebis(3-(5-(4-(diphenylaminophenylthiophen-2-ylacrylonitrile (coded as AS2, was based on a donor–acceptor–donor (D–A–D module where a simple triphenylamine unit served as an electron donor, 1,4-phenylenediacetonitrile as an electron acceptor, and a thiophene ring as the π-bridge embedded between the donor and acceptor functionalities. AS2 was isolated as brick-red, needle-shaped crystals, and was fully characterized by 1H- and 13C-NMR, IR, mass spectrometry and single crystal X-ray diffraction. The optoelectronic and photovoltaic properties of AS2 were compared with those of a structural analogue, (2Z,2′Z-2,2′-(1,4-phenylenebis(3-(4-(diphenylaminophenyl-acrylonitrile (AS1. Benefiting from the covalent thiophene bridges, compared to AS1 thin solid film, the AS2 film showed: (1 an enhancement of light-harvesting ability by 20%; (2 an increase in wavelength of the longest wavelength absorption maximum (497 nm vs. 470 nm and (3 a narrower optical band-gap (1.93 eV vs. 2.17 eV. Studies on the photovoltaic properties revealed that the best AS2-[6,6]-phenyl-C61-butyric acid methyl ester (PC61BM-based device showed an impressive enhanced power conversion efficiency of 4.10%, an approx. 3-fold increase with respect to the efficiency of the best AS1-based device (1.23%. These results clearly indicated that embodiment of thiophene functionality extended the molecular conjugation, thus enhancing the light-harvesting ability and short-circuit current density, while further improving the bulk-heterojunction device performance. To our knowledge, AS2 is the first example in the literature where a thiophene unit has been used in conjunction with a 1,4-phenylenediacetonitrile accepting

  17. Absorption and Fluorescence Spectroscopic Properties of 1- and 1,4-Silyl-Substituted Naphthalene Derivatives

    Directory of Open Access Journals (Sweden)

    Kazuhiko Mizuno

    2012-05-01

    Full Text Available Silyl-substituted naphthalene derivatives at the 1- and 1,4-positions were synthesized and their UV absorption, fluorescence spectroscopic properties, and fluorescence lifetimes were determined. Analysis of the results shows that the introduction of silyl groups at these positions of the naphthalene chromophore/fluorophore causes shifts of the absorption maxima to longer wavelengths and increases in fluorescence intensities. Bathochromic shifts of the absorption maxima and increases in fluorescence intensities are also promoted by the introduction of methoxy and cyano groups at the naphthalene 4- and 5-positions. In addition, the fluorescence of 9,10-dicyanoanthracene is efficiently quenched by these naphthalene derivatives with Stern-Volmer plot calculated rate constants that depend on the steric bulk of the silyl groups.

  18. Ochres and earths: Matrix and chromophores characterization of 19th and 20th century artist materials

    Science.gov (United States)

    Montagner, Cristina; Sanches, Diogo; Pedroso, Joana; Melo, Maria João; Vilarigues, Márcia

    2013-02-01

    The present paper describes the main results obtained from the characterization of a wide range of natural and synthetic ochre samples used in Portugal from the 19th to the 20th century, including powder and oil painting samples. The powder ochre samples came from several commercial distributors and from the collection of Joaquim Rodrigo (1912-1997), a leading Portuguese artist, particularly active during the sixties and seventies. The micro-samples of oil painting tubes came from the Museu Nacional de Arte Contemporânea-Museu do Chiado (National Museum of Contemporary Art-Chiado Museum) in Lisbon and were used by Columbano Bordalo Pinheiro (1857-1929), one of the most prominent naturalist Portuguese painters. These tubes were produced by the main 19th century colourmen: Winsor & Newton, Morin et Janet, Maison Merlin, and Lefranc. The samples have been studied using μ-Fourier Transform Infrared Spectroscopy (μ-FTIR), Raman microscopy, μ-Energy Dispersive X-ray fluorescence (μ-EDXRF), and X-ray diffraction (XRD). The analyzed ochres were found to be a mixture of several components: iron oxides and hydroxides in matrixes with kaolinite, gypsum and chalk. The results obtained allowed to identify and characterize the ochres according to their matrix and chromophores. The main chromophores where identified by Raman microscopy as being hematite, goethite and magnetite. The infrared analysis of the ochre samples allowed to divide them into groups, according to the composition of the matrix. It was possible to separate ochres containing kaolinite matrix and/or sulfate matrix from ochres where only iron oxides and/or hydroxides were detected. μ-EDXRF and Raman were the best techniques to identify umber, since the presence of elements such as manganese is characteristic of these pigments. μ-EDXRF also revealed the presence of significant amounts of arsenic in all Sienna tube paints.

  19. Direct observation of the coherent nuclear response after the absorption of a photon

    CERN Document Server

    Liebel, Matz; Bassolino, Giovanni; Taylor, Garrick; Watts, Anthony; Kukura, Philipp

    2014-01-01

    How molecules convert light energy to perform a specific transformation is a fundamental question in photophysics. Ultrafast spectroscopy reveals the kinetics associated with electronic energy flow, but little is known about how absorbed photon energy drives nuclear or electronic motion. Here, we used ultrabroadband transient absorption spectroscopy to monitor coherent vibrational energy flow after photoexcitation of the retinal chromophore. In the proton pump bacteriorhodopsin we observed coherent activation of hydrogen wagging and backbone torsional modes that were replaced by unreactive coordinates in the solution environment, concomitant with a deactivation of the reactive relaxation pathway.

  20. Estimation of the CO2 Concentration From the Measurements of Solar Absorption Spectra at an Altitude of 800 Meters by Using the FTS (GOSAT-BBM) in SWIR Region

    Science.gov (United States)

    Yoshida, Y.; Oguma, H.; Morino, I.; Suto, H.; Yokota, T.; Inoue, G.; Kuze, A.

    2006-12-01

    The Greenhouse gases Observing SATellite (GOSAT) is scheduled to be launched in 2008 to observe tropospheric CO2 and CH4 from space. We developed a retrieval algorithm, which simultaneously estimates the CO2 column concentration and the surface albedo from a spectrum of surface scattered solar radiation at 1.6 μm region measured by Fourier Transform Spectrometer (FTS) with some assumptions on the aerosol parameters. To validate and to improve the retrieval algorithm, a field experiment was conducted from 10:30 to 14:30 JST of November 17, 2005 using a bread board model (BBM) of the FTS. The surface scattered and the direct transmitted solar spectra were measured by BBM, which was installed at the terminal station of the ropeway near the summit of Mt. Tsukuba (an altitude of about 800 m). In-situ CO2 concentration was measured continuously at the surface target point and near the BBM. There seemed to exist visible aerosols within the atmospheric boundary layer; however, no measurements of aerosol parameters were made. We have tried to retrieve the CO2 concentrations with the assumptions of no aerosol and the boundary layer aerosol, respectively. Although the absolute values of the retrieved CO2 concentrations are different between these two analyses, the relative patterns of temporal variation of the retrieved column concentrations are similar. Also, there existed the lag correlation between the retrieved CO2 column concentration and the in-situ observed CO2 concentration at the surface target point. This suggests that our algorithm can at least detect the variation of the CO2 concentration. To retrieve more accurate absolute concentration of CO2, effects of aerosol should be considered properly.

  1. Variability of calcium absorption

    International Nuclear Information System (INIS)

    Variability in calcium absorption was estimated in three groups of normal subjects in whom Ca absorption was measured by standard isotopic-tracer methods at interstudy intervals ranging from 1 to 4 mo. Fifty absorption tests were performed in 22 subjects. Each was done in the morning after an overnight fast with an identical standard breakfast containing a Ca load of approximately 250 mg. Individual fractional absorption values were normalized to permit pooling of the data. The coefficient of variation (CVs) for absorption for the three groups ranged from 10.57 to 12.79% with the size of the CV increasing with interstudy duration. One other published study presenting replicate absorption values was analyzed in a similar fashion and was found to have a CV of absorption of 9.78%. From these data we estimate that when the standard double-isotope method is used to measure Ca absorption there is approximately 10% variability around any given absorption value within an individual human subject and that roughly two-thirds of this represents real biological variability in absorption

  2. Differential absorption optical coherence tomography with strong absorption contrast agents of gold nanorods

    Institute of Scientific and Technical Information of China (English)

    Ming WEI; Jun QIAN; Qiuqiang ZHAN; Fuhong CAI; Arash GHARIBI; Sailing HE

    2009-01-01

    Plasmon-resonant gold nanorods (GNRs) are demonstrated as strong absorption contrast agents for optical coherence tomography (OCT). OCT imaging of tissue phantoms doped with GNRs of different resonant wavelengths and concentrations is studied. To utilize the high absorption property of GNRs, a differential absorp-tion OCT imaging is introduced to retrieve the absorption information of GNRs from conventional backscattered signals. It is shown that the contrast of the OCT image can be enhanced significantly when the plasmon resonant wavelength of the GNRs matches the central wavelength of the OCT source.

  3. Novel absorption detection techniques for capillary electrophoresis

    Energy Technology Data Exchange (ETDEWEB)

    Xue, Y.

    1994-07-27

    Capillary electrophoresis (CE) has emerged as one of the most versatile separation methods. However, efficient separation is not sufficient unless coupled to adequate detection. The narrow inner diameter (I.D.) of the capillary column raises a big challenge to detection methods. For UV-vis absorption detection, the concentration sensitivity is only at the {mu}M level. Most commercial CE instruments are equipped with incoherent UV-vis lamps. Low-brightness, instability and inefficient coupling of the light source with the capillary limit the further improvement of UV-vis absorption detection in CE. The goals of this research have been to show the utility of laser-based absorption detection. The approaches involve: on-column double-beam laser absorption detection and its application to the detection of small ions and proteins, and absorption detection with the bubble-shaped flow cell.

  4. Nonlinear absorption of radiation in a liquid medium with nanoparticles

    International Nuclear Information System (INIS)

    The thermal diffusion mechanism of nonlinear absorption of light in a liquid medium with nanoparticles has been investigated. A self-similar solution describing the dynamics of the concentration of nanoparticles has been obtained in the low-concentration approximation

  5. Gas treating absorption theory and practice

    CERN Document Server

    Eimer, Dag

    2014-01-01

    Gas Treating: Absorption Theory and Practice provides an introduction to the treatment of natural gas, synthesis gas and flue gas, addressing why it is necessary and the challenges involved.  The book concentrates in particular on the absorption-desorption process and mass transfer coupled with chemical reaction. Following a general introduction to gas treatment, the chemistry of CO2, H2S and amine systems is described, and selected topics from physical chemistry with relevance to gas treating are presented. Thereafter the absorption process is discussed in detail, column hardware is explain

  6. Solar concentrator/absorber

    Science.gov (United States)

    Von Tiesenhausen, G. F.

    1976-01-01

    Collector/energy converter, consisting of dual-slope optical concentrator and counterflow thermal energy absorber, is attached to multiaxis support structure. Efficient over wide range of illumination levels, device may be used to generate high temperature steam, serve as solar powered dryer, or power absorption cycle cooler.

  7. Size-resolved measurements of brown carbon in water and methanol extracts and estimates of their contribution to ambient fine-particle light absorption

    Science.gov (United States)

    Liu, J.; Bergin, M.; Guo, H.; King, L.; Kotra, N.; Edgerton, E.; Weber, R. J.

    2013-12-01

    Light absorbing organic carbon, often called brown carbon, has the potential to significantly contribute to the visible light-absorption budget, particularly at shorter wavelengths. Currently, the relative contributions of particulate brown carbon to light absorption, as well as the sources of brown carbon, are poorly understood. With this in mind size-resolved direct measurements of brown carbon were made at both urban (Atlanta), and rural (Yorkville) sites in Georgia. Measurements in Atlanta were made at both a representative urban site and a road-side site adjacent to a main highway. Fine particle absorption was measured with a multi-angle absorption photometer (MAAP) and seven-wavelength Aethalometer, and brown carbon absorption was estimated based on Mie calculations using direct size-resolved measurements of chromophores in solvents. Size-resolved samples were collected using a cascade impactor and analyzed for water-soluble organic carbon (WSOC), organic and elemental carbon (OC and EC), and solution light-absorption spectra of water and methanol extracts. Methanol extracts were more light-absorbing than water extracts for all size ranges and wavelengths. Absorption refractive indices of the organic extracts were calculated from solution measurements for a range of wavelengths and used with Mie theory to predict the light absorption by fine particles comprised of these components, under the assumption that brown carbon and other aerosol components were externally mixed. For all three sites, chromophores were predominately in the accumulation mode with an aerodynamic mean diameter of 0.5 μm, an optically effective size range resulting in predicted particle light absorption being a factor of 2 higher than bulk solution absorption. Mie-predicted brown carbon absorption at 350 nm contributed a significant fraction (20 to 40%) relative to total light absorption, with the highest contributions at the rural site where organic to elemental carbon ratios were

  8. Nutrition and magnesium absorption.

    NARCIS (Netherlands)

    Brink, E.J.

    1992-01-01

    The influence of various nutrients present in dairy products and soybean-based products on absorption of magnesium has been investigated. The studies demonstrate that soybean protein versus casein lowers apparent magnesium absorption in rats through its phytate component. However, true magnesium abs

  9. In vivo characterization of NcsB3 to establish the complete biosynthesis of the naphthoic acid moiety of the neocarzinostatin chromophore.

    Science.gov (United States)

    Hang, Vu Thi Thu; Oh, Tae Jin; Yamaguchi, Tokutaro; Sohng, Jae Kyung

    2010-10-01

    Neocarzinostatin (NCS) is an enediyne antibiotic produced by Streptomyces carzinostaticus. The NCS chromophore consists of an enediyne core, a sugar moiety, and a naphthoic acid (NA) moiety. The latter plays a key role in binding the NCS chromophore to its apoprotein to protect and stabilize the bioactive NCS chromophore. In this study, we expressed three genes: ncsB (naphthoic acid synthase), ncsB3 (P450 hydroxylase), and ncsB1 (O-methyltransferase), in Streptomyces lividans TK24. The three genes were sufficient to produce 2-hydroxy-7-methoxy-5-methyl-1-naphthoic acid. Production was analyzed and confirmed by LC-MS and nuclear magnetic resonance. Here, we report the functional characterization of ncsB3 and thereby elucidate the complete biosynthetic pathway of NA moiety of the NCS chromophore. PMID:20735485

  10. Design, synthesis, and characterization of a novel class of tunable chromophores for second- and third-order NLO applications

    Science.gov (United States)

    Attias, Andre-Jean; Leclerc, Nicolas; Chen, Qiying; Sargent, Edward H.; Schull, Guillaume; Charra, Fabrice

    2004-10-01

    We describe a general approach for the synthesis of 6,6'-(disubstituted)-3,3'-bipyridine based chromophores. This combinatorial type strategy is based on (i) the synthesis of a library of conjugated building blocks end-capped with electron donor or acceptor groups, and (ii) their homo- or cross-coupling. The compounds are either dipolar (push-pull molecules) or apolar (symmetric D-A-A-D) molecules. Depending on the building blocks, we are able to tune both the structural and NLO properties of the chromophores. For example, the D-A-A-D structure possesses ultrafast nonresonant nonlinearity around 1550 nm with excellent figures of merit, as well as TPA in the visible and NIR ranges.

  11. Synthesis of a novel organic nonlinear optical chromophore and the Testing for μgβ Value

    Institute of Scientific and Technical Information of China (English)

    HAN Li-kun; JIANG Ya-dong; LI Wei; CAI Yuan

    2007-01-01

    A novel second-order nonlinear optical chromophore (DCDHF-2-V) was synthesized from 3-Hydroxy-3-methyl-2-butanae,propanedinitrile and 4-diethylaminobenzaldehyde by aldol condensation reaction. Molecular structural characterization was investigated by elemental analysis,FTIR,and 1H-NMR spectra. The melting point obtained from DSC thermogram was almost 251 ℃,and the compound shows a thermal stability up to 270 ℃. Second-order NLO properties of the chromophore were measured by solvatochromic method. From the quantum-mechanical two-level model,it can be obtained that the μgβ value of DCDHF-2-V is 6520 × 10-48 esu atthe wavelength of 1064 nm.

  12. Synthesis and Nonlinear Optical Property of a Series of New Chromophores Containing Furan Ring as the Only Conjugation Bridge

    Institute of Scientific and Technical Information of China (English)

    2002-01-01

    This paper reports the synthesis and the nonlinear optical property of a series of new chromophores which contain furan ring as the only conjugation bridge for the first time. They are characterized by UV-VIS, FT-IR, 1H NMR, MS and elemental analysis. Their dipole moment and the first-order molecular hyperpolarizability (β) are calculated and compared with those of the analogues containing either benzene or thiophene as the conjugation bridge.

  13. Kinetic isotope effect studies on the de novo rate of chromophore formation in fast- and slow-maturing GFP variants†

    OpenAIRE

    Pouwels, Lauren J.; Zhang, Liping; Chan, Nam H.; Dorrestein, Pieter C.; Wachter, Rebekka M.

    2008-01-01

    The maturation process of green fluorescent protein (GFP) entails a protein oxidation reaction triggered by spontaneous backbone condensation. The chromophore is generated by full conjugation of the Tyr66 phenolic group with the heterocycle, a process that requires C-H bond scission at the benzylic carbon. We have prepared isotope-enriched protein bearing tyrosine residues deuterated at the beta carbon, and have determined kinetic isotope effects (KIEs) on the GFP self-processing reaction. Pr...

  14. Improved light delivery for chromophore-enhanced laser-induced hyperthermia in a murine breast cancer model

    Science.gov (United States)

    Lucroy, Michael D.; Chen, Wei R.; Sensney-Sears, Diane; Higbee, Russell G.; Bartels, Kenneth E.

    2001-05-01

    The effects of heat on malignant tumors are well known. Laser-induced hyperthermia is an alternative to microwave or radio wave tissue heating for cancer treatment. In situ injection of a chromophore that converts light into heat allows selective tissue heating. Our attempts to reproduce published results, using the chromophore ICG to enhance tissue heating, produced unacceptable skin damage. This was likely a function of light delivery methods or ICG diffusion into the skin from the tumor. We therefore set about to investigate the effects of ICG on normal and tumor tissue heating, and to develop methods of light delivery and skin cooling to minimize damage to normal tissues. ICG significantly increased tissue heating during 810 nm laser irradiation. Both argon gas and argon gas with water mist cooled the skin; only the addition of water mist maintained normal skin temperatures during laser treatments. In situ injection of ICG, combined with active cooling of the skin produced selective heating of the tumor. Laser light delivery through a microlens produced lower energy densities in the skin while sufficiently heating ICG-containing tumors. Selective laser-induced hyperthermia may become a useful cancer therapy with refinements in laser energy delivery, chromophore localization, and active cooling methods.

  15. Probing microhydration effect on the electronic structure of the GFP chromophore anion: Photoelectron spectroscopy and theoretical investigations

    Energy Technology Data Exchange (ETDEWEB)

    Bhaskaran-Nair, Kiran; Shelton, William A. [Cain Department of Chemical Engineering, Louisiana State University, Baton Rouge, Louisiana 70803 (United States); Center for Computation and Technology, Louisiana State University, Baton Rouge, Louisiana 70803 (United States); Valiev, Marat; Kowalski, Karol, E-mail: karol.kowalski@pnnl.gov [William R. Wiley Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, K8-91, P.O. Box 999, Richland, Washington 99352 (United States); Deng, S. H. M.; Wang, Xue-Bin, E-mail: xuebin.wang@pnnl.gov [Physical Sciences Division, Pacific Northwest National Laboratory, K8-88, P.O. Box 999, Richland, Washington 99352 (United States)

    2015-12-14

    The photophysics of the Green Fluorescent Protein (GFP) chromophore is critically dependent on its local structure and on its environment. Despite extensive experimental and computational studies, there remain many open questions regarding the key fundamental variables that govern this process. One outstanding problem is the role of autoionization as a possible relaxation pathway of the excited state under different environmental conditions. This issue is considered in our work through combined experimental and theoretical studies of microsolvated clusters of the deprotonated p-hydroxybenzylidene-2,3-dimethylimidazolinone anion (HBDI{sup −}), an analog of the GFP chromophore. Through selective generation of microsolvated structures of predetermined size and subsequent analysis of experimental photoelectron spectra by high level ab initio methods, we are able to precisely identify the structure of the system, establish the accuracy of theoretical data, and provide reliable description of auto-ionization process as a function of hydrogen-bonding environment. Our study clearly illustrates the first few water molecules progressively stabilize the excited state of the chromophore anion against the autodetached neutral state, which should be an important trait for crystallographic water molecules in GFPs that has not been fully explored to date.

  16. Probing microhydration effect on the electronic structure of the GFP chromophore anion. Photoelectron spectroscopy and theoretical investigations

    Energy Technology Data Exchange (ETDEWEB)

    Bhaskaran-Nair, Kiran [Louisiana State Univ., Baton Rouge, LA (United States); Valiev, Marat [Pacific Northwest National Lab. (PNNL), Richland, WA (United States). Atmospheric Science and Global Change Div. (ASGC); Deng, Shihu [Pacific Northwest National Lab. (PNNL), Richland, WA (United States); Shelton, William A. [Louisiana State Univ., Baton Rouge, LA (United States); Kowalski, Karol [Pacific Northwest National Lab. (PNNL), Richland, WA (United States). Atmospheric Science and Global Change Div. (ASGC); Wang, Xue B. [Pacific Northwest National Lab. (PNNL), Richland, WA (United States)

    2015-12-14

    The photophysics of Green Fluorescent Protein (GFP) chromophore is critically dependent on its local structure and on its environment. Despite extensive experimental and computational studies, there remain many open questions regarding the key fundamental variables that govern this process. One outstanding problem is the role of autoionization as a possible relaxation pathway of the excited state under different environmental conditions. This issue is considered in our work through combined experimental and theoretical studies of microsolvated clusters of the deprotonated p-hydroxybenzylidene-2,3-dimethylimidazolinone anion (HBDI⁻), an analog of GFP chromophore. Through selective generation of microsolvated structures of predetermined size and subsequent analysis of experimental photoelectron spectra by high level ab-initio methods we are able to precisely identify the structure of the system, establish the accuracy of theoretical data, and provide reliable description of auto-ionization process as a function of hydrogen-bonding environment. Our study clearly illustrates the first few water molecules progressively stabilize the excited state of the chromophore anion against the autodetached neutral state, which should be an important trait for crystallographic water molecules in GFPs that has not been fully explored to date.

  17. Probing microhydration effect on the electronic structure of the GFP chromophore anion: Photoelectron spectroscopy and theoretical investigations

    Science.gov (United States)

    Bhaskaran-Nair, Kiran; Valiev, Marat; Deng, S. H. M.; Shelton, William A.; Kowalski, Karol; Wang, Xue-Bin

    2015-12-01

    The photophysics of the Green Fluorescent Protein (GFP) chromophore is critically dependent on its local structure and on its environment. Despite extensive experimental and computational studies, there remain many open questions regarding the key fundamental variables that govern this process. One outstanding problem is the role of autoionization as a possible relaxation pathway of the excited state under different environmental conditions. This issue is considered in our work through combined experimental and theoretical studies of microsolvated clusters of the deprotonated p-hydroxybenzylidene-2,3-dimethylimidazolinone anion (HBDI-), an analog of the GFP chromophore. Through selective generation of microsolvated structures of predetermined size and subsequent analysis of experimental photoelectron spectra by high level ab initio methods, we are able to precisely identify the structure of the system, establish the accuracy of theoretical data, and provide reliable description of auto-ionization process as a function of hydrogen-bonding environment. Our study clearly illustrates the first few water molecules progressively stabilize the excited state of the chromophore anion against the autodetached neutral state, which should be an important trait for crystallographic water molecules in GFPs that has not been fully explored to date.

  18. Old chromophores, new photoactivation paradigms, trendy applications: flavins in blue light-sensing photoreceptors.

    Science.gov (United States)

    Losi, Aba; Gärtner, Wolfgang

    2011-01-01

    The knowledge on the mechanisms by which blue light (BL) is sensed by diverse and numerous organisms, and of the physiological responses elicited by the BL photoreceptors, has grown remarkably during the last two decades. The basis for this "blue revival" was set by the identification and molecular characterization of long sought plant BL sensors, employing flavins as chromophores, chiefly cryptochromes and phototropins. The latter photosensors are the foundation members of the so-called light, oxygen, voltage (LOV)-protein family, largely spread among archaea, bacteria, fungi and plants. The accumulation of sequenced microbial genomes during the last years has added the BLUF (Blue Light sensing Using FAD) family to the BL photoreceptors and yielded the opportunity for intense "genome mining," which has presented to us the intriguing wealth of BL sensing in prokaryotes. In this contribution we provide an update of flavin-based BL sensors of the LOV and BLUF type, from prokaryotic microorganisms, with special emphasis to their light-activation pathways and molecular signal-transduction mechanisms. Rather than being a fully comprehensive review, this research collects the most recent discoveries and aims to unveil and compare signaling pathways and mechanisms of BL sensors. PMID:21352235

  19. Crystallographic Structure of Xanthorhodopsin, the Light-Driven Proton Pump With a Dual Chromophore

    Energy Technology Data Exchange (ETDEWEB)

    Luecke, H.; Schobert, B.; Stagno, J.; Imasheva, E.S.; Wang, J.M.; Balashov, S.P.; Lanyi, J.K.

    2009-05-19

    Homologous to bacteriorhodopsin and even more to proteorhodopsin, xanthorhodopsin is a light-driven proton pump that, in addition to retinal, contains a noncovalently bound carotenoid with a function of a light-harvesting antenna. We determined the structure of this eubacterial membrane protein-carotenoid complex by X-ray diffraction, to 1.9-{angstrom} resolution. Although it contains 7 transmembrane helices like bacteriorhodopsin and archaerhodopsin, the structure of xanthorhodopsin is considerably different from the 2 archaeal proteins. The crystallographic model for this rhodopsin introduces structural motifs for proton transfer during the reaction cycle, particularly for proton release, that are dramatically different from those in other retinal-based transmembrane pumps. Further, it contains a histidine-aspartate complex for regulating the pK{sub a} of the primary proton acceptor not present in archaeal pumps but apparently conserved in eubacterial pumps. In addition to aiding elucidation of a more general proton transfer mechanism for light-driven energy transducers, the structure defines also the geometry of the carotenoid and the retinal. The close approach of the 2 polyenes at their ring ends explains why the efficiency of the excited-state energy transfer is as high as {approx}45%, and the 46{sup o} angle between them suggests that the chromophore location is a compromise between optimal capture of light of all polarization angles and excited-state energy transfer.

  20. Fluorescent sensors for selective detection of thiols: expanding the intramolecular displacement based mechanism to new chromophores.

    Science.gov (United States)

    Niu, Li-Ya; Zheng, Hai-Rong; Chen, Yu-Zhe; Wu, Li-Zhu; Tung, Chen-Ho; Yang, Qing-Zheng

    2014-03-21

    Biological thiols, including cysteine (Cys), homocystein (Hcy) and glutathione (GSH), play crucial roles in maintaining the appropriate redox status of biological systems. An abnormal level of biothiols is associated with different diseases, therefore, the discrimination between them is of great importance. Herein, we present two fluorescent sensors for selective detection of biothiols based on our recently reported intramolecular displacement mechanism. We expanded this mechanism to commercially available chromophores, 4-chloro-7-nitro-2,1,3-benzoxadiazole (NBD-Cl) and heptamethine cyanine dye IR-780. The sensors operate by undergoing displacement of chloride by thiolate. The amino groups of Cys/Hcy further replace the thiolate to form amino-substituted products, which exhibit dramatically different photophysical properties compared to sulfur-substituted products from the reaction with GSH. NBD-Cl is highly selective towards Cys/Hcy and exhibits significant fluorescence enhancement. IR-780 showed a variation in its fluorescence ratio towards Cys over other thiols. Both of the sensors can be used for live-cell imaging of Cys. The wide applicability of the mechanism may provide a powerful tool for developing novel fluorescent sensors for selective detection of biothiols. PMID:24466567

  1. Chromophore-Assisted Light Inactivation of Mitochondrial Electron Transport Chain Complex II in Caenorhabditis elegans

    Science.gov (United States)

    Wojtovich, Andrew P.; Wei, Alicia Y.; Sherman, Teresa A.; Foster, Thomas H.; Nehrke, Keith

    2016-01-01

    Mitochondria play critical roles in meeting cellular energy demand, in cell death, and in reactive oxygen species (ROS) and stress signaling. Most Caenorhabditis elegans loss-of-function (lf) mutants in nuclear-encoded components of the respiratory chain are non-viable, emphasizing the importance of respiratory function. Chromophore-Assisted Light Inactivation (CALI) using genetically-encoded photosensitizers provides an opportunity to determine how individual respiratory chain components contribute to physiology following acute lf. As proof-of-concept, we expressed the ‘singlet oxygen generator’ miniSOG as a fusion with the SDHC subunit of respiratory complex II, encoded by mev-1 in C. elegans, using Mos1-mediated Single Copy Insertion. The resulting mev-1::miniSOG transgene complemented mev-1 mutant phenotypes in kn1 missense and tm1081(lf) deletion mutants. Complex II activity was inactivated by blue light in mitochondria from strains expressing active miniSOG fusions, but not those from inactive fusions. Moreover, light-inducible phenotypes in vivo demonstrated that complex II activity is important under conditions of high energy demand, and that specific cell types are uniquely susceptible to loss of complex II. In conclusion, miniSOG-mediated CALI is a novel genetic platform for acute inactivation of respiratory chain components. Spatio-temporally controlled ROS generation will expand our understanding of how the respiratory chain and mitochondrial ROS influence whole organism physiology. PMID:27440050

  2. Preorganized Chromophores Facilitate Triplet Energy Migration, Annihilation and Upconverted Singlet Energy Collection.

    Science.gov (United States)

    Mahato, Prasenjit; Yanai, Nobuhiro; Sindoro, Melinda; Granick, Steve; Kimizuka, Nobuo

    2016-05-25

    Photon upconversion (UC) based on triplet-triplet annihilation (TTA) has the potential to enhance significantly photovoltaic and photocatalytic efficiencies by harnessing sub-bandgap photons, but the progress of this field is held back by the chemistry problem of how to preorganize multiple chromophores for efficient UC under weak solar irradiance. Recently, the first maximization of UC quantum yield at solar irradiance was achieved using fast triplet energy migration (TEM) in metal-organic frameworks (MOFs) with ordered acceptor arrays, but at the same time, a trade-off between fast TEM and high fluorescence efficiency was also found. Here, we provide a solution for this trade-off issue by developing a new strategy, triplet energy migration, annihilation and upconverted singlet energy collection (TEM-UPCON). The porous structure of acceptor-based MOF crystals allows triplet donor molecules to be accommodated without aggregation. The surface of donor-doped MOF nanocrystals is modified with highly fluorescent energy collectors through coordination bond formation. Thanks to the higher fluorescence quantum yield of surface-bound collectors than parent MOFs, the implementation of the energy collector greatly improves the total UC quantum yield. The UC quantum yield maximization behavior at ultralow excitation intensity was retained because the TTA events take place only in the MOF acceptors. The TEM-UPCON concept may be generalized to collectors with various functions and would lead to quantitative harvesting of upconverted energy, which is difficult to achieve in common molecular diffusion-based systems.

  3. SuperNova, a monomeric photosensitizing fluorescent protein for chromophore-assisted light inactivation.

    Science.gov (United States)

    Takemoto, Kiwamu; Matsuda, Tomoki; Sakai, Naoki; Fu, Donald; Noda, Masanori; Uchiyama, Susumu; Kotera, Ippei; Arai, Yoshiyuki; Horiuchi, Masataka; Fukui, Kiichi; Ayabe, Tokiyoshi; Inagaki, Fuyuhiko; Suzuki, Hiroshi; Nagai, Takeharu

    2013-01-01

    Chromophore-assisted light inactivation (CALI) is a powerful technique for acute perturbation of biomolecules in a spatio-temporally defined manner in living specimen with reactive oxygen species (ROS). Whereas a chemical photosensitizer including fluorescein must be added to specimens exogenously and cannot be restricted to particular cells or sub-cellular compartments, a genetically-encoded photosensitizer, KillerRed, can be controlled in its expression by tissue specific promoters or subcellular localization tags. Despite of this superiority, KillerRed hasn't yet become a versatile tool because its dimerization tendency prevents fusion with proteins of interest. Here, we report the development of monomeric variant of KillerRed (SuperNova) by direct evolution using random mutagenesis. In contrast to KillerRed, SuperNova in fusion with target proteins shows proper localization. Furthermore, unlike KillerRed, SuperNova expression alone doesn't perturb mitotic cell division. Supernova retains the ability to generate ROS, and hence promote CALI-based functional analysis of target proteins overcoming the major drawbacks of KillerRed. PMID:24043132

  4. Highly Fluorescent Green Fluorescent Protein Chromophore Analogues Made by Decorating the Imidazolone Ring.

    Science.gov (United States)

    Gutiérrez, Sara; Martínez-López, David; Morón, María; Sucunza, David; Sampedro, Diego; Domingo, Alberto; Salgado, Antonio; Vaquero, Juan J

    2015-12-14

    The synthesis and photophysical behavior of an unexplored family of green fluorescent protein (GFP)-like chromophore analogues is reported. The compound (Z)-4-(4-hydroxybenzylidene)-1-propyl-2-(propylamino)-1H-imidazol-5(4 H)-one (p-HBDNI, 2 a) exhibits significantly enhanced fluorescence properties relative to the parent compound (Z)-5-(4-hydroxybenzylidene)-2,3-dimethyl-3,5-dihydro-4H-imidazol-4-one (p-HBDI, 1). p-HBDNI was considered as a model system and the photophysical properties of other novel 2-amino-3,5-dihydro-4H-imidazol-4-one derivatives were evaluated. Time-dependent DFT calculations were carried out to rationalize the results. The analogue AIDNI (2 c), in which the 4-hydroxybenzyl group of p-HBDNI was replaced by an azaindole group, showed improved photophysical properties and potential for cell staining. The uptake and intracellular distribution of 2 c in living cells was investigated by confocal microscopy imaging.

  5. Chromophore-Assisted Light Inactivation of Mitochondrial Electron Transport Chain Complex II in Caenorhabditis elegans.

    Science.gov (United States)

    Wojtovich, Andrew P; Wei, Alicia Y; Sherman, Teresa A; Foster, Thomas H; Nehrke, Keith

    2016-01-01

    Mitochondria play critical roles in meeting cellular energy demand, in cell death, and in reactive oxygen species (ROS) and stress signaling. Most Caenorhabditis elegans loss-of-function (lf) mutants in nuclear-encoded components of the respiratory chain are non-viable, emphasizing the importance of respiratory function. Chromophore-Assisted Light Inactivation (CALI) using genetically-encoded photosensitizers provides an opportunity to determine how individual respiratory chain components contribute to physiology following acute lf. As proof-of-concept, we expressed the 'singlet oxygen generator' miniSOG as a fusion with the SDHC subunit of respiratory complex II, encoded by mev-1 in C. elegans, using Mos1-mediated Single Copy Insertion. The resulting mev-1::miniSOG transgene complemented mev-1 mutant phenotypes in kn1 missense and tm1081(lf) deletion mutants. Complex II activity was inactivated by blue light in mitochondria from strains expressing active miniSOG fusions, but not those from inactive fusions. Moreover, light-inducible phenotypes in vivo demonstrated that complex II activity is important under conditions of high energy demand, and that specific cell types are uniquely susceptible to loss of complex II. In conclusion, miniSOG-mediated CALI is a novel genetic platform for acute inactivation of respiratory chain components. Spatio-temporally controlled ROS generation will expand our understanding of how the respiratory chain and mitochondrial ROS influence whole organism physiology. PMID:27440050

  6. Dual Fluorescence in GFP Chromophore Analogues: Chemical Modulation of Charge Transfer and Proton Transfer Bands.

    Science.gov (United States)

    Chatterjee, Tanmay; Mandal, Mrinal; Das, Ananya; Bhattacharyya, Kalishankar; Datta, Ayan; Mandal, Prasun K

    2016-04-14

    Dual fluorescence of GFP chromophore analogues has been observed for the first time. OHIM (o-hydroxy imidazolidinone) shows only a charge transfer (CT) band, CHBDI (p-cyclicamino o-hydroxy benzimidazolidinone) shows a comparable intensity CT and PT (proton transfer) band, and MHBDI (p-methoxy o-hydroxy benzimidazolidinone) shows a higher intensity PT band. It could be shown that the differential optical behavior is not due to conformational variation in the solid or solution phase. Rather, control of the excited state electronic energy level and excited state acidity constant by functional group modification could be shown to be responsible for the differential optical behavior. Chemical modification-induced electronic control over the relative intensity of the charge transfer and proton transfer bands could thus be evidenced. Support from single-crystal X-ray structure, NMR, femtosecond to nanosecond fluorescence decay analysis, and TDDFT-based calculation provided important information and thus helped us understand the photophysics better. PMID:26998908

  7. New Homogeneous Chromophore/Catalyst Concepts for the Solar-Driven Reduction of Carbon Dioxide

    Energy Technology Data Exchange (ETDEWEB)

    Hopkins, Michael D. [The University of Chicago, Chicago, IL (United States)

    2015-06-22

    One of the major scientific and technical challenges of this century is to develop chemical means to store solar energy in the form of fuels. This can be accomplished by developing light-absorbing and catalytic compounds that function cooperatively to rearrange the chemical bonds of feedstocks in a way that allows solar energy to be stored and released on demand. The research conducted during this project was directed toward addressing fundamental questions that underlie the conversion of CO2 to a solar fuel using homogeneous molecular systems. The research focused particularly on developing methods for extracting the reducing equivalents for these photochemical conversions from H2, which is a renewable molecule sourced to water. The research followed two main lines. One effort focused on understanding the general principles that govern how light-absorbing molecules interact with independent H2 oxidation and CO2 reduction catalysts to produce a functional cycle for driving the energy-storing reverse water-gas-shift reaction with light. The second effort centered on developing the excited-state properties and H2 activation chemistry of tungsten–alkylidyne complexes. These chromophores were found to be powerful excited-state reducing agents, which could be incorporated into light-light-harvesting assemblies, and to hold the potential to be regenerated using H2.

  8. Chromophore-immobilized luminescent metal-organic frameworks as potential lighting phosphors and chemical sensors.

    Science.gov (United States)

    Wang, Fangming; Liu, Wei; Teat, Simon J; Xu, Feng; Wang, Hao; Wang, Xinlong; An, Litao; Li, Jing

    2016-08-11

    An organic chromophore H4tcbpe-F was synthesized and immobilized into metal-organic frameworks along with two bipyridine derivatives as co-ligands to generate two strongly luminescent materials [Zn2(tcbpe-F)(4,4'-bpy)·xDMA] (1) and [Zn2(tcbpe-F)(bpee)·xDMA] (2) [4,4'-bpy = 4,4'-bipyridine, bpee = 4,4'-bipyridyl-ethylene, tcbpe-F = 4',4''',4''''',4'''''''-(ethene-1,1,2,2-tetrayl)tetrakis(3-fluoro-[1,1'-biphenyl]-4-carboxylic acid), DMA = N,N-dimethylacetamide]. Compounds 1 and 2 are isoreticular and feature a 2-fold interpenetrated three-dimensional porous structure. Both compounds give green-yellow emission under blue light excitation. Compound 1 has a high internal quantum yield of ∼51% when excited at 455 nm and shows selective luminescence signal change (e.g. emission energy and/or intensity) towards different solvents, including both aromatic and nonaromatic volatile organic species. These properties make it potentially useful as a lighting phosphor and a chemical sensor. PMID:27465685

  9. Photocatalytic degradation of different chromophoric dyes in aqueous phase using La and Mo doped TiO{sub 2} hybrid carbon spheres

    Energy Technology Data Exchange (ETDEWEB)

    Raza, Waseem; Haque, M.M. [Department of Chemistry, Aligarh Muslim University, Aligarh 202002 (India); Muneer, M., E-mail: m.muneer.ch@amu.ac.in [Department of Chemistry, Aligarh Muslim University, Aligarh 202002 (India); Fleisch, M.; Hakki, A.; Bahnemann, D. [Institut fuer Technische Chemie, Leibniz Universität Hannover, Callinstrasse 3, D-30167 Hannover (Germany)

    2015-05-25

    Highlights: • La and Mo doped TiO{sub 2} hybrid carbon spheres have been synthesized using hydrothermal method. • The characterization of La and Mo doped TiO{sub 2} hybrid carbon spheres uniform morphology having anatase phase and good structural stability. • TiO{sub 2} hybrid carbon spheres with dopant concentration of 2.0% (La) and 1.5% (Mo) showed the highest photocatalytic activity as compared to the other dopant concentrations for the degradation of all the dyes under investigation. - Abstract: La and Mo-doped TiO{sub 2} coated carbon spheres have been synthesized using the hydrothermal method. The prepared materials were characterized by standard analytical techniques, X-ray diffraction (XRD), UV–Vis spectrophotometry, scanning electron microscopy (SEM), energy-dispersive X-ray spectroscopy (EDX) and Raman spectroscopy. The XRD and Raman spectroscopic analysis showed that the particles are in anatase phase. The EDX and SEM images showed that La/Mo-doped TiO{sub 2} are present on the surface of the carbon spheres. The photocatalytic activity of the synthesized particles were tested by studying the degradation of three different chromophoric dyes, i.e., Acid Yellow 29 (azo dye), Coomassie Brilliant Blue G250 (triphenylmethane dye) and Acid Green 25 (anthraquinone dye) as a function of time on irradiation in aqueous suspension. TiO{sub 2} particle with dopant concentration of 2.0% La and 1.5% Mo showed the highest photocatalytic activity as compared to the other dopant concentrations for the degradation of all the dyes under investigation.

  10. Lithium absorption by the rabbit gall-bladder

    DEFF Research Database (Denmark)

    Hansen, C P; Holstein-Rathlou, N H; Skøtt, O;

    1991-01-01

    Lithium (Li+) absorption across the low-resistance epithelium of the rabbit gall-bladder was studied in order to elucidate possible routes and mechanisms of Li+ transfer. Li+ at a concentration of 0.4 mM in both mucosal and serosal media did not affect isosmotic mucosa-to-serosa fluid absorption...... was elicited from the mucosal side and was not accounted for by compensatory Li+ absorption; water and Na+ absorption rates decreased nearly in parallel. The effects of 0.4 mM amiloride and of substitution with 20 mM Li+ were only partly additive. It is concluded that Li+ absorption in the rabbit gall...

  11. Mass concentration and ion composition of coarse and fine particles in an urban area in Beirut: effect of calcium carbonate on the absorption of nitric and sulfuric acids and the depletion of chloride

    Directory of Open Access Journals (Sweden)

    H. Kouyoumdjian

    2006-01-01

    Full Text Available Levels of coarse (PM10-2.5 and fine (PM2.5 particles were determined between February 2004 and January 2005 in the city of Beirut, Lebanon. While low PM mass concentrations were measured in the rainy season, elevated levels were detected during sand storms originating from Arabian desert and/or Africa. Using ATR-FTIR and IC, it was shown that nitrate, sulfate, carbonate and chloride were the main anionic constituents of the coarse particles, whereas sulfate was mostly predominant in the fine particles in the form of (NH42SO4. Ammonium nitrate was not expected to be important because the medium was defined as ammonium poor. In parallel, the cations Ca2+ and Na+ dominated in the coarse, and NH4+, Ca2+ and Na+ in the fine particles. Coarse nitrate and sulfate ions resulted from the respective reactions of nitric and sulfuric acid with a relatively high amount of calcium carbonate. Both CaCO3 and Ca(NO32 crystals identified by ATR-FTIR in the coarse particles were found to be resistant to soaking in water for 24 h but became water soluble when they were formed in the fine particles suggesting, thereby, different growth and adsorption phenomena. The seasonal variational study showed that nitrate and sulfate ion concentrations increased in the summer due to the enhancement of photochemical reactions which facilitated the conversion of NO2 and SO2 gases into NO3- and SO42-, respectively. While nitrate was mainly due to local heavy traffic, sulfates were due to local and long-range transport phenomena. Using the air mass trajectory HYSPLIT model, it was found that the increase in the sulfate concentration correlated with wind vectors coming from Eastern and Central Europe. Chloride levels, on the other hand, were high when wind originated from the sea and low during sand storms. In addition to sea salt, elevated levels of chloride were also attributed to waste mass burning in proximity to the site. In comparison to other neighboring Mediterranean

  12. Mass concentration and ion composition of coarse and fine particles in an urban area in Beirut: effect of calcium carbonate on the absorption of nitric and sulfuric acids and the depletion of chloride

    Science.gov (United States)

    Kouyoumdjian, H.; Saliba, N. A.

    2006-05-01

    Levels of coarse (PM10-2.5) and fine (PM2.5) particles were determined between February 2004 and January 2005 in the city of Beirut, Lebanon. While low PM mass concentrations were measured in the rainy season, elevated levels were detected during sand storms originating from Arabian desert and/or Africa. Using ATR-FTIR and IC, it was shown that nitrate, sulfate, carbonate and chloride were the main anionic constituents of the coarse particles, whereas sulfate was mostly predominant in the fine particles in the form of (NH4)2SO4. Ammonium nitrate was not expected to be important because the medium was defined as ammonium poor. In parallel, the cations Ca2+ and Na+ dominated in the coarse, and NH4+, Ca2+ and Na+ in the fine particles. Coarse nitrate and sulfate ions resulted from the respective reactions of nitric and sulfuric acid with a relatively high amount of calcium carbonate. Both CaCO3 and Ca(NO3)2 crystals identified by ATR-FTIR in the coarse particles were found to be resistant to soaking in water for 24 h but became water soluble when they were formed in the fine particles suggesting, thereby, different growth and adsorption phenomena. The seasonal variational study showed that nitrate and sulfate ion concentrations increased in the summer due to the enhancement of photochemical reactions which facilitated the conversion of NO2 and SO2 gases into NO3- and SO42-, respectively. While nitrate was mainly due to local heavy traffic, sulfates were due to local and long-range transport phenomena. Using the air mass trajectory HYSPLIT model, it was found that the increase in the sulfate concentration correlated with wind vectors coming from Eastern and Central Europe. Chloride levels, on the other hand, were high when wind originated from the sea and low during sand storms. In addition to sea salt, elevated levels of chloride were also attributed to waste mass burning in proximity to the site. In comparison to other neighboring Mediterranean countries, relatively

  13. Contrasting phytoplankton community structure and associated light absorption characteristics of the western Bay of Bengal

    Science.gov (United States)

    Pandi, Sudarsana Rao; Kiran, Rayaprolu; Sarma, Nittala S.; Srikanth, A. S.; Sarma, V. V. S. S.; Krishna, M. S.; Bandyopadhyay, D.; Prasad, V. R.; Acharyya, T.; Reddy, K. G.

    2014-01-01

    Absorption spectra, particulate pigments, and hydrochemical constituents were measured in the western Bay of Bengal (BoB) during July-August 2010 when influence of river discharge is at peak. Chromophoric dissolved organic matter (CDOM) absorption coefficient (aCDOM(440)) displayed a significant inverse linear relationship with salinity in the surface waters implying conservative mixing of marine and terrestrial end members. The northern part of the study area is influenced by discharge from the river Ganga and a dominant terrestrial CDOM signal is seen. The southern part receives discharge from peninsular rivers with corresponding signals of higher CDOM than the linear model would indicate and higher UV-specific absorption coefficient (SUVA) indicating more aged and humified DOM. Lower contribution of CDOM to total non-water absorption and higher phytoplankton biomass (chlorophyll a absorption coefficient, aph(440)) but lower chlorophyll a specific phytoplankton absorption coefficient (a{ph/*}(440)) characterize the northern part, compared to the southern part. Chlorophyll b had a distinct linear relationship with chlorophyll a in the latter. The size index (SI) indicated dominance of microphytoplankton in the northern and nano and picophytoplankton in the southern parts. Chlorophyll a is significantly related to a{ph/*}(440) by an inverse power model in the northern part but by an inverse linear model in the southern part. Our study suggests that knowledge of the phytoplankton community structure is essential to improve chlorophyll a algorithm in the coastal Bay of Bengal.

  14. Water dimer absorption of visible light

    Directory of Open Access Journals (Sweden)

    J. Hargrove

    2007-07-01

    Full Text Available Laboratory measurements of water vapor absorption using cavity ring-down spectroscopy revealed a broad absorption at 405 nm with a quadratic dependence on water monomer concentration, a similar absorption with a linear component at 532 nm, and only linear absorption at 570 nm in the vicinity of water monomer peaks. D2O absorption is weaker and linear at 405 nm. Van't Hoff plots constructed at 405.26 nm suggest that for dimerization, Keq=0.056±0.02 atm−1, ΔH°301 K=−16.6±2 kJ mol−1 and ΔS°301 K=−80±10 J mol−1 K−1. This transition peaks at 409.5 nm, could be attributed to the 8th overtone of water dimer and the 532 nm absorption to the 6th overtone. It is possible that some lower overtones previously searched for are less enhanced. These absorptions could increase water vapor feed back calculations leading to higher global temperature projections with currently projected greenhouse gas levels or greater cooling from greenhouse gas reductions.

  15. Design of Optoelectric Detection Circuit for Difference Absorption Gas Sensor

    Institute of Scientific and Technical Information of China (English)

    2006-01-01

    Since the gas infrared absorption spectrum linewidth is only several nanometers occupying the source intensity of several in a thousand, it is even less than the noise of light source. The signal of gas absorption is submerged in the noise, so it is impossible to measure the concentration of gas with spectrum absorption directly. According to the principle and parameters of difference absorption system of CH4 gas, a detection circuit consisted of the lock-in amplifier is designed. The experiment results indicated that the detection circuit can satisfy the demand of the whole system, and the limit concentration is 150×10-6.

  16. An electronic state of the chromophore, phycocyanobilin, and its interaction with the protein moiety in C-phycocyanin: protonation of the chromophore

    Science.gov (United States)

    Kikuchi, Hiroto; Sugimoto, Tohru; Mimuro, Mamoru

    1997-08-01

    An electronic state of phycocyanobilin (PCB, a derivative of an open tetrapyrrole) in C-phycocyanin, an antenna pigment-protein complex for photosynthesis, was estimated by including the effect of an electrostatic field of protein moieties and water molecules. We adapted our unique method for calculation of the resonance integral. The observed absorption wavelength and an oscillator strength were reproduced only when the PCB was assigned to the protonated form with a net charge of 1. This was rationalized by the negative charge of a specific aspartate residue which was equidistant from the two nitrogen atoms of two central pyrrole rings.

  17. [Intestinal absorption kinetics of flurbiprofen in rats].

    Science.gov (United States)

    Peng, Jun-Jie; Lin, Cong-Cong; Li, Jiang; Zhu, Zhi-Hong; Yang, Xing-Gang; Pan, Wei-San

    2013-03-01

    To study the in situ intestinal absorption kinetics of flrubiprofen in rats, the absorption of flurbiprofen in small intestine (duodenum, jejunum and ileum) and colon of rats was investigated using in situ single-pass perfusion method and the drug content was measured by HPLC. The effects of drug concentration on the intestinal absorption were investigated. The K(a) and P(app) values of flurbiprofen in the small intestine and colon had no significant difference (P > 0.05). Drug concentration (4.0, 10.0 and 16.0 mg x L(-1)) had no significant influence on the K(a) values (P > 0.05). However, when concentration was 4.0 mg x L(-1) and 10.0 mg x L(-1), significant effect on the P(app) values (P 0.05). The K(a) and P(app) values of flurbiprofen on the perfusion flow rate had significant difference (P Flurbiprofen could be absorbed at all segments of the intestine in rats and had no special absorption window. The absorption of flurbiprofen complies with the facilitated diffusion in the general intestinal segments, and accompany with the cytopsistransport mechanism probably. The perfusion flow rate had significant effect on the K(a) and P(app).

  18. Revisiting Absorptive Capacity

    DEFF Research Database (Denmark)

    de Araújo, Ana Luiza Lara; Ulhøi, John Parm; Lettl, Christopher

    Absorptive capacity has mostly been perceived as a 'passive' outcome of R&D investments. Recently, however, a growing interest into its 'proactive' potentials has emerged. This paper taps into this development and proposes a dynamic model for conceptualizing the determinants of the complementary...... learning processes of absorptive capacity, which comprise combinative and adaptive capabilities. Drawing on survey data (n=169), the study concludes that combinative capabilities primarily enhance transformative and exploratory learning processes, while adaptive capabilities strengthen all three learning...

  19. Aerosol Effects on the Estimation of the Carbon Dioxide Concentration From the Measurements of Solar Absorption Spectra at an Altitude of 800 Meters by Using the FTS (GOSAT-BBM) in SWIR Region

    Science.gov (United States)

    Yoshida, Y.; Tanaka, T.; Saito, R.; Oguma, H.; Morino, I.; Aoki, K.; Machida, T.; Yokota, T.

    2007-12-01

    The Greenhouse gases Observing SATellite (GOSAT) is scheduled to be launched in 2008 to observe tropospheric CO2 and CH4 from space. We developed a retrieval algorithm, which simultaneously estimates the CO2 column concentration and the surface albedo from a spectrum of surface scattered solar radiation at 1.6 μm region measured by Thermal And Near infrared Sensor for carbon Observation - Fourier Transform Spectrometer (TANSO-FTS) aboard GOSAT. To validate and improve the retrieval algorithm, a field experiment was conducted from 1st to 18th December, 2006 using a bread board model (BBM) of the FTS. The surface scattered solar spectra were measured by BBM, which was installed at the terminal station of the cable car near the summit of Mt. Tsukuba (at an altitude of about 800 m). In-situ CO2 censors (NDIR) and skyradiometers were set up at the surface target point and near the BBM for the continuous measurements. Also, CO2 profile was observed in-situ by Cessna aircraft near the surface up to altitude of 3km. Data obtained with no cloud condition were analyzed. The CO2 column concentrations (CCO2) were retrieved with the assumption of with and without the boundary layer aerosol. Optical properties of aerosol were estimated from the skyradiometer measurements. The difference between the CCO2 with and without aerosol had good correlation with the aerosol optical thickness at 1.6 μm, and -0.1 to 0.6 % change in the CCO2 occurred due to aerosol. Most of the CCO2 agreed with in-situ observation within 1.0 % but the maximum difference reached up to 3.0 %.

  20. N-Annulated perylene-substituted and fused porphyrin dimers with intense near-infrared one-photon and two-photon absorption

    KAUST Repository

    Luo, Jie

    2015-01-21

    Fusion of two N-annulated perylene (NP) units with a fused porphyrin dimer along the S0-S1 electronic transition moment axis has resulted in new near-infrared (NIR) dyes 1a/1b with very intense absorption (ε>1.3×105M-1cm-1) beyond 1250nm. Both compounds displayed moderate NIR fluorescence with fluorescence quantum yields of 4.4×10-6 and 6.0×10-6 for 1a and 1b, respectively. The NP-substituted porphyrin dimers 2a/2b have also been obtained by controlled oxidative coupling and cyclodehydrogenation, and they showed superimposed absorptions of the fused porphyrin dimer and the NP chromophore. The excited-state dynamics of all of these compounds have been studied by femtosecond transient absorption measurements, which revealed porphyrin dimer-like behaviour. These new chromophores also exhibited good nonlinear optical susceptibility with large two-photon absorption cross-sections in the NIR region due to extended π-conjugation. Time-dependent density functional theory calculations have been performed to aid our understanding of their electronic structures and absorption spectra.

  1. Quantitative Analysis of Protein Concentration by Absorption Peak Integration Method of UV Spectroscopy-Taking Alkaline Phosphatase as an Example%紫外吸收光谱积分法分析蛋白质浓度-以碱性磷酸酶为例

    Institute of Scientific and Technical Information of China (English)

    朱元荣; 吴丰昌; 林樱

    2013-01-01

    利用矿物(针铁矿,蒙脱石)和太湖沉积物吸附碱性磷酸酶(alkaline phosphatase,APase),测定吸附后上清液中剩余碱性磷酸酶浓度时发现其紫外吸收光谱发生了变化,利用传统280 nm处紫外吸收法无法直接准确测定其浓度值.基于对碱性磷酸酶252~305 nm处吸收峰面积积分方法可以消除影响,并准确分析测定碱性磷酸酶浓度.其测定结果与考马斯亮蓝法测定结果进行比较,表明了该方法可以方便,快速和准确地测定此类实验中碱性磷酸酶浓度.同时,该方法还可以扩展至其他蛋白质的定量分析,甚至其他类似实验中,一定程度上克服传统方法应用单波长进行定量分析中存在的易受干扰的缺点.%Adsorption of alkaline phosphatase (APase) on minerals (goethite,montmorillonite) and sediments from Taihu Lake was studied.However,the concentration of alkaline phosphatase in the supernatant cannot be analyzed by the adsorption at 280 nm due to that the UV spectroscopy was changed.Quantitative analysis of alkaline phosphatase in the supernatant by the absorption peak (252~305 nm) integration method of UV spectroscopy was developed.This method determined the concentrations of alkaline phosphatase well.Compared to the results of Bradford,the absorption peak integration method can determine the concentrations of supernatant fast,conveniently,and accurately.This method can also be applied to other protein solution analysis and similar experiments.The drawbacks of traditional single wavelength method (280nm) were overcome to some extent based on the method of absorption peak integration.

  2. Inflow rate-driven changes in the composition and dynamics of chromophoric dissolved organic matter in a large drinking water lake.

    Science.gov (United States)

    Zhou, Yongqiang; Zhang, Yunlin; Jeppesen, Erik; Murphy, Kathleen R; Shi, Kun; Liu, Mingliang; Liu, Xiaohan; Zhu, Guangwei

    2016-09-01

    Drinking water lakes are threatened globally and therefore in need of protection. To date, few studies have been carried out to investigate how the composition and dynamics of chromophoric dissolved organic matter (CDOM) in drinking water lakes are influenced by inflow rate. Such CDOM can lead to unpleasant taste and odor of the water and produce undesirable disinfection byproducts during drinking water treatment. We studied the drinking water Lake Qiandao, China, and found that the concentrations of suspended particulate matter (SPM) in the lake increased significantly with inflow rate (p C3 and a negative relationship between inflow rate and the first principal component (PC1) scores, which, in turn, were negatively related to the concentrations and relative molecular size of CDOM (p < 0.001), i.e. the concentration and molecular size of CDOM entering the lake increased proportionately with inflow rate. Furthermore, stable isotopes (δD and δ(18)O) were depleted in the upstream river mouth relative to downstream remaining lake regions, substantiating that riverine CDOM entering the lake was probably driven by inflow rate. This was further underpinned by remarkably higher mean chlorophyll-a and in situ measured terrestrial CDOM fluorescence (365/480 nm) and apparent oxygen utilization (AOU), and notably lower mean PC1 and CDOM spectral slope (S275-295) recorded in the upstream river mouth than in the downstream main lake area. Strong negative correlations between inflow rate and a(250):a(365), S275-295, and the spectral slope ratio (SR) implied that CDOM input to the lake in rainy period was dominated by larger organic molecules with a more humic-like character. Rainy period, especially rainstorm events, therefore poses a risk to drinking water safety and requires higher removal efficiency of CDOM during drinking water treatment processes. PMID:27192356

  3. Seven-effect absorption refrigeration

    Science.gov (United States)

    DeVault, Robert C.; Biermann, Wendell J.

    1989-01-01

    A seven-effect absorption refrigeration cycle is disclosed utilizing three absorption circuits. In addition, a heat exchanger is used for heating the generator of the low absorption circuit with heat rejected from the condenser and absorber of the medium absorption circuit. A heat exchanger is also provided for heating the generator of the medium absorption circuit with heat rejected from the condenser and absorber of the high absorption circuit. If desired, another heat exchanger can also be provided for heating the evaporator of the high absorption circuit with rejected heat from either the condenser or absorber of the low absorption circuit.

  4. 金属滤筒吸收-红外分光光度法测定淬火油烟的浓度%Determination of Quenching Oil Fumes Concentration by Metal Filter Cylinder-Absorption and Infrared Spectrophotometry

    Institute of Scientific and Technical Information of China (English)

    衡兆祥

    2014-01-01

    Quenching oil fume in the heat treatment process was collected with automatic tracking method. Fiter which collected oil fumes was placed in teflon sleeve with lid. Ultrasonic cleaning was carried out in lab, cleaning liquid was moved in the volumetric flask, then oil content was determined by infrared spectrophotometry. In the range of 0.0-100 mg/L, standard oil concentration detection value was linear with standard value, the correlation coefficient r=0.999 6. The recovery was 85.9%-106.2%, the relative standard deviation was 1.05%-1.92%(n=6), and the detection limit was 0.25 mg/m3. The method is sensitive and accurate, it can be used for testing the effect of enterprises oil fume control, and environmental protection department supervision and monitoring in enterprises fume emission concentration.%用自动跟踪法采集热处理工艺中淬火油烟,将收集油烟的滤芯置于带盖的聚四氟乙烯套筒,用四氯化碳作溶剂进行超声清洗,清洗液移入容量瓶中定容,用红外分光光度法测定油烟含量。在0.0~100 mg/L范围内,标准淬火油质量浓度实测值与与标准值呈良好的线性,相关系数r=0.9996。加标回收率为85.9%~106.2%,相对标准偏差为1.05%~1.92%(n=6),检出限为0.25 mg/m3。该方法灵敏度高,测定结果准确,可用于企业油烟治理效果的验收检测及环保部门对企业淬火油烟排放浓度的监督监测。

  5. Synthesis and light-emitting properties of disubstituted polyacetylenes carrying chromophoric naphthylethynylphenyl pendants.

    Science.gov (United States)

    Lam, Jacky W Y; Qin, Anjun; Dong, Yongqiang; Hong, Yuning; Jim, Cathy K W; Liu, Jianzhao; Dong, Yuping; Kwok, Hoi Sing; Tang, Ben Zhong

    2008-09-11

    Poly(1-phenyl-1-alkyne)s bearing chromophoric pendants and containing alkyl spacers (-{(C 6H 5)CC[(CH 2) m OCOC 6H 4CCNp]} n - [P 1( m) ( m = 3, 4, 9); Np = 1-naphthyl]) were synthesized, and the effects of structural variations on the optical properties, especially electroluminescence, of the polymers were investigated. The monomers were prepared in high yields by esterification and coupling reactions of n-phenyl-( n - 1)-alkyn-1-ols. Selective polymerizations of the 1-phenyl-1-alkyne unit of the monomers were effected by WCl 6-Ph 4Sn catalyst, affording polymers with high molecular weights ( M w up to 63 000) in high yields (up to 83%). Structures and properties of the polymers were characterized and evaluated by IR, NMR, TGA, UV, PL, and EL analyses. All the polymers are thermally very stable, losing almost no weight when heated up to 400 degrees C. Photoexcitation of the polymer solutions induces strong blue light emission at 460 nm, with quantum yields up to 98%. No aggregation quenching was observed when the polymers were fabricated into solid films. Multilayer EL devices with the configuration of ITO/P 1( m):PVK/BCP/Alq 3/LiF/Al were fabricated, which emitted blue light with luminance up to 498 cd/m (2). The device performance varied with the spacer length ( m), with P 1(4) giving the highest external quantum efficiency of 0.47%. The value was further enhanced to 0.86% by optimizing the layer thickness and inserting a hole-injection layer. PMID:18707168

  6. Looking at the Green Fluorescent Protein (GFP) chromophore from a different perspective: a computational insight.

    Science.gov (United States)

    Paul, Bijan Kumar; Guchhait, Nikhil

    2013-02-15

    In the present contribution Density Functional Theory (DFT) has been applied to explore molecular dipole moment, frontier molecular orbital (FMO) features, chemical hardness, and the molecular electrostatic potential surface (MEPS) characteristics for optimized molecular geometry of the Green Fluorescent Protein (GFP) chromophore p-hydroxybenzylideneimidazolinone (HBDI) both in its protonated (neutral) and deprotonated (anion) forms. The distribution of atomic charges over the entire molecular framework as obtained from Natural Bond Orbital (NBO) analysis is found to faithfully replicate the predictions from the MEP map in respect of reactivity map of HBDI (neutral and anion) and possible sites for hydrogen bonding interactions etc. The three dimensional MEP map encompassing the entire molecule yields a reliable reactivity map of HBDI molecule also displaying the most probable regions for non-covalent interactions. The differential distribution of the electrostatic potential over the neutral and anionic species of HBDI is authentically reflected on MEP map and NBO charge distribution analysis. Thermodynamic properties such as heat capacity, thermal energy, enthalpy, entropy have been calculated and the correlation of the various thermodynamic functions with temperature has been established for neutral molecule. More importantly, however, the computational approach has been employed to unveil the nonlinear optical (NLO) properties of protonated (neutral) and deprotonated (anion) HBDI. Also in an endeavor to achieve a fuller understanding on this aspect the effect of basis set on the NLO properties of the title molecule has been investigated. Our computations delineate the discernible differences in NLO properties between the neutral and anionic species of HBDI whereby indicating the possibility of development of photoswitchable NLO device.

  7. Conformational heterogeneity of the Pfr chromophore in plant and cyanobacterial phytochromes.

    Science.gov (United States)

    Velazquez Escobar, Francisco; von Stetten, David; Günther-Lütkens, Mina; Keidel, Anke; Michael, Norbert; Lamparter, Tilman; Essen, Lars-Oliver; Hughes, Jon; Gärtner, Wolfgang; Yang, Yang; Heyne, Karsten; Mroginski, Maria A; Hildebrandt, Peter

    2015-01-01

    Phytochromes are biological photoreceptors that can be reversibly photoconverted between a dark and photoactivated state. The underlying reaction sequences are initiated by the photoisomerization of the tetrapyrrole cofactor, which in plant and cyanobacterial phytochromes are a phytochromobilin (PΦB) and a phycocyanobilin (PCB), respectively. The transition between the two states represents an on/off-switch of the output module activating or deactivating downstream physiological processes. In addition, the photoactivated state, i.e., Pfr in canonical phytochromes, can be thermally reverted to the dark state (Pr). The present study aimed to improve our understanding of the specific reactivity of various PΦB- and PCB-binding phytochromes in the Pfr state by analysing the cofactor structure by vibrational spectroscopic techniques. Resonance Raman (RR) spectroscopy revealed two Pfr conformers (Pfr-I and Pfr-II) forming a temperature-dependent conformational equilibrium. The two sub-states-found in all phytochromes studied, albeit with different relative contributions-differ in structural details of the C-D and A-B methine bridges. In the Pfr-I sub-state the torsion between the rings C and D is larger by ca. 10° compared to Pfr-II. This structural difference is presumably related to different hydrogen bonding interactions of ring D as revealed by time-resolved IR spectroscopic studies of the cyanobacterial phytochrome Cph1. The transitions between the two sub-states are evidently too fast (i.e., nanosecond time scale) to be resolved by NMR spectroscopy which could not detect a structural heterogeneity of the chromophore in Pfr. The implications of the present findings for the dark reversion of the Pfr state are discussed. PMID:26217669

  8. Conformational heterogeneity of the Pfr chromophore in plant and cyanobacterial phytochromes

    Directory of Open Access Journals (Sweden)

    Francisco eVelazquez Escobar

    2015-07-01

    Full Text Available Phytochromes are biological photoreceptors that can be reversibly photoconverted between a dark and photoactivated state. The underlying reaction sequences are initiated by the photoisomerisation of the tetrapyrrole cofactor, which in plant and cyanobacterial phytochromes are a phytochromobilin (PB and a phycocyanobilin (PCB, respectively. The transition between the two states represents an on/off-switch of the output module activating or deactivating downstream physiological processes. In addition, the photoactivated state, i.e. Pfr in canonical phytochromes, can be thermally reverted to the dark state (Pr. The present study aimed to improve our understanding of the specific reactivity of various PB- and PCB-binding phytochromes in the Pfr state by analyzing the cofactor structure by vibrational spectroscopic techniques. Resonance Raman (RR spectroscopy revealed two Pfr conformers (Pfr-I and Pfr-II forming a temperature-dependent conformational equilibrium. The two sub-states - found in all phytochromes studied, albeit with different relative contributions - differ in structural details of the C-D and A-B methine bridges. In the Pfr-I sub-state the torsion between the rings C and D is larger by ca. 10o compared to Pfr-II. This structural difference is presumably related to different hydrogen bonding interactions of ring D as revealed by time-resolved IR spectroscopic studies of the cyanobacterial phytochrome Cph1. The transitions between the two sub-states are evidently too fast (i.e., nanosecond time scale to be resolved by NMR spectroscopy which could not detect a structural heterogeneity of the chromophore in Pfr. The implications of the present findings for the dark reversion of the Pfr state are discussed.

  9. One-pot synthesis and UV-Visible absorption studies of novel tricyclic heterocycle tethered Xanthene-1,8-diones

    Indian Academy of Sciences (India)

    Thirumal Yempala; Balasubramanian Sridhar; Srinivas Kantevari

    2015-05-01

    A series of new tricyclic heterocyclic xanthene-1,8-diones tethered with chromophoric dibenzo [ , ]furan, dibenzo[ , ]thiophene and 9-methyl-9-carbazoles were synthesized through one-pot condensation of dibenzo[ , ]furan-2-carbaldehyde, dibenzo[ , ] thiophene-2-carbaldehyde and 9-methyl-9-carbazole-3-carbaldehyde with cyclic 1,3-dicarbonyls in the presence of recyclable PPA-SiOM2 catalyst under solvent-free conditions. Further, UV-Visible absorption properties of all the synthesized compounds were investigated in CHCl3, THF and acetonitrile.

  10. Standard Practice for Evaluating Solar Absorptive Materials for Thermal Applications

    CERN Document Server

    American Society for Testing and Materials. Philadelphia

    2007-01-01

    1.1 This practice covers a testing methodology for evaluating absorptive materials used in flat plate or concentrating collectors, with concentrating ratios not to exceed five, for solar thermal applications. This practice is not intended to be used for the evaluation of absorptive surfaces that are (1) used in direct contact with, or suspended in, a heat-transfer liquid, (that is, trickle collectors, direct absorption fluids, etc.); (2) used in evacuated collectors; or (3) used in collectors without cover plate(s). 1.2 Test methods included in this practice are property measurement tests and aging tests. Property measurement tests provide for the determination of various properties of absorptive materials, for example, absorptance, emittance, and appearance. Aging tests provide for exposure of absorptive materials to environments that may induce changes in the properties of test specimens. Measuring properties before and after an aging test provides a means of determining the effect of the exposure. 1.3 Th...

  11. 太阳光谱对高分辨吸收光谱反演大气CO2浓度影响的研究%Study on the Effect of Solar Spectra on the Retrieval of Atmospheric CO2 Concentration Using High Resolution Absorption Spectra

    Institute of Scientific and Technical Information of China (English)

    胡振华; 黄腾; 王颖萍; 丁蕾; 郑海洋; 方黎

    2011-01-01

    以太阳光为辐射源的近红外波段高分辨率吸收光谱广泛应用于大气参数遥测.以CO2浓度反演为例,研究了太阳光谱分辨率的影响.利用美国AER公司编制的太阳光谱计算程序得到大气上界的理论计算太阳光谱作为辐射源,结合自行编制的高分辨率大气透过率模拟软件HRATS对大气中CO2平均浓度进行模拟反演.数值模拟计算结果表明,太阳光谱的准确度对浓度反演非常重要,特别是在超分辨光谱反演中异常重要,虽然反演浓度的偏差与观测分辨率没有明显的线性变化规律,但有趋势:观测分辨率的降低对太阳光谱分辨率的要求也降低,为了精确反演大气中CO2浓度,因此需要充分利用大气层顶的高分辨太阳辐射光谱数据.%Taking solar source as radiation in the near-infrared high-resolution absorption spectrum is widely used in remote sensing of atmospheric parameters. The present paper will take retrieval of the concentration of CO2 for example, and study the effect of solar spectra resolution. Retrieving concentrations of CO2 by using high resolution absorption spectra, a method which uses the program provided by AER to calculate the solar spectra at the top of atmosphere as radiation and combine with the HRATS (high resolution atmospheric transmission simulation) to simulate retrieving concentration of CO2. Numerical simulation shows that the accuracy of solar spectrum is important to retrieval, especially in the hyper-resolution spectral retrieavl, and the error of retrieval concentration has poor linear relation with the resolution of observation, but there is a tendency that the decrease in the resolution requires low resolution of solar spectrum. In order to retrieve the concentration of CO2 of atmosphere, the authors' should take full advantage of high-resolution solar spectrum at the top of atmosphere

  12. Impact of transporters in oral absorption

    DEFF Research Database (Denmark)

    Gram, Luise Kvisgaard; Rist, Gerda Marie; Steffansen, Bente

    2009-01-01

    permeation of A275 was concentration dependent and affected by inhibitors or competitive organic anions. Interactions related to transporters in intestinal permeation was clearly demonstrated in the Caco-2 cell model but was not directly evident for in vivo rat absorption. However, an observed biphasic...

  13. Effect of food on absorption of lomefloxacin.

    OpenAIRE

    Hooper, W. D.; Dickinson, R G; Eadie, M. J.

    1990-01-01

    Twelve subjects participated in an open-label, single-dose, balanced three-way crossover study in which the absorptions of lomefloxacin were compared following (i) an overnight fast, (ii) a carbohydrate meal, and (iii) a high-fat meal. The time to peak concentration of lomefloxacin was delayed, but peak concentration in plasma and amount of drug absorbed were unchanged following both meals.

  14. Determination of Lead Content in Phosphate Rock and Concentrate Rock——Flame Atomic Absorption Spectrometric Method%火焰原子吸收光谱法测定磷矿石和精磷矿中的铅含量

    Institute of Scientific and Technical Information of China (English)

    沈治荣; 梁聪; 甘丽; 何红莲

    2011-01-01

    This article describes determination of trace harmful heavy metal-lead element in phosphate rock and concentrate rock with flame atomic absorption spectrometry method.The relative standard deviation of this method is 3.1~14.2%,recovery rate is 90%~104%,the sample detection limit is 0.0008%.The method is accurate,fast,easy,make up for method of determination lead in phosphate rock.It provides effective control method for production of feed additives and fertilizers and so on.%研究了用火焰原子吸收光谱法测定磷矿石或磷精矿中微量的铅的检测方法。此方法的相对标准偏差为3.1%-14.2%,回收率为90%-104%,样品检测下限为0.0008%。

  15. Central cooling: absorptive chillers

    Energy Technology Data Exchange (ETDEWEB)

    Christian, J.E.

    1977-08-01

    This technology evaluation covers commercially available single-effect, lithium-bromide absorption chillers ranging in nominal cooling capacities of 3 to 1,660 tons and double-effect lithium-bromide chillers from 385 to 1,060 tons. The nominal COP measured at operating conditions of 12 psig input steam for the single-effect machine, 85/sup 0/ entering condenser water, and 44/sup 0/F exiting chilled-water, ranges from 0.6 to 0.65. The nominal COP for the double-effect machine varies from 1.0 to 1.15 with 144 psig entering steam. Data are provided to estimate absorption-chiller performance at off-nominal operating conditions. The part-load performance curves along with cost estimating functions help the system design engineer select absorption equipment for a particular application based on life-cycle costs. Several suggestions are offered which may be useful for interfacing an absorption chiller with the remaining Integrated Community Energy System. The ammonia-water absorption chillers are not considered to be readily available technology for ICES application; therefore, performance and cost data on them are not included in this evaluation.

  16. An improving absorption spectrometry method of yeast biomass concentration estimation using thickening agent%增稠剂改进浊度法测定面包酵母生物量的研究

    Institute of Scientific and Technical Information of China (English)

    王震; 郭祥峰; 贾丽华; 李逸娜

    2013-01-01

    Baker's yeast was treated as modeling microorganism which owned a large particle volume.The subsidence phenomenon baker's yeast during turbidity measurement process was studied.The stability of the baker's yeast was improved by adding hydrolyzable anionic polyacrylamide (HPAM) into the suspension.A standard curve between turbidity and yeast concentration was established of in the thickening system.The results showed that the settlement of the yeast cells was effectively prevented by HPAM,the turbidity exhibited good linearity over the range from 0 to 4.9×106cell/mL with a correlation coefficient of 0.9976,and the detection limit was 1.0×104cell/mL.The average recovery was 100.99%,indicating that this method possessed good accuracy for yeast and was suitable for application in microbial biomass quantitative detection in liquid environment.%以面包酵母为模式微生物,研究了大粒径微生物在浊度测量过程中的沉降现象.通过添加增稠剂水解型阴离子聚丙烯酰胺(HPAM),改善了面包酵母悬浮体系的稳定性,并在增稠体系中建立了浊度与酵母浓度的标准曲线.结果表明,增稠体系中HPAM浓度达到0.100g/L时,可以有效阻止酵母细胞的沉降,悬浮液的浊度与细胞浓度在0~4.9×106个/mL范围内呈现良好的线性关系,相关系数R2=0.9976,检出限为1.0×104个/mL.该方法的平均回收率为100.99%,具有良好的准确性,适用于液体环境中微生物生物量的定量检测.

  17. Percutaneous absorption from soil.

    Science.gov (United States)

    Andersen, Rosa Marie; Coman, Garrett; Blickenstaff, Nicholas R; Maibach, Howard I

    2014-01-01

    Abstract Some natural sites, as a result of contaminants emitted into the air and subsequently deposited in soil or accidental industrial release, have high levels of organic and non-organic chemicals in soil. In occupational and recreation settings, these could be potential sources of percutaneous exposure to humans. When investigating percutaneous absorption from soil - in vitro or vivo - soil load, particle size, layering, soil "age" time, along with the methods of performing the experiment and analyzing the results must be taken into consideration. Skin absorption from soil is generally reduced compared with uptake from water/acetone. However, the absorption of some compounds, e.g., pentachlorophenol, chlorodane and PCB 1254, are similar. Lipophilic compounds like dichlorodiphenyltrichloroethane, benzo[A]pyrene, and metals have the tendency to form reservoirs in skin. Thus, one should take caution in interpreting results directly from in vitro studies for risk assessment; in vivo validations are often required for the most relevant risk assessment. PMID:25205703

  18. [Intestinal absorption kinetics of Polygonum capitatum extract in rats].

    Science.gov (United States)

    Yang, Wu; Hou, Jia; Lu, Yuan; Chen, Peng-cheng; Liao, Shang-gao; Huang, Yong

    2015-11-01

    A UPLC-ESI-MS/MS method was used to determinate the main active fractions gallic acid, protocatechuic acid, myricetrin, hyperoside and quercitrin in Polygonum capitatum extracts by in situ intestinal perfusion models; the absorption rate constants and cumulative penetration rate of absorption were calculated. The effect of different drug concentrations, different intestine segments, bile and P-gp inhibitors on the absorption mechanism of Gallic acid and other compositions in P. capitatum extracts. The experimental results showed that gallic acid, protocatechuic acid, myricetrin and quercitrin were observed saturated at high concentration (P absorption and had promotion effect on myricetrin and hyperoside absorption (P absorption of Protocatechuic acid (P absorption of various compositions was that small intestine > colon. This indicated that the absorption mechanism of P. capitatum extracts in rat intestine was in line with fist-order kinetics characteristics. The composition could be absorbed in all of the different intestinal segments, and the absorption was mainly concentrated in small intestine. The protocatechuic acid may be the substrate of P-gp.

  19. Concentrated Ownership

    DEFF Research Database (Denmark)

    Rose, Caspar

    2014-01-01

    , especially minority shareholders. Concentrated ownership is associated with benefits and costs. Concentrated ownership may reduce agency costs by increased monitoring of top management. However, concentrated ownership may also provide dominating owners with private benefits of control....

  20. Size-resolved measurements of brown carbon and estimates of their contribution to ambient fine particle light absorption based on water and methanol extracts

    Science.gov (United States)

    Liu, J.; Bergin, M.; Guo, H.; King, L.; Kotra, N.; Edgerton, E.; Weber, R. J.

    2013-07-01

    Light absorbing organic carbon, often termed brown carbon, has the potential to significantly contribute to the visible light absorption budget, particularly at shorter wavelengths. Currently, the relative contributions of particulate brown carbon to light absorption, as well as the sources of brown carbon are poorly understood. With this in mind field measurements were made at both urban (Atlanta), and rural (Yorkville) sites in Georgia. Measurements in Atlanta were made at both a central site and a road side site adjacent to a main highway near the city center. Fine particle brown carbon optical absorption is estimated based on Mie calculations using direct size resolved measurements of chromophores in filter extracts. Size-resolved atmospheric aerosol samples were collected using a cascade impactor and analyzed for water-soluble organic carbon (WSOC), organic and elemental carbon (OC and EC), and solution light absorption spectra of water and methanol extracts. Methanol extracts were more light-absorbing than water extracts for all size ranges and wavelengths. Absorption refractive indices of the organic extracts were calculated from solution measurements for a range of wavelengths and used with Mie theory to predict the light absorption by fine particles comprised of these components, under the assumption that brown carbon and other aerosol components were externally mixed. For all three sites, chromophores were predominately in the accumulation mode with an aerodynamic mean diameter of 0.5 μm, an optically effective size range resulting in predicted particle light absorption being a factor of 2 higher than bulk solution absorption. Fine particle absorption was also measured with a Multi-Angle Absorption Photometer (MAAP) and seven-wavelength Aethalometer. Scattering-corrected aethalometer and MAAP absorption were in good agreement at 670 nm and Mie-estimated absorption based on size-resolved EC data were within 30% of these optical instruments. When applied

  1. Size-resolved measurements of brown carbon and estimates of their contribution to ambient fine particle light absorption based on water and methanol extracts

    Directory of Open Access Journals (Sweden)

    J. Liu

    2013-07-01

    Full Text Available Light absorbing organic carbon, often termed brown carbon, has the potential to significantly contribute to the visible light absorption budget, particularly at shorter wavelengths. Currently, the relative contributions of particulate brown carbon to light absorption, as well as the sources of brown carbon are poorly understood. With this in mind field measurements were made at both urban (Atlanta, and rural (Yorkville sites in Georgia. Measurements in Atlanta were made at both a central site and a road side site adjacent to a main highway near the city center. Fine particle brown carbon optical absorption is estimated based on Mie calculations using direct size resolved measurements of chromophores in filter extracts. Size-resolved atmospheric aerosol samples were collected using a cascade impactor and analyzed for water-soluble organic carbon (WSOC, organic and elemental carbon (OC and EC, and solution light absorption spectra of water and methanol extracts. Methanol extracts were more light-absorbing than water extracts for all size ranges and wavelengths. Absorption refractive indices of the organic extracts were calculated from solution measurements for a range of wavelengths and used with Mie theory to predict the light absorption by fine particles comprised of these components, under the assumption that brown carbon and other aerosol components were externally mixed. For all three sites, chromophores were predominately in the accumulation mode with an aerodynamic mean diameter of 0.5 μm, an optically effective size range resulting in predicted particle light absorption being a factor of 2 higher than bulk solution absorption. Fine particle absorption was also measured with a Multi-Angle Absorption Photometer (MAAP and seven-wavelength Aethalometer. Scattering-corrected aethalometer and MAAP absorption were in good agreement at 670 nm and Mie-estimated absorption based on size-resolved EC data were within 30% of these optical instruments

  2. A Red/Green Cyanobacteriochrome Sustains Its Color Despite a Change in the Bilin Chromophore's Protonation State.

    Science.gov (United States)

    Song, Chen; Velazquez Escobar, Francisco; Xu, Xiu-Ling; Narikawa, Rei; Ikeuchi, Masahiko; Siebert, Friedrich; Gärtner, Wolfgang; Matysik, Jörg; Hildebrandt, Peter

    2015-09-29

    The second GAF domain of AnPixJ, AnPixJg2, a bilin-binding protein from the cyanobacterium Anabaena PCC 7120, undergoes a photoinduced interconversion between a red-absorbing state, Pr, and a green-absorbing state, Pg. Combining ultraviolet-vis (UV-vis), infrared, resonance Raman (RR), and magic-angle spinning (MAS) nuclear magnetic resonance (NMR) spectroscopy, we have studied this cyanobacteriochrome (CBCR) assembled with phycocyanobilin (PCB) either in vivo or in vitro. In both assembly routes, the spectroscopic data of the Pr state reveal nearly identical chromophore structures with a protonated (cationic) bilin. However, unlike the native (in vivo assembly) Pg photoproduct, in which the bilin retains protonation, the Pg generated from the in vitro-assembled AnPixJg2 harbors a deprotonated (neutral) bilin chromophore at pH 7.8. IR difference spectroscopy further reveals the transfer of a proton from the bilin to a side-chain carboxylate on an amino acid, probably Asp291. Besides the change in protonation state, the bilin structure is very similar in the in vitro- and in vivo-assembled Pg photoproducts. The chromophore of the in vitro Pg becomes protonated when the pH is increased to 10, presumably because of a partial reversal of protein misfolding. Most remarkably, the electronic transitions remain unchanged and are very similar to those of the native Pg. Thus, bilin protonation is not a key parameter for controlling the energies of the electronic transitions in AnPixJg2. Possible alternative molecular mechanisms for color tuning are discussed. PMID:26335286

  3. Bio-optical characterization of offshore NW Mediterranean waters: CDOM contribution to the absorption budget and diffuse attenuation of downwelling irradiance

    Science.gov (United States)

    Pérez, Gonzalo L.; Galí, Martí; Royer, Sarah-Jeanne; Sarmento, Hugo; Gasol, Josep M.; Marrasé, Cèlia; Simó, Rafel

    2016-08-01

    We investigated the peculiar bio-optical characteristics of the Mediterranean Sea focusing on the spectral diffuse attenuation coefficient [Kd (λ)] and its relationship with chlorophyll a concentration (Chl a), complemented with measurements of light absorption by chromophoric dissolved organic matter (CDOM) and the optical properties of particulate material. The non-water absorption budget showed that CDOM was the largest contributor in the 300-600 nm range (>60% of the absorption at 443 nm in the euphotic layer), increasing to 80% within the first optical depth (FOD). This translated into CDOM accounting for >50% of KdBio (λ) (the irradiance attenuation coefficient caused by all non-water absorptions) between 320 and 555 nm and throughout both layers (FOD and euphotic). Indeed, we tested three Chl a-based bio-optical models and all three underestimated Kd (λ), evidencing the importance of CDOM beside Chl a to fully account for light attenuation. The Morel & Maritorena (2001) model (M&M 01) underestimated Kd (λ) in the UV and blue spectral regions within the FOD layer, showing lower differences with increasing wavelengths. The Morel et al. (2007a) model (BGS 07) also underestimated Kd (λ) in the FOD layer, yet it performed much better in the 380-555 nm range. In the euphotic layer, the Morel (1988) model (JGR 88) underestimated Kd (λ) showing higher differences at 412 and 443 nm and also performed better at higher wavelengths. Observed euphotic layer depths (Z1%) were 28 m shallower than those predicted with the M&M 01 empirical relationship, further highlighting the role of CDOM in the bio-optical peculiarity of Mediterranean Sea. In situ measurements of the CDOM index (Φ), an indicator of the deviation of the CDOM-Chl a average relationship for Case 1 waters, gave a mean of 5.9 in the FOD, consistent with simultaneous estimates from MODIS (4.8±0.4). The implications of the bio-optical anomaly for ecological and biogeochemical inferences in the

  4. Carbon Dioxide Absorption in a Membrane Contactor with Color Change

    Science.gov (United States)

    Pantaleao, Ines; Portugal, Ana F.; Mendes, Adelio; Gabriel, Joaquim

    2010-01-01

    A pedagogical experiment is described to examine the physical absorption of gases, in this case carbon dioxide, in a hollow fiber membrane contactor (HFMC) where the absorption concentration profile can be followed by a color change. The HFMC is used to teach important concepts and can be used in interesting applications for students, such as…

  5. Competition between photodetachment and autodetachment of the 21ππ* state of the green fluorescent protein chromophore anion

    International Nuclear Information System (INIS)

    Using a combination of photoelectron spectroscopy measurements and quantum chemistry calculations, we have identified competing electron emission processes that contribute to the 350–315 nm photoelectron spectra of the deprotonated green fluorescent protein chromophore anion, p-hydroxybenzylidene-2,3-dimethylimidazolinone. As well as direct electron detachment from S0, we observe resonant excitation of the 21ππ* state of the anion followed by autodetachment. The experimental photoelectron spectra are found to be significantly broader than photoelectron spectrum calculated using the Franck-Condon method and we attribute this to rapid (∼10 fs) vibrational decoherence, or intramolecular vibrational energy redistribution, within the neutral radical

  6. Competition between photodetachment and autodetachment of the {2^1π π ^*} state of the green fluorescent protein chromophore anion

    Science.gov (United States)

    Mooney, Ciarán R. S.; Parkes, Michael A.; Zhang, Lijuan; Hailes, Helen C.; Simperler, Alexandra; Bearpark, Michael J.; Fielding, Helen H.

    2014-05-01

    Using a combination of photoelectron spectroscopy measurements and quantum chemistry calculations, we have identified competing electron emission processes that contribute to the 350-315 nm photoelectron spectra of the deprotonated green fluorescent protein chromophore anion, p-hydroxybenzylidene-2,3-dimethylimidazolinone. As well as direct electron detachment from S0, we observe resonant excitation of the 21ππ* state of the anion followed by autodetachment. The experimental photoelectron spectra are found to be significantly broader than photoelectron spectrum calculated using the Franck-Condon method and we attribute this to rapid (˜10 fs) vibrational decoherence, or intramolecular vibrational energy redistribution, within the neutral radical.

  7. ZINDO-SOS Studies on Second-order Nonlinear Optical Properties of Thiophene S,S-Dioxide Chromophores

    Institute of Scientific and Technical Information of China (English)

    2002-01-01

    The second-order nonlinear optical properties of thiophene S,S-dioxides derivatives were studied by using the ZINDO-SOS method. The computed results show that the thiophene S,S-dioxide derivatives exhibit larger second-order polarizabilities than their thiophene precursors. In order to clarify the origin of the different NLO responses among these chromophores, their electron properties and frontier orbital properties were investigated as well. These thiophene S,S-dioxides derivatives are good candidates for their application in electro-optical device due to their high nonlinearities, good thermal and photo stabilities.

  8. Corrosion inhibitor for aqueous ammonia absorption system

    Science.gov (United States)

    Phillips, Benjamin A.; Whitlow, Eugene P.

    1998-09-22

    A method of inhibiting corrosion and the formation of hydrogen and thus improving absorption in an ammonia/water absorption refrigeration, air conditioning or heat pump system by maintaining the hydroxyl ion concentration of the aqueous ammonia working fluid within a selected range under anaerobic conditions at temperatures up to 425.degree. F. This hydroxyl ion concentration is maintained by introducing to the aqueous ammonia working fluid an inhibitor in an amount effective to produce a hydroxyl ion concentration corresponding to a normality of the inhibitor relative to the water content ranging from about 0.015 N to about 0.2 N at 25.degree. C. Also, working fluids for inhibiting the corrosion of carbon steel and resulting hydrogen formation and improving absorption in an ammonia/water absorption system under anaerobic conditions at up to 425.degree. F. The working fluids may be aqueous solutions of ammonia and a strong base or aqueous solutions of ammonia, a strong base, and a specified buffer.

  9. Intestinal absorption of biotin in the rat

    International Nuclear Information System (INIS)

    We examined the absorption of biotin using the in vivo intestinal loop technique. Jejunal segments from male rats were filled with solutions containing [3H]biotin and [14C]inulin in Krebs-Ringer phosphate buffer, pH 6.5. Absorption was determined on the basis of luminal tritium disappearance after correction for inulin recovery. At biotin concentrations of 0.1 and 5.0 microM, luminal biotin disappearance was linear for at least 10 min. At biotin concentrations ranging from 2.3 nM to 75 microM, 10-28% of the administered dose was absorbed in 10 min. The concentration dependence of luminal biotin disappearance is consistent with the presence of both saturable and nonsaturable (linear) components of biotin uptake, with estimated Km = 9.6 microM and Jmax = 75.2 pmol/(2.5 cm loop X min). The rate constant for nonsaturable uptake is 3.1 pmol/(2.5 cm loop X min X microM). We conclude that at biotin concentrations less than 5 microM, biotin absorption proceeds largely by the saturable process, whereas at concentrations above 25 microM, nonsaturable uptake predominates. Additional studies demonstrated significantly less biotin uptake in the ileum than in the jejunum, a finding in agreement with previous in vitro studies

  10. Chemical Absorption Materials

    DEFF Research Database (Denmark)

    Thomsen, Kaj

    2011-01-01

    Chemical absorption materials that potentially can be used for post combustion carbon dioxide capture are discussed. They fall into five groups, alkanolamines, alkali carbonates, ammonia, amino acid salts, and ionic liquids. The chemistry of the materials is discussed and advantages and drawbacks...

  11. Absorption driven focus shift

    Science.gov (United States)

    Harrop, N.; Wolf, S.; Maerten, O.; Dudek, K.; Ballach, S.; Kramer, R.

    2016-03-01

    Modern high brilliance near infrared lasers have seen a tremendous growth in applications throughout the world. Increased productivity has been achieved by higher laser power and increased brilliance of lasers. Positive impacts on the performance and costs of parts are opposed to threats on process stability and quality, namely shift of focus position over time. A high initial process quality will be reduced by contamination of optics, eventually leading to a focus shift or even destruction of the optics. Focus analysis at full power of multi-kilowatt high brilliance lasers is a very demanding task because of high power densities in the spot and the high power load on optical elements. With the newly developed high power projection optics, the High-Power Micro-Spot Monitor High Brilliance (HP-MSM-HB) is able to measure focus diameter as low as 20 μm at power levels up to 10 kW at very low internal focus shift. A main driving factor behind thermally induced focus shift is the absorption level of the optical element. A newly developed measuring system is designed to determine the relative absorption level in reference to a gold standard. Test results presented show a direct correlation between absorption levels and focus shift. The ability to determine the absorption level of optical elements as well as their performance at full processing power before they are put to use, enables a high level of quality assurance for optics manufacturers and processing head manufacturers alike.

  12. ZINC ABSORPTION BY INFANTS

    Science.gov (United States)

    Zinc is a vital mineral in human nutrition, and rare cases of overt zinc deficiency are well described in term and preterm infants. A variety of methods have been developed to assess zinc absorption, retention, and balance in humans, either using mass (metabolic) balance or stable isotope-based METH...

  13. The Experimental Research of R-Phycoerythrin and Its Chromophore Polypeptides in the Photodynamic Therapy of Cancer%R-藻红蛋白色基多肽对肿瘤细胞光动力杀伤作用的实验研究

    Institute of Scientific and Technical Information of China (English)

    黄蓓; 李振刚; 王广策; 刘基东; 孙海宝; 曾呈奎

    2001-01-01

    首次用胃酶降解及CM Sephedex C-50柱层析法获得了6种藻红蛋白的色基多 肽,并用藻红蛋白及其色基多肽对两种肿瘤细胞作体外激光疗法增敏作用实验.S180 小鼠腹水癌细胞株培养后分别用浓度为10、25、50、100μg/mL的藻红蛋白及其色基 多肽处理,经波长为488nm的氩离子激光辐照(照射剂量为28.8//cm2),用MTT法 检测,其细胞的生存率最佳效果分别可达45%及16%,显示出良好的剂量效应.在激 光处理藻红蛋白及其色基多肽对HL60人白血病细胞所做的细胞生长曲线图的比较 中可看出,色基多肽的激光增敏作用要优于藻红蛋白多聚体.%It is the first time that six kinds of Chromophore Polypeptides of R-Phycoerythrin (R-PE) were obtained from polysiphona urceolata by pepsin and CM-Sephedex C50 . In order to compare the differetiation between R-PE and its Chromophore Polypeptides, two kinds of tumor cell lines were used for an the experiment of photodynamic therapy (PDT) in vitro. S180 cell line was first treated with dif ferent concentrations of R-PE and its Chromophore Polypeptides , and then irradiated with Ar-iron laser ( 488nm, 28.8 J/cm2). The survival rate was measured by MIT method. Moreover, the growth rate of HL60 cells , which was treated with R-PE and its Chromophore Polypeptides. The results show that the PDT effect of Chromophore Polypeptides is better than R-PE.

  14. Concentration device

    DEFF Research Database (Denmark)

    2013-01-01

    A concentration device (2) for filter filtration concentration of particles (4) from a volume of a fluid (6). The concentration device (2) comprises a filter (8) configured to filter particles (4) of a predefined size in the volume of the fluid (6). The concentration device (2) comprises...

  15. Selective gas absorption by ionic liquids

    DEFF Research Database (Denmark)

    Shunmugavel, Saravanamurugan; Kegnæs, Søren; Due-Hansen, Johannes;

    2010-01-01

    Reversible absorption performance for the flue gas components CO 2, NO and SO2 has been tested for several different ionic liquids (ILs) at different temperatures and flue gas compositions. Furthermore, different porous, high surface area carriers have been applied as supports for the ionic liquids...... to obtain Supported Ionic Liquid-Phase (SILP) absorber materials. The use of solid SILP absorbers with selected ILs were found to significantly improve the absorption capacity and sorption dynamics at low flue gas concentration, thus making the applicability of ILs viable in technical, continuous flow...... processes for flue gas cleaning. The results show that CO 2, NO and SO2 can be reversible and selective absorbed using different ILs and that Supported Ionic Liquid-Phase (SILP) absorbers are promising materials for industrial flue gas cleaning. Absorption/desorption dynamics can be tuned by temperatures...

  16. Synthesis, characterization and DFT study of methoxybenzylidene containing chromophores for DSSC materials

    KAUST Repository

    Al-Sehemi, Abdullah G.

    2012-06-01

    Novel tricyanovinyl derived from hydrazones have been prepared by the reaction of tetracyanoethylene and phenylethylidene hydrazone, and these dyes showed absorption in the region of 539-650 nm. The dyes showed pronounced solvatochromic effects as the polarity of the solvents changed. The torsion in E isomer is smaller than Z and azo isomers of MBD1 and MBD2. The HOMOs are delocalized on whole of the molecule while LUMOs are distributed on the tricarbonitrile. The LUMO energies are above the conduction band of TiO 2 and HOMOs of the dyes are below the redox couple of MBD1 and MBD2. The HOMO energies, LUMO energies and HOMO-LUMO energy gap of MBD1 and MBD2 are almost same. The absorption spectra of both the dyes in different solvents are approximately same except in cyclohexane. © 2012 Elsevier B.V. All rights reserved.

  17. Fluorescence from Multiple Chromophore Hydrogen-Bonding States in the Far-Red Protein TagRFP675.

    Science.gov (United States)

    Konold, Patrick E; Yoon, Eunjin; Lee, Junghwa; Allen, Samantha L; Chapagain, Prem P; Gerstman, Bernard S; Regmi, Chola K; Piatkevich, Kiryl D; Verkhusha, Vladislav V; Joo, Taiha; Jimenez, Ralph

    2016-08-01

    Far-red fluorescent proteins are critical for in vivo imaging applications, but the relative importance of structure versus dynamics in generating large Stokes-shifted emission is unclear. The unusually red-shifted emission of TagRFP675, a derivative of mKate, has been attributed to the multiple hydrogen bonds with the chromophore N-acylimine carbonyl. We characterized TagRFP675 and point mutants designed to perturb these hydrogen bonds with spectrally resolved transient grating and time-resolved fluorescence (TRF) spectroscopies supported by molecular dynamics simulations. TRF results for TagRFP675 and the mKate/M41Q variant show picosecond time scale red-shifts followed by nanosecond time blue-shifts. Global analysis of the TRF spectra reveals spectrally distinct emitting states that do not interconvert during the S1 lifetime. These dynamics originate from photoexcitation of a mixed ground-state population of acylimine hydrogen bond conformers. Strategically tuning the chromophore environment in TagRFP675 might stabilize the most red-shifted conformation and result in a variant with a larger Stokes shift. PMID:27447848

  18. Lake and sea populations of Mysis relicta (Crustacea, Mysida with different visual-pigment absorbance spectra use the same A1 chromophore.

    Directory of Open Access Journals (Sweden)

    Nikolai Belikov

    Full Text Available Glacial-relict species of the genus Mysis (opossum shrimps inhabiting both fresh-water lakes and brackish sea waters in northern Europe show a consistent lake/sea dichotomy in eye spectral sensitivity. The absorbance peak (λmax recorded by microspectrophotometry in isolated rhabdoms is invariably 20-30 nm red-shifted in "lake" compared with "sea" populations. The dichotomy holds across species, major opsin lineages and light environments. Chromophore exchange from A1 to A2 (retinal → 3,4-didehydroretinal is a well-known mechanism for red-shifting visual pigments depending on environmental conditions or stages of life history, present not only in fishes and amphibians, but in some crustaceans as well. We tested the hypothesis that the lake/sea dichotomy in Mysis is due to the use of different chromophores, focussing on two populations of M. relicta from, respectively, a Finnish lake and the Baltic Sea. They are genetically very similar, having been separated for less than 10 kyr, and their rhabdoms show a typical lake/sea difference in λmax (554 nm vs. 529 nm. Gene sequencing has revealed no differences translating into amino acid substitutions in the transmembrane parts of their opsins. We determined the chromophore identity (A1 or A2 in the eyes of these two populations by HPLC, using as standards pure chromophores A1 and A2 as well as extracts from bovine (A1 and goldfish (A2 retinas. We found that the visual-pigment chromophore in both populations is A1 exclusively. Thus the spectral difference between these two populations of M. relicta is not due to the use of different chromophores. We argue that this conclusion is likely to hold for all populations of M. relicta as well as its European sibling species.

  19. Ruthenium(II) dendrimers containing carbazole-based chromophores as branches

    OpenAIRE

    McClenaghan, ND; Passalacqua, R; Loiseau, F; Campagna, S; Verheyde, B; Hameurlaine, Ahmed; Dehaen, Wim

    2003-01-01

    Three new luminescent and redox-active Ru(II) complexes containing novel dendritic polypyridine ligands have been synthesized, and their absorption spectra, luminescence properties (both at room temperature in fluid solution and at 77 K in rigid matrix), and redox behavior have been investigated. The dendritic ligands are made of 1,10-phenanthroline coordinating subunits and of carbazole groups as branching sites, The first and second generation species of this novel class of dendritic ligand...

  20. Ultraschall-Geschwindigkeit und-Absorption in Bi-In-Schmelzen /Ultrasonic Velocity and Absorption in Bi-In-melts

    Science.gov (United States)

    Bek, R.; Steeb, S.

    1981-02-01

    Using the pulse-echo method the ultrasonic velocity and absorption was measured with Bi-In-melts in the temperature range from liquidus up to more than 600 °C. The frequencies used reached from 10 MHz up to 130 MHz. Within the experimental accuracy no frequency dependence of the absorption coefficient α/f2 could be detected. An excess absorption can be observed, which for the molten elements can be explained by fluctuations of the packing density. For the molten alloys additionally concentration fluctuations play an important role. Thus an understanding of the temperature dependency of the ultrasonic velocity and absorption can be achieved.

  1. Structure of the red fluorescent protein from a lancelet (Branchiostoma lanceolatum): a novel GYG chromophore covalently bound to a nearby tyrosine

    International Nuclear Information System (INIS)

    The crystal structure of the novel red emitting fluorescent protein from lancelet Branchiostoma lanceolatum (Chordata) revealed an unusual five residues cyclic unit comprising Gly58-Tyr59-Gly60 chromophore, the following Phe61 and Tyr62 covalently bound to chromophore Tyr59. A key property of proteins of the green fluorescent protein (GFP) family is their ability to form a chromophore group by post-translational modifications of internal amino acids, e.g. Ser65-Tyr66-Gly67 in GFP from the jellyfish Aequorea victoria (Cnidaria). Numerous structural studies have demonstrated that the green GFP-like chromophore represents the ‘core’ structure, which can be extended in red-shifted proteins owing to modifications of the protein backbone at the first chromophore-forming position. Here, the three-dimensional structures of green laGFP (λex/λem = 502/511 nm) and red laRFP (λex/λem ≃ 521/592 nm), which are fluorescent proteins (FPs) from the lancelet Branchiostoma lanceolatum (Chordata), were determined together with the structure of a red variant laRFP-ΔS83 (deletion of Ser83) with improved folding. Lancelet FPs are evolutionarily distant and share only ∼20% sequence identity with cnidarian FPs, which have been extensively characterized and widely used as genetically encoded probes. The structure of red-emitting laRFP revealed three exceptional features that have not been observed in wild-type fluorescent proteins from Cnidaria reported to date: (i) an unusual chromophore-forming sequence Gly58-Tyr59-Gly60, (ii) the presence of Gln211 at the position of the conserved catalytic Glu (Glu222 in Aequorea GFP), which proved to be crucial for chromophore formation, and (iii) the absence of modifications typical of known red chromophores and the presence of an extremely unusual covalent bond between the Tyr59 Cβ atom and the hydroxyl of the proximal Tyr62. The impact of this covalent bond on the red emission and the large Stokes shift (∼70 nm) of laRFP was verified

  2. Structure of the red fluorescent protein from a lancelet (Branchiostoma lanceolatum): a novel GYG chromophore covalently bound to a nearby tyrosine

    Energy Technology Data Exchange (ETDEWEB)

    Pletnev, Vladimir Z., E-mail: vzpletnev@gmail.com; Pletneva, Nadya V.; Lukyanov, Konstantin A.; Souslova, Ekaterina A.; Fradkov, Arkady F.; Chudakov, Dmitry M.; Chepurnykh, Tatyana; Yampolsky, Ilia V. [Russian Academy of Sciences, Moscow (Russian Federation); Wlodawer, Alexander [National Cancer Institute, Frederick, MD 21702 (United States); Dauter, Zbigniew [National Cancer Institute, Argonne, IL 60439 (United States); Pletnev, Sergei, E-mail: vzpletnev@gmail.com [National Cancer Institute, Argonne, IL 60439 (United States); SAIC-Frederick, Argonne, IL 60439 (United States); Russian Academy of Sciences, Moscow (Russian Federation)

    2013-09-01

    The crystal structure of the novel red emitting fluorescent protein from lancelet Branchiostoma lanceolatum (Chordata) revealed an unusual five residues cyclic unit comprising Gly58-Tyr59-Gly60 chromophore, the following Phe61 and Tyr62 covalently bound to chromophore Tyr59. A key property of proteins of the green fluorescent protein (GFP) family is their ability to form a chromophore group by post-translational modifications of internal amino acids, e.g. Ser65-Tyr66-Gly67 in GFP from the jellyfish Aequorea victoria (Cnidaria). Numerous structural studies have demonstrated that the green GFP-like chromophore represents the ‘core’ structure, which can be extended in red-shifted proteins owing to modifications of the protein backbone at the first chromophore-forming position. Here, the three-dimensional structures of green laGFP (λ{sub ex}/λ{sub em} = 502/511 nm) and red laRFP (λ{sub ex}/λ{sub em} ≃ 521/592 nm), which are fluorescent proteins (FPs) from the lancelet Branchiostoma lanceolatum (Chordata), were determined together with the structure of a red variant laRFP-ΔS83 (deletion of Ser83) with improved folding. Lancelet FPs are evolutionarily distant and share only ∼20% sequence identity with cnidarian FPs, which have been extensively characterized and widely used as genetically encoded probes. The structure of red-emitting laRFP revealed three exceptional features that have not been observed in wild-type fluorescent proteins from Cnidaria reported to date: (i) an unusual chromophore-forming sequence Gly58-Tyr59-Gly60, (ii) the presence of Gln211 at the position of the conserved catalytic Glu (Glu222 in Aequorea GFP), which proved to be crucial for chromophore formation, and (iii) the absence of modifications typical of known red chromophores and the presence of an extremely unusual covalent bond between the Tyr59 C{sup β} atom and the hydroxyl of the proximal Tyr62. The impact of this covalent bond on the red emission and the large Stokes shift (

  3. Accurate Spectral Fits of Jupiter's Great Red Spot: VIMS Visual Spectra Modelled with Chromophores Created by Photolyzed Ammonia Reacting with Acetyleneχ±

    Science.gov (United States)

    Baines, Kevin; Sromovsky, Lawrence A.; Fry, Patrick M.; Carlson, Robert W.; Momary, Thomas W.

    2016-10-01

    We report results incorporating the red-tinted photochemically-generated aerosols of Carlson et al (2016, Icarus 274, 106-115) in spectral models of Jupiter's Great Red Spot (GRS). Spectral models of the 0.35-1.0-micron spectrum show good agreement with Cassini/VIMS near-center-meridian and near-limb GRS spectra for model morphologies incorporating an optically-thin layer of Carlson (2016) aerosols at high altitudes, either at the top of the tropospheric GRS cloud, or in a distinct stratospheric haze layer. Specifically, a two-layer "crème brûlée" structure of the Mie-scattering Carlson et al (2016) chromophore attached to the top of a conservatively scattering (hereafter, "white") optically-thick cloud fits the spectra well. Currently, best agreement (reduced χ2 of 0.89 for the central-meridian spectrum) is found for a 0.195-0.217-bar, 0.19 ± 0.02 opacity layer of chromophores with mean particle radius of 0.14 ± 0.01 micron. As well, a structure with a detached stratospheric chromophore layer ~0.25 bar above a white tropospheric GRS cloud provides a good spectral match (reduced χ2 of 1.16). Alternatively, a cloud morphology with the chromophore coating white particles in a single optically- and physically-thick cloud (the "coated-shell model", initially explored by Carlson et al 2016) was found to give significantly inferior fits (best reduced χ2 of 2.9). Overall, we find that models accurately fit the GRS spectrum if (1) most of the optical depth of the chromophore is in a layer near the top of the main cloud or in a distinct separated layer above it, but is not uniformly distributed within the main cloud, (2) the chromophore consists of relatively small, 0.1-0.2-micron-radius particles, and (3) the chromophore layer optical depth is small, ~ 0.1-0.2. Thus, our analysis supports the exogenic origin of the red chromophore consistent with the Carlson et al (2016) photolytic production mechanism rather than an endogenic origin, such as upwelling of material

  4. [Study of retrieving formaldehyde with differential optical absorption spectroscopy].

    Science.gov (United States)

    Li, Yu-Jin; Xie, Pin-Hua; Qin, Min; Qu, Xiao-Ying; Hu, Lin

    2009-01-01

    The present paper introduces the method of retrieving the concentration of HCHO with differential optical absorption spectroscopy (DOAS). The authors measured ambient HCHO in Beijing region with the help of differential optical absorption spectroscopy instrument made by ourself, and discussed numerous factors in retrieving the concentration of HCHO with differential optical absorption spectroscopy (DOAS), especially, the choice of HCHO wave band, how to avoid absorption of ambient SO2, NO2 and O3, and the influence of the Xenon lamp spectrum structure on the absorption of ambient HCHO. The authors achieved the HCHO concentration by simultaneously retrieving the concentrations of HCHO, SO2, NO2 and O3 with non-linear least square fitting method, avoiding the effect of choosing narrow wave of HCHO and the residual of SO2, NO2, O3 and the Xenon lamp spectrum structure in retrieving process to attain the concentration of HCHO, Finally the authors analyzed the origin of error in retrieving the concentration of HCHO with differential optical absorption spectroscopy (DOAS), and the total error is within 13.7% in this method. PMID:19385238

  5. Elliptical concentrators.

    Science.gov (United States)

    Garcia-Botella, Angel; Fernandez-Balbuena, Antonio Alvarez; Bernabeu, Eusebio

    2006-10-10

    Nonimaging optics is a field devoted to the design of optical components for applications such as solar concentration or illumination. In this field, many different techniques have been used to produce optical devices, including the use of reflective and refractive components or inverse engineering techniques. However, many of these optical components are based on translational symmetries, rotational symmetries, or free-form surfaces. We study a new family of nonimaging concentrators called elliptical concentrators. This new family of concentrators provides new capabilities and can have different configurations, either homofocal or nonhomofocal. Translational and rotational concentrators can be considered as particular cases of elliptical concentrators. PMID:17068595

  6. Absorptive Capacity and Diversity

    DEFF Research Database (Denmark)

    Kristinsson, Kári

    that contribute to the neo-Schumpeterian economics literature and hopefully inspires further research into this area. The main findings of the dissertation can be divided into four distinct parts. First, diversity of individuals within firms is associated with firm innovative performance. This is in line......One of the most influential contributions to neo-Schumpeterian economics is Cohen and Levinthal‘s papers on absorptive capacity. Since their publication in the late 1980s and early 1990s the concept absorptive capacity has had substantial impact on research in economics and management, including...... international business, organizational economics, strategic management, technology management and last but not least neo-Schumpeterian economics. The goal of this dissertation is to examine what many consider as neglected arguments from the work by Cohen and Levinthal and thereby illuminate an otherwise...

  7. Acoustic absorption by sunspots

    Science.gov (United States)

    Braun, D. C.; Labonte, B. J.; Duvall, T. L., Jr.

    1987-01-01

    The paper presents the initial results of a series of observations designed to probe the nature of sunspots by detecting their influence on high-degree p-mode oscillations in the surrounding photosphere. The analysis decomposes the observed oscillations into radially propagating waves described by Hankel functions in a cylindrical coordinate system centered on the sunspot. From measurements of the differences in power between waves traveling outward and inward, it is demonstrated that sunspots appear to absorb as much as 50 percent of the incoming acoustic waves. It is found that for all three sunspots observed, the amount of absorption increases linearly with horizontal wavenumber. The effect is present in p-mode oscillations with wavelengths both significantly larger and smaller than the diameter of the sunspot umbrae. Actual absorption of acoustic energy of the magnitude observed may produce measurable decreases in the power and lifetimes of high-degree p-mode oscillations during periods of high solar activity.

  8. Acoustic absorption by sunspots

    Energy Technology Data Exchange (ETDEWEB)

    Braun, D.C.; Labonte, B.J.; Duvall, T.L. Jr.

    1987-08-01

    The paper presents the initial results of a series of observations designed to probe the nature of sunspots by detecting their influence on high-degree p-mode oscillations in the surrounding photosphere. The analysis decomposes the observed oscillations into radially propagating waves described by Hankel functions in a cylindrical coordinate system centered on the sunspot. From measurements of the differences in power between waves traveling outward and inward, it is demonstrated that sunspots appear to absorb as much as 50 percent of the incoming acoustic waves. It is found that for all three sunspots observed, the amount of absorption increases linearly with horizontal wavenumber. The effect is present in p-mode oscillations with wavelengths both significantly larger and smaller than the diameter of the sunspot umbrae. Actual absorption of acoustic energy of the magnitude observed may produce measurable decreases in the power and lifetimes of high-degree p-mode oscillations during periods of high solar activity. 10 references.

  9. Uranium GI absorption coefficients for young children

    International Nuclear Information System (INIS)

    Uranium is ubiquitously found in drinking water and food. The absorption fraction (f1) is an important parameter in risk assessment of uranium burdens from ingestion. Although absorption of uranium from the gastrointestinal tract (GI) has been studied extensively in both animals and humans in the past, human data among young children are rare. In a previous study based on measurements of uranium concentration in only 11 bone-ash samples collected by Health Canada, the GI absorption coefficient for uranium ingestion by infants, about 3 months of age were determined. The result was 0.256 which was much higher than the ICRP recommended f1 values of 0.04 for infants and 0.02 for anyone more than 1 year of age. To extend the study, a total of 73 bone-ash samples were selected for children ranging in age from 0 to 7 years. The estimated absorption coefficients were 0.093±0.113 for infants, and 0.050±0.032 for 1 - 7 years of age. This study provides human absorption coefficients of ingested uranium for young children of two age groups. (author)

  10. Zinc absorption in inflammatory bowel disease

    Energy Technology Data Exchange (ETDEWEB)

    Valberg, L.S.; Flanagan, P.R.; Kertesz, A.; Bondy, D.C.

    1986-07-01

    Zinc absorption was measured in 29 patients with inflammatory bowel disease and a wide spectrum of disease activity to determine its relationship to disease activity, general nutritional state, and zinc status. Patients with severe disease requiring either supplementary oral or parenteral nutrition were excluded. The mean 65ZnCl2 absorption, in the patients, determined using a 65Zn and 51Cr stool-counting test, 45 +/- 17% (SD), was significantly lower than the values, 54 +/- 16%, in 30 healthy controls, P less than 0.05. Low 65ZnCl2 absorption was related to undernutrition, but not to disease activity in the absence of undernutrition or to zinc status estimated by leukocyte zinc measurements. Mean plasma zinc or leukocyte zinc concentrations in patients did not differ significantly from controls, and only two patients with moderate disease had leukocyte zinc values below the 5th percentile of normal. In another group of nine patients with inflammatory bowel disease of mild-to-moderate severity and minimal nutritional impairment, 65Zn absorption from an extrinsically labeled turkey test meal was 31 +/- 10% compared to 33 +/- 7% in 17 healthy controls, P greater than 0.1. Thus, impairment in 65ZnCl2 absorption in the patients selected for this study was only evident in undernourished persons with moderate or severe disease activity, but biochemical evidence of zinc deficiency was uncommon, and clinical features of zinc depletion were not encountered.

  11. pH-Induced changes in electronic absorption and fluorescence spectra of phenazine derivatives

    Science.gov (United States)

    Ryazanova, O. A.; Voloshin, I. M.; Makitruk, V. L.; Zozulya, V. N.; Karachevtsev, V. A.

    2007-04-01

    The visible electronic absorption and fluorescence spectra as well as fluorescence polarization degrees of imidazo-[4,5-d]-phenazine (F1), 2-methylimidazo-[4,5-d]-phenazine (F2), 2-trifluoridemethylimidazo-[4,5-d]-phenazine (F3), 1,2,3-triazole-[4,5-d]-phenazine (F4) and their glycosides, imidazo-[4,5-d]-phenazine-N1-β- D-ribofuranoside (F1rib), 1,2,3-triazole-[4,5-d]-phenazine-N1-β- D-glucopyranoside (F4gl), were investigated in aqueous buffered solutions over the pH range of 0-12, where the spectral transformations were found to be reversible. The effects of protonation and deprotonation on spectral properties of these dyes were studied. We have determined the ranges of pH, where individual ionic species are predominant. In aqueous buffered solutions the fluorescence was found only for neutral species of F1, F1rib, F2, and F4gl dyes, whereas for the ionic forms of these dyes, as well as for F3 and F4 ones, the fluorescence has not been detected. The concentrational deprotonation p Ka values were evaluated from experimental data. It was shown that donor-acceptor properties of the substituent group in the second position of the pentagonal ring substantially affect the values of the deprotonation constants and the character of protonation for chromophore. The substitution of a hydrogen atom in the NH-group by the sugar residue blocks the formation of the anionic species, and results in enhancement of the dye emission intensity. The steep emission dependence for F1 and F1rib over pH range of 0-7 with intensities ratio of IpH 7/ IpH 1 = 60 allows us to propose them as possible indicator dyes in luminescence based pH sensors for investigation of processes accompanied by acidification, e.g. as gastric pH-sensors. A comparative analysis of the studied dyes has shown that F4gl is the most promising compound to be used as a fluorescent probe for investigation of molecular hybridization of nucleic acids.

  12. Study on the elemental mercury absorption cross section based on differential optical absorption spectroscopy

    Science.gov (United States)

    Zheng, Haiming; Yao, Penghui

    2015-08-01

    With the method of ultraviolet absorption spectrum, the exact absorption cross-section with the light source of the low-pressure mercury lamp was determined, during which the optimum wavelength for mercury concentrations inversion was 253.69 nm, the highest detection limit was 0.177 μg/cm3, and the lowest detection limit was 0.034 μg/cm3. Furthermore, based on the differential optical absorption spectroscopy(DOAS), the relationship between the integral parameters (IP) and the concentration as well as the signal-noise ration (SNR) under the conditions of gas flow was determined and the lowest detection limit was figured out to be 0.03524 μg/cm3, providing a method of DOAS to de-noise through the comparison between the mercury concentration values produced by DOAS and that produced by the wavelet de-noising method (db5). It turned out that the differential optical absorption spectroscopy had a strong anti-interference ability, while the wavelet de-noising method was not suitable for measuring the trace concentration change.

  13. Concentrator Photovoltaics

    CERN Document Server

    Luque, Antonio L

    2007-01-01

    Photovoltaic solar-energy conversion is one of the most promising technologies for generating renewable energy, and conversion of concentrated sunlight can lead to reduced cost for solar electricity. In fact, photovoltaic conversion of concentrated sunlight insures an efficient and cost-effective sustainable power resource. This book gives an overview of all components, e.g. cells, concentrators, modules and systems, for systems of concentrator photovoltaics. The authors report on significant results related to design, technology, and applications, and also cover the fundamental physics and market considerations. Specific contributions include: theory and practice of sunlight concentrators; an overview of concentrator PV activities; a description of concentrator solar cells; design and technology of modules and systems; manufacturing aspects; and a market study.

  14. Direct correlation of charge transfer absorption with molecular donor:acceptor interfacial area via photothermal deflection spectroscopy

    KAUST Repository

    Domingo, Ester

    2015-04-09

    We show that the Charge Transfer (CT) absorption signal in bulk-heterojunction (BHJ) solar cell blends, measured by photothermal deflection spectroscopy (PDS), is directly proportional to the density of molecular donor/acceptor interfaces. Since the optical transitions from ground state to the interfacial CT state are weakly allowed at photon energies below the optical gap of both donor and acceptor, we can exploit the use of this sensitive linear absorption spectroscopy for such quantification. Moreover, we determine the absolute molar extinction coefficient of the CT transition for an archetypical polymer-fullerene interface. The latter is ~100 times lower than the extinction coefficient of the donor chromophore involved, allowing us to experimentally estimate the transition dipole moment (0.3 D) and the electronic coupling between ground state and CT state to be on the order of 30 meV.

  15. Pion absorption processes

    International Nuclear Information System (INIS)

    Proton and deuteron production from low-energy pion absorption in light nuclei leading to discrete and continuum states were measured. The LEP beam line at LAMPF was used with a stack of 8 intrinsic germanium crystals. The proton energy spectra are in general characterized by a broad bump at an energy approximately corresponding to π+d → pp reaction kinematics, suggestive of pion absorption on 2 nucleons. The energy-integrated cross-section for production of deuterons has an angular distribution similar to that for production of protons. The dependence of the total pion absorption cross-section on A is explained using a semi-classical model for pion transport in nuclei. The (π+,p) as well as (π+,d) reactions generally favor transitions involving larger angular momentum transfer to the residual nucleus when states of similar nuclear structure are considered. The low-energy excitation spectra from the (π+,p) reaction are similar to the spectra from (p,d) reaction on 12C and 13C. However, a calculation of the (π+,p) cross-section using the measured (p,d) reaction with the formulation of Wilkin to relate the two reactions is in moderate disagreement with the measured (π+,p) cross-sections. The excitation spectra from the (π+,p) reaction indicte the importance of two-step processes for the reaction. The (π+,d) reaction leading to the ground state of -- residual nucleus has been seen for 7Li, 12C, and 13C targets. The measured cross section for the 12C(π+,d)10C reaction to the 2+ state is much higher than that for the ground state. For the case of 18O, no counts were seen for excitation energy of +,d) reaction

  16. Absorption heat pumps

    Science.gov (United States)

    Huhtinen, M.; Heikkilae, M.; Andersson, R.

    1987-03-01

    The aim of the study was to analyze the technical and economic feasibility of absorption heat pumps in Finland. The work was done as a case study: the technical and economic analyses have been carried out for six different cases, where in each the suitable size and type of the heat pump plant and the auxiliary components and connections were specified. The study also detailed the costs concerning the procurement, installation and test runs of the machinery, as well as the savings in energy costs incurred by the introduction of the plant. Conclusions were drawn of the economic viability of the applications studied. The following cases were analyzed: heat recovery from flue gases and productin of district heat in plants using peat, natural gas, and municipal wastes as a fuel. Heat recovery in the pulp and paper industry for the upgrading of pressure of secondary steam and for the heating of white liquor and combustion and drying the air. Heat recovery in a peat-fulled heat and power plant from flue gases that have been used for the drying of peat. According to the study, the absorption heat pump suits best to the production of district heat, when the heat source is the primary energy is steam produced by the boiler. Included in the flue as condensing is the purification of flue gases. Accordingly, benefit is gained on two levels in thick applications. In heat and power plants the use of absorption heat pumps is less economical, due to the fact that the steam used by the pump reduces the production of electricity, which is rated clearly higher than heat.

  17. Scattering with absorptive interaction

    Science.gov (United States)

    Cassing, W.; Stingl, M.; Weiguny, A.

    1982-07-01

    The S matrix for a wide class of complex and nonlocal potentials is studied, with special attention given to the motion of singularities in the complex k plane as a function of the imaginary coupling strength. Modifications of Levinson's theorem are obtained and discussed. Analytic approximations to the S matrix in the vicinity of narrow resonances are exhibited and compared to numerical results of resonating-group calculations. The problem of defining resonances in the case of complex interactions is discussed, making contact with the usual analysis of scattering in terms of Argand diagrams. NUCLEAR REACTIONS Scattering theory, S matrix for absorptive potentials.

  18. Absorption in dielectric models

    CERN Document Server

    Churchill, R J

    2015-01-01

    We develop a classical microscopic model of a dielectric. The model features nonlinear interaction terms between polarizable dipoles and lattice vibrations. The lattice vibrations are found to act as a pseudo-reservoir, giving broadband absorption of electromagnetic radiation without the addition of damping terms in the dynamics. The effective permittivity is calculated using a perturbative iteration method and is found to have the form associated with real dielectrics. Spatial dispersion is naturally included in the model and we also calculate the wavevector dependence of the permittivity.

  19. Ferrocene-quinoxaline Y-shaped chromophores as fascinating second-order NLO building blocks for long lasting highly active SHG polymeric films.

    Science.gov (United States)

    Senthilkumar, Kabali; Thirumoorthy, Krishnan; Dragonetti, Claudia; Marinotto, Daniele; Righetto, Stefania; Colombo, Alessia; Haukka, Matti; Palanisami, Nallasamy

    2016-07-26

    The first example of a Y-shaped ferrocene quinoxaline derivative with a surprisingly high and stable second harmonic generation (SHG) response in composite polymeric films is reported. The interesting quadratic hyperpolarizability values of different substituted Y-shaped chromophores are also investigated in solution by the EFISH technique.

  20. Exploring Chromophore-Binding Pocket: High-Resolution Solid-State H-C Interfacial Correlation NMR Spectra with Windowed PMLG Scheme.

    Science.gov (United States)

    Song, Chen; Lang, Christina; Mailliet, Jo; Hughes, Jon; Gärtner, Wolfgang; Matysik, Jörg

    2012-02-01

    High-resolution two-dimensional (2D) (1)H-(13)C heteronuclear correlation spectra are recorded for selective observation of interfacial 3-5.5 Å contacts of the uniformly (13)C-labeled phycocyanobilin (PCB) chromophore with its unlabeled binding pocket. The experiment is based on a medium- and long-distance heteronuclear correlation (MELODI-HETCOR) method. For improving (1)H spectral resolution, a windowed phase-modulated Lee-Goldburg (wPMLG) decoupling scheme is applied during the t(1) evolution period. Our approach allows for identification of chromophore-protein interactions, in particular for elucidation of the hydrogen-bonding networks and charge distributions within the chromophore-binding pocket. The resulting pulse sequence is tested on the cyanobacterial (Cph1) phytochrome sensory module (residues 1-514, Cph1Δ2) containing uniformly (13)C- and (15)N-labeled PCB chromophore (u-[(13)C,(15)N]-PCB-Cph1Δ2) at 17.6 T. PMID:22303079

  1. Geospatial Absorption and Regional Effects

    Directory of Open Access Journals (Sweden)

    IOAN MAC

    2009-01-01

    Full Text Available The geospatial absorptions are characterized by a specific complexity both in content and in their phenomenological and spatial manifestation fields. Such processes are differentiated according to their specificity to pre-absorption, absorption or post-absorption. The mechanisms that contribute to absorption are extremely numerous: aggregation, extension, diffusion, substitution, resistivity (resilience, stratification, borrowings, etc. Between these mechanisms frequent relations are established determining an amplification of the process and of its regional effects. The installation of the geographic osmosis phenomenon in a given territory (a place for example leads to a homogenization of the geospatial state and to the installation of the regional homogeneity.

  2. Conjugated polymers with pyrrole as the conjugated bridge: synthesis, characterization, and two-photon absorption properties.

    Science.gov (United States)

    Li, Qianqian; Zhong, Cheng; Huang, Jing; Huang, Zhenli; Pei, Zhiguo; Liu, Jun; Qin, Jingui; Li, Zhen

    2011-07-14

    The synthesis, one- and two-photon absorption (2PA) and emission properties of two novel pyrrole-based conjugated polymers (P1 and P2) are reported. They emitted strong yellow-green and orange fluorescence with fluorescent quantum yields (Φ) of 46 and 33%, respectively. Their maximal 2PA cross sections (δ) measured by the two-photon-induced fluorescence method using femtosecond laser pulses in THF were 2392 and 1938 GM per repeating unit, respectively, indicating that the 2PA chromophores consisting of the triphenylamine with nonplanar structure as the donor and electron-rich pyrrole as the conjugated bridge could be the effective repeating units to enhance the δ values.

  3. Observing heme doming in myoglobin with femtosecond X-ray absorption spectroscopy

    Directory of Open Access Journals (Sweden)

    M. Levantino

    2015-07-01

    Full Text Available We report time-resolved X-ray absorption measurements after photolysis of carbonmonoxy myoglobin performed at the LCLS X-ray free electron laser with nearly 100 fs (FWHM time resolution. Data at the Fe K-edge reveal that the photoinduced structural changes at the heme occur in two steps, with a faster (∼70 fs relaxation preceding a slower (∼400 fs one. We tentatively attribute the first relaxation to a structural rearrangement induced by photolysis involving essentially only the heme chromophore and the second relaxation to a residual Fe motion out of the heme plane that is coupled to the displacement of myoglobin F-helix.

  4. Evidences of long lived cages in functionalized polymers: Effects on chromophore dynamic and spectroscopic properties

    Science.gov (United States)

    Prampolini, Giacomo; Monti, Susanna; De Mitri, Nicola; Barone, Vincenzo

    2014-05-01

    correlation never vanishes, at least in the first 3 ns.From a different point of view, it can be inferred that the limited number of possible orientations of the molecule inside the cage is strongly related to the flexibility of the cage itself. Correlation between the constrained dynamics of the dye and the formation of hindering cages was investigated by computing the probability that a neighboring unit (either a toluene molecule or a methylene group of the polymer) remains within the first shell after a definite time. Comparison between the two embeddings reveals that a complete renewal of the original first neighbor shell takes place within few hundreds of ps in toluene solution, whereas the probability of remaining within the polymer cage never completely decays during the first 3 ns. Even more interestingly, the residence function in the polymer exhibits a plateau in a time interval very close to the one found for the translational and re-orientational motion of the dye.The hypothesis that the long lived cage found around the chromophore and sketched in Figure 4 is effectively responsible for the difference in the experimental broadening [23], UV/visible spectra were simulated by averaging the vertical optical transitions computed at TD-DFT level on different sets of snapshots, extracted from MD-NPT trajectories performed on the dye in its EES, in toluene solution [13] and in the polymer matrix [27]. The resulting emission spectra are shown in Figure 5. In the top panel the experimental [23] spectra are displayed, recorded in toluene solution 1.4·10-5 M (green) and in polymer film (orange). It may be worth mentioning that the polymer degree of crystallinity in such conditions is very low (∼5%). [31,32] It is evident that notwithstanding the different environment, the maximum emission wavelengths are not remarkably shifted, being 360 and 365 nm, respectively. On the contrary, as observed by Passaglia and coworkers [23], a major difference appears in the line shape of

  5. [Intestinal absorption kinetics of Polygonum capitatum extract in rats].

    Science.gov (United States)

    Yang, Wu; Hou, Jia; Lu, Yuan; Chen, Peng-cheng; Liao, Shang-gao; Huang, Yong

    2015-11-01

    A UPLC-ESI-MS/MS method was used to determinate the main active fractions gallic acid, protocatechuic acid, myricetrin, hyperoside and quercitrin in Polygonum capitatum extracts by in situ intestinal perfusion models; the absorption rate constants and cumulative penetration rate of absorption were calculated. The effect of different drug concentrations, different intestine segments, bile and P-gp inhibitors on the absorption mechanism of Gallic acid and other compositions in P. capitatum extracts. The experimental results showed that gallic acid, protocatechuic acid, myricetrin and quercitrin were observed saturated at high concentration (P inhibition effect on protocatechuic acid absorption and had promotion effect on myricetrin and hyperoside absorption (P colon. This indicated that the absorption mechanism of P. capitatum extracts in rat intestine was in line with fist-order kinetics characteristics. The composition could be absorbed in all of the different intestinal segments, and the absorption was mainly concentrated in small intestine. The protocatechuic acid may be the substrate of P-gp. PMID:27071271

  6. Recent Advances in Stimuli-Responsive Photofunctional Materials Based on Accommodation of Chromophore into Layered Double Hydroxide Nanogallery

    Directory of Open Access Journals (Sweden)

    Wu Li

    2013-01-01

    Full Text Available The assembly of photofunctional molecules into host matrices has become an important strategy to achieve tunable fluorescence and to develop intelligent materials. The stimuli-responsive photofunctional materials based on chromophores-assembled layered double hydroxides (LDHs have received much attention from both academic and industry fields as a result of their advantages, such as high photo/thermal stability, easy processing, and well reversibility, which can construct new types of smart luminescent nanomaterials (e.g., ultrathin film and nanocomposite for sensor and switch applications. In this paper, external environmental stimuli have mainly involved physical (such as temperature, pressure, light, and electricity and chemical factors (such as pH and metal ion; recent progress on the LDH-based organic-inorganic stimuli-responsive materials has been summarized. Moreover, perspectives on further development of these materials are also discussed.

  7. Recent Advances in Stimuli-Responsive Photo functional Materials Based on Accommodation of Chromophore into Layered Double Hydroxide Nano gallery

    International Nuclear Information System (INIS)

    The assembly of photo functional molecules into host matrices has become an important strategy to achieve tunable fluorescence and to develop intelligent materials. The stimuli-responsive photo functional materials based on chromophores-assembled layered double hydroxides (LDHs) have received much attention from both academic and industry fields as a result of their advantages, such as high photo/thermal stability, easy processing, and well reversibility, which can construct new types of smart luminescent nano materials (e.g., ultrathin film and nano composite) for sensor and switch applications. In this paper, external environmental stimuli have mainly involved physical (such as temperature, pressure, light, and electricity) and chemical factors (such as ph and metal ion); recent progress on the LDH-based organic-inorganic stimuli-responsive materials has been summarized. Moreover, perspectives on further development of these materials are also discussed

  8. LanFP10-A, first functional fluorescent protein whose chromophore contains the elusive mutation G67A.

    Science.gov (United States)

    Roldán-Salgado, Abigail; Sánchez-Barreto, Celidee; Gaytán, Paul

    2016-11-01

    Since Green Fluorescent Protein (GFP) was first successfully expressed in heterologous systems in 1994, many genes encoding other natural autofluorescent proteins (AFPs) have been cloned and subsequently modified by protein engineering to improve their physicochemical properties. Throughout this twenty-two-year period, glycine 67 (Gly67) has been regarded as the only amino acid in the entire protein family that is essential for the formation of the different reported chromophores. In this work, we demonstrate that a synthetic gene encoding LanFP10-A, a natural protein encoded in the genome of the lancelet Branchiostoma floridae containing the G67A mutation, produces a heterologous, functional yellow fluorescent protein when expressed in E. coli. In contrast to LanFP10-A, LanFP6-A, a second GFP-like protein found in the lancelet genome that also contains the natural G67A mutation, was non-fluorescent.

  9. Theoretical Investigation on the Electron and Energy Transfer between Peripheral Carrier Transport Groups and Central Chromophores in Electroluminescent Materials

    Institute of Scientific and Technical Information of China (English)

    潘玉钰; 刘丹丹; 许海; 刘晓冬; 孙冠楠; 杨兵; 马於光

    2012-01-01

    The molecular materials with structures of luminescent core and peripheral carrier groups (e.g. carbazoles), have exhibited high-performance in organic light-emitting diodes (OLEDs). Present work is to understand the basic process of electronic and energy exchange between the peripheral functional groups and the central core through quantum chemical analysis. As an example, 4,7-bis(9,9-bis(6-(9H-carbazol-9-yl)hexyl)-9H-fluoren-2-yl)benzo[c]- [1,2,5]thiadiazole (TCBzC) is investigated in regards to optoelectronic properties using density functional theory (DFT). The results suggest that the forbidden transition from peripheral carbazole to the central chromophore core makes for separated electrical and optical properties, and high performance electroluminescence (EL) is mainly at- tributed to the energy-transfer from carbazoles to the fluorene derivative core.

  10. Highly efficient non-doped deep blue fluorescent emitters with horizontal emitting dipoles using interconnecting units between chromophores.

    Science.gov (United States)

    Kim, Kwon-Hyeon; Baek, Jang Yeol; Cheon, Chan Woo; Moon, Chang-Ki; Sim, Bomi; Choi, Myeong Yong; Kim, Jang-Joo; Kim, Yun-Hi

    2016-09-21

    New deep blue fluorescent emitters composed of anthracene as an electron rich unit, a diphenyltriazine as a strong electron acceptor unit, and phenyl or xylene as interconnecting units were synthesised. The interconnecting unit between chromophores increased the singlet transition energy and the ratio of horizontal emitting dipoles. As a result, a non-doped blue fluorescent organic light-emitting diode (OLED) using a new emitter was demonstrated, with an external quantum efficiency (EQE) of 6.6% and Commision Internationale de l'Eclairage (CIE) colour coordinates of (0.145, 0.068). This device performance has been the highest EQE observed in deep blue non-doped OLEDs with CIE coordinates less than (0.145, 0.068) to date. PMID:27524501

  11. Experimental tests of the correlated chromophore domain model of self-healing in a dye-doped polymer

    CERN Document Server

    Ramini, Shiva K; Kuzyk, Mark G

    2013-01-01

    Temperature dependent photodegradation and recovery studies of Dipserse Orange 11 (DO11) dye dissolved in poly(methyl methacrylate) and polystyrene polymer hosts are used as a test of the recently proposed correlated chromophore domain model.[1] This model posits that dye molecules form domains or aggregates. The nature of aggregation or how it mediates self healing is not yet well understood. In this paper we present qualitative evidence that supports the hypothesis that the dye molecules undergo a change to a tautomer state with higher dipole moment and hydrogen bond with the amines and keto oxygens of the polymer. Groupings of such molecules in a polymer chain form what we call a domain, and interactions between molecules in a domain make them more robust to photodegradation and mediate self healing.

  12. Absorption Spectra of Astaxanthin Aggregates

    CERN Document Server

    Olsina, Jan; Minofar, Babak; Polivka, Tomas; Mancal, Tomas

    2012-01-01

    Carotenoids in hydrated polar solvents form aggregates characterized by dramatic changes in their absorption spectra with respect to monomers. Here we analyze absorption spectra of aggregates of the carotenoid astaxanthin in hydrated dimethylsulfoxide. Depending on water content, two types of aggregates were produced: H-aggregates with absorption maximum around 390 nm, and J-aggregates with red-shifted absorption band peaking at wavelengths >550 nm. The large shifts with respect to absorption maximum of monomeric astaxanthin (470-495 nm depending on solvent) are caused by excitonic interaction between aggregated molecules. We applied molecular dynamics simulations to elucidate structure of astaxanthin dimer in water, and the resulting structure was used as a basis for calculations of absorption spectra. Absorption spectra of astaxanthin aggregates in hydrated dimethylsulfoxide were calculated using molecular exciton model with the resonance interaction energy between astaxanthin monomers constrained by semi-e...

  13. Electromagnetically-enhanced saturable absorption

    CERN Document Server

    Su, Chun-Hsu; Beausoleil, Raymond G; Hollenberg, Lloyd C L; Munro, William J; Nemoto, Kae; Spiller, Timothy P

    2009-01-01

    Electromagnetically-induced transparency (EIT) exploits quantum coherence to burn subnatural linewidth holes within a spectral line. It is typically discussed in the context of a pump-probe configuration in a three-level L system, where the pump is often significantly stronger than the probe. Here we remove such restrictions on the relative intensities of pump and probe fields, and furthermore show that the absorptive properties associated with EIT can be of benefit in absorptive nonlinear processes, especially saturable absorption. We show that in a three-level medium near the EIT condition, we can generate saturable absorption qualitatively similar to two-state saturable absorption. The difference is that we can explore saturable absorption against the ground-state dephasing, rather than spontaneous emission. This has the advantages of significantly more controllability, and more importantly, different intensity scalings in the absorption. Such effects could prove useful for signal regeneration at very low ...

  14. [Absorption of extractive Polygonum orientale in rat everted gut sacs].

    Science.gov (United States)

    Liu, Yue; Tang, Li; Cao, Xu; Zheng, Lin; Wang, Ai-Min; Huang, Yong

    2014-06-01

    Using in vitro everted gut to investigate the intestinal absorption of the extracts from Polygonum orientale at different concentration. UPLC-MS/MS was used to detect the content of protocatechuic acid, isoorientin, orientin, vitexin, cynaroside, quercitrin, kaempferol-rhamnoside in different intestinal segments, then compared the results with the absorption of chemical components of extractive P. orientale in each intestinal segments, and calculated the absorption parameter. We took the statistic analysis with SPSS statistic software. The influence significance of each factors were analyzed to describe the character of absorption. The absorption of each component is linearity in different intestinal segments and different dose, and the square of coeficient correlation exceed 0.95, which consistent with zero order rate process. The K(a) increase along with the raised dosage of the extractive P. orientale (R2 > 0.95), indicated it is the passive absorption; different intestinal segments have different absorption. And the absorption trend in intestinal is duodenum, jejunum, ileum are greater than the colon. As ingredients are selectively absorbed in intestinal sac, the everted intestinal sac method is selected to assess the intestinal absorption charcteristics of ingredients of extractive P. orientale. PMID:25272855

  15. The HI absorption 'Zoo'

    CERN Document Server

    Gereb, K; Morganti, R; Oosterloo, T A

    2014-01-01

    We present an analysis of the HI absorption in a sample of 101 flux-selected radio AGN (S_1.4 GHz > 50 mJy) observed with the Westerbork Synthesis Radio Telescope (WSRT). HI absorption is detected in 32 galaxies, showing a broad variety of widths, shapes and kinematical properties. We characterize the HI spectra of the individual detections using the busy function (Westmeier et al. 2014). With the goal of identifying different morphological structures of HI, we study the kinematical and radio source properties of the detections as function of their width. Narrow lines (FWHM = 500 km/s). These detections are good candidates for being HI outflows. The detection rate of HI outflows is 5 percent in the total radio AGN sample. This fraction represents a lower limit, however it could suggests that, if outflows are a characteristic phenomenon of all radio sources, they would have a short depletion timescale compared to the lifetime of the AGN. Blueshifted and broad/asymmetric lines are more often present among young...

  16. Kinetic isotope effect studies on the de novo rate of chromophore formation in fast- and slow-maturing GFP variants†

    Science.gov (United States)

    Pouwels, Lauren J.; Zhang, Liping; Chan, Nam H.; Dorrestein, Pieter C.; Wachter, Rebekka M.

    2009-01-01

    The maturation process of green fluorescent protein (GFP) entails a protein oxidation reaction triggered by spontaneous backbone condensation. The chromophore is generated by full conjugation of the Tyr66 phenolic group with the heterocycle, a process that requires C-H bond scission at the benzylic carbon. We have prepared isotope-enriched protein bearing tyrosine residues deuterated at the beta carbon, and have determined kinetic isotope effects (KIEs) on the GFP self-processing reaction. Progress curves for the production of H2O2 and the mature chromophore were analyzed by global curve fitting to a three-step mechanism describing pre-oxidation, oxidation and post-oxidation events. Although a KIE for protein oxidation could not be discerned (kH/kD = 1.1 ± 0.2), a full primary KIE of 5.9 (± 2.8) was extracted for the post-oxidation step. Therefore, the exocyclic carbon is not involved in the reduction of molecular oxygen. Rather, C-H bond cleavage proceeds from the oxidized cyclic imine form, and is the rate-limiting event of the final step. Substantial pH-dependence of maturation was observed upon substitution of the catalytic glutamate (E222Q), indicating an apparent pKa of 9.4 (± 0.1) for the base catalyst. For this variant, a KIE of 5.8 (± 0.4) was determined for the intrinsic time constant that is thought to describe the final step, as supported by ultra-high resolution mass spectrometric results. The data are consistent with general base catalysis of the post-oxidation events yielding green color. Structural arguments suggest a mechanism in which the highly conserved Arg96 serves as catalytic base in proton abstraction from the Tyr66-derived beta carbon. PMID:18759496

  17. Kinetic isotope effect studies on the de novo rate of chromophore formation in fast- and slow-maturing GFP variants.

    Science.gov (United States)

    Pouwels, Lauren J; Zhang, Liping; Chan, Nam H; Dorrestein, Pieter C; Wachter, Rebekka M

    2008-09-23

    The maturation process of green fluorescent protein (GFP) entails a protein oxidation reaction triggered by spontaneous backbone condensation. The chromophore is generated by full conjugation of the Tyr66 phenolic group with the heterocycle, a process that requires C-H bond scission at the benzylic carbon. We have prepared isotope-enriched protein bearing tyrosine residues deuterated at the beta carbon, and have determined kinetic isotope effects (KIEs) on the GFP self-processing reaction. Progress curves for the production of H 2O 2 and the mature chromophore were analyzed by global curve fitting to a three-step mechanism describing preoxidation, oxidation and postoxidation events. Although a KIE for protein oxidation could not be discerned ( k H/ k D = 1.1 +/- 0.2), a full primary KIE of 5.9 (+/-2.8) was extracted for the postoxidation step. Therefore, the exocyclic carbon is not involved in the reduction of molecular oxygen. Rather, C-H bond cleavage proceeds from the oxidized cyclic imine form, and is the rate-limiting event of the final step. Substantial pH-dependence of maturation was observed upon substitution of the catalytic glutamate (E222Q), indicating an apparent p K a of 9.4 (+/-0.1) for the base catalyst. For this variant, a KIE of 5.8 (+/-0.4) was determined for the intrinsic time constant that is thought to describe the final step, as supported by ultra-high resolution mass spectrometric results. The data are consistent with general base catalysis of the postoxidation events yielding green color. Structural arguments suggest a mechanism in which the highly conserved Arg96 serves as catalytic base in proton abstraction from the Tyr66-derived beta carbon. PMID:18759496

  18. Removal of Chromophore-proximal Polar Atoms Decreases Water Content and Increases Fluorescence in a Near Infrared Phytofluor

    Directory of Open Access Journals (Sweden)

    Heli eLehtivuori

    2015-11-01

    Full Text Available Genetically encoded fluorescent markers have revolutionized cell and molecular biology due to their biological compatibility, controllable spatiotemporal expression, and photostability. To achieve in vivo imaging in whole animals, longer excitation wavelength probes are needed due to the superior ability of near infrared light to penetrate tissues unimpeded by absorbance from biomolecules or autofluorescence of water. Derived from near infrared-absorbing bacteriophytochromes, phytofluors are engineered to fluoresce in this region of the electromagnetic spectrum, although high quantum yield remains an elusive goal. An invariant aspartate residue is of utmost importance for photoconversion in native phytochromes, presumably due to the proximity of its backbone carbonyl to the pyrrole ring nitrogens of the biliverdin (BV chromophore as well as the size and charge of the side chain. We hypothesized that the polar interaction network formed by the charged side chain may contribute to the decay of the excited state via proton transfer. Thus, we chose to further probe the role of this amino acid by removing all possibility for polar interactions with its carboxylate side chain by incorporating leucine instead. The resultant fluorescent protein, WiPhy2, maintains BV binding, monomeric status, and long maximum excitation wavelength while minimizing undesirable protoporphyrin IXα binding in cells. A crystal structure and time-resolved fluorescence spectroscopy reveal that water near the BV chromophore is excluded and thus validate our hypothesis that removal of polar interactions leads to enhanced fluorescence by increasing the lifetime of the excited state. This new phytofluor maintains its fluorescent properties over a broad pH range and does not suffer from photobleaching. WiPhy2 achieves the best compromise to date between high fluorescence quantum yield and long illumination wavelength in this class of fluorescent proteins.

  19. AIE Based Coumarin Chromophore - Evaluation and Correlation Between Solvatochromism and Solvent Polarity Parameters.

    Science.gov (United States)

    Lanke, Sandip K; Sekar, Nagaiyan

    2016-03-01

    A new class of red emitting extensively conjugated donor-π-acceptor type dyes bearing coumarin units have been synthesized by condensation of 7-(diethylamino)-2-oxo-2 H-chromene-3-carbaldehyde with different active methylenes. All the dyes are characterized by (1)H NMR, (13)C NMR and HRMS spectroscopy. The photophysical behaviour and the relation between structure and properties of the coumarin "push-pull" derivatives were investigated experimentally. The dyes exhibited positive solvatochromism and solvatofluorism in solution of varying polarity. These coumarin dyes show aggregation induced emission properties with red emitting fluorescence. They show absorption in the range of 501-528 and emission in the range of 547-630 nm. We evaluated photophysical properties of coumarin dyes using solvotochromism and solvent dependent shift in the emission wavelength. All the synthesized coumarin dyes COS1-COS4 are showing very good solvatochromic properties.

  20. Influence of absorption promoters on pulmonary insulin bioactivity

    OpenAIRE

    Kumar, T. Mahesh; Misra, Ambikanandan

    2003-01-01

    The purpose of this research was to enhance the bioactivity of insulin by the pulmonary route using a combination of absorption promoters. Aliquots (100 μL) containing 1.0 IU/kg to 7.0 IU/kg doses of porcine insulin solutions with different classes of absorption promoters and combinations of these at 3 concentration levels were instilled intratracheally to the anesthetized rats. Blood concentrations of glucose were measured at specific time points. Out of 3 concentration levels of each of the...