WorldWideScience

Sample records for chromodomain-containing gypsy ltr

  1. Evolutionary genomics revealed interkingdom distribution of Tcn1-like chromodomain-containing Gypsy LTR retrotransposons among fungi and plants

    Directory of Open Access Journals (Sweden)

    Blinov Alexander

    2010-04-01

    Full Text Available Abstract Background Chromodomain-containing Gypsy LTR retrotransposons or chromoviruses are widely distributed among eukaryotes and have been found in plants, fungi and vertebrates. The previous comprehensive survey of chromoviruses from mosses (Bryophyta suggested that genomes of non-seed plants contain the clade which is closely related to the retrotransposons from fungi. The origin, distribution and evolutionary history of this clade remained unclear mainly due to the absence of information concerning the diversity and distribution of LTR retrotransposons in other groups of non-seed plants as well as in fungal genomes. Results In present study we preformed in silico analysis of chromodomain-containing LTR retrotransposons in 25 diverse fungi and a number of plant species including spikemoss Selaginella moellendorffii (Lycopodiophyta coupled with an experimental survey of chromodomain-containing Gypsy LTR retrotransposons from diverse non-seed vascular plants (lycophytes, ferns, and horsetails. Our mining of Gypsy LTR retrotransposons in genomic sequences allowed identification of numerous families which have not been described previously in fungi. Two new well-supported clades, Galahad and Mordred, as well as several other previously unknown lineages of chromodomain-containing Gypsy LTR retrotransposons were described based on the results of PCR-mediated survey of LTR retrotransposon fragments from ferns, horsetails and lycophytes. It appeared that one of the clades, namely Tcn1 clade, was present in basidiomycetes and non-seed plants including mosses (Bryophyta and lycophytes (genus Selaginella. Conclusions The interkingdom distribution is not typical for chromodomain-containing LTR retrotransposons clades which are usually very specific for a particular taxonomic group. Tcn1-like LTR retrotransposons from fungi and non-seed plants demonstrated high similarity to each other which can be explained by strong selective constraints and the

  2. Evolutionary dynamics of the Ty3/gypsy LTR retrotransposons in the genome of Anopheles gambiae.

    Directory of Open Access Journals (Sweden)

    Jose Manuel C Tubio

    Full Text Available Ty3/gypsy elements represent one of the most abundant and diverse LTR-retrotransposon (LTRr groups in the Anopheles gambiae genome, but their evolutionary dynamics have not been explored in detail. Here, we conduct an in silico analysis of the distribution and abundance of the full complement of 1045 copies in the updated AgamP3 assembly. Chromosomal distribution of Ty3/gypsy elements is inversely related to arm length, with densities being greatest on the X, and greater on the short versus long arms of both autosomes. Taking into account the different heterochromatic and euchromatic compartments of the genome, our data suggest that the relative abundance of Ty3/gypsy LTRrs along each chromosome arm is determined mainly by the different proportions of heterochromatin, particularly pericentric heterochromatin, relative to total arm length. Additionally, the breakpoint regions of chromosomal inversion 2La appears to be a haven for LTRrs. These elements are underrepresented more than 7-fold in euchromatin, where 33% of the Ty3/gypsy copies are associated with genes. The euchromatin on chromosome 3R shows a faster turnover rate of Ty3/gypsy elements, characterized by a deficit of proviral sequences and the lowest average sequence divergence of any autosomal region analyzed in this study. This probably reflects a principal role of purifying selection against insertion for the preservation of longer conserved syntenyc blocks with adaptive importance located in 3R. Although some Ty3/gypsy LTRrs show evidence of recent activity, an important fraction are inactive remnants of relatively ancient insertions apparently subject to genetic drift. Consistent with these computational predictions, an analysis of the occupancy rate of putatively older insertions in natural populations suggested that the degenerate copies have been fixed across the species range in this mosquito, and also are shared with the sibling species Anopheles arabiensis.

  3. The cotton centromere contains a Ty3-gypsy-like LTR retroelement.

    Directory of Open Access Journals (Sweden)

    Song Luo

    Full Text Available The centromere is a repeat-rich structure essential for chromosome segregation; with the long-term aim of understanding centromere structure and function, we set out to identify cotton centromere sequences. To isolate centromere-associated sequences from cotton, (Gossypium hirsutum we surveyed tandem and dispersed repetitive DNA in the genus. Centromere-associated elements in other plants include tandem repeats and, in some cases, centromere-specific retroelements. Examination of cotton genomic survey sequences for tandem repeats yielded sequences that did not localize to the centromere. However, among the repetitive sequences we also identified a gypsy-like LTR retrotransposon (Centromere Retroelement Gossypium, CRG that localizes to the centromere region of all chromosomes in domestic upland cotton, Gossypium hirsutum, the major commercially grown cotton. The location of the functional centromere was confirmed by immunostaining with antiserum to the centromere-specific histone CENH3, which co-localizes with CRG hybridization on metaphase mitotic chromosomes. G. hirsutum is an allotetraploid composed of A and D genomes and CRG is also present in the centromere regions of other AD cotton species. Furthermore, FISH and genomic dot blot hybridization revealed that CRG is found in D-genome diploid cotton species, but not in A-genome diploid species, indicating that this retroelement may have invaded the A-genome centromeres during allopolyploid formation and amplified during evolutionary history. CRG is also found in other diploid Gossypium species, including B and E2 genome species, but not in the C, E1, F, and G genome species tested. Isolation of this centromere-specific retrotransposon from Gossypium provides a probe for further understanding of centromere structure, and a tool for future engineering of centromere mini-chromosomes in this important crop species.

  4. The impact of Ty3-gypsy group LTR retrotransposons Fatima on B-genome specificity of polyploid wheats

    Directory of Open Access Journals (Sweden)

    Huneau Cecile

    2011-06-01

    Full Text Available Abstract Background Transposable elements (TEs are a rapidly evolving fraction of the eukaryotic genomes and the main contributors to genome plasticity and divergence. Recently, occupation of the A- and D-genomes of allopolyploid wheat by specific TE families was demonstrated. Here, we investigated the impact of the well-represented family of gypsy LTR-retrotransposons, Fatima, on B-genome divergence of allopolyploid wheat using the fluorescent in situ hybridisation (FISH method and phylogenetic analysis. Results FISH analysis of a BAC clone (BAC_2383A24 initially screened with Spelt1 repeats demonstrated its predominant localisation to chromosomes of the B-genome and its putative diploid progenitor Aegilops speltoides in hexaploid (genomic formula, BBAADD and tetraploid (genomic formula, BBAA wheats as well as their diploid progenitors. Analysis of the complete BAC_2383A24 nucleotide sequence (113 605 bp demonstrated that it contains 55.6% TEs, 0.9% subtelomeric tandem repeats (Spelt1, and five genes. LTR retrotransposons are predominant, representing 50.7% of the total nucleotide sequence. Three elements of the gypsy LTR retrotransposon family Fatima make up 47.2% of all the LTR retrotransposons in this BAC. In situ hybridisation of the Fatima_2383A24-3 subclone suggests that individual representatives of the Fatima family contribute to the majority of the B-genome specific FISH pattern for BAC_2383A24. Phylogenetic analysis of various Fatima elements available from databases in combination with the data on their insertion dates demonstrated that the Fatima elements fall into several groups. One of these groups, containing Fatima_2383A24-3, is more specific to the B-genome and proliferated around 0.5-2.5 MYA, prior to allopolyploid wheat formation. Conclusion The B-genome specificity of the gypsy-like Fatima, as determined by FISH, is explained to a great degree by the appearance of a genome-specific element within this family for Ae

  5. LTR retrotransposons in fungi.

    Directory of Open Access Journals (Sweden)

    Anna Muszewska

    Full Text Available Transposable elements with long terminal direct repeats (LTR TEs are one of the best studied groups of mobile elements. They are ubiquitous elements present in almost all eukaryotic genomes. Their number and state of conservation can be a highlight of genome dynamics. We searched all published fungal genomes for LTR-containing retrotransposons, including both complete, functional elements and remnant copies. We identified a total of over 66,000 elements, all of which belong to the Ty1/Copia or Ty3/Gypsy superfamilies. Most of the detected Gypsy elements represent Chromoviridae, i.e. they carry a chromodomain in the pol ORF. We analyzed our data from a genome-ecology perspective, looking at the abundance of various types of LTR TEs in individual genomes and at the highest-copy element from each genome. The TE content is very variable among the analyzed genomes. Some genomes are very scarce in LTR TEs (8000 elements. The data shows that transposon expansions in fungi usually involve an increase both in the copy number of individual elements and in the number of element types. The majority of the highest-copy TEs from all genomes are Ty3/Gypsy transposons. Phylogenetic analysis of these elements suggests that TE expansions have appeared independently of each other, in distant genomes and at different taxonomical levels. We also analyzed the evolutionary relationships between protein domains encoded by the transposon pol ORF and we found that the protease is the fastest evolving domain whereas reverse transcriptase and RNase H evolve much slower and in correlation with each other.

  6. Identification and characterization of jute LTR retrotransposons:: Their abundance, heterogeneity and transcriptional activity.

    Science.gov (United States)

    Ahmed, Salim; Shafiuddin, Md; Azam, Muhammad Shafiul; Islam, Md Shahidul; Ghosh, Ajit; Khan, Haseena

    2011-05-01

    Long Terminal Repeat (LTR) retrotransposons constitute a significant part of eukaryotic genomes and play an important role in genome evolution especially in plants. Jute is an important fiber crop with a large genome of 1,250 Mbps. This genome is still mostly unexplored. In this study we aimed at identifying and characterizing the LTR retrotransposons of jute with a view to understanding the jute genome better. In this study, the Reverse Transcriptase domain of Ty1-copia and Ty3-gypsy LTR retrotransposons of jute were amplified by degenerate primers and their expressions were examined by reverse transcription PCR. Copy numbers of reverse transcriptase (RT) genes of Ty1-copia and Ty3-gypsy elements were determined by dot blot analysis. Sequence analysis revealed higher heterogeneity among Ty1-copia retrotransposons than Ty3-gypsy and clustered each of them in three groups. Copy number of RT genes in Ty1-copia was found to be higher than that of Ty3-gypsy elements from dot blot hybridization. Cumulatively Ty1-copia and Ty3-gypsy may constitute around 19% of the jute genome where two groups of Ty1-copia were found to be transcriptionally active. Since the LTR retrotransposons constitute a large portion of jute genome, these findings imply the importance of these elements in the evolution of jute genome.

  7. Network dynamics of eukaryotic LTR retroelements beyond phylogenetic trees

    Directory of Open Access Journals (Sweden)

    Bernad Lucia

    2009-11-01

    Full Text Available Abstract Background Sequencing projects have allowed diverse retroviruses and LTR retrotransposons from different eukaryotic organisms to be characterized. It is known that retroviruses and other retro-transcribing viruses evolve from LTR retrotransposons and that this whole system clusters into five families: Ty3/Gypsy, Retroviridae, Ty1/Copia, Bel/Pao and Caulimoviridae. Phylogenetic analyses usually show that these split into multiple distinct lineages but what is yet to be understood is how deep evolution occurred in this system. Results We combined phylogenetic and graph analyses to investigate the history of LTR retroelements both as a tree and as a network. We used 268 non-redundant LTR retroelements, many of them introduced for the first time in this work, to elucidate all possible LTR retroelement phylogenetic patterns. These were superimposed over the tree of eukaryotes to investigate the dynamics of the system, at distinct evolutionary times. Next, we investigated phenotypic features such as duplication and variability of amino acid motifs, and several differences in genomic ORF organization. Using this information we characterized eight reticulate evolution markers to construct phenotypic network models. Conclusion The evolutionary history of LTR retroelements can be traced as a time-evolving network that depends on phylogenetic patterns, epigenetic host-factors and phenotypic plasticity. The Ty1/Copia and the Ty3/Gypsy families represent the oldest patterns in this network that we found mimics eukaryotic macroevolution. The emergence of the Bel/Pao, Retroviridae and Caulimoviridae families in this network can be related with distinct inflations of the Ty3/Gypsy family, at distinct evolutionary times. This suggests that Ty3/Gypsy ancestors diversified much more than their Ty1/Copia counterparts, at distinct geological eras. Consistent with the principle of preferential attachment, the connectivities among phenotypic markers, taken as

  8. Evolutionary history of Oryza sativa LTR retrotransposons: a preliminary survey of the rice genome sequences

    Directory of Open Access Journals (Sweden)

    Ganko Eric W

    2004-03-01

    Full Text Available Abstract Background LTR Retrotransposons transpose through reverse transcription of an RNA intermediate and are ubiquitous components of all eukaryotic genomes thus far examined. Plant genomes, in particular, have been found to be comprised of a remarkably high number of LTR retrotransposons. There is a significant body of direct and indirect evidence that LTR retrotransposons have contributed to gene and genome evolution in plants. Results To explore the evolutionary history of long terminal repeat (LTR retrotransposons and their impact on the genome of Oryza sativa, we have extended an earlier computer-based survey to include all identifiable full-length, fragmented and solo LTR elements in the rice genome database as of April 2002. A total of 1,219 retroelement sequences were identified, including 217 full-length elements, 822 fragmented elements, and 180 solo LTRs. In order to gain insight into the chromosomal distribution of LTR-retrotransposons in the rice genome, a detailed examination of LTR-retrotransposon sequences on Chromosome 10 was carried out. An average of 22.3 LTR-retrotransposons per Mb were detected in Chromosome 10. Conclusions Gypsy-like elements were found to be >4 × more abundant than copia-like elements. Eleven of the thirty-eight investigated LTR-retrotransposon families displayed significant subfamily structure. We estimate that at least 46.5% of LTR-retrotransposons in the rice genome are older than the age of the species (

  9. LTR retrotransposon landscape in Medicago truncatula: more rapid removal than in rice

    Directory of Open Access Journals (Sweden)

    Liu Jin-Song

    2008-08-01

    Full Text Available Abstract Background Long terminal repeat retrotransposons (LTR elements are ubiquitous Eukaryotic TEs that transpose through RNA intermediates. Accounting for significant proportion of many plant genomes, LTR elements have been well established as one of the major forces underlying the evolution of plant genome size, structure and function. The accessibility of more than 40% of genomic sequences of the model legume Medicago truncatula (Mt has made the comprehensive study of its LTR elements possible. Results We use a newly developed tool LTR_FINDER to identify LTR retrotransposons in the Mt genome and detect 526 full-length elements as well as a great number of copies related to them. These elements constitute about 9.6% of currently available genomic sequences. They are classified into 85 families of which 64 are reported for the first time. The majority of the LTR retrotransposons belong to either Copia or Gypsy superfamily and the others are categorized as TRIMs or LARDs by their length. We find that the copy-number of Copia-like families is 3 times more than that of Gypsy-like ones but the latter contribute more to the genome. The analysis of PBS and protein-coding domain structure of the LTR families reveals that they tend to use only 4–5 types of tRNAs and many families have quite conservative ORFs besides known TE domains. For several important families, we describe in detail their abundance, conservation, insertion time and structure. We investigate the amplification-deletion pattern of the elements and find that the detectable full-length elements are relatively young and most of them were inserted within the last 0.52 MY. We also estimate that more than ten million bp of the Mt genomic sequences have been removed by the deletion of LTR elements and the removal of the full-length structures in Mt has been more rapid than in rice. Conclusion This report is the first comprehensive description and analysis of LTR retrotransposons in the

  10. The Gypsy Database (GyDB) of mobile genetic elements: release 2.0.

    Science.gov (United States)

    Llorens, Carlos; Futami, Ricardo; Covelli, Laura; Domínguez-Escribá, Laura; Viu, Jose M; Tamarit, Daniel; Aguilar-Rodríguez, Jose; Vicente-Ripolles, Miguel; Fuster, Gonzalo; Bernet, Guillermo P; Maumus, Florian; Munoz-Pomer, Alfonso; Sempere, Jose M; Latorre, Amparo; Moya, Andres

    2011-01-01

    This article introduces the second release of the Gypsy Database of Mobile Genetic Elements (GyDB 2.0): a research project devoted to the evolutionary dynamics of viruses and transposable elements based on their phylogenetic classification (per lineage and protein domain). The Gypsy Database (GyDB) is a long-term project that is continuously progressing, and that owing to the high molecular diversity of mobile elements requires to be completed in several stages. GyDB 2.0 has been powered with a wiki to allow other researchers participate in the project. The current database stage and scope are long terminal repeats (LTR) retroelements and relatives. GyDB 2.0 is an update based on the analysis of Ty3/Gypsy, Retroviridae, Ty1/Copia and Bel/Pao LTR retroelements and the Caulimoviridae pararetroviruses of plants. Among other features, in terms of the aforementioned topics, this update adds: (i) a variety of descriptions and reviews distributed in multiple web pages; (ii) protein-based phylogenies, where phylogenetic levels are assigned to distinct classified elements; (iii) a collection of multiple alignments, lineage-specific hidden Markov models and consensus sequences, called GyDB collection; (iv) updated RefSeq databases and BLAST and HMM servers to facilitate sequence characterization of new LTR retroelement and caulimovirus queries; and (v) a bibliographic server. GyDB 2.0 is available at http://gydb.org.

  11. Analysis of plant LTR-retrotransposons at the fine-scale family level reveals individual molecular patterns

    Directory of Open Access Journals (Sweden)

    Domingues Douglas S

    2012-04-01

    Full Text Available Abstract Background Sugarcane is an important crop worldwide for sugar production and increasingly, as a renewable energy source. Modern cultivars have polyploid, large complex genomes, with highly unequal contributions from ancestral genomes. Long Terminal Repeat retrotransposons (LTR-RTs are the single largest components of most plant genomes and can substantially impact the genome in many ways. It is therefore crucial to understand their contribution to the genome and transcriptome, however a detailed study of LTR-RTs in sugarcane has not been previously carried out. Results Sixty complete LTR-RT elements were classified into 35 families within four Copia and three Gypsy lineages. Structurally, within lineages elements were similar, between lineages there were large size differences. FISH analysis resulted in the expected pattern of Gypsy/heterochromatin, Copia/euchromatin, but in two lineages there was localized clustering on some chromosomes. Analysis of related ESTs and RT-PCR showed transcriptional variation between tissues and families. Four distinct patterns were observed in sRNA mapping, the most unusual of which was that of Ale1, with very large numbers of 24nt sRNAs in the coding region. The results presented support the conclusion that distinct small RNA-regulated pathways in sugarcane target the lineages of LTR-RT elements. Conclusions Individual LTR-RT sugarcane families have distinct structures, and transcriptional and regulatory signatures. Our results indicate that in sugarcane individual LTR-RT families have distinct behaviors and can potentially impact the genome in diverse ways. For instance, these transposable elements may affect nearby genes by generating a diverse set of small RNA's that trigger gene silencing mechanisms. There is also some evidence that ancestral genomes contribute significantly different element numbers from particular LTR-RT lineages to the modern sugarcane cultivar genome.

  12. LTR retrotransposons contribute to genomic gigantism in plethodontid salamanders.

    Science.gov (United States)

    Sun, Cheng; Shepard, Donald B; Chong, Rebecca A; López Arriaza, José; Hall, Kathryn; Castoe, Todd A; Feschotte, Cédric; Pollock, David D; Mueller, Rachel Lockridge

    2012-01-01

    Among vertebrates, most of the largest genomes are found within the salamanders, a clade of amphibians that includes 613 species. Salamander genome sizes range from ~14 to ~120 Gb. Because genome size is correlated with nucleus and cell sizes, as well as other traits, morphological evolution in salamanders has been profoundly affected by genomic gigantism. However, the molecular mechanisms driving genomic expansion in this clade remain largely unknown. Here, we present the first comparative analysis of transposable element (TE) content in salamanders. Using high-throughput sequencing, we generated genomic shotgun data for six species from the Plethodontidae, the largest family of salamanders. We then developed a pipeline to mine TE sequences from shotgun data in taxa with limited genomic resources, such as salamanders. Our summaries of overall TE abundance and diversity for each species demonstrate that TEs make up a substantial portion of salamander genomes, and that all of the major known types of TEs are represented in salamanders. The most abundant TE superfamilies found in the genomes of our six focal species are similar, despite substantial variation in genome size. However, our results demonstrate a major difference between salamanders and other vertebrates: salamander genomes contain much larger amounts of long terminal repeat (LTR) retrotransposons, primarily Ty3/gypsy elements. Thus, the extreme increase in genome size that occurred in salamanders was likely accompanied by a shift in TE landscape. These results suggest that increased proliferation of LTR retrotransposons was a major molecular mechanism contributing to genomic expansion in salamanders.

  13. Precise excision of the retrotransposon gypsy from the forked and cut loci in a genetically unstable D. melanogaster strain.

    Science.gov (United States)

    Kuzin, A B; Lyubomirskaya, N V; Khudaibergenova, B M; Ilyin, Y V; Kim, A I

    1994-11-11

    The genetically unstable Mutator Strain of D. melanogaster is characterised by a high frequency of spontaneous mutations and their reversions. Three forked mutants were obtained independently and several reversions arose spontaneously with frequency of 10(-3)-10(-4). The sites of integration and excision of the gypsy retrotransposon were analysed by Southern blot analysis and sequencing of PCR fragments. In all cases gypsy had inserted at the end of the third exon of the major transcript of the forked gene, causing the duplication of TCCA target sequence. All the reversions resulted from precise excision of the gypsy. A double mutant containing ct6 and f1, caused by gypsy insertions into untranslated regions of the corresponding genes, was constructed. Two spontaneous ct6f+ revertants as well as one ct+f1 revertant were obtained from this line. Sequence analysis of gypsy integration and excision sites revealed that in all cases gypsy excision was also precise. These experiments constitute the first demonstration of precise excision of LTR-containing elements from their host genomes.

  14. Historical Gypsy Moth Defoliation Frequency

    Data.gov (United States)

    U.S. Environmental Protection Agency — Gypsy moth populations may exist for many years at low densities such that it may be difficult to find any life stages. Then, for reasons that are not completely...

  15. Genome-wide Characterization of Long Terminal Repeat-retrotransposons in Apple Reveals the Differences in Heterogeneity and Copy Number between Ty1-copia and Ty3-gypsy Retrotransposons

    Institute of Scientific and Technical Information of China (English)

    Hai-Yue Sun; Hong-Yan Dai; Gui-Ling Zhao; Yue Ma; Chun-Qing Ou; He Li; Lin-Guang Li; Zhi-Hong Zhang

    2008-01-01

    The conserved domains of reverse transcriptase (RT) genes of Ty1-copia and Ty3-gypsy groups of long terminal repeat (LTR) retrotransposons were isolated from the Malus domestica genome using degenerate oligonucleotide primers.Sequence analysis showed that 45% of Ty1-copia and 63% of Ty3-gypsy RT sequences contained premature stop codons and/or indels disrupting the reading frame.High heterogeneity among RT sequences of both Tyl-copia and Ty3-gypsy group retrotransposons was observed,but Ty3-gypsy group retrotransposons in the apple genome are less heterogeneous than Ty1-copia elements.Retrotransposon copy number was estimated by dot blot hybridizations for Ty1-copia (~500O) and Ty3-gypsy ( ~26000).All elements of the two types of LTR retrotransposons comprise approximately 38% of the M.domestica genome,with the Ty3-gypsy group contribution being higher (33.5%) than the Ty1-copia one (4.6%).Transcription was not detected by reverse transcription-polymerase chain reaction for either Tyl.copia or Ty3-gypsy retrotransposons in the leaves of plants in vitro or in leaf explants cultured on medium supplemented with high concentration benzylaminopurine.This research reveals the differences in heterogeneity and copy number between Ty1-copia and Ty3-gypsy retrotransposons in the apple genome.Ty1-copia retrotransposon has higher heterogeneity than Ty3-gypsy retrotransposon,but the latter has a higher copy number,which implies that Ty3-gypsy retrotransposons may play a more important role in the apple genome evolution.

  16. LTR design of proportional-integral observers

    DEFF Research Database (Denmark)

    Niemann, Hans Henrik; Stoustrup, Jakob; Shafai, B.;

    1995-01-01

    This paper applies the proportional-integral (PI) observer in connection with loop transfer recovery (LTR) design for continuous-time systems. We show that a PI observer makes it possible to obtain time recovery, i.e., exact recovery for t -+ -, under mild conditions. Based on an extension...... of the LQG/LTR method of proportional (P) observers, a systematic LTR design method is derived for the PI observer. Our recovery design method allows time recovery and frequency (normal) recovery to be done independently. Furthermore, we give explicit expressions for the recovery error when asymptotic...

  17. "Gypsy" on asjatundjad elust maha kirjutanud

    Index Scriptorium Estoniae

    2001-01-01

    2. dets. esietendub Vanemuises Ameerika vodevillistaari ja striptiisikuninganna Rose Louise Hovicki memuaaridel põhinev muusikal "Gypsy", lavastaja Mare Tommingas, osades Silvi Vrait ja Helena Merzin

  18. Homoerotic Sensibility in Gypsy Ballads

    Directory of Open Access Journals (Sweden)

    Luis Antonio de Villena

    2011-10-01

    Full Text Available This paper defends that Federico García Lorca’s Gypsy Ballads, far from being a neo-popular work that sings of the Andalusian region; it is a hymn to absolute sex. Gypsy Ballads means open and free exaltation of sexuality, which is expressed through praise and description of masculine positiveness, and through the different faces of virile and macho essence. This paper deals with the elements that ballad after ballad show the predominance of masculine nature, which is extolled by the poet as a choice of his sexual interest. Without making an allusion to biography, Lorca’s homoerotism is stated this way in the very poetic text.

  19. Gypsy stories: Narrative as a teaching stratagem

    Directory of Open Access Journals (Sweden)

    Čvorović Jelena

    2010-01-01

    Full Text Available This paper discusses the performance of narratives as adaptive cultural beha­viors among Gypsies in Mačva county, western Serbia. Storytelling is a universal activity and may well be oldest of the arts. It has always provided a vehicle for the expression of ideas, particularly in societies relying on oral tradition. Gypsies are present in Serbia since the Middle Ages, living within a larger Serbian culture as a minority group. Mačva, an agriculturally rich county in western Serbia, is a place where local Gypsy traditions are still alive and which help distinguish between Gypsy subgroups and the larger Serbian society. The stories analyzed are part of a collec­tion made from several different Gypsy groups exhibiting varying degrees of influence from Serbian culture. Gypsies in Serbia have no written literature, but possess a rich and varied storytelling tradition delivered by word of mouth through the generations. Their stories bear testimony to the evolutionarily important mecha­nisms employed by Gypsies to make their way in the world. Gypsy stories concern many aspects of the relationship between themselves and other social groups, both in the past and the present. At the same time, the stories deal with universal adaptive problems, such as origin/ethnicity, kinship and mate acquisition. By applying the concepts and folk knowledge from their own culture, Gypsies have managed to provide for themselves the guidelines to overcome these problems within a par­ticular environment. Thus it is that these stories reflect both human universals and cultural peculiarities - by utilization of localized cultural solutions to adaptive problems. The success Gypsies have achieved in surviving harassment, and their ability to sustain themselves and their cultures despite social rejection can be attributed, in part, to the power of the traditional stories to influence the behavior of those who hear them. For the Gypsies, telling and listening to the stories

  20. Diversity of LTR-retrotransposons and Enhancer/Suppressor Mutator-like transposons in cassava (Manihot esculenta Crantz).

    Science.gov (United States)

    Gbadegesin, Michael A; Wills, Matthew A; Beeching, John R

    2008-10-01

    Cassava (Manihot esculenta Crantz), though a major world crop with enormous potential, is very under studied. Little is known about its genome structure and organisation. Transposable elements have a key role in the evolution of genome structure, and can be used as important tools in applied genetics. This paper sets out to survey the diversity of members of three major classes of transposable element within the cassava genome and in relation to similar elements in other plants. Members of two classes of LTR-retrotransposons, Ty1/copia-like and Ty3/gypsy-like, and of Enhancer/Suppressor Mutator (En/Spm)-like transposons were isolated and characterised. Analyses revealed 59 families of Ty1/copia, 26 families of Ty3/gypsy retrotransposons, and 40 families of En/Spm in the cassava genome. In the comparative analyses, the predicted amino acid sequences for these transposon classes were compared with those of related elements from other plant species. These revealed that there were multiple lineages of Ty1/copia-like retrotransposons in the genome of cassava and suggested that vertical and horizontal transmission as the source of cassava Mecops may not be mutually exclusive. For the Ty3/gypsy elements network, two groups of cassava Megyps were evident including the Arabidopsis Athila lineage. However, cassava En/Spm-like elements (Meens) constituted a single group within a network of plant En/Spm-like elements. Hybridisation analysis supported the presence of transposons in the genome of cassava in medium (Ty3/gypsy and En/Spm) to high (Ty1/copia) copy numbers. Thus the cassava genome was shown to contain diverse members of three major classes of transposable element; however, the different classes exhibited contrasting evolutionary histories.

  1. Higher prevalence of type 2 diabetes, metabolic syndrome and cardiovascular diseases in gypsies than in non-gypsies in Slovakia

    DEFF Research Database (Denmark)

    de Courten, Barbora; de Courten, Maximilian; Hanson, Robert L

    2003-01-01

    Gypsies (or Roma) recently experienced a transition from a traditional to a Westernized lifestyle. Although mortality in this population is 4-fold higher compared with non-Gypsies, very limited information is available on their morbidity especially with regard to non-communicable diseases. Our ai...... was to determine the prevalence of type 2 diabetes mellitus (T2DM), metabolic syndrome and cardiovascular diseases in Gypsies and non-Gypsies living in the same region of southern Slovakia....

  2. Voices in the "Gypsy Developmental Project"

    Science.gov (United States)

    Lalueza, Jose Luis; Crespo, Isabel

    2009-01-01

    The starting point for this article is, What are the hegemonic models of man and woman that educational practices are orientated toward in gypsy communities (models that are often in conflict with mainstream schooling institution's models of socialization)? We do not find the collectivism/individualism approach for explaining socialization in…

  3. Genome-wide Identification and Evolutionary Analysis of LTR-retrotrans-posons in Potato%马铃薯(Solanum tuberosum L.)全基因组水平上LTR-逆转座子的鉴定与进化分析

    Institute of Scientific and Technical Information of China (English)

    许莹修; 杜建厂

    2013-01-01

    LTR-逆转座子是构成基因组特别是植物基因组的重要组分。它们在寄主基因组的进化过程中起到重要作用。马铃薯是重要的经济作物和粮食作物,其全基因组序列的公布为进一步研究其遗传组成和演化提供了基础。本文以马铃薯全基因组序列为材料,用结构分析和同源比对的方法分离得到9318个完整的LTR-逆转座子,7281个非完整(truncated) LTR-逆转座子元件和3657个solo LTR元件。进一步研究表明, gypsy类转座子在距今两百万年(million years ago, MYA)时转座活性被抑制,而copia类元件活跃至今。马铃薯和番茄比较基因组学的研究表明,LTR-逆转座子序列变异率为18.73%,远高于基因序列的7.37%和CDS序列的5.01%。%LTR-retrotransposons are important components in plant genomes. They play key roles in the evolution of plant genomes and provide valuable information for analyzing evolution and species diversity. Potato is an impor-tant industrial crop and food crop. Whole genome sequencing of potato provides huge DNA information for genetic and genomic studies. Here we identified 9 318 intact LTR-retrotransposons, 7281 truncated elements and 3 657 solo LTR elements in the potato genome using structure-based and homologous search approaches. Analysis of gypsy elements insertion time indicates their transpositions were suppressed at about 2 million years ago (MYA), while copia elements has been active since then. Comparison between potato and tomato genome sequences suggests LTR-retrotransposons has a much higher substitution rate (18.73%) than that of gene sequence (7.37%) and CDS (5.01%).

  4. Cloning and Characterization of Ty3/gypsy Retrotransposon in Chilo suppressalis (Lepidoptera:Pyralidae)%二化螟 Ty3/gypsy 反转座子的克隆与序列分析

    Institute of Scientific and Technical Information of China (English)

    李晓欢; 罗光华; 张志春; 刘宝生; 方继朝

    2014-01-01

    Transposable elements constitute a substantial fraction of host genomes.Ty3/gypsy retrotransposon,one group of LTR retrotransposons,is widespread in different species.By inverse-PCR and genome walking,a novel member of Ty3/gypsy retrotransposons was cloned from Chilo suppressalis .This new member of Ty3/gypsy retrotransposons was named Csu-Ty3 (GenBank accession No.KJ1 9 126 1 ).The sequence is 4 934 bp in length and integrated into the “AACGT”target site duplications (TSDs)of the genome.There is a pair of non-completely identical long terminal repeats (LTRs)in the Csu-Ty3 retrotransposon.The 5′LTR is 1 6 1 bp in length and the 3′LTR is 1 68 bp,sharing 93•5 % similarities.A polypurine tract (PPT),1 5 bp in length,is adjacent to the 3′LTR.There are three independent open reading frames (ORFs)in Csu-Ty3.The first ORF encodes a protein which is related to viral structural protein,termed GAG.The second encodes aspartic protease (AP).The third encodes a polyprotein including a reverse transcriptase (RT)which produces a cDNA copy of the transposon′s RNA,an RNase H (RH)which splits the DNA-RNA hybrid and an integrase (IN ) which inserts the cDNA into the host′s genome.The southern hybridization indicated that there were many Csu-Ty3 copies in different C .suppressalis populations.Flanking PCR results showed that the Csu-Ty3 copy was inserted at the same locus in different populations.At this locus,all the individuals have the Csu-Ty3 copy insertion except some individuals from Deyang and Jiangjin populations.The Csu-Ty3 insertion ratio varied with field populations.%转座子是宿主基因组的重要组成部分.Ty3/gypsy 反转座子是广泛存在于生物体内的一类反转座子.通过反向PCR(inverse PCR)和基因组步移方法成功地从二化螟体内获得一个具有完整结构的 Ty3/gypsy 反转座子拷贝,命名为Csu-Ty3(GenBank 登录号:KJ191261).该反转座子拷贝全长4934 bp,在基因组上插入的靶位点(target sit

  5. Comparative analysis of pepper and tomato reveals euchromatin expansion of pepper genome caused by differential accumulation of Ty3/Gypsy-like elements

    Directory of Open Access Journals (Sweden)

    Ahn Jong Hwa

    2011-01-01

    Full Text Available Abstract Background Among the Solanaceae plants, the pepper genome is three times larger than that of tomato. Although the gene repertoire and gene order of both species are well conserved, the cause of the genome-size difference is not known. To determine the causes for the expansion of pepper euchromatic regions, we compared the pepper genome to that of tomato. Results For sequence-level analysis, we generated 35.6 Mb of pepper genomic sequences from euchromatin enriched 1,245 pepper BAC clones. The comparative analysis of orthologous gene-rich regions between both species revealed insertion of transposons exclusively in the pepper sequences, maintaining the gene order and content. The most common type of the transposon found was the LTR retrotransposon. Phylogenetic comparison of the LTR retrotransposons revealed that two groups of Ty3/Gypsy-like elements (Tat and Athila were overly accumulated in the pepper genome. The FISH analysis of the pepper Tat elements showed a random distribution in heterochromatic and euchromatic regions, whereas the tomato Tat elements showed heterochromatin-preferential accumulation. Conclusions Compared to tomato pepper euchromatin doubled its size by differential accumulation of a specific group of Ty3/Gypsy-like elements. Our results could provide an insight on the mechanism of genome evolution in the Solanaceae family.

  6. Gypsy Field project in reservoir characterization

    Energy Technology Data Exchange (ETDEWEB)

    Castagna, John P.; Jr., O' Meara, Daniel J.

    2000-01-12

    The overall objective of this project was to use extensive Gypsy Field Laboratory and data as a focus for developing and testing reservoir characterization methods that are targeted at improved recovery of conventional oil. This report describes progress since project report DOE/BC/14970-7 and covers the period June 1997-September 1998 and represents one year of funding originally allocated for the year 1996. During the course of the work previously performed, high resolution geophysical and outcrop data revealed the importance of fractures at the Gypsy site. In addition, personnel changes and alternative funding (OCAST and oil company support of various kinds) allowed the authors to leverage DOE contributions and focus more on geophysical characterization.

  7. An application of LTR design in fault detection

    DEFF Research Database (Denmark)

    Niemann, Hans Henrik

    1998-01-01

    as a standard Loop Transfer Recovery (LTR) design problem. As a consequence of the connection between LTR and FDI design, it is shown in an example how the LQG/LTR design method for full order and a proportional-integral observer can be applied with advantages in connection with FDI.......The fault detection and isolation (FDI) problem is considered in this paper. The FDI problem is formulated as a filter design problem, where the faults in the system is estimated and the disturbance acting on the system is rejected. It turns out that the filter design problem can be considered...

  8. A parametric LTR solution for discrete-time systems

    DEFF Research Database (Denmark)

    Niemann, Hans Henrik; Jannerup, Ole Erik

    1989-01-01

    and the full loop transfer function, is manipulated into a general form involving the target loop transfer matrix and the fundamental recovery matrix. A parametric LTR solution based on the recovery matrix is developed. It is shown that the LQR/LTR (linear quadratic Gaussian/loop transfer recovery) solution......A parametric LTR (loop transfer recovery) solution for discrete-time compensators incorporating filtering observers which achieve exact recovery is presented for both minimum- and non-minimum-phase systems. First the recovery error, which defines the difference between the target loop transfer...

  9. Don't Squash That Gypsy Moth . . . Yet!

    Science.gov (United States)

    Hershkowitz, Gerald

    1979-01-01

    Although the gypsy moth defoliates over 2 million trees annually, it can serve as an extremely valuable tool for promoting environmental awareness. The gypsy moth can illustrate insect life cycles, sexual dimorphism, scent attraction, many stimulus response experiments, evolution, natural controls, and pesticide uses and dangers. (SB)

  10. Gypsy Phenylketonuria: A point mutation of the phenylalanine hydroxylase gene in Gypsy families from Slovakia

    Energy Technology Data Exchange (ETDEWEB)

    Kalanin, J. [Institute for Clinical and Experical Medicine, Praha (Czechoslovakia); Takarada, Y. [Toyobo Research Center, Shiga (Japan); Kagawa, S.; Yamashita, K.; Ohtsuka, N.; Matsuoka, A. [Hyogo College of Medicine, Nishinomiya (Japan)

    1994-01-15

    A direct mutational analysis of the phenylalanine hydroxylase gene (PAH) in Gypsy families with phenylketonuria (PKU) has not yet been presented. However, they obviously represent a group at high risk for this inherited disease. The authors analyzed the PAH loci of 65 Gypsies originating from Eastern Slovakia by a combination of PCR amplification, direct sequencing and ASO hybridization. These studies uncovered 10 {open_quotes}classical PKU{close_quotes} patients to be homozygous for a R252W (CGG-TGG) transition, and 29 heterozygous carriers of this mutation. Fifteen control Caucasoid PKU patients from the Czech and Slovak Republics were selected. In this group they detected R252W mutation in two subjects (6.67% of all mutant alleles). Both were compound heterozygous for two different mutations. Previous haplotype studies of Welsh Gypsies with PKU were uninformative in the determination of heterozygosity. ASO hybridization served effectively for the consequent analyses in Gypsy PKU-related families and to identify the carriers among the unrelated subjects. 19 refs., 2 figs.

  11. Gypsy Field Project in Reservoir Characterization

    Energy Technology Data Exchange (ETDEWEB)

    John P. Castagna; William J. Lamb; Carlos Moreno; Roger Young; Lynn Soreghan

    2000-09-19

    The objective of the Gypsy Project was to properly calculate seismic attributes and integrate these into a reservoir characterization project. Significant progress was made on the project in four areas. (1) Attenuation: In order for seismic inversion for rock properties or calculation of seismic attributes used to estimate rock properties to be performed validly, it is necessary to deal with seismic data that has had true amplitude and frequency content restored to account for earth filtering effects that are generally not included in seismic reservoir characterization methodologies. This requires the accurate measurement of seismic attenuation, something that is rarely achieved in practice. It is hoped that such measurements may also provide additional independent seismic attributes for use in reservoir characterization studies. In 2000, we were concerned with the ground truthing of attenuation measurements in the vicinity of wells. Our approach to the problem is one of extracting as time varying wavelet and relating temporal variations in the wavelet to an attenuation model of the earth. This method has the advantage of correcting for temporal variations in the reflectivity spectrum of the earth which confound the spectral ratio methodology which is the most commonly applied means of measuring attenuation from surface seismic data. Part I of the report describes our efforts in seismic attenuation as applied to the Gypsy data. (2) Optimal Attributes: A bewildering array of seismic attributes is available to the reservoir geoscientist to try to establish correlations to rock properties. Ultimately, the use of such a large number of degrees of freedom in the search for correlations with limited well control leads to common misapplication of statistically insignificant results which yields invalid predictions. Cross-validation against unused wells can be used to recognize such problems, but does not offer a solution to the question of which attributes should be used

  12. The Turkish gypsies in terms of sociological perspective: a study on gypsies in Izmir

    Directory of Open Access Journals (Sweden)

    Suat Kolukırık

    2006-08-01

    Full Text Available This study intending to examine the general representations and socio-economic characteristics of the Gypsies includes the outcomes of the field study carried out among the Gypsies of Tarlabaşı district in Bornova, İzmir. Within the scope of the study, social and economic situation has been charted by applying questionnaire technique, and the data concerning demographic characteristics, birth place, migration, marital status, number of family members, education, household and space, work and job, income and expenses, furniture and goods used in the house, political participation, organization, and Gypsies’ points of view towards themselves and the world have been obtained and evaluated. A depth interview and oral history techniques have been applied in the interpretation and analysis of the data obtained from questionnaire techniques.

  13. "Gypsy" ehk killuke Ameerikat meie jaoks / Martin Gorris

    Index Scriptorium Estoniae

    Gorris, Martin

    2001-01-01

    2. dets. esietendus Vanemuises Ameerika vodevillistaari ja striptiisikuninganna Rose Louise Hovicki memuaaridel põhinev Jule Styne'i muusikal "Gypsy", lavastaja Mare Tommingas, osades Silvi Vrait ja Helena Merzin

  14. Gypsy pentecostal ascetism and body management

    Directory of Open Access Journals (Sweden)

    Mena Cabezas, Ignacio Ramón

    2008-05-01

    Full Text Available Pentecostal religious beliefs and practices consist of a complex set of strategies of transformation and personal renewal. Among other aspects of their experiences in the Church of Philadelphia, the social construction of Gypsy reality turns on the reform of the body. The present paper lies on aspects such as the body as object and subject of biopolitical and religious practices; the relationships between religious experience and body management; new social and community interactions; and autobiographical discourse as the ideological vehicle of personal conversion and transformation. All these processes reveal how social practices remake and shape bodily behaviour and its meaning. Pentecostal charismatic practices channel and express the community and individual demands of Church of Philadelphia converts, and represent central issues in the Pentecostal management of body and spirit. Our aim in this paper is to analyze the bodily practices which provide for believers´ transformation, and which shape community rituals and the congregation's interactions.

  15. Central Asian Gypsies: identities and migrations

    Directory of Open Access Journals (Sweden)

    Elena Marushiakova

    2015-12-01

    Full Text Available Central Asian Gypsies: identities and migrations During recent years the topic of Gypsy/Roma migration and identities became burning topic of pan-EUropean public discourse. Much less attention is paid to the Gypsy migrations outside the borders of European Union. The present article has ambitious goal to fulfill this gap and to present contemporary Gypsy migrations in Post-soviet Central Asian in order to see how this “burning” topic looks outside European space. After breakdown of Soviet Union and establishing of new independent republics in Central Asia and in connection to economical difficulties, wars and social unrest, in order to make their living, the communities of Central Asian ‘Gypsies’ revitalised their former nomadic traditions and migrate towards Russian Federation and in frames of Central Asia towards Kazakhstan. There they are earning their living through begging and sporadic work in construction and scrap collection. A central point of this article is the impact of these contemporary migrations on the development of identities and well being of Central Asian ‘Gypsies’. The multilevel, hierarchically structured identities of Central-Asian ‘Gypsies' are analysed as demonstrated in different historical contexts – as former “Soviet people”, member of former ruling class of agricultural proletariat, and as declassed community today; as Central-Asian ‘Gypsies’ or as citizens of respective Central Asian Republics during migrations in Russian Federation in front of Russian majority society and in front of Roma; and in context of the Central Asian region during the migrations to Kazakhstan and in their home countries.     Cyganie środkowoazjatyccy – tożsamości i migracje W ostatnich latach tematyka migracji i tożsamości Cyganów (Romów stała się tematem palącym w unijnoeuropejskim dyskursie publicznym. O wiele mniej uwagi poświęca się w nim migracjom Cyganów, które mają miejsce poza granicami

  16. Distribution and conservation of the transposable element gypsy in drosophilid species

    Directory of Open Access Journals (Sweden)

    Fabiana Herédia

    2007-01-01

    Full Text Available In an attempt to understand the dynamics of transposable elements (T'S in the genome of host species, we investigated the distribution, representativeness and conservation of DNA sequences homologous to the Drosophila melanogaster gypsy retrotransposon in 42 drosophilid species. Our results extended the knowledge about the wide distribution of gypsy in the genus Drosophila, including several Neotropical species not previously studied. The gypsy-like sequences showed high divergence compared to the D. melanogaster gypsy element. Furthermore, the conservation of the restriction sites between gypsy sequences from phylogenetically unrelated species pointed to a more complex evolutionary picture, which includes the possibility of the horizontal transfer events already described for this retrotransposon.

  17. Origins and divergence of the Roma (gypsies).

    Science.gov (United States)

    Gresham, D; Morar, B; Underhill, P A; Passarino, G; Lin, A A; Wise, C; Angelicheva, D; Calafell, F; Oefner, P J; Shen, P; Tournev, I; de Pablo, R; Kuĉinskas, V; Perez-Lezaun, A; Marushiakova, E; Popov, V; Kalaydjieva, L

    2001-12-01

    The identification of a growing number of novel Mendelian disorders and private mutations in the Roma (Gypsies) points to their unique genetic heritage. Linguistic evidence suggests that they are of diverse Indian origins. Their social structure within Europe resembles that of the jatis of India, where the endogamous group, often defined by profession, is the primary unit. Genetic studies have reported dramatic differences in the frequencies of mutations and neutral polymorphisms in different Romani populations. However, these studies have not resolved ambiguities regarding the origins and relatedness of Romani populations. In this study, we examine the genetic structure of 14 well-defined Romani populations. Y-chromosome and mtDNA markers of different mutability were analyzed in a total of 275 individuals. Asian Y-chromosome haplogroup VI-68, defined by a mutation at the M82 locus, was present in all 14 populations and accounted for 44.8% of Romani Y chromosomes. Asian mtDNA-haplogroup M was also identified in all Romani populations and accounted for 26.5% of female lineages in the sample. Limited diversity within these two haplogroups, measured by the variation at eight short-tandem-repeat loci for the Y chromosome, and sequencing of the HVS1 for the mtDNA are consistent with a small group of founders splitting from a single ethnic population in the Indian subcontinent. Principal-components analysis and analysis of molecular variance indicate that genetic structure in extant endogamous Romani populations has been shaped by genetic drift and differential admixture and correlates with the migrational history of the Roma in Europe. By contrast, social organization and professional group divisions appear to be the product of a more recent restitution of the caste system of India.

  18. Large-scale transcriptome data reveals transcriptional activity of fission yeast LTR retrotransposons

    DEFF Research Database (Denmark)

    Mourier, Tobias; Willerslev, Eske

    2010-01-01

    transcriptional activity from Long Terminal Repeat (LTR) retrotransposons. LTR retrotransposons are normally flanked by two LTR sequences. However, the majority of LTR sequences in S. pombe exist as solitary LTRs, i.e. as single terminal repeat sequences not flanking a retrotransposon. Transcriptional activity...... of transcriptional activity are observed from both strands of solitary LTR sequences. Transcriptome data collected during meiosis suggests that transcription of solitary LTRs is correlated with the transcription of nearby protein-coding genes. CONCLUSIONS: Presumably, the host organism negatively regulates...... proliferation of LTR retrotransposons. The finding of considerable transcriptional activity of retrotransposons suggests that part of this regulation is likely to take place at a posttranscriptional level. Alternatively, the transcriptional activity may signify a hitherto unrecognized activity level...

  19. Accurate episomal HIV 2-LTR circles quantification using optimized DNA isolation and droplet digital PCR

    OpenAIRE

    Eva Malatinkova; Maja Kiselinova; Pawel Bonczkowski; Wim Trypsteen; Peter Messiaen; Jolien Vermeire; Bruno Verhasselt; Karen Vervisch; Linos Vandekerckhove; Ward De Spiegelaere

    2014-01-01

    Introduction: In HIV-infected patients on combination antiretroviral therapy (cART), the detection of episomal HIV 2-LTR circles is a potential marker for ongoing viral replication. Quantification of 2-LTR circles is based on quantitative PCR or more recently on digital PCR assessment, but is hampered due to its low abundance. Sample pre-PCR processing is a critical step for 2-LTR circles quantification, which has not yet been sufficiently evaluated in patient derived samples. Materials and M...

  20. Response of rice gypsy retrotransposons to different stress conditions%水稻gypsy类逆转座子对不同胁迫条件的响应

    Institute of Scientific and Technical Information of China (English)

    徐玲; 杨静; 刘林; 李成云

    2012-01-01

    LTR retrotransposons are the largest and most widely distributed transposable elements in rice, of which Ty3-gypsy class are more numerous. Using degenerate primers based on conserved region of reverse transcriptase gene in Ty3-gypsy retrotransposons, transcript fragments were amplified by RT-PCR and sequenced respectively from cDNAs of rice variety Acuche treated by 5 different stresses (M oryza, SA, 2,4-D, high-salt and tissue culture) to analyze the characteristics of Ty3-gypsy retrotransposons activated by different stresses. The results showed that all the 5 different stresses could activate Tyl-gypsy retrotransposon; amino acid sequences of reverse transcriptase of retrotransposons responding to different stresses were highly conserved and distributed crossly, only few of them showed specificity of stress response, suggesting that many Ty3-gy/wy retrotransposons could respond to different stresses.%LTR类逆转座子是水稻基因组中数量最多、分布最广的转座元件,其中Ty3-ypsy类所占比例较大.根据Ty3-gypsy类逆转座子逆转录酶的保守区域,采用简并引物,通过RT-PCR,对5种胁迫处理(稻瘟菌、水杨酸、2,4-D、高盐及组织培养)后的云南地方水稻品种月亮谷的cDNA进行扩增,并测序获得了一批转录片段,分析不同胁迫条件诱导激活的Ty3-ypsy类逆转座子的特点.结果表明:5种胁迫处理都能诱导月亮谷中Ty3-gypsy类逆转座子的表达;对不同胁迫响应的逆转座子序列大部分同源性较高,且呈交叉分布,仅有少部分具有胁迫响应的特异性,说明很多Ty3-gypsy类逆转座子能对不同胁迫进行响应.

  1. Gypsies and Travellers: their history, culture and traditions.

    Science.gov (United States)

    Lally, Sheila

    2015-01-01

    Gypsies and Travellers living in Britain today are culturally diverse and made up of differing groups. The aim of this paper is to describe the different groups and sub-groups, and look at similarities and differences between these groups while highlighting the discrimination and prejudice experienced by the Travelling community as a whole. Although there is no one culture common to all these groups, they share an ancient tradition of 'nomadism' and an oral tradition of passing on knowledge. Gypsies and Irish Travellers are recognised as ethnic minorities under the Equality Act 2010 and it is estimated that there are between 200,000 and 300,000 living in the UK. This paper offers an account of how a specialist health visitor working in the south Gloucestershire area has attempted to reduce prejudice and discrimination experienced by Gypsies and Travellers by raising awareness of their cultural issues. It will also focus on how to ensure services take into account the needs of Gypsies and Travellers.

  2. Juvenile marriages, child-brides and infant mortality among Serbian gypsies

    Directory of Open Access Journals (Sweden)

    Čvorović Jelena

    2011-01-01

    Full Text Available Gypsies/Roma make up the largest minority in Europe. Roma communities tend to be segregated and characterized by poverty, unemployment, poor education, and poor quality housing. So far, the European strategy for Gypsy/Roma integration proved insufficient because it fails to account to the normative nature of the isolationist and ethnocentric nature of certain elements of Gypsy culture, as well as the deep and mutual distrust between Gypsies and non-Gypsies within European countries. In Serbia, the Gypsy population tends to suffer disproportionately from higher rates of poverty, unemployment, illiteracy, and disease. At the same time, the Serbian Gypsy women average an infant mortality rate between 10-20%. For most of these girls/women, endogamous, arranged marriages are negotiated at an early age, usually without their consent. Among these women, a certain level of infant mortality is “expected”, following an underinvestment in some children manifested in their care, feeding, and the response to their illnesses. These juvenile arranged marriages, subsequent reproduction and child mortality are culturally self-sufficient and hence pose a challenge for international human rights: while many Gypsy girls/women are being denied the right to choose whom and when to marry, the Gypsy community itself openly accepts juvenile arranged marriage as a preservation strategy and means of cultural, economic, and societal maintenance and independence. Although efforts to improve education, health, living conditions, encourage employment and development opportunities for Gypsies/Roma are essential, these objectives cannot be attained without directing the changes needed within Gypsy/Roma culture itself. The initial point for change must come from an increased sense of responsibility among the Gypsies themselves.

  3. The LTR promoter of the rat oncomodulin gene is regulated by cell-line specific accessibility in the LTR U3 region

    DEFF Research Database (Denmark)

    Rentsch, J. M.; Hergersberg, M.; Banville, D.;

    2006-01-01

    By germline insertion, a long terminal repeat (LTR) of an intracisternal A-particle type IAP retrovirus has overtaken the transcriptional control of the rat oncomodulin (OM) gene, which codes for a high affinity Ca2+-binding protein with modulatory capacity. In order to get insights into regulatory...... to the one of the OM gene. Genomic sequencing showed a good correlation between CpG hypomethylation in the OM LTR and OM transcription among various cell lines and tissues. DNase I mapping of a 18 kb fragment containing the OM gene and 5' flanking sequences revealed cell-line specific hypersensitivity sites...... located within the U3 region of the LTR element. Several cis-elements in the OM LTR promoter exhibiting cell-line specific occupancy were identified by in vivo DMS-footprinting. Detailed analysis of protein interactions with two such sequence elements in vitro revealed binding of ubiquitously expressed...

  4. Protective efficacy of a recombinant BAC clone of Marek's disease virus containing REV-LTR

    Science.gov (United States)

    Insertion of reticuloendotheliosis virus (REV) long-terminal repeat (LTR) into a bacterial artificial chromosome (BAC) clone of a very virulent strain of Marek’s disease (MD) virus (MDV), Md5 (Kim et al, 2011) rendered the resultant recombinant virus termed rMd5 REV-LTR BAC fully attenuated at passa...

  5. The Song of the Other/Public Space as a Learning Environment and Gypsy Musicians in Turkey

    Science.gov (United States)

    Ozer, Ulas

    2013-01-01

    This work focuses on both public musical practices of Gypsy musicians who live in the Thracian land lying within the northwest of Turkey, and musical learning that takes place here. I primarily highlight the historic dimensions of the relation between Gypsies and music and emphasized musicianship in the lives of Gypsies as a fundamental class…

  6. The sunflower (Helianthus annuus L.) genome reflects a recent history of biased accumulation of transposable elements.

    Science.gov (United States)

    Staton, S Evan; Bakken, Bradley H; Blackman, Benjamin K; Chapman, Mark A; Kane, Nolan C; Tang, Shunxue; Ungerer, Mark C; Knapp, Steven J; Rieseberg, Loren H; Burke, John M

    2012-10-01

    Aside from polyploidy, transposable elements are the major drivers of genome size increases in plants. Thus, understanding the diversity and evolutionary dynamics of transposable elements in sunflower (Helianthus annuus L.), especially given its large genome size (∼3.5 Gb) and the well-documented cases of amplification of certain transposons within the genus, is of considerable importance for understanding the evolutionary history of this emerging model species. By analyzing approximately 25% of the sunflower genome from random sequence reads and assembled bacterial artificial chromosome (BAC) clones, we show that it is composed of over 81% transposable elements, 77% of which are long terminal repeat (LTR) retrotransposons. Moreover, the LTR retrotransposon fraction in BAC clones harboring genes is disproportionately composed of chromodomain-containing Gypsy LTR retrotransposons ('chromoviruses'), and the majority of the intact chromoviruses contain tandem chromodomain duplications. We show that there is a bias in the efficacy of homologous recombination in removing LTR retrotransposon DNA, thereby providing insight into the mechanisms associated with transposable element (TE) composition in the sunflower genome. We also show that the vast majority of observed LTR retrotransposon insertions have likely occurred since the origin of this species, providing further evidence that biased LTR retrotransposon activity has played a major role in shaping the chromatin and DNA landscape of the sunflower genome. Although our findings on LTR retrotransposon age and structure could be influenced by the selection of the BAC clones analyzed, a global analysis of random sequence reads indicates that the evolutionary patterns described herein apply to the sunflower genome as a whole.

  7. Expression of CysLTR-1 and CysLTR-2 in adenoid tissues from children with adenoid hypertrophy%CysLTR-1和CysLTR-2在腺样体肥大儿童腺样体组织中的表达

    Institute of Scientific and Technical Information of China (English)

    朱美华; 梁敏; 王志坚; 沈雁; 温红艳; 翟锦明; 杨晓彬

    2015-01-01

    Objective To examine the expression of cysteinyl leukotriene receptor-1 (CysLTR-1) and cysteinyl leukotriene receptor-2 (CysLTR-2) in the adenoid tissues from children with adenoid hypertrophy (AH) and to explore the role of leukotrienes in the pathogenesis of AH. Methods Sixty children with AH who were treated by adenoidectomy and/or tonsillectomy were classified into two groups: simple AH and AH plus allergic rhinitis (n=30 each). Twenty children who underwent tonsillectomy due to recurrent purulent tonsillitis were selected as the control group. The expression of CysLTR-1 and CysLTR-2 in the excised tonsil and/or adenoid tissues was determined by immunolfuorescence histochemical labeling and integrated optical density measurement. Results The expression of CysLTR-1 and CysLTR-2 in the adenoid and tonsil tissues increased signiifcantly in both the simple AH group and AH plus allergic rhinitis group compared with the control group (P<0.01). The expression of CysLTR-1 and CysLTR-2 in the AH plus allergic rhinitis group increased more signiifcantly compared with the simple AH group (P<0.01). Conclusions CysLTR-1 and CysLTR-2 are highly expressed in the adenoid tissues from children with AH, suggesting that leukotrienes are involved in the pathogenesis of AH.%目的:检测腺样体肥大(adenoid hypertrophy, AH)患儿腺样体组织中半胱氨酸白三烯受体1(CysLTR-1)和半胱氨酸白三烯受体2(CysLTR-2)的表达,探讨白三烯在AH发病中的作用。方法将60例行腺样体/扁桃体切除的AH患儿分为单纯AH组与伴变态反应性鼻炎AH组(每组30例),以反复化脓性扁桃体炎行扁桃体切除的20例患儿作为对照组。通过免疫荧光组织化学标记法及累积光密度(IOD)测量方法观察各组患儿术后扁桃体/腺样体组织中CysLTR-1和CysLTR-2的表达。结果在两个AH组的腺样体组织和扁桃体组织中,CysLTR-1和CysLTR-2的表达强度均明显高于对照组(P

  8. Tissue specificity of enhancer and promoter activities of a HERV-K(HML-2) LTR.

    Science.gov (United States)

    Ruda, V M; Akopov, S B; Trubetskoy, D O; Manuylov, N L; Vetchinova, A S; Zavalova, L L; Nikolaev, L G; Sverdlov, E D

    2004-08-01

    Transient expression of a luciferase reporter gene was used to evaluate tissue-specific promoter and enhancer activities of a solitary extraviral long terminal repeat (LTR) of the human endogenous retrovirus K (HERV-K) in several human and CHO cell lines. The promoter activity of the LTR varied from virtually not detectable (GS and Jurkat cells) to as high as that of the SV40 early promoter (Tera-1 human testicular embryonal carcinoma cells). The negative regulatory element (NRE) of the LTR retained its activity in all cell lines where the LTR could act as a promoter, and was also capable of binding host cell nuclear proteins. The enhancer activity of the LTR towards the SV40 early promoter was detected only in Tera-1 cells and was not observed in a closely related human testicular embryonal carcinoma cell line of different origin, NT2/D1. A comparison of proteins bound to central part of the LTR in nuclear extracts from Tera-1 and NT2/D1 by electrophoretic mobility shift assay revealed striking differences that could be determined by different LTR enhancer activities in these cells. Tissue specificity of the SV40 early promoter activity was also revealed.

  9. Unlocking hidden community assets : Marginal specialization and community resilience of Gypsy-Travelers in the Netherlands

    NARCIS (Netherlands)

    Salemink, Koen

    2016-01-01

    Enduring social exclusion has forced Gypsy-Travelers to specialize in marginal economic activities. These marginal specializations build on specific skills, attitudes, and strategies which are valuable for the communities’ overall development. Today’s Gypsy-Traveler communities face a context of rap

  10. Effects of pedunculate oak tree vitality on gypsy moth preference and performance

    Directory of Open Access Journals (Sweden)

    Milanović Slobodan

    2014-01-01

    Full Text Available Gypsy moths and powdery mildew play a significant role in oak decline processes. However, information is lacking on the effects on the gypsy moth of impaired tree vitality caused by defoliation or parasite infection. We assessed how pedunculate oak leaves collected from vigorous, declining, and infected trees influenced gypsy moth preference and performance (growth and nutritional indices. We found a negative effect of powdery mildew-infected leaves on gypsy moth performance, while declining trees had positive effects on gypsy moth performance and preference. All examined parameters of larvae fed declining oak leaves were higher than those of larvae fed vigorous oak leaves. Increased growth on declining oak leaves was caused by both higher consumption and more efficient food utilization. The results of this research could help us to better understand multitrophic interactions in complex communities such as oak forests. [Projekat Ministarstva nauke Republike Srbije, br. 43007: Studying climate change and its influence on the environment: impacts, adaptation and mitigation

  11. The variances of Sp1 and NF-κB elements correlate with the greater capacity of Chinese HIV-1 B′-LTR for driving gene expression

    OpenAIRE

    2016-01-01

    The 5′ end of HIV-1 long terminal repeat (LTR) serves as a promoter that plays an essential role in driving viral gene transcription. Manipulation of HIV-1 LTR provides a potential therapeutic strategy for suppressing viral gene expression or excising integrated provirus. Subtype-specific genetic diversity in the LTR region has been observed. The minor variance of LTR, particularly in the transcription factor binding sites, can have a profound impact on its activity. However, the LTR profiles...

  12. Accurate episomal HIV 2-LTR circles quantification using optimized DNA isolation and droplet digital PCR

    Directory of Open Access Journals (Sweden)

    Eva Malatinkova

    2014-11-01

    Full Text Available Introduction: In HIV-infected patients on combination antiretroviral therapy (cART, the detection of episomal HIV 2-LTR circles is a potential marker for ongoing viral replication. Quantification of 2-LTR circles is based on quantitative PCR or more recently on digital PCR assessment, but is hampered due to its low abundance. Sample pre-PCR processing is a critical step for 2-LTR circles quantification, which has not yet been sufficiently evaluated in patient derived samples. Materials and Methods: We compared two sample processing procedures to more accurately quantify 2-LTR circles using droplet digital PCR (ddPCR. Episomal HIV 2-LTR circles were either isolated by genomic DNA isolation or by a modified plasmid DNA isolation, to separate the small episomal circular DNA from chromosomal DNA. This was performed in a dilution series of HIV-infected cells and HIV-1 infected patient derived samples (n=59. Samples for the plasmid DNA isolation method were spiked with an internal control plasmid. Results: Genomic DNA isolation enables robust 2-LTR circles quantification. However, in the lower ranges of detection, PCR inhibition caused by high genomic DNA load substantially limits the amount of sample input and this impacts sensitivity and accuracy. Moreover, total genomic DNA isolation resulted in a lower recovery of 2-LTR templates per isolate, further reducing its sensitivity. The modified plasmid DNA isolation with a spiked reference for normalization was more accurate in these low ranges compared to genomic DNA isolation. A linear correlation of both methods was observed in the dilution series (R2=0.974 and in the patient derived samples with 2-LTR numbers above 10 copies per million peripheral blood mononuclear cells (PBMCs, (R2=0.671. Furthermore, Bland–Altman analysis revealed an average agreement between the methods within the 27 samples in which 2-LTR circles were detectable with both methods (bias: 0.3875±1.2657 log10. Conclusions: 2-LTR

  13. Low levels of LTR retrotransposon deletion by ectopic recombination in the gigantic genomes of salamanders.

    Science.gov (United States)

    Frahry, Matthew Blake; Sun, Cheng; Chong, Rebecca A; Mueller, Rachel Lockridge

    2015-02-01

    Across the tree of life, species vary dramatically in nuclear genome size. Mutations that add or remove sequences from genomes-insertions or deletions, or indels-are the ultimate source of this variation. Differences in the tempo and mode of insertion and deletion across taxa have been proposed to contribute to evolutionary diversity in genome size. Among vertebrates, most of the largest genomes are found within the salamanders, an amphibian clade with genome sizes ranging from ~14 to ~120 Gb. Salamander genomes have been shown to experience slower rates of DNA loss through small (i.e., salamander genomes resulting from larger deletions. Here, we focus on one type of large deletion-ectopic-recombination-mediated removal of LTR retrotransposon sequences. In ectopic recombination, double-strand breaks are repaired using a "wrong" (i.e., ectopic, or non-allelic) template sequence-typically another locus of similar sequence. When breaks occur within the LTR portions of LTR retrotransposons, ectopic-recombination-mediated repair can produce deletions that remove the internal transposon sequence and the equivalent of one of the two LTR sequences. These deletions leave a signature in the genome-a solo LTR sequence. We compared levels of solo LTRs in the genomes of four salamander species with levels present in five vertebrates with smaller genomes. Our results demonstrate that salamanders have low levels of solo LTRs, suggesting that ectopic-recombination-mediated deletion of LTR retrotransposons occurs more slowly than in other vertebrates with smaller genomes.

  14. Host plant effect on the susceptibility of gypsy moth caterpillars to insecticides

    Directory of Open Access Journals (Sweden)

    Milanović Slobodan

    2002-01-01

    Full Text Available Gypsy moth (Lymantria dispar L is the most significant pest of broadleaf forests. The dynamics of gypsy moth population depends on several biotic and abiotic factors, but it is also highly dependent on the quality of consumed food. The gypsy moth control increasingly relies on the biological preparations based on Bacillus thuringiensis subspec. kurstaki (Btk and Lymantria dispar Nuclear Poliedrosis virus (NPV. Chemical preparations are still applied although more rarely, the pyrethroids which include also lambda-cyhalothrin This paper presents the study results of the effect of host plant on gypsy moth caterpillar (Lymantria dispar L susceptibility to lambda cihalotrine insecticide, by which the study oak leaves were contaminated. The study results show the lowest mortality of the caterpillars fed on contaminated leaves of Turkey oak (17.5%, then pedunculate oak (86.1%, and the highest mortality of caterpillars fed on sessile oak leaves (92%. The rate of the gypsy moth caterpillar development depends on the host plant Susceptibility of the gypsy moth caterpillars to the above preparation depends on the host plant The knowledge of the effect of host plant on insecticide efficiency in gypsy moth suppression would render insecticide utilisation optimal.

  15. The Elusive Search for Nora Luca: Tony Gatlif's Adventures in Gypsy Land

    Directory of Open Access Journals (Sweden)

    Sylvie Eve Blum-Reid

    2005-08-01

    Full Text Available This essay examines Gypsy filmmaker Tony Gatlif and his 1997 film Gadjo Dilo (The Crazy Foreigner. The film ventures on the icy roads of Romania and casts a young French man in search for Nora Luca’s voice, a woman taped by his musicologist father. The young man is adopted by a Romanian Gypsy community and initiated to Gypsy culture. The film reverts stereotypes associated to Gypsies and questions the place of the white traveler in late 20th century Europe. Questions of otherness and exoticism are raised amidst the Western urge to preserve and collect other cultures. The essay is informed by current Gypsies studies on Gypsy law that locate the interaction Rom cultures have had with non-Rom cultures. The film may be seen as a trilingual road movie set in Eastern Europe, yet Gatlif, a man for whom “the road is his country” stretches the limits of the genre, usually situated in the vast open spaces of North America. Gender is important in the analysis of the film as Rom women encountered act as mediators between two different cultures and spaces. Last, the essay reconsiders the place of Tony Gatlif, a now recognized French filmmaker, a spokesperson for Gypsies who delocalised the story and traveled to Eastern Europe. An analysis of the reception of the film adds to the discussion of a filmmaker, born in Algeria, of Berber and Andalusian descent.

  16. Stand Factors and Risk Analysis of Harm Extent of Gypsy Moths

    Institute of Scientific and Technical Information of China (English)

    Shi Juan; Yan Guozeng; Guan Ling; Li Zhenyu; Feng Jihua

    2006-01-01

    Twelve stand factors affecting the harm extent of Gypsy moths (Lymantria dispar) were studied.Through stepwise regression analyses,three key factors were selected,such as crown density,soil infertility extent,and forestland area.The results showed that there exists a positive correlation between soil infertility extent and the harm extent of Gypsy moths and a significant negative correlation between the other two key factors and the harm extent of this insect.Using the three key factors,a multivariate linear regression model was established by which the authors made a risk analysis of the harm extent of Gypsy moths.

  17. Gypsy endogenous retrovirus maintains potential infectivity in several species of Drosophilids

    Directory of Open Access Journals (Sweden)

    de Frutos Rosa

    2008-10-01

    Full Text Available Abstract Background Sequences homologous to the gypsy retroelement from Drosophila melanogaster are widely distributed among drosophilids. The structure of gypsy includes an open reading frame resembling the retroviral gene env, which is responsible for the infectious properties of retroviruses. Results In this study we report molecular and phylogeny analysis of the complete env gene from ten species of the obscura group of the genus Drosophila and one species from the genus Scaptomyza. Conclusion The results indicate that in most cases env sequences could produce a functional Env protein and therefore maintain the infectious capability of gypsy in these species.

  18. Forest Pest Management, Gypsy Moth Trap Catches on Federal Land, 1990-1997

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — Enclosed are the results of the 1990-1997 gypsy moth pheromone trapping program on Federal lands inVirginia, North Carolina, South Carolina, Kentucky, Tennessee,...

  19. 76 FR 18510 - Notice of Request for Extension of Approval of an Information Collection; Gypsy Moth...

    Science.gov (United States)

    2011-04-04

    ... INFORMATION CONTACT: For information on the gypsy moth program, contact Mr. Paul Chaloux, National Program..., fences, vehicles, and houses during their search for food. Entire areas may be stripped of all...

  20. Transposable elements P and gypsy in natural populations of Drosophila willistoni

    Directory of Open Access Journals (Sweden)

    Adriana Koslovski Sassi

    2005-12-01

    Full Text Available The presence and integrity of the P transposon and the gypsy retrotransposon in the genome of 18 samples of natural Drosophila willistoni populations collected from a large area of South America were Southern blot screened using Drosophila melanogaster probes. The aim of this screening was provide further knowledge-base on the geographical distribution of D. willistoni and to carry out an inter-population analysis of the P and gypsy elements present in the genomes of the populations analyzed. The fragment patterns obtained indicate that both the P and gypsy elements are ancient in the D. willistoni genome, but whereas the gypsy retroelement appears to be invariable and stable the P element varies between populations and appears to still have some capacity for mobilization.

  1. Gypsies in 19th-Century French Literature: The Paradox in Centering the Periphery

    Directory of Open Access Journals (Sweden)

    Udasmoro W.

    2015-06-01

    Full Text Available The issues of liberty and views of the “Other” were common in 19th-century French literary discourse. In many aspects, the “Other” appeared to hold a position of strength. In literature, Prosper Mérimée and Victor Hugo attempted to centralize gypsy women through their narratives, even though gypsies (as with Jews had been marginalized (though present throughout French history. Mérimée’s Carmen and Hugo’s Notre Dame de Paris presented new central perspectives on the peripheral, which in this context should be understood to mean gypsies. This research paper attempts to answer the following questions: What ideology lies behind both stories’ centralization of the peripheral gypsy women? How do the authors portray gypsy women? The goal of this article is to explore the operations of power in a gender-relations context, focusing on the construction of gypsy women in two 19th-century French novels.

  2. Vándorcigányok az államszocializmusban - Gypsy Travellers in the Communist Era

    Directory of Open Access Journals (Sweden)

    GYENGE, András

    2013-12-01

    Full Text Available Afterhaving recognised the social problems of settled Gypsies, we also have to turn our attention to the tensions resulting from the lack of social integration of travelling Gypsies in Hungary. Can we even talk about classical examples of travelling Gypsies in Hungary in the Communist era? The literature published so far claims that most statistics on Romani people in Hungary are unreliable. This doesn’t mean that the results of research carried out on this topic should be completely ignored, but the data have to be considered cautiously. It is especially true for surveys after 1945, since at that time highly different methods were used to determine the proportion of Romani people in the Hungarian society; hence the divergent results and obscurity of actual numbers. All we can give is estimation. My aim was to resolve contradictions and give a more precise picture of the situation of Gypsies, especially that of travelling Gypsies in Hungary, therefore I have involved in my research written sources such as reports of the MSZMP KB [Central Committee of the Hungarian Socialist Workers’ Party], case studies, qualitative field-works etc. Based on these documents, it has become possible to describe the process how the nomadic lifestyle of Gypsies in Hungary disappeared during the period from the turn of the century until the political transition. Additionally, a quite unique phenomenonis detectable in the Communist era; an institutionalised wandering controlled by the state which can be seen as the temporal extension of the former nomadism.

  3. On the structure of AP-4 responsive element in the LTR of Jembrana disease virus

    Institute of Scientific and Technical Information of China (English)

    2003-01-01

    Previous studies with deletion and sequence analysis of JDV LTR showed that there is a putative AP-4 responsive element in LTR. By antisense transient assay and gel shifting assay, we for the first time demonstrated that AP-4 modulated JDV gene expression by binding DNA directly to bovine cells. The results, derived from site-directed mutagenesis experiments, suggest that the six base pairs of AP-4 binding site (CAGCTG) have different effects on JDV gene expression. When the first two base pairs changed to GC, JDV gene expression is severely decreased.

  4. Akv murine leukemia virus enhances bone tumorigenesis in hMT-c-fos-LTR transgenic mice

    DEFF Research Database (Denmark)

    Schmidt, Jörg; Krump-Konvalinkova, Vera; Luz, Arne

    1995-01-01

    hMt-c-fos-LTR transgenic mice (U. Rüther, D. Komitowski, F. R. Schubert, and E. F. Wagner. Oncogene 4, 861–865, 1989) developed bone sarcomas in 20% (3/15) of females at 448 ± 25 days and in 8% (1/12) of males at 523 days. After infection of newborns with Akv, an infectious retrovirus derived fro...

  5. Molecular and biological characterization of a Marek's disease virus field strain with reticuloendotheliosis virus LTR insert.

    Science.gov (United States)

    Cui, Zhizhong; Zhuang, Guoqin; Xu, Xiaoyun; Sun, Aijun; Su, Shuai

    2010-04-01

    A Marek's disease virus (MDV) field strain designated GX0101 was isolated from a layer flock and confirmed to be a recombinant virus with an insert of a long terminal repeat (LTR) from the reticuloendotheliosis virus (REV). A chimeric molecule containing an REV-LTR insert of 539 bp and its flanking sequences from MDV was amplified and sequenced. An REV-LTR downstream from the Internal Repeat Short (IRS) region has 77.4-98.6% homology to seven REV field strains isolated from different avian species in different parts of the world. The insertion site is located downstream of SORF 1 and upstream of SORF2 in the IRS region near the junction with the Unique Short (US) region in the MDV serotype 1 genome. Chicken experiments were conducted to determine the oncogenicity of the recombinant GX0101 virus and its transmissibility to contact chickens. Dot blot hybridization was used to detect the presence of the pp38 gene in feather tips from GX0101 or Md5 infected and contact birds. The pp38 was detected in GX0101 contact birds about 1-2 weeks earlier than in Md5 birds when both groups were vaccinated with HVT vaccine. Long term pathogenicity tests in specific pathogen free (SPF) chickens reveal that the recombinant GX0101 has a higher virulence than GA, but less virulence than Md5, the very virulent pathotype of MDV. This is the first report on an oncogenic serotype 1 MDV field strain with LTR insert and its pathogenicity.

  6. Biological Characterization of CVRM2-BAC, A Recombinant CV1988 Virus Containing an REV LTR Insertion

    Science.gov (United States)

    It has been previously reported that avian retroviruses, i.e. avian leukosis virus (ALV) and reticoloendotheliosis virus (REV), integrate in the Marek’s disease virus genome affecting MDV pathogenicity. RM-2 is an attenuated serotype 1 MDV virus generated by insertion of the REV LTR in the genome of...

  7. Involvement of chromatin and histone acetylation in theregulation of HIV-LTR by thyroid hormone receptor

    Institute of Scientific and Technical Information of China (English)

    2001-01-01

    The HIV-1 LTR controls the expression of HIV-1 viral genes and thus is critical for viral propagation and pathology.Numerous host factors have been shown to participate in the regulation of the LTR promoter.Among them is the thyroid hormone (T3) receptor (TR).TR has been shown to bind to the critical region of the promoter that contain the NFκB and Sp1 binding sites.Interestingly,earlier transient transfection studies in tissue culture cells have yielded contradicting conclusions on the role of TR in LTR regulation,likely due to the use of different cell types and/or lack of proper chromatin organization.Here,using the frog oocyte as a model system that allows replication-coupled chromatin assembly,mimicking that in somatic cells,we demonstrate that unliganded heterodimers of TR and RXR (9-cis retinoic acid receptor) repress LTR while the addition of T3 relieves the repression and further activates the promoter.More importantly,we show that chromatin and unliganded TR/RXR synergize to repress the promoter in a histone deacetylase-dependent manner.

  8. Large-scale transcriptome data reveals transcriptional activity of fission yeast LTR retrotransposons

    DEFF Research Database (Denmark)

    Mourier, Tobias; Willerslev, Eske

    2010-01-01

    of transcriptional activity are observed from both strands of solitary LTR sequences. Transcriptome data collected during meiosis suggests that transcription of solitary LTRs is correlated with the transcription of nearby protein-coding genes. CONCLUSIONS: Presumably, the host organism negatively regulates...

  9. The dynamics of LTR retrotransposon accumulation across 25 million years of panicoid grass evolution.

    Science.gov (United States)

    Estep, M C; DeBarry, J D; Bennetzen, J L

    2013-02-01

    Sample sequence analysis was employed to investigate the repetitive DNAs that were most responsible for the evolved variation in genome content across seven panicoid grasses with >5-fold variation in genome size and different histories of polyploidy. In all cases, the most abundant repeats were LTR retrotransposons, but the particular families that had become dominant were found to be different in the Pennisetum, Saccharum, Sorghum and Zea lineages. One element family, Huck, has been very active in all of the studied species over the last few million years. This suggests the transmittal of an active or quiescent autonomous set of Huck elements to this lineage at the founding of the panicoids. Similarly, independent recent activity of Ji and Opie elements in Zea and of Leviathan elements in Sorghum and Saccharum species suggests that members of these families with exceptional activation potential were present in the genome(s) of the founders of these lineages. In a detailed analysis of the Zea lineage, the combined action of several families of LTR retrotransposons were observed to have approximately doubled the genome size of Zea luxurians relative to Zea mays and Zea diploperennis in just the last few million years. One of the LTR retrotransposon amplification bursts in Zea may have been initiated by polyploidy, but the great majority of transposable element activations are not. Instead, the results suggest random activation of a few or many LTR retrotransposons families in particular lineages over evolutionary time, with some families especially prone to future activation and hyper-amplification.

  10. Insertion of a Reticuloendotheliosis virus LTR into the Marek's disease virus genome

    Science.gov (United States)

    Marek’s disease virus (MDV) had previously been co-cultivated in culture with Reticuloendotheliosis virus (REV). During co-cultivation, a long terminal repeat (LTR) from REV was inserted into the MDV genome. The resulting MDV, designated RM1, was attenuated but still induced severe thymic and bursal...

  11. Fight, Flight and Playing White: An Examination of Coping Strategies Adopted by Gypsy Traveller Adolescents in English Secondary Schools

    Science.gov (United States)

    Derrington, Chris

    2007-01-01

    This paper draws on findings from a longitudinal study of Gypsy Traveller students attending English secondary schools. Analysis of over 400 interviews with 44 Gypsy Traveller students, their parents and teachers over a 5-year period identified several pull and push factors that impact on secondary school engagement and retention. Of these,…

  12. Representations About Discrimination Practices in the Education System Built by Gypsies (Ciganos in the Lisbon Metropolitan Area (Portugal

    Directory of Open Access Journals (Sweden)

    Maria Manuela Mendes

    2012-01-01

    Full Text Available In Portugal, Gypsies (Ciganos are categorized as ethnical and minority group, and they are particularly vulnerable to poverty and social exclusion. There is no doubt that they are one of the groups that rise more antipathy among the other Portuguese. In what concerns the “social images” built by the dominant society, there is a negative evaluation of the Gypsies and this image has persisted and resisted so far. Therefore, Gypsy identity and culture are considered marginal. However, the historical discrimination against Gypsies and the existence of a scarce interaction with the non-Gypsy society are some interesting results coming out from a qualitative study finished in 2006 about social representations and emotions that emerged in discriminatory contexts related with the educational system. One of the main objectives of this article is to find how Gypsies represent the school, the formal education, and the social agents that intervene in this educational context, like teachers, other school workers, and other students (non-Gypsies. It is possible to notice some discourses that revealed negative perceptions and rejection feelings incorporated by some Gypsies. They feel that they are treated like “inferior” persons and not recognized by the whole society.

  13. [Chromosomal organization of centromeric Ty3/gypsy retrotransposons in Allium cepa L. and Allium fistulosum L].

    Science.gov (United States)

    Kiseleva, A V; Kirov, I V; Khrustaleva, L I

    2014-06-01

    This is the first report on the presence of Ty3/gypsy-like retrotransposons in the centromeric region of Allium cepa and Allium fistulosum. The paper identifies the putative Ty3/gypsy centromeric retrotransposons (CR) among the DNA sequences of A. cepa present in the NCBI database and evaluates their copy number in the genomes of Allium cepa and Allium fistulosum. The putative copy number of Ty3/gypsy CR constituted about 26000 for A. cepa and about 7000 for A. fistulosum. The chromosomal organization of Ty3/gypsy CR was analyzed with the help of fluorescent in situ hybridization (FISH). The 300-bp PCR products synthesized with genomic DNA of Allium cepa and Allium fistulosum and primers designed for the sequence ET645811 of A. cepa (Genome Survey Sequence database), displaying similarity to the reverse transcriptase of the CR Ty3/gypsy family, served as FISH hybridization probes. On the chromosomes of A. cepa, hybridization signals were mainly localized in the centromeric region. On the chromosomes of A. fistulosum the signals were less expressed in the centromeric regions, though they were abundant in other chromosomal regions. The pathways of evolution in these closely related species are discussed.

  14. Specificity of Developmental Resistance in Gypsy Moth (Lymantria dispar) to two DNA-Insect Viruses

    Institute of Scientific and Technical Information of China (English)

    Kelli Hoover; Michael J. Grove

    2009-01-01

    Gypsy moth (Lymantria dispar) larvae displayed marked developmental resistance within an instar to L. dispar M nucleopolyhedrovirus (LdMNPV) regardless of the route of infection (oral or intrahemocoelic) in a previous study, indicating that in gypsy moth, this resistance has a systemic component. In this study, gypsy moth larvae challenged with the Amsacta moorei entomopoxvirus (AMEV) showed developmental resistance within the fourth instar to oral, but not intrahemocoelic, inoculation. In general, gypsy moth is considered refractory to oral challenge with AMEV, but in this study, 43% mortality occurred in newly molted fourth instars fed a dose of 5×106 large spheroids of AMEV; large spheroids were found to be more infectious than small spheroids when separated by a sucrose gradient. Developmental resistance within the fourth instar was reflected by a 2-fold reduction in mortality (18%-21%) with 5×106 large spheroids in larvae orally challenged at 24, 48 or 72 h post-molt. Fourth instars were highly sensitive to intrahemocoelic challenge with AMEV; 1PFU produced approximately 80% mortality regardless of age within the instar. These results indicate that in gypsy moth, systemic developmental resistance may be specific to LdMNPV, reflecting a co-evolutionary relationship between the baculovirus and its host.

  15. Analysis on LTR Retrotransposon in Vitis vinifera Based on the LTR-FINDER%基于LTR-FINDER分析葡萄基因组中LTR反转录转座子

    Institute of Scientific and Technical Information of China (English)

    李卫涛; 张焕丽; 押辉远

    2013-01-01

    运用LTR-FINDER对葡萄(Vitis vinifera)基因组中的19条染色体LTR反转录转座子进行分析.结果表明,葡萄基因组中19条染色体上共检索到5 470个LTR反转录转座子,约占葡萄基因组10.7%.LTR反转录转座子分析为进一步开展葡萄品种鉴定和遗传多样性分析奠定了基础.

  16. Rapid turnover of 2-LTR HIV-1 DNA during early stage of highly active antiretroviral therapy.

    Directory of Open Access Journals (Sweden)

    Weijun Zhu

    Full Text Available BACKGROUND: Despite prolonged treatment with highly active antiretroviral therapy (HAART, the infectious HIV-1 continues to replicate and resides latently in the resting memory CD4+ T lymphocytes, which blocks the eradication of HIV-1. The viral persistence of HIV-1 is mainly caused by its proviral DNA being either linear nonintegrated, circular nonintegrated, or integrated. Previous reports have largely focused on the dynamics of HIV-1 DNA from the samples collected with relatively long time intervals during the process of disease and HAART treatment, which may have missed the intricate changes during the intervals in early treatment. METHODOLOGY/PRINCIPAL FINDINGS: In this study, we investigated the dynamics of HIV-1 DNA in patients during the early phase of HARRT treatment. Using optimized real time PCR, we observed significant changes in 2-LTR during the first 12-week of treatment, while total and integrated HIV-1 DNA remained stable. The doubling time and half-life of 2-LTR were not correlated with the baseline and the rate of changes in plasma viral load and various CD4+ T-cell populations. Longitudinal analyses on 2-LTR sequences and plasma lipopolysaccharide (LPS levels did not reveal any significant changes in the same treatment period. CONCLUSIONS/SIGNIFICANCE: Our study revealed the rapid changes in 2-LTR concentration in a relatively large number of patients during the early HAART treatment. The rapid changes indicate the rapid infusion and clearance of cells bearing 2-LTR in the peripheral blood. Those changes are not expected to be caused by the blocking of viral integration, as our study did not include the integrase inhibitor raltegravir. Our study helps better understand the dynamics of HIV-DNA and its potential role as a biomarker for the diseases and for the treatment efficacy of HAART.

  17. Hydroxyurea inhibits the transactivation of the HIV-long-terminal repeat (LTR) promoter

    Science.gov (United States)

    Calzado, M A; Macho, A; Lucena, C; Muñoz, E

    2000-01-01

    HIV-1 gene expression is regulated by the promoter/enhancer located within the U3 region of the proviral 5′ LTR that contains multiple potential cis-acting regulatory sites. Here we describe that the inhibitor of the cellular ribonucleoside reductase, hydroxyurea (HU), inhibited phorbol myristate acetate- or tumour necrosis factor-alpha-induced HIV-1-LTR transactivation in both lymphoid and non-lymphoid cells in a dose-dependent manner within the first 6 h of treatment, with a 50% inhibitory concentration of 0·5 mm. This inhibition was found to be specific for the HIV-1-LTR since transactivation of either an AP-1-dependent promoter or the CD69 gene promoter was not affected by the presence of HU. Moreover, gel-shift assays in 5.1 cells showed that HU prevented the binding of the NF-κB to the κB sites located in the HIV-1-LTR region, but it did not affect the binding of both the AP-1 and the Sp-1 transcription factors. By Western blots and cell cycle analyses we detected that HU induced a rapid dephosphorylation of the pRB, the product of the retinoblastoma tumour suppressor gene, and the cell cycle arrest was evident after 24 h of treatment. Thus, HU inhibits HIV-1 promoter activity by a novel pathway that implies an inhibition of the NF-κB binding to the LTR promoter. The present study suggests that HU may be useful as a potential therapeutic approach for inhibition of HIV-1 replication through different pathways. PMID:10792382

  18. Sensitivity of gypsy moth neurosecretory neurons to acute thermal stress

    Directory of Open Access Journals (Sweden)

    Ilijin Larisa

    2013-01-01

    Full Text Available In gypsy moth caterpillars exposed to a temperature of 35°C (for 1, 12 and 24 h and caterpillars that were exposed to elevated temperature for 12 h and were allowed to recover for 12 h at 23°C, changes in the brain protein profiles and morphometric characteristics of A1’ medial and L2 lateral protocerebral neurosecretory neurons were analyzed. In all groups, protein bands with a molecular mass corresponding to that of members of heat-shock protein families were detected, indicating that acute exposure to this temperature likely induced the synthesis of HSP. Increased morphometric parameters of A1’ neurons and the large amount of neurosecretory material in the neuron body implicate that the temperature of 35°C is not in the temperature range that exerts stimulatory effects on growth and survival. Changes in the morphometric characteristics of L2 neurosecretory neurons from the lateral part of the protocerebrum, and retention of neurosecretory material in their cytoplasm indicate a low level of secretion.

  19. Effects of As2O3 on DNA methylation, genomic instability, and LTR retrotransposon polymorphism in Zea mays.

    Science.gov (United States)

    Erturk, Filiz Aygun; Aydin, Murat; Sigmaz, Burcu; Taspinar, M Sinan; Arslan, Esra; Agar, Guleray; Yagci, Semra

    2015-12-01

    Arsenic is a well-known toxic substance on the living organisms. However, limited efforts have been made to study its DNA methylation, genomic instability, and long terminal repeat (LTR) retrotransposon polymorphism causing properties in different crops. In the present study, effects of As2O3 (arsenic trioxide) on LTR retrotransposon polymorphism and DNA methylation as well as DNA damage in Zea mays seedlings were investigated. The results showed that all of arsenic doses caused a decreasing genomic template stability (GTS) and an increasing Random Amplified Polymorphic DNAs (RAPDs) profile changes (DNA damage). In addition, increasing DNA methylation and LTR retrotransposon polymorphism characterized a model to explain the epigenetically changes in the gene expression were also found. The results of this experiment have clearly shown that arsenic has epigenetic effect as well as its genotoxic effect. Especially, the increasing of polymorphism of some LTR retrotransposon under arsenic stress may be a part of the defense system against the stress.

  20. Genetic studies of the Roma (Gypsies: a review

    Directory of Open Access Journals (Sweden)

    Gresham David

    2001-04-01

    Full Text Available Abstract Background Data provided by the social sciences as well as genetic research suggest that the 8-10 million Roma (Gypsies who live in Europe today are best described as a conglomerate of genetically isolated founder populations. The relationship between the traditional social structure observed by the Roma, where the Group is the primary unit, and the boundaries, demographic history and biological relatedness of the diverse founder populations appears complex and has not been addressed by population genetic studies. Results Recent medical genetic research has identified a number of novel, or previously known but rare conditions, caused by private founder mutations. A summary of the findings, provided in this review, should assist diagnosis and counselling in affected families, and promote future collaborative research. The available incomplete epidemiological data suggest a non-random distribution of disease-causing mutations among Romani groups. Conclusion Although far from systematic, the published information indicates that medical genetics has an important role to play in improving the health of this underprivileged and forgotten people of Europe. Reported carrier rates for some Mendelian disorders are in the range of 5 -15%, sufficient to justify newborn screening and early treatment, or community-based education and carrier testing programs for disorders where no therapy is currently available. To be most productive, future studies of the epidemiology of single gene disorders should take social organisation and cultural anthropology into consideration, thus allowing the targeting of public health programs and contributing to the understanding of population structure and demographic history of the Roma.

  1. Improvements to LQGI/LTR Methodology for Plants with Lightly Damped or Low Frequency Poles

    Science.gov (United States)

    1992-12-01

    93 IV X-29 Aircraft Longitudinal MIMO Model Design .......................................... 94 4.1 Plant...nyrads= F reC..: I -4- 16,7 -- - --- Figure 28 Perturbed Complementary Sensitivity Curves of Three Designs 92 3.5 Summary In aircraft longitudinal control...designing LQG/LTR compensators with the stated methods. An A-4 aircraft longitudinal control is used for a SISO model; it has a pair of lightly damped

  2. Transcriptome of the gypsy moth (Lymantria dispar) larval midgut in response to infection by Bacillus thuringiensis

    Science.gov (United States)

    Transcriptomic profiles of the lepidopteran insect pest Lymantria dispar (gypsy moth) were characterized in the larval midgut in response to infection by the biopesticide Bacillus thuringiensis kurstaki. RNA-Seq approaches were used to define a set of 49,613 assembled transcript sequences, of which...

  3. "What about Us?" Gypsies, Travellers and "White Racism" in Secondary Schools in England

    Science.gov (United States)

    Bhopal, Kalwant

    2011-01-01

    This article examines the concept of "White racism" in relation to the experiences of Gypsy and Traveller groups in England. It is based on ethnographic research conducted in two secondary schools during the years 2006-2009. Interviews were carried out with pupils attending the secondary schools, their mothers and members of the…

  4. Association of the FTO rs9939609 polymorphism with obesity in Roma/Gypsy population.

    Science.gov (United States)

    Mačeková, Soňa; Bernasovský, Ivan; Gabriková, Dana; Bôžiková, Alexandra; Bernasovská, Jarmila; Boroňová, Iveta; Behulová, Regina; Svíčková, Petra; Petrejčíková, Eva; Soták, Miroslav; Sovičová, Adriana; Carnogurská, Jana

    2012-01-01

    The rs9939609 SNP located in the first intron of the fat mass and obesity associated gene (FTO) has been found to be associated with common obesity mainly in populations of European descent. The Roma/Gypsy population as an ethnic minority of Asian Indian origin is well known for its adverse health status with a high prevalence of obesity. The main aim of this study was to examine the contribution of the rs9939609 FTO polymorphism to the high prevalence of obesity in the Roma/Gypsy population. Following a number of anthropometric measurements, the FTO rs9939609 polymorphism was genotyped in 312 Roma/Gypsy individuals. We observed significant differences in body mass index (BMI), waist circumference, and waist-to-hip ratio between different genotypes (P = 0.003, P = 0.012, and P = 0.03, respectively). The waist circumference in the subjects with AA genotype was about 7.1 cm larger than in those with TT genotypes (P = 0.005). However, the strongest association of minor allele A of the rs9939609 FTO polymorphism was found with BMI (odds ratio, 1.55; 95% confidence interval, 1.129-2.128; P = 0.007), even after adjusting for age, sex, and smoking status. This study provides the first report of allele and genotype frequencies for the rs9939609 polymorphism and also the first evidence of the association of the FTO variant with obesity in the Roma/Gypsy population.

  5. Continuity or Rupture? Roma/Gypsy Communities in Rural and Urban Environments under Post-Socialism

    Science.gov (United States)

    Ruzicka, Michal

    2012-01-01

    The aim of the article is to contribute to existing research and debates on social change associated with the post-socialist transformation in Eastern and Central Europe. It does so by drawing attention to and examining the diversity of ways in which such change has been lived through and reflected upon by members of Roma (Gypsy) communities…

  6. Distribution of a Ty3/gypsy-like retroelement on the A and B-chromosomes of Cestrum strigilatum Ruiz & Pav. and Cestrum intermedium Sendtn. (Solanaceae)

    OpenAIRE

    Jéferson Nunes Fregonezi; Laurival A Vilas-Boas; Maria Helena Pelegrinelli Fungaro; Marcos Letaif Gaeta; André Luís Laforga Vanzela

    2007-01-01

    Retroelements are a diversified fraction of eukaryotic genomes, with the Ty1/copia and Ty3/gypsy groups being very common in a large number of plant genomes. We isolated an internal segment of the Ty3/gypsy retroelement of Cestrum strigilatum (Solanaceae) using PCR amplification with degenerate primers for a conserved region of reverse transcriptase. The isolated segment (pCs12) was sequenced and showed similarity with Ty3/gypsy retroelements of monocotyledons and dicotyledons. This segment w...

  7. Identification and characterization of a LTR retrotransposon from the genome of Cyprinus carpio var. Jian.

    Science.gov (United States)

    Cao, Liping; Yin, Guojun; Cao, Zheming; Bing, Xuwen; Ding, Weidong

    2016-06-01

    A Ty3/gypsy-retrotransposon-type transposon was found in the genome of the Jian carp (Cyprinus carpio var. Jian) in a previous study (unpublished), and was designated a JRE retrotransposon (Jian retrotransposon). The full-length JRE retrotransposon is 5126 bp, which includes two long terminal repeats of 470 bp at the 5' end and 453 bp at the 3' end, and two open reading frames between them: 4203 bp encoding the group-specific antigen (GAG) and polyprotein (POL). The pol gene has a typical Ty3/gypsy retrotransposon structure, and the gene order is protease, reverse transcriptase, RNase H, and integrase (PR-RT-RH-IN). A phylogenetic analysis of the pol gene showed that it has similarities of 40.7, 40, and 32.8 %, to retrotransposons of Azumapecten farreri, Mizuhopecten yessoensis, and Xiphophorus maculatus, respectively. Therefore, JRE might belong to the JULE retrotransposon family. The copy number of the JRE transposon in the genome of the Jian carp is 124, determined with real-time quantitative PCR. The mRNA of the JRE retrotransposon is expressed in five Jian carp tissues, the liver, kidney, blood, muscle, and gonad, and slightly higher in the kidney and liver than in the other tissues.

  8. Evidence for the adaptive significance of an LTR retrotransposon sequence in a Drosophila heterochromatic gene

    Directory of Open Access Journals (Sweden)

    Rodriguez Jose M

    2002-03-01

    Full Text Available Abstract Background The potential adaptive significance of transposable elements (TEs to the host genomes in which they reside is a topic that has been hotly debated by molecular evolutionists for more than two decades. Recent genomic analyses have demonstrated that TE fragments are associated with functional genes in plants and animals. These findings suggest that TEs may contribute significantly to gene evolution. Results We have analyzed two transposable elements associated with genes in the sequenced Drosophila melanogaster y; cn bw sp strain. A fragment of the Antonia long terminal repeat (LTR retrotransposon is present in the intron of Chitinase 3 (Cht3, a gene located within the constitutive heterochromatin of chromosome 2L. Within the euchromatin of chromosome 2R a full-length Burdock LTR retrotransposon is located immediately 3' to cathD, a gene encoding cathepsin D. We tested for the presence of these two TE/gene associations in strains representing 12 geographically diverse populations of D. melanogaster. While the cathD insertion variant was detected only in the sequenced y; cn bw sp strain, the insertion variant present in the heterochromatic Cht3 gene was found to be fixed throughout twelve D. melanogaster populations and in a D. mauritiana strain suggesting that it maybe of adaptive significance. To further test this hypothesis, we sequenced a 685bp region spanning the LTR fragment in the intron of Cht3 in strains representative of the two sibling species D. melanogaster and D. mauritiana (~2.7 million years divergent. The level of sequence divergence between the two species within this region was significantly lower than expected from the neutral substitution rate and lower than the divergence observed between a randomly selected intron of the Drosophila Alcohol dehydrogenase gene (Adh. Conclusions Our results suggest that a 359 bp fragment of an Antonia retrotransposon (complete LTR is 659 bp located within the intron of the

  9. HTLV-I antisense transcripts initiating in the 3'LTR are alternatively spliced and polyadenylated

    Directory of Open Access Journals (Sweden)

    Marriott Susan J

    2006-03-01

    Full Text Available Abstract Background Antisense transcription in retroviruses has been suggested for both HIV-1 and HTLV-I, although the existence and coding potential of these transcripts remain controversial. Thorough characterization is required to demonstrate the existence of these transcripts and gain insight into their role in retrovirus biology. Results This report provides the first complete characterization of an antisense retroviral transcript that encodes the previously described HTLV-I HBZ protein. In this study, we show that HBZ-encoding transcripts initiate in the 3' long terminal repeat (LTR at several positions and consist of two alternatively spliced variants (SP1 and SP2. Expression of the most abundant HBZ spliced variant (SP1 could be detected in different HTLV-I-infected cell lines and importantly in cellular clones isolated from HTLV-I-infected patients. Polyadenylation of HBZ RNA occurred at a distance of 1450 nucleotides downstream of the HBZ stop codon in close proximity of a typical polyA signal. We have also determined that translation mostly initiates from the first exon located in the 3' LTR and that the HBZ isoform produced from the SP1 spliced variant demonstrated inhibition of Tax and c-Jun-dependent transcriptional activation. Conclusion These results conclusively demonstrate the existence of antisense transcription in retroviruses, which likely plays a role in HTLV-I-associated pathogenesis through HBZ protein synthesis.

  10. A BAC clone of MDV strain GX0101 with REV-LTR integration retained its pathogenicity

    Institute of Scientific and Technical Information of China (English)

    SUN AiJun; LAWRENCE Petherbridge; ZHAO YuGuang; LI YanPeng; NAIR Venugopal K; CUI ZhiZhong

    2009-01-01

    The complete genome of Marek's disease virus (MDV) strain GX0101,which was integrated with the LTR sequences of REV,was cloned in Escherichia coli as a bacterial artificial chromosome (BAC).BAC vector sequences were introduced into the US2 locus of the MDV genome by homologous recombination.The viral DNA containing the BAC vector was used to transform Escherichia coli strain of DH10B.Then the recombinant virus was successfully rescued by transfection of the recombinant BAC DNA into primary chicken embryo fibroblast (CEF).This BAC viral clone was named bac-GX0101.When the reconstituted virus was inoculated into 1-day-old birds,visceral tumors could be detected as early as 62 d post infection.There was no difference in growth ability and pathogenicity to birds between the BAC derived virus and its parental virus.The BAC derived virus maintained its oncogenicity and immunosuppressive effects.In conclusion,the complete genome of GX0101 strain was successfully cloned into BAC and the infectious clone was rescued.With the powerful BAC manipulation system,the infectious clone will provide a useful tool for further understanding the functional roles of the inserted REV-LTR sequence in the GX0101 strain of MDV.

  11. Recent CR1 non-LTR retrotransposon activity in coscoroba reveals an insertion site preference

    Directory of Open Access Journals (Sweden)

    Quinn Thomas W

    2008-11-01

    Full Text Available Abstract Background Chicken repeat 1 (CR1 is a taxonomically widespread non-LTR retrotransposon. Insertion site bias, or lack thereof, has not been demonstrated for CR1. Recent CR1 retrotranspositions were used to examine flanking regions for GC content and nucleotide bias at the insertion site. Results Elucidation of the exact octomer repeat sequence (TTCTGTGA allowed for the identification of younger insertion events. The number of octomer repeats associated with a CR1 element increases after insertion with CR1s having one octomer being youngest. These young CR1s are flanked by regions of low GC content (38%. Furthermore, a bias for specific bases within the first four positions at the site of insertion was revealed. Conclusion This study focused on those loci where the insertion event has been most recent, as this would tend to minimize noise introduced by post-integration mutational events. Our data suggest that CR1 is not inserting into regions of higher GC content within the coscoroba genome; but rather, preferentially inserting into regions of lower GC content. Furthermore, there appears to be a base preference (TTCT for the insertion site. The results of this study increase the current level of understanding regarding the elusive CR1 non-LTR retrotransposon.

  12. Identification and molecular characterization of LTR and LINE retrotransposable elements in Fagus sylvatica L.

    Directory of Open Access Journals (Sweden)

    Emiliani G

    2009-06-01

    Full Text Available Retrotransposable elements are important and peculiar genetic components derived from ancient retrovirus insertion inside plants genome. Their ability to move and/or replicate inside the genome is an important evolutionary force, responsible for the increase of genome size and the regulation of gene expression. Retrotransposable elements are well characterized in model or crop species like Arabidopsis thaliana and Oryza sativa, but are poorly known in forest tree species. In this paper the molecular identification of retrotransposable elements in Fagus sylvatica L. is reported. Two retrotransposons, belonging to the two major classes of LTR and non-LTR elements, were characterized trough a SCAR (Sequence Characterized Amplified Region strategy. The analysis demonstrated the presence of multiple copies of retrotransposable elements inside the genome of beech, in accordance with the viral quasi-species theory of retrotransposon evolution. The cloning and sequencing of amplification products and a Cleaved Amplified Polymorphisms (CAPs approach on the identified retrotransposons, showed a high level of diversity among the multiple copies of both elements. The identification of retrotransposable elements in forest trees represents an important step toward the understanding of mechanisms of genome evolution. Furthermore, the high polymorphism of retrotransposable elements can represent a starting point for the development of new genetic variability markers.

  13. Diaspora, a large family of Ty3-gypsy retrotransposons in Glycine max, is an envelope-less member of an endogenous plant retrovirus lineage

    Directory of Open Access Journals (Sweden)

    Das Arpita

    2005-05-01

    Full Text Available Abstract Background The chromosomes of higher plants are littered with retrotransposons that, in many cases, constitute as much as 80% of plant genomes. Long terminal repeat retrotransposons have been especially successful colonizers of the chromosomes of higher plants and examinations of their function, evolution, and dispersal are essential to understanding the evolution of eukaryotic genomes. In soybean, several families of retrotransposons have been identified, including at least two that, by virtue of the presence of an envelope-like gene, may constitute endogenous retroviruses. However, most elements are highly degenerate and are often sequestered in regions of the genome that sequencing projects initially shun. In addition, finding potentially functional copies from genomic DNA is rare. This study provides a mechanism to surmount these issues to generate a consensus sequence that can then be functionally and phylogenetically evaluated. Results Diaspora is a multicopy member of the Ty3-gypsy-like family of LTR retrotransposons and comprises at least 0.5% of the soybean genome. Although the Diaspora family is highly degenerate, and with the exception of this report, is not represented in the Genbank nr database, a full-length consensus sequence was generated from short overlapping sequences using a combination of experimental and in silico methods. Diaspora is 11,737 bp in length and contains a single 1892-codon ORF that encodes a gag-pol polyprotein. Phylogenetic analysis indicates that it is closely related to Athila and Calypso retroelements from Arabidopsis and soybean, respectively. These in turn form the framework of an endogenous retrovirus lineage whose members possess an envelope-like gene. Diaspora appears to lack any trace of this coding region. Conclusion A combination of empirical sequencing and retrieval of unannotated Genome Survey Sequence database entries was successfully used to construct a full-length representative of

  14. 'Caravan wives' and 'decent girls': Gypsy-Traveller women's perceptions of gender, culture and morality in the North of England.

    Science.gov (United States)

    Casey, Rionach

    2014-01-01

    This paper examines the beliefs and practices that constitute gender among Gypsy-Traveller women and then attempts to discern the consequences that flow from these. It analyses gender ideology and expectations among women and the shared investment in the moral identity attached to being a good Gypsy-Traveller wife. The paper argues that 'Gypsy-Traveller woman' cannot be understood as an identity that stands apart from gender and racial oppression. It is within this context that the tension between change and permanence in gender relations is played out. It argues that the maintenance of cultural taboos embodied and symbolised in the surveillance of womens' bodies is an important issue that problematises the construction of Gypsy-Traveller women. It posits that the appeal to morality may represent as much an avoidance of anxiety as a defence of marked gendered divisions within Gypsy-Traveller society. The paper suggests that the demands of cultural survival play a significant role in framing the degree to which women are willing or able to challenge the status quo.

  15. Progress of Researching Chitinase of Gypsy Moth%舞毒蛾几丁质酶的研究进展

    Institute of Scientific and Technical Information of China (English)

    王绥冬; 宋志芳; 张常; 李瑶; 范晓军

    2012-01-01

    The gypsy moth that is a worldwide forestry pests are distributed in China's provinces. Gypsy moth larvae eat the leaves of fi-uit trees, willow trees, which have serious harm to forestry safety. The article was described the hazards of the gypsy moth, Chitinase relevant knowledge and research status of the gypsy moth Chitinase, and expounded the prospect of application of Chitinase to combat gypsy moth.%舞毒蛾是一种世界性林业害虫,在我国各省均有分布。舞毒蛾幼虫主要蚕食果树、柳树等树木的树叶.严重危害林业安全。文章介绍了舞毒蛾的危害、几丁质酶的相关知识及舞毒蛾几丁质酶的研究现状.并对应用几丁质酶防治舞毒蛾的前景进行了论述。

  16. Design of Critical Control Systems for Non-Minimum Phase Plants via LTR Technique

    Science.gov (United States)

    Ishihara, Tadashi; Ono, Takahiko

    An application of the loop transfer recovery (LTR) technique to critical control systems design is proposed for non-minimum phase plants. The controller structure is chosen as the Davison type integral controller with the Kalman filter. First, a critical control system is designed on the assumption that the state of the minimum phase part of the plant can be used for the feedback. A quadratic performance index with tuning parameters is used for determining the partial state feedback gain matrix. Second, the Kalman filter gain matrix is determined such that the output feedback controller performs as in the partial state feedback controller. The formal partial loop recovery procedure using the Riccati equation is adopted for this purpose. The proposed design method requires much simpler numerical search than the conventional one-step approach. An illustrative design example is presented.

  17. The cellular protein hnRNP A2/B1 enhances HIV-1 transcription by unfolding LTR promoter G-quadruplexes

    Science.gov (United States)

    Scalabrin, Matteo; Frasson, Ilaria; Ruggiero, Emanuela; Perrone, Rosalba; Tosoni, Elena; Lago, Sara; Tassinari, Martina; Palù, Giorgio; Richter, Sara N.

    2017-01-01

    G-quadruplexes are four-stranded conformations of nucleic acids that act as cellular epigenetic regulators. A dynamic G-quadruplex forming region in the HIV-1 LTR promoter represses HIV-1 transcription when in the folded conformation. This activity is enhanced by nucleolin, which induces and stabilizes the HIV-1 LTR G-quadruplexes. In this work by a combined pull-down/mass spectrometry approach, we consistently found hnRNP A2/B1 as an additional LTR-G-quadruplex interacting protein. Surface plasmon resonance confirmed G-quadruplex specificity over linear sequences and fluorescence resonance energy transfer analysis indicated that hnRNP A2/B1 is able to efficiently unfold the LTR G-quadruplexes. Evaluation of the thermal stability of the LTR G-quadruplexes in different-length oligonucleotides showed that the protein is fit to be most active in the LTR full-length environment. When hnRNP A2/B1 was silenced in cells, LTR activity decreased, indicating that the protein acts as a HIV-1 transcription activator. Our data highlight a tightly regulated control of transcription based on G-quadruplex folding/unfolding, which depends on interacting cellular proteins. These findings provide a deeper understanding of the viral transcription mechanism and may pave the way to the development of drugs effective against the integrated HIV-1, present both in actively and latently infected cells.

  18. The variances of Sp1 and NF-κB elements correlate with the greater capacity of Chinese HIV-1 B′-LTR for driving gene expression

    Science.gov (United States)

    Qu, Di; Li, Chuan; Sang, Feng; Li, Qiang; Jiang, Zhi-Qiang; Xu, Li-Ran; Guo, Hui-Jun; Zhang, Chiyu; Wang, Jian-Hua

    2016-01-01

    The 5′ end of HIV-1 long terminal repeat (LTR) serves as a promoter that plays an essential role in driving viral gene transcription. Manipulation of HIV-1 LTR provides a potential therapeutic strategy for suppressing viral gene expression or excising integrated provirus. Subtype-specific genetic diversity in the LTR region has been observed. The minor variance of LTR, particularly in the transcription factor binding sites, can have a profound impact on its activity. However, the LTR profiles from major endemic Chinese subtypes are not well characterized. Here, by characterizing the sequences and functions of LTRs from endemic Chinese HIV-1 subtypes, we showed that nucleotide variances of Sp1 core promoter and NF-κB element are associated with varied LTR capacity for driving viral gene transcription. The greater responsiveness of Chinese HIV-1 B′-LTR for driving viral gene transcription upon stimulation is associated with an increased level of viral reactivation. Moreover, we demonstrated that the introduction of CRISPR/dead Cas9 targeting Sp1 or NF-κB element suppressed viral gene expression. Taken together, our study characterized LTRs from endemic HIV-1 subtypes in China and suggests a potential target for the suppression of viral gene expression and a novel strategy that facilitates the accomplishment of a functional cure. PMID:27698388

  19. Gypsy moth basic knowledge and its prevention%舞毒蛾基本知识及其防治

    Institute of Scientific and Technical Information of China (English)

    李晓芬

    2012-01-01

    舞毒蛾属鳞翅目夜蛾总科毒蛾科舞毒蛾属。是一种食性广谱的食叶害虫,本文主要介绍了它的生活史、主要形态特征和主要防治措施。%gypsy moth genus Lepidoptera Lymantriidae gypsy moth genus of moth. Is a kind of feeding broad leaf eating insects, this paper mainly introduces its life history, the main characteristics and the main preventive measures.

  20. Interpretation of gypsy moth frontal advance using meteorology in a conditional algorithm.

    Science.gov (United States)

    Frank, K L; Tobin, P C; Thistle, H W; Kalkstein, Laurence S

    2013-05-01

    The gypsy moth, Lymantria dispar, is a non-native species that continues to invade areas in North America. It spreads generally through stratified dispersal where local growth and diffusive spread are coupled with long-distance jumps ahead of the leading edge. Long-distance jumps due to anthropogenic movement of life stages is a well-documented spread mechanism. Another mechanism is the atmospheric transport of early instars and adult males, believed to occur over short distances. However, empirical gypsy moth population data continue to support the possibility of alternative methods of long-range dispersal. Such dispersal events seemed to have occurred in the mid- to late-1990s with spread across Lake Michigan to Wisconsin. Such dispersal would be against the prevailing wind flow for the area and would have crossed a significant physical barrier (Lake Michigan). The climatology of the region shows that vigorous cyclones can result in strong easterly winds in the area at the time when early instars are present. It is hypothesized that these storms would enable individuals to be blown across the Lake and explain the appearance of new population centers observed at several locations on the western shore of Lake Michigan nearly simultaneously. A synoptic climatology model coupled with population dynamics data from the area was parameterized to show an association between transport events and population spread from 1996 to 2007. This work highlights the importance of atmospheric transport events relative to the invasion dynamics of the gypsy moth, and serves as a model for understanding this mechanism of spread in other related biological invasions.

  1. Effects of pathogen exposure on life history variation in the gypsy moth (Lymantria dispar)

    Science.gov (United States)

    Páez, David J.; Fleming-Davies, Arietta E.; Dwyer, Greg

    2015-01-01

    Investment in host defenses against pathogens may lead to tradeoffs with host fecundity. When such tradeoffs arise from genetic correlations, rates of phenotypic change by natural selection may be affected. However, genetic correlations between host survival and fecundity are rarely quantified. To understand tradeoffs between immune responses to baculovirus exposure and fecundity in the gypsy moth (Lymantria dispar), we estimated genetic correlations between survival probability and traits related to fecundity, such as pupal weight. In addition, we tested whether different virus isolates have different effects on male and female pupal weight. To estimate genetic correlations, we exposed individuals of known relatedness to a single baculovirus isolate. To then evaluate the effect of virus isolate on pupal weight, we exposed a single gypsy moth strain to 16 baculovirus isolates. We found a negative genetic correlation between survival and pupal weight. In addition, virus exposure caused late-pupating females to be identical in weight to males, whereas unexposed females were 2–3 times as large as unexposed males. Finally, we found that female pupal weight is a quadratic function of host mortality across virus isolates, which is likely due to tradeoffs and compensatory growth processes acting at high and low mortality levels, respectively. Overall, our results suggest that fecundity costs may strongly affect the response to selection for disease resistance. In nature, baculoviruses contribute to the regulation of gypsy moth outbreaks, as pathogens often do in forest-defoliating insects. We therefore argue that tradeoffs between host life-history traits may help explain outbreak dynamics. PMID:26201381

  2. Chemical modulators of the innate immune response alter gypsy moth larval susceptibility to Bacillus thuringiensis

    Directory of Open Access Journals (Sweden)

    Broderick Nichole A

    2010-04-01

    Full Text Available Abstract Background The gut comprises an essential barrier that protects both invertebrate and vertebrate animals from invasion by microorganisms. Disruption of the balanced relationship between indigenous gut microbiota and their host can result in gut bacteria eliciting host responses similar to those caused by invasive pathogens. For example, ingestion of Bacillus thuringiensis by larvae of some species of susceptible Lepidoptera can result in normally benign enteric bacteria exerting pathogenic effects. Results We explored the potential role of the insect immune response in mortality caused by B. thuringiensis in conjunction with gut bacteria. Two lines of evidence support such a role. First, ingestion of B. thuringiensis by gypsy moth larvae led to the depletion of their hemocytes. Second, pharmacological agents that are known to modulate innate immune responses of invertebrates and vertebrates altered larval mortality induced by B. thuringiensis. Specifically, Gram-negative peptidoglycan pre-treated with lysozyme accelerated B. thuringiensis-induced killing of larvae previously made less susceptible due to treatment with antibiotics. Conversely, several inhibitors of the innate immune response (eicosanoid inhibitors and antioxidants increased the host's survival time following ingestion of B. thuringiensis. Conclusions This study demonstrates that B. thuringiensis infection provokes changes in the cellular immune response of gypsy moth larvae. The effects of chemicals known to modulate the innate immune response of many invertebrates and vertebrates, including Lepidoptera, also indicate a role of this response in B. thuringiensis killing. Interactions among B. thuringiensis toxin, enteric bacteria, and aspects of the gypsy moth immune response may provide a novel model to decipher mechanisms of sepsis associated with bacteria of gut origin.

  3. 吉普赛风情狂欢夜——聆听《Gypsy Swing》

    Institute of Scientific and Technical Information of China (English)

    张郭蓉

    2012-01-01

    Harmonious Wail成立于1987年,是由辛姆斯.戴兰尼.伯特洛夫带领的一支来自威斯康辛州的美国爵士乐队.《Gypsy Swing》是Harmonious Wail最新的一张唱片,发于2003年9月23日.由Naxos World Music出品.Harmonious是和谐的意思,这里是指将吉普赛音乐与美国本土爵士乐完美的结合成吉普赛爵士乐.

  4. A Multiplex Real-Time PCR Assay for Screening Gypsy Moths (Lepidoptera: Erebidae) in the United States for Evidence of an Asian Genotype.

    Science.gov (United States)

    Islam, M S; Barr, N B; Braswell, W E; Martinez, M; Ledezma, L A; Molongoski, J; Mastro, V; Schuenzel, E L

    2015-10-01

    European gypsy moth populations (Lymantria dispar L.) are well established and a proven destructive force in hardwood trees throughout the United States and Canada. Introduction of the exotic Asian gypsy moth into North America would be even more impactful, as Asian gypsy moth populations have wider host ranges, and are capable of naturally dispersing more rapidly due to female flight ability. To support early detection and exclusion of Asian gypsy moth, the U.S. Department of Agriculture (USDA) uses molecular techniques to screen moths trapped in North America for evidence of common Asian genotype. In order to strengthen U.S. domestic capacity to screen moths quickly and efficiently, we report a real-time PCR assay for this pest. A probe system using TaqMan 5' nuclease chemistry is reported for detection of an allele associated with common Asian gypsy moth genotypes. The targeted allele is located at the nuclear FS1 locus currently used by the USDA in conventional PCR tests to screen for evidence of Asian gypsy moth introductions or introgression. The diagnostic probe is successfully multiplexed with a conserved 18S probe system to detect reaction failure due to poor sample quality or quantity. The specificity, sensitivity, and repeatability of the FS1-18S multiplex real-time PCR assay were tested on laboratory-reared and field-collected moths to demonstrate diagnostic utility. Implications of the new assay as a screening tool for evidence of Asian gypsy moth introgression and introduction are discussed.

  5. SUV39H1 interacts with HTLV-1 Tax and abrogates Tax transactivation of HTLV-1 LTR

    Directory of Open Access Journals (Sweden)

    Tanaka Yuetsu

    2006-01-01

    Full Text Available Abstract Background Tax is the oncoprotein of HTLV-1 which deregulates signal transduction pathways, transcription of genes and cell cycle regulation of host cells. Transacting function of Tax is mainly mediated by its protein-protein interactions with host cellular factors. As to Tax-mediated regulation of gene expression of HTLV-1 and cellular genes, Tax was shown to regulate histone acetylation through its physical interaction with histone acetylases and deacetylases. However, functional interaction of Tax with histone methyltransferases (HMTase has not been studied. Here we examined the ability of Tax to interact with a histone methyltransferase SUV39H1 that methylates histone H3 lysine 9 (H3K9 and represses transcription of genes, and studied the functional effects of the interaction on HTLV-1 gene expression. Results Tax was shown to interact with SUV39H1 in vitro, and the interaction is largely dependent on the C-terminal half of SUV39H1 containing the SET domain. Tax does not affect the methyltransferase activity of SUV39H1 but tethers SUV39H1 to a Tax containing complex in the nuclei. In reporter gene assays, co-expression of SUV39H1 represses Tax transactivation of HTLV-1 LTR promoter activity, which was dependent on the methyltransferase activity of SUV39H1. Furthermore, SUV39H1 expression is induced along with Tax in JPX9 cells. Chromatin immunoprecipitation (ChIP analysis shows localization of SUV39H1 on the LTR after Tax induction, but not in the absence of Tax induction, in JPX9 transformants retaining HTLV-1-Luc plasmid. Immunoblotting shows higher levels of SUV39H1 expression in HTLV-1 transformed and latently infected cell lines. Conclusion Our study revealed for the first time the interaction between Tax and SUV39H1 and apparent tethering of SUV39H1 by Tax to the HTLV-1 LTR. It is speculated that Tax-mediated tethering of SUV39H1 to the LTR and induction of the repressive histone modification on the chromatin through H3 K9

  6. The Juan non-LTR retrotransposon in mosquitoes: genomic impact, vertical transmission and indications of recent and widespread activity

    Directory of Open Access Journals (Sweden)

    Tu Zhijian

    2007-07-01

    Full Text Available Abstract Background In contrast to DNA-mediated transposable elements (TEs, retrotransposons, particularly non-long terminal repeat retrotransposons (non-LTRs, are generally considered to have a much lower propensity towards horizontal transfer. Detailed studies on site-specific non-LTR families have demonstrated strict vertical transmission. More studies are needed with non-site-specific non-LTR families to determine whether strict vertical transmission is a phenomenon related to site specificity or a more general characteristic of all non-LTRs. Juan is a Jockey clade non-LTR retrotransposon first discovered in mosquitoes that is widely distributed in the mosquito family Culicidae. Being a non-site specific non-LTR, Juan offers an opportunity to further investigate the hypothesis that non-LTRs are genomic elements that are primarily vertically transmitted. Results Systematic analysis of the ~1.3 Gbp Aedes aegypti (Ae. aegypti genome sequence suggests that Juan-A is the only Juan-type non-LTR in Aedes aegypti. Juan-A is highly reiterated and comprises approximately 3% of the genome. Using minimum cutoffs of 90% length and 70% nucleotide (nt identity, 663 copies were found by BLAST using the published Juan-A sequence as the query. All 663 copies are at least 95% identical to Juan-A, while 378 of these copies are 99% identical to Juan-A, indicating that the Juan-A family has been transposing recently in evolutionary history. Using the 0.34 Kb 5' UTR as the query, over 2000 copies were identified that may contain internal promoters, leading to questions on the genomic impact of Juan-A. Juan sequences were obtained by PCR, library screening, and database searches for 18 mosquito species of six genera including Aedes, Ochlerotatus, Psorophora, Culex, Deinocerites, and Wyeomyia. Comparison of host and Juan phylogenies shows overall congruence with few exceptions. Conclusion Juan-A is a major genomic component in Ae. aegypti and it has been

  7. Transcriptome of the Lymantria dispar (gypsy moth larval midgut in response to infection by Bacillus thuringiensis.

    Directory of Open Access Journals (Sweden)

    Michael E Sparks

    Full Text Available Transcriptomic profiles of the serious lepidopteran insect pest Lymantria dispar (gypsy moth were characterized in the larval midgut in response to infection by Bacillus thuringiensis kurstaki, a biopesticide commonly used for its control. RNA-Seq approaches were used to define a set of 49,613 assembled transcript sequences, of which 838, 1,248 and 3,305 were respectively partitioned into high-, mid- and low-quality tiers on the basis of homology information. Digital gene expression profiles suggested genes differentially expressed at 24 hours post infection, and qRT-PCR analyses were performed for verification. The differentially expressed genes primarily associated with digestive function, including α-amylase, lipase and carboxypeptidase; immune response, including C-type lectin 4; developmental genes such as arylphorin; as well as a variety of binding proteins: cellular retinoic acid binding protein (lipid-binding, insulin-related peptide binding protein (protein-binding and ovary C/EBPg transcription factor (nucleic acid-binding. This is the first study conducted to specifically investigate gypsy moth response to a bacterial infection challenge using large-scale sequencing technologies, and the results highlight important genes that could be involved in biopesticide resistance development or could serve as targets for biologically-based control mechanisms of this insect pest.

  8. Genetic characterization of the gypsy moth from China (Lepidoptera, Lymantriidae using inter simple sequence repeats markers.

    Directory of Open Access Journals (Sweden)

    Fang Chen

    Full Text Available This study provides the first genetic characterization of the gypsy moth from China (Lymantriadispar, one of the most recognized pests of forests and ornamental trees in the world. We assessed genetic diversity and structure in eight geographic populations of gypsy moths from China using five polymorphic Inter simple sequence repeat markers, which produced reproducible banding patterns. We observed 102 polymorphic loci across the 176 individuals sampled. Overall genetic diversity (Nei's, H was 0.2357, while the mean genetic diversity within geographic populations was 0.1845 ± 0.0150. The observed genetic distance among the eight populations ranged from 0.0432 to 0.1034. Clustering analysis (using an unweighted pair-group method with arithmetic mean and multidimensional scaling, revealed strong concordance between the strength of genetic relationships among populations and their geographic proximity. Analysis of molecular variance demonstrated that 25.43% of the total variability (F ST = 0.2543, P < 0.001 was attributable to variation among geographic populations. The results of our analyses investigating the degree of polymorphism, genetic diversity (Nei's and Shannon and genetic structure, suggest that individuals from Hebei may be better able to adapt to different environments and to disperse to new habitats. This study provides crucial genetic information needed to assess the distribution and population dynamics of this important pest species of global concern.

  9. Synthesis and biological activity of conformationally restricted gypsy moth pheromone mimics.

    Science.gov (United States)

    Chen, Hao; Gong, Yongmei; Gries, Regine M; Plettner, Erika

    2010-04-15

    The design and synthesis of a series of conformationally constrained mimics of gypsy moth sex pheromone, (+)-disparlure (7R,8S)-2-methyl-7,8-epoxyoctadecane, are described. The core structure of the mimics is derived from 5-(2'-hydroxyethyl)cyclopent-2-en-1-ol. Substituent optimization of the analogs was accomplished through the synthesis of mini-libraries and pure individual compounds, followed by electrophysiological experiments with male gypsy moth antennae. The electroantennogram results show that the analogs elicited weak to no antennal responses themselves. There was a clear structure-activity pattern for odorant activity, with ethyl substituents being best. Further, when puffed simultaneously with the pheromone, some of the compounds gave a significant enhancement of the antennal depolarization, indicating an additive or synergistic effect. A pure pheromone stimulus following a mixed compound/pheromone stimulus was generally not affected, with two exceptions: one compound enhanced and another inhibited a subsequent stimulus. The compounds also prolonged the stimulation of the antenna, which manifested itself in widened electroantennogram peaks. We tested the hypothesis that this prolonged stimulation may be due to the stabilization of a particular conformer of the pheromone-binding protein (PBP). Compounds that caused PBP2 to adopt a similar conformation than in the presence of pheromone also caused peak widening. This was not the case with PBP1.

  10. Effects of tannic acid on trypsin and leucine aminopeptidase activities in gypsy moth larval midgut

    Directory of Open Access Journals (Sweden)

    Mrdaković Marija

    2013-01-01

    Full Text Available The effects of allelochemical stress on genetic variations in the specific activities of gypsy moth digestive enzymes (trypsin and leucine aminopeptidase and relative midgut mass (indirect measure of food consumption, as well as variability in their plasticity, were investigated in fifth instar gypsy moths originating from two populations with different trophic adaptations (oak and locust-tree forests. Thirty-two full-sib families from the Quercus population and twenty-six full-sib families from the Robinia population were reared on an artificial diet with or without supplementation with tannic acid. Between population differences were observed as higher average specific activity of trypsin and relative midgut mass in larvae from the Robinia population. Significant broad-sense heritabilities were observed for the specific activity of trypsin in the control state, and for specific activity of leucine aminopeptidase in a stressful environment. Significantly lower heritability for relative midgut mass was recorded in larvae from the Robinia population reared under stressful conditions. Significant variability of trypsin plasticity in larvae from both populations and significant variability of leucine aminopeptidase plasticity in larvae from the Robinia population point to the potential for the evolution of enzyme adaptive plastic responses to the presence of stressor. Non-significant across-environment genetic correlations do not represent a constraint for the evolution of enzyme plasticity. [Projekat Ministarstva nauke Republike Srbije, br. 173027

  11. Quantitative Analysis of Human T-Lymphotropic Virus Type 1 (HTLV-1) Infection Using Co-Culture with Jurkat LTR-Luciferase or Jurkat LTR-GFP Reporter Cells.

    Science.gov (United States)

    Alais, Sandrine; Dutartre, Hélène; Mahieux, Renaud

    2017-01-01

    Unlike HIV-1, HTLV-1 viral transmission requires cell-to-cell contacts, while cell-free virions are poorly infectious and almost absent from body fluids. Though the virus uses three nonexclusive mechanisms to infect new target cells: (1) MTOC polarization followed by formation of a virological synapse and viral transfer into a synaptic cleft, (2) genesis of a viral biofilm and its transfer of embedded viruses, or (3) HTLV-1 transmission using conduits. The Tax transactivator and the p8 viral proteins are involved in virological synapse and nanotube formation respectively.HTLV-1 transcription from the viral promoter (i.e., LTR) requires the Tax protein that is absent from the viral particle and is expressed after productive infection. The present chapter focuses on a series of protocols used to quantify HTLV-1 de novo infection of target cells. These techniques do not discriminate between the different modes of transmission, but allow an accurate measure of productive infection. We used cell lines that are stably transfected with LTR-GFP or LTR-luciferase plasmids and quantified Green Fluorescent Protein expression or luciferase activity, since both of them reflect Tax expression.

  12. 76 FR 28948 - Notice of Request for Extension of Approval of an Information Collection; Importation of Gypsy...

    Science.gov (United States)

    2011-05-19

    ... shippers of Christmas trees, shrubs, logs, pulpwood, and other articles from gypsy moth-infested provinces...) imported from Canada. These regulated articles are: Trees without roots (e.g., Christmas trees), trees with roots, shrubs with roots and persistent woody stems, logs and pulpwood with back attached,...

  13. [Molecular evolution of mobile elements of the gypsy group: a homolog of the gag gene in Drosophila].

    Science.gov (United States)

    Nefedova, L N; Kim, A I

    2009-01-01

    Retrotransposons of the gypsy group of Drosophila melanogaster that are structurally similar to retroviruses of vertebrates occupy an important place among retroelements of eukaryotes. The infectious abilities of some retrotransposons of this group (gypsy, ZAM, and Idefix) have been demonstrated experimentally, and therefore they are true retroviruses. It is supposed that retrotransposons can evolve acquiring new components, the sources of which remain to be elucidated. In this work, the CG4680 gene (Gag related protein, Grp) homologous to gag of retrotransposons of the gypsy group has been identified in the genome of D. melanogaster and characterized. The Grp gene product has a highly conserved structure in different species of the Drosophilidae family and is under of stabilizing selection, which suggests its important genomic function in Drosophila. In view of the earlier data, it can be concluded that homologous genes of all components of gypsy retrotransposons are present in the Drosophila genome. These genes can be both precursors and products of domestication of retrovirus genes.

  14. Culture and the school: The degree of educational integration of Roma and Gypsies in the Peloponnese region of Greece

    Science.gov (United States)

    Kiprianos, Pandelis; Daskalaki, Ivi; Stamelos, Georgios B.

    2012-10-01

    This article examines the degree of integration of Roma and Gypsy children in formal education in the Peloponnese region of Greece. It is based on field research conducted by the University of Patras during the school year 2006/07 within the framework of the Greek Ministry of Education's "Integration of Roma children in school" programme, funded by the European Union. Despite governmental incentives for poor families to enrol their school-aged children, school attendance of Roma and Gypsy children was found to decline from primary year one to primary year six, with hardly any of them entering secondary school at all. Besides looking at school attendance figures and Roma and Gypsy children's proficiency in reading, writing and numeracy, this paper also considers gender, family composition, living conditions and economic situation, as well as culturally constructed perceptions of childhood and a person's life cycle. The aim of this article is to highlight the contradictions and ambiguities involved in the process of incorporating Roma and Gypsy children in formal education, and to evaluate their school performance and assess their academic choices.

  15. Detoxication activity in the gypsy moth: Effects of host CO[sub 2] and NO[sub 3][sup [minus

    Energy Technology Data Exchange (ETDEWEB)

    Lindroth, R.L.; Jung, S.M.; Feuker, A.M. (Univ. of Wisconsin, Madison (United States))

    1993-02-01

    The authors investigated the effects of host species and resource (carbon dioxide, nitrate) availability on activity of detoxication enzymes in the gypsy moth, Lymantria dispar. Larvae were fed foliage from quaking aspen or sugar maple grown under ambient or elevated atmospheric CO[sub 2], with low or high soil NO[sub 3][sup [minus

  16. Multiple invasions of Gypsy and Micropia retroelements in genus Zaprionus and melanogaster subgroup of the genus Drosophila

    Directory of Open Access Journals (Sweden)

    Carareto Claudia MA

    2009-12-01

    Full Text Available Abstract Background The Zaprionus genus shares evolutionary features with the melanogaster subgroup, such as space and time of origin. Although little information about the transposable element content in the Zaprionus genus had been accumulated, some of their elements appear to be more closely related with those of the melanogaster subgroup, indicating that these two groups of species were involved in horizontal transfer events during their evolution. Among these elements, the Gypsy and the Micropia retroelements were chosen for screening in seven species of the two Zaprionus subgenera, Anaprionus and Zaprionus. Results Screening allowed the identification of diverse Gypsy and Micropia retroelements only in species of the Zaprionus subgenus, showing that they are transcriptionally active in the sampled species. The sequences of each retroelement were closely related to those of the melanogaster species subgroup, and the most parsimonious hypothesis would be that 15 horizontal transfer events shaped their evolution. The Gypsy retroelement of the melanogaster subgroup probably invaded the Zaprionus genomes about 11 MYA. In contrast, the Micropia retroelement may have been introduced into the Zaprionus subgenus and the melanogaster subgroup from an unknown donor more recently (~3 MYA. Conclusion Gypsy and Micropia of Zaprionus and melanogaster species share similar evolutionary patterns. The sharing of evolutionary, ecological and ethological features probably allowed these species to pass through a permissive period of transposable element invasion, explaining the proposed waves of horizontal transfers.

  17. Culture and the School: The Degree of Educational Integration of Roma and Gypsies in the Peloponnese Region of Greece

    Science.gov (United States)

    Kiprianos, Pandelis; Daskalaki, Ivi; Stamelos, Georgios B.

    2012-01-01

    This article examines the degree of integration of Roma and Gypsy children in formal education in the Peloponnese region of Greece. It is based on field research conducted by the University of Patras during the school year 2006/07 within the framework of the Greek Ministry of Education's "Integration of Roma children in school"…

  18. Vertical evolution and horizontal transfer of CR1 non-LTR retrotransposons and Tc1/mariner DNA transposons in Lepidoptera species.

    Science.gov (United States)

    Sormacheva, Irina; Smyshlyaev, Georgiy; Mayorov, Vladimir; Blinov, Alexander; Novikov, Anton; Novikova, Olga

    2012-12-01

    Horizontal transfer (HT) is a complex phenomenon usually used as an explanation of phylogenetic inconsistence, which cannot be interpreted in terms of vertical evolution. Most examples of HT of eukaryotic genes involve transposable elements. An intriguing feature of HT is that its frequency differs among transposable elements classes. Although HT is well known for DNA transposons and long terminal repeat (LTR) retrotransposons, non-LTR retrotransposons rarely undergo HT, and their phylogenies are largely congruent to those of their hosts. Previously, we described HT of CR1-like non-LTR retrotransposons between butterflies (Maculinea) and moths (Bombyx), which occurred less than 5 million years ago (Novikova O, Sliwinska E, Fet V, Settele J, Blinov A, Woyciechowski M. 2007. CR1 clade of non-LTR retrotransposons from Maculinea butterflies (Lepidoptera: Lycaenidae): evidence for recent horizontal transmission. BMC Evol Biol. 7:93). In this study, we continued to explore the diversity of CR1 non-LTR retrotransposons among lepidopterans providing additional evidences to support HT hypothesis. We also hypothesized that DNA transposons could be involved in HT of non-LTR retrotransposons. Thus, we performed analysis of one of the groups of DNA transposons, mariner-like DNA elements, as potential vectors for HT of non-LTR retrotransposons. Our results demonstrate multiple HTs between Maculinea and Bombyx genera. Although we did not find strong evidence for our hypothesis of the involvement of DNA transposons in HT of non-LTR retrotransposons, we demonstrated that recurrent and/or simultaneous flow of TEs took place between distantly related moths and butterflies.

  19. Cognitive Function Related to the Sirh11/Zcchc16 Gene Acquired from an LTR Retrotransposon in Eutherians

    OpenAIRE

    Masahito Irie; Masanobu Yoshikawa; Ryuichi Ono; Hirotaka Iwafune; Tamio Furuse; Ikuko Yamada; Shigeharu Wakana; Yui Yamashita; Takaya Abe; Fumitoshi Ishino; Tomoko Kaneko-Ishino

    2015-01-01

    Author Summary Retrotransposon-derived DNA sequences occupy approximately 40% of the mammalian genome, compared with only 1.5% of protein coding genes. They have been commonly considered “junk DNA” and even potentially harmful for host organisms. However, a series of knockout (KO) mouse analyses demonstrated that at least some of the LTR retrotransposon- and retrovirus-derived sequences play essential roles in the current mammalian developmental system as endogenous genes, such as Peg10, Peg1...

  20. Ancient Origin of the U2 Small Nuclear RNA Gene-Targeting Non-LTR Retrotransposons Utopia.

    Science.gov (United States)

    Kojima, Kenji K; Jurka, Jerzy

    2015-01-01

    Most non-long terminal repeat (non-LTR) retrotransposons encoding a restriction-like endonuclease show target-specific integration into repetitive sequences such as ribosomal RNA genes and microsatellites. However, only a few target-specific lineages of non-LTR retrotransposons are distributed widely and no lineage is found across the eukaryotic kingdoms. Here we report the most widely distributed lineage of target sequence-specific non-LTR retrotransposons, designated Utopia. Utopia is found in three supergroups of eukaryotes: Amoebozoa, SAR, and Opisthokonta. Utopia is inserted into a specific site of U2 small nuclear RNA genes with different strength of specificity for each family. Utopia families from oomycetes and wasps show strong target specificity while only a small number of Utopia copies from reptiles are flanked with U2 snRNA genes. Oomycete Utopia families contain an "archaeal" RNase H domain upstream of reverse transcriptase (RT), which likely originated from a plant RNase H gene. Analysis of Utopia from oomycetes indicates that multiple lineages of Utopia have been maintained inside of U2 genes with few copy numbers. Phylogenetic analysis of RT suggests the monophyly of Utopia, and it likely dates back to the early evolution of eukaryotes.

  1. Evidence of extensive non-allelic gene conversion among LTR elements in the human genome

    Science.gov (United States)

    Trombetta, Beniamino; Fantini, Gloria; D’Atanasio, Eugenia; Sellitto, Daniele; Cruciani, Fulvio

    2016-01-01

    Long Terminal Repeats (LTRs) are nearly identical DNA sequences found at either end of Human Endogenous Retroviruses (HERVs). The high sequence similarity that exists among different LTRs suggests they could be substrate of ectopic gene conversion events. To understand the extent to which gene conversion occurs and to gain new insights into the evolutionary history of these elements in humans, we performed an intra-species phylogenetic study of 52 LTRs on different unrelated Y chromosomes. From this analysis, we obtained direct evidence that demonstrates the occurrence of ectopic gene conversion in several LTRs, with donor sequences located on both sex chromosomes and autosomes. We also found that some of these elements are characterized by an extremely high density of polymorphisms, showing one of the highest nucleotide diversities in the human genome, as well as a complex patchwork of sequences derived from different LTRs. Finally, we highlighted the limits of current short-read NGS studies in the analysis of genetic diversity of the LTRs in the human genome. In conclusion, our comparative re-sequencing analysis revealed that ectopic gene conversion is a common event in the evolution of LTR elements, suggesting complex genetic links among LTRs from different chromosomes. PMID:27346230

  2. Mouse endogenous retroviral long terminal repeat (LTR) elements and environmental carcinogenesis

    Energy Technology Data Exchange (ETDEWEB)

    Yang, W.K.; Ch' ang, L-Y; Myer, F.E.; Yang, M.D.; Koh, C.K.

    1988-01-01

    For the past several years, the working hypothesis of this laboratory has been that chromosomal retrovirus-related gene elements play important roles in gene-rearrangement and gene-activation events of carcinogenesis and mutagenesis induced by environmental agents. This working hypothesis is based on the concept of transposable genes as well as the recent understanding of retroviruses (RNA tumor viruses) in relation to the carcinogenesis problem. Activation of transposable gene elements has been discussed from the viewpoint of unprogrammed genomic changes in response to unanticipated genomic shocks. This view was used in considering the possibility of transposable gene elements involved in genetic changes of cancer formation in the animal. In this regard, this concept is similar to the perspectives of RNA tumor viruses, the oncogene-virogene hypothesis, and the provirus hypothesis because retroviruses replicate through DNA forms that carry long terminal repeat (LTR) sequences resembling the insertion sequences (or the IS elements) of prokaryotic transposons. The finding of oncogene myc activation in avian leukosis virus-induced leukemogenesis and proviral insertion in the mouse dilute locus mutation have also pointed to the functional similarity between retroviruses and transposable genes.

  3. A yeast model for target-primed (non-LTR retrotransposition

    Directory of Open Access Journals (Sweden)

    Busby Jason N

    2007-08-01

    Full Text Available Abstract Background Target-primed (non-LTR retrotransposons, such as the human L1 element, are mobile genetic elements found in many eukaryotic genomes. They are often present in large numbers and their retrotransposition can cause mutations and genomic rearrangements. Despite their importance, many aspects of their replication are not well understood. Results We have developed a yeast model system for studying target-primed retrotransposons. This system uses the Zorro3 element from Candida albicans. A cloned copy of Zorro3, tagged with a retrotransposition indicator gene, retrotransposes at a high frequency when introduced into an appropriate C. albicans host strain. Retrotransposed copies of the tagged element exhibit similar features to the native copies, indicating that the natural retrotransposition pathway is being used. Retrotransposition is dependent on the products of the tagged element's own genes and is highly temperature-regulated. The new assay permits the analysis of the effects of specific mutations introduced into the cloned element. Conclusion This Zorro3 retrotransposition assay system complements previously available target-primed retrotransposition assays. Due to the relative simplicity of the growth, manipulation and analysis of yeast cells, the system should advance our understanding of target-primed retrotransposition.

  4. An abundant and heavily truncated non-LTR retrotransposon (LINE) family in Beta vulgaris.

    Science.gov (United States)

    Wenke, Torsten; Holtgräwe, Daniela; Horn, Axel V; Weisshaar, Bernd; Schmidt, Thomas

    2009-12-01

    We describe a non-LTR retrotransposon family,BvL, of the long interspersed nuclear elements L1 clade isolated from sugar beet (Beta vulgaris). Characteristic molecular domains of three full-length BvL elements were determined in detail, showing that coding sequences are interrupted and most likely non-functionally. In addition,eight highly conserved endonuclease regions were defined by comparison with other plant LINEs. The abundant BvL family is widespread within the genus Beta, however, the vast majority of BvL copies are extremely 50 truncated indicating an error-prone reverse transcriptase activity. The dispersed distribution of BvL copies on all sugar beet chromosomes with exclusion of most heterochromatic regions was shown by fluorescent in situ hybridization. The analysis of BvL 30 end sequences and corresponding flanking regions, respectively, revealed the preferred integration of BvL into A/T-rich regions of the sugar beet genome, but no specific target sequences.

  5. “Ay, But Droma Pkhirdyom”: The Gypsy and the Road (Self-Identity in Soviet and Post-Soviet Gypsy Literature in the Russian Cultural and Political Context

    Directory of Open Access Journals (Sweden)

    Maria Valentinovna Kuglerova

    2014-12-01

    Full Text Available “Ay, But Droma Pkhirdyom”: The Gypsy and the Road (Self-Identity in Soviet and Post-Soviet Gypsy Literature in the Russian Cultural and Political Context The Gypsies have always been a peculiar minority in Russia. On one hand, the Russians admired Gypsies’ vagrancy and desire for freedom. The Gypsies were a kind of an alter-ego of the Russians’ – as they wished to be, but dared not. On the other hand, the Gypsies even in relatively liberal czarist times were treated as the second-rate people, not mentioning the soviet deportations. The Gypsy wandering was especially irritating, so the authorities always tried to settle them down. From the Gypsies’ side the attitude (the strict opposition Gadjo/Roma and at the same time the phenomenon of the “choral” settled Gypsies who connected Russian and Gypsy cultures was ambiguous, too. It shows the main feature of Gypsy identity – the desire for wandering, the dependence – but only on the road, and the dual attitude to this feature from the side of the Russian majority. This feature and the ambiguous attitude towards it one can define as the crucial feature of the Soviet and Post-Soviet Gypsy literature. By 1938 (before the supporting of the national minorities stopped in Soviet Gypsy literature existed two main directions in the narration: the narration about the evil capitalistic past (the exploitation of the “choral” Gypsies, who were devoid of the road by Russians – M.Iljinsko’s stories and the depicting of the brave Soviet reality – when the Gypsies are happy to work and to be settled in the kolkhozes (M.Bezludzko’s poems. This image of the new Soviet Gypsy is rooted in the image of the vagrancy (through its’ denial for Soviet epoch and its’ glorification for czarist times, as the detailed analysis of the texts shows.   „Ay, But Droma Pkhirdyom”: Cygan i droga  (Tożsamość własna w radzieckiej i postradzieckiej literaturze cygańskiej w rosyjskim kontek

  6. Approaches to Working with Children, Young People and Families for Traveller, Irish Traveller, Gypsy, Roma and Show People Communities. Annotated Bibliography for the Children's Workforce Development Council

    Science.gov (United States)

    Robinson, Mark; Martin, Kerry; Wilkin, Carol

    2008-01-01

    This annoted bibliography relays a range of issues and approaches to working with Travellers, Irish Travellers, Gypsies, Roma and Show People. This is an accompanying document to the literature review report, ED501860.

  7. Regulation of FeLV-945 by c-Myb binding and CBP recruitment to the LTR

    Directory of Open Access Journals (Sweden)

    Finstad Samantha L

    2004-09-01

    Full Text Available Abstract Background Feline leukemia virus (FeLV induces degenerative, proliferative and malignant hematologic disorders in its natural host, the domestic cat. FeLV-945 is a viral variant identified as predominant in a cohort of naturally infected animals. FeLV-945 contains a unique sequence motif in the long terminal repeat (LTR comprised of a single copy of transcriptional enhancer followed by a 21-bp sequence triplicated in tandem. The LTR is precisely conserved among independent cases of multicentric lymphoma, myeloproliferative disease and anemia in animals from the cohort. The 21-bp triplication was previously shown to act as a transcriptional enhancer preferentially in hematopoietic cells and to confer a replicative advantage. The objective of the present study was to examine the molecular mechanism by which the 21-bp triplication exerts its influence and the selective advantage responsible for its precise conservation. Results Potential binding sites for the transcription factor, c-Myb, were identified across the repeat junctions of the 21-bp triplication. Such sites would not occur in the absence of the repeat; thus, a requirement for c-Myb binding to the repeat junctions of the triplication would exert a selective pressure to conserve its sequence precisely. Electrophoretic mobility shift assays demonstrated specific binding of c-Myb to the 21-bp triplication. Reporter gene assays showed that the triplication-containing LTR is responsive to c-Myb, and that responsiveness requires the presence of both c-Myb binding sites. Results further indicated that c-Myb in complex with the 21-bp triplication recruits the transcriptional co-activator, CBP, a regulator of normal hematopoiesis. FeLV-945 replication was shown to be positively regulated by CBP in a manner dependent on the presence of the 21-bp triplication. Conclusion Binding sites for c-Myb across the repeat junctions of the 21-bp triplication may account for its precise conservation in

  8. Molecular evolution of magellan, a maize Ty3/gypsy-like retrotransposon.

    Science.gov (United States)

    Purugganan, M D; Wessler, S R

    1994-11-22

    The magellan transposable element is responsible for a spontaneous 5.7-kb insertion in the maize wx-M allele. This element has the sequence and structural characteristics of a Ty3/gypsy-like retrotransposon. The magellan element is present in all Zea species and Tripsacum andersonii; it is absent, however, in the genomes of all other Tripsacum species analyzed. The genetic distances between magellan elements suggest that this retrotransposon is evolving faster than other Zea nuclear loci. The phylogeny of magellan within Zea and T. andersonii also reveals a pattern of interspecies transfers, resulting in the movement of magellan subfamilies between different species genomes. Interspecific hybridization may be a major mechanism by which this retrotransposon invades and establishes itself in new taxa.

  9. Genetic Innovation in Vertebrates: Gypsy Integrase Genes and Other Genes Derived from Transposable Elements

    Directory of Open Access Journals (Sweden)

    Domitille Chalopin

    2012-01-01

    Full Text Available Due to their ability to drive DNA rearrangements and to serve as a source of new coding and regulatory sequences, transposable elements (TEs are considered as powerful evolutionary agents within genomes. In this paper, we review the mechanism of molecular domestication, which corresponds to the formation of new genes derived from TE sequences. Many genes derived from retroelements and DNA transposons have been identified in mammals and other vertebrates, some of them fulfilling essential functions for the development and survival of their host organisms. We will particularly focus on the evolution and expression of Gypsy integrase (GIN genes, which have been formed from ancient event(s of molecular domestication and have evolved differentially in some vertebrate sublineages. What we describe here is probably only the tip of the evolutionary iceberg, and future genome analyses will certainly uncover new TE-derived genes and biological functions driving genetic innovation in vertebrates and other organisms.

  10. Neurophysiological and behavioral responses of gypsy moth larvae to insect repellents: DEET, IR3535, and picaridin.

    Directory of Open Access Journals (Sweden)

    Jillian L Sanford

    Full Text Available The interactions between insect repellents and the olfactory system have been widely studied, however relatively little is known about the effects of repellents on the gustatory system of insects. In this study, we show that the gustatory receptor neuron (GRN located in the medial styloconic sensilla on the maxillary palps of gypsy moth larvae, and known to be sensitive to feeding deterrents, also responds to the insect repellents DEET, IR3535, and picaridin. These repellents did not elicit responses in the lateral styloconic sensilla. Moreover, behavioral studies demonstrated that each repellent deterred feeding. This is the first study to show perception of insect repellents by the gustatory system of a lepidopteran larva and suggests that detection of a range of bitter or aversive compounds may be a broadly conserved feature among insects.

  11. Stepwise evolution of two giant composite LTR-retrotransposon-like elements DA and Xiao

    Directory of Open Access Journals (Sweden)

    Li Xuanyang

    2009-06-01

    Full Text Available Abstract Background We recently discovered two composite long terminal repeat (LTR-retrotransposon-like elements which we named DA (~300 kb and Xiao (~30 kb, meaning big and small in Chinese respectively. Xiao and DA (three types of DA identified were found to have been derived from several donor sites and have spread to 30 loci in the human genome, totaling to 5 Mb. Our bioinformatics analyses with the released human, chimp, rhesus macaque, orangutan, and marmoset genomic sequences indicate that DA and Xiao emerged ~25 million years (Myr ago. Results To better understand the evolution of these two complex elements, we investigated various internal junctions of DA and Xiao as well as orthologous genomic sites of the 30 DA/Xiao loci in non-human primates including great apes, lesser apes, Old World monkeys, New World monkeys, and a prosimian. We found that Xiao and type I DA first emerged in the genome between 25 and 18 Myr ago, whereas type II and Type III DAs emerged between 14 and 7 Myr ago. Xiao and DA were most active in great apes, with their amplification peaking during 25-14 and 14-7 Myr ago, respectively. Neither DA nor Xiao seem to have been active in the human and chimp genomes during last 6 Myr. Conclusion The study has led to a more accurate age determination of the DA and Xiao elements than our previous bioinformatics analyses, and indicates that the amplification activity of the elements coincided with that of group I HERV-Es during evolution. It has also illustrated an evolutionary path with stepwise structural changes for the elements during past 25 Myr, and in doing so has shed more light on these two intriguing and complex elements that have reshaped our genome.

  12. Expression of the Idefix retrotransposon in early follicle cells in the germarium of Drosophila melanogaster is determined by its LTR sequences and a specific genomic context.

    Science.gov (United States)

    Tcheressiz, S; Calco, V; Arnaud, F; Arthaud, L; Dastugue, B; Vaury, C

    2002-04-01

    Retrotransposons are transcriptionally activated in different tissues and cell types by a variety of genomic and environmental factors. Transcription of LTR retrotransposons is controlled by cis-acting regulatory sequences in the 5' LTR. Mobilization of two LTR retroelements, Idefix and ZAM, occurs in the unstable RevI line of Drosophila melanogaster, in which their copy numbers are high, while they are low in all other stocks tested. Here we show that both a full-length and a subgenomic Idefix transcript that are necessary for its mobilization are present in the Rev1 line, but not in the other lines. Studies on transgenic strains demonstrate that the 5' LTR of Idefix contains sequences that direct the tissue-specific expression of the retroelement in testes and ovaries of adult flies. In ovaries, expression occurs in the early follicle and in other somatic cells of the germarium, and is strictly associated with the unstable genetic context conferred by the RevI line. Control of tissue-specific Idefix expression by interactions between cis-acting sequences of its LTR and trans-acting genomic factors provides an opportunity to use this retroelement as a tool for the study of the early follicle cell lineage in the germarium.

  13. Genetic variation and correlations of life-history traits in gypsy moths (Lymantria dispar L. from two populations in Serbia

    Directory of Open Access Journals (Sweden)

    Lazarević Jelica

    2008-01-01

    Full Text Available Periodic fluctuations in density impose different selection pressures on populations of outbreaking Lepidoptera due to changes in their nutritional environment. The maternal effects hypothesis of insect outbreak predicts the transmission of this nutritional "information" to subsequent generations and alterations in offspring life-history traits. To test for these time-delayed effects of the parental generation, we compared life-history traits and their variation and covariation among laboratory-reared gypsy moths hatched from egg masses collected from low- and medium-density populations. Decreased individual performance was recorded in offspring from the medium-density population, indicating reduced egg provisioning under crowding conditions. Genetic variance and covariance were also shown to be sensitive to density of the parental generation. In gypsy moths from the medium-density population, quantitative genetic analysis revealed significantly higher broad-sense heritabilities for development duration traits and demonstrated a trade-off between development duration and body size.

  14. A specific insertion of a solo-LTR characterizes the Y-chromosome of Bryonia dioica (Cucurbitaceae

    Directory of Open Access Journals (Sweden)

    Renner Susanne S

    2010-06-01

    Full Text Available Abstract Background Relatively few species of flowering plants are dioecious and even fewer are known to have sex chromosomes. Current theory posits that homomorphic sex chromosomes, such as found in Bryonia dioica (Cucurbitaceae, offer insight into the early stages in the evolution of sex chromosomes from autosomes. Little is known about these early steps, but an accumulation of transposable element sequences has been observed on the Y-chromosomes of some species with heteromorphic sex chromosomes. Recombination, by which transposable elements are removed, is suppressed on at least part of the emerging Y-chromosome, and this may explain the correlation between the emergence of sex chromosomes and transposable element enrichment. Findings We sequenced 2321 bp of the Y-chromosome in Bryonia dioica that flank a male-linked marker, BdY1, reported previously. Within this region, which should be suppressed for recombination, we observed a solo-LTR nested in a Copia-like transposable element. We also found other, presumably paralogous, solo-LTRs in a consensus sequence of the underlying Copia-like transposable element. Conclusions Given that solo-LTRs arise via recombination events, it is noteworthy that we find one in a genomic region where recombination should be suppressed. Although the solo-LTR could have arisen before recombination was suppressed, creating the male-linked marker BdY1, our previous study on B. dioica suggested that BdY1 may not lie in the recombination-suppressed region of the Y-chromosome in all populations. Presence of a solo-LTR near BdY1 therefore fits with the observed correlation between retrotransposon accumulation and the suppression of recombination early in the evolution of sex chromosomes. These findings further suggest that the homomorphic sex chromosomes of B. dioica, the first organism for which genetic XY sex-determination was inferred, are evolutionarily young and offer reference information for comparative studies

  15. Human Immunodeficiency Virus-Type 1 LTR DNA contains an intrinsic gene producing antisense RNA and protein products

    Directory of Open Access Journals (Sweden)

    Hsiao Chiu-Bin

    2006-11-01

    Full Text Available Abstract Background While viruses have long been shown to capitalize on their limited genomic size by utilizing both strands of DNA or complementary DNA/RNA intermediates to code for viral proteins, it has been assumed that human retroviruses have all their major proteins translated only from the plus or sense strand of RNA, despite their requirement for a dsDNA proviral intermediate. Several studies, however, have suggested the presence of antisense transcription for both HIV-1 and HTLV-1. More recently an antisense transcript responsible for the HTLV-1 bZIP factor (HBZ protein has been described. In this study we investigated the possibility of an antisense gene contained within the human immunodeficiency virus type 1 (HIV-1 long terminal repeat (LTR. Results Inspection of published sequences revealed a potential transcription initiator element (INR situated downstream of, and in reverse orientation to, the usual HIV-1 promoter and transcription start site. This antisense initiator (HIVaINR suggested the possibility of an antisense gene responsible for RNA and protein production. We show that antisense transcripts are generated, in vitro and in vivo, originating from the TAR DNA of the HIV-1 LTR. To test the possibility that protein(s could be translated from this novel HIV-1 antisense RNA, recombinant HIV antisense gene-FLAG vectors were designed. Recombinant protein(s were produced and isolated utilizing carboxy-terminal FLAG epitope (DYKDDDDK sequences. In addition, affinity-purified antisera to an internal peptide derived from the HIV antisense protein (HAP sequences identified HAPs from HIV+ human peripheral blood lymphocytes. Conclusion HIV-1 contains an antisense gene in the U3-R regions of the LTR responsible for both an antisense RNA transcript and proteins. This antisense transcript has tremendous potential for intrinsic RNA regulation because of its overlap with the beginning of all HIV-1 sense RNA transcripts by 25 nucleotides. The

  16. Context variations and pluri-methodological issues concerning the expression of a social representation: the example of the Gypsy community.

    Science.gov (United States)

    Piermattéo, Anthony; Lo Monaco, Grégory; Moreau, Laure; Girandola, Fabien; Tavani, Jean-Louis

    2014-11-20

    Within the social representations' field of research, the "mute zone" hypothesis considers that some objects are characterized by counternormative content that people usually do not express in standard conditions of production. Within the framework of this approach, this study aims to explore the variations in the expression about the Gypsy community following the manipulation of different contexts and the issues associated with a pluri-methodological approach of data analysis. Indeed, two methodologies have been combined. The participants were asked to express themselves in public or in private. In addition, the identity of the experimenter was also manipulated as she presented herself as a Gypsy or not. Then, through a set of analyses based on a methodological triangulation approach, we were able to observe a recurrent modulation of the participants' answers. These analyses highlighted a greater incidence of the expression of counternormative elements when the context of expression was private and especially when the experimenter did not present herself as a Gypsy (p < .01, η p ² = .06). These results will be discussed in terms of the contribution of the methodologies employed and their comparison within the framework of the study of counternormative content.

  17. A piece of the mosaic: Gypsies in the building of an intercultural Europe

    Directory of Open Access Journals (Sweden)

    Simona Sidoti

    2011-01-01

    Full Text Available The article proposes a critical approach to the notion of interculturality in the context of the geopolitical and social transformations that marked the transition from the nation-state system to the birth of a common European identity.In the European society the demarginalisation of  territorial and identification borders raises the question of cultural differences and the need to redefine the new criteria for social inclusion. In this perspective, the process of European integration finds its own testing ground in social policies designed to cultural minority. The article focuses precisely on the case of Gypsy communities, exploring the symbolic and political mechanisms that have historically compromised public image of Gypsies through the ‘nomad theory’ by considering nomadism as part of an inherent identity. The reproduction of this stereotype is at the basis of a social stigma of Gypsy groups, perceived as a public order problem that is reflected in national and supranational politics according to the tendency to consider Gypsies as incapable of decision making and not interlocutors on issues such as health, education and housing. In this text, the author aims to examine these aspects of social exclusion of Gypsy communities and the fault lines of their Europeanisation process, emphasizing their deep roots in the historical and social structure of Europe and their political migration as a creative adaptation strategy to the historical-economic conjunctures. In this framework of reference, interculturality becomes an analytical and political tool that is capable of overcoming the conflicts between the majority society and minorities and a project able to oppose to the ideologies of difference that transform the cultures into abstract and incommunicable entities.El artículo propone un acercamiento crítico a la noción de interculturalidad en el cuadro de las transformaciones sociales y geopolíticas que han

  18. Attitude control system synthesis for the Hoop/Column antenna using the LQG/LTR method. [loop transfer recovery

    Science.gov (United States)

    Sundararajan, N.; Joshi, S. M.; Armstrong, E. S.

    1986-01-01

    This paper investigates the application of the linear-quadratic-Gaussian (LQG)/loop transfer recovery (LTR) method to the problem of synthesizing a fine-pointing control system for a large flexible space anenna. The study is based on an antenna, which consists of three rigid-body rotational modes and the first ten elastic modes. A robust compensator design for achieving the required pointing performance in the presence of modeling uncertainties is obtained using the LQG/LTR method. For the Hoop/Column antenna, a satisfactory controller design meeting a desired bandwidth of .1 rad/sec and ensuring stability with unmodelled high frequency modes is obtained using only a collocated pair of 3-axis attitude sensors and torque actuators. This study also indicates that to achieve the desired performance bandwidth of 0.1 rad/sec. and to ensure stability in the presence of higher frequency elastic modes, the design model should include at least the first three flexible modes together with the rigid body modes.

  19. Unexpected Modulation of Recall B and T Cell Responses after Immunization with Rotavirus-like Particles in the Presence of LT-R192G

    Directory of Open Access Journals (Sweden)

    Christelle Basset

    2010-08-01

    Full Text Available LT-R192G, a mutant of the thermolabile enterotoxin of E. coli, is a potent adjuvant of immunization. Immune responses are generally analyzed at the end of protocols including at least 2 administrations, but rarely after a prime. To investigate this point, we compared B and T cell responses in mice after one and two intrarectal immunizations with 2/6 rotavirus-like particles (2/6-VLP and LT-R192G. After a boost, we found, an unexpected lower B cell expansion measured by flow cytometry, despite a secondary antibody response. We then analyzed CD4+CD25+Foxp3+ regulatory T cells (Tregs and CD4+CD25+Foxp3− helper T cells after in vitro (restimulation of mesenteric lymph node cells with the antigen (2/6-VLP, the adjuvant (LT-R192G or both. 2/6-VLP did not activate CD4+CD25+Foxp3− nor Foxp3+ T cells from non-immunized and 2/6-VLP immunized mice, whereas they did activate both subsets from mice immunized with 2/6-VLP in the presence of adjuvant. LT-R192G dramatically decreased CD4+CD25+Foxp3+ T cells from non-immunized and 2/6-VLP immunized mice but not from mice immunized with 2/6-VLP and adjuvant. Moreover, in this case, LT-R192G increased Foxp3 expression on CD4+CD25+Foxp3+ cells, suggesting specific Treg activation during the recall. Finally, when both 2/6-VLP and LT-R192G were used for restimulation, LT-R192G clearly suppressed both 2/6-VLP-specific CD4+CD25+Foxp3− and Foxp3+ T cells. All together, these results suggest that LT-R192G exerts different effects on CD4+CD25+Foxp3+ T cells, depending on a first or a second contact. The unexpected immunomodulation observed during the recall should be considered in designing vaccination protocols.

  20. Development of gypsy moth (Lymantria dispar L on the foliage of Quercus cerris L., Q. Petraea (matt Liebl. and Q. Robur L. in the controlled conditions

    Directory of Open Access Journals (Sweden)

    Milanović Slobodan

    2007-01-01

    Full Text Available The development of Gypsy moth (Lymantria dispar L was monitored in laboratory conditions, on the foliage of the species Quercus cerris L. Quercus petraea (Matt Liebl. and Quercus robur L. The experiment was established in the controlled environmental conditions, at the temperature of 25°C, photoperiod 14:10 (day: night and relative humidity 70%. The objective of the research was to determine the suitability of the study host plant species for gypsy moth development. The study results show that Gypsy moth caterpillars cultivated on Q. petraea foliage had a lower survival, higher number of moultings, longer preadult development and lower fecundity, which makes this species less suitable compared to the other two. Gypsy moth caterpillars cultivated on Q. cerris foliage had the highest survival degree the lowest number of moultings, the shortest preadult development and the highest fecundity, which makes this species the most favourable for gypsy moth development. Q. robur was between the former two species in this respect.

  1. Early predictors of reading in three groups of native Spanish speakers: Spaniards, Gypsies, and Latin Americans.

    Science.gov (United States)

    López-Escribano, Carmen; Beltrán, Jesús A

    2009-05-01

    The main purpose of the study reported here was to examine the early linguistic predictors of reading (e.g., Knowledge About Print, Listening Comprehension, Receptive Vocabulary, Rapid Naming of Objects and Letters, and Phonological Awareness), for a sample of 77 Spaniards, 48 Latinos, and 30 Gypsies kindergartens (mean age = 5 years 9 months) living in Spain. The relative contribution of ethnic background, neighbourhood socioeconomic status (SES), age, and gender was assessed. Findings revealed that ethnic background, neighborhood SES, and age differentially predicted children's pre-literacy skills. The implications of these results for understanding the role played by these demographic and socio-cultural variables in alphabetic literacy acquisition are discussed. The second purpose of this study was to add to the growing literature on the nature of reading challenges in children who are learning to read a transparent orthography-Spanish. Cross-linguistic research between different subtypes of readers will add to understand the impact of language characteristics in reading acquisition. Finally, the present study suggested that early assessment of pre-literacy skills can be a highly effective way to determine the instructional needs of students who are at risk for reading failure before formal reading instruction begins.

  2. Activity of gypsy moth dorsolateral neurosecretory neurons under increased rearing density

    Directory of Open Access Journals (Sweden)

    Mrdaković Marija

    2012-01-01

    Full Text Available Lymantria dispar caterpillars were reared under two different rearing densities for the first three days of the 4th larval instar: 5 larvae that were kept in a Petri dish (V = 80 ml belonged to the intense stress (D1 group; 5 larvae that were kept in a plastic cup (V = 300ml belonged to the group exposed to less intense stress (D2 group. In the control group, single larvae were reared in a Petri dish. Morphometric changes in L1, L2 and L2’ dorsolateral neurosecretory neurons (nsn were analyzed. After keeping 5 larvae in a Petri dish, the size of L2 neurosecretory neurons (nsn significantly increased. Rearing 5 larvae in a plastic cup significantly increased the size of L1 nsn nuclei and the number of L2’nsn. A decrease in relative band densities in the region of molecular masses (11-15 kD that correspond to prothoracicotropic hormones in the gypsy moth was observed in the electrophoretic profiles that were obtained after both treatments in comparison to the control group. [Acknowledgments. This study was supported by the Serbian Ministry of Education and Science (Grant No. 173027.

  3. Tolerance or Assimilation: The Legends of the Chinese Restaurant and "The Gypsy's Tavern"

    Directory of Open Access Journals (Sweden)

    Ivan Kovačević

    2016-02-01

    Full Text Available Studying urban legends, the French folklorist Véronique Campion-Vincent posed the question of whether some of the more recent legends preach tolerance. The "elevator incident" or "swallowed ticket" legends display a different attitude to Others from that found in classic xenophobic urban legends. This different attitude is also to be found in two legends recorded in Serbia, namely, the legend of the Chinese restaurant and the legend of "The Gypsy's Tavern". An analysis of the two legends shows that the ambiguity of "tolerance legends" does not arise from the fact that they speak about a xenophobic environment while at the same time having a denouement that "preaches" tolerance, but rather from the fact that the "preaching" relates to those Others who have gone through a process of acculturation, who have been assimilated and who have accepted the rules of "our" culture. These legends do not preach tolerance towards the Otherness of Others but towards Others who are striving to become or have managed to become "Us".

  4. Corky, a gypsy-like retrotransposon is differentially transcribed in Quercus suber tissues

    Directory of Open Access Journals (Sweden)

    Rocheta Margarida

    2012-08-01

    Full Text Available Abstract Background Transposable elements (TEs make up a large part of eukaryotic genomes. Due to their repetitive nature and to the fact that they harbour regulatory signals, TEs can be responsible for chromosomal rearrangements, movement of gene sequences and evolution of gene regulation and function. Retrotransposon ubiquity raises the question about their function in genomes and most are transcriptionally inactive due to rearrangements that compromise their activity. However, the activity of TEs is currently considered to have been one of the major processes in genome evolution. Findings We report on the characterization of a transcriptionally active gypsy-like retrotransposon (named Corky from Quercus suber, in a comparative and quantitative study of expression levels in different tissues and distinct developmental stages through RT-qPCR. We observed Corky’s differential transcription levels in all the tissues analysed. Conclusions These results document that Corky’s transcription levels are not constant. Nevertheless, they depend upon the developmental stage, the tissue analysed and the potential occurring events during an individuals’ life span. This modulation brought upon by different developmental and environmental influences suggests an involvement of Corky in stress response and during development.

  5. Exogenous gypsy insulator sequences modulate transgene expression in the malaria vector mosquito, Anopheles stephensi.

    Science.gov (United States)

    Carballar-Lejarazú, Rebeca; Jasinskiene, Nijole; James, Anthony A

    2013-04-30

    Malaria parasites are transmitted to humans by mosquitoes of the genus Anopheles, and these insects are the targets of innovative vector control programs. Proposed approaches include the use of genetic strategies based on transgenic mosquitoes to suppress or modify vector populations. Although substantial advances have been made in engineering resistant mosquito strains, limited efforts have been made in refining mosquito transgene expression, in particular attenuating the effects of insertions sites, which can result in variations in phenotypes and impacts on fitness due to the random integration of transposon constructs. A promising strategy to mitigate position effects is the identification of insulator or boundary DNA elements that could be used to isolate transgenes from the effects of their genomic environment. We applied quantitative approaches that show that exogenous insulator-like DNA derived from the Drosophila melanogaster gypsy retrotransposon can increase and stabilize transgene expression in transposon-mediated random insertions and recombinase-catalyzed, site-specific integrations in the malaria vector mosquito, Anopheles stephensi. These sequences can contribute to precise expression of transgenes in mosquitoes engineered for both basic and applied goals.

  6. Drosophila gypsy insulator and yellow enhancers regulate activity of yellow promoter through the same regulatory element.

    Science.gov (United States)

    Melnikova, Larisa; Kostuchenko, Margarita; Silicheva, Margarita; Georgiev, Pavel

    2008-04-01

    There is ample evidence that the enhancers of a promoterless yellow locus in one homologous chromosome can activate the yellow promoter in the other chromosome where the enhancers are inactive or deleted, which is indicative of a high specificity of the enhancer-promoter interaction in yellow. In this paper, we have found that the yellow sequence from -100 to -69 is essential for stimulation of the heterologous eve (TATA-containing) and white (TATA-less) promoters by the yellow enhancers from a distance. However, the presence of this sequence is not required when the yellow enhancers are directly fused to the heterologous promoters or are activated by the yeast GAL4 activator. Unexpectedly, the same promoter proximal region defines previously described promoter-specific, long-distance repression of the yellow promoter by the gypsy insulator on the mod(mdg4) ( u1 ) background. These finding suggest that proteins bound to the -100 to -69 sequence are essential for communication between the yellow promoter and upstream regulatory elements.

  7. The N-Terminal GYPSY Motif Is Required for Pilin-Specific Sortase SrtC1 Functionality in Lactobacillus rhamnosus Strain GG.

    Science.gov (United States)

    Douillard, François P; Rasinkangas, Pia; Bhattacharjee, Arnab; Palva, Airi; de Vos, Willem M

    2016-01-01

    Predominantly identified in pathogenic Gram-positive bacteria, sortase-dependent pili are also found in commensal species, such as the probiotic-marketed strain Lactobacillus rhamnosus strain GG. Pili are typically associated with host colonization, immune signalling and biofilm formation. Comparative analysis of the N-terminal domains of pilin-specific sortases from various piliated Gram-positive bacteria identified a conserved motif, called GYPSY, within the signal sequence. We investigated the function and role of the GYPSY residues by directed mutagenesis in homologous (rod-shaped) and heterologous (coccoid-shaped) expression systems for pilus formation. Substitutions of some of the GYPSY residues, and more specifically the proline residue, were found to have a direct impact on the degree of piliation of Lb. rhamnosus GG. The present findings uncover a new signalling element involved in the functionality of pilin-specific sortases controlling the pilus biogenesis of Lb. rhamnosus GG and related piliated Gram-positive species.

  8. Suppressor of hairy-wing, modifier of mdg4 and centrosomal protein of 190 gene orthologues of the gypsy insulator complex in the malaria mosquito, Anopheles stephensi.

    Science.gov (United States)

    Carballar-Lejarazú, R; Brennock, P; James, A A

    2016-08-01

    DNA insulators organize independent gene regulatory domains and can regulate interactions amongst promoter and enhancer elements. They have the potential to be important in genome enhancing and editing technologies because they can mitigate chromosomal position effects on transgenes. The orthologous genes of the Anopheles stephensi putative gypsy-like insulator protein complex were identified and expression characteristics studied. These genes encode polypeptides with all the expected protein domains (Cysteine 2 Histidine 2 (C2H2) zinc fingers and/or a bric-a-brac/poxvirus and zinc finger). The mosquito gypsy transcripts are expressed constitutively and are upregulated in ovaries of blood-fed females. We have uncovered significant experimental evidence that the gypsy insulator protein complex is widespread in vector mosquitoes.

  9. 建鲤基因组中一个ty3-gypsy反转录转座子的发现与分析%Isolation and analysis of aty3-gypsy retrotransposon from the genome ofCyprinus carpio var.jian

    Institute of Scientific and Technical Information of China (English)

    丁炜东; 曹丽萍; 曹哲明; 邴旭文

    2016-01-01

    转座子是动植物基因组的重要组成部分,在前期研究中发现建鲤(Cyprinus carpio var.jian)基因组中存在一个ty3-gypsy反转录转座子类型的转座子,并将其命名为JRE转座子(Jian carp Retrotransposon, JRE )。为了研究JRE反转录转座子在建鲤基因组中的功能,采用 PCR 扩增、荧光定量 PCR 和原位杂交等方法对 JRE 转座子的特性进行了研究。JRE反转录转座子全长5126 bp,具有5¢端470 bp和3¢端453 bp长末端重复片段(long terminal repeat end, LTR),中间的开放阅读框(ORF)包括核心蛋白基因(gag)和酶基因区域(pol),其长度为4203 bp。pol基因具有典型的ty3-gypsy 反转录转座子结构,基因顺序为 PR-RT-RH-IN 基因。对 pol 基因的同源分析表明,其与虾夷扇贝(Mizuh-opecten yessoensis)、栉孔扇贝(Azumapecten farreri)、大堡礁海绵(Xiphophorus maculates)和斑剑尾鱼(Xiphophorus maculates)pol基因相似性分别为40.7%、40.0%、32.8%和30.1%,因此JRE可能属于JULE反转录转座子家族。采用实时定量 PCR对 JRE 转座子在建鲤基因组内的拷贝数进行了测定,结果表明其拷贝数为124,同时对不同组织中的mRNA表达量的研究表明, JRE转座子在建鲤肝、肾、血、肌肉、性腺5种组织中均有表达,在肾和肝中表达量略高。染色体原位杂交结果表明, JRE转座子在建鲤的染色体上随机分布,没有明显的规律性。本研究表明, JRE转座子具有典型的反转录转座子结构,属于JULE转座子的分枝,在染色体上的分布不多,其转录活性并不是很高,对我们了解建鲤基因组构成和特点增加了知识储备,同时为利用转座子的活性进行转基因研究提供了一种新的途径和工具。%Transposable elements are major constituents of eukaryote genomes and have a significant effect on genome structure and stability. They also contribute to the genetic diversity and evolution of organisms. Knowledge of their distribution

  10. Characterization of SR3 reveals abundance of non-LTR retrotransposons of the RTE clade in the genome of the human blood fluke, Schistosoma mansoni

    Directory of Open Access Journals (Sweden)

    Brindley Paul J

    2005-11-01

    Full Text Available Abstract Background It is becoming apparent that perhaps as much as half of the genome of the human blood fluke Schistosoma mansoni is constituted of mobile genetic element-related sequences. Non-long terminal repeat (LTR retrotransposons, related to the LINE elements of mammals, comprise much of this repetitive component of the schistosome genome. Of more than 12 recognized clades of non-LTR retrotransposons, only members of the CR1, RTE, and R2 clades have been reported from the schistosome genome. Results Inspection of the nucleotide sequence of bacterial artificial chromosome number 49_J_14 from chromosome 1 of the genome of Schistosoma mansoni (GenBank AC093105 revealed the likely presence of several RTE-like retrotransposons. Among these, a new non-LTR retrotransposon designated SR3 was identified and is characterized here. Analysis of gene structure and phylogenetic analysis of both the reverse transcriptase and endonuclease domains of the mobile element indicated that SR3 represented a new family of RTE-like non-LTR retrotransposons. Remarkably, two full-length copies of SR3-like elements were present in BAC 49-J-14, and one of 3,211 bp in length appeared to be intact, indicating SR3 to be an active non-LTR retrotransposon. Both were flanked by target site duplications of 10–12 bp. Southern hybridization and bioinformatics analyses indicated the presence of numerous copies (probably >1,000 of SR3 interspersed throughout the genome of S. mansoni. Bioinformatics analyses also revealed SR3 to be transcribed in both larval and adult developmental stages of S. mansoni and to be also present in the genomes of the other major schistosome parasites of humans, Schistosoma haematobium and S. japonicum. Conclusion Numerous copies of SR3, a novel non-LTR retrotransposon of the RTE clade are present in the genome of S. mansoni. Non-LTR retrotransposons of the RTE clade including SR3 appear to have been remarkably successful in colonizing, and

  11. GABBR1 has a HERV-W LTR in its regulatory region – a possible implication for schizophrenia

    Directory of Open Access Journals (Sweden)

    Hegyi Hedi

    2013-02-01

    Full Text Available Abstract Schizophrenia is a complex disease with uncertain aetiology. We suggest GABBR1, GABA receptor B1 implicated in schizophrenia based on a HERV-W LTR in the regulatory region of GABBR1. Our hypothesis is supported by: (i GABBR1 is in the 6p22 genomic region most often implicated in schizophrenia; (ii microarray studies found that only presynaptic pathway-related genes, including GABA receptors, have altered expression in schizophrenic patients and (iii it explains how HERV-W elements, expressed in schizophrenia, play a role in the disease: by altering the expression of GABBR1 via a long terminal repeat that is also a regulatory element to GABBR1. Reviewers This paper was reviewed by Sandor Pongor and Martijn Huynen.

  12. An avian leukosis virus subgroup J isolate with a Rous sarcoma virus-like 5'-LTR shows enhanced replication capability.

    Science.gov (United States)

    Gao, Yanni; Guan, Xiaolu; Liu, Yongzhen; Li, Xiaofei; Yun, Bingling; Qi, Xiaole; Wang, Yongqiang; Gao, Honglei; Cui, Hongyu; Liu, Changjun; Zhang, Yanping; Wang, Xiaomei; Gao, Yulong

    2015-01-01

    Avian leukosis virus subgroup J (ALV-J) was first isolated from meat-producing chickens that had developed myeloid leukosis. However, ALV-J infections associated with hemangiomas have occurred in egg-producing (layer) flocks in China. In this study, we identified an ALV-J layer isolate (HLJ13SH01) as a recombinant of ALV-J and a Rous sarcoma virus Schmidt-Ruppin B strain (RSV-SRB), which contained the RSV-SRB 5'-LTR and the other genes of ALV-J. Replication kinetic testing indicated that the HLJ13SH01 strain replicated faster than other ALV-J layer isolates in vitro. Sequence analysis indicated that the main difference between the two isolates was the 5'-LTR sequences, particularly the U3 sequences. A 19 nt insertion was uniquely found in the U3 region of the HLJ13SH01 strain. The results of a Dual-Glo luciferase assay revealed that the 19 nt insertion in the HLJ13SH01 strain increased the enhancer activity of the U3 region. Moreover, an additional CCAAT/enhancer element was found in the 19 nt insertion and the luciferase assay indicated that this element played a key role in increasing the enhancer activity of the 5'-U3 region. To confirm the potentiation effect of the 19 nt insertion and the CCAAT/enhancer element on virus replication, three infectious clones with 5'-U3 region variations were constructed and rescued. Replication kinetic testing of the rescued viruses demonstrated that the CCAAT/enhancer element in the 19 nt insertion enhanced the replication capacity of the ALV-J recombinant in vitro.

  13. Mutations in the Lactococcus lactis Ll.LtrB group II intron that retain mobility in vivo

    Directory of Open Access Journals (Sweden)

    D'Souza Lisa M

    2002-12-01

    Full Text Available Abstract Background Group II introns are mobile genetic elements that form conserved secondary and tertiary structures. In order to determine which of the conserved structural elements are required for mobility, a series of domain and sub-domain deletions were made in the Lactococcus lactis group II intron (Ll.LtrB and tested for mobility in a genetic assay. Point mutations in domains V and VI were also tested. Results The largest deletion that could be made without severely compromising mobility was 158 nucleotides in DIVb(1–2. This mutant had a mobility frequency comparable to the wild-type Ll.LtrB intron (ΔORF construct. Hence, all subsequent mutations were done in this mutant background. Deletion of DIIb reduced mobility to approximately 18% of wild-type, while another deletion in domain II (nts 404–459 was mobile to a minor extent. Only two deletions in DI and none in DIII were tolerated. Some mobility was also observed for a DIVa deletion mutant. Of the three point mutants at position G3 in DV, only G3A retained mobility. In DVI, deletion of the branch-point nucleotide abolished mobility, but the presence of any nucleotide at the branch-point position restored mobility to some extent. Conclusions The smallest intron capable of efficient retrohoming was 725 nucleotides, comprising the DIVb(1–2 and DII(iia,b deletions. The tertiary elements found to be nonessential for mobility were alpha, kappa and eta. In DV, only the G3A mutant was mobile. A branch-point residue is required for intron mobility.

  14. Hitchhikers on trade routes: A phenology model estimates the probabilities of gypsy moth introduction and establishment.

    Science.gov (United States)

    Gray, David R

    2010-12-01

    As global trade increases so too does the probability of introduction of alien species to new locations. Estimating the probability of an alien species introduction and establishment following introduction is a necessary step in risk estimation (probability of an event times the consequences, in the currency of choice, of the event should it occur); risk estimation is a valuable tool for reducing the risk of biological invasion with limited resources. The Asian gypsy moth, Lymantria dispar (L.), is a pest species whose consequence of introduction and establishment in North America and New Zealand warrants over US$2 million per year in surveillance expenditure. This work describes the development of a two-dimensional phenology model (GLS-2d) that simulates insect development from source to destination and estimates: (1) the probability of introduction from the proportion of the source population that would achieve the next developmental stage at the destination and (2) the probability of establishment from the proportion of the introduced population that survives until a stable life cycle is reached at the destination. The effect of shipping schedule on the probabilities of introduction and establishment was examined by varying the departure date from 1 January to 25 December by weekly increments. The effect of port efficiency was examined by varying the length of time that invasion vectors (shipping containers and ship) were available for infection. The application of GLS-2d is demonstrated using three common marine trade routes (to Auckland, New Zealand, from Kobe, Japan, and to Vancouver, Canada, from Kobe and from Vladivostok, Russia).

  15. Effects of elevated CO2 leaf diets on gypsy moth (Lepidoptera: Lymantriidae) respiration rates.

    Science.gov (United States)

    Foss, Anita R; Mattson, William J; Trier, Terry M

    2013-06-01

    Elevated levels of CO2 affect plant growth and leaf chemistry, which in turn can alter host plant suitability for insect herbivores. We examined the suitability of foliage from trees grown from seedlings since 1997 at Aspen FACE as diet for the gypsy moth (Lymantria dispar L.) Lepidoptera: Lymantriidae: paper birch (Betula papyrifera Marshall) in 2004-2005, and trembling aspen (Populus tremuloides Michaux) in 2006-2007, and measured consequent effects on larval respiration. Leaves were collected for diet and leaf chemistry (nutritional and secondary compound proxies) from trees grown under ambient (average 380 ppm) and elevated CO2 (average 560 ppm) conditions. Elevated CO2 did not significantly alter birch or aspen leaf chemistry compared with ambient levels with the exception that birch percent carbon in 2004 and aspen moisture content in 2006 were significantly lowered. Respiration rates were significantly higher (15-59%) for larvae reared on birch grown under elevated CO2 compared with ambient conditions, but were not different on two aspen clones, until larvae reached the fifth instar, when those consuming elevated CO2 leaves on clone 271 had lower (26%) respiration rates, and those consuming elevated CO2 leaves on clone 216 had higher (36%) respiration rates. However, elevated CO2 had no apparent effect on the respiration rates of pupae derived from larvae fed either birch or aspen leaves. Higher respiration rates for larvae fed diets grown under ambient or elevated CO2 demonstrates their lower efficiency of converting chemical energy of digested food stuffs extracted from such leaves into their biosynthetic processes.

  16. Are the phytoestrogens genistein and daidzein anti-herbivore defenses? A test using the gypsy moth (Lymantria dispar).

    Science.gov (United States)

    Karowe, David Nathan; Radi, Joshua Karl

    2011-08-01

    Phytoestrogens are compounds that have moderate estrogenic or anti-estrogenic activity toward mammals. Although genistein and daidzein, the main phytoestrogens of soybean, have been the subject of thousands of studies that address their benefit to human health, relatively little is known about their benefits to plants that produce them. It has been suggested that genistein and daidzein protect plants against arthropod herbivores, but direct tests of this hypothesis are rare. In this study, we evaluated the effect of genistein and daidzein on the survivorship, growth, and fecundity of the gypsy moth, a generalist insect herbivore that does not encounter phytoestrogens in its normal diet. We compared survivorship, egg-to-pupa growth rate, and 4th instar performance of gypsy moth caterpillars on artificial diets containing no phytoestrogen, genistein, daidzein, or a combination of genistein and daidzein. Our results indicate that genistein and daidzein do not decrease survivorship, growth, or fecundity of this insect herbivore. Therefore, it seems unlikely that the primary function of these compounds in aboveground plant tissues is anti-herbivore defense.

  17. Leaf surface lipophilic compounds as one of the factors of silver birch chemical defense against larvae of gypsy moth.

    Directory of Open Access Journals (Sweden)

    Vyacheslav V Martemyanov

    Full Text Available Plant chemical defense against herbivores is a complex process which involves a number of secondary compounds. It is known that the concentration of leaf surface lipophilic compounds (SLCs, particularly those of flavonoid aglycones are increased with the defoliation treatment of silver birch Betula pendula. In this study we investigated how the alteration of SLCs concentration in the food affects the fitness and innate immunity of the gypsy moth Lymantria dispar. We found that a low SLCs concentrations in consumed leaves led to a rapid larval development and increased females' pupae weight (= fecundity compared to larvae fed with leaves with high SLCs content. Inversely, increasing the compounds concentration in an artificial diet produced the reverse effects: decreases in both larval weight and larval survival. Low SLCs concentrations in tree leaves differently affected larval innate immunity parameters. For both sexes, total hemocytes count in the hemolymph increased, while the activity of plasma phenoloxidase decreased when larvae consume leaves with reduced content of SLCs. Our results clearly demonstrate that the concentration of SLCs in silver birch leaves affects not only gypsy moth fitness but also their innate immune status which might alter the potential resistance of insects against infections and/or parasitoids.

  18. Linkage of autosomal recessive primary congenital glaucoma to the GLC3A locus in Roms (Gypsies) from Slovakia.

    Science.gov (United States)

    Plásilová, M; Feráková, E; Kádasi, L; Poláková, H; Gerinec, A; Ott, J; Ferák, V

    1998-01-01

    The autosomal recessive form of primary congenital glaucoma (gene symbol GLC3) has been recently mapped to two different loci, GLC3A (at 2p21), and GLC3B (at 1p36), respectively, on families of Turkish and Saudi Arabian provenance. This disorder is known to occur with an extremely high incidence in Roms (Gypsies) in Slovakia. We performed a standard linkage analysis on a sample of 7 Slovak Gypsy families comprising 18 affected members, and found significant linkage with four STR markers from the chromosomal region of 2p21 (D2S1788, D2S1346, D2S2328, and D2S1356), without heterogeneity. This finding demonstrates that in the Rom population of Slovakia, primary congenital glaucoma is due to the locus GLC3A, and consequently, to the mutation(s) in the cytochrome P4501B1 gene, which has been recently identified as the principal cause of the disease. Roms represent the third population, in which the disorder has been mapped to GLC3A.

  19. Variation in Copy Number of Ty3/Gypsy Centromeric Retrotransposons in the Genomes of Thinopyrum intermedium and Its Diploid Progenitors.

    Directory of Open Access Journals (Sweden)

    Mikhail G Divashuk

    Full Text Available Speciation and allopolyploidization in cereals may be accompanied by dramatic changes in abundance of centromeric repeated transposable elements. Here we demonstrate that the reverse transcriptase part of Ty3/gypsy centromeric retrotransposon (RT-CR is highly conservative in the segmental hexaploid Thinopyrum intermedium (JrJvsSt and its possible diploid progenitors Th. bessarabicum (Jb, Pseudoroegneria spicata (St and Dasypyrum villosum (V but the abundance of the repeats varied to a large extent. Fluorescence in situ hybridization (FISH showed hybridization signals in centromeric region of all chromosomes in the studied species, although the intensity of the signals drastically differed. In Th. intermedium, the strongest signal of RT-CR probe was detected on the chromosomes of Jv, intermediate on Jr and faint on Js and St subgenome suggesting different abundance of RT-CR on the individual chromosomes rather than the sequence specificity of RT-CRs of the subgenomes. RT-CR quantification using real-time PCR revealed that its content per genome in Th. bessarabicum is ~ 2 times and P. spicata is ~ 1,5 times higher than in genome of D. villosum. The possible burst of Ty3/gypsy centromeric retrotransposon in Th. intermedium during allopolyploidization and its role in proper mitotic and meiotic chromosome behavior in a nascent allopolyploid is discussed.

  20. Growth responses of gypsy moth larvae to elevated CO2:the influence of methods of insect rearing

    Institute of Scientific and Technical Information of China (English)

    Lan-Zhu Ji; Lin-Li An; Xiao-Wei Wang

    2011-01-01

    The effects of elevated CO2 on foliar chemistry of two tree species (Populus pseudo-simonii Kitag.and Betula platyphylla) and on growth of gypsy moth (Lymantria dispar L.) larvae were examined.Furthermore,we focused on the comparison of results on the growth responses of larvae obtained from two methods of insect rearing,the nochoice feeding trial performed in the laboratory or in situ in open-top chambers.On the whole,both primary and secondary metabolites in the leaves of the two tree species were significantly affected by main effects of time (sampling date),CO2 and species.Elevated CO2 significantly increased the C:N ratio and concentrations of the soluble sugar,starch,total nonstructural carbohydrates,total phenolics and condensed tannins,but significantly decreased the concentration of nitrogen.Higher contents of total phenolics and condensed tannins were detected in the frass of larvae reared in elevated CO2 treatments.Overall,the growth of gypsy moth larvae were significantly inhibited by elevated CO2 and CO2induced changes in leaf quality.Our study did not indicate the two methods of insect rearing could influence the direction of effects of elevated CO2 on the growth of individual insects; however,the magnitude of negative effects of elevated CO2 on larval growth did differ between the two insect rearing methods,and it seems that the response magnitude was also mediated by larval age and host plant species.

  1. I Met Lucky People: The Story of the Romani Gypsies. By Yaron Matras. London: Allen Lane, Penguin Books, 2014, 276 pp.; ISBN 978-1-846-14481-3.

    Directory of Open Access Journals (Sweden)

    Victor A Friedman

    2015-09-01

    Full Text Available This is a book review of I met lucky people: The story of the Romani Gypsies, by Yaron Matras. The work is oriented for a general reading public, but it can be highly recommended for academics and policy makers as well.

  2. Supporting the Learning of Nomadic Communities across Transnational Contexts: Exploring Parallels in the Education of UK Roma Gypsies and Indigenous Australians

    Science.gov (United States)

    Levinson, Martin; Hooley, Neil

    2014-01-01

    Deriving from the authors' respective ethnographic fieldwork (around two decades in each context), this position paper considers experiences of education across two communities: Gypsy/Roma in the UK and Indigenous in Australia. The article brings together understandings across these traditionally nomadic communities, with no shared history or…

  3. Single-stranded DNA fragments of insect-specific nuclear polyhedrosis virus act as selective DNA insecticides for gypsy moth control.

    Science.gov (United States)

    Oberemok, Volodymyr V; Skorokhod, Oleksii A

    2014-07-01

    This paper focuses on the DNA insecticides as a novel preparation against gypsy moth (Lymantria dispar) based on DNA fragments of the anti-apoptotic gene of its nuclear polyhedrosis virus. It was found that the external application of a solution with two single-stranded DNA fragments from BIR and RING domains of LdMNPV (L.dispar multicapsid nuclear polyhedrosis virus) IAP-3 (inhibitor of apoptosis) gene induces a significantly higher mortality of gypsy moth caterpillars in comparison with the application of the control solutions. This effect does not depend on the infection of caterpillars with LdMNPV. The results also show that DNA insecticides based on LdMNPV IAP-3 gene fragments can be selective in action, and at least are not harmful to tobacco hornworm (Manduca sexta) and black cutworm (Agrotis ipsilon). Part of the gypsy moth genome cloned with the fragments of BIR and RING domains of LdMNPV IAP-3 gene as primers, has an overlap with the corresponding part of the LdMNPV IAP-3 gene and L.dispar IAP-1 mRNA for an inhibitor of apoptosis protein with the high cover by query, allows assuming that we cloned a part of gypsy moth anti-apoptosis gene. This finding gives the grounding that proposed here DNA insecticides might act through the blocking of the mechanisms involved in post transcriptional expression of insect anti-apoptosis genes. The results show the insecticidal potential of the viral genome fragments that can be used to create safe and relatively fast-acting DNA insecticides to control the quantity of gypsy moth populations, important task for forestry and agriculture.

  4. Multi-variable control of the GE T700 engine using the LQG/LTR design methodology. [Linear Quadratic Gaussian/Loop Transfer Recovery method

    Science.gov (United States)

    Pfeil, W. H.; Athans, M.; Spang, H. A., III

    1986-01-01

    The design of scalar and multi-variable feedback control systems for the GE T700 turboshaft engine coupled to a helicopter rotor system is examined. A series of linearized models are presented and analyzed. Robustness and performance specifications are posed in the frequency domain. The linear-quadratic-Gaussian with loop-transfer-recovery (LQG/LTR) methodology is used to obtain a sequence of three feedback designs. Even in the single-input/single-output case, comparison of the current control system with that derived from the LQG/LTR approach shows significant performance improvement. The multi-variable designs, evaluated using linear and nonlinear simulations, show even more potential for performance improvement.

  5. Analysis on the sequence of Ty1-copia retrotransposon LTR10 and its genetic diversity in Malus genus%苹果Ty1-copia类逆转座子LTR10序列及其在苹果属植物中的遗传多样性分析

    Institute of Scientific and Technical Information of China (English)

    孙俊; 房经贵; 王飞; 孙其宝; 章镇; 王昆

    2010-01-01

    应用改良的Pearce方法分离苹果Tyl-copia类逆转座子RNaseH-LTRs,分离到的RNaseH-LTR10序列已在GenBank注册(登录号DQ534515),该序列长度为299 bp.分析结果表明其5'端为含有终止密码子的RNaseH基因,PPT(polypurine tract)之后是3'-LTR,PPT起始于终止密码子内10 bp处,3'-LTR的起始标志末端倒转重复序列(inverted repeat,IR)TG紧随其后.LTR10的正链和反链均含有多个启动子的特征结构TATA box和CAAT box,α-淀粉酶启动子的保守序列及受不同胁迫条件作用的调控元件,如AuxRE、ABRE、HSE等.利用S-SAP技术研究了LTR10逆转座子在苹果属8个野生种和22个栽培品种中的遗传多样性,多态性片段比例为86.5%;品种长祝较祝光少1条约400 bp的特异性扩增条带.

  6. Unbiased proteomic analysis of proteins interacting with the HIV-1 5′LTR sequence: role of the transcription factor Meis

    Science.gov (United States)

    Tacheny, A.; Michel, S.; Dieu, M.; Payen, L.; Arnould, T.; Renard, P.

    2012-01-01

    To depict the largest picture of a core promoter interactome, we developed a one-step DNA-affinity capture method coupled with an improved mass spectrometry analysis process focused on the identification of low abundance proteins. As a proof of concept, this method was developed through the analysis of 230 bp contained in the 5′long terminal repeat (LTR) of the human immunodeficiency virus 1 (HIV-1). Beside many expected interactions, many new transcriptional regulators were identified, either transcription factors (TFs) or co-regulators, which interact directly or indirectly with the HIV-1 5′LTR. Among them, the homeodomain-containing TF myeloid ectopic viral integration site was confirmed to functionally interact with a specific binding site in the HIV-1 5′LTR and to act as a transcriptional repressor, probably through recruitment of the repressive Sin3A complex. This powerful and validated DNA-affinity approach could also be used as an efficient screening tool to identify a large set of proteins that physically interact, directly or indirectly, with a DNA sequence of interest. Combined with an in silico analysis of the DNA sequence of interest, this approach provides a powerful approach to select the interacting candidates to validate functionally by classical approaches. PMID:22904091

  7. The evolutionary dynamics of autonomous non-LTR retrotransposons in the lizard Anolis carolinensis shows more similarity to fish than mammals.

    Science.gov (United States)

    Novick, Peter A; Basta, Holly; Floumanhaft, Mark; McClure, Marcella A; Boissinot, Stéphane

    2009-08-01

    The genome of the lizard Anolis carolinensis (the green anole) is the first nonavian reptilian genome sequenced. It offers a unique opportunity to comparatively examine the evolution of amniote genomes. We analyzed the abundance and diversity of non-LTR (long terminal repeat) retrotransposons in the anole using the Genome Parsing Suite. We found that the anole genome contains an extraordinary diversity of elements. We identified 46 families of elements representing five clades (L1, L2, CR1, RTE, and R4). Within most families, elements are very similar to each other suggesting that they have been inserted recently. The rarity of old elements suggests a high rate of turnover, the insertion of new elements being offset by the loss of element-containing loci. Consequently, non-LTR retrotransposons accumulate in the anole at a low rate and are found in low copy number. This pattern of diversity shows some striking similarity with the genome of teleostean fish but contrasts greatly with the low diversity and high copy number of mammalian L1 elements, suggesting a fundamental difference in the way mammals and nonmammalian vertebrates interact with their genomic parasites. The scarcity of divergent elements in anoles suggests that insertions have a deleterious effect and are eliminated by natural selection. We propose that the low abundance of non-LTR retrotransposons in the anole is related directly or indirectly to a higher rate of ectopic recombination in the anole relative to mammals.

  8. Identification and Structural Analysis of a Class of Potentially Transposable Solo-LTR in Rice Genome%水稻基因组中一类具有潜在转座活性的S010-LTR的结构分析和鉴定

    Institute of Scientific and Technical Information of China (English)

    周波; 陈泽华; 韩斌; 洪国藩

    2001-01-01

    Two solo-LTRs, named SLTR1 and SLTR2, were found in BAC t17804 and q5343 on rice chromosome 4, respectively. SLTR1 is in a 18 S rRNA gene and $LTR2 is in a retrotransposon. They share sequence homology and show sequence similarity 89.1% and 70.1% to the LTR of rice retrotransposon RIRE8,respectively. SLTR1 and SLTR2 are of gypsy retrotransposons of rice. They are both highly repetitive sequences and widely distributed in the rice genome, as shown by hybridization with specific probes of SLTR1 and SLTR2. Using PCR amplication with primers on flanking sequences of SLTR1 and SLTR2, no bands corresponding to those of BACs were amplified using the rice genomic DNA as template. SLTR1 and SLTR2 did not locate in the relative loci of the rice genome, as supported by hybridization with specific probes of genes interrupted by them. Obviously, SLTR1 and SLTR2 reported here came from different loci of the genome by the transposition. These solo-LTRs may be useful for our rice genome studies.%在水稻4号染色体两个BAC克隆序列分析中,发现了两个solo-LTR,分别命名为SLTR1和SLTR2。它们分别位于水稻18 S rRNA基因和一逆转座子内部。序列比较发现,SLTR1和SLTR2存在着较高的同源性,并与水稻逆转座子RIRE8的LTR序列高度同源,分别为89.1%和70.1%,它们属于一类水稻gypsy类型逆转座子。利用SITR1和SLTR2与水稻DNA杂交,结果显示两者广泛分布于水稻基因组中,是一类高拷贝重复序列。分别利用SLTR1和SLTR2的两侧特异性序列设计引物进行PCR扩增,结果发现在基因组的相应位置并不存在SLTR1或SITR2;利用它们两侧被打断基因的特异性片段杂交基因组DNA,得到了同样的的结果。这意味着,SITR1和SLTR2来源于基因组的其它位置,并通过某种转座的过程进入18 S rRNA基因和另一逆转座子内部。Solo-LTR存在着这种潜在的转座活性,对于进一步研究solo-LTR的来源以及其在基因组

  9. Cognitive Function Related to the Sirh11/Zcchc16 Gene Acquired from an LTR Retrotransposon in Eutherians.

    Directory of Open Access Journals (Sweden)

    Masahito Irie

    2015-09-01

    Full Text Available Gene targeting of mouse Sushi-ichi-related retrotransposon homologue 11/Zinc finger CCHC domain-containing 16 (Sirh11/Zcchc16 causes abnormal behaviors related to cognition, including attention, impulsivity and working memory. Sirh11/Zcchc16 encodes a CCHC type of zinc-finger protein that exhibits high homology to an LTR retrotransposon Gag protein. Upon microdialysis analysis of the prefrontal cortex region, the recovery rate of noradrenaline (NA was reduced compared with dopamine (DA after perfusion of high potassium-containing artificial cerebrospinal fluid in knockout (KO mice. These data indicate that Sirh11/Zcchc16 is involved in cognitive function in the brain, possibly via the noradrenergic system, in the contemporary mouse developmental systems. Interestingly, it is highly conserved in three out of the four major groups of the eutherians, euarchontoglires, laurasiatheria and afrotheria, but is heavily mutated in xenarthran species such as the sloth and armadillo, suggesting that it has contributed to brain evolution in the three major eutherian lineages, including humans and mice. Sirh11/Zcchc16 is the first SIRH gene to be involved in brain function, instead of just the placenta, as seen in the case of Peg10, Peg11/Rtl1 and Sirh7/Ldoc1.

  10. Mycobacterial and HIV infections up-regulated human zinc finger protein 134, a novel positive regulator of HIV-1 LTR activity and viral propagation.

    Directory of Open Access Journals (Sweden)

    Ronald Benjamin

    Full Text Available BACKGROUND: Concurrent occurrence of HIV and Tuberculosis (TB infections influence the cellular environment of the host for synergistic existence. An elementary approach to understand such coalition at the molecular level is to understand the interactions of the host and the viral factors that subsequently effect viral replication. Long terminal repeats (LTR of HIV genome serve as a template for binding trans-acting viral and cellular factors that regulate its transcriptional activity, thereby, deciding the fate of HIV pathogenesis, making it an ideal system to explore the interplay between HIV and the host. METHODOLOGY/PRINCIPAL FINDINGS: In this study, using biotinylated full length HIV-1 LTR sequence as bait followed by MALDI analyses, we identified and further characterized human-Zinc-finger-protein-134 (hZNF-134 as a novel positive regulator of HIV-1 that promoted LTR-driven transcription and viral production. Over-expression of hZNF-134 promoted LTR driven luciferase activity and viral transcripts, resulting in increased virus production while siRNA mediated knockdown reduced both the viral transcripts and the viral titers, establishing hZNF-134 as a positive effector of HIV-1. HIV, Mycobacteria and HIV-TB co-infections increased hZNF-134 expressions in PBMCs, the impact being highest by mycobacteria. Corroborating these observations, primary TB patients (n = 22 recorded extraordinarily high transcript levels of hZNF-134 as compared to healthy controls (n = 16. CONCLUSIONS/SIGNIFICANCE: With these observations, it was concluded that hZNF-134, which promoted HIV-1 LTR activity acted as a positive regulator of HIV propagation in human host. High titers of hZNF-134 transcripts in TB patients suggest that up-regulation of such positive effectors of HIV-1 upon mycobacterial infection can be yet another mechanism by which mycobacteria assists HIV-1 propagation during HIV-TB co-infections. hZNF-134, an uncharacterized host protein, thus

  11. Characterization of the transcriptome of the Asian gypsy moth Lymantria dispar identifies numerous transcripts associated with insecticide resistance.

    Science.gov (United States)

    Cao, ChuanWang; Sun, LiLi; Wen, RongRong; Shang, QingLi; Ma, Ling; Wang, ZhiYing

    2015-03-01

    Although the Asian gypsy moth Lymantria dispar causes extensive forest damage worldwide, little is known regarding the genes involved in its development or response to insecticides. Accordingly, characterization of the transcriptome of L. dispar larvae would promote the development of toxicological methods for its control. RNA-seq analysis of L. dispar larvae messenger RNA (mRNA) generated 62,063 unigenes with N50 of 993 bp, from which 23,975 unique sequences (E-value insecticide targets, or proteins involved in the metabolism of insecticides. Reads per kilobase of unigene length per million mapped reads (RPKM) analysis identified 39 high abundance transcripts, of which 27 exhibited significantly altered expression patterns across the egg, larvae, pupae, male and female adult stages. Our study provides the most comprehensive transcriptomic sequence resource for L. dispar, which will form the basis for future identification of candidate insecticide resistance genes in L. dispar.

  12. UNderstanding uptake of Immunisations in TravellIng aNd Gypsy communities (UNITING): a qualitative interview study.

    Science.gov (United States)

    Jackson, Cath; Dyson, Lisa; Bedford, Helen; Cheater, Francine M; Condon, Louise; Crocker, Annie; Emslie, Carol; Ireland, Lana; Kemsley, Philippa; Kerr, Susan; Lewis, Helen J; Mytton, Julie; Overend, Karen; Redsell, Sarah; Richardson, Zoe; Shepherd, Christine; Smith, Lesley

    2016-01-01

    BACKGROUND Gypsies, Travellers and Roma (referred to as Travellers) are less likely to access health services, including immunisation. To improve immunisation rates, we need to understand what helps and hinders individuals in these communities in taking up immunisations. AIMS (1) Investigate the barriers to and facilitators of acceptability and uptake of immunisations among six Traveller communities across four UK cities; and (2) identify possible interventions to increase uptake of immunisations in these Traveller communities that could be tested in a subsequent feasibility study. METHODS Three-phase qualitative study underpinned by the social ecological model. Phase 1: interviews with 174 Travellers from six communities: Romanian Roma (Bristol); English Gypsy/Irish Traveller (Bristol); English Gypsy (York); Romanian/Slovakian Roma (Glasgow); Scottish Showpeople (Glasgow); and Irish Traveller (London). Focus on childhood and adult vaccines. Phase 2: interviews with 39 service providers. Data were analysed using the framework approach. Interventions were identified using a modified intervention mapping approach. Phase 3: 51 Travellers and 25 service providers attended workshops and produced a prioritised list of potentially acceptable and feasible interventions. RESULTS There were many common accounts of barriers and facilitators across communities, particularly across the English-speaking communities. Scottish Showpeople were the most similar to the general population. Roma communities experienced additional barriers of language and being in a new country. Men, women and service providers described similar barriers and facilitators. There was widespread acceptance of childhood and adult immunisation, with current parents perceived as more positive than their elders. A minority of English-speaking Travellers worried about multiple/combined childhood vaccines, adult flu and whooping cough. Cultural concerns about vaccines offered during pregnancy and about human

  13. Ethnologie und Tsiganologie. Warum studieren wir „überrollte“ Kulturen?/Anthropology and Gypsy Studies. Why are we interested in „overrolled“ cultures?

    Directory of Open Access Journals (Sweden)

    Bernhard Streck

    2011-06-01

    Full Text Available Gypsy Studies (in German: Tsiganologie on the one side have a long tradition since the 18th century,on the other side it is still difficult to define it between social or cultural anthropology (in German:Ethnologie and sociology. The Leipzig Forum Tsiganologische Forschung has collected data whichcan be explained by a paradigm of order and para-order, two systems of thinking and doing closelyconnected and interdependent, but in an asymmetric way, comparable with the relation of mother anddaughter. Whereas anthropology tries to understand what sometimes is described as the recent losersof the civilization process, Gypsies represent a traditional skill of being marginalized, a certain wayof mastering para-orders, which could be relevant for all other “overrolled” communities.

  14. The Wide Distribution and Change of Target Specificity of R2 Non-LTR Retrotransposons in Animals

    Science.gov (United States)

    Seto, Yosuke; Fujiwara, Haruhiko

    2016-01-01

    Transposons, or transposable elements, are the major components of genomes in most eukaryotes. Some groups of transposons have developed target specificity that limits the integration sites to a specific nonessential sequence or a genomic region to avoid gene disruption caused by insertion into an essential gene. R2 is one of the most intensively investigated groups of sequence-specific non-LTR retrotransposons and is inserted at a specific site inside of 28S ribosomal RNA (rRNA) genes. R2 is known to be distributed among at least six animal phyla even though its occurrence is reported to be patchy. Here, in order to obtain a more detailed picture of the distribution of R2, we surveyed R2 using both in silico screening and degenerate PCR, particularly focusing on actinopterygian fish. We found two families of the R2C lineage from vertebrates, although it has previously only been found in platyhelminthes. We also revealed the apparent movement of insertion sites of a lineage of actinopterygian R2, which was likely concurrent with the acquisition of a 28S rRNA-derived sequence in their 3′ UTR. Outside of actinopterygian fish, we revealed the maintenance of a single R2 lineage in birds; the co-existence of four lineages of R2 in the leafcutter bee Megachile rotundata; the first examples of R2 in Ctenophora, Mollusca, and Hemichordata; and two families of R2 showing no target specificity. These findings indicate that R2 is relatively stable and universal, while differences in the distribution and maintenance of R2 lineages probably reflect characteristics of some combination of both R2 lineages and host organisms. PMID:27662593

  15. Evolutionary dynamics of the LTR retrotransposons roo and rooA inferred from twelve complete Drosophila genomes

    Directory of Open Access Journals (Sweden)

    de la Chaux Nicole

    2009-08-01

    Full Text Available Abstract Background Roo is the most abundant retrotransposon in the fruit fly Drosophila melanogaster. Its evolutionary origins and dynamics are thus of special interest for understanding the evolutionary history of Drosophila genome organization. We here study the phylogenetic distribution and evolution of roo, and its highly diverged relative rooA in 12 completely sequenced genomes of the genus Drosophila. Results We identify a total of 164 roo copies, 57 of which were previously unidentified copies that occur in 9 of the 12 genomes. Additionally we find 66 rooA copies in four genomes and remnants of this element in two additional genomes. We further increased the number of elements by searching for individual roo/rooA sequence domains. Most of our roo and rooA elements have been recently inserted. Most elements within a genome are highly similar. A comparison of the phylogenetic tree of our roo and rooA elements shows that the split between roo and rooA took place early in Drosophila evolution. Furthermore there is one incongruency between the species tree and the phylogenetic tree of the roo element. This incongruency regards the placement of elements from D. mojavensis, which are more closely related to D. melanogaster than elements from D. willistoni. Conclusion Within genomes, the evolutionary dynamics of roo and rooA range from recent transpositional activity to slow decay and extinction. Among genomes, the balance of phylogenetic evidence, sequence divergence distribution, and the occurrence of solo-LTR elements suggests an origin of roo/rooA within the Drosophila clade. We discuss the possibility of a horizontal gene transfer of roo within this clade.

  16. Efficacy of single and double applications of Foray 48B (bacillus thuringiensis) against the gypsy moth (lymantria dispar l. ) in Ontario. Information report No. O-X-423

    Energy Technology Data Exchange (ETDEWEB)

    1993-01-01

    In May 1991, an experimental aerial spraying program was conducted in Pembroke District to compare the efficacy of single and double applications of Foray 48B (Bacillus thuringiensis Berliner) (B.t.) against gypsy moths. Two blocks were treated with a double application of 30 BIU/2.4L/ha and six blocks (three early and three late) were treated with a single application of 50 BIU/4 L/ha. This report gives the results of the program.

  17. Distribution of a Ty3/gypsy-like retroelement on the A and B-chromosomes of Cestrum strigilatum Ruiz & Pav. and Cestrum intermedium Sendtn. (Solanaceae

    Directory of Open Access Journals (Sweden)

    Jéferson Nunes Fregonezi

    2007-01-01

    Full Text Available Retroelements are a diversified fraction of eukaryotic genomes, with the Ty1/copia and Ty3/gypsy groups being very common in a large number of plant genomes. We isolated an internal segment of the Ty3/gypsy retroelement of Cestrum strigilatum (Solanaceae using PCR amplification with degenerate primers for a conserved region of reverse transcriptase. The isolated segment (pCs12 was sequenced and showed similarity with Ty3/gypsy retroelements of monocotyledons and dicotyledons. This segment was used as probe in chromosomes of C. strigilatum and Cestrum intermedium. Diffuse hybridization signals were observed along the chromosomes and more accentuated terminal signals in some chromosome pairs, always associated with nucleolus organizer regions (NORs. The physical relationship between the hybridization sites of pCs12 and pTa71 ribosomal probes was assessed after sequential fluorescence in situ hybridization (FISH. Hybridization signals were also detected in the B chromosomes of these species, indicating an entail among the chromosomes of A complement and B-chromosomes.

  18. Marcadores virológicos no convencionales en pacientes infectados con el virus de la inmunodeficiencia humana: ADN HIV-T, ADN HIV- 2LTR y ARN de HIV Non conventional virological markers in HIV-infected patients: T-HIV DNA, 2LTR-HIV DNA and HIV RNA

    Directory of Open Access Journals (Sweden)

    Rosana Gariglio

    2004-10-01

    Full Text Available La terapia antirretroviral de alta eficacia (TAAE induce una reducción marcada y persistente de la viremia plasmática, contribuyendo a disminuir la mortalidad y morbilidad de los pacientes HIV-positivos. Así, la carga viral (CV es el método de referencia para evaluar la eficacia terapéutica. Sin embargo, aun en presencia de una TAAE eficiente no se ha logrado la erradicación viral. En este estudio analizamos la presencia del ADN total de HIV (ADN HIV-T, del ADN no integrado con 2LTR (ADN HIV-2LTR y del ARN de HIV, en un grupo de 55 pacientes HIV-positivos en distintos estadios clínicos, con y sin TAAE, mediante ensayos de PCR con revelado colorimétrico en microplaca, optimizados en nuestro laboratorio. La sensibilidad clínica del ARN del HIV fue evaluada con el bDNA, resultando del 74% y del 64%, respectivamente, con una concordancia del 85%. Este ensayo podría ser utilizado en el seguimiento de pacientes bajo TAAE. El ADN HIV-2LTR resultó positivo en el 54% aunque estuvo ausente en pacientes con elevada CV. Este marcador se consideraba un producto lábil y su presencia se asociaba a infección reciente. Sin embargo, actuales evidencias ponen en discusión su estabilidad por lo que su significado clínico debe ser reconsiderado. La ausencia del ADN HIV-2LTR en pacientes con CV detectable puede relacionarse con la heterogeneidad de la secuencia utilizada para su detección. El ADN HIV-T estuvo presente en el 100% de las muestras y resultaría relevante como marcador de remisión cuando se dispongan de terapias que efectivamente erradiquen la infección.Highly active antiretroviral therapy (HAART induces a persistent reduction of the plasmatic viremia, contributing to decrease mortality and morbidity of infected people with human immunodeficiency virus (HIV. Thus, viral load (VL is the reference method to evaluate therapy effectiveness. However, even in the presence of efficient HAART viral eradication was yet not achieved. In this

  19. Hybrid retroviral vector with MCK enhancers inserted in LTR for stable and specific expression of human factor IX in skeletal muscle

    Institute of Scientific and Technical Information of China (English)

    WANG Jian-min 王健民; HOU Jun 侯军; QIU Xin-fang 邱信芳; Kurachi Kotoku; XUE Jing-lun 薛京伦

    2004-01-01

    Background Retroviral vectors have been widely used to introduce foreign into various target cells in vitro, thus showing relatively high systemic delivery efficiency of various transgene products. The authors investigated the stability and efficiency of skeletal muscle-specific hybrid retroviral vectors in expression of human factor IX (FIX) in vitro and iv vivo. Methods FIX cDNA in LIXSN vector was replaced with a FIX minigene containing splicing donor and splicing acceptor sequence of first intron of human FIX gene. Two copies of muscle creatine kinase enhancer (MCK, Me2) were inserted in forward or reverse orientation at NheI site of 3' long terminal repeat (LTR), resulting in two hybrid vectors, which were designated as LMe2IXm2SN(F) and LMe2IXm2SN(R), respectively. The vectors were tested in vitro and in vivo for stability and muscle-specificity of factor IX expression with SCID mice. Results Muscle cells carrying vector with Me2 expressed significantly higher levels of FIX (up to 1800 ng/106.24h) than those without Me2, thus suggesting that Me2 could specifically increase expression level of FIX in muscle cells. Myoblasts transduced with LMe2IXm2SN(R) produced much less FIX in vivo in SCID mice than LMe2IXm2SN(F). One or two copies of Me2 sequence were deleted in myoblasts transduced with LMe2IXm2SN(R) without changing the orientation of Me2. Conclusions LTR inserted with MCK enhancers can specifically increase human FIX expression in skeletal muscle cells in vitro and in vivo, and MCK enhancer should be positioned in the same orientation as that of LTR promoter.

  20. Ex vivo response to histone deacetylase (HDAC inhibitors of the HIV long terminal repeat (LTR derived from HIV-infected patients on antiretroviral therapy.

    Directory of Open Access Journals (Sweden)

    Hao K Lu

    Full Text Available Histone deacetylase inhibitors (HDACi can induce human immunodeficiency virus (HIV transcription from the HIV long terminal repeat (LTR. However, ex vivo and in vivo responses to HDACi are variable and the activity of HDACi in cells other than T-cells have not been well characterised. Here, we developed a novel assay to determine the activity of HDACi on patient-derived HIV LTRs in different cell types. HIV LTRs from integrated virus were amplified using triple-nested Alu-PCR from total memory CD4+ T-cells (CD45RO+ isolated from HIV-infected patients prior to and following suppressive antiretroviral therapy. NL4-3 or patient-derived HIV LTRs were cloned into the chromatin forming episomal vector pCEP4, and the effect of HDACi investigated in the astrocyte and epithelial cell lines SVG and HeLa, respectively. There were no significant differences in the sequence of the HIV LTRs isolated from CD4+ T-cells prior to and after 18 months of combination antiretroviral therapy (cART. We found that in both cell lines, the HDACi panobinostat, trichostatin A, vorinostat and entinostat activated patient-derived HIV LTRs to similar levels seen with NL4-3 and all patient derived isolates had similar sensitivity to maximum HDACi stimulation. We observed a marked difference in the maximum fold induction of luciferase by HDACi in HeLa and SVG, suggesting that the effect of HDACi may be influenced by the cellular environment. Finally, we observed significant synergy in activation of the LTR with vorinostat and the viral protein Tat. Together, our results suggest that the LTR sequence of integrated virus is not a major determinant of a functional response to an HDACi.

  1. A subtelomeric non-LTR retrotransposon Hebe in the bdelloid rotifer Adineta vaga is subject to inactivation by deletions but not 5' truncations

    Directory of Open Access Journals (Sweden)

    Gladyshev Eugene A

    2010-04-01

    Full Text Available Abstract Background Rotifers of the class Bdelloidea are microscopic freshwater invertebrates best known for: their capacity for anhydrobiosis; the lack of males and meiosis; and for the ability to capture genes from other non-metazoan species. Although genetic exchange between these animals might take place by non-canonical means, the overall lack of meiosis and syngamy should greatly impair the ability of transposable elements (TEs to spread in bdelloid populations. Previous studies demonstrated that bdelloid chromosome ends, in contrast to gene-rich regions, harbour various kinds of TEs, including specialized telomere-associated retroelements, as well as DNA TEs and retrovirus-like retrotransposons which are prone to horizontal transmission. Vertically-transmitted retrotransposons have not previously been reported in bdelloids and their identification and studies of the patterns of their distribution and evolution could help in the understanding of the high degree of TE compartmentalization within bdelloid genomes. Results We identified and characterized a non-long terminal repeat (LTR retrotransposon residing primarily in subtelomeric regions of the genome in the bdelloid rotifer Adineta vaga. Contrary to the currently prevailing views on the mode of proliferation of non-LTR retrotransposons, which results in frequent formation of 5'-truncated ('dead-on-arrival' copies due to the premature disengagement of the element-encoded reverse transcriptase from its template, this non-LTR element, Hebe, is represented only by non-5'-truncated copies. Most of these copies, however, were subject to internal deletions associated with microhomologies, a hallmark of non-homologous end-joining events. Conclusions The non-LTR retrotransposon Hebe from the bdelloid rotifer A. vaga was found to undergo frequent microhomology-associated deletions, rather than 5'-terminal truncations characteristic of this class of retrotransposons, and to exhibit preference for

  2. Deletion of the LTR enhancer/promoter has no impact on the integration profile of MLV vectors in human hematopoietic progenitors.

    Directory of Open Access Journals (Sweden)

    Arianna Moiani

    Full Text Available Moloney murine leukemia virus (MLV-derived gamma-retroviral vectors integrate preferentially near transcriptional regulatory regions in the human genome, and are associated with a significant risk of insertional gene deregulation. Self-inactivating (SIN vectors carry a deletion of the U3 enhancer and promoter in the long terminal repeat (LTR, and show reduced genotoxicity in pre-clinical assays. We report a high-definition analysis of the integration preferences of a SIN MLV vector compared to a wild-type-LTR MLV vector in the genome of CD34(+ human hematopoietic stem/progenitor cells (HSPCs. We sequenced 13,011 unique SIN-MLV integration sites and compared them to 32,574 previously generated MLV sites in human HSPCs. The SIN-MLV vector recapitulates the integration pattern observed for MLV, with the characteristic clustering of integrations around enhancer and promoter regions associated to H3K4me3 and H3K4me1 histone modifications, specialized chromatin configurations (presence of the H2A.Z histone variant and binding of RNA Pol II. SIN-MLV and MLV integration clusters and hot spots overlap in most cases and are generated at a comparable frequency, indicating that the reduced genotoxicity of SIN-MLV vectors in hematopoietic cells is not due to a modified integration profile.

  3. Whole genome surveys of rice, maize and sorghum reveal multiple horizontal transfers of the LTR-retrotransposon Route66 in Poaceae

    Directory of Open Access Journals (Sweden)

    Manicacci Domenica

    2009-03-01

    Full Text Available Abstract Background Horizontal transfers (HTs refer to the transmission of genetic material between phylogenetically distant species. Although most of the cases of HTs described so far concern genes, there is increasing evidence that some involve transposable elements (TEs in Eukaryotes. The availability of the full genome sequence of two cereal species, (i.e. rice and Sorghum, as well as the partial genome sequence of maize, provides the opportunity to carry out genome-wide searches for TE-HTs in Poaceae. Results We have identified an LTR-retrotransposon, that we named Route66, with more than 95% sequence identity between rice and Sorghum. Using a combination of in silico and molecular approaches, we are able to present a substantial phylogenetic evidence that Route66 has been transferred horizontally between Panicoideae and several species of the genus Oryza. In addition, we show that it has remained active after these transfers. Conclusion This study constitutes a new case of HTs for an LTR-retrotransposon and we strongly believe that this mechanism could play a major role in the life cycle of transposable elements. We therefore propose to integrate classe I elements into the previous model of transposable element evolution through horizontal transfers.

  4. B-oligomer of pertussis toxin inhibits HIV-1 LTR-driven transcription through suppression of NF-kappaB p65 subunit activity.

    Science.gov (United States)

    Iordanskiy, Sergey; Iordanskaya, Tatyana; Quivy, Vincent; Van Lint, Carine; Bukrinsky, Michael

    2002-10-10

    The binding subunit of pertussis toxin (PTX-B) has been shown recently to inhibit the entry and postentry events in HIV-1 replication in primary T lymphocytes and monocyte-derived macrophages. While the effect of PTX-B on HIV-1 entry was shown to involve CCR5 desensitization, the mechanism of postentry inhibition remained unclear. In T lymphocytes, PTX-B affected transcription or stability of Tat-stimulated HIV-1 mRNAs. In this study, we sought to identify the mechanism of postentry inhibition of HIV-1 replication by PTX-B in U-937 promonocytic cells. We demonstrate that in these cells PTX-B inhibits expression of luciferase reporter gene controlled by the HIV-1 LTR promoter. This effect is Tat-independent and is not restricted to the HIV-1 LTR promoter. Instead, PTX-B activity is mediated through suppression of the cellular transcription factor, NF-kappaB. PTX-B inhibits phosphorylation and nuclear translocation of the p65 subunit of NF-kappaB. This effect is independent of the cytoplasmic NF-kappaB inhibitor, IkappaBalpha, as PTX-B stimulates phosphorylation and subsequent degradation of this protein. The suppressive activity of PTX-B on NF-kappaB p65 phosphorylation and nuclear translocation is delayed, suggesting that PTX-B signaling might initiate synthesis and cytoplasmic accumulation of a p65 phosphorylation inhibitor.

  5. Influence of Genotype, Environment, and Gypsy Moth Herbivory on Local and Systemic Chemical Defenses in Trembling Aspen (Populus tremuloides).

    Science.gov (United States)

    Rubert-Nason, Kennedy F; Couture, John J; Major, Ian T; Constabel, C Peter; Lindroth, Richard L

    2015-07-01

    Numerous studies have explored the impacts of intraspecific genetic variation and environment on the induction of plant chemical defenses by herbivory. Relatively few, however, have considered how those factors affect within-plant distribution of induced defenses. This work examined the impacts of plant genotype and soil nutrients on the local and systemic phytochemical responses of trembling aspen (Populus tremuloides) to defoliation by gypsy moth (Lymantria dispar). We deployed larvae onto foliage on individual tree branches for 15 days and then measured chemistry in leaves from: 1) branches receiving damage, 2) undamaged branches of insect-damaged trees, and 3) branches of undamaged control trees. The relationship between post-herbivory phytochemical variation and insect performance also was examined. Plant genotype, soil nutrients, and damage all influenced phytochemistry, with genotype and soil nutrients being stronger determinants than damage. Generally, insect damage decreased foliar nitrogen, increased levels of salicinoids and condensed tannins, but had little effect on levels of a Kunitz trypsin inhibitor, TI3. The largest damage-mediated tannin increases occurred in leaves on branches receiving damage, whereas the largest salicinoid increases occurred in leaves of adjacent, undamaged branches. Foliar nitrogen and the salicinoid tremulacin had the strongest positive and negative relationships, respectively, with insect growth. Overall, plant genetics and environment concomitantly influenced both local and systemic phytochemical responses to herbivory. These findings suggest that herbivory can contribute to phytochemical heterogeneity in aspen foliage, which may in turn influence future patterns of herbivory and nutrient cycling over larger spatial scales.

  6. Effects of temperature and dietary nitrogen on genetic variation and covariation in gypsy moth larval performance traits

    Directory of Open Access Journals (Sweden)

    Janković-Tomanić Milena

    2012-01-01

    Full Text Available To assess the plastic and genetic components of variation in responses of gypsy moth (Lymantria dispar 4th instar larvae to temperature and food quality, we applied a split-family four-environment experimental design where full-sibs were reared on two constant temperatures (23°C and 28°C and two concentrations of dietary nitrogen (1.5 and 3.7% dry weight. A temperature of 28°C and low dietary nitrogen decreased larval weight and prolonged larval developmental time, while viability was not affected. Only a marginally significant interaction between the two environmental factors was found for larval weight. The broad-sense heritability for larval developmental time did not change across environments, and across-environment genetic correlations were close to one. Heritability for larval weight depended on environmental and across-environmental genetic correlations that were not significant. There was no evidence of a trade-off between developmental time and larval weight. The implications of the obtained results for the evolution of phenotypic plasticity in complex environments are discussed. [Acknowledgments. This work was supported by Ministry of Education and Science of Serbia, grant No. 173027.

  7. Evaluation of the Effects of Light Intensity and Time Interval After the Start of Scotophase on the Female Flight Propensity of Asian Gypsy Moth (Lepidoptera: Erebidae).

    Science.gov (United States)

    Chen, Fang; Shi, Juan; Keena, Melody

    2016-04-01

    Asian gypsy moth, Lymantria dispar L. (Lepidoptera: Erebidae), females are capable of flight, but little is known about what causes the variation in flight propensity that has been observed. The female flight propensity and capability of Asian gypsy moth from seven geographic populations (three from China, two from Russia, one from Japan, and one from Korea) were compared under all combinations of three light intensities (0.05, 0.10, and 0.40 lux) and during three time intervals after the start of scotophase. A total of 567 females were flight tested. Female flight propensity, time to initiate walking, fanning, and flying, and duration of fanning differed significantly among geographic populations. Females were less likely to voluntarily fly during the 0-1-h time interval after the start of scotophase than during the later time intervals (1-2 and 2-3 h), suggesting that the light intensity cue has to occur at the correct time after the expected start of scotophase for flight initiation. Light intensity did not significantly affect the proportion of females that voluntarily flew, but did impact the timing of the walking and fanning preflight behaviors. The interaction between light intensity and time interval after the start of scotophase had a significant effect on the proportion of females that fanned. The proportion of females with sustained flight capability varied among the populations evaluated. These results may aid in determining the risk of Asian gypsy moth dispersal, but further work is needed to assess other factors that play a role in flight propensity.

  8. A Multi-Species TaqMan PCR Assay for the Identification of Asian Gypsy Moths (Lymantria spp.) and Other Invasive Lymantriines of Biosecurity Concern to North America

    Science.gov (United States)

    Stewart, Donald; Zahiri, Reza; Djoumad, Abdelmadjid; Freschi, Luca; Lamarche, Josyanne; Holden, Dave; Cervantes, Sandra; Ojeda, Dario I.; Potvin, Amélie; Nisole, Audrey; Béliveau, Catherine; Capron, Arnaud; Kimoto, Troy; Day, Brittany; Yueh, Hesther; Duff, Cameron; Levesque, Roger C.; Hamelin, Richard C.; Cusson, Michel

    2016-01-01

    Preventing the introduction and establishment of forest invasive alien species (FIAS) such as the Asian gypsy moth (AGM) is a high-priority goal for countries with extensive forest resources such as Canada. The name AGM designates a group of closely related Lymantria species (Lepidoptera: Erebidae: Lymantriinae) comprising two L. dispar subspecies (L. dispar asiatica, L. dispar japonica) and three closely related Lymantria species (L. umbrosa, L. albescens, L. postalba), all considered potential FIAS in North America. Ships entering Canadian ports are inspected for the presence of suspicious gypsy moth eggs, but those of AGM are impossible to distinguish from eggs of innocuous Lymantria species. To assist regulatory agencies in their identification of these insects, we designed a suite of TaqMan® assays that provide significant improvements over existing molecular assays targeting AGM. The assays presented here can identify all three L. dispar subspecies (including the European gypsy moth, L. dispar dispar), the three other Lymantria species comprising the AGM complex, plus five additional Lymantria species that pose a threat to forests in North America. The suite of assays is built as a “molecular key” (analogous to a taxonomic key) and involves several parallel singleplex and multiplex qPCR reactions. Each reaction uses a combination of primers and probes designed to separate taxa through discriminatory annealing. The success of these assays is based on the presence of single nucleotide polymorphisms (SNPs) in the 5’ region of mitochondrial cytochrome c oxidase I (COI) or in its longer, 3’ region, as well as on the presence of an indel in the “FS1” nuclear marker, generating North American and Asian alleles, used here to assess Asian introgression into L. dispar dispar. These assays have the advantage of providing rapid and accurate identification of ten Lymantria species and subspecies considered potential FIAS. PMID:27513667

  9. The 73 kDa subunit of the CPSF complex binds to the HIV-1 LTR promoter and functions as a negative regulatory factor that is inhibited by the HIV-1 Tat protein.

    Science.gov (United States)

    de la Vega, Laureano; Sánchez-Duffhues, Gonzalo; Fresno, Manuel; Schmitz, M Lienhard; Muñoz, Eduardo; Calzado, Marco A

    2007-09-14

    Gene expression in eukaryotes requires the post-transcriptional cleavage of mRNA precursors into mature mRNAs. The cleavage and polyadenylation specificity factor (CPSF) is critical for this process and its 73 kDa subunit (CPSF-73) mediates cleavage coupled to polyadenylation and histone pre-mRNA processing. Using CPSF-73 over-expression and siRNA-mediated knockdown experiments, this study identifies CPSF-73 as an important regulatory protein that represses the basal transcriptional activity of the HIV-1 LTR promoter. Similar results were found with over-expression of the CPSF-73 homologue RC-68, but not with CPSF 100 kDa subunit (CPSF-100) and RC-74. Chromatin immunoprecipitation assays revealed the physical interaction of CPSF-73 with the HIV-1 LTR promoter. Further experiments revealed indirect CPSF-73 binding to the region between -275 to -110 within the 5' upstream region. Functional assays revealed the importance for the 5' upstream region (-454 to -110) of the LTR for CPSF-73-mediated transcription repression. We also show that HIV-1 Tat protein interacts with CPSF-73 and counteracts its repressive activity on the HIV-1 LTR promoter. Our results clearly show a novel function for CPSF-73 and add another candidate protein for explaining the molecular mechanisms underlying HIV-1 latency.

  10. LT(K63/R72), a New Mutant of Escherichia coli Heat-labile Enterotoxin,Exhibits Characteristics More Similar to LT(K63) than LT(R72)

    Institute of Scientific and Technical Information of China (English)

    Qiang FENG; Jun YANG; Ping LUO; Wei-Jun ZHANG; Quan-Ming ZOU

    2005-01-01

    LT(K63), a non-toxic mutant and LT(R72), a low toxic mutant of E. coli heat-labile enterotoxin are frequently used mucosal adjuvants. In many cases, the adjuvanticity of LT(K63) is lower than that of LT (R72), but LT(K63), which induces a mixed Th1/Th2 response, exhibits a higher level of protection than LT (R72) which induces a polarized Th2-type response. To utilize the advantages of both adjuvants, a doublemutation LT(K63/R72) was generated and purified. The characterization results showed that there was no significant difference in production rate and immunogenicity between wild type LT and LT mutants. The results also showed that the toxicity and the trypsin sensitivity of LT(K63/R72) are between that of LT(K63)and LT(R72). Using HPLC, when samples in an OHpak SB-800 column were eluted by denatural buffer (TEAN containing 10 mg/ml SDS), we found the stability of LT(K63/R72) was higher than that of LT(R72)and lower than that of LT(K63). Through further analyzes, we found that LT(K63/R72) exhibits characteristics more closely related to LT(K63) than LT(R72).

  11. Os ciganos entre perseguição e emancipação The gypsies between persecution and emancipation

    Directory of Open Access Journals (Sweden)

    Serge Moscovici

    2009-12-01

    Full Text Available Toda sociedade que classifica os homens e separa os grupos autóctones dos grupos "estrangeiros" inclui um sistema de crenças, religiosas ou outras. Suas representações obedecem a uma norma que dá a seus atos um sentido ético. Esses atos não são cometidos por criminosos ou loucos, mas por pessoas que sabem o que é permitido ou proibido, qual é a diferença entre o bem e o mal. O ponto de partida das reflexões apresentadas é que estereótipos - categorias discriminando grupos em brancos e negros, cristãos e judeus, franceses e alemães, indígenas e espanhóis, ciganos e romenos, etc. - constituem, em suma, um modo de conhecimento com a função de opor os "semelhantes" preferidos aos "diferentes" desprezíveis, de distinguir aqueles que não são como nós.Every society that classifies mankind and separates the autochthonous groups from the "foreign" groups includes a system of beliefs, being it religious or of another kind. Their representations obey a norm that gives their actions an ethical sense. Those actions are not committed by criminals or crazy people, but by the ones who know what it is allowed or forbidden, or what the difference between good and evil is. The starting point of the presented reflections is that stereotypes categories which discriminate groups in whites and blacks, Christians and Jews, Frenchmen and Germans, indigenous and Spaniards, gypsies and Rumanians etc. constitute, in short, a way of knowledge with the function of opposing the favorite "fellow creatures" to the despicable "different ones", to distinguish those who are not like us.

  12. Analysis on LTR Retrotransposons in Potato Genome%马铃薯全基因组LTR反转录转座子分析

    Institute of Scientific and Technical Information of China (English)

    李智菲; 李卫涛; 押辉远

    2013-01-01

    采用LTR-FINDER软件对马铃薯(Solanum tuberosum)全基因组中的LTR反转录转座子进行分析,共发现4 725个全长LTR反转录转座子,平均长度约7 393 bp,其中反转录转座子的LTR平均长度为786 bp,全长LTR反转录转座子总碱基数约占马铃薯全基因组碱基数的4.95%.系统发育分析结果显示马铃薯LTR反转录转座子具有较高的遗传多样性和异质性.

  13. Dual role of novel ingenol derivatives from Euphorbia tirucalli in HIV replication: inhibition of de novo infection and activation of viral LTR.

    Directory of Open Access Journals (Sweden)

    Celina M Abreu

    Full Text Available HIV infection is not cleared by antiretroviral drugs due to the presence of latently infected cells that are not eliminated with current therapies and persist in the blood and organs of infected patients. New compounds to activate these latent reservoirs have been evaluated so that, along with HAART, they can be used to activate latent virus and eliminate the latently infected cells resulting in eradication of viral infection. Here we describe three novel diterpenes isolated from the sap of Euphorbia tirucalli, a tropical shrub. These molecules, identified as ingenols, were modified at carbon 3 and termed ingenol synthetic derivatives (ISD. They activated the HIV-LTR in reporter cell lines and human PBMCs with latent virus in concentrations as low as 10 nM. ISDs were also able to inhibit the replication of HIV-1 subtype B and C in MT-4 cells and human PBMCs at concentrations of EC50 0.02 and 0.09 µM respectively, which are comparable to the EC50 of some antiretroviral currently used in AIDS treatment. Control of viral replication may be caused by downregulation of surface CD4, CCR5 and CXCR4 observed after ISD treatment in vitro. These compounds appear to be less cytotoxic than other diterpenes such as PMA and prostratin, with effective dose versus toxic dose TI>400. Although the mechanisms of action of the three ISDs are primarily attributed to the PKC pathway, downregulation of surface receptors and stimulation of the viral LTR might be differentially modulated by different PKC isoforms.

  14. 'If you feel that nobody wants you you'll withdraw into your own': Gypsies/Travellers, networks and healthcare utilisation.

    Science.gov (United States)

    Smith, David; Ruston, Annmarie

    2013-11-01

    Gypsies and Travellers are the unhealthiest group in British society, suffering from higher levels of physical and mental illness, lower life expectancy and with low levels of healthcare utilisation. They also continue to experience the highest level of prejudice and discrimination in society. While studies indicate that social networks play an important role in shaping health beliefs and the response to symptoms, evidence on the influence of networks on health is unclear and contradictory. This article draws on social network theory and research into the relation between discrimination and health to critically examine how networks mediate between collective experiences of racism and health-related behavior. Qualitative interviews with 39 adult Gypsies and Travellers were conducted in the South-East of England to explore the wider structural and institutional context and the influence those contexts play in shaping health beliefs and decisions whether to access formal health services. The findings indicate that the influence networks play in shaping health behaviour is dependent on the particular social context of the group and its status in relation to wider social structures, making generalization problematic.

  15. Canopy recovery of pedunculate oak, Turkey oak and beech trees after severe defoliation by gypsy moth (Lymantria dispar: Case study from Western Hungary

    Directory of Open Access Journals (Sweden)

    Csóka György

    2015-09-01

    Full Text Available We investigated the canopy recovery of 3 tree species (pedunculate oak, Turkey oak, European beech at two locations in the Veszprém county (Western Hungary after severe defoliation by gypsy moth caterpillars in the spring of 2005. The Turkey oak has evidently the best recovery potential, and it almost completely replaced the lost foliage in 4 months. The pedunculate oak and beech needed 2 years to reach the same level of recovery. The pedunculate oak suffered from a heavy infection of Microsphaera alphitoides after defoliation and it probably slowed down its recovery. Neither the presence of Agrilus biguttatus in the oak plot nor the appearance of Agrilus viridis in the beech plot was observed during the study period. Population density of the buprestid Coraebus floerentinus showed a considerable increase in the oak plot, but remained under the damage level. Neither other harmful appearance of other pests nor significant tree mortality were observed within 4 years from the defoliation. These results provide information for the evaluation of longer term influences of the gypsy moth defoliation and may support the decisions concerning pest control.

  16. Approaches to Working with Children, Young People and Families for Traveller, Irish Traveller, Gypsy, Roma and Show People Communities. A Literature Review Report for the Children's Workforce Development Council

    Science.gov (United States)

    Robinson, Mark; Martin, Kerry

    2008-01-01

    The Children's Workforce Development Council (CWDC) commissioned this literature review as the first part of a project exploring issues around and approaches to working with Travellers, Irish Travellers, Gypsies, Roma and Showpeople, and the support, training and other programs available to staff involved. The project is intended to contribute to…

  17. Useof phyto-attractant in monitoring and controlling gypsy moth%利用植物源引诱剂监测与控制舞毒蛾

    Institute of Scientific and Technical Information of China (English)

    李菁; 骆有庆; 石娟; 周娇; 王先礼; 马凌云; 陈超

    2011-01-01

    Trunk window traps baiting with plant volatile compounds from damaged Larix gmelinii (Rupr.) Rupr. branches were applied in L. gmelinii forests in Aershan area, Inner-Mongolia. The effects of phytoattractant, sex pheromone and their combination were used to test the effect of phyto-attractant on gypsy moth and the interaction of phyto-attractant and sex pheromone. The experiment was carried out in nine forest stands covering young, middle-aged and mature forests. Traps were also used in five other forests to test the effective distance of phyto-attractant. The results showed that the phyto-attractant could not exceed the attractive level of the sex pheromone except when the population size of the gypsy moth is very large. The phyto-attractant had an obvious synergistic effect on the sex pheromone. Gypsy moths 90 m away from the traps could be attracted with an optimum distance around 70 m. All of the attracted moths were males, most of which are virginal or not fully mated. The plant volatile compound had an obvious effect in monitoring and controlling the gypsy moth as a phyto-attractant, but it can also be applied as an accessory ingredient of sex pheromone in the management of the moth. The results also supported that our phyto-attractant can be developed as a pesticide for gypsy moth.%在内蒙古阿尔山林业局兴安落叶松纯林内,选取受害兴安落叶松针叶的挥发物并复配成引诱剂(植物源引诱剂),测定其对舞毒蛾成虫的引诱效果。试验一利用窗式诱捕器携带4种诱芯:1)植物源引诱剂(引诱剂I),2)舞毒蛾性信息素(引诱剂Ⅱ),3)前两者之结合(引诱剂Ⅲ),4)空白对照于9块样地(幼、中龄林和成熟林各3块)进行测定。试验二利用窗式诱捕器携带第1种诱芯在5块新样地中测定了植物源引诱剂的有效距离。试验三通过观测诱集到的舞毒蛾成虫交配或产卵(精子)状况从而确定植物源引诱剂

  18. Correlation between LTR point mutations and proviral load levels among Human T cell Lymphotropic Virus type 1 (HTLV-1 asymptomatic carriers

    Directory of Open Access Journals (Sweden)

    Neto Walter K

    2011-12-01

    Full Text Available Abstract Background In vitro studies have demonstrated that deletions and point mutations introduced into each 21 bp imperfect repeat of Tax-responsive element (TRE of the genuine human T-cell leukemia virus type I (HTLV-1 viral promoter abolishes Tax induction. Given these data, we hypothesized that similar mutations may affect the proliferation of HTLV-1i nfected cells and alter the proviral load (PvL. To test this hypothesis, we conducted a cross-sectional genetic analysis to compare the near-complete LTR nucleotide sequences that cover the TRE1 region in a sample of HTLV-1 asymptomatic carriers with different PvL burden. Methods A total of 94 asymptomatic HTLV-1 carriers with both sequence from the 5' long terminal repeat (LTR and a PvL for Tax DNA measured using a sensitive SYBR Green real-time PCR were studied. The 94 subjects were divided into three groups based on PvL measurement: 31 low, 29 intermediate, and 34 high. In addition, each group was compared based on sex, age, and viral genotypes. In another analysis, the median PvLs between individuals infected with mutant and wild-type viruses were compared. Results Using a categorical analysis, a G232A substitution, located in domain A of the TRE-1 motif, was detected in 38.7% (12/31, 27.5% (8/29, and 61.8% (21/34 of subjects with low, intermediate, or high PvLs, respectively. A significant difference in the detection of this mutation was found between subjects with a high or low PvL and between those with a high or intermediate PvL (both p p > 0.05. This result was confirmed by a non-parametric analysis that showed strong evidence for higher PvLs among HTLV-1 positive individuals with the G232A mutation than those without this mutation (p p > 0. 05. Conclusions The data described here show that changes in domain A of the HTLV-1 TRE-1 motif resulting in the G232A mutation may increase HTLV-1 replication in a majority of infected subjects.

  19. A highly conserved gene island of three genes on chromosome 3B of hexaploid wheat: diverse gene function and genomic structure maintained in a tightly linked block

    Directory of Open Access Journals (Sweden)

    Ma Wujun

    2010-05-01

    Full Text Available Abstract Background The complexity of the wheat genome has resulted from waves of retrotransposable element insertions. Gene deletions and disruptions generated by the fast replacement of repetitive elements in wheat have resulted in disruption of colinearity at a micro (sub-megabase level among the cereals. In view of genomic changes that are possible within a given time span, conservation of genes between species tends to imply an important functional or regional constraint that does not permit a change in genomic structure. The ctg1034 contig completed in this paper was initially studied because it was assigned to the Sr2 resistance locus region, but detailed mapping studies subsequently assigned it to the long arm of 3B and revealed its unusual features. Results BAC shotgun sequencing of the hexaploid wheat (Triticum aestivum cv. Chinese Spring genome has been used to assemble a group of 15 wheat BACs from the chromosome 3B physical map FPC contig ctg1034 into a 783,553 bp genomic sequence. This ctg1034 sequence was annotated for biological features such as genes and transposable elements. A three-gene island was identified among >80% repetitive DNA sequence. Using bioinformatics analysis there were no observable similarity in their gene functions. The ctg1034 gene island also displayed complete conservation of gene order and orientation with syntenic gene islands found in publicly available genome sequences of Brachypodium distachyon, Oryza sativa, Sorghum bicolor and Zea mays, even though the intergenic space and introns were divergent. Conclusion We propose that ctg1034 is located within the heterochromatic C-band region of deletion bin 3BL7 based on the identification of heterochromatic tandem repeats and presence of significant matches to chromodomain-containing gypsy LTR retrotransposable elements. We also speculate that this location, among other highly repetitive sequences, may account for the relative stability in gene order and

  20. Molecular identification of the genotype of gypsy moth larvae%舞毒蛾幼虫基因型的分子鉴定

    Institute of Scientific and Technical Information of China (English)

    林瑶; 雷桥; 朱雅君; 周国梁; 叶军; 易建平; 查利文; 杨轶

    2012-01-01

    To identify 2 Lepidoptera larvae intercepted in the red oak from Belgium,their morphological characters were identified and the comparative analysis between them and other gypsy moth samples was carried out through amplification and sequencing of the two genetic markers of their mitochondria and autosomes.The results showed that the larvae were hybrids of Lymantria dispar.%为鉴定来自比利时红橡木原木上截获的2头鳞翅目幼虫,通过形态特征鉴定及对样本线粒体和常染色体上两段分子标记进行扩增和测序,并与其他舞毒蛾样本进行比对与分析.结果表明:该样品为舞毒蛾幼虫,且为亚洲型和欧洲型的杂交种.

  1. Structural and Functional Difference of Pheromone Binding Proteins in Discriminating Chemicals in the Gypsy Moth, Lymantria Dispar

    Directory of Open Access Journals (Sweden)

    Yanxue Yu, Fei Ma, Yixia Cao, Junhua Zhang, Yongan Zhang, Shengnan Duan, Yadong Wei, Shuifang Zhu, Naizhong Chen

    2012-01-01

    Full Text Available Pheromone-binding proteins (PBPs of the gypsy moth, Lymantria dispar L., play an important role in olfaction. Here structures of PBPs were first built by Homology Modeling, and each model of PBPs had seven α-helices and a large hydrophobic cavity including 25 residues for PBP1 and 30 residues for PBP2. Three potential semiochemicals were first screened by CDOCKER program based on the PBP models and chemical database. These chemicals were Palmitic acid n-butyl ester (Pal, Bis(3,4-epoxycyclohexylmethyl adipate (Bis, L-trans-epoxysuccinyl-isoleucyl-proline methyl ester propylamide (CA-074. The analysis of chemicals docking the proteins showed one hydrogen bond was established between the residues Lys94 and (+-Disparlure ((+-D, and л-л interactions were present between Phe36 of PBP1 and (+-D. The Lys94 of PBP1 formed two and three hydrogen bonds with Bis and CA-074, respectively. There was no residue of PBP2 interacting with these four chemicals except Bis forming one hydrogen bond with Lys121. After simulating the conformational changes of LdisPBPs at pH7.3 and 5.5 by constant pH molecular dynamics simulation in implicit solvent, the N-terminal sequences of PBPs was unfolded, only having five α-helices, and PBP2 had larger binding pocket at 7.3 than PBP1. To investigate the changes of α-helices at different pH, far-UV and near-UV circular dichroism showed PBPs consist of α-helices, and the tertiary structures of PBP1 and PBP2 were influenced at pH7.3 and 5.5. The fluorescence binding assay indicated that PBP1 and PBP2 have similarly binding affinity to (+-D at pH 5.5 and 7.3, respectively. At pH 5.5, the dissociation constant of the complex between PBP1 and 2-decyl-1-oxaspiro [2.2] pentane (OXP1 was 0.68±0.01μM, for (+-D was 5.32±0.11μM, while PBP2 with OXP1 and (+-D were 1.88±0.02μM and 5.54±0.04μM, respectively. Three chemicals screened had higher affinity to PBP1 than (+-D except Pal at pH5.5, and had lower affinity than (+-D at p

  2. Response of the Gypsy Moth, Lymantria dispar to Transgenic Poplar, Populus simonii x P. nigra, Expressing Fusion Protein Gene of the Spider Insecticidal Peptide and Bt-toxin C-peptide

    OpenAIRE

    Cao, Chuan-Wang; Liu, Gui-Feng; Wang, Zhi-Ying; Yan, Shan-Chun; Ma, Ling; Yang, Chuan-Ping

    2010-01-01

    The response of the Asian gypsy moth Lymantria dispar (L.) (Lepidoptera: Lymantriidae) to a fusion gene consisting of the spider, Atrax robustus Simon (Araneae: Hexanthelidae) ω?-ACTX-Ar1 sequence coding for an ω?-atracotoxin and a sequence coding for the Bt-toxin C-peptide, expressed in transgenic poplar Populus simonii x P. nigra L. (Malphigiales: Salicaceae) was investigated. Individual performance, feeding selection, midgut proteinase activity and nutrition utilization were monitored. The...

  3. PwRn1, a novel Ty3/gypsy-like retrotransposon of Paragonimus westermani: molecular characters and its differentially preserved mobile potential according to host chromosomal polyploidy

    Directory of Open Access Journals (Sweden)

    Kong Yoon

    2008-10-01

    Full Text Available Abstract Background Retrotransposons have been known to involve in the remodeling and evolution of host genome. These reverse transcribing elements, which show a complex evolutionary pathway with diverse intermediate forms, have been comprehensively analyzed from a wide range of host genomes, while the information remains limited to only a few species in the phylum Platyhelminthes. Results A LTR retrotransposon and its homologs with a strong phylogenetic affinity toward CsRn1 of Clonorchis sinensis were isolated from a trematode parasite Paragonimus westermani via a degenerate PCR method and from an insect species Anopheles gambiae by in silico analysis of the whole mosquito genome, respectively. These elements, designated PwRn1 and AgCR-1 – AgCR-14 conserved unique features including a t-RNATrp primer binding site and the unusual CHCC signature of Gag proteins. Their flanking LTRs displayed >97% nucleotide identities and thus, these elements were likely to have expanded recently in the trematode and insect genomes. They evolved heterogeneous expression strategies: a single fused ORF, two separate ORFs with an identical reading frame and two ORFs overlapped by -1 frameshifting. Phylogenetic analyses suggested that the elements with the separate ORFs had evolved from an ancestral form(s with the overlapped ORFs. The mobile potential of PwRn1 was likely to be maintained differentially in association with the karyotype of host genomes, as was examined by the presence/absence of intergenomic polymorphism and mRNA transcripts. Conclusion Our results on the structural diversity of CsRn1-like elements can provide a molecular tool to dissect a more detailed evolutionary episode of LTR retrotransposons. The PwRn1-associated genomic polymorphism, which is substantial in diploids, will also be informative in addressing genomic diversification following inter-/intra-specific hybridization in P. westermani populations.

  4. TÜRKİYE ÇİNGENELERİNİN POLİTİKLEŞMESİ VE ÖRGÜTLENME DENEYİMLERİ - THE POLITICIZATION OF THE GYPSIES IN TURKEY AND THEIR ORGANIZATION EXPERIMENTS

    Directory of Open Access Journals (Sweden)

    Başak AKGÜL

    2010-07-01

    Full Text Available Özet:Türkiye’de Avrupa Birliği’ne uyum sürecindegerçekleştirilen reformlarla birlikte, örgütlenme özgürlüğününyasal alanı genişlemiş ve farklı kimliklere yeni ifade alanlarıaçılmıştır. Gerek bu sürecin bir ürünü olarak gündeme gelenimkanlar, gerekse kentsel dönüşüm projeleriyle beraberÇingenelerin yaşam alanının daralması, Çingene kimliğietrafında şekillenen bir örgütlenmeyi teşvik etmiştir. Buçalışmada, Türkiye’de yerel dernekler üzerinden gerçekleşenÇingene örgütlenmesinin genel seyri incelenmektedir. Bubağlamda, Avrupa’daki Çingene örgütlerinin genel eğilimininÇingeneleri etnik bir grup olarak değerlendirmek yönündeolduğu ve bir azınlık kimliğine atıf yaptığı, Türkiye Çingeneörgütlerinin ise topluluğu “Türk ulusunun bir parçası” olaraktanımladığı ve bu çerçevede ulusal vatandaşlık haklarınıntalebi ekseninde şekillenen bir duruş ortaya koyduğu iddiaedilmektedir.Abstract:Due to the reforms which were implemented inTurkey during the integration period with the EuropeanUnion, the legal sphere of the freedom of association wasextended and the representation of various identities wereenabled. The organizations that are based on Gypsy identityare one of the results of this process. Furthermore, therestriction of the Gypsies’ living space as a consequence ofurban transformation projects was one of the dynamics thatfostered their organization. In this study, the general story ofthe Gypsy organization in Turkey which was performedthrough the local associations is scrutinized. In this regard, itis asserted that, the Gypsy organizations in Europe evaluatethe Gypsies as an ethnic group and refer to a minority identity;whereas the Gypsy organizations in Turkey consider thecommunity as “a constituent of Turkish nation” and take aposition which is shaped within the framework of nationalcitizenship rights.

  5. Ecologically acceptable usage of derivatives of essential oil of sweet basil, Ocimum basilicum, as antifeedants against larvae of the gypsy moth, Lymantria dispar.

    Science.gov (United States)

    Popović, Zorica; Kostić, Miroslav; Stanković, Sladjan; Milanović, Slobodan; Sivčev, Ivan; Kostić, Igor; Kljajić, Petar

    2013-01-01

    Abstract Ethanol solutions of five fractions obtained from essential oil of sweet basil Ocimum basilicum L. (Lamiales: Lamiaceae) (F1-F5) were tested for their antifeedant properties against 2(nd) instar gypsy moth larvae, Lymantria dispar L. (Lepidoptera: Lymantriidae), in laboratory non-choice and feeding-choice experiments. Prior to bioassays, the chemical composition of each fraction was determined by gas chromatography analyses. Significant larval deterrence from feeding was achieved by application of tested solutions to fresh leaves of the host plant. The most effective were were F1 (0.5%), F4 (0.05, 0.1, and 0.5%), and F5 (0.1 and 0.5%), which provided an antifeedant index > 80% after five days. A low rate of larval mortality was observed in no-choice bioassay. In situ screening of chlorophyll fluorescence as an indicator of plant stress level (assessed by the induced fluorometry) confirmed that the tested compounds did not cause alternations in the photosynthetic efficiency of treated leaves.

  6. Enfermagem transcultural e as crenças, valores e práticas do povo cigano Transcultural nursing and the beliefs, mettles and background of gypsy population

    Directory of Open Access Journals (Sweden)

    Cristiane Giffoni Braga

    1997-12-01

    Full Text Available Trata-se de um estudo mini-etnográfico em enfermagem, onde é enfocada a crença de cuidados, valores, modo de vida, visão de mundo de um grupo cigano de origem ROM. Foi utilizado o referencial teórico de LEININGER para auxiliar a compreensão desta cultura, visualizando propostas nas ações e decisões do cuidado de modo a prover cuidados culturalmente congruentes. Propõe a autora algumas definições relativas à especificidade da cultura cigana no que diz respeito às formas culturais de prover cuidados , como subsídio para futuros estudos .It's a question, of mini-ethnographic study in nursing where it is emphasized the belief of cares, mettles, way of life, world sight of a group of gypsies of origin ROM. It was exploited the theoretical referential by LEININGER for helping the understanding of this culture, visualizing proposals in procedures and decisions of care, so as to provide cares culturally congruent. The author advocates some definitions referring to the especialty of gipsy cul ture concerning its cultural approaches when, providing care, as subsidized for future studies.

  7. High-risk sexual behavior, HIV/STD prevalence, and risk predictors in the social networks of young Roma (Gypsy) men in Bulgaria.

    Science.gov (United States)

    Amirkhanian, Yuri A; Kelly, Jeffrey A; Kabakchieva, Elena; Antonova, Radostina; Vassileva, Sylvia; Difranceisco, Wayne J; McAuliffe, Timothy L; Vassilev, Boyan; Petrova, Elena; Khoursine, Roman A

    2013-02-01

    Roma (Gypsies), the largest and most disadvantaged ethnic minority group in Europe, are believed to be vulnerable to HIV/AIDS. This study's aim was to examine HIV risk in 6 Roma male sociocentric networks (n = 405 men) in Bulgaria. Participants were interviewed concerning their risk practices and tested for HIV/STDs. High-risk sexual behaviors were common. Over 57% of men had multiple sexual partners in the past 3 months. Over one-third of men reported both male and female partners in the past year. Condom use was low. Greater levels of sexual risk were associated with lower intentions and self-efficacy for using condoms, drug use, having male partners, knowing HIV-positive persons, and having higher AIDS knowledge but no prior HIV testing. Two men had HIV infection, 3.7% gonorrhea, and 5.2% chlamydia. HIV prevention interventions directed toward high-risk social networks of Roma are needed before HIV infection becomes more widely established.

  8. LTR Control Methodologies for Microvibrations

    DEFF Research Database (Denmark)

    Aglietti, G.S.; Stoustrup, Jakob; Rogers, E.;

    1998-01-01

    Microvibrations at frequencies between 1 and 1000 Hz generated by on-board equipment can propagate through a satellite's structure and hence significantly reduce the performance of sensitive payloads. This paper describes a Lagrange-Rayleigh-Ritz method for developing models suitable for the design...

  9. Larval instar impact on host selection suitability of asian gypsy moth (Lymantria dispar asiatica, AGM).%亚洲型舞毒蛾幼虫寄主选择与龄期关系初探

    Institute of Scientific and Technical Information of China (English)

    魏靖; 骆有庆; 石娟; 王德鹏; 沈绍伟

    2012-01-01

    The Asian gypsy moth ( Lymantria dispar asiatica, AGM) is one of three gypsy found in Asia. European gypsy moth was introduced to USA which caused a great damage moth subspecies that is . Former study showed Asia gypsy moth could harm more kinds of trees than European gypsy moth. In this experiment, we choose 16 kinds of tree species to test host selection suitability which are common in USA or China. Statistics mortality rate, developmental duration and pupae weight to analyze the host impact on Asia gypsy moth. The result showed the larve of AGM feed on Acer saccharum, Betula platyphylla, Populus canadensi could complete life cycle. Larvae feed on Juniperus rigida, Ligustrum lucidum, Buxus megistophylla, Picea koraiensis, Albizia julibrissin, Lirioden- dron chinense × tulipifera, Pinus bungeana, Pinus massoniana and Pinus thunbergii all died before 2nd instar. Larvae feed on P. tabulaeformis, P. strobus and Diospyros kaki after 4th instar, mortality is lower than 2nd instar. Once the larve develop after 4th instar, host range is wider than 1 st and 2nd instar.%舞毒蛾是一种世界性的害虫,常被分为欧洲型和亚洲型2种类型,欧洲型舞毒蛾在传入美国之后造成了巨大危害。之前报道指出亚洲型舞毒蛾的寄主范围比欧洲型舞毒蛾的广,故造成的危害和损失更大,北美植物保护组织据此对中国的高风险港口实施了船舶特别检疫措施,对我国的进出口贸易产生了巨大影响。鉴于此,本实验以16种北美和中国常见的行道树种和绿化树种作为供试树种,分析了不同寄主植物对亚洲型舞毒蛾生长发育指标的影响规律。结果表明:饲喂白桦、加杨和糖槭的幼虫可以完成生活周期。饲喂杜松、女贞、大叶黄杨、红皮云杉、合欢、杂交鹅掌楸、马尾松、黑松和白皮松的幼虫在2龄以前全部死亡。虽然2龄以前幼虫饲喂北美乔松、油松和柿树后死亡率较高,但

  10. Review: KOUDELKA: GYPSIES%吉普赛人与共产主义的“城堡”——闲说新版的寇德卡摄影集《吉普赛人》

    Institute of Scientific and Technical Information of China (English)

    般若兔

    2012-01-01

    2011年末,寇德卡的著名摄影集《吉普赛人》 (Gypsies)新版问世,不知他心情如何.1 975年,这本书在巴黎出第一版时,寇大叔心里很是不爽: "以前,这些照片只有我自己、朋友和选择过的人才能看到,现在你只要有钱,就随便看了.拿着这本书,我感觉就像和一个妓女在一起."

  11. Juvenile hormone biosynthesis and secretion by the female Corpora allata of the larval gypsy moth, Lymantria dispar (L. ) utilizing in vitro organ culture

    Energy Technology Data Exchange (ETDEWEB)

    Jones, G.L.

    1986-01-01

    Junvenile hormone synthesis and secretion in the female larval gypsy moth was investigated. In vitro culturing methods were developed including: incubating 2 pair of CC-CA gland complexes in 50 ul of osmotically balanced Grace's insect medium containing 1 uCi /sup 3/H-methyl-methionine for 6 hr. JH homologues were identified and quantified using TLC and HPLC. In vitro methods were employed to investigate trends of JH secretion in 4th and ultimate female larval instar CA. Fourth instar CA produced JH peaks of 0.15 pmole/pr/hr between days 2 and 3, but the rate declined to half by day 4. Ultimate instar larvae began secreting 0.48 pmole/pr/hr, but by day 10, had decreased JH output to negligible levels which continued until pupation. Effects upon in vitro JH secretion produced by precocene II and caffeine were examined. Feulgen staining techniques revealed an equal number of cells (30) in 4th and last instar CA. Last instar Ca were 3 times larger than 4th in volume but their actual in vitro JH secretion at peak levels was only 20% greater. In vitro methods demonstrated that JH secretory trends differ in younger versus mature larval instars. Glandular volume increased in last instars but JH secretion was only 20% greater than in 4th's when compared on the basis of volume. Precocene II elicited a negative response on in vivo JH secretion at levels 10 times less than caffeine. Caffeine was judged not to significantly alter JH secretion.

  12. C. elegans germ cells show temperature and age-dependent expression of Cer1, a Gypsy/Ty3-related retrotransposon.

    Directory of Open Access Journals (Sweden)

    Shannon Dennis

    Full Text Available Virus-like particles (VLPs have not been observed in Caenorhabditis germ cells, although nematode genomes contain low numbers of retrotransposon and retroviral sequences. We used electron microscopy to search for VLPs in various wild strains of Caenorhabditis, and observed very rare candidate VLPs in some strains, including the standard laboratory strain of C. elegans, N2. We identified the N2 VLPs as capsids produced by Cer1, a retrotransposon in the Gypsy/Ty3 family of retroviruses/retrotransposons. Cer1 expression is age and temperature dependent, with abundant expression at 15°C and no detectable expression at 25°C, explaining how VLPs escaped detection in previous studies. Similar age and temperature-dependent expression of Cer1 retrotransposons was observed for several other wild strains, indicating that these properties are common, if not integral, features of this retroelement. Retrotransposons, in contrast to DNA transposons, have a cytoplasmic stage in replication, and those that infect non-dividing cells must pass their genomic material through nuclear pores. In most C. elegans germ cells, nuclear pores are largely covered by germline-specific organelles called P granules. Our results suggest that Cer1 capsids target meiotic germ cells exiting pachytene, when free nuclear pores are added to the nuclear envelope and existing P granules begin to be removed. In pachytene germ cells, Cer1 capsids concentrate away from nuclei on a subset of microtubules that are exceptionally resistant to microtubule inhibitors; the capsids can aggregate these stable microtubules in older adults, which exhibit a temperature-dependent decrease in egg viability. When germ cells exit pachytene, the stable microtubules disappear and capsids redistribute close to nuclei that have P granule-free nuclear pores. This redistribution is microtubule dependent, suggesting that capsids that are released from stable microtubules transfer onto new, dynamic microtubules

  13. Founder mutations in NDRG1 and HK1 genes are common causes of inherited neuropathies among Roma/Gypsies in Slovakia.

    Science.gov (United States)

    Gabrikova, Dana; Mistrik, Martin; Bernasovska, Jarmila; Bozikova, Alexandra; Behulova, Regina; Tothova, Iveta; Macekova, Sona

    2013-11-01

    Autosomal recessive forms of Charcot-Marie-Tooth disease (CMT) account for less than 10 % of all CMT cases, but are more frequent in the populations with a high rate of consanguinity. Roma (Gypsies) are a transnational minority with an estimated population of 10 to 14 million, in which a high degree of consanguineous marriages is a generally known fact. Similar to the other genetically isolated founder populations, the Roma harbour a number of unique or rare autosomal recessive disorders, caused by "private" founder mutations. There are three subtypes of autosomal recessive CMT with mutations private to the Roma population: CMT4C, CMT4D and CMT4G. We report on the molecular examination of four families of Roma origin in Slovakia with early-onset demyelinating neuropathy and autosomal recessive inheritance. We detected mutation p.R148X (g.631C>T) in the NDRG1 (NM_006096.3) gene in two families and mutation g.9712G>C in the HK1 (NM_033498) gene in the other two families. These mutations cause CMT4D and CMT4G, respectively. The success of molecular genetic analysis in all families confirms that autosomal recessive forms of CMT caused by mutations on the NDRG1 and HK1 genes are common causes of inherited neuropathies among Slovak Roma. Providing genetic analysis of these genes for patients with Roma origin as a common part of diagnostic procedure would contribute to a better rate of diagnosed cases of demyelinating neuropathy in Slovakia and in other countries with a Roma minority.

  14. Comparación entre los niños de etnia gitana e inmigrantes extranjeros ingresados en centros de protección por maltrato Comparison of Spanish gypsy and foreign immigrant maltreated children admitted to protection centers

    Directory of Open Access Journals (Sweden)

    Gonzalo Oliván-Gonzalvo

    2004-10-01

    Full Text Available Objetivos: Analizar las diferencias entre niños españoles de etnia gitana e inmigrantes extranjeros ingresados en centros de protección, respecto a las características del maltrato, los factores familiares y el estado de salud. Métodos: Se revisaron los expedientes sociosanitarios de 83 niños gitanos españoles y 105 niños inmigrantes que ingresaron desde enero de 1994 hasta diciembre de 2003 por maltratos en centros de protección del Instituto Aragonés de Servicios Sociales (IASS. El maltrato, sus tipos e indicadores se definieron y evaluaron según guías elaboradas por el IASS. Los factores familiares de riesgo sociosanitario asociados con el maltrato se determinaron según estudios nacionales. El estado de salud se evaluó según los protocolos elaborados por el IASS. Se realizó un estudio estadístico descriptivo y comparativo. Resultados: En los niños gitanos españoles predomina el grupo de edad de 0-5 años, mientras que en los inmigrantes es más frecuente el grupo de 12-17 años. En los niños gitanos españoles es también más frecuente la situación de negligencia física, emocional y/o abandono (p Objectives: To determine whether there are differences between Spanish gypsy and foreign immigrant children admitted to protection centers in the characteristics of the maltreatment, social and familial factors linked to maltreatment, and health status. Methods: The social and health reports of 83 Spanish gypsy and 105 foreign immigrant children admitted to protection centers of the Aragonese Institute for Social Services (Instituto Aragonés de Servicios Sociales [IASS] because of maltreatment from January 1994 to December 2003 were reviewed. Maltreatment, its types, and warning signs were defined and assessed according to the guidelines drawn up by the IASS. The social and familial risk factors associated with maltreatment were determined according to national studies. Health status was assessed following protocols used by

  15. Cocaine promotes both initiation and elongation phase of HIV-1 transcription by activating NF-κB and MSK1 and inducing selective epigenetic modifications at HIV-1 LTR

    Energy Technology Data Exchange (ETDEWEB)

    Sahu, Geetaram; Farley, Kalamo [Division of Infectious Diseases, Department of Medicine, George Washington University, Washington, DC (United States); El-Hage, Nazira [Virginia Commonwealth University, Richmond, VA (United States); Aiamkitsumrit, Benjamas; Fassnacht, Ryan [Division of Infectious Diseases, Department of Medicine, George Washington University, Washington, DC (United States); Kashanchi, Fatah [George Mason University, Manassas, VA (United States); Ochem, Alex [ICGEB, Wernher and Beit Building, Anzio Road, Observatory, 7925 Cape Town (South Africa); Simon, Gary L. [Division of Infectious Diseases, Department of Medicine, George Washington University, Washington, DC (United States); Karn, Jonathan [Case Western Reserve University, Cleveland, OH (United States); Hauser, Kurt F. [Virginia Commonwealth University, Richmond, VA (United States); Tyagi, Mudit, E-mail: tmudit@email.gwu.edu [Division of Infectious Diseases, Department of Medicine, George Washington University, Washington, DC (United States); Department of Microbiology, Immunology and Tropical Medicine, George Washington University, Washington, DC 20037 (United States)

    2015-09-15

    Cocaine accelerates human immunodeficiency virus (HIV-1) replication by altering specific cell-signaling and epigenetic pathways. We have elucidated the underlying molecular mechanisms through which cocaine exerts its effect in myeloid cells, a major target of HIV-1 in central nervous system (CNS). We demonstrate that cocaine treatment promotes HIV-1 gene expression by activating both nuclear factor-kappa B (NF-ĸB) and mitogen- and stress-activated kinase 1 (MSK1). MSK1 subsequently catalyzes the phosphorylation of histone H3 at serine 10, and p65 subunit of NF-ĸB at 276th serine residue. These modifications enhance the interaction of NF-ĸB with P300 and promote the recruitment of the positive transcription elongation factor b (P-TEFb) to the HIV-1 LTR, supporting the development of an open/relaxed chromatin configuration, and facilitating the initiation and elongation phases of HIV-1 transcription. Results are also confirmed in primary monocyte derived macrophages (MDM). Overall, our study provides detailed insights into cocaine-driven HIV-1 transcription and replication. - Highlights: • Cocaine induces the initiation phase of HIV transcription by activating NF-ĸB. • Cocaine induced NF-ĸB phosphorylation promotes its interaction with P300. • Cocaine enhances the elongation phase of HIV transcription by stimulating MSK1. • Cocaine activated MSK1 catalyzes the phosphorylation of histone H3 at its Ser10. • Cocaine induced H3S10 phosphorylation facilitates the recruitment of P-TEFb at LTR.

  16. The new 1.7 ltr. Zetec-SE engine for Ford`s sports coupe Puma; Der neue 1,7-l-Zetec-SE-Motor fuer das Sportcoupe Puma

    Energy Technology Data Exchange (ETDEWEB)

    Heuser, G. [Ford Werke AG, Koeln (Germany); Oppel, R. [Ford Werke AG, Koeln (Germany); Eden, M.; Farenden, G.; Warren, G.A. [Ford Werke AG, Koeln (Germany); Menne, R.J. [Ford Werke AG, Koeln (Germany)

    1997-04-01

    For the 1996 model year, as well as a much revised Fiesta, Ford has introduced an entire generation of newly-developed engines. These were four-valve engines with swept volumes of 1.25 and 1.4 litres. On the basis of these engines, in close collaboration with Yamaha Ford has developed a high-performance engine with a swept volume of 1.7 litres. This engine will be launched in the course of this year in the sports coupe based on the Fiesta. In this engine, Ford is using a continuously variable advance/retard adjustment of the inlet camshaft for the first time. The essential features of this new engine are presented in this article, focusing on the most important differences and innovations compared with the 1.25 ltr. and 1.4 ltr. engines. (orig.) [Deutsch] Mit dem Modelljahr 1996 fuehrte Ford zusammen mit dem stark ueberarbeiteten Fiesta eine komplett neu entwickelte Motorengeneration ein. Hierbei handelt es sich um Motoren in Vierventiltechnik mit Hubraeumen von 1,25 l und 1,4 l. Basierend auf diesen Motoren hat Ford in enger Zusammenarbeit mit Yamaha einen Hochleistungsmotor mit einem Hubraum von 1,7 l entwickelt. Er kommt im Verlauf dieses Jahres im auf dem Fiesta basierenden Sportcoupe zum Einsatz. Bei diesem Motor setzt Ford erstmals eine kontinuierlich einstellbare Einlassnockenwellen-Verstellung ein. In diesem Beitrag wird der neue Motor in seinen Grundzuegen vorgestellt. Den Schwerpunkt stellt jedoch die Darstellung der wichtigsten Unterschiede und Neuerungen im Vergleich zum 1,25-l- und zum 1,4-l-Motor dar. (orig.)

  17. Response of the gypsy moth, Lymantria dispar to transgenic poplar, Populus simonii x P. nigra, expressing fusion protein gene of the spider insecticidal peptide and Bt-toxin C-peptide.

    Science.gov (United States)

    Cao, Chuan-Wang; Liu, Gui-Feng; Wang, Zhi-Ying; Yan, Shan-Chun; Ma, Ling; Yang, Chuan-Ping

    2010-01-01

    The response of the Asian gypsy moth Lymantria dispar (L.) (Lepidoptera: Lymantriidae) to a fusion gene consisting of the spider, Atrax robustus Simon (Araneae: Hexanthelidae) ω-ACTX-Ar1 sequence coding for an ω-atracotoxin and a sequence coding for the Bt-toxin C-peptide, expressed in transgenic poplar Populus simonii x P. nigra L. (Malphigiales: Salicaceae) was investigated. Individual performance, feeding selection, midgut proteinase activity and nutrition utilization were monitored. The growth and development of L. dispar were significantly affected by continually feeding on the transgenic poplar, with the larval instars displaying significantly shorter developmental times than those fed on nontransgenic poplar, but pupation was delayed. Mortality was higher in populations fed transgenic poplar leaves, than for larvae fed nontransgenic poplar leaves. The cumulative mortality during all stages of larvae fed transgenic leaves was 92% compared to 16.7% of larvae on nontransgenic leaves. The highest mortality observed was 71.7% in the last larval instar stage. A two-choice test showed that fifth-instar larvae preferred to feed on nontransgenic leaves at a ratio of 1:1.4. Feeding on transgenic leaves had highly significant negative effects on relative growth of larvae, and the efficiency of conversion of ingested and digested food. Activity of major midgut proteinases was measured using substrates TAME and BTEE showed significant increases in tryptase and chymotrypsinlike activity (9.2- and 9.0-fold, respectively) in fifth-instar larvae fed on transgenic leaves over control. These results suggest transgenic poplar is resistant to L. dispar, and the mature L. dispar may be weakened by the transgenic plants due to Bt protoxins activated by elevated major midgut proteinase activity. The new transgenic poplar expressing fusion protein genes of Bt and a new spider insecticidal peptide are good candidates for managing gypsy moth.

  18. LTR real-time PCR for HIV-1 DNA quantitation in blood cells for early diagnosis in infants born to seropositive mothers treated in HAART area (ANRS CO 01).

    Science.gov (United States)

    Avettand-Fènoël, Véronique; Chaix, Marie-Laure; Blanche, Stéphane; Burgard, Marianne; Floch, Corinne; Toure, Kadidia; Allemon, Marie-Christine; Warszawski, Josiane; Rouzioux, Christine

    2009-02-01

    HIV-1 diagnosis in babies born to seropositive mothers is one of the challenges of HIV epidemics in children. A simple, rapid protocol was developed for quantifying HIV-1 DNA in whole blood samples and was used in the ANRS French pediatric cohort in conditions of prevention of mother-to-child transmission. A quantitative HIV-1 DNA protocol (LTR real-time PCR) requiring small blood volumes was developed. First, analytical reproducibility was evaluated on 172 samples. Results obtained on blood cell pellets and Ficoll-Hypaque separated mononuclear cells were compared in 48 adult HIV-1 samples. Second, the protocol was applied to HIV-1 diagnosis in infants in parallel with plasma HIV-RNA quantitation. This prospective study was performed in children born between May 2005 and April 2007 included in the ANRS cohort. The assay showed good reproducibility. The 95% detection cut-off value was 6 copies/PCR, that is, 40 copies/10(6) leukocytes. HIV-DNA levels in whole blood were highly correlated with those obtained after Ficoll-Hypaque separation (r = 0.900, P mothers have received HAART.

  19. PROCESOS IDENTITARIOS ENTRE GITANOS: DESDE LA EXCLUSIÓN HASTA UNA CULTURA DE LIBERTAD/ IDENTITY PROCESSES AMONG THE GYPSY PEOPLE: FROM EXCLUSION TO A CULTURE OF FREEDOM / PROCESSOS IDENTITÁRIOS ENTRE CIGANOS: DA EXCLUSÃO A UMA CULTURA DE LIBERDADE

    Directory of Open Access Journals (Sweden)

    Fabiana Davel Canal

    2009-05-01

    Full Text Available Resumen:Este estudio tuvo por objetivo saber como hombres y mujeres gitanas construyen su identidad étnica a través de las relaciones establecidas entre estacomunidad y grupos no-gitanos. Para ello, participaron de la investigación 07 hombres y 10 mujeres gitanas. Se realizaron entrevistas individuales con un guión semi-estructurado y se hizo el análisis de los datos por medio del software ALCESTE y del análisis del contenido. Los resultados demostraron que la cultura gitana posee aspectos singulares, con dos pilares aparentemente fundamentales para su estructuración - relaciones parentales y relaciones de género. Al dinamizar esas dimensiones, encontramos otras características importantes, como creencias religiosas, respeto por los ancianos, fidelidad en los acuerdos realizados y control de la virginidad femenina hasta el matrimonio.AbstractThis study aimed to know how gypsy men and women produce their ethnic identity through the relationship they establish between their community and the non-gypsy world. For that, 07 gypsy men and 10 gypsy women participated in this research. Individual interviews have been carried out with semistructured script and the data analysis was done using the software ALCESTE and the Content Analysis. The results have demonstrated that the gypsyculture has singular aspects, with two apparently fundamental pillars for their structuring - parental relationship and gender subjects. Applying dynamics to those dimensions, we find other important themes in the organization of this ethnic group, like religious beliefs, respect to the elderly, fidelity to theagreements and control of the female virginity until marriage.

  20. El estado de salud del pueblo gitano en España: una revisión de la bibliografía The health status of the gypsy community in Spain: a review of the literature

    Directory of Open Access Journals (Sweden)

    F. Ferrer

    2003-01-01

    Full Text Available Introducción: El pueblo gitano es una minoría étnica establecida en España desde el siglo xv. En la actualidad, este colectivo presenta desigualdades sociales, económicas y sanitarias respecto al resto de la población. Es sabida la necesidad de realizar intervenciones de salud entre ellos. Objetivo: Determinar sobre qué aspectos de la salud en los gitanos españoles se ha interesado la bibliografía medicocientífica, y si se han estudiado sus diferencias étnicas y las desigualdades sociales en salud. Método: Realizamos una revisión de la bibliografía publicada en los últimos 20 años. Se ha llevado a cabo una búsqueda internacional en Medline, ampliándose a las publicaciones de difusión nacional o local mediante la base de datos IME-CSIC (Índice Médico Español e Internet. Resultados: Se han encontrado 96 publicaciones válidas sobre la salud entre los gitanos españoles, de las cuales 62 se han publicado en revistas españolas, y 47 en los últimos 6 años. Cincuenta y siete trabajos se han realizado en un hospital, 20 en una unidad de salud pública y 13 en centros de atención primaria. El 88% son estudios observacionales. Los temas más frecuentes han sido los estudios genéticos y de anomalías congénitas (30%, enfermedades transmisibles (21%, salud infantil (11% y sociología de la salud (11%. El 57% de los trabajos refiere alguna desigualdad social en salud. Discusión: El pueblo gitano español constituye un grupo de riesgo en salud debido a factores étnicos y genéticos, pero también estas personas presentan graves desigualdades sociales en salud en relación con la mortalidad y la morbilidad en enfermedades transmisibles, crónicas y ambientales, lo que generalmente se ha achacado a factores socioeconómicos y culturales, así como a un escaso acceso a los servicios sanitarios y a una poca utilización de éstos.Introduction: Gypsies form an ethnic minority settled in Spain in the 15th century. At present, this

  1. Effect of Two α-pinene Derivatives on Enzymes Activity of the Gypsy Moth%2种α-蒎烯衍生物对舞毒蛾体内酶活性的影响

    Institute of Scientific and Technical Information of China (English)

    张静; 马玲; 陈旭日; 马伟

    2015-01-01

    In order to provide the concept and the actual reference to effectively control the harm of the gypsy moth and practice the concrete prevention and control work, we studied the effect of two α-pinene derivatives involving 3-methoxy-4-hydroxyphenyl-α-pinene maleimide group acylhydrazone and (10z)-N-[5.7.7-trimethyl(4.1.0) heptyl-4-ethylenedia⁃mine-3-subunit] aniline on the 3rd instar larvae of gypsy moth by using feed mixed drug law and measured the ( CarE) , ( CAT) , ( SOD) and ( AChE) activity by using enzyme activity assay. Both agents have a certain role in virulence on the 3rd instar larvae of gypsy moth, the LC50 were 68.344 and 119.537 mg/kg at 48 h, and (10z)-N-[5.7.7-trimethyl(4.1.0) heptyl-4-ethylenediamine-3-subunit] aniline have an more significant effect. When the 3-methoxy-4-hydroxyphenyl-α-pi⁃nene maleimide group acylhydrazone was dealt with the 3rd instar larvae of gypsy moth on the one hand its effects were more obvious on the CarE and AChE activity with the largest inhibition rate of 70.97% and 71.23%, respectively, and it had a clear activating effect on the CAT and SOD activity that the maximum values were 1.62 and 1.42 times than those of the control, respectively. When the (10z)-N-[5.7.7-trimethyl(4.1.0) heptyl-4-ethylenediamine-3-subunit] aniline was dealt with the 3rd instar larvae of gypsy moth, its effects were more obvious on CAT, CarE and AChE activity with the largest inhibition rate of 67.4%, 31.43% and 26.04%, respectively, and it showed the inhibition first and activation later for SOD activity.%为了探明α-蒎烯的2种衍生物3-甲氧基-4-羟基苯基-α-蒎烯马来酰亚胺基酰腙和(10z)-N-[5.7.7-三甲基(4.1.0)庚-4-乙二胺-3-亚基]苯胺对舞毒蛾(Lymantria dispar)3龄幼虫的毒力作用,采用饲料混药法研究了2种衍生物不同剂量处理下,其体内CarE、CAT、SOD和AChE活性的变化规律。结果表明:2种衍生物对舞毒蛾3龄幼虫

  2. 舞毒蛾不同地理种群基于AFLP分子标记的遗传分析%AFLP Analysis of Different Geographic Populations of the Gypsy Moth, Lymantria dispar ( Lepidoptera: Lymantriidae)

    Institute of Scientific and Technical Information of China (English)

    钱路; 安榆林; 徐梅; 杨晓军; 朱宏斌

    2011-01-01

    舞毒蛾是一种食性很广、危害很大的世界性林木害虫,根据其地理分布和生活特性,现在被分为亚洲型和欧洲型2种.对来自俄罗斯远东地区、蒙古、日本、美国和中国5个地理种群,共26份舞毒蛾样品进行AFLP分子标记研究.成功建立并优化舞毒蛾AFLP分析体系,从16对引物组合中筛选出3对扩增条带多、多态检出率高的荧光标记引物组合,利用CEQ - 8000遗传分析仪进行毛细管电泳及数据分析,共检测到507个多态性位点.通过PAUP软件对AFLP数据进行UPGM和NJ树的聚类分析以及遗传距离分析,结果表明:5个地理种群舞毒蛾明显分成欧洲型(美国种群)和亚洲型,其中亚洲型又可分成俄罗斯、日本、中国及蒙古3个类群.美国种群间遗传变异比其他种群较大,中国种群与美国种群遗传距离最大,而与蒙古种群遗传分化最小.从分子水平上研究舞毒蛾不同种群的遗传分类情况,揭示利用AFLP分子标记技术可以区分舞毒蛾不同地理种群的基因型,为研究舞毒蛾的起源、入侵与扩散、遗传与变异以及检疫措施的制定等方面提供科学依据.%The gypsy moth,Lymantria dispar Linnaeus, is one of the most serious insect pests of palaearctic and nearctic forests. According to their geographical distribution and biology characteristics, they were divided into the Asian and European types of populations. We used amplified fragment length polymorphism (AFLP) to detect genetic diversities within and among the gypsy moth populations. Three fluorescent-labeled AFLP primer combinations were used on 26 L. Dispar samples collected from different locations of Russia, Mongolia, Japan, United States of America and China, detecting a total of 507 polymorphic fragments. Genetic similarities based on these data were calculated and cluster analysis was performed to graphically display groupings between populations. L. Dispar samples from these areas were grouped

  3. 析《少女与吉卜赛人》中的劳伦斯的精神生态%On Spiritual Ecology Thought of Lawrence in the Girl and the Gypsy

    Institute of Scientific and Technical Information of China (English)

    李静

    2013-01-01

    With excessively concerning about the wealth and status ,the spiritual pollution within human race becomes the most serious pollution in our world .A lot of social problems ,such as ,belief losing ,moral decay , criminal crisis , terrorist crisis , caused by spiritual pollution , are a big threat to our survival .This thesis attempts to discuss the spiritual ecology of Lawrence by analyzing characters'spiritual crisis in the girl and the gypsy and make us to think about our survival future and fulfill the breakout of the spiritual pollution .%在物欲横飞、金钱至上的社会,“精神污染”已经成为最可怕的污染,而精神危机所引发的信仰崩溃、道德沦丧、违法犯罪、恐怖主义等诸多社会问题已经严重影响到人们的生存。分析《少女与吉卜赛》中人物所存在的精神危机问题,探索劳伦斯精神生态观的实质,并思考人类未来,探讨如何实现精神困境的突围。

  4. Tre 酶真核表达载体构建及其特异性识别 loxLTR序列的功能鉴定%Construction of Tre enzyme eukaryotic expression vector and identification of its function in loxLTR sequence-specific recognition

    Institute of Scientific and Technical Information of China (English)

    刘清泉; 于卓然; 孙永涛

    2014-01-01

    Objective Clearing HIV provirus is the key to cure AIDS .The study was to construct the Tre enzyme eukaryotic expression vector and identify its function in specific recognition of loxLTR sequence in HIV provirus . Methods Tre gene was in-serted into eukaryotic expression vector pcDNA 3.1 gene recombination manipulation by genetic recombination techniques including gene synthesis , PCR, restriction enzyme digestion and ligation .EGFPpA-LoxLTR sequence was inserted into pmCherry-N1 vector and was tested by restriction enzyme digestion , PCR and sequencing .Constructed vectors were electroporated into HeLa cells , then using fluorescence microscopy to observe fluorescence intensity changes . Results PCR, restriction enzyme digestion , electrophoresis and sequencing confirmed that Tre enzyme eukaryotic expression vector had been constructed successfully , and it could specifically recog-nize and cut loxLTR sequence after being transfected into Hela cells . Conclusion Constructed Tre enzyme eukaryotic expression vector can be expressed in Hela cells and specifically recognize loxLTR sequence , which has prepared the experimental ground for fur-ther studies of clearing HIV provirus .%目的:清除人类免疫缺陷病毒( human immunodeficiency virus , HIV)前病毒是治愈艾滋病的关键。构建Tre酶真核表达载体,鉴定其特异性识别HIV前病毒中所含有的loxLTR序列功能。方法经基因合成、PCR、酶切、连接等基因重组技术将Tre基因插入pcDNA3.1真核表达载体中,将EGFPpA-LoxLTR序列插入pmCherry-N1载体中,并经酶切、PCR、测序鉴定;用电穿孔法将构建的载体转染到HeLa细胞,用荧光显微镜观察荧光强弱及变化。结果经PCR、酶切、电泳、测序分析鉴定,Tre酶真核表达载体构建正确,转染HeLa细胞后,能特异性识别并剪切loxLTR序列。结论构建的Tre酶真核表达载体可在HeLa细胞中表达,并特异性识别loxLTR序列。

  5. Establishment of Optimum Reaction System of Carboxylesterase from Gypsy Moth (Lymantria dispar)%舞毒蛾羧酸酯酶最佳反应体系的确立1)

    Institute of Scientific and Technical Information of China (English)

    付莉; 胡春祥

    2015-01-01

    In order to study the optimum reaction system of carboxylesterase (CarE) from the gypsy moth (Lymantria dispar), we used orthogonal experiment to measure the effects of the concentrations of carboxylesterase and substrate , pH, reaction temperature and reaction time to the activity of CarE .Through analyzing the data from orthogonal experiment with range analy-sis and analysis of variance , the optimum reaction system of carboxylesterase was ultimately determined as 0.2 beetle· mL-1 of carboxylesterase concentration , 0.2 mmol· L-1 of substrate concentration , 7.5 of pH, 45℃of reaction temperature , and 10 min of reaction time .%为了确定舞毒蛾(Lymantrai dispar)羧酸酯酶(CarE)活性的最佳反应体系,运用正交试验测定了反应体系中酶浓度、底物浓度、pH值、反应温度和反应时间5个因素对CarE活性的影响。极差分析和方差分析显示,舞毒蛾CarE的最优反应体系为酶浓度0.2头· mL-1,底物浓度0.2 mmol· L-1,pH=7.5,反应温度45℃,反应时间10 min。

  6. THE LETHAL EFFECT AND SUBLETHAL EFFECT OF DIFFERENT GEOGRAPHIC STRAINS LDMNPV FOR THE 2nd INSTAR ASIAN GYPSY MOTH LARVAETH%不同地理品系LdMNPV对取食青杨的亚洲型舞毒蛾幼虫的致死与亚致死作用

    Institute of Scientific and Technical Information of China (English)

    王树娟; 立清; 单艳敏; 李海平; 冯淑军

    2011-01-01

    In order to use of the LdMNPV to Asian gypsy moth larvae to the biological control better, the study use the diet to poison method to determine the lethal effect and sublethal effect of different geographic strains LdMNPV, which to the 2nd instar Asian gypsy moth larvae feeding poplar (Popvlus cathayana). The results showed: The LC5Os of LdMNPV - D, LdMNPV-H, LdMNPV-Jwere 33, 39 and 1076 Obs/Ux and the LT^s of the three isolates were 10. 5, 13.5 and 8.9d. The sublethal dose of three geography LdMNPV strains have a certain influence to the developmental time, the sex ratio and the pupal weight of Asian gypsy moth larvae. The sublethal dose of LdMNPV - H and LdMNPV - J prolonged the developmental time of Asian gypsy moth, and the total insects stage had significant difference with the contrast; LdMNPV - D also prolonged the developmental time of Asian gypsy moth but the total insects stage had no significant difference with the contrast. The sublethal dose of three geography LdMNPV strains reduced the sex ratio of the females than males. LdMNPV - D strains had significant difference with the pupal weight of female and male ones, but LdMNPV - J strains have highly significant difference with the pupal weight of the female ones. The sublethal dose of LdMNPV - H have no significant effects to the the pupal weight of the female and male ones.%为了更好的利用LdMNPV对亚洲型舞毒蛾幼虫进行生物防治,本文采用食料给毒法测定了不同地理品系LdMNPV对取食青杨的亚洲型舞毒蛾2龄幼虫的致死与亚致死作用.结果表明:LdMNPV -D、LdMNPV -H、LdMN-PV-J 3个地理品系的LC50分别为33、39、1076 0Bs/μL,LT50分别为10.5d、13.5d、8.9d;亚致死剂量的LdMNPV 3个地理品系对亚洲型舞毒蛾雌雄虫的发育历期、雌雄性比及蛹重均有一定影响,主要的表现为:亚致死剂量的LdMNPV-H和LdMNPV -J品系均延长了亚洲型舞毒蛾发育历期,且与对照相比总虫期达到显著水平;LdMNPV -D品

  7. Development of IRAP Markers Based on Genomic LTR Retrotransposon Sequences in Masson Pine (Pinus massoniana)%基于马尾松反转录转座子序列的IRAP分子标记开发及应用

    Institute of Scientific and Technical Information of China (English)

    崔博文; 范付华; 丁贵杰; 杨章旗; 文晓鹏

    2016-01-01

    [目的]为了丰富马尾松遗传信息,开发更多适用于马尾松的新型分子标记。[方法]依据马尾松Ty1-copia类型和Ty3-gypsy类型反转录转座子RT序列的保守区域设计引物,建立了马尾松IRAP-PCR技术体系并以12个基因型个体为材料进行验证。[结果]42条引物中筛选出多态性丰富、重复性好的29条进行PCR扩增,共获得227条谱带,其中多态性条带207个,多态性比例为91.19%,平均观测等位基因数(Na)为1.9119±0.2841,有效等位基因数(Ne)为1.4680±0.2882,Nei’s 基因多样性指数(H)为0.2911±0.1449,Shannon’s信息指数(I)为0.4472±0.1953;利用引物P-12、P-15或R-1,可以将栽培种与无性系两类区分开;P-2可作为核心引物,能将12份供试材料有效区分开来;采用IRAP标记构建了供试种质的DNA指纹图谱;供试种质的遗传相似系数为0.460.69,以相似系数为基础,进行UPGMA聚类分析,以0.57为阈值可将供试种质分为三类,其中无性系内不同材料间也存在较大的遗传变异。[结论]IRAP分子标记能有效地用于马尾松种质的鉴别与亲缘关系分析等相关研究。%[Objective]To develop new molecular markers suitable for Pinus massoniana.[Method]Based on the conservative region of RT (reverse transcriptase)sequences of Ty1-copia and Ty3-gypsy type retrotransposon,the IRAP-PCR system for P.massoniana was established and examined with 12 individuals.[Result]Of 42 IRAP prim-ers,29 gave stable and polymorphic amplification profiles,thus yielded 227 bands,among which 207 were polymor-phic,accounting for 91.19% of the total.The average Observed Number of Alleles,Effective Number of Alleles, Nei’s Genetic Diversity and Shannon Index of Diversity in the twelve P.massoniana gemplasms were 1.911 9 ± 0.284 1,1.468 0 ±0.288 2,0.291 1 ±0.144 9 and 0.447 2 ±0.195 3,respectively.The cultivated types and clones could be

  8. Detection of Extermination Effect of Ultraviolet Irradiation on Gypsy Moth Eggs by Fluorescence Probe Technique%紫外线照射灭卵效果的荧光探针技术检测

    Institute of Scientific and Technical Information of China (English)

    李景奎; 戚大伟

    2011-01-01

    以林木害虫舞毒蛾(Lymantria dispar L.)虫卵为试验材料,利用吖啶橙、罗丹明123、Ho33342和碘化丙啶4种荧光探针追踪标记虫卵细胞内部的不同细胞器,研究了紫外线照射对舞毒蛾虫卵的微现影响.研究表明:经过紫外线照射后,吖啶橙标记的虫卵细胞产生红色荧光;罗丹明123标记虫卵细胞荧光强度有所减弱;Ho33342和碘化丙啶标记的虫卵细胞产生大量粉红色荧光,并且,细胞形态发生了改变.紫外线照射导致虫卵细胞大量DNA链断裂,线粒体膜电位差下降,坏死细胞逐渐增多.荧光探针技术体现了物理灭虫的有效性.%An experiment was conducted to study the effect of ultraviolet irradiation on the microstructure of gypsy moth (Lymantria dispar L. ) eggs using fluorescence probes such as acridine orange, rhodanmine123, Ho33342 and Propidium iodide (PI) to trace and mark different organelles in egg cells. Results indicated that, after ultraviolet in'adiation, the egg cells marked with acridine orange gave off red fluorescence; the fluorescence intensity of egg cells marked with rhodamine123 decreased; egg cells marked with Ho33342 and PI gave off a lot of pink fluorescence, and the shape of cells changed. Because of the ultraviolet irradiation,much DNA of egg cells strands broke; electric potential of mitochondria membrane decreased; necrotic cells increased by degrecs. Fluorescence probe technique shows the validity of physical extermination of insects.

  9. Fumigation effects of two fumigates on different development stages of the gypsy moth%2种不同熏蒸剂对舞毒蛾不同虫态的杀灭效果

    Institute of Scientific and Technical Information of China (English)

    张瑞峰; 程瑜; 杨菲; 康芬芬; 魏亚东

    2013-01-01

    为判断溴甲烷和硫酰氟对舞毒蛾不同虫态的杀灭效果,在25℃下,分别在经过气密性检测的熏蒸桶内投入16、20、24、32 g/m3的溴甲烷和40、56、72、88 g/m3的硫酰氟,熏蒸处理舞毒蛾卵、幼虫、蛹和成虫4.5h.结果表明,经过4.5h熏蒸,杀灭舞毒蛾卵、1龄幼虫、蛹和成虫的溴甲烷浓度分别为32、20、24和16 g/m3,杀灭上述虫态硫酰氟浓度分别为88、56、72和40 g/m3.本文结果表明,舞毒蛾卵为最耐受溴甲烷和硫酰氟熏蒸的虫态,在目前口岸实际熏蒸处理中应充分考虑熏蒸剂对舞毒蛾卵的杀灭效果.%In order to determine the fumigation effects of methyl bromide (MB) and sulfuryl fluoride (SF) on different development stages of the gypsy moth Lymantria dispar L.,the killing effects were tested in the laboratory at 25 ℃ and 16,20,24 and 32 g/m3of MB,and 40,56,72 and 88 g/m3 of SF,respectively,for 4.5 h.The results showed that the adults,larvae,pupae and eggs could be completely killed after treated with 16,20,24 and 32 g/m3 of MB and 40,56,72 and 88 g/m3 of SF,respectively,at 25 ℃ for 4.5 h.These results showed that the egg was the most tolerant stage against MB and SF,which should be taken into consideration in port fumigation treatments.

  10. Random shRNA Library Screen for shRNAs Targeting HIV-1 LTR Related Host Factors with TK Suicide Gene%shRNA随机文库结合TK自杀基因筛选靶向HIV-1 LTR相关宿主因子

    Institute of Scientific and Technical Information of China (English)

    李建彬; 方祥; 童贻刚; 米志强; 安小平; 谭莉; 陈斌; 王晓娜; 范华昊; 张文慧; 张博

    2012-01-01

    构建shRNA随机文库与HIV-1 LTR启动胸苷激酶基因(TK基因)稳定表达的稳定细胞系HEK293/TK,将两者结合起来,筛选靶向HIV-1 LTR相关宿主因子.方法:通过化学合成含有19个随机脱氧核苷酸的发夹结构,将其退火补平后与合成的接头Linker连接进行PCR反应,将PCR产物酶切后置于慢病毒载体pLenti-U6启动子下游由此构建shRNA随机文库;利用重叠PCR将HIV-1 LTR片段和TK基因连接起来,连接产物经酶切后与pcDNA3.1载体连接;将连接正确的质粒转染HEK293细胞同时用G418加压筛选获得稳定细胞系HEK293/TK;将所获得的文库质粒包装成慢病毒后侵染所构建的HEK293/TK细胞系,通过加入药物GCV进行加压筛选获得存活细胞.结果:成功筛选到加药后存活下来的细胞,抽提细胞基因组,采用巢式PCR扩增目的干扰序列并用Western blot对干扰序列进行验证,鉴定获得一个克隆所表达的shRNA能对TK基因的表达起到抑制作用,通过测序分析获得其干扰序列,该序列很有可能针对HIV-1 LTR某宿主相关因子.结论:成功构建了一种筛选HIV-1 LTR相关宿主因子的方法,筛选所得序列可以定位到具体相关宿主因子,为靶向筛选抗HIV-1药物提供了重要手段.%To screen HIV-1 LTR related host factors by constructing random RNAi library based on the lentiviral vector and HIV-1 LTR reporter cell line in which TK suicide gene can express stably. Methods: Oligo deoxynucleotides were chemically synthesized which formed hairpin structure that contain 19 random bases and were then fused with a linker sequence. The joined product was amplified by PCR and the PCR product was cloned downstream of U6 promoter of a lentiviral vector pLenti-U6 to prepare random shRNA Library. HIV-1 LTR and HSV-TK gene were amplified by PCR and then joined by overlapping PCR. The joined product was cloned into pcDNA3. 1 expression vector. The recombinant plasmid obtained was transfected into HEK293

  11. In Vitro Spermatogenesis of Gypsy Moth Larvae.

    Science.gov (United States)

    Brown, Judy; Loeb, Marcia J.

    1994-01-01

    Students establish simple cell developmental cultures to observe the process of spermatogenesis, mitosis, and meiosis in living cells. Using the background information, hints for further exploration, and experimental procedures provided, teachers can easily modify this experiment to suit their students needs. (ZWH)

  12. Future Risk of Gypsy Moth Defoliation

    Data.gov (United States)

    U.S. Environmental Protection Agency — Data from the suitable habitat combined with forest density, and adjusted by prefered species basal area and the predicited geographic pattern of defoliation can be...

  13. 1.2%烟碱·苦参碱乳油防治落叶松舞毒蛾田间药效试验%Field Trials of Nocotine·Matrine 1.2% EC against Gypsy Moth

    Institute of Scientific and Technical Information of China (English)

    侯长江

    2013-01-01

    [目的]明确1.2%烟碱·苦参碱乳油对林业害虫落叶松舞毒蛾的田间防治效果及田间用量.[方法]采用随机区组排列试验小区,以邓肯氏新复极差分析试验结果.[结果]1.2%烟碱·苦参碱乳油对落叶松舞毒蛾田间用量在10~15 mg a.i./L时,1d的防效在71.15%~92.73%之间;处理后3d,10 mg a.i./L防效达到80%以上,15 mg a.i./L防效达到100%;7 d防效在84%~100%之间,15 mg a.i./L比氰戊菊酯66.7 mg a.i./L防效高,10、12 mg a.i./L与后者防效相当.[结论]1.2%烟碱·苦参碱乳油对林业害虫落叶松舞毒蛾具有优良的田间防治效果,使用质量浓度以10~12 mg a.i./L为宜.%[Aims] The paper aims to evaluate field control efficiency and to determine field application rate of nicotinic·matrine 1.2% EC against gypsy moth.[Methods] The field trial was carried out using the randomized block design and the significance of difference was performed by Duncan's multiple range test (DMRT).[Results] Nocotine·matrine 1.2% EC's control of 1 d after treatment were in 71.15-92.73% at the concentration of 10-15 mg a.i./L; on the 3 d after treatment,the control at 10 and 15 mg a.i./L reached more than 80 and 100%,respectively; on the 7 d after treatment,the controls of three concentrations were in 84-100%,the control at 15 mg a.i./L was higher than that of fenvalerate at 66.7 mg a.i./L high,the controls at 10 and 12 mg a.i./L were the same as the control of fenvalerate at 66.7 mg a.i./L.[Conclusions] Nocotine·matrine 1.2% EC shows good control efficiency against gypsy moth,and could be used to effectively control gypsy moth at the concentration of 12 mg a.i./L.The reasonable dosage ranges from 10-12 mg a.i./L.

  14. Isolation and Characterization of RNaseH-LTR Sequences of Ty1-copia Like Retrotransposons in Oriental Persimmon (Diospyros kaki Thunb. 'Luotian-tianshi')%罗田甜柿Ty1-copia类逆转座子RNaseH-LTR序列的分离和特性分析

    Institute of Scientific and Technical Information of China (English)

    杜晓云; 张青林; 罗正荣

    2008-01-01

    逆转座子序列信息的获得,对了解其在基因组中的行为及系统学研究有重要价值.本试验从罗田甜柿(Diospyros kaki Thunb.'Luotian-tianshi')基因组中分离出31个RNaseH-LTR(long terminal repeat,长末端重复)序列,并利用逆转座子间扩增多态性(inter-retrotransposon amplified polymorphism,IRAP)技术对部分序列相应的逆转座子家族在柿属植物中的转座活性及分布情况进行初步探讨.序列分析结果表明,至少有10个Ty1-copia类逆转座子家族得到扩增;其家族间普遍表现高度异质,碱基替换、插入或缺失突变,以及翻译成氨基酸后发生不同程度的终止密码子突变、氨基酸取代和移框突变等,是产生高异质性的原因;此外,其家族内部某些序列间的相似性极高,可能是寄主基因组与逆转座子间互惠关系的体现.应用部分逆转座子引物的IRAP分析结果表明,相应的逆转座子家族在柿属植物中普遍存在,其分布广泛,拷贝数高,转座活性强,具有进一步开发为多种逆转座子分子标记的潜力.

  15. The application of LTR retrotransposons as molecular markers in plants.

    Science.gov (United States)

    Schulman, Alan H; Flavell, Andrew J; Paux, Etienne; Ellis, T H Noel

    2012-01-01

    Retrotransposons are a major agent of genome evolution. Various molecular marker systems have been developed that exploit the ubiquitous nature of these genetic elements and their property of stable integration into dispersed chromosomal loci that are polymorphic within species. The key methods, SSAP, IRAP, REMAP, RBIP, and ISBP, all detect the sites at which the retrotransposon DNA, which is conserved between families of elements, is integrated into the genome. Marker systems exploiting these methods can be easily developed and inexpensively deployed in the absence of extensive genome sequence data. They offer access to the dynamic and polymorphic, nongenic portion of the genome and thereby complement methods, such as gene-derived SNPs, that target primarily the genic fraction.

  16. Presence of env-like sequences in Quercus suber retrotransposons.

    Science.gov (United States)

    Carvalho, M; Ribeiro, T; Viegas, W; Morais-Cecilio, L; Rocheta, M

    2010-01-01

    The main difference between LTR retrotransposons and retroviruses is the presence of the envelope (env) gene in the latter, downstream of the pol gene. The env gene is involved in their infectious capacity. Here we report the presence of env-like sequences in the genome of Quercus suber (cork oak), one of the most economically important Portuguese species. These gene sequences were isolated through DNA amplification between RNaseH conserved motifs and 3' LTR, based on the structure of copia retrotransposons. Phylogenetic analysis revealed that almost all the clones isolated are clustered with Cyclops-2, a Ty3-gypsy element identified in Pisum sativum, except one clustered with gypsy and copia retroelements found in different species. This suggests the existence of a potential ancestral sequence of the env gene, prior to the separation of Ty3-gypsy and Ty1-copia retrotransposons. Additionally, the isolated env-like sequences showed 26-39% of homology with env-like sequences characterized in viruses. The origin of env-like sequences in retrotransposons from host plant taxa is discussed.

  17. Cloning and Analysis of Reverse Trancriptase of Ty3-gypsy-like Retrotransposons in Tree Peony (Paeonia)%牡丹Ty3-gypsy类反转录转座子反转录酶序列的克隆及分析

    Institute of Scientific and Technical Information of China (English)

    侯小改; 郭大龙; 黄燕梅; 张曦

    2013-01-01

    根据Ty3-gypsy反转录转座子反转录酶的保守序列设计简并引物,从中原牡丹(Paeonia suffruticosa Andrews)品种‘洛阳红’和野生种卵叶牡丹(Paeonia qiui Y.L.Pei et D.Y Hong)中扩增出430 bp左右的目标片段.目的条带经回收、克隆、测序及相关生物信息学软件进行序列分析后,获得了13条来自牡丹的Ty3-gypsy反转录转座子反转录酶序列.这些核苷酸序列具有较高的异质性,主要表现为缺失突变,序列长度变化范围为412 ~446 bp,同源性范围为71.5% ~ 94.8%.翻译成氨基酸后,有12条序列出现1~9个不同程度的终止密码子突变,3条序列出现移框突变.其核苷酸序列经过系统聚类后可分为6个家族.将其氨基酸序列与已登录的不同物种Ty3-gypsy反转录转座子反转录酶的氨基酸序列进行聚类分析,结果表明与其他植物具有较高的同源性,表明它们间可能存在着Ty3-gypsy反转录转座子的横向传递.%Using degenerate oligoncleotide primers corresponding to conserved domains of the Ty3-gypsy-like retrotransposon reverse transcriptase, a fragment of 430 bp was amplified by PCR from the genomic DNA of tree peony (Paeonia suffruticosa Andrews 'Luoyang Hong') and Paeonia qiui. The amplicons were recovered and cloned into pMD-18T vector after purification, positive clones were selected and identified by colony PCR, then sequenced and analyzed. Thirteen different sequences of reverse transcriptase from tree peony 'Luoyang Hong' and Paeonia qiui were obtained and six clusters were identified with high heterogeneity through phylogenic analysis after alignment analyses of their nucleotide sequences. These sequences showed high heterogeneity, mainly characterized by deletion mutations. The length of the nucleotide sequences varied from 412 to 446 bp, and homology ranged from 71.5% to 94.8%. When translated into amino acids, twelve sequences presented stop codon mutation, and three sequences presented

  18. INTERETHNIC CONTACT IN THE CONTEXT TO GYPSY MINORITY IN PREADOLESCENCE

    Directory of Open Access Journals (Sweden)

    Patricia Sonsoles Sánchez-Muros Lozano

    2016-07-01

    Full Text Available As part of an ethnographic study in public primary schools, in environments where majority and Roma minority have lived together for centuries, is explored in everyday discourse, the key factors of the social construction of the category, as well as early attitudes in the process of interethnic interaction in the classroom. The analysis of multiple data (discourse, proxemics classroom and sociometric networks in a simple of 40 non-Roma students between 11-14 years old, in municipalities with high concentrations of Roma population, shows significant qualitative contrasts in ethnic prejudice. Categorizations, attitudes and processes of interethnic inclusion or exclusion are arbitrate by social factors that facilitate or reduced the development of ethnic prejudice in this critical learning period.

  19. Gypsies, Wars and Other Instances of the Wild

    NARCIS (Netherlands)

    Port, van de Mattijs

    1998-01-01

    What does civilization mean to the inhabitants of a Serbian town after yet another bloody war on the Balkan Peninsula? How was it possible that people who had been friends and neighbors for so long ended up killing each other? And how do they deal with this barbarity in the post-war period?The figur

  20. Vagrant Gypsy%流浪的吉卜赛

    Institute of Scientific and Technical Information of China (English)

    衣露申

    2010-01-01

    @@ 走在寂静的街 影子渐渐的被拉长 身后留下一串希望 漫漫长路何为终点 美好的爱情像天堂是我们永远也到不了的地方 静静的伤心 因为我从来都是一个人流浪

  1. Terminal-repeat retrotransposons with GAG domain in plant genomes: a new testimony on the complex world of transposable elements.

    Science.gov (United States)

    Chaparro, Cristian; Gayraud, Thomas; de Souza, Rogerio Fernandes; Domingues, Douglas Silva; Akaffou, Sélastique; Laforga Vanzela, Andre Luis; Kochko, Alexandre de; Rigoreau, Michel; Crouzillat, Dominique; Hamon, Serge; Hamon, Perla; Guyot, Romain

    2015-01-07

    A novel structure of nonautonomous long terminal repeat (LTR) retrotransposons called terminal repeat with GAG domain (TR-GAG) has been described in plants, both in monocotyledonous, dicotyledonous and basal angiosperm genomes. TR-GAGs are relatively short elements in length (element into the virus-like particle. GAG precursors show similarities with both Copia and Gypsy GAG proteins, suggesting evolutionary relationships of TR-GAG elements with both families. Despite the lack of the enzymatic machinery required for their mobility, strong evidences suggest that TR-GAGs are still active. TR-GAGs represent ubiquitous nonautonomous structures that could be involved in the molecular diversities of plant genomes.

  2. Terminal-Repeat Retrotransposons with GAG Domain in Plant Genomes: A New Testimony on the Complex World of Transposable Elements

    Science.gov (United States)

    Chaparro, Cristian; Gayraud, Thomas; de Souza, Rogerio Fernandes; Domingues, Douglas Silva; Akaffou, Sélastique; Laforga Vanzela, Andre Luis; de Kochko, Alexandre; Rigoreau, Michel; Crouzillat, Dominique; Hamon, Serge; Hamon, Perla; Guyot, Romain

    2015-01-01

    A novel structure of nonautonomous long terminal repeat (LTR) retrotransposons called terminal repeat with GAG domain (TR-GAG) has been described in plants, both in monocotyledonous, dicotyledonous and basal angiosperm genomes. TR-GAGs are relatively short elements in length (<4 kb) showing the typical features of LTR-retrotransposons. However, they carry only one open reading frame coding for the GAG precursor protein involved for instance in transposition, the assembly, and the packaging of the element into the virus-like particle. GAG precursors show similarities with both Copia and Gypsy GAG proteins, suggesting evolutionary relationships of TR-GAG elements with both families. Despite the lack of the enzymatic machinery required for their mobility, strong evidences suggest that TR-GAGs are still active. TR-GAGs represent ubiquitous nonautonomous structures that could be involved in the molecular diversities of plant genomes. PMID:25573958

  3. Differential regulation of genes by retrotransposons in rice promoters.

    Science.gov (United States)

    Dhadi, Surendar Reddy; Xu, Zijun; Shaik, Rafi; Driscoll, Kyle; Ramakrishna, Wusirika

    2015-04-01

    Rice genome harbors genes and promoters with retrotransposon insertions. There is very little information about their function. The effect of retrotransposon insertions in four rice promoter regions on gene regulation, was investigated using promoter-reporter gene constructs with and without retrotransposons. Differences in expression levels of gus and egfp reporter genes in forward orientation and rfp in reverse orientation were evaluated in rice plants with transient expression employing quantitative RT-PCR analysis, histochemical GUS staining, and eGFP and RFP fluorescent microscopy. The presence of SINE in the promoter 1 (P1) resulted in higher expression levels of the reporter genes, whereas the presence of LINE in P2 or gypsy LTR retrotransposon in P3 reduced expression of the reporter genes. Furthermore, the SINE in P1 acts as an enhancer in contrast with the LINE in P2 and the gypsy LTR retrotransposon in P3 which act as silencers. CTAA and CGG motifs in these retrotransposons are the likely candidates for the downregulation compared to TCTT motif (SINE) which is a candidate for the upregulation of gene expression. The effect of retrotransposons on gene regulation correlated with the earlier investigation of conservation patterns of these four retrotransposon insertions in several rice accessions implying their evolutionary significance.

  4. Large-scale transcriptome analysis of retroelements in the migratory locust, Locusta migratoria.

    Directory of Open Access Journals (Sweden)

    Feng Jiang

    Full Text Available BACKGROUND: Retroelements can successfully colonize eukaryotic genome through RNA-mediated transposition, and are considered to be some of the major mediators of genome size. The migratory locust Locusta migratoria is an insect with a large genome size, and its genome is probably subject to the proliferation of retroelements. An analysis of deep-sequencing transcriptome data will elucidate the structure, diversity and expression characteristics of retroelements. RESULTS: We performed a de novo assembly from deep sequencing RNA-seq data and identified 105 retroelements in the locust transcriptome. Phylogenetic analysis of reverse transcriptase sequences revealed 1 copia, 1 BEL, 8 gypsy and 23 non-long terminal repeat (LTR retroelements in the locust transcriptome. A novel approach was developed to identify full-length LTR retroelements. A total of 5 full-length LTR retroelements and 2 full-length non-LTR retroelements that contained complete structures for retrotransposition were identified. Structural analysis indicated that all these retroelements may have been activated or deprived of retrotransposition activities very recently. Expression profiling analysis revealed that the retroelements exhibited a unique expression pattern at the egg stage and showed differential expression profiles between the solitarious and gregarious phases at the fifth instar and adult stage. CONCLUSION: We hereby present the first de novo transcriptome analysis of retroelements in a species whose genome is not available. This work contributes to a comprehensive understanding of the landscape of retroelements in the locust transcriptome. More importantly, the results reveal that non-LTR retroelements are abundant and diverse in the locust transcriptome.

  5. Retrotranspositions in orthologous regions of closely related grass species

    Directory of Open Access Journals (Sweden)

    Swigoňová Zuzana

    2006-08-01

    Full Text Available Abstract Background Retrotransposons are commonly occurring eukaryotic transposable elements (TEs. Among these, long terminal repeat (LTR retrotransposons are the most abundant TEs and can comprise 50–90% of the genome in higher plants. By comparing the orthologous chromosomal regions of closely related species, the effects of TEs on the evolution of plant genomes can be studied in detail. Results Here, we compared the composition and organization of TEs within five orthologous chromosomal regions among three grass species: maize, sorghum, and rice. We identified a total of 132 full or fragmented LTR retrotransposons in these regions. As a percentage of the total cumulative sequence in each species, LTR retrotransposons occupy 45.1% of the maize, 21.1% of the rice, and 3.7% of the sorghum regions. The most common elements in the maize retrotransposon-rich regions are the copia-like retrotransposons with 39% and the gypsy-like retrotransposons with 37%. Using the contiguous sequence of the orthologous regions, we detected 108 retrotransposons with intact target duplication sites and both LTR termini. Here, we show that 74% of these elements inserted into their host genome less than 1 million years ago and that many retroelements expanded in size by the insertion of other sequences. These inserts were predominantly other retroelements, however, several of them were also fragmented genes. Unforeseen was the finding of intact genes embedded within LTR retrotransposons. Conclusion Although the abundance of retroelements between maize and rice is consistent with their different genome sizes of 2,364 and 389 Mb respectively, the content of retrotransposons in sorghum (790 Mb is surprisingly low. In all three species, retrotransposition is a very recent activity relative to their speciation. While it was known that genes re-insert into non-orthologous positions of plant genomes, they appear to re-insert also within retrotransposons, potentially

  6. Analysis of transposable elements in the genome of Asparagus officinalis from high coverage sequence data.

    Science.gov (United States)

    Li, Shu-Fen; Gao, Wu-Jun; Zhao, Xin-Peng; Dong, Tian-Yu; Deng, Chuan-Liang; Lu, Long-Dou

    2014-01-01

    Asparagus officinalis is an economically and nutritionally important vegetable crop that is widely cultivated and is used as a model dioecious species to study plant sex determination and sex chromosome evolution. To improve our understanding of its genome composition, especially with respect to transposable elements (TEs), which make up the majority of the genome, we performed Illumina HiSeq2000 sequencing of both male and female asparagus genomes followed by bioinformatics analysis. We generated 17 Gb of sequence (12×coverage) and assembled them into 163,406 scaffolds with a total cumulated length of 400 Mbp, which represent about 30% of asparagus genome. Overall, TEs masked about 53% of the A. officinalis assembly. Majority of the identified TEs belonged to LTR retrotransposons, which constitute about 28% of genomic DNA, with Ty1/copia elements being more diverse and accumulated to higher copy numbers than Ty3/gypsy. Compared with LTR retrotransposons, non-LTR retrotransposons and DNA transposons were relatively rare. In addition, comparison of the abundance of the TE groups between male and female genomes showed that the overall TE composition was highly similar, with only slight differences in the abundance of several TE groups, which is consistent with the relatively recent origin of asparagus sex chromosomes. This study greatly improves our knowledge of the repetitive sequence construction of asparagus, which facilitates the identification of TEs responsible for the early evolution of plant sex chromosomes and is helpful for further studies on this dioecious plant.

  7. LQG/LTR Design of a Robust Flight Controller for the STOL F-15.

    Science.gov (United States)

    1985-12-01

    34truth modelo equated to the design model. While this controller shows an improvement In settling time, both position and rate limits for the canard...8. D’Azzo, John J., and Constantine H. Houpis. Lineal - Control S/stem.3 Analysis and Desion (3euond Elitlcri). New York: McGaw-Hill Book Company

  8. A LTR copia retrotransposon and Mutator transposons interrupt Pgip genes in cultivated and wild wheats.

    Science.gov (United States)

    Di Giovanni, Michela; Cenci, Alberto; Janni, Michela; D'Ovidio, Renato

    2008-04-01

    Polygalacturonase-inhibiting proteins (PGIPs) are leucine-rich repeat (LRR) proteins involved in plant defence. Wheat pgip genes have been isolated from the B (Tapgip1) and D (Tapgip2) genomes, and now we report the identification of pgip genes from the A genomes of wild and cultivated wheats. By Southern blots and sequence analysis of BAC clones we demonstrated that wheat contains a single copy pgip gene per genome and the one from the A genome, pgip3, is inactivated by the insertion of a long terminal repeat copia retrotranspon within the fourth LRR. We demonstrated also that this retrotransposon insertion is present in Triticum urartu and all the polyploidy wheats assayed, but is absent in T. monococcum (Tmpgip3), suggesting that this insertion took place after the divergence between T. monococcum and T. urartu, but before the formation of the polyploid wheats. We identified also two independent insertion events of new Class II transposable elements, Vacuna, belonging to the Mutator superfamily, that interrupted the Tdipgip1 gene of T. turgidum ssp. dicoccoides. The occurrence of these transposons within the coding region of Tdipgip1 facilitated the mapping of the Pgip locus in the pericentric region of the short arm of chromosome group 7. We speculate that the inactivation of pgip genes are tolerated because of redundancy of PGIP activities in the wheat genome.

  9. State-space solutions to the h_inf/ltr design problem

    DEFF Research Database (Denmark)

    Niemann, Hans Henrik

    1993-01-01

    phase case, though, the order of the controllers can be reduced to n in all cases. The control problems corresponding to the various controller types are given as four different singular state-space problems, and the solutions are given in terms of the relevant equations and inequalities...

  10. LQG/LTR Optimal Attitude Control of Small Flexible Spacecraft Using Free-Free Boundary Conditions

    Science.gov (United States)

    2006-08-03

    engine vibrating . A high recovery force from an SMA can be compared to the stretching or com- pression of a spring, such as one found in a mattress or a...Singer. “ Vibration Reduction Using Multi-Hump Extra-Insensitive Input Shapers.” 1995 American Control Confer- ence. 3830–3834. Evanston, IL: American...13 1.12 AEC-Able Engineering’s CoilAble Boom [49] . . . . . . . . . . . . . . . 14 2.1 Rotational- Vibrational Constraint

  11. Derepression of the plant Chromovirus LORE1 induces germline transposition in regenerated plants.

    Directory of Open Access Journals (Sweden)

    Eigo Fukai

    2010-03-01

    Full Text Available Transposable elements represent a large proportion of the eukaryotic genomes. Long Terminal Repeat (LTR retrotransposons are very abundant and constitute the predominant family of transposable elements in plants. Recent studies have identified chromoviruses to be a widely distributed lineage of Gypsy elements. These elements contain chromodomains in their integrases, which suggests a preference for insertion into heterochromatin. In turn, this preference might have contributed to the patterning of heterochromatin observed in host genomes. Despite their potential importance for our understanding of plant genome dynamics and evolution, the regulatory mechanisms governing the behavior of chromoviruses and their activities remain largely uncharacterized. Here, we report a detailed analysis of the spatio-temporal activity of a plant chromovirus in the endogenous host. We examined LORE1a, a member of the endogenous chromovirus LORE1 family from the model legume Lotus japonicus. We found that this chromovirus is stochastically de-repressed in plant populations regenerated from de-differentiated cells and that LORE1a transposes in the male germline. Bisulfite sequencing of the 5' LTR and its surrounding region suggests that tissue culture induces a loss of epigenetic silencing of LORE1a. Since LTR promoter activity is pollen specific, as shown by the analysis of transgenic plants containing an LTR::GUS fusion, we conclude that male germline-specific LORE1a transposition in pollen grains is controlled transcriptionally by its own cis-elements. New insertion sites of LORE1a copies were frequently found in genic regions and show no strong insertional preferences. These distinctive novel features of LORE1 indicate that this chromovirus has considerable potential for generating genetic and epigenetic diversity in the host plant population. Our results also define conditions for the use of LORE1a as a genetic tool.

  12. Analysis of transposons and repeat composition of the sunflower (Helianthus annuus L.) genome.

    Science.gov (United States)

    Cavallini, Andrea; Natali, Lucia; Zuccolo, Andrea; Giordani, Tommaso; Jurman, Irena; Ferrillo, Veronica; Vitacolonna, Nicola; Sarri, Vania; Cattonaro, Federica; Ceccarelli, Marilena; Cionini, Pier Giorgio; Morgante, Michele

    2010-02-01

    A sample-sequencing strategy combined with slot-blot hybridization and FISH was used to study the composition of the repetitive component of the sunflower genome. One thousand six hundred thirty-eight sequences for a total of 954,517 bp were analyzed. The fraction of sequences that can be classified as repetitive using computational and hybridization approaches amounts to 62% in total. Almost two thirds remain as yet uncharacterized in nature. Of those characterized, most belong to the gypsy superfamily of LTR-retrotransposons. Unlike in other species, where single families can account for large fractions of the genome, it appears that no transposon family has been amplified to very high levels in sunflower. All other known classes of transposable elements were also found. One family of unknown nature (contig 61) was the most repeated in the sunflower genome. The evolution of the repetitive component in the Helianthus genus and in other Asteraceae was studied by comparative analysis of the hybridization of total genomic DNAs from these species to the sunflower small-insert library and compared to gene-based phylogeny. Very little similarity is observed between Helianthus species and two related Asteraceae species outside of the genus. Most repetitive elements are similar in annual and perennial Helianthus species indicating that sequence amplification largely predates such divergence. Gypsy-like elements are more represented in the annuals than in the perennials, while copia-like elements are similarly represented, attesting a different amplification history of the two superfamilies of LTR-retrotransposons in the Helianthus genus.

  13. Digital margins: Social and digital exclusion of Gypsy-Travelers in the Netherlands

    NARCIS (Netherlands)

    Salemink, Koen

    2016-01-01

    Research on digital inclusion increasingly focuses on vulnerable groups, with the prevailing idea that social exclusion leads to digital exclusion. The role of the socio-spatial context is often faded into the background due to user-centric (individual) approaches. This article explores how a vulner

  14. Individualism-collectivism as predictors of prejudice toward Gypsies in Spain

    Directory of Open Access Journals (Sweden)

    Valdiney V. Gouveia

    2011-01-01

    Full Text Available Las asociaciones entre el individualismo-colectivismo y el prejuicio han producido resultados mixtos. Triandis (1995 sostiene que el prejuicio y la discriminación son más probables entre los colectivistas que individualistas, y que el atributo vertical (poniendo énfasis en la jerarquía tanto del individualismo como del colectivismo está más relacionado con actitudes negativas hacia los exogrupos. El presente estudio analiza el poder predictivo del individualismo y colectivismo para explicar medidas de prejuicio hacia una minoría grupal (gitanos en la población general de una cultura colectivista (España. Los resultados indican que los individualistas son más probables expresar prejuicio hacia los gitanos, mientras que los colectivistas favorecen más pensamientos, sentimientos y comportamientos positivos hacia este grupo. Los resultados también indican que el atributo horizontal (poniendo énfasis en la igualdad fue más importante al evaluar las relaciones del individualismo-colectivismo con el prejuicio en España. En esta cultura colectivista, el individualismo es más probable instigar el perjuicio, mientras que el colectivismo es más probable inhibirlo. Estos hallazgos apoyan otras investigaciones que muestran que los individualistas son más probables presentar prejuicio y discriminar, pero contradice las expectativas de Triandis de que los colectivistas verticales son más propensos a expresar actitudes negativas hacia exogrupos (seguido por los individualistas verticales, colectivistas horizontales e individualistas horizontales. Se discuten las explicaciones teóricas para estos hallazgos.

  15. On an epistemological choice: Gypsy Studies as a Slovenian nation-building discipline

    Directory of Open Access Journals (Sweden)

    Ana Podvršič

    2013-08-01

    Full Text Available Analysing Slovenian sociological production of knowledge about the Romani people, the article problematises the question of epistemological choice in studying social reality. These studies can serve as a case study in examining the complex yet systematised relationship between the changes in social reality and the academic discourse. As an object of inquiry, the Romani people have been introduced in the Slovenian academic discourse after Slovenia’s independence and particularly during the period of the accession to the European Union, when Romani people have been granted the status of an ethnic minority. The prevailing studies, which are primarily based in cultural studies, call, together with minority law, for an improvement of the situation of Romani communities, starting with ending discrimination. However, the discourse on the Romani people as an underprivileged minority cannot reflect on the presuppositions of its own practice. Hence, by identifying the normative discourse of the nation-state with the analytical discourse, and by approaching ethnic groups as givens, it works against the very position that it tries to defend; by unknowingly supporting neoliberal policies, it contributes to the reproduction of the existent relations of inequality.

  16. Individualism-collectivism as predictors of prejudice toward Gypsies in Spain

    OpenAIRE

    Valdiney V. Gouveia; Taciano L. Milfont; María del Carmen Martínez; Consuelo Paterna

    2011-01-01

    Las asociaciones entre el individualismo-colectivismo y el prejuicio han producido resultados mixtos. Triandis (1995) sostiene que el prejuicio y la discriminación son más probables entre los colectivistas que individualistas, y que el atributo vertical (poniendo énfasis en la jerarquía) tanto del individualismo como del colectivismo está más relacionado con actitudes negativas hacia los exogrupos. El presente estudio analiza el poder predictivo del individualismo y colectivismo para explicar...

  17. 7 CFR 319.77-3 - Gypsy moth infested areas in Canada.

    Science.gov (United States)

    2010-01-01

    .... Andrews, St. Croix, St. David, St. George, St. James, St. Patrick, and St. Stephen. (2) Kings County. That... District that includes the City of Sudbury and the townships of Baldwin, Dryden, Dunlop, Graham,...

  18. Environmental Assessment for Aerial Application of Pesticide for Gypsy Moth Control, Andrews Air Force Base, Maryland

    Science.gov (United States)

    2008-04-01

    a cessation of feeding, and death by starvation. Btk is persistent on foliage for about 7-10 days. Btk formulations are available as flowable ...applicator’s certification. COMPOSITION Active Ingredient: (% by weight) diflubenzuron N-[[(4-Chlorophenyl)amino]carbonyl]-2,6-difluorobenzamide

  19. The forced dislocation of gypsy people from the town of Bayramic, Canakkale in 1970

    NARCIS (Netherlands)

    Özateşler, Gül

    2012-01-01

    This oral project draws upon Gypsies’ and non-Gypsies’ narratives of forced dislocation from the town of Bayramic in 1970 with a focus on the recruitment of categories of Gypsyness and Turkishness. It reveals different perspectives and memory constructions along with the positions taken in the attac

  20. Population genetics of 15 AmpflSTR Identifiler loci in Macedonians and Macedonian Romani (Gypsy).

    Science.gov (United States)

    Havas, Dubravka; Jeran, Nina; Efremovska, Ljudmila; Dordević, Dobrivoje; Rudan, Pavao

    2007-12-20

    Allele frequencies of 15 AmpFlSTR Identifiler STR loci (D8S1179, D21S11, D7S820, CSF1PO, D3S1358, TH01, D13S317, D16S539, D2S1338, D19S433, vWA, TPOX, D18S51, D5S818 and FGA) were analysed in a sample of 100 unrelated autochthonous Macedonian and 102 Macedonian Romani individuals, representing different ethnic groups residing within the same country of Former Yugoslav Republic of Macedonia. The interpopulation comparisons between Macedonians and Macedonian Romani with four south eastern European populations, Kosovo Albanians, Serbians from Vojvodina Province, western Romanians and northern Greeks were performed as well as comparison between Macedonian Romani and Assam population from Asia (India). Reported data point that Macedonian Romani, as an example of an endogamous population of Asian (Indian) origin, show significant allelic differences when compared to neighbouring south eastern European populations.

  1. Neurophysiological and behavioral responses of gypsy moth larvae to insect repellents

    Science.gov (United States)

    The interactions between insect repellents and the olfactory system have been widely studied, however relatively little is known about the effects of repellents on the gustatory system of insects. In this study, we show that the gustatory receptor neuron (GRN) located in the medial styloconic sensi...

  2. Neurophysiological and Behavioral Responses of Gypsy Moth Larvae to Insect Repellents: DEET, IR3535, and Picaridin

    Science.gov (United States)

    2014-06-23

    fever mosquito Aedes aegypti [7] have a gustatory receptor neuron (GRN) housed within the labellar sensilla sensitive to DEET (D. melanogaster) and two...solutions were given in a randomized order to prevent bias, except for dose response experiments in which solutions were given in order of increasing...placed in water and were removed just prior to testing. This was to prevent dehydration of the leaves. Six leaf disks were arranged equidistant

  3. 78 FR 24665 - Gypsy Moth Generally Infested Areas; Additions in Wisconsin

    Science.gov (United States)

    2013-04-26

    ... (Linnaeus), is a destructive pest of forest, shade, and commercial trees such as nursery stock and Christmas... defoliation of susceptible forest and shade trees. Under these circumstances, the Administrator has determined... this pest. Fifty-eight entities will be directly affected by this expansion of the quarantine area:...

  4. Survey of transposable elements in sugarcane expressed sequence tags (ESTs

    Directory of Open Access Journals (Sweden)

    Rossi Magdalena

    2001-01-01

    Full Text Available The sugarcane expressed sequence tag (SUCEST project has produced a large number of cDNA sequences from several plant tissues submitted or not to different conditions of stress. In this paper we report the result of a search for transposable elements (TEs revealing a surprising amount of expressed TEs homologues. Of the 260,781 sequences grouped in 81,223 fragment assembly program (Phrap clusters, a total of 276 clones showed homology to previously reported TEs using a stringent cut-off value of e-50 or better. Homologous clones to Copia/Ty1 and Gypsy/Ty3 groups of long terminal repeat (LTR retrotransposons were found but no non-LTR retroelements were identified. All major transposon families were represented in sugarcane including Activator (Ac, Mutator (MuDR, Suppressor-mutator (En/Spm and Mariner. In order to compare the TE diversity in grasses genomes, we carried out a search for TEs described in sugarcane related species O.sativa, Z. mays and S. bicolor. We also present preliminary results showing the potential use of TEs insertion pattern polymorphism as molecular markers for cultivar identification.

  5. Evolutionary reshuffling in the Errantivirus lineage Elbe within the Beta vulgaris genome.

    Science.gov (United States)

    Wollrab, Cora; Heitkam, Tony; Holtgräwe, Daniela; Weisshaar, Bernd; Minoche, André E; Dohm, Juliane C; Himmelbauer, Heinz; Schmidt, Thomas

    2012-11-01

    LTR retrotransposons and retroviruses are closely related. Although a viral envelope gene is found in some LTR retrotransposons and all retroviruses, only the latter show infectivity. The identification of Ty3-gypsy-like retrotransposons possessing putative envelope-like open reading frames blurred the taxonomical borders and led to the establishment of the Errantivirus, Metavirus and Chromovirus genera within the Metaviridae. Only a few plant Errantiviruses have been described, and their evolutionary history is not well understood. In this study, we investigated 27 retroelements of four abundant Elbe retrotransposon families belonging to the Errantiviruses in Beta vulgaris (sugar beet). Retroelements of the Elbe lineage integrated between 0.02 and 5.59 million years ago, and show family-specific variations in autonomy and degree of rearrangements: while Elbe3 members are highly fragmented, often truncated and present in a high number of solo LTRs, Elbe2 members are mainly autonomous. We observed extensive reshuffling of structural motifs across families, leading to the formation of new retrotransposon families. Elbe retrotransposons harbor a typical envelope-like gene, often encoding transmembrane domains. During the course of Elbe evolution, the additional open reading frames have been strongly modified or independently acquired. Taken together, the Elbe lineage serves as retrotransposon model reflecting the various stages in Errantivirus evolution, and allows a detailed analysis of retrotransposon family formation.

  6. The Sinbad retrotransposon from the genome of the human blood fluke, Schistosoma mansoni, and the distribution of related Pao-like elements

    Directory of Open Access Journals (Sweden)

    Morales Maria E

    2005-02-01

    Full Text Available Abstract Background Of the major families of long terminal repeat (LTR retrotransposons, the Pao/BEL family is probably the least well studied. It is becoming apparent that numerous LTR retrotransposons and other mobile genetic elements have colonized the genome of the human blood fluke, Schistosoma mansoni. Results A proviral form of Sinbad, a new LTR retrotransposon, was identified in the genome of S. mansoni. Phylogenetic analysis indicated that Sinbad belongs to one of five discreet subfamilies of Pao/BEL like elements. BLAST searches of whole genomes and EST databases indicated that members of this clade occurred in species of the Insecta, Nematoda, Echinodermata and Chordata, as well as Platyhelminthes, but were absent from all plants, fungi and lower eukaryotes examined. Among the deuterostomes examined, only aquatic species harbored these types of elements. All four species of nematode examined were positive for Sinbad sequences, although among insect and vertebrate genomes, some were positive and some negative. The full length, consensus Sinbad retrotransposon was 6,287 bp long and was flanked at its 5'- and 3'-ends by identical LTRs of 386 bp. Sinbad displayed a triple Cys-His RNA binding motif characteristic of Gag of Pao/BEL-like elements, followed by the enzymatic domains of protease, reverse transcriptase (RT, RNAseH, and integrase, in that order. A phylogenetic tree of deduced RT sequences from 26 elements revealed that Sinbad was most closely related to an unnamed element from the zebrafish Danio rerio and to Saci-1, also from S. mansoni. It was also closely related to Pao from Bombyx mori and to Ninja of Drosophila simulans. Sinbad was only distantly related to the other schistosome LTR retrotransposons Boudicca, Gulliver, Saci-2, Saci-3, and Fugitive, which are gypsy-like. Southern hybridization and bioinformatics analyses indicated that there were about 50 copies of Sinbad in the S. mansoni genome. The presence of ESTs

  7. Linking maternal and somatic 5S rRNA types with different sequence-specific non-LTR retrotransposons

    Science.gov (United States)

    Pagano, Johanna F.B.; Ensink, Wim A.; van Olst, Marina; van Leeuwen, Selina; Nehrdich, Ulrike; Zhu, Kongju; Spaink, Herman P.; Girard, Geneviève; Rauwerda, Han; Jonker, Martijs J.; Dekker, Rob J.

    2017-01-01

    5S rRNA is a ribosomal core component, transcribed from many gene copies organized in genomic repeats. Some eukaryotic species have two 5S rRNA types defined by their predominant expression in oogenesis or adult tissue. Our next-generation sequencing study on zebrafish egg, embryo, and adult tissue identified maternal-type 5S rRNA that is exclusively accumulated during oogenesis, replaced throughout the embryogenesis by a somatic-type, and thus virtually absent in adult somatic tissue. The maternal-type 5S rDNA contains several thousands of gene copies on chromosome 4 in tandem repeats with small intergenic regions, whereas the somatic-type is present in only 12 gene copies on chromosome 18 with large intergenic regions. The nine-nucleotide variation between the two 5S rRNA types likely affects TFIII binding and riboprotein L5 binding, probably leading to storage of maternal-type rRNA. Remarkably, these sequence differences are located exactly at the sequence-specific target site for genome integration by the 5S rRNA-specific Mutsu retrotransposon family. Thus, we could define maternal- and somatic-type MutsuDr subfamilies. Furthermore, we identified four additional maternal-type and two new somatic-type MutsuDr subfamilies, each with their own target sequence. This target-site specificity, frequently intact maternal-type retrotransposon elements, plus specific presence of Mutsu retrotransposon RNA and piRNA in egg and adult tissue, suggest an involvement of retrotransposons in achieving the differential copy number of the two types of 5S rDNA loci. PMID:28003516

  8. An LTR Retrotransposon-Derived Gene Displays Lineage-Specific Structural and Putative Species-Specific Functional Variations in Eutherians

    Science.gov (United States)

    Irie, Masahito; Koga, Akihiko; Kaneko-Ishino, Tomoko; Ishino, Fumitoshi

    2016-01-01

    Amongst the 11 eutherian-specific genes acquired from a sushi-ichi retrotransposon is the CCHC type zinc-finger protein-encoding gene SIRH11/ZCCHC16. Its contribution to eutherian brain evolution is implied because of its involvement in cognitive function in mice, possibly via the noradrenergic system. Although, the possibility that Sirh11/Zcchc16 functions as a non-coding RNA still remains, dN/dS ratios in pairwise comparisons between its orthologs have provided supportive evidence that it acts as a protein. It became a pseudogene in armadillos (Cingulata) and sloths (Pilosa), the only two extant orders of xenarthra, which prompted us to examine the lineage-specific variations of SIRH11/ZCCHC16 in eutherians. We examined the predicted SIRH11/ZCCHC16 open reading frame (ORF) in 95 eutherian species based on the genomic DNA information in GenBank. A large variation in the SIRH11/ZCCHC16 ORF was detected in several lineages. These include a lack of a CCHC RNA-binding domain in its C-terminus, observed in gibbons (Hylobatidae: Primates) and megabats (Megachiroptera: Chiroptera). A lack of the N-terminal half, on the other hand, was observed in New World monkeys (Platyrrhini: Primates) and species belonging to New World and African Hystricognaths (Caviomorpha and Bathyergidae: Rodents) along with Cetacea and Ruminantia (Cetartiodactyla). Among the hominoids, interestingly, three out of four genera of gibbons have lost normal SIRH11/ZCCHC16 function by deletion or the lack of the CCHC RNA-binding domain. Our extensive dN/dS analysis suggests that such truncated SIRH11/ZCCHC16 ORFs are functionally diversified even within lineages. Combined, our results show that SIRH11/ZCCHC16 may contribute to the diversification of eutherians by lineage-specific structural changes after its domestication in the common eutherian ancestor, followed by putative species-specific functional changes that enhanced fitness and occurred as a consequence of complex natural selection events. PMID:27446905

  9. Microarray analysis of LTR retrotransposon silencing identifies Hdac1 as a regulator of retrotransposon expression in mouse embryonic stem cells.

    Directory of Open Access Journals (Sweden)

    Judith Reichmann

    Full Text Available Retrotransposons are highly prevalent in mammalian genomes due to their ability to amplify in pluripotent cells or developing germ cells. Host mechanisms that silence retrotransposons in germ cells and pluripotent cells are important for limiting the accumulation of the repetitive elements in the genome during evolution. However, although silencing of selected individual retrotransposons can be relatively well-studied, many mammalian retrotransposons are seldom analysed and their silencing in germ cells, pluripotent cells or somatic cells remains poorly understood. Here we show, and experimentally verify, that cryptic repetitive element probes present in Illumina and Affymetrix gene expression microarray platforms can accurately and sensitively monitor repetitive element expression data. This computational approach to genome-wide retrotransposon expression has allowed us to identify the histone deacetylase Hdac1 as a component of the retrotransposon silencing machinery in mouse embryonic stem cells, and to determine the retrotransposon targets of Hdac1 in these cells. We also identify retrotransposons that are targets of other retrotransposon silencing mechanisms such as DNA methylation, Eset-mediated histone modification, and Ring1B/Eed-containing polycomb repressive complexes in mouse embryonic stem cells. Furthermore, our computational analysis of retrotransposon silencing suggests that multiple silencing mechanisms are independently targeted to retrotransposons in embryonic stem cells, that different genomic copies of the same retrotransposon can be differentially sensitive to these silencing mechanisms, and helps define retrotransposon sequence elements that are targeted by silencing machineries. Thus repeat annotation of gene expression microarray data suggests that a complex interplay between silencing mechanisms represses retrotransposon loci in germ cells and embryonic stem cells.

  10. Non-LTR R2 element evolutionary patterns: phylogenetic incongruences, rapid radiation and the maintenance of multiple lineages.

    Directory of Open Access Journals (Sweden)

    Andrea Luchetti

    Full Text Available Retrotransposons of the R2 superclade specifically insert within the 28S ribosomal gene. They have been isolated from a variety of metazoan genomes and were found vertically inherited even if their phylogeny does not always agree with that of the host species. This was explained with the diversification/extinction of paralogous lineages, being proved the absence of horizontal transfer. We here analyze the widest available collection of R2 sequences, either newly isolated from recently sequenced genomes or drawn from public databases, in a phylogenetic framework. Results are congruent with previous analyses, but new important issues emerge. First, the N-terminal end of the R2-B clade protein, so far unknown, presents a new zinc fingers configuration. Second, the phylogenetic pattern is consistent with an ancient, rapid radiation of R2 lineages: being the estimated time of R2 origin (850-600 Million years ago placed just before the metazoan Cambrian explosion, the wide element diversity and the incongruence with the host phylogeny could be attributable to the sudden expansion of available niches represented by host's 28S ribosomal genes. Finally, we detect instances of coexisting multiple R2 lineages showing a non-random phylogenetic pattern, strongly similar to that of the "library" model known for tandem repeats: a collection of R2s were present in the ancestral genome and then differentially activated/repressed in the derived species. Models for activation/repression as well as mechanisms for sequence maintenance are also discussed within this framework.

  11. Enhancement of Intranasal Vaccination in Mice with Deglycosylated Chain A Ricin by LTR72, a Novel Mucosal Adjuvant

    Science.gov (United States)

    2005-03-15

    author. Tel.: +1 301 619 7494; fax: +1 301 619 2348. E-mail address: meir.kende@amedd.army.mil (M. Kende). partially effective in inducing mucosal immunity , and... mucosal immunity . Parenteral administration of aluminum (alum) hydroxide or phosphate (the approved adjuvants for human use) with ricin toxoid

  12. Gypsies in the palace: Experimentalist's view on the use of 3-D physics-based simulation of hillslope hydrological response

    Science.gov (United States)

    James, A.L.; McDonnell, Jeffery J.; Tromp-Van Meerveld, I.; Peters, N.E.

    2010-01-01

    As a fundamental unit of the landscape, hillslopes are studied for their retention and release of water and nutrients across a wide range of ecosystems. The understanding of these near-surface processes is relevant to issues of runoff generation, groundwater-surface water interactions, catchment export of nutrients, dissolved organic carbon, contaminants (e.g. mercury) and ultimately surface water health. We develop a 3-D physics-based representation of the Panola Mountain Research Watershed experimental hillslope using the TOUGH2 sub-surface flow and transport simulator. A recent investigation of sub-surface flow within this experimental hillslope has generated important knowledge of threshold rainfall-runoff response and its relation to patterns of transient water table development. This work has identified components of the 3-D sub-surface, such as bedrock topography, that contribute to changing connectivity in saturated zones and the generation of sub-surface stormflow. Here, we test the ability of a 3-D hillslope model (both calibrated and uncalibrated) to simulate forested hillslope rainfall-runoff response and internal transient sub-surface stormflow dynamics. We also provide a transparent illustration of physics-based model development, issues of parameterization, examples of model rejection and usefulness of data types (e.g. runoff, mean soil moisture and transient water table depth) to the model enterprise. Our simulations show the inability of an uncalibrated model based on laboratory and field characterization of soil properties and topography to successfully simulate the integrated hydrological response or the distributed water table within the soil profile. Although not an uncommon result, the failure of the field-based characterized model to represent system behaviour is an important challenge that continues to vex scientists at many scales. We focus our attention particularly on examining the influence of bedrock permeability, soil anisotropy and drainable porosity on the development of patterns of transient groundwater and sub-surface flow. Internal dynamics of transient water table development prove to be essential in determining appropriate model parameterization. ?? 2010 John Wiley & Sons, Ltd.

  13. Protecting Delmarva Fox Squirrel Habitat from Gypsy Moth and Southern Pine Beetle at Blackwater National Wildlife Refuge

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — During the summer of 1992 and 1993, United States Department of Agriculture Forest Service personnel conducted an inventory and analysis of the forested resources at...

  14. Biological control of gypsy moth (Lymantria dispar): an RNAi-based approach and a case for DNA insecticides

    OpenAIRE

    Nyadar Palmahm; Zaitsev Aleksei S.; Tajudeen Adeyemi A.; Shumskykh Maksym N.; Oberemok Volodymyr V.

    2016-01-01

    The discovery of the post-transcriptional gene silencing (PTGS) mechanism, widely known as RNAi (RNA interference),has contributed towards the elucidation of the cellular machinery involved in the response against viral infections based on gene silencing, and in developmental regulation of translational suppression. The application of RNAi in insect pest management (IPM),and gene functional analysis, has been of enormous importance. Unfortunately, as RNAi h...

  15. Transcription profiling of 12 asian gypsy moth (Lymantria dispar) cytochrome P450 genes in response to insecticides.

    Science.gov (United States)

    Sun, Lili; Wang, Zhiying; Zou, Chuanshan; Cao, Chuanwang

    2014-04-01

    As the main group of detoxification enzymes, cytochrome P450 monoxygenases (P450s) catalyse an extremely diverse range of reactions that play an important role in the detoxification of foreign compounds. Transcription profiling of 12 Lymantria dispar P450 genes from the CYP6 subfamily believed to be involved in insecticide metabolism was performed in this study. Life-stage transcription profiling of CYP6 genes revealed significant variations between eggs, larvae, pupae, and adult males and females. Exposure of larvae to sublethal doses of deltamethrin, omethoate, and carbaryl enhanced the transcription of most of the CYP6 P450 genes, with induction peaking between 24 and 72 h after exposure. Transcription profiles were dependent on the levels of insecticide exposure and the various developmental stages.

  16. Full Body Tracker Gypsy Motion Capture System%走进动作捕捉技术的殿堂

    Institute of Scientific and Technical Information of China (English)

    周沁

    2002-01-01

    @@ 进入21世纪数字时代,动作捕捉技术已经做为一种强大的制作手段被充分地运用到影视、广告和游戏制作等相关行业中.随着计算机技术的发展与三维制作软件性能的提高,传统的全人工调整关键帧的制作方法已逐渐被高速度、高质量、极具真实性的动作捕捉技术配合人工调整关键帧的制作方法取代了.

  17. BEL/Pao retrotransposons in metazoan genomes

    Directory of Open Access Journals (Sweden)

    de la Chaux Nicole

    2011-06-01

    Full Text Available Abstract Background Long terminal repeat (LTR retrotransposons are a widespread kind of transposable element present in eukaryotic genomes. They are a major factor in genome evolution due to their ability to create large scale mutations and genome rearrangements. Compared to other transposable elements, little attention has been paid to elements belonging to the metazoan BEL/Pao subclass of LTR retrotransposons. No comprehensive characterization of these elements is available so far. The aim of this study was to describe all BEL/Pao elements in a set of 62 sequenced metazoan genomes, and to analyze their phylogenetic relationship. Results We identified a total of 7,861 BEL/Pao elements in 53 of our 62 study genomes. We identified BEL/Pao elements in 20 genomes where such elements had not been found so far. Our analysis shows that BEL/Pao elements are the second-most abundant class of LTR retrotransposons in the genomes we study, more abundant than Ty1/Copia elements, and second only to Ty3/Gypsy elements. They occur in multiple phyla, including basal metazoan phyla, suggesting that BEL/Pao elements arose early in animal evolution. We confirm findings from previous studies that BEL/Pao elements do not occur in mammals. The elements we found can be grouped into more than 1725 families, 1623 of which are new, previously unknown families. These families fall into seven superfamilies, only five of which have been characterized so far. One new superfamily is a major subdivision of the Pao superfamily which we propose to call Dan, because it is restricted to the genome of the zebrafish Danio rerio. The other new superfamily comprises 83 elements and is restricted to lower aquatic eumetazoans. We propose to call this superfamily Flow. BEL/Pao elements do not show any signs of recent horizontal gene transfer between distantly related species. Conclusions In sum, our analysis identifies thousands of new BEL/Pao elements and provides new insights into

  18. HIV-1 TAR element is processed by Dicer to yield a viral micro-RNA involved in chromatin remodeling of the viral LTR

    Directory of Open Access Journals (Sweden)

    McCaffrey Timothy

    2007-07-01

    Full Text Available Abstract Background RNA interference (RNAi is a regulatory mechanism conserved in higher eukaryotes. The RNAi pathway generates small interfering RNA (siRNA or micro RNA (miRNA from either long double stranded stretches of RNA or RNA hairpins, respectively. The siRNA or miRNA then guides an effector complex to a homologous sequence of mRNA and regulates suppression of gene expression through one of several mechanisms. The suppression of gene expression through these mechanisms serves to regulate endogenous gene expression and protect the cell from foreign nucleic acids. There is growing evidence that many viruses have developed in the context of RNAi and express either a suppressor of RNAi or their own viral miRNA. Results In this study we investigated the possibility that the HIV-1 TAR element, a hairpin structure of ~50 nucleotides found at the 5' end of the HIV viral mRNA, is recognized by the RNAi machinery and processed to yield a viral miRNA. We show that the protein Dicer, the enzyme responsible for cleaving miRNA and siRNA from longer RNA sequences, is expressed in CD4+ T-cells. Interestingly, the level of expression of Dicer in monocytes is sub-optimal, suggesting a possible role for RNAi in maintaining latency in T-cells. Using a biotin labeled TAR element we demonstrate that Dicer binds to this structure. We show that recombinant Dicer is capable of cleaving the TAR element in vitro and that TAR derived miRNA is present in HIV-1 infected cell lines and primary T-cell blasts. Finally, we show that a TAR derived miRNA is capable of regulating viral gene expression and may be involved in repressing gene expression through transcriptional silencing. Conclusion HIV-1 TAR element is processed by the Dicer enzyme to create a viral miRNA. This viral miRNA is detectable in infected cells and appears to contribute to viral latency.

  19. Biología y comportamiento de Polistes erythrocephalus Ltr. (Hyrnenoptera: vespidae, predador del "Gusano cachón" de la yuca Erinnyis ello L. (Lepidoptera: Sphingidae

    Directory of Open Access Journals (Sweden)

    Bellotti Anthony C.

    1986-03-01

    Full Text Available El ciclo de vida de Polistes erythrocephalus (latitud 3° 3D' N, longitud 76° 22' 21" W; 965 m.s.n.m.; 23.7° tiene una duración de 110 días, oscilando entre 91 y 131 días. La capacidad de predación en jaulas de malla (2.5 x 2.5 x 2.5 m depende del número de larvas. El consumo diario máximo fue de 1.3, el mínimo de 0.08 y el promedio de O.5larvasde E. ello (11 y 111 instar. No se encontraron machos en nidos menores de 50 celdas y en mayores de 50 celdas el número de machos incrementa con el crecimiento del nido llegando a ser casi igual al de las hembras. De 412 nidos el17 % estaban parasitados por Oxysarcodexia sp., (Diptera: Sacophagidae siendo el enemigo natural más frecuente de larvas y pupas de Polistes. Este insecto es a su vez parasitado por los himenópteros Pachyneuron sp. (Pteromalidae y Brachymeria conica Ashmead (Chalcididae.The duration average of the cycle life of P. erythrocephalus (Iatitude 3°30'N, longitude 76°22'21"W; 965 altitude; 23.7°C was 110 days and ranged between91 and 131 days. Predatory capacity depends on the number of larva. The maximum number of larva consumed by one Polistes larva per day was 1.3 and the minimum was 0.08 with a mean of 0.5 hornworm larva (11 y III instar. Males were not found in nests with less than 50 cells. In nests with more than 50 cells the number of males increase with increasing number of cells until they equal the number of female. Of the 412 nests examined, 17 % were attached by Oxysarcodexia sp [(Diptera: sarcophaqidae. This insect is in turn parasitized by several hymenoptera such as Pachyneuron sp (Pteromalidae y Brachymeria conica (Chalcididea.

  20. Genomic rearrangements at the FRA2H common fragile site frequently involve non-homologous recombination events across LTR and L1(LINE) repeats.

    Science.gov (United States)

    Brueckner, Lena M; Sagulenko, Evgeny; Hess, Elisa M; Zheglo, Diana; Blumrich, Anne; Schwab, Manfred; Savelyeva, Larissa

    2012-08-01

    Common fragile sites (cFSs) are non-random chromosomal regions that are prone to breakage under conditions of replication stress. DNA damage and chromosomal alterations at cFSs appear to be critical events in the development of various human diseases, especially carcinogenesis. Despite the growing interest in understanding the nature of cFS instability, only a few cFSs have been molecularly characterised. In this study, we fine-mapped the location of FRA2H using six-colour fluorescence in situ hybridisation and showed that it is one of the most active cFSs in the human genome. FRA2H encompasses approximately 530 kb of a gene-poor region containing a novel large intergenic non-coding RNA gene (AC097500.2). Using custom-designed array comparative genomic hybridisation, we detected gross and submicroscopic chromosomal rearrangements involving FRA2H in a panel of 54 neuroblastoma, colon and breast cancer cell lines. The genomic alterations frequently involved different classes of long terminal repeats and long interspersed nuclear elements. An analysis of breakpoint junction sequence motifs predominantly revealed signatures of microhomology-mediated non-homologous recombination events. Our data provide insight into the molecular structure of cFSs and sequence motifs affected by their activation in cancer. Identifying cFS sequences will accelerate the search for DNA biomarkers and targets for individualised therapies.

  1. HIIT och dess effekt på löpekonomi hos vältränade löpare och triatleter

    OpenAIRE

    Kalenius, Richard

    2015-01-01

    Background: Running economy is one of the key factors to achieve top performance in endurance events. Little evidence exists for improving running economy using high-intensity interval training while running.   Objectives: The purpose of this study was to examine how HIIT affects running economy and VO2max.   Method: 14 well-trained athletes (age 35 ± 8,9 years, height 175 ± 11,7 cm and weight 69 ± 12,2 kg) were divided into two separate groups (HIIT and Control). HIIT group performed 3 HIIT ...

  2. DOE/NV/26383-LTR2008-01 Letter Report Yucca Mountain Environmental Monitoring Systems Initiative - Air Quality Scoping Study for Caliente, Lincoln County, Nevada

    Energy Technology Data Exchange (ETDEWEB)

    J. Engelbrecht; I. Kavouras; D. Campbell; S. Campbell; S. Kohl; D. Shafer

    2009-04-02

    The Desert Research Institute (DRI) is performing a scoping study as part of the U.S. Department of Energy's Yucca Mountain Environmental Monitoring Systems Initiative (EMSI). The main objective is to obtain baseline air quality information for Yucca Mountain and an area surrounding the Nevada Test Site (NTS). Air quality and meteorological monitoring and sampling equipment housed in a mobile trailer (shelter) is collecting data at eight sites outside the NTS, including Ash Meadows National Wildlife Refuge (NWR), Beatty, Sarcobatus Flats, Rachel, Caliente, Pahranagat NWR, Crater Flat, and Tonopah Airport, and at four sites on the NTS (Engelbrecht et al., 2007a-d). The trailer is stationed at any one site for approximately eight weeks at a time. This letter report provides a summary of air quality and meteorological data, on completion of the site's sampling program.

  3. Chromosomal organizations of major repeat families on potato (Solanum tuberosum) and further exploring in its sequenced genome.

    Science.gov (United States)

    Tang, Xiaomin; Datema, Erwin; Guzman, Myriam Olortegui; de Boer, Jan M; van Eck, Herman J; Bachem, Christian W B; Visser, Richard G F; de Jong, Hans

    2014-12-01

    One of the most powerful technologies in unraveling the organization of a eukaryotic plant genome is high-resolution Fluorescent in situ hybridization of repeats and single copy DNA sequences on pachytene chromosomes. This technology allows the integration of physical mapping information with chromosomal positions, including centromeres, telomeres, nucleolar-organizing region, and euchromatin and heterochromatin. In this report, we established chromosomal positions of different repeat fractions of the potato genomic DNA (Cot100, Cot500 and Cot1000) on the chromosomes. We also analysed various repeat elements that are unique to potato including the moderately repetitive P5 and REP2 elements, where the REP2 is part of a larger Gypsy-type LTR retrotransposon and cover most chromosome regions, with some brighter fluorescing spots in the heterochromatin. The most abundant tandem repeat is the potato genomic repeat 1 that covers subtelomeric regions of most chromosome arms. Extensive multiple alignments of these repetitive sequences in the assembled RH89-039-16 potato BACs and the draft assembly of the DM1-3 516 R44 genome shed light on the conservation of these repeats within the potato genome. The consensus sequences thus obtained revealed the native complete transposable elements from which they were derived.

  4. Satellite DNA and Transposable Elements in Seabuckthorn (Hippophae rhamnoides), a Dioecious Plant with Small Y and Large X Chromosomes

    Science.gov (United States)

    Puterova, Janka; Razumova, Olga; Martinek, Tomas; Alexandrov, Oleg; Divashuk, Mikhail; Kubat, Zdenek; Hobza, Roman; Karlov, Gennady

    2017-01-01

    Seabuckthorn (Hippophae rhamnoides) is a dioecious shrub commonly used in the pharmaceutical, cosmetic, and environmental industry as a source of oil, minerals and vitamins. In this study, we analyzed the transposable elements and satellites in its genome. We carried out Illumina DNA sequencing and reconstructed the main repetitive DNA sequences. For data analysis, we developed a new bioinformatics approach for advanced satellite DNA analysis and showed that about 25% of the genome consists of satellite DNA and about 24% is formed of transposable elements, dominated by Ty3/Gypsy and Ty1/Copia LTR retrotransposons. FISH mapping revealed X chromosome-accumulated, Y chromosome-specific or both sex chromosomes-accumulated satellites but most satellites were found on autosomes. Transposable elements were located mostly in the subtelomeres of all chromosomes. The 5S rDNA and 45S rDNA were localized on one autosomal locus each. Although we demonstrated the small size of the Y chromosome of the seabuckthorn and accumulated satellite DNA there, we were unable to estimate the age and extent of the Y chromosome degeneration. Analysis of dioecious relatives such as Shepherdia would shed more light on the evolution of these sex chromosomes. PMID:28057732

  5. AcEST: DK945607 [AcEST

    Lifescience Database Archive (English)

    Full Text Available =Vitis... 33 5.6 tr|Q24748|Q24748_DROVI Mobile elemnt gypsy, complete OS=Drosophi...t: 274 QYAPYYNMPAQTPHAPYMSSHTGHASFNVAVAAAQSSHMQFHGLYHS 320 >tr|Q24748|Q24748_DROVI Mobile elemnt gypsy, comp

  6. 76 FR 60818 - Louisiana Public Service Commission v. Entergy Corporation, Entergy Services, Inc., Entergy...

    Science.gov (United States)

    2011-09-30

    ...), seeking a remedy to allocate and assign the Little Gypsy Repowering Project cancellation costs among all... in Service Schedule MSS-3 of the Entergy System Agreement to include the Little Gypsy...

  7. The N-Terminal GYPSY Motif Is Required for Pilin-Specific Sortase SrtC1 Functionality in Lactobacillus rhamnosus Strain GG

    NARCIS (Netherlands)

    Douillard, François P.; Rasinkangas, Pia; Bhattacharjee, Arnab; Palva, Airi; Vos, De Willem M.

    2016-01-01

    Predominantly identified in pathogenic Gram-positive bacteria, sortase-dependent pili are also found in commensal species, such as the probiotic-marketed strain Lactobacillus rhamnosus strain GG. Pili are typically associated with host colonization, immune signalling and biofilm formation. Compar

  8. Suppressor of hairy‐wing, modifier of mdg4 and centrosomal protein of 190 gene orthologues of the gypsy insulator complex in the malaria mosquito, Anopheles stephensi

    OpenAIRE

    Carballar‐Lejarazú, R.; Brennock, P; James, A. A.

    2016-01-01

    Abstract DNA insulators organize independent gene regulatory domains and can regulate interactions amongst promoter and enhancer elements. They have the potential to be important in genome enhancing and editing technologies because they can mitigate chromosomal position effects on transgenes. The orthologous genes of the Anopheles stephensi putative gypsy‐like insulator protein complex were identified and expression characteristics studied. These genes encode polypeptides with all the expecte...

  9. Animal or Plant Disease, Gypsy Moth spray blocks, Published in 2009, 1:24000 (1in=2000ft) scale, Wisconsin Department of Agriculture, Trade & Consumer Protection.

    Data.gov (United States)

    NSGIC GIS Inventory (aka Ramona) — This Animal or Plant Disease dataset, published at 1:24000 (1in=2000ft) scale, was produced all or in part from Other information as of 2009. It is described as...

  10. An Analysis of the Gypsies in George Eliot's Works%乔治·爱略特对吉卜赛人形象的重塑

    Institute of Scientific and Technical Information of China (English)

    汪宇

    2009-01-01

    乔治·爱略特突破了妖魔化或理想化的模式,重塑了吉普赛人形象.在她笔下,吉普赛人不再是神秘莫测、不食人间烟火的邪恶妖魔或高贵原始人,而是一群在苦难和迫害中仍然乐观生活、可敬可亲的普通人.这种重塑源自爱略特的人本主义宗教道德观.

  11. 犹太民族与吉卜赛民族之比较%A Comparison between Jewish People and Gypsy

    Institute of Scientific and Technical Information of China (English)

    冯定雄

    2010-01-01

    犹太民族与吉卜赛民族有很多极其相似的方面.但是,他们之间却有着根本的区别:前者是被迫流浪,后者则是主动流浪;前者有着精确的民族符号与记忆,后者则处于一种不甚清楚自己历史的模糊状态;前者是犹太教指南下的会堂集中生活,后者则是没有固定宗教的团体流动;前者通过努力终于重建了自己的民族国家,后者则继续重复着祖辈的流浪轨迹.

  12. 电磁辐射对舞毒蛾卵孵化率的影响%Influence of electromagnetic radiation on the hatchability of gypsy moth

    Institute of Scientific and Technical Information of China (English)

    李景奎; 戚大伟

    2007-01-01

    该文研究了电磁辐射对舞毒蛾卵孵化率的影响,其目的是为物理辐照灭虫的研究和实际应用提供理论依据.分别用微波、X射线、γ射线照射舞毒蛾卵,观察照射后卵孵化率变化情况.研究表明:经过微波、γ射线、X射线照射后卵孵化率都明显降低,但X射线、γ射线辐照剂量改变较小时对孵化率影响不明显,而微波辐射随着辐照剂量升高孵化率有明显下降趋势.

  13. Traditional Influence in Federico Garcia Lorca's Gypsy Ballads%《吉卜赛谣曲》中的传统因素

    Institute of Scientific and Technical Information of China (English)

    卜珊

    2005-01-01

    本文将集中讨论费德里科·加西亚·洛尔卡的中的一些传统因素,通过对这些因素的分析,从一个侧面来了解这位"二七年代"的代表诗人与西班牙古老的文学传统之间的密不可分的联系.

  14. 协合力:南疆的“吉普赛”村落%Xieheli, a Village of Gypsy Lifestyle in South Xinjiang

    Institute of Scientific and Technical Information of China (English)

    沈苇

    2012-01-01

    我去过协合力村两次。起因是有报道称那里是一个“吉普赛”村落。村民们有独特的生活方式:不爱种地。喜欢流浪,游走四方,靠乞讨、卖药草和看手相为生。至少,他们的生活是“吉普赛式”的。他们的村庄,只是他们漂泊回来后停息和落脚的大本营。他们有自己的语言(口语),与维吾尔语有很大的区别。尤其是乞讨,几乎是每个男性必须经历的,是生命中的必修课。因此,在一些人眼里,这是一个“乞丐村”。

  15. Study On Biological Characteristics And Control Mode Of Gypsy Moth%模毒蛾生物学特性及防治研究

    Institute of Scientific and Technical Information of China (English)

    王先礼

    2016-01-01

    通过对模毒蛾的形态特征、生活习性、天敌及防治情况进行研究,第—次准确认定模毒蛾在阿尔山林区一年发生一代,以卵在枯枝落叶层下越冬,也有少量在树皮缝等处越冬.5月下旬为幼虫始见期,7月初始化蛹,7月20日开始羽化为成虫,平均产卵量为110粒.在蛹期寄生蝇寄生率达34%,幼虫期以猎蝽和蝇类天敌取食率为5%.并简介了几种防治技术,为模毒蛾综合防治工作提供科学依据.

  16. γ射线辐照对舞毒蛾幼虫DNA作用的研究%Effects of Gesture Ray Irradiation on DNA of Gypsy Moth Larva

    Institute of Scientific and Technical Information of China (English)

    林海峰; 戚大伟; 李花顺

    2008-01-01

    应用γ射线辐照灭虫方法防治病虫害,可以避免化学防治的药物残留问题.采用不同剂量γ射线辐照舞毒蛾幼虫,再用经典的琼脂糖凝胶电泳检测DNA的损伤程度,研究γ射线对舞毒蛾幼虫细胞的生物学效应.实验结果表明:γ射线照射后的幼虫细胞核DNA片段的大小与辐照剂量之间有明显的剂量效应关系,这为物理灭虫提供理论数据.

  17. Conserved loci of leaf and stem rust fungi of wheat share synteny interrupted by lineage-specific influx of repeat elements

    Directory of Open Access Journals (Sweden)

    Fellers John P

    2013-01-01

    Full Text Available Abstract Background Wheat leaf rust (Puccinia triticina Eriks; Pt and stem rust fungi (P. graminis f.sp. tritici; Pgt are significant economic pathogens having similar host ranges and life cycles, but different alternate hosts. The Pt genome, currently estimated at 135 Mb, is significantly larger than Pgt, at 88 Mb, but the reason for the expansion is unknown. Three genomic loci of Pt conserved proteins were characterized to gain insight into gene content, genome complexity and expansion. Results A bacterial artificial chromosome (BAC library was made from P. triticina race 1, BBBD and probed with Pt homologs of genes encoding two predicted Pgt secreted effectors and a DNA marker mapping to a region of avirulence. Three BACs, 103 Kb, 112 Kb, and 166 Kb, were sequenced, assembled, and open reading frames were identified. Orthologous genes were identified in Pgt and local conservation of gene order (microsynteny was observed. Pairwise protein identities ranged from 26 to 99%. One Pt BAC, containing a RAD18 ortholog, shares syntenic regions with two Pgt scaffolds, which could represent both haplotypes of Pgt. Gene sequence is diverged between the species as well as within the two haplotypes. In all three BAC clones, gene order is locally conserved, however, gene shuffling has occurred relative to Pgt. These regions are further diverged by differing insertion loci of LTR-retrotransposon, Gypsy, Copia, Mutator, and Harbinger mobile elements. Uncharacterized Pt open reading frames were also found; these proteins are high in lysine and similar to multiple proteins in Pgt. Conclusions The three Pt loci are conserved in gene order, with a range of gene sequence divergence. Conservation of predicted haustoria expressed secreted protein genes between Pt and Pgt is extended to the more distant poplar rust, Melampsora larici-populina. The loci also reveal that genome expansion in Pt is in part due to higher occurrence of repeat-elements in this species.

  18. Annotation and sequence diversity of transposable elements in common bean (Phaseolus vulgaris

    Directory of Open Access Journals (Sweden)

    Scott eJackson

    2014-07-01

    Full Text Available Common bean (Phaseolus vulgaris is an important legume crop grown and consumed worldwide. With the availability of the common bean genome sequence, the next challenge is to annotate the genome and characterize functional DNA elements. Transposable elements (TEs are the most abundant component of plant genomes and can dramatically affect genome evolution and genetic variation. Thus, it is pivotal to identify TEs in the common bean genome. In this study, we performed a genome-wide transposon annotation in common bean using a combination of homology and sequence structure-based methods. We developed a 2.12-Mb transposon database which includes 791 representative transposon sequences and is available upon request or from www.phytozome.org. Of note, nearly all transposons in the database are previously unrecognized TEs. More than 5,000 transposon-related expressed sequence tags (ESTs were detected which indicates that some transposons may be transcriptionally active. Two Ty1-copia retrotransposon families were found to encode the envelope-like protein which has rarely been identified in plant genomes. Also, we identified an extra open reading frame (ORF termed ORF2 from 15 Ty3-gypsy families that was located between the ORF encoding the retrotransposase and the 3’LTR. The ORF2 was in opposite transcriptional orientation to retrotransposase. Sequence homology searches and phylogenetic analysis suggested that the ORF2 may have an ancient origin, but its function is not clear. This transposon data provides a useful resource for understanding the genome organization and evolution and may be used to identify active TEs for developing transposon-tagging system in common bean and other related genomes.

  19. Genome size and sequence composition of moso bamboo: A comparative study

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    Moso bamboo (Phyllostachys pubescens) is one of the world's most important bamboo species. It has the largest area of all planted bamboo―over two-thirds of the total bamboo forest area―and the highest economic value in China. Moso bamboo is a tetraploid (4x=48) and a special member of the grasses family. Although several genomes have been sequenced or are being sequenced in the grasses family, we know little about the genome of the bambusoids (bamboos). In this study, the moso bamboo genome size was estimated to be about 2034 Mb by flow cytometry (FCM), using maize (cv. B73) and rice (cv. Nipponbare) as internal references. The rice genome has been sequenced and the maize genome is being sequenced. We found that the size of the moso bamboo genome was similar to that of maize but significantly larger than that of rice. To determine whether the bamboo genome had a high proportion of repeat elements, similar to that of the maize genome, approximately 1000 genome survey sequences (GSS) were generated. Sequence analysis showed that the proportion of repeat elements was 23.3% for the bamboo genome, which is significantly lower than that of the maize genome (65.7%). The bamboo repeat elements were mainly Gypsy/DIRS1 and Ty1/Copia LTR retrotransposons (14.7%), with a few DNA transposons. However, more genomic sequences are needed to confirm the above results due to several factors, such as the limitation of our GSS data. This study is the first to investigate sequence composition of the bamboo genome. Our results are valuable for future genome research of moso and other bamboos.

  20. Sequencing chromosome 5D of Aegilops tauschii and comparison with its allopolyploid descendant bread wheat (Triticum aestivum).

    Science.gov (United States)

    Akpinar, Bala A; Lucas, Stuart J; Vrána, Jan; Doležel, Jaroslav; Budak, Hikmet

    2015-08-01

    Flow cytometric sorting of individual chromosomes and chromosome-based sequencing reduces the complexity of large, repetitive Triticeae genomes. We flow-sorted chromosome 5D of Aegilops tauschii, the D genome donor of bread wheat and sequenced it by Roche 454 GS FLX platform to approximately 2.2x coverage. Repetitive sequences represent 81.09% of the survey sequences of this chromosome, and Class I retroelements are the prominent type, with a particular abundance of LTR/Gypsy superfamily. Nonrepetitive sequences were assembled to cover 17.76% of the total chromosome regions. Up to 6188 nonrepetitive gene loci were predicted to be encoded by the 5D chromosome. The numbers and chromosomal distribution patterns of tRNA genes suggest abundance in tRNA(L) (ys) and tRNA(M) (et) species, while the nonrepetitive assembly reveals tRNA(A) (la) species as the most abundant type. A comparative analysis of the genomic sequences of bread wheat and Aegilops chromosome 5D indicates conservation of gene content. Orthologous unique genes, matching Aegilops 5D sequences, numbered 3730 in barley, 5063 in Brachypodium, 4872 in sorghum and 4209 in rice. In this study, we provide a chromosome-specific view into the structure and organization of the 5D chromosome of Ae. tauschii, the D genome ancestor of bread wheat. This study contributes to our understanding of the chromosome-level evolution of the wheat genome and presents a valuable resource in wheat genomics due to the recent hybridization of Ae. tauschii genome with its tetraploid ancestor.

  1. HIV-1 and HIV-2 LTR nucleotide sequences: assessment of the alignment by N-block presentation, "retroviral signatures" of overrepeated oligonucleotides, and a probable important role of scrambled stepwise duplications/deletions in molecular evolution.

    Science.gov (United States)

    Laprevotte, I; Pupin, M; Coward, E; Didier, G; Terzian, C; Devauchelle, C; Hénaut, A

    2001-07-01

    Previous analyses of retroviral nucleotide sequences, suggest a so-called "scrambled duplicative stepwise molecular evolution" (many sectors with successive duplications/deletions of short and longer motifs) that could have stemmed from one or several starter tandemly repeated short sequence(s). In the present report, we tested this hypothesis by focusing on the long terminal repeats (LTRs) (and flanking sequences) of 24 human and 3 simian immunodeficiency viruses. By using a calculation strategy applicable to short sequences, we found consensus overrepresented motifs (often containing CTG or CAG) that were congruent with the previously defined "retroviral signature." We also show many local repetition patterns that are significant when compared with simply shuffled sequences. First- and second-order Markov chain analyses demonstrate that a major portion of the overrepresented oligonucleotides can be predicted from the dinucleotide compositions of the sequences, but by no means can biological mechanisms be deduced from these results: some of the listed local repetitions remain significant against dinucleotide-conserving shuffled sequences; together with previous results, this suggests that interspersed and/or local mononucleotide and oligonucleotide repetitions could have biased the dinucleotide compositions of the sequences. We searched for suggestive evolutionary patterns by scrutinizing a reliable multiple alignment of the 27 sequences. A manually constructed alignment based on homology blocks was in good agreement with the polypeptide alignment in the coding sectors and has been exhaustively assessed by using a multiplied alphabet obtained by the promising mathematical strategy called the N-block presentation (taking into account the environment of each nucleotide in a sequence). Sector by sector, we hypothesize many successive duplication/deletion scenarios that fit our previous evolutionary hypotheses. This suggests an important duplication/deletion role for the reverse transcriptase, particularly in inducing stuttering cryptic simplicity patterns.

  2. Residues R{sup 199}H{sup 200} of prototype foamy virus transactivator Bel1 contribute to its binding with LTR and IP promoters but not its nuclear localization

    Energy Technology Data Exchange (ETDEWEB)

    Ma, Qinglin; Tan, Juan [Key Laboratory of Molecular Microbiology and Biotechnology (Ministry of Education) and Key Laboratory of Microbial Functional Genomics (Tianjin), College of Life Sciences, Nankai University, Tianjin 300071 (China); Cui, Xiaoxu [Key Laboratory of Molecular Microbiology and Biotechnology (Ministry of Education) and Key Laboratory of Microbial Functional Genomics (Tianjin), College of Life Sciences, Nankai University, Tianjin 300071 (China); Centre Laboratory, TianJin 4th Centre Hospital, Tianjin 300140 (China); Luo, Di; Yu, Miao [Key Laboratory of Molecular Microbiology and Biotechnology (Ministry of Education) and Key Laboratory of Microbial Functional Genomics (Tianjin), College of Life Sciences, Nankai University, Tianjin 300071 (China); Liang, Chen [Lady Davis Institute, Jewish General Hospital, Montreal, QC, Canada H3T 1E2 (Canada); Departments of Medicine McGill University, Montreal, QC (Canada); Microbiology and Immunology, McGill University, Montreal, QC (Canada); Qiao, Wentao, E-mail: wentaoqiao@nankai.edu.cn [Key Laboratory of Molecular Microbiology and Biotechnology (Ministry of Education) and Key Laboratory of Microbial Functional Genomics (Tianjin), College of Life Sciences, Nankai University, Tianjin 300071 (China)

    2014-01-20

    Prototype foamy virus encodes a transactivator called Bel1 that enhances viral gene transcription and is essential for PFV replication. Nuclear localization of Bel1 has been reported to rely on two proximal basic motifs R{sup 199}H{sup 200} and R{sup 221}R{sup 222}R{sup 223} that likely function together as a bipartite nuclear localization signal. In this study, we report that mutating R{sup 221}R{sup 222}R{sup 223}, but not R{sup 199}H{sup 200}, relocates Bel1 from the nucleus to the cytoplasm, suggesting an essential role for R{sup 221}R{sup 222}R{sup 223} in the nuclear localization of Bel1. Although not affecting the nuclear localization of Bel1, mutating R{sup 199}H{sup 200} disables Bel1 from transactivating PFV promoters. Results of EMSA reveal that the R{sup 199}H{sup 200} residues are vital for the binding of Bel1 to viral promoter DNA. Moreover, mutating R{sup 199}H{sup 200} in Bel1 impairs PFV replication to a much greater extent than mutating R{sup 221}R{sup 222}R{sup 223}. Collectively, our findings suggest that R{sup 199}H{sup 200} directly participate in Bel1 binding to viral promoter DNA and are indispensible for Bel1 transactivation activity. - Highlights: • The R{sup 221}R{sup 222}R{sup 223} residues are essential for the nuclear localization of Bel1. • Although not affecting the nuclear localization of Bel1, mutating R{sup 199}H{sup 200} disables Bel1 from transactivating PFV promoters. • The R{sup 199}H{sup 200} residues directly participate in Bel1 binding to viral promoter DNA. • Mutating R{sup 199}H{sup 200} in Bel1 impairs PFV replication to a much greater extent than mutating R{sup 221}R{sup 222}R{sup 223}.

  3. Prediction, Evolution and Expression Analysis of Reverse Transcriptase of LTR Retrotransposons in Pear%梨反转录转座子逆转录酶序列预测及其进化和转录分析

    Institute of Scientific and Technical Information of China (English)

    蒋爽; 蔡丹英; 滕元文

    2014-01-01

    基于生物信息学方法对‘酥梨’基因组中不同类型的逆转录酶进行预测,共获得345条copia 类和99条gypsy类逆转录酶.通过系统聚类,copia类逆转录酶可分为Ivana、Ale、TAR、Angela、Maximus 和Bianca等6类;gypsy类逆转录酶可分为Athila、Tat、CRM、Reina和Tekay等5类.序列比对结果显示梨中逆转录酶具有较高的异质性,copia类逆转录酶序列分歧度为0.44,gypsy类为0.38.挑选出8类逆转录酶设计引物,并对梨属其它植物进行PCR扩增,结果显示这8类逆转录酶广泛存在于梨属植物中.在砂梨品种‘圆黄’的叶片、种子和果实中均发现该8类逆转录酶存在一定的转录水平,这是首次发现在梨属植物正常生长组织中逆转录酶发生转录.

  4. Two large-scale analyses of Ty1 LTR-retrotransposon de novo insertion events indicate that Ty1 targets nucleosomal DNA near the H2A/H2B interface

    Directory of Open Access Journals (Sweden)

    Bridier-Nahmias Antoine

    2012-12-01

    Full Text Available Abstract Background Over the years, a number of reports have revealed that Ty1 integration occurs in a 1-kb window upstream of Pol III-transcribed genes with an approximate 80-bp periodicity between each integration hotspot and that this targeting requires active Pol III transcription at the site of integration. However, the molecular bases of Ty1 targeting are still not understood. Findings The publications by Baller et al. and Mularoni et al. in the April issue of Genome Res. report the first high-throughput sequencing analysis of Ty1 de novo insertion events. Their observations converge to the same conclusion, that Ty1 targets a specific surface of the nucleosome at he H2A/H2B interface. Conclusion This discovery is important, and should help identifying factor(s involved in Ty1 targeting. Recent data on transposable elements and retroviruses integration site choice obtained by large-scale analyses indicate that transcription and chromatin structure play an important role in this process. The studies reported in this commentary add a new evidence of the importance of chromatin in integration selectivity that should be of interest for everyone interested in transposable elements integration.

  5. 基于LQG/LTR方法的结构振动AMD控制Benchmark模型仿真分析%Simulation of Structure Vibration AMD Control Benchmark Model Base on LQG/LTR Method

    Institute of Scientific and Technical Information of China (English)

    杜永峰; 曹志峰; 孙玉萍

    2006-01-01

    LQG/LTR方法是基于回路传输恢复技术的LQG方法的简称,该方法是为了克服一般的LQG方法稳定裕量低发展而来,该控制方法的优越性已在土木工程结构振动控制领域得到了初步体现,文中主要是结合AMD 控制Benchmark模型,对该控制方法在传感器正常工作时和几种失效情况下的控制效果进行仿真分析,仿真结果表明该控制方法具有很好的控制效果并同时兼具较好的稳定性和鲁棒性.

  6. Striptiisi sünd Vanemuise laval

    Index Scriptorium Estoniae

    2001-01-01

    2. dets. esietendub Vanemuises Ameerika vodevillistaari ja striptiisikuninganna Rose Louise Hovicki memuaaridel põhinev muusikal "Gypsy", lavastaja Mare Tommingas, osades Silvi Vrait ja Helena Merzin

  7. Los términos del

    Directory of Open Access Journals (Sweden)

    Ivo Buzek

    2005-12-01

    Full Text Available The terms "Family" and "Gypsy names and their language" from Gypsy slang in current Spanish lexicography. The paper deals with two lexical fields in Spanish of Gypsy origin: "Family" and "The Title of Gypsies and their Language". It comments on their treatment in contemporary Spanish lexicography and analyses in detail their history in previous editions of the Dictionary of the Spanish Royal Academy. It questions the suitability of lexicographical marks used, mainly in the Academy's Dictionary. Finally, there is a general comparative study of the treatment of these lexical fields between the 22nd edition of the Dictionary (DRAE and Contemporary Spanish Dictionary (DEA. (Spanish text.

  8. Purification of Vip3Aa from Bacillus thuringiensis HD-1 and its contribution to toxicity of HD-1 to spruce budworm (Choristoneura fumiferana) and gypsy moth (Lymantria dispar) (Lepidoptera).

    Science.gov (United States)

    Milne, Ross; Liu, Yuehong; Gauthier, Debbie; van Frankenhuyzen, Kees

    2008-10-01

    We developed a protocol for obtaining high yields (10-15 mg per 1100 ml of culture supernatant) of highly purified (up to 95%) Vip3Aa protein from HD-1 cultures. The protocol is based on acetone precipitation of supernatant protein, followed by HPLC fractionation (DEAE-5PW column) and several concentration steps. Our protocol resulted in higher yields and purity of Vip3Aa than a previously published method [Estruch, J.J., Warren, G.W., Mullins, M.A., Nye, G.J., Craig, J.A., Koziel, M.G., 1996. Vip3A, a 353 novel Bacillus thuringiensis vegetative insecticidal protein with a wide spectrum of 354 activities against lepidopteran insects. Proc. Nat. Acad. Sci. USA 93, 5389-5394.]. This was achieved by using acetone rather than ammonium sulfate for precipitation of proteins from culture supernatants, and a shallow rather than a steep NaCl gradient for elution of the toxin, and by conducting all the purification steps at low temperature to prevent toxin degradation. In bioassays of the purified protein, Choristoneura fumiferana and Lymantria dispar larvae were less susceptible than Spodopteraexigua (10- and approximately 100-fold, respectively). A B. thuringiensis var. kurstaki strain HD-1 from which the vip3Aa gene had been deleted (EG12414) showed reduced toxicity to S. exigua relative to the unmodified parental strain (EG2001), but not to L. dispar or C. fumiferana. We interpret these results as indicating that the Vip3Aa toxin does not contribute measurably to pathogenicity of HD-1 in these species.

  9. Ser Gitano y Brasileño: migración, interculturalidad y ciudadanía en el sureste de Brasil, 1936-2007 = Being Gypsy and Brazilian: migration, interculturality and citizenship in southeastern Brazil, 1936 – 2007

    Directory of Open Access Journals (Sweden)

    Cairus, Brigitte Grossmann

    2010-01-01

    Full Text Available Não possui resumo em português Este ensayo explora la manera en la que los gitanos del este europeo definen su identidad dentro de la nación brasileña en relación con otros inmigrantes, ya sean estos de su mismo continente de origen o de otra parte del mundo. Aunque la “gitanidad” ha sido reconocida como un elemento vital de la cultura brasileña, los romanís brasileños han ejercido presión para obtener apoyo político, visibilidad y derechos de ciudadanía. Analizando esta lucha, examinaremos la construcción de la identidad que los gitanos mantienen basándose en mitos, lenguaje, valores, creencias, símbolos y lazos de parentesco dentro y fuera de Brasil. Asimismo, también analizaremos el ethos de deambular, hecho persistente a pesar de que muchos romanís brasileños han adquirido propiedades privadas y negocios en las principales ciudades del país. Por último, es necesario mencionar que el proceso de aculturación ha sido ambiguo para los gitanos, quienes siguen siendo tratados con un alto grado de indeseabilidad y exclusión dentro de la sociedad brasileña, a pesar de su presencia en el país desde el siglo XVI. Al mismo tiempo, los gitanos mantienen un aura de libertad y misticismo en el imaginario cultural brasileño, la cual puede encontrarse en literatura, telenovelas e incluso en Umbanda, es decir, prácticas religiosas afrobrasileñas. $$bspa

  10. 兴安落叶松Ty3-gypsy类逆转座子逆转录酶的多样性分析%Sequence Diversity Analysis of Reverse Transcriptases of Ty3-gypsy-like Retrotransposons in Larix gmelinii

    Institute of Scientific and Technical Information of China (English)

    张文波; 陈凌; 李雪辉; 白玉娥; 林晓飞

    2016-01-01

    为分析兴安落叶松(Larix gmelinii Rupr.)逆转座子的特点及其多样性与系统进化关系,本研究利用兼并-PCR技术克隆了27条Ty3-gypsy型逆转座子逆转录酶基因序列.这些核苷酸序列长度变化范围为376~417 bp,同源性范围为55.9%~91.4%,具有较高的异质性.系统聚类分析发现,这27条核苷酸序列被分为7个组.翻译成氨基酸后,其中有8条序列出现了终止密码子突变,有2条序列出现了移框突变.将其氨基酸序列与已登录的其它物种的Ty3-gypsy型逆转座子逆转录酶进行聚类分析发现,兴安落叶松的Ty3-gypsy型逆转座子与枣、黄瓜、可可树等同类型的逆转座子逆转录酶有较近的亲缘关系.以上研究表明兴安落叶松的逆转座子具有高度的多样性,可为分析兴安落叶松基因组构成及遗传多样性提供实验依据.

  11. The experiment of the pathogenicity of gypsy moth NPV on the larva of Antheraea pernyi%舞毒蛾病毒对柞蚕幼虫的致病性试验初报

    Institute of Scientific and Technical Information of China (English)

    翟丽敏; 李文斌; 王昶远; 徐吉良

    2005-01-01

    采用3种浓度的舞毒蛾NPV进行了舞毒蛾幼虫防治试验和柞蚕幼虫的致病性试验,结果表明防治舞毒蛾的效果在93%以上,对柞蚕幼虫无毒性和致死作用.应用舞毒蛾病毒方法简单,效果好,为今后在柞蚕场区防治舞毒蛾探索出了一条新路.

  12. X射线辐照对舞毒蛾幼虫死亡率和化蛹率的影响%Influence of X-ray irradiation on mortality and pupation rate of gypsy moth larvae

    Institute of Scientific and Technical Information of China (English)

    韩书霞; 戚大伟; 李景奎; 李花顺

    2007-01-01

    为了给物理辐照灭虫的研究和实际应用提供理论依据,文章分别用不同剂量的X射线照射舞毒蛾虫卵,观察照射后虫卵孵化、幼早死亡、化蛹等变化情况.实验表明,随着X射线辐剂量增大幼虫的死亡率有明显上升的趋势,而化蛹率有明显下降趋势.

  13. 浅谈《吉普塞之歌》的手风琴演奏%The Training of Touching Keys and of Music Felling--On the Song of Gypsy Played by Accordion

    Institute of Scientific and Technical Information of China (English)

    李丹

    2005-01-01

    手风琴曲,既展现了小提琴曲的神韵与特征,又充分体现了手风琴的乐器特征.此曲包含了连奏、断奏、刮奏、轮指、琶音、半音阶等演奏技巧.只有正确理解、合理运用其演奏技巧,才能表达出作品的思想感情,做到"情"与"琴"的融合.

  14. 苦难的诗意飞翔——简析《流浪者之歌》的艺术表达%The Promoting Of Miserable Romanticism——On The Artistic Explanation Of "Time Of The Gypsies"

    Institute of Scientific and Technical Information of China (English)

    王永收

    2008-01-01

    该片是导演埃米尔库斯图里卡作品中艺术价值颇高的一部,其中展现的家的观念与人性的乐观及苦难,展现了其作为一名艺术家对人的关怀.对现实的神奇表达、场面调度的充分应用以及民族音乐的创造性的运用展现了其作为一个世界级导演的功力与艺术水准.

  15. The processing effect to Gypsy moth eggs and larva by using microwave irradiation%微波辐照对舞毒蛾的卵及幼虫的处理效果

    Institute of Scientific and Technical Information of China (English)

    李景奎; 戚大伟

    2007-01-01

    本文根据微波与物质的相互作用情况,用微波照射舞毒蛾虫卵和幼虫,观察照射后虫卵孵化率和幼虫的死亡率的变化情况,目的是为物理辐照灭虫的研究和实际应用提供理论依据.实验表明:随着微波辐照剂量增大孵化率有明显下降趋势,而幼虫的死亡率有明显上升的趋势.

  16. 二胡曲《吉普赛之歌》作品与演奏析要%A Brief Analysis of the Composition & Performance of the Erhu Music"A song of Gypsy"

    Institute of Scientific and Technical Information of China (English)

    李铃

    2001-01-01

    @@ 二胡曲(亦名,以下简称曲),由西班牙萨拉萨蒂的同名小提琴曲移植而来.为了在演奏中能更准确、更深刻地表达这首名曲的风格和内涵,理当对吉普赛民族及其音乐、该曲的作者、创作背景、作品特色以及音乐家对该曲的评价有一定的了解,这是当今二胡演奏家和教育家们的共识.

  17. Secondary students’ self-regulated engagement in reading: researching self-regulation as situated in context

    Directory of Open Access Journals (Sweden)

    Deborah L. Butler

    2011-03-01

    Full Text Available In this research, we drew on a model of self-regulated learning (SRL (Butler & Cartier, 2005; Cartier & Butler, 2004 to investigate student engagement in learning through reading (LTR as situated in context. Our overarching goals were to enhance theoretical understanding about SRL as situated, identify patterns in self-regulated learning through reading (LTR for secondary students within and across classrooms, and continue developing productive methodological strategies for investigating SRL and LTR. To those ends, we employed a mixed-methods design to find patterns within and across 31 classrooms at multiple levels of aggregation. Participants were 646 secondary students engaged in curriculum-based LTR activities. Findings were derived from two coupled assessments: A self-report questionnaire and a performance-based measure of LTR. We used frequency, factor analytic, and cluster analyses to create descriptive profiles of SRL (across emotion, motivation, cognition, and metacognition. Main findings were: (1 important mismatches between students’ self-reported LTR engagement and the demands of LTR activities; (2 four coherent profiles of LTR engagement (actively engaged; disengaged; high stress/actively inefficient; passive/inactively efficient, (3 moderate links between students’ self-reported LTR profiles and LTR performance; and (4 differences in SRL profiles that reflected individual-context interactions. We close by distilling implications for understanding, researching, and fostering SRL as situated within naturalistic settings.

  18. New Insights into Nested Long Terminal Repeat Retrotransposons in Brassica Species

    Institute of Scientific and Technical Information of China (English)

    Lijuan Wei; Meili Xiao; Zeshan An; Bi Ma; Annaliese S.Mason; Wei Qian; Jiana Li

    2013-01-01

    Long terminal repeat (LTR) retrotransposons,one of the foremost types of transposons,continually change or modify gene function and reorganize the genome through bursts of dramatic proliferation.Many LTR-TEs preferentially insert within other LTR-TEs,but the cause and evolutionary significance of these nested LTR-TEs are not well understood.In this study,a total of 1.52 Gb of Brassica sequence containing 2020 bacterial artificial chromosomes (BACs) was scanned,and six bacterial artificial chromosome (BAC) clones with extremely nested LTR-TEs (LTR-TEs density:7.24/kb)were selected for further analysis.The majority of the LTR-TEs in four of the six BACs were found to be derived from the rapid proliferation of retrotransposons originating within the BAC regions,with only a few LTR-TEs originating from the proliferation and insertion of retrotransposons from outside the BAC regions approximately 5-23 Mya.LTR-TEs also preferably inserted into TA-rich repeat regions.Gene prediction by Genescan identified 207 genes in the 0.84 Mb of total BAC sequences.Only a few genes (3/207) could be matched to the Brassica expressed sequence tag (EST) database,indicating that most genes were inactive after retrotransposon insertion.Five of the six BACs were putatively centromeric.Hence,nested LTR-TEs in centromere regions are rapidly duplicated,repeatedly inserted,and act to suppress activity of genes and to reshuffle the structure of the centromeric sequences.Our results suggest that LTR-TEs burst and proliferate on a local scale to create nested LTR-TE regions,and that these nested LTR-TEs play a role in the formation of centromeres.

  19. Repetitive DNA in the pea (Pisum sativum L. genome: comprehensive characterization using 454 sequencing and comparison to soybean and Medicago truncatula

    Directory of Open Access Journals (Sweden)

    Navrátilová Alice

    2007-11-01

    Full Text Available Abstract Background Extraordinary size variation of higher plant nuclear genomes is in large part caused by differences in accumulation of repetitive DNA. This makes repetitive DNA of great interest for studying the molecular mechanisms shaping architecture and function of complex plant genomes. However, due to methodological constraints of conventional cloning and sequencing, a global description of repeat composition is available for only a very limited number of higher plants. In order to provide further data required for investigating evolutionary patterns of repeated DNA within and between species, we used a novel approach based on massive parallel sequencing which allowed a comprehensive repeat characterization in our model species, garden pea (Pisum sativum. Results Analysis of 33.3 Mb sequence data resulted in quantification and partial sequence reconstruction of major repeat families occurring in the pea genome with at least thousands of copies. Our results showed that the pea genome is dominated by LTR-retrotransposons, estimated at 140,000 copies/1C. Ty3/gypsy elements are less diverse and accumulated to higher copy numbers than Ty1/copia. This is in part due to a large population of Ogre-like retrotransposons which alone make up over 20% of the genome. In addition to numerous types of mobile elements, we have discovered a set of novel satellite repeats and two additional variants of telomeric sequences. Comparative genome analysis revealed that there are only a few repeat sequences conserved between pea and soybean genomes. On the other hand, all major families of pea mobile elements are well represented in M. truncatula. Conclusion We have demonstrated that even in a species with a relatively large genome like pea, where a single 454-sequencing run provided only 0.77% coverage, the generated sequences were sufficient to reconstruct and analyze major repeat families corresponding to a total of 35–48% of the genome. These data

  20. REARRANGEMENT IN THE B-GENOME FROM DIPLOID PROGENITOR TO WHEAT ALLOPOLYPOLID

    Directory of Open Access Journals (Sweden)

    Salina E.A.

    2012-08-01

    Full Text Available Three key periods that were accompanied by considerable rearrangements in the B genome of wheat and its progenitor can be considered. The first period covers the period from the divergence of diploid Triticum and Aegilops species from their common progenitor (2.5–6 million years ago to formation of the tetraploid T. diccocoides (about 500 thousand years ago. Significant genomic rearrangements in the diploid progenitor of the B genome, Ae. speltoides (SS genome, involved a considerable amplification of repeated DNA sequences, which led to an increase in the number of heterochromatin blocks on chromosomes relative to other diploid Aegilops and Triticum species. Our analysis has demonstrated that during this period the Spelt1 repeats intensively amplified as well as several mobile elements proliferated, in particular, the genome-specific gypsy LTR-retrotransposon Fatima and CACTA DNA-transposon Caspar. The second period in the B-genome evolution was associated with the emergence of tetraploid (BBAA genome and its subsequent evolution. The third most important event leading to the next rearrangement of the B genome took place relatively recently, 7000–9500 years ago, being associated with the emergence of hexaploid wheat with the genomic formula BBAADD. The evolution of the B/S genome involved intergenomic and intragenomic translocations and chromosome inversions. So far, five rearrangements in the B-genome chromosomes of polyploid wheats has been observed and described; the majority of them took place during the formation and evolution of tetraploid species. The mapping of the S-genome chromosomes and comparison with the B-genome chromosome maps have demonstrated that individual rearrangements pre-existed in Ae. speltoides; moreover, Ae. speltoides is polymorphic for these rearrangements.Chromosome 5B is nearly 870 Mbp (5BL = 580 Mbp and 5BS = 290 Mbp and is known to carry important genes controlling the key aspects of wheat biology, in

  1. COMPARISON OF SAMPLING TECHNIQUES USED IN STUDYING LEPIDOPTERA POPULATION DYNAMICS

    Science.gov (United States)

    Four methods (light traps, foliage samples, canvas bands, and gypsy moth egg mass surveys) that are used to study the population dynamics of foliage-feeding Lepidoptera were compared for 10 species, including gypsy moth, Lymantria dispar L. Samples were collected weekly at 12 sit...

  2. Refining the genetic portrait of Portuguese Roma through X-chromosomal markers

    DEFF Research Database (Denmark)

    Pereira, Vania; Gusmão, Leonor; Valente, Cristina

    2012-01-01

    of Portuguese Roma (Gypsies) by analyzing 43 X-chromosomal markers and 53 autosomal markers. Portuguese individuals of non-Gypsy ancestry were also studied. Compared with the host population, reduced levels of diversity on the X chromosome and autosomes were detected in Gypsies; this result was in line...... with known patterns of genetic diversity typical of Roma groups. As a consequence of the complex demographic past of the Roma, during which admixture and genetic drift played major roles, the amount of linkage disequilibrium (LD) on the X chromosome in Gypsies was considerably higher than that observed...... in non-Gypsies. When the pattern of differentiation on the X chromosome was compared with that of autosomes, there was evidence for asymmetries in female and male effective population sizes during the admixture between Roma and non-Roma. This result supplements previous data provided by mtDNA and the Y...

  3. BCL11B is a general transcriptional repressor of the HIV-1 long terminal repeat in T lymphocytes through recruitment of the NuRD complex.

    Science.gov (United States)

    Cismasiu, Valeriu B; Paskaleva, Elena; Suman Daya, Sneha; Canki, Mario; Duus, Karen; Avram, Dorina

    2008-10-25

    In this study we provide evidence that the transcription factor BCL11B represses expression from the HIV-1 long terminal repeat (LTR) in T lymphocytes through direct association with the HIV-1 LTR. We also demonstrate that the NuRD corepressor complex mediates BCL11B transcriptional repression of the HIV-1 LTR. In addition, BCL11B and the NuRD complex repressed TAT-mediated transactivation of the HIV-1 LTR in T lymphocytes, pointing to a potential role in initiation of silencing. In support of all the above results, we demonstrate that BCL11B affects HIV-1 replication and virus production, most likely by blocking LTR transcriptional activity. BCL11B showed specific repression for the HIV-1 LTR sequences isolated from seven different HIV-1 subtypes, demonstrating that it is a general transcriptional repressor for all LTRs.

  4. Isolation and characterization of putative functional long terminal repeat retrotransposons in the Pyrus genome

    OpenAIRE

    Jiang, Shuang; Cai, Danying; Sun, Yongwang; Teng, Yuanwen

    2016-01-01

    Background Long terminal repeat (LTR)-retrotransposons constitute 42.4 % of the genome of the ‘Suli’ pear (Pyrus pyrifolia white pear group), implying that retrotransposons have played important roles in Pyrus evolution. Therefore, further analysis of retrotransposons will enhance our understanding of the evolutionary history of Pyrus. Results We identified 1836 LTR-retrotransposons in the ‘Suli’ pear genome, of which 440 LTR-retrotransposons were predicted to contain at least two of three ge...

  5. Insertion of reticuloendotheliosis virus long terminal repeat into a bacterial artificial chromosome clone of a very virulent Marek's disease virus alters its pathogenicity.

    Science.gov (United States)

    Mays, Jody K; Silva, Robert F; Kim, Taejoong; Fadly, Aly

    2012-01-01

    Co-cultivation of the JM/102W strain of Marek's disease virus (MDV) with reticuloendotheliosis virus (REV) resulted in the generation of a recombinant MDV containing the REV long terminal repeat (LTR) named the RM1 strain of MDV, a strain that was highly attenuated for oncogenicity but induced severe bursal and thymic atrophy. We hypothesize that the phenotypic changes were solely due to the LTR insertion. Furthermore, we hypothesize that insertion of REV LTR into an analogous location in a different MDV would result in a similar phenotypic change. To test these hypotheses, we inserted the REV LTR into a bacterial artificial chromosome (BAC) clone of a very virulent strain of MDV, Md5, and designated the virus rMd5-RM1-LTR. The rMd5-RM1-LTR virus and the rMd5 virus were passaged in duck embryo fibroblast cells for up to 40 passages before pathogenicity studies. Susceptible chickens were inoculated intra-abdominally at hatch with the viruses rMd5-RM1-LTR, rMd5 BAC parental virus, wild-type strain Md5, or strain RM1 of MDV. The rMd5-RM1-LTR virus was attenuated at cell culture passage 40, whereas the rMd5 BAC without RM1 LTR retained its pathogenicity at cell culture passage 40. Using polymerase chain analysis, the RM1 LTR insert was detected in MDV isolated from buffy coat cells collected from chickens inoculated with rMd5-RM1-LTR, but only at 1 week post inoculation. The data suggest that the presence of the RM1 LTR insert within MDV genome for 1 week post inoculation with virus at hatch is sufficient to cause a reduction in pathogenicity of strain Md5 of MDV.

  6. Artificially inserting a reticuloendotheliosis virus long terminal repeat into a bacterial artificial chromosome clone of Marek's disease virus (MDV) alters expression of nearby MDV genes.

    Science.gov (United States)

    Kim, Taejoong; Mays, Jody; Fadly, Aly; Silva, Robert F

    2011-06-01

    Researchers reported that co-cultivating the JM/102W strain of Marek's disease virus (MDV) with reticuloendotheliosis virus (REV) resulted in an REV long terminal repeat (LTR) being inserted into the internal repeat short (IRS) region of JM/102W. When the resulting recombinant virus was serially passed in cell culture, the initial LTR was duplicated and a second LTR spontaneously appeared in the terminal repeat short (TRS) region of the MDV genome. The virus, designated RM1, was significantly attenuated but still induced severe bursal and thymic atrophy (Isfort et al. PNAS 89:991-995). To determine whether the altered phenotype was due solely to the LTR, we cloned the LTR from the RM1 IRS region and inserted it into the IRS region of a very virulent bacterial artificial clone (BAC) of the Md5 strain of MDV, which we designated rMd5-RM1-LTR. During blind passage in duck embryo fibroblast cultures, the initial LTR in the rMd5-RM1-LTR was also duplicated, with LTRs appearing in both IRS and TRS regions of the MDV genome. The inserted LTR sequences and transcripts associated with the MDV open reading frames MDV085, MDV086, SORF2, US1, and US10 were molecularly characterized. The parental Md5 BAC contains a family of transcripts of 3, 2, and 1 kb that all terminate at the end of the US10 gene. The rMd5-RM1-LTR and RM1 viruses both express an additional 4 kb transcript that originates in the LTR and also terminates after US10. Collectively, the data suggest that our engineered rMd5-RM1-LTR virus very closely resembles the RM1 virus in its structure and transcription patterns.

  7. Idefix insulator activity can be modulated by nearby regulatory elements

    OpenAIRE

    Brasset, E; Bantignies, F.; Court, F. (Franck); Cheresiz, S.; C. Conte; Vaury, C.

    2007-01-01

    Insulators play important roles in controlling gene activity and maintaining regulatory independence between neighbouring genes. In this article, we show that the enhancer-blocking activity of the insulator present within the LTR retrotransposon Idefix can be abolished if two copies of the region containing the insulator—specifically, the long terminal repeat (LTR)—are fused to the retrotransposon's 5′ untranslated region (5′ UTR). The presence of this combination of two [LTR-5′ UTR] modules ...

  8. Zero assignment and loop transfer recovery in LQG design

    Science.gov (United States)

    Shafai, B.; Beale, S.; Keel, L. H.

    1990-01-01

    The problem of loop transfer recovery (LTR) in linear quadratic Gaussian (LQG) design via observers is discussed. The LTR for both minimum and nonminimum phase systems is considered. For minimum phase systems, perfect recovery approaches are provided based on Luenberger proportional observer and proportional integral observer. For nonminimum phase systems, recent LTR approaches are summarized and the possibility of a new technique based on zero assignment is examined.

  9. Publications of the Division of Mechanical Engineering and the National Aeronautical Establishment. Series Number 2, Supplement Number 7.

    Science.gov (United States)

    1982-01-01

    1219 A Survey of Fatal Aircraft Accidents Involving Metal Fatigue - Final Report, by G.S. Campbell, December 1980. LTR-ST-1224 Le Choix des Materiaux ...Cutting Cold River Ice with Water Jets during the Winter 1977-78, by D.B. Coveney and W.H. Brierley, June 1979. LTR-LT-100 Traction Motor Suspension ...and P.F. Hearty, November 1979. LTR-LT-106 Traction Motor Suspension Bearing Leakage Tests. Phase 11, by J.F. Lane and D.E. Morris, October 1979. LTR-LT

  10. Protein (Cyanobacteria): 144862 [PGDBj - Ortholog DB

    Lifescience Database Archive (English)

    Full Text Available ded protein LtrA-like (Includes: Reverse-transcriptase ; RNA maturase ; HNH endonuclease) (fragment) Arthros...pira sp. PCC 8005 MNLSRILRETSKQNHYDGCGFQNPAGMKKAGMGIPTIQDRAKQALVKSALEPEWESRFEGTSYGFRPGRSAQDAIARIYLCINHSDYYVLDADIACETFRSEIGLQCLK ...

  11. Protein (Cyanobacteria): 144863 [PGDBj - Ortholog DB

    Lifescience Database Archive (English)

    Full Text Available ded protein LtrA-like (Includes: Reverse-transcriptase ; RNA maturase ; HNH endonuclease) (fragment) Arthros...pira sp. PCC 8005 MNWLRALREISKPNHCDGCGFQNLEGMKKAGMGIPTIQDRARQALVKSALEPEWESRFEGTSYGFRPGRSAQDAIARIYSSINKGEYFVLDAGARRSGMK ...

  12. Clinical perspectives and murine models of lichenoid tissue reaction/interface dermatitis.

    Science.gov (United States)

    Okiyama, Naoko; Fujimoto, Manabu

    2015-06-01

    A set of histopathological elements, that is death of epidermal basal cell layer keratinocytes and inflammatory cell infiltration, distinguishes lichenoid tissue reaction (LTR)/interface dermatitis (IFD) from other inflammatory mucocutaneous diseases with histological findings of superficial perivascular dermatitis. The LTR/IFD is observed in inflammatory mucocutaneous diseases such as lichen planus, Stevens-Johnson syndrome/toxic epidermal necrolysis, acute graft-versus-host disease, lupus erythematosus and dermatomyositis. Clinical and basic researches have suggested that keratinocytes are antigen-presenting cells and mediate LTR/IFD reaction via production of cytokines/chemokines and inhibitory molecules such as programmed cell death (PD)-L1, and that cytotoxic CD8(+) T cells producing cytotoxic granules, perforin, granzyme B and granulysin are final effector cells to cause keratinocyte death. Because interferon-γ and FasL, which are produced by not only CD8(+) but also CD4(+) T cells, are candidates of the pathogenic molecules in LTR/IFD, CD4(+) T cells may also play a role to develop LTR/IFD. On the other hand, CD4(+) Treg cells accelerate the remission of LTR/IFD. Some murine models of LTR/IFD have been established. For example, LTR/IFD reactions were induced in keratinocyte-specific membrane-binding ovalbumin-transgenic (mOVA Tg) mice by adoptive transfer of CD8(+) T cells with OVA-specific T-cell-receptor. It has also been shown that human CD8(+) T cells are pathogenic immune cells in human skin-xenografted mice. Various immunosuppressants are used to treat patients with mucocutaneous diseases with LTR/IFD. By analysis of the mOVA Tg mice, a JAK inhibitor was suggested to be a new candidate drug to inhibit not only pathogenic T cells but also keratinocyte death in LTR/IFD. More specific treatments for patients with LTR/IFD will be developed in future.

  13. Horror Infiniti. Die Zigeuner als Europas Trickster

    Directory of Open Access Journals (Sweden)

    Leonardo Piasere

    2011-06-01

    Full Text Available The figure of trickster is well known to all folklore traditions round the world, even among Romanispeaking groups as beng (devil like in the Mediterranean and Balkan context. But the focus of thearticle concerns the transformation of Roma and other Gypsies themselves into tricksters, whichcan be shown in three examples: 1 Gypsies in the literature of the Italian Renaissance, 2 Gypsiesin the Rumanian Þsiganiada of the early 19th century and 3 the Gypsy cliché in the ethnographyof the 20th century, which comes near to the bricoleur of Lévi-Strauss or to an indefinable entitycomparable with the irrational numbers in mathematics.

  14. Dynamics and Robust Control of a Sampled Data System for Large Space Structures. Volume 2. The LQG/LTR Methodology for the Discrete-time System and the Design of Reduced Order Robust Digital Controller for Orbiting Flexible Shallow Spherical Shell System.

    Science.gov (United States)

    1992-11-01

    from our mailing list, or if the addressee is no longer employed by your organization please notify WL/ FIBRA , Wright-Patterson AFB OH 45433-6553 to help...Venkayya (513-255-7191) AGENCY REPORT NUMBER Flight Dynamics Directorate (WL/ FIBRA ) Wright Laboratory WL-TR-92-3089 Air Force Systems Command Wright...Venkayya, WL/ FIBRA Principal Scientist and Project Engineer who directed this effort and helped provide support. Also the authors thank Mr. Duane

  15. Patterns of Proteins that Associate with p53 or with p53 Binding Sites Present in the Ribosomal Gene Cluster and MDM2 (P2) Promoter

    Science.gov (United States)

    2000-08-01

    factor receptor (efr) (Ludes-Meyers, et al., 1996), proliferating cell nuclear antigen (pCna) (Deb et al., 1992), the multi drug resistant gene (mdr-1...by the HlV -LTR (Subler et al., 1994; Gualberto and Baldwin, 1995). 4 Mutant p53 proteins may activate transcription of the HIV-LTR by cooperation

  16. Artifically inserting a reticuloendotheliosis virus long terminal repeat into a bacterial artificial chromosome clone of Marek's disease virus (MDV) alters expression of nearby MDV genes

    Science.gov (United States)

    The long terminal repeat (LTR) sequence of reticuloendotheliosis virus (REV) was inserted into the very virulent Marek’s disease virus (MDV) Md5 bacterial artificial chromosome clone. The insertion site was nearly identical to the REV LTR that was naturally inserted into the JM/102W strain of MDV fo...

  17. Some observations on the pathogenicity of a molecular clone of a very virulent strain of Marek’s disease virus containing an insert of long terminal repeat of reticuloendotheliosis virus

    Science.gov (United States)

    We recently artificially inserted REV LTR into a bacterial artificial chromosome (BAC) clone of a very virulent strain of Marek’s disease (MD) virus (MDV), Md5; the virus was designated rMd5-RM1-LTR (Kim et al., 2011). In the present study, susceptible chickens of ADOL line 15I5 X 71 with and witho...

  18. High Rate of Chimeric Gene Origination by Retroposition in Plant Genomes

    DEFF Research Database (Denmark)

    Wang, Wen; Zheng, Hongkung; Fan, Chuanzhu;

    2006-01-01

    and a reported long terminal repeat (LTR) retrotransposon-mediated mechanism of retroposing cellular genes in maize (Zea mays). We show extensive retropositions in the rice (Oryza sativa) genome, with 1235 identified primary retrogenes. We identified 27 of these primary retrogenes within LTR retrotransposons...

  19. NCBI nr-aa BLAST: CBRC-TTRU-01-1000 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-TTRU-01-1000 ref|ZP_06018941.1| low temperature requirement protein LtrA [Lact...obacillus crispatus MV-3A-US] gb|EEX30492.1| low temperature requirement protein LtrA [Lactobacillus crispatus MV-3A-US] ZP_06018941.1 0.001 23% ...

  20. Estimating head and body length in fossil rodents

    NARCIS (Netherlands)

    Freudenthal, M.; Martín-Suárez, E.

    2015-01-01

    We present estimates for head and body length (HBL) of fossil rodents. We assembled HBL data and tooth row length data (LTR, UTR) for a large number of extant rodents, and calculated regression lines of HBL on LTR and UTR for all rodents together (all-rodents equation), and for separate taxonomic gr

  1. Dicty_cDB: VSK419 [Dicty_cDB

    Lifescience Database Archive (English)

    Full Text Available quence. 38 1.8 5 AL845481 |AL845481.5 Zebrafish DNA sequence from clone DKEY-46N18 in linkage group 17. 36 2.1 6 X15345 |X15345.1 Ham...ster H-19 proviral DNA (LTR- v-src -LTR). 34 2.2 2 dna u

  2. Mapping the genes for susceptibility and response to Leishmania tropica in mouse.

    Directory of Open Access Journals (Sweden)

    Yahya Sohrabi

    Full Text Available BACKGROUND: L. tropica can cause both cutaneous and visceral leishmaniasis in humans. Although the L. tropica-induced cutaneous disease has been long known, its potential to visceralize in humans was recognized only recently. As nothing is known about the genetics of host responses to this infection and their clinical impact, we developed an informative animal model. We described previously that the recombinant congenic strain CcS-16 carrying 12.5% genes from the resistant parental strain STS/A and 87.5% genes from the susceptible strain BALB/c is more susceptible to L. tropica than BALB/c. We used these strains to map and functionally characterize the gene-loci regulating the immune responses and pathology. METHODS: We analyzed genetics of response to L. tropica in infected F2 hybrids between BALB/c×CcS-16. CcS-16 strain carries STS-derived segments on nine chromosomes. We genotyped these segments in the F2 hybrid mice and tested their linkage with pathological changes and systemic immune responses. PRINCIPAL FINDINGS: We mapped 8 Ltr (Leishmania tropica response loci. Four loci (Ltr2, Ltr3, Ltr6 and Ltr8 exhibit independent responses to L. tropica, while Ltr1, Ltr4, Ltr5 and Ltr7 were detected only in gene-gene interactions with other Ltr loci. Ltr3 exhibits the recently discovered phenomenon of transgenerational parental effect on parasite numbers in spleen. The most precise mapping (4.07 Mb was achieved for Ltr1 (chr.2, which controls parasite numbers in lymph nodes. Five Ltr loci co-localize with loci controlling susceptibility to L. major, three are likely L. tropica specific. Individual Ltr loci affect different subsets of responses, exhibit organ specific effects and a separate control of parasite load and organ pathology. CONCLUSION: We present the first identification of genetic loci controlling susceptibility to L. tropica. The different combinations of alleles controlling various symptoms of the disease likely co-determine different

  3. [Mucocutaneous diseases and murine models with death of keratinocytes induced by lichenoid tissue reaction/interface dermatitis].

    Science.gov (United States)

    Okiyama, Naoko

    2015-01-01

    A set of histopathological elements with death of epidermal basal cell layer keratinocytes along with inflammatory cell infiltration distinguishes lichenoid tissue reaction (LTR)/interface dermatitis (IFD) from other inflammatory mucocutaneous diseases. The LTR/IFD can be seen in skin disorders like as lichen planus, acute graft-versus-host disease, lupus erythematosus, dermatomyositis, and toxic epidermal necrolysis/Stevesn-Johnson syndrome. Clinical and basic researches suggested that cytotoxic CD8 T cells producing interferon-γ and FasL are final effector cells to cause apoptosis of keratinocyte. Some murine models of LTR/IFD have been established, for example, LTR/IFD reactions of keratinocyte-specific ovalbumin (OVA)-transgenic mice after OVA-specific T-cell-receptor(+)CD8 T cells. By analysis of the murine model, a new class of immunosuppressant, a JAK inhibitor, has been suggested as a new candidate for treatment of LTR/IFD.

  4. Un petit chemin qui ne sent pas la noisette!

    CERN Multimedia

    2006-01-01

    Travelling gypsies settle very often in Echevenex. Due to the lack of toilettes, they use a nice shaded path to make their bodily needs... Sanitary problems appeared and the inhabitants of Echenevex announce their anger

  5. Plaadid / Valner Valme

    Index Scriptorium Estoniae

    Valme, Valner, 1970-

    2003-01-01

    Uutest plaatidest Smashing Pumpkins "Earphoria", "Jazzland Remixed 2", Ekrem & Gypsy Groovz "Rivers Of Happiness", Trio Tesis "Los Pasos Perdidos", Willie Nelson & Friends "Stars & Guitars", Victor Davies "Remixes", Velikije Luki "Tallinn põleb!", Mario Frangoulis "Sometimes I Dream"

  6. Eicosanoids influence insect susceptibility to nucleopolyhedroviruses

    Science.gov (United States)

    Nine pharmaceutical inhibitors of eicosanoid biosynthesis (e.g., bromophenacyl bromide, clotrimazole, diclofenamic acid, esculetin, flufenamic acid, domethacin, nimesulide, sulindac, tolfenamic acid) that increased the susceptibility of the gypsy moth, Lymantria dispar (L.), to the nucleopolyhedrovi...

  7. Effects of host heterogeneity on pathogen diversity and evolution

    DEFF Research Database (Denmark)

    Fleming-Davies, Arietta E; Dukic, Vanja; Andreasen, Viggo;

    2015-01-01

    Phenotypic variation is common in most pathogens, yet the mechanisms that maintain this diversity are still poorly understood. We asked whether continuous host variation in susceptibility helps maintain phenotypic variation, using experiments conducted with a baculovirus that infects gypsy moth...

  8. Angloromani

    DEFF Research Database (Denmark)

    Bakker, Peter

    2007-01-01

    Angloromani is a language spoken by English Travellers, in which the grammatical system is from English but the vocabulary from Romani (Gypsy language). In the article structural and sociolinguistic aspects are discussed.......Angloromani is a language spoken by English Travellers, in which the grammatical system is from English but the vocabulary from Romani (Gypsy language). In the article structural and sociolinguistic aspects are discussed....

  9. Molecular characterization of tat gene and long terminal repeat region of human immunodeficiency virus type-1 detected among the injecting drug users (IDUs) of Manipur, India: identification of BC recombinants.

    Science.gov (United States)

    Mullick, Ranajoy; Sengupta, Satarupa; Sarkar, Kamalesh; Chakrabarti, Sekhar

    2010-02-01

    The tat gene of human immunodeficiency virus type-1 (HIV-1) is responsible for the initiation and elongation of viral transcription through the LTR (long terminal repeat) transactivation process. Our study included structural and functional analyses of the tat gene and LTR region of 35 injecting drug users (IDUs) from Manipur (a north-eastern state in India and a potential source of HIV-1 recombinants) in order to search for the recombinants and variation in the transactivation process if any due to recombination. Analysis showed prevalence of subtype C with few BC recombinants for the tat gene showing identical recombination breakpoints. Phylogenetic analysis of the LTR region of those IDU strains showed strong resemblance to Indian subtype C forming a completely separate cluster from the other global C LTR sequences. The TAR element (transactivator response region) in all the LTR sequences was fairly conserved. Further study of the transactivation rate of the C and BC tat for the Manipur C LTR showed almost equal transactivity in both the cases. This is the first report of characterisation of tat gene and LTR region of HIV-1 samples among IDUs from north-eastern India.

  10. Transcriptional and Bioinformatic Analysis Provide a Relationship between Host Response Changes to Marek’s Disease Viruses Infection and an Integrated Long Terminal Repeat

    Directory of Open Access Journals (Sweden)

    Ning eCui

    2016-04-01

    Full Text Available GX0101, Marek’s disease virus (MDV strain with a long terminal repeat (LTR insert of reticuloendotheliosis virus (REV, was isolated from CVI988/Rispens vaccinated birds showing tumors. We have constructed a LTR deleted strain GX0101∆LTR in our previous study. To compare the host responses to GX0101 and GX0101∆LTR, chicken embryo fibroblasts (CEF cells were infected with two MDV strains and a gene-chip containing chicken genome was employed to examine gene transcription changes in host cells in the present study. Of the 42 368 chicken transcripts on the chip, there were 2199 genes that differentially expressed in CEF infected with GX0101 compared to GX0101∆LTR significantly. Differentially expressed genes were distributed to 25 possible gene networks according to their intermolecular connections and were annotated to 56 pathways. The insertion of REV LTR showed the greatest influence on cancer formation and metastasis, followed with immune changes, atherosclerosis and nervous system disorders in MDV-infected CEF cells. Based on these bio functions, GX0101 infection was predicated with a greater growth and survival inhibition but lower oncogenicity in chickens than GX0101∆LTR, at least in the acute phase of infection. In summary, the insertion of REV LTR altered the expression of host genes in response to MDV infection, possibly resulting in novel phenotypic properties in chickens. Our study has provided the evidence of retroviral insertional changes of host responses to herpesvirus infection for the first time, which will promote to elucidation of the possible relationship between the LTR insertion and the observed phenotypes.

  11. Toxoplasma gondii chromodomain protein 1 binds to heterochromatin and colocalises with centromeres and telomeres at the nuclear periphery.

    Directory of Open Access Journals (Sweden)

    Mathieu Gissot

    Full Text Available BACKGROUND: Apicomplexan parasites are responsible for some of the most deadly parasitic diseases afflicting humans, including malaria and toxoplasmosis. These obligate intracellular parasites exhibit a complex life cycle and a coordinated cell cycle-dependant expression program. Their cell division is a coordinated multistep process. How this complex mechanism is organised remains poorly understood. METHODS AND FINDINGS: In this study, we provide evidence for a link between heterochromatin, cell division and the compartmentalisation of the nucleus in Toxoplasma gondii. We characterised a T. gondii chromodomain containing protein (named TgChromo1 that specifically binds to heterochromatin. Using ChIP-on-chip on a genome-wide scale, we report TgChromo1 enrichment at the peri-centromeric chromatin. In addition, we demonstrate that TgChromo1 is cell-cycle regulated and co-localised with markers of the centrocone. Through the loci-specific FISH technique for T. gondii, we confirmed that TgChromo1 occupies the same nuclear localisation as the peri-centromeric sequences. CONCLUSION: We propose that TgChromo1 may play a role in the sequestration of chromosomes at the nuclear periphery and in the process of T. gondii cell division.

  12. Efficient replication and expression of murine leukemia virus with major deletions in the enhancer region of U3

    DEFF Research Database (Denmark)

    Pedersen, K.; Lovmand, S.; Bonefeld-Jørgensen, Eva Cecilie;

    1992-01-01

    The effect of deletions within the enhancer region in the U3 part of the LTR derived from the murine retrovirus Akv was studied. The deletions were stably transmitted through normal virus replication as shown by sequence analysis of cloned polymerase chain reaction product of the cDNA copy...... level of virus with the deleted LTRs all reached the level of virus with the intact LTR. We propose that stimulatory cis-acting sequences either adjacent to the site of proviral integration or in the coding regions of the provirus may compensate for deletions in the LTR....

  13. Frequencies of Ty1-copia and Ty3-gypsy retroelements within the Avena EST database%燕麦EST数据库中Ty1-copia和Ty3-gypsy型反转录转座子的频数分析

    Institute of Scientific and Technical Information of China (English)

    郭红媛; 贾举庆; 张莉; 靳艳婷; 侯莎莎; 杨武德

    2014-01-01

    为研究转座元件(Transposable elements,TEs)在燕麦中的表达模式,以14个Ty1-copia型反转录转座子和3个Ty3-gypsy型反转录转座子序列为种子序列对燕麦属(Avena)表达序列标签(EST)数据库中的Ty1-copia和Ty3-gypsy型反转录转座子进行检索和分析.结果表明:燕麦根中反转录转座子的频率显著高于叶(P<0.05);强降雨模式的胁迫环境下叶组织中反转录转座子的EST频率显著高于大气降雨下的(P<0.05),约为正常条件下的(E<e-10,0.12%)2倍;Ty1-copia和Ty3-gypsy型反转录转座子在根的分蘖期频率差异极显著(P<0.01).这些结果揭示了燕麦属Ty1-copia和Ty3-gypsy型反转录转座子的转录存在组织和发育的时空特异性及环境应答现象,为预测重复元件的表达模式提供了依据.同时,检索到的反转录转座子也有助于对燕麦基因组序列的注释.

  14. "Gypsy Women" and "Saint Angel"——The Contrast between Female in Turgenev's Love Works%"茨冈女人"与"纯洁天使"——论屠格涅夫爱情作品中的女性对立

    Institute of Scientific and Technical Information of China (English)

    黎杨全

    2008-01-01

    在屠格涅夫的爱情故事中,女性人物设置呈现为"茨冈女人"与"纯洁天使"的对立,在爱情的"竞争"中,前者总是"打败"后者.这种人物对立原则,有时体现为两个人物共时的并置,有时又体现为主人公历时的心理转变,而在根本上,它隐喻着屠格涅夫的爱情观.

  15. 不同地理种群二化螟Ty3/gypsy反转座子天冬氨酰蛋白酶(AP)基因序列的克隆与分析%Molecular cloning and analysis of aspartic protease (AP) gene in Ty3/ gypsy retrotransposon in different geographical populations of Chilo suppressalis (Lepidoptera: Pyralidae) in China

    Institute of Scientific and Technical Information of China (English)

    李晓欢; 罗光华; 韩召军; 方继朝

    2014-01-01

    [目的]Ty3/gypsy反转座子是广泛存在于生物体内的一类反转座子.反转座子上的天冬氨酰蛋白酶(aspartic protease,AP)基因是反转座子发生转座所需的一个重要基因.但由于该基因家族成员间变异较大,较难利用简并引物克隆得到该基因,所以对该基因家族成员的研究很少.[方法]本研究采用PCR方法克隆了二化螟Ty3/gypsy反转座子的AP基因序列,并对其序列特征和地理种群变异进行了分析.[结果]克隆获得的二化螟Chilo suppressalis (Walker) Ty3/gypsy反转座子中的AP基因具有独立的开放阅读框(open reading frame,ORF),长528 bp,编码的蛋白含175个氨基酸残基(GenBank登录号:KF886014).Conserved Domain Search在线工具分析显示,该蛋白中含有一个特异的Asp_protease_2保守功能域.从7个二化螟不同地理种群中共克隆获得70份AP基因拷贝.对同一基因座位上的AP序列多重比对分析,发现共存在46处碱基替换,其中碱基转换(transition)有31处,碱基颠换(transversion)有 15处,70份拷贝中有69份拷贝是完整的ORF,能编码完整的蛋白.从碱基替换形式看,A→G的变异形式出现最多,有15处;其次是T→C的变异形式,有11处;其余的变异形式都很少.对比这7个不同地理种群,没有发现碱基的替换存在明显的地理区划差异.[结论]碱基的替换形式与二化螟所处的地理区域无明显相关性.本研究对于认识反转座子序列的变异特点有所帮助.

  16. The Analysis of the Problem of Urban Transportation from the Perspective of Game Theory:A Case Study of the Improvement and Rectification of the Gypsy Cab Drivers%“钓鱼执法”的利益博弈与机制分析

    Institute of Scientific and Technical Information of China (English)

    陈元志

    2013-01-01

    在城市基础设施和公共交通发展仍然面临瓶颈的特定时期,容纳黑车有可能会成为政府的无奈之举.执法部门为了提高打击黑车的积极性,允许将罚款收入按照一定比例用于奖励执法人员.这样的机制设计,有可能使得执法部门的诉求由公共福利水平最大化偏离到部门利益最大化.

  17. Main: HBOXCONSENSUSPVCHS [PLACE

    Lifescience Database Archive (English)

    Full Text Available uced by wounding and by abiotic stress; KAP-2 binds to the H-box and stimulates t...d elicitor induction; Similar sequence was found in tobacco Tnt1 retrotransposon promoter (LTR); Tnt1 is ind

  18. Reference: SRENTTTO1 [PLACE

    Lifescience Database Archive (English)

    Full Text Available SRENTTTO1 Takeda S, Sugimoto K, Otsuki H, Hirochika H A 13-bp cis-regulatory elemen...t in the LTR promoter of the tobacco retrotransposon Tto1 is involved in responsiveness to tissue culture, w

  19. Main: ERELEE4 [PLACE

    Lifescience Database Archive (English)

    Full Text Available t) of tomato (L.e.) E4 and carnation GST1 genes; GST1 is related to senescence; Found in the 5'-LTR region o...; tomato (Lycopersicon esculentum); carnation (Dianthus caryophyllus); Lycopersicon chilense; AWTTCAAA ...

  20. HIV transcription is induced in dying cells

    Energy Technology Data Exchange (ETDEWEB)

    Woloschak, G.E.; Chang-Liu, Chin-Mei [Argonne National Lab., IL (United States); Schreck, S. [Argonne National Lab., IL (United States)]|[Univ. of South Carolina, Columbia, SC (United States). Dept. of Chemistry; Panozzo, J. [Loyola Univ. Medical Center, Maywood, IL (United States); Libertin, C.R. [Loyola Univ. Medical Center, Maywood, IL (United States)

    1996-02-01

    Using HeLa cells stably transfected with an HIV-LTR-CAT construct, we demonstrated a peak in CAT induction that occurs in viable (but not necessarily cell-division-competent) cells 24 h following exposure to some cell-killing agents. {gamma} rays were the only cell-killing agent which did not induce HIV transcription; this can be attributed to the fact that {gamma}-ray-induced apoptotic death requires functional p53, which is not present in HeLa cells. For all other agents, HIV-LTR induction was dose-dependent and correlated with the amount of cell killing that occurred in the culture. Doses which caused over 99% cell killing induced HIV-LTR transcription maximally, demonstrating that cells that will go on to die by 14 days are the cells expressing HIV-LTR-CAT.

  1. Human Endogenous Retrovirus Group E and Its Involvement in Diseases

    Directory of Open Access Journals (Sweden)

    Christelle Le Dantec

    2015-03-01

    Full Text Available Human endogenous retrovirus group E (HERV-E elements are stably integrated into the human genome, transmitted vertically in a Mendelian manner, and are endowed with transcriptional activity as alternative promoters or enhancers. Such effects are under the control of the proviral long terminal repeats (LTR that are organized into three HERV-E phylogenetic subgroups, namely LTR2, LTR2B, and LTR2C. Moreover, HERV-E expression is tissue-specific, and silenced by epigenetic constraints that may be disrupted in cancer, autoimmunity, and human placentation. Interest in HERV-E with regard to these conditions has been stimulated further by concerns regarding the capacity of HERV-E elements to modify the expression of neighboring genes and/or to produce retroviral proteins, including immunosuppressive env peptides, which in turn may induce (auto-antibody (Ab production. Finally, better understanding of HERV-E elements may have clinical applications for prevention, diagnosis, prognosis, and therapy.

  2. Dose establishing a safety margin reduce local recurrence in subsegmental transarterial chemoembolization for small nodular hepatocellular carcinomas?

    Energy Technology Data Exchange (ETDEWEB)

    Kang, Hyo Jin; Kim, Young Il; Kim, Hyo Cheol; Jae, Hwan Jun; Hur, Sae Beam; Chung, Jin Wook [Dept. of Radiology, Seoul National University Hospital, Seoul(Korea, Republic of)

    2015-10-15

    To test the hypothesis that a safety margin may affect local tumor recurrence (LTR) in subsegmental chemoembolization. In 101 patients with 128 hepatocellular carcinoma (HCC) nodules (1-3 cm in size and ≤ 3 in number), cone-beam CT-assisted subsegmental lipiodol chemoembolization was performed. Immediately thereafter, a non-contrast thin-section CT image was obtained to evaluate the presence or absence of intra-tumoral lipiodol uptake defect and safety margin. The effect of lipiodol uptake defect and safety margin on LTR was evaluated. Univariate and multivariate analyses were performed to indentify determinant factors of LTR. Of the 128 HCC nodules in 101 patients, 49 (38.3%) nodules in 40 patients showed LTR during follow-up period (median, 34.1 months). Cumulative 1- and 2-year LTR rates of nodules with lipiodol uptake defect (n = 27) and those without defect (n = 101) were 58.1% vs. 10.1% and 72.1% vs. 19.5%, respectively (p < 0.001). Among the 101 nodules without a defect, the 1- and 2-year cumulative LTR rates for nodules with complete safety margin (n = 52) and those with incomplete safety margin (n = 49) were 9.8% vs. 12.8% and 18.9% vs. 19.0% (p = 0.912). In multivariate analyses, ascites (p = 0.035), indistinct tumor margin on cone-beam CT (p = 0.039), heterogeneous lipiodol uptake (p = 0.023), and intra-tumoral lipiodol uptake defect (p < 0.001) were determinant factors of higher LTR. In lipiodol chemoembolization, the safety margin in completely lipiodolized nodule without defect will not affect LTR in small nodular HCCs.

  3. The Advanced Technical Data Research Study. Phase 1. Abstracts of Available Data

    Science.gov (United States)

    1973-01-01

    Boeing personnel) that they could use non-engineering SHEEf • 11 Ol 4IOt IIS40ni« 3/71 "■ COMPMtNV NUMBER D180-17523-1 REV LTR c z o...display equipment is mandatory. SHEEf 12 Ol 4t0t UUORia 1/71 ( ( UJ < Z 0. oc o L b. CO»wi^AfS«¥ NUMBER D180-17523-1 REV LTR An

  4. Eigenstructure Conditions for Loop Transfer Recovery

    OpenAIRE

    Søgaard-Andersen, Per

    1988-01-01

    Conditions for loop transfer recovery based on eigenstructure assignment are derived. These conditions imply constraints on the eigenvalues and certain parameter vectors of the controller. Three cases emerge - depending on the geometric stucture of the plant. For all cases explicit design rules are derived. The eigenstructure-LTR approach provides - beyond insight into mechanisms of LTR - improved flexibility in selecting the controller gains and faster recovery convergence as compared with t...

  5. Effective blocking of the white enhancer requires cooperation between two main mechanisms suggested for the insulator function.

    Directory of Open Access Journals (Sweden)

    Olga Kyrchanova

    Full Text Available Chromatin insulators block the action of transcriptional enhancers when interposed between an enhancer and a promoter. In this study, we examined the role of chromatin loops formed by two unrelated insulators, gypsy and Fab-7, in their enhancer-blocking activity. To test for this activity, we selected the white reporter gene that is activated by the eye-specific enhancer. The results showed that one copy of the gypsy or Fab-7 insulator failed to block the eye enhancer in most of genomic sites, whereas a chromatin loop formed by two gypsy insulators flanking either the eye enhancer or the reporter completely blocked white stimulation by the enhancer. However, strong enhancer blocking was achieved due not only to chromatin loop formation but also to the direct interaction of the gypsy insulator with the eye enhancer, which was confirmed by the 3C assay. In particular, it was observed that Mod(mdg4-67.2, a component of the gypsy insulator, interacted with the Zeste protein, which is critical for the eye enhancer-white promoter communication. These results suggest that efficient enhancer blocking depends on the combination of two factors: chromatin loop formation by paired insulators, which generates physical constraints for enhancer-promoter communication, and the direct interaction of proteins recruited to an insulator and to the enhancer-promoter pair.

  6. Effects of drought stress and nutrient availability on dry matter allocation, phenolic glycosides, and rapid induced resistance of poplar to two lymantriid defoliators.

    Science.gov (United States)

    Hale, Bethan K; Herms, Daniel A; Hansen, Robert C; Clausen, Thomas P; Arnold, Danielle

    2005-11-01

    The growth-differentiation balance hypothesis (GDBH) postulates that variation in resource availability can increase or decrease allocation to secondary metabolism, depending on how growth is affected relative to carbon assimilation. Growth and leaf area of black poplar (Populus nigra) increased substantially in response to increased nutrient availability, while net assimilation rate and photosynthesis were less strongly affected. In response, total phenolic glycoside concentrations declined, which is consistent with GDBH. Drought stress decreased net assimilation rate and photosynthesis as well as growth, while increasing total phenolic glycoside concentrations. This pattern does not follow GDBH, which predicts lower secondary metabolism when resource limitation decreases both growth and carbon assimilation. However, there was a strong negative correlation between growth and total phenolic glycoside concentration consistent with a trade-off between primary and secondary metabolism, a key premise of GDBH. Drought decreased the growth of gypsy moth (Lymantria dispar) larvae but had no effect on whitemarked tussock moth (Orgyia leucostigma). Increased nutrient availability had a positive linear effect on growth of whitemarked tussock moth, but no effect on gypsy moth. Treatment effects on gypsy moth corresponded closely with effects on total phenolic glycosides, whereas effects on whitemarked tussock moth more closely tracked changes in nutritional quality. Localized gypsy moth herbivory elicited rapid induced resistance to gypsy moth, with the effect being independent of water and nutrient availability, but did not affect whitemarked tussock moth, indicating that the effects of biotic and abiotic stress on insect resistance of trees can be species-specific.

  7. Relative age of proviral porcine endogenous retrovirus sequences in Sus scrofa based on the molecular clock hypothesis.

    Science.gov (United States)

    Tönjes, Ralf R; Niebert, Marcus

    2003-11-01

    Porcine endogenous retroviruses (PERV) are discussed as putative infectious agents in xenotransplantation. PERV classes A, B, and C harbor different envelope proteins. Two different types of long terminal repeat (LTR) structures exist, of which both are present only in PERV-A. One type of LTR contains a distinct repeat structure in U3, while the other is repeatless, conferring a lower level of transcriptional activity. Since the different LTR structures are distributed unequally among the proviruses and, apparently, PERV is the only virus harboring two different LTR structures, we were interested in determining which LTR is the ancestor. Replication-competent viruses can still be found today, suggesting an evolutionary recent origin. Our studies revealed that the age of PERV is at most 7.6 x 10(6) years, whereas the repeatless LTR type evolved approximately 3.4 x 10(6) years ago, being the phylogenetically younger structure. The age determined for PERV correlates with the time of separation between pigs (Suidae, Sus scrofa) and their closest relatives, American-born peccaries (Tayassuidae, Pecari tajacu), 7.4 x 10(6) years ago.

  8. Endogenous retroviral LTRs as promoters for human genes: a critical assessment.

    Science.gov (United States)

    Cohen, Carla J; Lock, Wynne M; Mager, Dixie L

    2009-12-15

    Gene regulatory changes are thought to be major factors driving species evolution, with creation of new regulatory regions likely being instrumental in contributing to diversity among vertebrates. There is growing appreciation for the role of transposable elements (TEs) in gene regulation and, indeed, laboratory investigations have confirmed many specific examples of mammalian genes regulated by promoters donated by endogenous retroviruses (ERVs) or other TEs. Bioinformatics studies have revealed hundreds of additional instances where this is likely to be the case. Since the long terminal repeats (LTRs) of retroviruses naturally contain abundant transcriptional regulatory signals, roles for ERV LTRs in regulating mammalian genes are eminently plausible. Moreover, it seems reasonable that exaptation of an LTR regulatory module provides opportunities for evolution of new gene regulatory patterns. In this Review we summarize known examples of LTRs that function as human gene alternative promoters, as well as the evidence that LTR exaptation has resulted in a pattern of novel gene expression significantly different from the pattern before LTR insertion or from that of gene orthologs lacking the LTR. Available data suggest that, while new expression patterns can arise as a result of LTR usage, this situation is relatively rare and is largely restricted to the placenta. In many cases, the LTR appears to be a minor, alternative promoter with an expression pattern similar to that of the native promoter(s) and hence likely exerts a subtle overall effect on gene expression. We discuss these findings and offer evolutionary models to explain these trends.

  9. Prejudice, Social Dominance, and Similarity among People who Favor Integration of Minorities.

    Science.gov (United States)

    Martínez, Carmen; Saiz, José; Angosto, Josefa

    2016-04-12

    This study examines differences in prejudice, perceived similarity, and social dominance in members of the majority who favor integration as a means of minority acculturation. A total of 342 non-Gypsy Spanish participants filled out a questionnaire about their relationship to one of three outgroups: Maghrebians, Gypsies, and Latin Americans. Hierarchical cluster analysis showed that a three-cluster solution was most fitting for every outgroup. ANOVAs applied to the three clusters indicated significant differences in prejudice, perceived similarity, and social dominance. Referring to Gypsies the largest effect size was observed in manifest prejudice (η2 = .63), in Maghrebians, the largest effect size was observed in subtle prejudice (η2 =.77), while for Latin Americans, perceived similarity had the largest effect size η2 ( = .60). The results reveal a need to modify existing measures of integration; we recommend using questionnaires to measure behaviors that members of the majority would be willing to implement.

  10. Os ciganos do Rio Grande do Norte : caminhos e trânsitos

    Directory of Open Access Journals (Sweden)

    Lisabete Coradini

    2014-01-01

    Full Text Available According to the first registers made by partnerships between research groups and support, such as the Federal University of Rio Grande do Norte (RN and the Pastoral of the Nomads of Brazil (Pastoral dos Nômades do Brasil, the state of RN has a Gypsy population of around 5 400 people. This population is distributed in twelve cities in the state, where 70% of this total are sedentary Gypsies. The aim of this study is to provide an initial mapping, drawing a picture of the situation in which they are. For this, we used qualitative methods, including present observation, as well as interviews and audiovisual registration along with the Gypsy comunities on the periphery of the city of Natal and in the interior of RN.

  11. SER GITANA EN EL SUR DE ESPAÑA Y EN BRASIL: IDENTIDADES, EXPERIENCIAS Y VIOLENCIAS

    Directory of Open Access Journals (Sweden)

    Fernanda Pattaro Amaral

    2015-06-01

    Full Text Available Este artículo busca comprender la violencia existente hacia la sociedad gitana femenina en el contexto de dos países: España y Brasil. La elección de España se justifica en sus lazos estrechos con la comunidad gitana y su intercambio cultural. Al sur de este país, la región conocida como Andalucía, tiene una fuerte representación cultural gitana y una buena integración entre las dos culturas. A pesar de ello, todavía persiste allí la violencia hacia las gitanas. Por otro lado, se analiza la comunidad gitana en Brasil, país que tiene la mayor población de gitanos en América y, sin embargo, reproduce los mismos signos de violencia hacia las gitanas. AbstractThis paper aims to understand the violence against the female gypsy society in two countries, Spain and Brazil. Spain was chosen because of its connection with the gypsy community and its cultural interchange. In the south of Spain there is a region known as Andalucía, that has a strong cultural gypsy presence and integration with both cultures. In spite of this, violence against gypsy women and girls is still present. On the other hand, the gypsy community in Brazil is analyzed because it’s the country with the largest population of gypsies in America; however, the same signs of violence against their women and girls are shown

  12. Refining the genetic portrait of Portuguese Roma through X-chromosomal markers.

    Science.gov (United States)

    Pereira, Vânia; Gusmão, Leonor; Valente, Cristina; Pereira, Rui; Carneiro, João; Gomes, Iva; Morling, Niels; Amorim, António; João Prata, Maria

    2012-07-01

    Due to differences in transmission between X-chromosomal and autosomal DNA, the comparison of data derived from both markers allows deeper insight into the forces that shape the patterns of genetic diversity in populations. In this study, we applied this comparative approach to a sample of Portuguese Roma (Gypsies) by analyzing 43 X-chromosomal markers and 53 autosomal markers. Portuguese individuals of non-Gypsy ancestry were also studied. Compared with the host population, reduced levels of diversity on the X chromosome and autosomes were detected in Gypsies; this result was in line with known patterns of genetic diversity typical of Roma groups. As a consequence of the complex demographic past of the Roma, during which admixture and genetic drift played major roles, the amount of linkage disequilibrium (LD) on the X chromosome in Gypsies was considerably higher than that observed in non-Gypsies. When the pattern of differentiation on the X chromosome was compared with that of autosomes, there was evidence for asymmetries in female and male effective population sizes during the admixture between Roma and non-Roma. This result supplements previous data provided by mtDNA and the Y chromosome, underlining the importance of using combined information from the X chromosome and autosomes to dissect patterns of genetic diversity. Following the out-of-India dispersion, the Roma acquired a complex genetic pattern that was influenced by drift and introgression with surrounding populations, with important contributions from both males and females. We provide evidence that a sex-biased admixture with Europeans is probably associated with the founding of the Portuguese Gypsies.

  13. PROCESOS DE “INTEGRACIÓN” DE LA ETNIA GITANA EN ESPAÑA REFLEXIÓN DESDE LA ANTROPOLOGÍA APLICADA Y EL TRABAJO SOCIAL

    Directory of Open Access Journals (Sweden)

    Rosana Matos-Silveira

    2015-06-01

    Full Text Available This article aims to reflect on the processes of integration / non-integration of the Roma Comunity in Spain. We present focus the historical process of this town highlighting the secular stigma have lived (and live and then to present concrete life situations "integration / non-integration" in two Spanish provinces: Valencia and Granada. There are generalizable data but can serve as a proxy for understanding how some people manage to live gypsy culture in ethnic minority without losing their identity of being and feeling Gypsies / as and sometimes not.

  14. Ethnologie der Zigeuner. Von der Begegnung zur Theoriebildung

    Directory of Open Access Journals (Sweden)

    Patrick Williams

    2011-06-01

    Full Text Available To all Gypsy groups the factum is common, that they are firmly enclosed by a society, from whichthey want to keep distance. Analyzing the relations between this communities and the larger societymeets tendencies of amalgamating as well as tendencies of separating. Among the latter the originalityand creativity in putting together the ‘own culture’ are striking, so that a permanent significatof distance (Gypsy identity is opposed to flexible significants of distancing (cultural traits, whichare often transformed elements of the majority culture.

  15. Animal Funs%动物趣闻

    Institute of Scientific and Technical Information of China (English)

    齐志刚

    2006-01-01

    @@ ★ The giant squid (大鱿鱼), found usually in the deep reaches(河段,流域 ) of the oceans,has the largest eye of any animal. ★ A male gypsy moth (吉普赛蛾) can smell a female gypsy moth in heat (处于发情期的) up to a mile and a half away. ★ A squirrel(松鼠) cannot contract (染上疾病) or carry the rabies virus (狂犬病病毒).

  16. Mulheres ciganas, criminalidade e adaptação ao meio prisional

    Directory of Open Access Journals (Sweden)

    Nuno Segurado

    2014-01-01

    Full Text Available Through a study of Gypsy woman inmates at the Prison of Tires, to comply effective feather, we tried to understand the type of crime associated and sought to know how the process of adaptation to the prison environment is. The methodology used is qualitative and quantitative, with content analysis of judicial decisions and the individual process of the Gypsy woman inmates, of the statistics available in the Prison Information System and the Prison records and some interviews. The overall results point to the practice of crime by economic problems and against property not linked a criminal organization.

  17. A chromatin insulator driving three-dimensional Polycomb response element (PRE) contacts and Polycomb association with the chromatin fiber

    DEFF Research Database (Denmark)

    Comet, Itys; Schuettengruber, Bernd; Sexton, Tom;

    2011-01-01

    to insulate genes from regulatory elements or to take part in long-distance interactions. Using a high-resolution chromatin conformation capture (H3C) method, we show that the Drosophila gypsy insulator behaves as a conformational chromatin border that is able to prohibit contacts between a Polycomb response...... element (PRE) and a distal promoter. On the other hand, two spaced gypsy elements form a chromatin loop that is able to bring an upstream PRE in contact with a downstream gene to mediate its repression. Chromatin immunoprecipitation (ChIP) profiles of the Polycomb protein and its associated H3K27me3...

  18. Potential impact of stress activated retrotransposons on genome evolution in a marine diatom

    Directory of Open Access Journals (Sweden)

    Vardi Assaf

    2009-12-01

    Full Text Available Abstract Background Transposable elements (TEs are mobile DNA sequences present in the genomes of most organisms. They have been extensively studied in animals, fungi, and plants, and have been shown to have important functions in genome dynamics and species evolution. Recent genomic data can now enlarge the identification and study of TEs to other branches of the eukaryotic tree of life. Diatoms, which belong to the heterokont group, are unicellular eukaryotic algae responsible for around 40% of marine primary productivity. The genomes of a centric diatom, Thalassiosira pseudonana, and a pennate diatom, Phaeodactylum tricornutum, that likely diverged around 90 Mya, have recently become available. Results In the present work, we establish that LTR retrotransposons (LTR-RTs are the most abundant TEs inhabiting these genomes, with a much higher presence in the P. tricornutum genome. We show that the LTR-RTs found in diatoms form two new phylogenetic lineages that appear to be diatom specific and are also found in environmental samples taken from different oceans. Comparative expression analysis in P. tricornutum cells cultured under 16 different conditions demonstrate high levels of transcriptional activity of LTR retrotransposons in response to nitrate limitation and upon exposure to diatom-derived reactive aldehydes, which are known to induce stress responses and cell death. Regulatory aspects of P. tricornutum retrotransposon transcription also include the occurrence of nitrate limitation sensitive cis-regulatory components within LTR elements and cytosine methylation dynamics. Differential insertion patterns in different P. tricornutum accessions isolated from around the world infer the role of LTR-RTs in generating intraspecific genetic variability. Conclusion Based on these findings we propose that LTR-RTs may have been important for promoting genome rearrangements in diatoms.

  19. Activation of the Long Terminal Repeat of Human Endogenous Retrovirus K by Melanoma-Specific Transcription Factor MITF-M

    Directory of Open Access Journals (Sweden)

    Iyoko Katoh

    2011-11-01

    Full Text Available The human and Old World primate genomes possess conserved endogenous retrovirus sequences that have been implicated in evolution, reproduction, and carcinogenesis. Human endogenous retrovirus (HERV-K with 5′LTR-gag-pro-pol-env-rec/np9-3′LTR sequences represents the newest retrovirus family that integrated into the human genome 1 to 5 million years ago. Although a high-level expression of HERV-K in melanomas, breast cancers, and terato-carcinomas has been demonstrated, the mechanism of the lineage-specific activation of the long terminal repeat (LTR remains obscure. We studied chromosomal HERV-K expression in MeWo melanoma cells in comparison with the basal expression in human embryonic kidney 293 (HEK293 cells. Cloned LTR of HERV-K (HML-2.HOM was also characterized by mutation and transactivation experiments. We detected multiple transcriptional initiator (Inr sites in the LTR by rapid amplification of complementary DNA ends (5′ RACE. HEK293 and MeWo showed different Inr usage. The most potent Inr was associated with a TATA box and three binding motifs of microphthalmia-associated transcription factor (MITF. Both chromosomal HERV-K expression and the cloned LTR function were strongly activated in HEK293 by transfection with MITF-M, a melanocyte/melanoma–specific isoform of MITF. Coexpression of MITF and the HERV-K core antigen was detected in retinal pigmented epithelium by an immunofluorescence analysis. Although malignant melanoma lines MeWo, G361, and SK-MEL-28 showed enhanced HERV-K transcription compared with normal melanocytes, the level of MITF-M messenger RNA persisted from normal to transformed melanocytes. Thus, MITF-M may be a prerequisite for the pigmented cell lineage–specific function of HERV-K LTR, leading to the high-level expression in malignant melanomas.

  20. Structural Basis for Specific Binding of Human MPP8 Chromodomain to Histone H3 Methylated at Lysine 9

    Energy Technology Data Exchange (ETDEWEB)

    Li, Jing; Li, Zhihong; Ruan, Jianbin; Xu, Chao; Tong, Yufeng; Pan, Patricia W.; Tempel, Wolfram; Crombet, Lissete; Min, Jinrong; Zang, Jianye (Toronto); (Chinese Aca. Sci.)

    2012-02-27

    M-phase phosphoprotein 8 (MPP8) was initially identified to be a component of the RanBPM-containing large protein complex, and has recently been shown to bind to methylated H3K9 both in vivo and in vitro. MPP8 binding to methylated H3K9 is suggested to recruit the H3K9 methyltransferases GLP and ESET, and DNA methyltransferase 3A to the promoter of the E-cadherin gene, mediating the E-cadherin gene silencing and promote tumor cell motility and invasion. MPP8 contains a chromodomain in its N-terminus, which is used to bind the methylated H3K9. Here, we reported the crystal structures of human MPP8 chromodomain alone and in complex with the trimethylated histone H3K9 peptide (residue 1-15). The complex structure unveils that the human MPP8 chromodomain binds methylated H3K9 through a conserved recognition mechanism, which was also observed in Drosophila HP1, a chromodomain containing protein that binds to methylated H3K9 as well. The structure also reveals that the human MPP8 chromodomain forms homodimer, which is mediated via an unexpected domain swapping interaction through two {beta} strands from the two protomer subunits. Our findings reveal the molecular mechanism of selective binding of human MPP8 chromodomain to methylated histone H3K9. The observation of human MPP8 chromodomain in both solution and crystal lattice may provide clues to study MPP8-mediated gene regulation furthermore.

  1. Structural basis for specific binding of human MPP8 chromodomain to histone H3 methylated at lysine 9.

    Directory of Open Access Journals (Sweden)

    Jing Li

    Full Text Available BACKGROUND: M-phase phosphoprotein 8 (MPP8 was initially identified to be a component of the RanBPM-containing large protein complex, and has recently been shown to bind to methylated H3K9 both in vivo and in vitro. MPP8 binding to methylated H3K9 is suggested to recruit the H3K9 methyltransferases GLP and ESET, and DNA methyltransferase 3A to the promoter of the E-cadherin gene, mediating the E-cadherin gene silencing and promote tumor cell motility and invasion. MPP8 contains a chromodomain in its N-terminus, which is used to bind the methylated H3K9. METHODOLOGY/PRINCIPAL FINDINGS: Here, we reported the crystal structures of human MPP8 chromodomain alone and in complex with the trimethylated histone H3K9 peptide (residue 1-15. The complex structure unveils that the human MPP8 chromodomain binds methylated H3K9 through a conserved recognition mechanism, which was also observed in Drosophila HP1, a chromodomain containing protein that binds to methylated H3K9 as well. The structure also reveals that the human MPP8 chromodomain forms homodimer, which is mediated via an unexpected domain swapping interaction through two β strands from the two protomer subunits. CONCLUSIONS/SIGNIFICANCE: Our findings reveal the molecular mechanism of selective binding of human MPP8 chromodomain to methylated histone H3K9. The observation of human MPP8 chromodomain in both solution and crystal lattice may provide clues to study MPP8-mediated gene regulation furthermore.

  2. Mediator coordinates PIC assembly with recruitment of CHD1.

    Science.gov (United States)

    Lin, Justin J; Lehmann, Lynn W; Bonora, Giancarlo; Sridharan, Rupa; Vashisht, Ajay A; Tran, Nancy; Plath, Kathrin; Wohlschlegel, James A; Carey, Michael

    2011-10-15

    Murine Chd1 (chromodomain helicase DNA-binding protein 1), a chromodomain-containing chromatin remodeling protein, is necessary for embryonic stem (ES) cell pluripotency. Chd1 binds to nucleosomes trimethylated at histone 3 Lys 4 (H3K4me3) near the beginning of active genes but not to bivalent domains also containing H3K27me3. To address the mechanism of this specificity, we reproduced H3K4me3- and CHD1-stimulated gene activation in HeLa extracts. Multidimensional protein identification technology (MuDPIT) and immunoblot analyses of purified preinitiation complexes (PICs) revealed the recruitment of CHD1 to naive chromatin but enhancement on H3K4me3 chromatin. Studies in depleted extracts showed that the Mediator coactivator complex, which controls PIC assembly, is also necessary for CHD1 recruitment. MuDPIT analyses of CHD1-associated proteins support the recruitment data and reveal numerous components of the PIC, including Mediator. In vivo, CHD1 and Mediator are recruited to an inducible gene, and genome-wide binding of the two proteins correlates well with active gene transcription in mouse ES cells. Finally, coimmunoprecipitation of CHD1 and Mediator from cell extracts can be ablated by shRNA knockdown of a specific Mediator subunit. Our data support a model in which the Mediator coordinates PIC assembly along with the recruitment of CHD1. The combined action of the PIC and H3K4me3 provides specificity in targeting CHD1 to active genes.

  3. Human Immunodeficiency Virus type 1 in seronegative infants born to HIV-1-infected mothers

    Directory of Open Access Journals (Sweden)

    G Reyes-Terán

    2006-06-01

    Full Text Available Abstract Background Some individuals repeatedly exposed to Human Immunodeficiency Virus do not seroconvert and are resistant to HIV infection. Here, in a pediatric cohort of HIV seronegative infants born of HIV-infected mothers, we have studied eight non-breastfed children in whom viral DNA was detected in their PBMC. Our objective was to assess whether silent infection in these children can be explained by the presence of integrated viral DNA. Methods The presence of viral DNA was corroborated by nested PCR with primers for gag and the nef/LTR regions of HIV-1. Integration of HIV DNA into the host genome was assessed by an Alu-LTR PCR. Amplicons were sequenced and phylogenetic analyzes were done. Results HIV-1 DNA was detected in the earliest available PBMC sample from all eight infants, and two of them tested positive for HIV DNA at 2 years of age. Nested PCR resulted in the amplification of gag, nef/LTR and Alu-LTR fragments, which demostrated that HIV-1 DNA was integrated in the host cell genome. Each individual has a characteristic sequence pattern and is different from the LTR sequence of HXB2 prototype virus and other Mexican isolates. Conclusion HIV-1 DNA was observed in PBMC from HIV exposed seronegative children in this pediatric cohort.

  4. Retroviral safety: analyses of phylogeny, prevalence and polymorphisms of porcine endogenous retroviruses.

    Science.gov (United States)

    Niebert, Marcus; Kurth, Reinhard; Tönjes, Ralf R

    2003-01-01

    Porcine endogenous retroviruses (PERV) are discussed as putative infectious agents in xenotransplantation (XTx). PERV classes A, B, and C harboring different envelope proteins and two types of long terminal repeat (LTR) structures exist. One type of LTR contains a distinct repeat structure in U3, while the other is repeat-less and confers poor transcriptional activity. As the different LTR structures were found to be distributed unequally among the proviruses, we were interested in determining which LTR is the ancestor. Since replication-competent PERV can still be found today suggesting an evolutionary recent origin, we investigated the distribution and prevalence of six well-characterized and chromosomally assigned PERV in individuals of five different pig (Suidae, Sus scrofa) subspecies. Our studies revealed a heterogenous distribution of replication-competent PERV among individuals as well as among subspecies. The age of PERV was calculated to be 7.6 x 10(6) years, whereby the repeat-less LTR type evolved approximately 3.4 x 10(6) years ago being the phylogenetically younger structure. The age correlates with the time of separation between pigs and their closest relatives, american-borne peccaries (Tayassuidae, Pecari tajacu), 7.4 x 10(6) years ago.

  5. Repression of Human T-lymphotropic virus type 1 Long Terminal Repeat sense transcription by Sp1 recruitment to novel Sp1 binding sites

    Science.gov (United States)

    Fauquenoy, Sylvain; Robette, Gwenaëlle; Kula, Anna; Vanhulle, Caroline; Bouchat, Sophie; Delacourt, Nadège; Rodari, Anthony; Marban, Céline; Schwartz, Christian; Burny, Arsène; Rohr, Olivier; Van Driessche, Benoit; Van Lint, Carine

    2017-01-01

    Human T-lymphotropic Virus type 1 (HTLV-1) infection is characterized by viral latency in the majority of infected cells and by the absence of viremia. These features are thought to be due to the repression of viral sense transcription in vivo. Here, our in silico analysis of the HTLV-1 Long Terminal Repeat (LTR) promoter nucleotide sequence revealed, in addition to the four Sp1 binding sites previously identified, the presence of two additional potential Sp1 sites within the R region. We demonstrated that the Sp1 and Sp3 transcription factors bound in vitro to these two sites and compared the binding affinity for Sp1 of all six different HTLV-1 Sp1 sites. By chromatin immunoprecipitation experiments, we showed Sp1 recruitment in vivo to the newly identified Sp1 sites. We demonstrated in the nucleosomal context of an episomal reporter vector that the Sp1 sites interfered with both the sense and antisense LTR promoter activities. Interestingly, the Sp1 sites exhibited together a repressor effect on the LTR sense transcriptional activity but had no effect on the LTR antisense activity. Thus, our results demonstrate the presence of two new functional Sp1 binding sites in the HTLV-1 LTR, which act as negative cis-regulatory elements of sense viral transcription. PMID:28256531

  6. Comparative genomic paleontology across plant kingdom reveals the dynamics of TE-driven genome evolution.

    Science.gov (United States)

    El Baidouri, Moaine; Panaud, Olivier

    2013-01-01

    Long terminal repeat-retrotransposons (LTR-RTs) are the most abundant class of transposable elements (TEs) in plants. They strongly impact the structure, function, and evolution of their host genome, and, in particular, their role in genome size variation has been clearly established. However, the dynamics of the process through which LTR-RTs have differentially shaped plant genomes is still poorly understood because of a lack of comparative studies. Using a new robust and automated family classification procedure, we exhaustively characterized the LTR-RTs in eight plant genomes for which a high-quality sequence is available (i.e., Arabidopsis thaliana, A. lyrata, grapevine, soybean, rice, Brachypodium dystachion, sorghum, and maize). This allowed us to perform a comparative genome-wide study of the retrotranspositional landscape in these eight plant lineages from both monocots and dicots. We show that retrotransposition has recurrently occurred in all plant genomes investigated, regardless their size, and through bursts, rather than a continuous process. Moreover, in each genome, only one or few LTR-RT families have been active in the recent past, and the difference in genome size among the species studied could thus mostly be accounted for by the extent of the latest transpositional burst(s). Following these bursts, LTR-RTs are efficiently eliminated from their host genomes through recombination and deletion, but we show that the removal rate is not lineage specific. These new findings lead us to propose a new model of TE-driven genome evolution in plants.

  7. Selective histonedeacetylase inhibitor M344 intervenes in HIV-1 latency through increasing histone acetylation and activation of NF-kappaB.

    Directory of Open Access Journals (Sweden)

    Hao Ying

    Full Text Available BACKGROUND: Histone deacetylase (HDAC inhibitors present an exciting new approach to activate HIV production from latently infected cells to potentially enhance elimination of these cells and achieve a cure. M344, a novel HDAC inhibitor, shows robust activity in a variety of cancer cells and relatively low toxicity compared to trichostatin A (TSA. However, little is known about the effects and action mechanism of M344 in inducing HIV expression in latently infected cells. METHODOLOGY/PRINCIPAL FINDINGS: Using the Jurkat T cell model of HIV latency, we demonstrate that M344 effectively reactivates HIV-1 gene expression in latently infected cells. Moreover, M344-mediated activation of the latent HIV LTR can be strongly inhibited by a NF-κB inhibitor aspirin. We further show that M344 acts by increasing the acetylation of histone H3 and histone H4 at the nucleosome 1 (nuc-1 site of the HIV-1 long terminal repeat (LTR and by inducing NF-κB p65 nuclear translocation and direct RelA DNA binding at the nuc-1 region of the HIV-1 LTR. We also found that M344 synergized with prostratin to activate the HIV-1 LTR promoter in latently infected cells. CONCLUSIONS/SIGNIFICANCE: These results suggest the potential of M344 in anti-latency therapies and an important role for histone modifications and NF-κB transcription factors in regulating HIV-1 LTR gene expression.

  8. Isolation of recombinant field strains of Marek's disease virus integrated with reticuloendotheliosis virus genome fragments

    Institute of Scientific and Technical Information of China (English)

    ZHANG; Zhi; CUI; Zhizhong

    2005-01-01

    Two Marek's disease virus (MDV) field strains were isolated from chickens with tumors independently from Guangdong and Guangxi provinces, and it was confirmed that there were no co-infections with reticuloendotheliosis viruses (REV) in chicken embryo fibroblast cells (CEF) in indirect fluorescence antibody test (IFA) with REV-specific monoclonal antibodies. By dot blot hybridization and PCR of genomic DNA of MDV-infected CEF, it was indicated that LTR fragments of REV genome were integrated into genome of these two MDV field strains. To amplify and clone the integrated REV LTR with MDV sequence at the junction, 4 primers from REV LTR and 7 primers from MDV genome fragment with REV LTR insertion hot points were synthesized and 28 (4x7) pairs of primers (one from REV and another from MDV for each pair) were used in PCR while using the genomic DNA of both strains as the templates. The sequence data demonstrated that both recombinant field strains contained the same REV LTR inserted into MDV at the identical sites in US fragment of the genomes. From the above, it was speculated that both recombinant field MDVs were originated from a same recombinant virus and spread among chicken flocks in two provinces.

  9. Our dilemma: the self-marginal people.

    Science.gov (United States)

    Ho, T M; Cordovilla, L

    2004-01-01

    Cultural diversity is nowadays a common phenomenon in most developed countries. Its impact is felt in daily life, as well as in health care settings. Hospital del Mar, due to its geographical location, receives some of the 34.7% of immigrants from a varied cultural background. Endeavours are made to promote cultural awareness among staff and to facilitate communication. However, a Spanish Gypsy group, albeit not immigrants, are by large the problematic cultural group. A questionnaire study was conducted to validate the difficulty in treating these Gypsies versus migrant patients. The questionnaire was distributed to different health care professionals in the hospital. The result is not surprising. The problems encountered with the migrant patients are mainly due to language barrier. Concerning these Gypsies who speak fluent Spanish, the problems are by far more extensive. These are often generated by their abiding cultural values, distinctive lifestyle, low educational level and rejection of the shared norms of the majority. Any attempt to encourage adherence to hospital rules are often futile as a result of the gypsies' negative attitudes. Staff have expressed occasional feelings of weariness when dealing with such situations.

  10. Disease: H01203 [KEGG MEDICUS

    Lifescience Database Archive (English)

    Full Text Available T, Bhartiya S Surgical management of glaucoma: evolving paradigms. Indian J Ophthalmol 59 Suppl:S123-30 (2011) ... ...ar phenotypes in the Roma/Gypsy founder population. Eur J Hum Genet 19:326-33 (2011) PMID:21150024 Sharaawy

  11. Toward a global barcode library for Lymantria (Lepidoptera: Lymantriinae) tussock moths of biosecurity concern

    Science.gov (United States)

    Detecting and controlling the movements of invasive species, such as insect pests, relies upon rapid and accurate species identification in order to initiate containment procedures by the appropriate authorities. Gypsy moth Lymantria dispar L., introduced from Europe in the 19th century, has become ...

  12. Representing "The Great Devouring:" Romani Characters in Young Adult Holocaust Literature

    Science.gov (United States)

    Dean-Ruzicka, Rachel

    2014-01-01

    This article discusses the representation of Roma-Sinti ("gypsy") characters in young adult literature about the Holocaust. It analyzes three primary texts: Jerry Spinelli's "Milkweed" (2003), Erich Hackl's "Farewell Sidonia" (1991), and Alexander Ramati's "And the Violins Stopped Playing"…

  13. Moth-Inspired Chemical Plume Tracing on an Autonomous Underwater Vehicle

    Science.gov (United States)

    2005-07-01

    that the AUV sampling is too coarse relative to the spatial and temporal rates of change that can occur in the environment. This paper systematically ...Physiolog. Entomol., vol. 19, pp. 15–29, 1994. [51] J. S. Elkinton and R. T. Cardé, “Appetitive flight behavior of male gypsy moths ( Lepidoptera

  14. 7 CFR 301.45-8 - Attachment and disposition of certificates, limited permits, and outdoor household article...

    Science.gov (United States)

    2010-01-01

    ... 7 Agriculture 5 2010-01-01 2010-01-01 false Attachment and disposition of certificates, limited permits, and outdoor household article documents. 301.45-8 Section 301.45-8 Agriculture Regulations of the... DOMESTIC QUARANTINE NOTICES Gypsy Moth § 301.45-8 Attachment and disposition of certificates,...

  15. Travellers and Home Education: Safe Spaces and Inequality

    Science.gov (United States)

    D'Arcy, Kate

    2014-01-01

    Elective home education (EHE) is a legal alternative to school in England but the statutory requirements for provision are remarkably vague. This book explores the use of EHE by Gypsy and Traveller families. The accounts of their experiences and their views about education spaces reveal the racism and discrimination their children encounter in…

  16. 78 FR 34550 - Airworthiness Directives; Rolls-Royce plc Turbojet Engines

    Science.gov (United States)

    2013-06-10

    ...-44-AD; Amendment 39-17473; AD 2013-11-13] RIN 2120-AA64 Airworthiness Directives; Rolls-Royce plc... adopting a new airworthiness directive (AD) for all Rolls-Royce plc (RR) Viper Mk. 601-22 turbojet engines...-Royce plc, P.O. Box 3, Gypsy Patch Lane, Filton, Bristol, BS347QE, United Kingdom; phone: 011-44-...

  17. Velocity dispersion: A tool for characterizing reservoir rocks

    Science.gov (United States)

    Brown, R.L.; Seifert, D.

    1997-01-01

    Apparent discrepancies between velocity measurements made with different frequencies in a formation at the Gypsy test site are explained in terms of elastic scattering and intrinsic attenuation. The elastic scattering component of the dispersion (38%) in a marine interval above the Gypsy sandstone is estimated via simple models constructed from well log information. Any dispersion above the predicted value for elastic scattering in this interval is assigned to intrinsic attenuation (62%). Using the vertical measurements in the well, the marine interval directly above the Gypsy sandstone has an estimated intrinsic Q1 = 51 and an effective Q because of the scattering of Qsc = 85. The total Q of the combined mechanisms is 32. The dispersion of the vertical measurements through the heterogeneous sands and shales of the Gypsy formation can be explained using an intrinsic QI = 30 and neglecting the effects of scattering. The horizontal observations require a more detailed modeling effort to unravel the relative roles of path and volume effects, elastic scattering, attenuation, and intrinsic anisotropy. Thin layers barely resolvable on the sonic logs play a significant role in modifying the crosswell response. Potentially, the dispersion can be a key to mapping reservoir properties using crosswell and surface seismic data.

  18. Salapärane mustlashobune / Ingrid Randlaht

    Index Scriptorium Estoniae

    Randlaht, Ingrid

    2011-01-01

    Ristandhobustest, ametliku nimega Irish cob (iiri cob), ingliskeelses maailmas valdavalt Gypsy Horse ehk mustlashobusena tuntud ning Mandri-Euroopas peremeeste järgi tinkeriteks kutsutavatest hobustest, samuti Iirimaa kuulsast Ballinasloe hobulaadast, kus müüakse tinkereid, ning Mätta turismitalust Lääne-Virumaal, kus on suurim tinkerite kari Eestis

  19. Strategic Appraisal of Hungary

    Science.gov (United States)

    1992-04-13

    Hungarian " skinheads " gather in groups to provoke then beat Gypsies and Arabs. Because the size of these neo-fascist groups and " skinheads " keeps growing...will be a target country for drug-sellers. The same relates to terrorist activity, neo-Nazism and " skinhead " activity. 41 APPENDIX I STRATEGY

  20. Congenital cataract facial dysmorphism neuropathy syndrome: a clinically recognizable entity.

    NARCIS (Netherlands)

    Shabo, G.; Scheffer, H.; Cruysberg, J.R.M.; Lammens, M.M.Y.; Pasman, J.W.; Spruit, M.; Willemsen, M.A.A.P.

    2005-01-01

    Congenital cataracts facial dysmorphism neuropathy syndrome is a recently delineated autosomal recessive condition exclusively found in the Gypsy population. Congenital cataracts facial dysmorphism neuropathy syndrome is caused by a homozygous mutation in the CTDP1 gene, leading to disruption of the

  1. Highlights of forest pest conditions in the maritimes at the end of July, 1993. Technical note No. 286. Annual publication

    Energy Technology Data Exchange (ETDEWEB)

    Hurley, J.E.

    1993-01-01

    This note describes forest pest conditions in the Maritimes at the end of July, 1993. It discusses diseases and pests found including forest tent caterpiller, gypsy moth, fall webworm, spruce budworm, and wind damage. Others include eastern blackheaded budworm, elm leafroller, alder flea beetle, birch leafminers, oak olethreutid leafroller, yellowheaded spruce sawfly, and spruce spider mite.

  2. A Hidden Minority Becomes Visible: Romani Refugee Children in the Schools.

    Science.gov (United States)

    Tamas, Judit

    2001-01-01

    Discusses educational concerns of Roma, or Gypsy, children in Canada. Provides background information on this minority group and discusses Roma attitudes toward education and Romani children's experiences in Eastern European schools. Provides suggestions for welcoming Romani children into new schools, including developing children's first and…

  3. Learning through the Body

    Science.gov (United States)

    Freiler, Tammy J.

    2008-01-01

    In the tragic aftermath of the December 2004 tsunami off the coast of Thailand, a group of nomads known as the Moken village sea gypsies were featured in an investigative report for their high rate of survival along with the animal population (Simon, 2005). In seeking to discover why this particular group of people survived when so many others had…

  4. Matriarchal village.

    Science.gov (United States)

    Siegel, T S

    1999-01-01

    SUMMARY This story of a gypsy-dyke first experiencing polyamory is set in the 1970s in an Oregon college town, where radical feminists considered non-monogamy an important way to strengthen lesbian tribal bonds. Personal struggles with jealousy and community support for rejecting coupleism are captured in this piece.

  5. Stereotypes and Beliefs about Different Ethnic Groups in Spain: A Study with Spanish and Latin American Children Living in Madrid

    Science.gov (United States)

    Enesco, Ileana; Navarro, Alejandra; Paradela, Isabel; Guerrero, Silvia

    2005-01-01

    96 Spanish and Latin American children from 3 grades in Madrid reported their knowledge of positive and negative stereotypes regarding Spaniards, Gypsies, Latin American and Chinese people. Their personal beliefs about these four ethnic groups were also assessed. Stereotypes about Spaniards were perceived as overwhelmingly positive and least…

  6. From H{sub 2} to cryogenic H masers to HiT{sub c} superconductors: An unlikely but rewarding path

    Energy Technology Data Exchange (ETDEWEB)

    Hardy, Walter N

    2003-05-15

    A selection of seemingly unrelated experiments on solid molecular hydrogen, cryogenic atomic hydrogen and high temperature superconductors are revisited, with the object of showing how one followed from the other. Along the way, the advantages (and disadvantages) of being a scientific gypsy will be noted.

  7. Context differences reveal insulator and activator functions of a Su(Hw binding region.

    Directory of Open Access Journals (Sweden)

    Alexey A Soshnev

    Full Text Available Insulators are DNA elements that divide chromosomes into independent transcriptional domains. The Drosophila genome contains hundreds of binding sites for the Suppressor of Hairy-wing [Su(Hw] insulator protein, corresponding to locations of the retroviral gypsy insulator and non-gypsy binding regions (BRs. The first non-gypsy BR identified, 1A-2, resides in cytological region 1A. Using a quantitative transgene system, we show that 1A-2 is a composite insulator containing enhancer blocking and facilitator elements. We discovered that 1A-2 separates the yellow (y gene from a previously unannotated, non-coding RNA gene, named yar for y-achaete (ac intergenic RNA. The role of 1A-2 was elucidated using homologous recombination to excise these sequences from the natural location, representing the first deletion of any Su(Hw BR in the genome. Loss of 1A-2 reduced yar RNA accumulation, without affecting mRNA levels from the neighboring y and ac genes. These data indicate that within the 1A region, 1A-2 acts an activator of yar transcription. Taken together, these studies reveal that the properties of 1A-2 are context-dependent, as this element has both insulator and enhancer activities. These findings imply that the function of non-gypsy Su(Hw BRs depends on the genomic environment, predicting that Su(Hw BRs represent a diverse collection of genomic regulatory elements.

  8. Domesticated DNA transposon proteins mediate retrotransposon control

    Institute of Scientific and Technical Information of China (English)

    Kathryn A O'Donnell; Jef D Boeke

    2008-01-01

    @@ The Schizosaccharomyces pontbe genome, like those of many eukaryotes, contains a number of retrotransposable repeat sequences. The pombe elements, termed Tfl (transposon of fission yeast 1) and Tf2 possess long terminal repeats (LTRs) and belong to the gypsy family of retrotransposons [1].

  9. Beyond Civilization: Humanity’s Next Great Adventure.

    Directory of Open Access Journals (Sweden)

    Andrea F. Betts

    2010-05-01

    Full Text Available What do a 200-pound gorilla, the Olmec Empire, and a gypsy have in common? Well, if it were not for the works of Daniel Quinn, that query might sound more like the beginnings of a bad joke than a reference to a body of work.

  10. Protecting the Home and Adequate Housing - Living in a Caravan or Trailer as a Human Right

    NARCIS (Netherlands)

    Donders, Y.

    2016-01-01

    Many Roma, gypsies and travellers live in caravans or trailers, sometimes in together trailer parks or camps. This article analyses how this specific lifestyle connected to their housing is protected under the various regimes and provisions of international human rights law. Home and adequate housin

  11. Pluriversalizing Education

    DEFF Research Database (Denmark)

    Tom, Miye Nadya; Suárez-Krabbe, Julia; Caballero Castro, Trinidad

    2016-01-01

    media in the urban Native American community of San Francisco, USA, rap music and social intervention in Lisbon, Portugal, and efforts to standardize education among Romani/Gypsy communities in Córdoba, Spain. When studied together, these initiatives also point to the connection between...

  12. Educating Nomads for Self-Actualization and Development. Literacy Lessons.

    Science.gov (United States)

    Ezeomah, Chimah

    Nomadism is a worldwide phenomenon and its practitioners fall into three categories: (1) hunter/food gatherers, such as the Hadzabe in the United Republic of Tanzania; (2) itinerant workers, including the gypsies in North America; and (3) pastoralists, such as the Masai and Shuaw Arabs in Africa, the Sami in Finland, Norway, and Sweden, and the…

  13. 7 CFR 319.77-2 - Regulated articles.

    Science.gov (United States)

    2010-01-01

    ... 7 Agriculture 5 2010-01-01 2010-01-01 false Regulated articles. 319.77-2 Section 319.77-2....77-2 Regulated articles. In order to prevent the spread of gypsy moth from Canada into noninfested... section are designated as regulated articles. Regulated articles may be imported into the United...

  14. 7 CFR 301.45-7 - Assembly and inspection of regulated articles and outdoor household articles.

    Science.gov (United States)

    2010-01-01

    ... 7 Agriculture 5 2010-01-01 2010-01-01 false Assembly and inspection of regulated articles and outdoor household articles. 301.45-7 Section 301.45-7 Agriculture Regulations of the Department of... QUARANTINE NOTICES Gypsy Moth § 301.45-7 Assembly and inspection of regulated articles and outdoor...

  15. Teacher Training in Roma Education in Greece: Intercultural and Critical Educational Necessities

    Science.gov (United States)

    Georgiadis, Fokion; Zisimos, Apostolos

    2012-01-01

    This paper first outlines briefly the present status and position of the Roma/Gypsies in the Greek context while it gives a review of education policy and provision. Secondly, it indicates that Greek primary teachers lack adequate preparedness for the challenges accompanying contemporary educational multiculturalism and social justice issues. The…

  16. Lessons for Life: Roma Children, Communal Practices, and the Global Marketplace

    Science.gov (United States)

    Christianakis, Mary

    2010-01-01

    The Roma, also known as gypsies or "tsinganoi," are amongst the oldest ethnic minorities in Europe. Nonetheless, they have been one of the most universally marginalized groups across all of the European nations. Their marginalization is evident in how Roma children have been treated in schools. Until recently, most nations have only…

  17. Raising Roma Educational Participation and Achievement: Collaborative Relationships, Transformative Change, and a Social Europe

    Science.gov (United States)

    Ryder, Andrew Richard

    2015-01-01

    The paper gives an overview of Roma, Gypsy and Traveller (RGT) educational exclusion in the European Union and seeks to provide insights into good practice through case studies focusing on Bulgaria and the UK. The paper makes a case for the promotion of collaborative relationships, where RGT communities are active partners in developing curricula…

  18. Exploring Attitude Transformation: A Grounded Theory Study of Romanian Teachers of Roma Students

    Science.gov (United States)

    Jones, Laura Estella

    2016-01-01

    The purpose of this systematic grounded theory study was to explore the process of change in teacher attitudes toward including Roma ("Gypsy") students in non-segregated schools in Romania. The theories guiding this study included Mezirow's (1991, 2000) theory of transformation, Gay's (2002, 2013) theory of culturally responsive…

  19. Reclaiming Roma Students in Hungary

    Science.gov (United States)

    Gruber, Andrea

    2012-01-01

    For most, being served in a restaurant, treated nicely at a job interview, smiled at in the street, or being able to work is nothing out of the ordinary. Sadly, it is not the case for many. Especially for those who are poor. Especially for those who have little education. Especially for those who are Roma (or in other words Gypsy) living in…

  20. Poverty and Ethnicity: A Cross-Country Study of Roma Poverty in Central Europe. World Bank Technical Paper.

    Science.gov (United States)

    Revenga, Ana; Ringold, Dena; Tracy, William Martin

    Roma, or "gypsies," are the main poverty risk group in many countries of central and eastern Europe. Living standards for the Roma have deteriorated more severely during the region's transition to a market economy than they have for other population groups, and Roma have been poorly positioned to take advantage of emerging economic and…

  1. Enhancement of biological control agents for use against forest insect pests and diseases through biotechnology

    Science.gov (United States)

    Slavicek, James M.

    1991-01-01

    Research and development efforts in our research group are focused on the generation of more efficacious biological control agents through the techniques of biotechnology for use against forest insect pests and diseases. Effective biological controls for the gypsy moth and for tree fungal wilt pathogens are under development. The successful use of Gypchek, a formulation of the Lymantria dispar nuclear polyhedrosis virus (LdNPV), in gypsy moth control programs has generated considerable interest in that agent. As a consequence of its specificity, LdPNV has negligible adverse ecological impacts compared to most gypsy moth control agents. However, LdNPV is not competitive with other control agents in terms of cost and efficacy. We are investigating several parameters of LdNPV replication and polyhedra production in order to enhance viral potency and efficacy thus mitigating the current disadvantages of LdNPV for gypsy moth control, and have identified LdNPV variants that will facilitate these efforts. Tree endophytic bacteria that synthesize antifungal compounds were identified and an antibiotic compound from one of these bacteria was characterized. The feasibility of developing tree endophytes as biological control agents for tree vascular fungal pathogens is being investigated.

  2. The effects of 5-fluorouracil and doxorubicin on expression of human immunodeficiency virus type 1 long terminal repeat

    Energy Technology Data Exchange (ETDEWEB)

    Panozzo, J.; Akan, E. [Argonne National Lab., IL (United States); Griffiths, T.D. [Northern Illinois Univ., De Kalb, IL (United States). Dept. of Biological Sciences; Woloschak, G.E. [Argonne National Lab., IL (United States)

    1996-03-01

    Previous work by many groups has documented induction of the HIV-LTR following exposure of cells to ultraviolet light and other DNA damaging agents. Our experiments set out to determine the relative activation or repression of the HIV-LTR in response to two classes of chemotherapeutic agents: Doxorubicin is a DNA-damage inducing agent, and 5-fluorouracil has an antimetabolic mode of action. Using HeLa cells stably transfected with a construct in which HIV-LTR drives expression of the chloramphenicol acetyl transferase reporter gene, we demonstrated an up to 10-fold induction following doxorubicin treatment in 24 h post-treatment. This induction was repressed by treatment with salicylic acid, suggesting a role for prostaglandin/cyclo-oxygenase pathways and/or NFKB in the inductive response. Induction by 5-fluorouracil, in contrast, was more modest (two-fold at most) though it was consistently elevated over controls.

  3. Idefix insulator activity can be modulated by nearby regulatory elements.

    Science.gov (United States)

    Brasset, E; Bantignies, F; Court, F; Cheresiz, S; Conte, C; Vaury, C

    2007-01-01

    Insulators play important roles in controlling gene activity and maintaining regulatory independence between neighbouring genes. In this article, we show that the enhancer-blocking activity of the insulator present within the LTR retrotransposon Idefix can be abolished if two copies of the region containing the insulator--specifically, the long terminal repeat (LTR)--are fused to the retrotransposon's 5' untranslated region (5' UTR). The presence of this combination of two [LTR-5' UTR] modules is a prerequisite for the loss of enhancer-blocking activity. We further show that the 5' UTR causes flanking genomic sequences to be displaced to the nuclear periphery, which is not observed when two insulators are present by themselves. This study thus provides a functional link between insulators and independent genomic modules, which may cooperate to allow the specific regulation of defined genomic loci via nuclear repositioning. It further illustrates the complexity of genomic regulation within a chromatic environment with multiple functional elements.

  4. Silencing of human T-cell leukemia virus type I gene transcription by epigenetic mechanisms

    Directory of Open Access Journals (Sweden)

    Mueller Nancy

    2005-10-01

    Full Text Available Abstract Background Human T-cell leukemia virus type I (HTLV-I causes adult T-cell leukemia (ATL after a long latent period. Among accessory genes encoded by HTLV-I, the tax gene is thought to play a central role in oncogenesis. However, Tax expression is disrupted by several mechanims including genetic changes of the tax gene, deletion/hypermethylation of 5'-LTR. To clarify the role of epigenetic changes, we analyzed DNA methylation and histone modification in the whole HTLV-I provirus genome. Results The gag, pol and env genes of HTLV-I provirus were more methylated than pX region, whereas methylation of 5'-LTR was variable and 3'-LTR was not methylated at all. In ATL cell lines, complete DNA methylation of 5'-LTR was associated with transcriptional silencing of viral genes. HTLV-I provirus was more methylated in primary ATL cells than in carrier state, indicating the association with disease progression. In seroconvertors, DNA methylation was already observed in internal sequences of provirus just after seroconversion. Taken together, it is speculated that DNA methylation first occurs in the gag, pol and env regions and then extends in the 5' and 3' directions in vivo, and when 5'-LTR becomes methylated, viral transcription is silenced. Analysis of histone modification in the HTLV-I provirus showed that the methylated provirus was associated with hypoacetylation. However, the tax gene transcript could not be detected in fresh ATL cells regardless of hyperacetylated histone H3 in 5'-LTR. The transcription rapidly recovered after in vitro culture in such ATL cells. Conclusion These results showed that epigenetic changes of provirus facilitated ATL cells to evade host immune system by suppressing viral gene transcription. In addition, this study shows the presence of another reversible mechanism that suppresses the tax gene transcription without DNA methylation and hypoacetylated histone.

  5. Antibiosis functions during interactions of Trichoderma afroharzianum and Trichoderma gamsii with plant pathogenic Rhizoctonia and Pythium.

    Science.gov (United States)

    Zhang, Xinjian; Harvey, Paul R; Stummer, Belinda E; Warren, Rosemary A; Zhang, Guangzhi; Guo, Kai; Li, Jishun; Yang, Hetong

    2015-09-01

    Trichoderma afroharzianum is one of the best characterized Trichoderma species, and strains have been utilized as plant disease suppressive inoculants. In contrast, Trichoderma gamsii has only recently been described, and there is limited knowledge of its disease suppressive efficacies. Comparative studies of changes in gene expression during interactions of these species with their target plant pathogens will provide fundamental information on pathogen antibiosis functions. In the present study, we used complementary DNA amplified fragment length polymorphism (cDNA-AFLP) analysis to investigate changes in transcript profiling of T. afroharzianum strain LTR-2 and T. gamsii strain Tk7a during in vitro interactions with plant pathogenic Rhizoctonia solani and Pythium irregulare. Considerable differences were resolved in the overall expression profiles of strains LTR-2 and Tk7a when challenged with either plant pathogen. In strain LTR-2, previously reported mycoparasitism-related genes such as chitinase, polyketide synthase, and non-ribosomal peptide synthetase were found to be differentially expressed. This was not so for strain Tk7a, with the only previously reported antibiosis-associated genes being small secreted cysteine-rich proteins. Although only one differentially expressed gene was common to both strains LTR-2 and Tk7a, numerous genes reportedly associated with pathogen antibiosis processes were differentially expressed in both strains, including degradative enzymes and membrane transport proteins. A number of novel potential antibiosis-related transcripts were found from strains LTR-2 and Tk7a and remain to be identified. The expression kinetics of 20 Trichoderma (10 from strain LTR-2, 10 from strain Tk7a) transcript-derived fragments (TDFs) were quantified by quantitative reverse transcription PCR (RT-qPCR) at pre- and post-mycelia contact stages of Trichoderma-prey interactions, thereby confirming differential gene expression. Collectively, this research

  6. Exceptional diversity, non-random distribution, and rapid evolution of retroelements in the B73 maize genome.

    Directory of Open Access Journals (Sweden)

    Regina S Baucom

    2009-11-01

    Full Text Available Recent comprehensive sequence analysis of the maize genome now permits detailed discovery and description of all transposable elements (TEs in this complex nuclear environment. Reiteratively optimized structural and homology criteria were used in the computer-assisted search for retroelements, TEs that transpose by reverse transcription of an RNA intermediate, with the final results verified by manual inspection. Retroelements were found to occupy the majority (>75% of the nuclear genome in maize inbred B73. Unprecedented genetic diversity was discovered in the long terminal repeat (LTR retrotransposon class of retroelements, with >400 families (>350 newly discovered contributing >31,000 intact elements. The two other classes of retroelements, SINEs (four families and LINEs (at least 30 families, were observed to contribute 1,991 and approximately 35,000 copies, respectively, or a combined approximately 1% of the B73 nuclear genome. With regard to fully intact elements, median copy numbers for all retroelement families in maize was 2 because >250 LTR retrotransposon families contained only one or two intact members that could be detected in the B73 draft sequence. The majority, perhaps all, of the investigated retroelement families exhibited non-random dispersal across the maize genome, with LINEs, SINEs, and many low-copy-number LTR retrotransposons exhibiting a bias for accumulation in gene-rich regions. In contrast, most (but not all medium- and high-copy-number LTR retrotransposons were found to preferentially accumulate in gene-poor regions like pericentromeric heterochromatin, while a few high-copy-number families exhibited the opposite bias. Regions of the genome with the highest LTR retrotransposon density contained the lowest LTR retrotransposon diversity. These results indicate that the maize genome provides a great number of different niches for the survival and procreation of a great variety of retroelements that have evolved to

  7. Exceptional diversity, non-random distribution, and rapid evolution of retroelements in the B73 maize genome.

    Science.gov (United States)

    Baucom, Regina S; Estill, James C; Chaparro, Cristian; Upshaw, Naadira; Jogi, Ansuya; Deragon, Jean-Marc; Westerman, Richard P; Sanmiguel, Phillip J; Bennetzen, Jeffrey L

    2009-11-01

    Recent comprehensive sequence analysis of the maize genome now permits detailed discovery and description of all transposable elements (TEs) in this complex nuclear environment. Reiteratively optimized structural and homology criteria were used in the computer-assisted search for retroelements, TEs that transpose by reverse transcription of an RNA intermediate, with the final results verified by manual inspection. Retroelements were found to occupy the majority (>75%) of the nuclear genome in maize inbred B73. Unprecedented genetic diversity was discovered in the long terminal repeat (LTR) retrotransposon class of retroelements, with >400 families (>350 newly discovered) contributing >31,000 intact elements. The two other classes of retroelements, SINEs (four families) and LINEs (at least 30 families), were observed to contribute 1,991 and approximately 35,000 copies, respectively, or a combined approximately 1% of the B73 nuclear genome. With regard to fully intact elements, median copy numbers for all retroelement families in maize was 2 because >250 LTR retrotransposon families contained only one or two intact members that could be detected in the B73 draft sequence. The majority, perhaps all, of the investigated retroelement families exhibited non-random dispersal across the maize genome, with LINEs, SINEs, and many low-copy-number LTR retrotransposons exhibiting a bias for accumulation in gene-rich regions. In contrast, most (but not all) medium- and high-copy-number LTR retrotransposons were found to preferentially accumulate in gene-poor regions like pericentromeric heterochromatin, while a few high-copy-number families exhibited the opposite bias. Regions of the genome with the highest LTR retrotransposon density contained the lowest LTR retrotransposon diversity. These results indicate that the maize genome provides a great number of different niches for the survival and procreation of a great variety of retroelements that have evolved to differentially

  8. R region sequences in the long terminal repeat of a murine retrovirus specifically increase expression of unspliced RNAs.

    Science.gov (United States)

    Trubetskoy, A M; Okenquist, S A; Lenz, J

    1999-04-01

    A stem-loop structure at the 5' end of the R region of the long terminal repeat (LTR) of the murine leukemia virus SL3 and other type C mammalian retroviruses is important for maximum levels of expression of a reporter gene under the control of the viral LTR. This element, termed the R region stem-loop (RSL), has a small effect on transcriptional initiation and no effect on RNA polymerase processivity. Its major effect is on posttranscriptional processing of LTR-driven transcripts. Here we tested whether the RSL affected the production of RNAs from a full-length SL3 genome. Mutation of the RSL in the 5' LTR of SL3 reduced the cytoplasmic levels of full-length viral transcripts but not those of spliced, env mRNA transcripts. Thus, the RSL specifically affected the cytoplasmic levels of the unspliced viral RNA. To test further whether the effect was specific for unspliced transcripts, a system was devised in which the expression of a reporter gene under the control of the viral LTR was tested in the presence or absence of an intron. Mutation of the RSL resulted in only about a twofold decline in the level of reporter gene expression when the transcripts contained an intron. However, when the intron was removed, mutation of the RSL reduced expression of the reporter gene about 10- to 60-fold in various cell lines. The secondary structure of the RSL was essential for its activity on the intronless transcript. Thus, the RSL appears to be important for the cytoplasmic accumulation of unspliced viral RNA and unspliced RNA from chimeric transcription units under the control of the viral LTR.

  9. Air Force Roles and Missions: A History

    Science.gov (United States)

    1998-01-01

    Magna Carta ” of an independent air force, providing a formal statement of the equality of air power and land power. It linked the interdependence of...Indianapolis, Ind., Sep. 11, 1925; Ltr, Gen. Mason Patrick to Lt. Col. C. B. Amorous , Feb. 12, 1926. National Archives, RG 18. 57. Maj. Gen. Benjamin D...K112.1- 3. 63. Armstrong and Van Fleet, Naval Avia- tion, pp 62. 64. Ltr, Maj. Gen. Mason Patrick to Lt. Col. C. B. Amorous , New York, NY, Feb. 24, 1926

  10. NCBI nr-aa BLAST: CBRC-DNOV-01-2139 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-DNOV-01-2139 ref|YP_185316.1| hypothetical protein SACOL0425 [Staphylococcus aureus subsp. aureus... COL] ref|YP_493068.1| low temperature requirement protein LtrA [Staphylococcus aureus subsp. aureus... USA300] ref|YP_498924.1| hypothetical protein SAOUHSC_00335 [Staphylococcus aureus subsp. aureus... NCTC 8325] gb|AAW38893.1| hypothetical protein SACOL0425 [Staphylococcus aureus subsp. aureus... COL] gb|ABD20749.1| low temperature requirement protein LtrA [Staphylococcus aureus subsp. aureus

  11. Epstein-Barr virus nuclear antigen 2 transactivates the long terminal repeat of human immunodeficiency virus type 1.

    Science.gov (United States)

    Scala, G; Quinto, I; Ruocco, M R; Mallardo, M; Ambrosino, C; Squitieri, B; Tassone, P; Venuta, S

    1993-05-01

    Human immunodeficiency virus type 1 (HIV-1)-infected subjects show a high incidence of Epstein-Barr virus (EBV) infection. This suggests that EBV may function as a cofactor that affects HIV-1 activation and may play a major role in the progression of AIDS. To test this hypothesis, we generated two EBV-negative human B-cell lines that stably express the EBNA2 gene of EBV. These EBNA2-positive cell lines were transiently transfected with plasmids that carry either the wild type or deletion mutants of the HIV-1 long terminal repeat (LTR) fused to the chloramphenicol acetyltransferase (CAT) gene. There was a consistently higher HIV-1 LTR activation in EBNA2-expressing cells than in control cells, which suggested that EBNA2 proteins could activate the HIV-1 promoter, possibly by inducing nuclear factors binding to HIV-1 cis-regulatory sequences. To test this possibility, we used CAT-based plasmids carrying deletions of the NF-kappa B (pNFA-CAT), Sp1 (pSpA-CAT), or TAR (pTAR-CAT) region of the HIV-1 LTR and retardation assays in which nuclear proteins from EBNA2-expressing cells were challenged with oligonucleotides encompassing the NF-kappa B or Sp1 region of the HIV-1 LTR. We found that both the NF-kappa B and the Sp1 sites of the HIV-1 LTR are necessary for EBNA2 transactivation and that increased expression resulted from the induction of NF-kappa B-like factors. Moreover, experiments with the TAR-deleted pTAR-CAT and with the tat-expressing pAR-TAT plasmids indicated that endogenous Tat-like proteins could participate in EBNA2-mediated activation of the HIV-1 LTR and that EBNA2 proteins can synergize with the viral tat transactivator. Transfection experiments with plasmids expressing the EBNA1, EBNA3, and EBNALP genes did not cause a significant HIV-1 LTR activation. Thus, it appears that among the latent EBV genes tested, EBNA2 was the only EBV gene active on the HIV-1 LTR. The transactivation function of EBNA2 was also observed in the HeLa epithelial cell line

  12. HIV transcription is induced with some forms of cell killing

    Energy Technology Data Exchange (ETDEWEB)

    Woloschak, G.E. [Argonne National Lab., IL (United States); Schreck, S. [Argonne National Lab., IL (United States)][South Carolina Univ., Columbia, SC (United States). Dept. of Chemistry; Panozzo, J. [Loyola Univ. Medical Center, Maywood, IL (United States); Chang-Liu, C.-M. [Argonne National Lab., IL (United States); Libertin, C.R. [Loyola Univ. Medical Center, Maywood, IL (United States)

    1996-11-01

    Using HeLa cells stably transfected with an HIV-LTR-CAT construct`, we demonstrated a peak in CAT induction that occurs in viable (but not necessarily cell-division-competent) cells 24 h following exposure to some cell-killing agents. {Gamma} rays were the only cell-killing agent which did not induce HIV transcription; this can be attributed to the fact that {gamma}-ray-induced apoptotic death requires function p53, which is missing in HeLa cells. For all other agents, HIV-LTR induction was dose-dependent and correlated with the amount of cell killing that occurred in the culture.

  13. Regulating retrotransposon activity through the use of alternative transcription start sites

    DEFF Research Database (Denmark)

    Persson, Jenna; Steglich, Babett; Smialowska, Agata;

    2016-01-01

    a new mechanism of retrotransposon regulation through transcription start site (TSS) selection by altered nucleosome occupancy. We show that Fun30 chromatin remodelers cooperate to maintain a high level of nucleosome occupancy at retrotransposon-flanking long terminal repeat (LTR) elements....... This enforces the use of a downstream TSS and the production of a truncated RNA incapable of reverse transcription and retrotransposition. However, in stressed cells, nucleosome occupancy at LTR elements is reduced, and the TSS shifts to allow for productive transcription. We propose that controlled...

  14. Evidence for the antisense transcription in the proviral R29-127 strain of bovine immunodeficiency virus

    Institute of Scientific and Technical Information of China (English)

    Bin; Liu; Xuechao; Zhao; Wenyuan; Shen; Xiaohong; Kong

    2015-01-01

    <正>Dear Editor,In the late stages of the retroviral life cycle,the transcription of viral pre-m RNA is initiated at the 5′long terminal repeat(5′LTR)and terminated at the 3′LTR;the full-length and spliced viral RNAs are transported out of the nucleus and serve as templates for the translation of viral proteins or alternatively as the full-length viral genome to be packaged into virus particles.Antisense

  15. Herreros y Cantaores: El trabajo de los metales en la génesis del flamenco

    Directory of Open Access Journals (Sweden)

    Cáceres Feria, Rafael

    2013-12-01

    Full Text Available Artists, fans and researchers of flamenco have the widespread idea that gypsy blacksmith´s trades have constituted, from ancient, mythical places where gypsy tradition would have remained pure, and that we even could find there the embryo of what later will be known as flamenco. On the other hand, the gypsy blacksmith’s trades have been associated to a specific and exclusive style of song, called martinetes , which supposedly were performed with the rhythm of the hammering on the anvil. This article dismantles both topics, studies the ambivalent role and status of gypsy blacksmiths, analyses historical sources that deal with that job between gypsies, takes in consideration testimonies that recreate scenes of music in the iron-works, and reviews what we know about martinetes . The text allows understanding the real dimension of the gypsy blacksmiths in Andalusia, and discovers the role that they have played in gestation and development of flamenco .Entre artistas, aficionados y estudiosos del flamenco existe la generalizada idea de que las herrerías gitanas han constituido, desde antiguo, lugares míticos donde se ha conservado pura la tradición calé; incluso que sería allí donde se habría creado el embrión de lo que después será el flamenco. Por otra parte, a las fraguas gitanas se ha asociado un cante propio y exclusivo: los martinetes, supuestamente ejecutados al ritmo del martilleo sobre el yunque. Este artículo desmonta ambos tópicos, y para ello ahonda antropológicamente en el ambivalente rol y estatus de los gitanos herreros; analiza fuentes históricas que se ocupan del trabajo de los metales entre los gitanos, así como testimonios literarios que recrean escenas de música en las herrerías, y revisa lo que conocemos sobre los martinetes. El texto permite comprender la verdadera dimensión de los gitanos herreros en Andalucía, y en qué medida han jugado estos un papel en la gestación y desarrollo del flamenco.

  16. Impact of late-to-refill reminder calls on medication adherence in the Medicare Part D population: evaluation of a randomized controlled study

    Science.gov (United States)

    Taitel, Michael S; Mu, Ying; Gooptu, Angshuman; Lou, Youbei

    2017-01-01

    Objectives This study evaluates a nationwide pharmacy chain’s late-to-refill (LTR) reminder program that entails local pharmacists placing reminder calls to Medicare Part D patients. Methods We conducted a randomized controlled study among 735,218 patients who exhibited nonadherent behavior by not refilling a maintenance medication 3 days from an expected refill date. Patients were randomly assigned to an intervention group who received LTR reminder calls or to a control group. We used Walgreens pharmaceutical claims data from 2015 to estimate the impact of LTR calls on short-term and annual adherence. Results The initial refill rate within the first 14 days of the expected refill date significantly increased in the intervention group by 22.8% (6.09 percentage points) compared to the control group (Pstudy suggest that LTR reminder calls increased adherence for Medicare Part D patients who are late in refilling their medications and therefore have the potential to reduce their risk for hospitalization and health care costs. Additionally, the intervention increased the number of patients with PDC ≥80% by ~3%, positively impacting Medicare Part D plan quality rating. PMID:28280310

  17. Novel 3′-Processing Integrase Activity Assay by Real-Time PCR for Screening and Identification of HIV-1 Integrase Inhibitors

    Directory of Open Access Journals (Sweden)

    Supachai Sakkhachornphop

    2015-01-01

    Full Text Available The 3′-end processing (3′P of each viral long terminal repeat (LTR during human immunodeficiency virus type-1 (HIV-1 integration is a vital step in the HIV life cycle. Blocking the 3′P using 3′P inhibitor has recently become an attractive strategy for HIV-1 therapeutic intervention. Recently, we have developed a novel real-time PCR based assay for the detection of 3′P activity in vitro. The methodology usually involves biotinylated HIV-1 LTR, HIV-1 integrase (IN, and specific primers and probe. In this novel assay, we designed the HIV-1 LTR substrate based on a sequence with a homology to HIV-1 LTR labeled at its 3′ end with biotin on the sense strand. Two nucleotides at the 3′ end were subsequently removed by IN activity. Only two nucleotides labeled biotin were captured on an avidin-coated tube; therefore, inhibiting the binding of primers and probe results in late signals in the real-time PCR. This novel assay has successfully detected both the 3′P activity of HIV-1 IN and the anti-IN activity by Raltegravir and sodium azide agent. This real-time PCR assay has been shown to be effective and inexpensive for a high-throughput screening of novel IN inhibitors.

  18. Transcriptome analysis of recurrently deregulated genes across multiple cancers identifies new pan-cancer biomarkers

    DEFF Research Database (Denmark)

    Kaczkowski, Bogumil; Tanaka, Yuji; Kawaji, Hideya;

    2016-01-01

    RNAs which are upregulated in cancer, defining promoters which overlap with repetitive elements (especially SINE/Alu and LTR/ERV1 elements) that are often upregulated in cancer. Lastly, we documented for the first time upregulation of multiple copies of the REP522 interspersed repeat in cancer. Overall...

  19. Layers of Self- and Co-Regulation: Teachers Working Collaboratively to Support Adolescents' Self-Regulated Learning through Reading

    Directory of Open Access Journals (Sweden)

    Deborah L. Butler

    2013-01-01

    Full Text Available This paper reports findings from a longitudinal project in which secondary teachers were working collaboratively to support adolescents' self-regulated learning through reading (LTR in subject-area classrooms. We build from prior research to “connect the dots” between teachers' engagement in self- and co-regulated inquiry, associated shifts in classroom practice, and student self-regulation. More specifically, we investigated whether and how teachers working within a community of inquiry were mobilizing research to shape classroom practice and advance student learning. Drawing on evidence from 18 teachers and their respective classrooms, we describe findings related to the following research questions: (1 While engaged in self- and co-regulated inquiry, what types of practices did teachers enact to support LTR in their subject-area classrooms? (2 How did teachers draw on research-based resources to inform practice development? (3 What kinds of practices could be associated with gains in students' self-regulated LTR? In our discussion, we highlight contributions to understanding how teachers can be supported to situate research in authentic classroom environments and about qualities of practices supportive of students' self-regulated LTR. We also identify limitations of this work and important future directions.

  20. Regaining the Moral High Ground on Gitmo...is there a Basis for released Guantanamo Detainees to Receive Reparations?

    Science.gov (United States)

    2009-12-11

    accessed 22 September 2009). 56Judith Resnik , “Opening the Door, Court Stripping: unconscionable or unconst Hamdan v. Rumsfeld, 548 U.S. 557. 58Elsea...http://news.findlaw.com/hdocs/docs/terrorism/powellmccain91406ltr.html (accessed 1 October 2009). Resnik , Judith. “Opening the Door, Court

  1. Derepression of an endogenous long terminal repeat activates the CSF1R proto-oncogene in human lymphoma

    NARCIS (Netherlands)

    Lamprecht, Bjoern; Walter, Korden; Kreher, Stephan; Kumar, Raman; Hummel, Michael; Lenze, Dido; Koechert, Karl; Bouhlel, Mohamed Amine; Richter, Julia; Soler, Eric; Stadhouders, Ralph; Joehrens, Korinna; Wurster, Kathrin D.; Callen, David F.; Harte, Michael F.; Giefing, Maciej; Barlow, Rachael; Stein, Harald; Anagnostopoulos, Ioannis; Janz, Martin; Cockerill, Peter N.; Siebert, Reiner; Doerken, Bernd; Bonifer, Constanze; Mathas, Stephan

    2010-01-01

    Mammalian genomes contain many repetitive elements, including long terminal repeats (LTRs), which have long been suspected to have a role in tumorigenesis. Here we present evidence that aberrant LTR activation contributes to lineage-inappropriate gene expression in transformed human cells and that s

  2. Preventive Medicine in World War II. Volume 3. Personal Health Measures and Immunization

    Science.gov (United States)

    1955-01-01

    content, was heavily infested with weevils, and, because of its low gluten content, it was 31 Ltr, Col P. E. Howe, SGO, to Surg CBI, 11 Mar 44. HD: 720.1...particular hospital and would boycott the others. Since all of the patients were well fed, this situation was absurd, but rapidly became intolerable

  3. The turbulent life of Sirevirus retrotransposons and the evolution of the maize genome: more than ten thousand elements tell the story

    NARCIS (Netherlands)

    Bousios, A.; Kourmpetis, Y.I.A.; Pavlidis, P.; Minga, E.; Tsaftaris, A.; Darzentas, N.

    2012-01-01

    Sireviruses are one of the three genera of Copia long terminal repeat (LTR) retrotransposons, exclusive to and highly abundant in plants, and with a unique, among retrotransposons, genome structure. Yet, perhaps due to the few references to the Sirevirus origin of some families, compounded by the di

  4. Isolation of Ty1-copia-like Retrotransposon Sequences from the Apple Genome by Chromosome Walking Based on Modified SiteFinding-polymerase Chain Reaction

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    Long terminal repeat (LTR) retrotransposons are powerful tools for studying genetic biodiversity,genome evolution, gene mutation, gene cloning and gene expression. The scarcity of retrotransposon sequence information restricts the development of these studies in higher plants. In the present study, 31 reverse transcriptase (RT) genes of Tyl-copia-like retrotransposons were identified from the apple genome by amplifying the RT coding region using degenerate primers. Nineteen RT genes showed extreme heterogeneity in terms of fragment size, base pair composition and open reading frame integrality. Originating from one 266 bp cloned RT gene, a 1966 bp Ty1-copia-like retrotransposon (named Tcrm1), including RT-ribonuclease H-LTR domain sequences, was achieved by chromosome walking based on modified SiteFinding-polymerase chain reaction. The comparison between Tcrm1 and other LTR retrotransposons in gene structure and sequence homology shows that Tcrm1 is the first Ty1-copia-like retrotransposon including an LTR domain in the apple genome. Dot blot analysis revealed that Tcrm1 copy number in the apple was approximately 1×103 copies per haploid genome.

  5. The protein tyrosine kinase Fyn activates transcription from the HIV promoter via activation of NF kappa B-like DNA-binding proteins.

    Science.gov (United States)

    Hohashi, N; Hayashi, T; Fusaki, N; Takeuchi, M; Higurashi, M; Okamoto, T; Semba, K; Yamamoto, T

    1995-11-01

    Protein tyrosine kinase p59fyn (Fyn) associates with the TCR-CD3 complex, which suggests that Fyn plays a significant role in the signal transduction involving TCR complex. In addition to cellular genes, viral promoters such as the HIV long terminal repeat (LTR) are also activated upon T cell activation. To elucidate the functional significance of Fyn in the expression of viral promoters, we transfected a Fyn-expression vector together with a reporter plasmid containing the chloramphenicol acetyltransferase gene driven by HIV LTR into a human T cell line, Jurkat. In this assay, Fyn stimulated the promoter in HIV LTR when the transfected cells were treated with both concanavalin A and PMA as an antigen-mimic stimulation. This activation required the intact SH2 domain of Fyn. Mutational analysis of HIV LTR showed that the NF kappa B binding sites were responsible for this effect. Electrophoretic mobility shift assays and UV cross-linking experiments showed that activation of T cells by anti-CD3 antibody induced four kappa B-binding proteins (50, 60, 65 and 100 kDa) in Fyn-overexpressing cells more efficiently than in the parental cells. Our results suggested that Fyn was able to regulate expression of a subset of genes via kappa B-binding proteins upon T cell activation.

  6. Users, Use, and Usage Statistics

    Science.gov (United States)

    Grogg, Jill E.

    2010-01-01

    For the August/September 2010 issue of "Library Technology Reports" (LTR) published by the American Library Association Techsource division, the author and her colleague, Rachel A. Fleming-May, focused on use and usage, both of electronic resources and use of libraries in general. In this article, the author discusses a few of the findings from an…

  7. c-Myb influences HIV type 1 gene expression and virus production.

    Science.gov (United States)

    Churchill, M J; Ramsay, R G; Rhodes, D I; Deacon, N J

    2001-11-01

    c-Myb is expressed in proliferating T cells. Fifteen c-Myb-binding sites can be identified in the HIV-1 long terminal repeat (LTR), suggesting that c-Myb may regulate HIV-1 gene expression and virus replication. Increasing the cellular levels of c-Myb by transient transfection of CEM cells resulted in a 10- to 20-fold activation of HIV-1 LTR-driven gene expression and mutation of one high-affinity Myb-binding site within the LTR reduced this activation by 60 to 70%. Conversely, inhibition of c-Myb expression in MT-2 cells by treatment with c-myb antisense oligonucleotides decreased HIV-1 replication by 85%, as measured by reverse transcriptase activity and cytopathic effects. The effect of c-myb antisense oligonucleotides on HIV-1 gene expression and virus particle production appeared to be independent of cell proliferation, but dependent on the presence of c-Myb activity mediated through the HIV-1 LTR. These data show that c-myb expression affects HIV-1 replication in CD4(+) T cells.

  8. The nucleotide sequence of the high-leukemogenic murine retrovirus SL3-3 reveals a patch of mink cell focus forming-like sequences upstream of the ecotropic envelope gene. Brief report

    DEFF Research Database (Denmark)

    Lund, Anders Henrik; Pedersen, F S

    1999-01-01

    We report the complete nucleotide sequence of the potent T-lymphomagenic murine retrovirus SL3-3. The non-LTR regions of the virus show 98% sequence identity to the endogenous ecotropic Akv murine leukemia virus. While the region encoding the surface envelope protein is completely identical to th...

  9. Corrosion-Control (CC) Program: Pilot Powder Coating Station Service Test.

    Science.gov (United States)

    1986-03-14

    8282, 1803M, 20 August 1985. 3-5 COMNAVSEASYSCOM Ltr. 9630, Ser . 05M1.14/374, 12 September 1985. 3-6 American Society for Testing and Materials (ASTM...Searchlights Vent Screens Miscellaneous Oil Spill Control Boxes Control Box Totl Cmpoent Poder Coated =68 Total Components Powder Coated =138 HORN (CG30

  10. Connecting with Teachers: The Case for Language Teaching Research in the Social Sciences

    Science.gov (United States)

    Kiely, Richard

    2014-01-01

    Paul Stapleton's assessment of the current state of language teaching research (LTR) raises important issues. However, his proposal that social science research approaches in ELT have failed, and that that they should be replaced by approaches from the biological sciences, is unlikely to connect with the knowledge-building needs of ELT…

  11. Tri-LORE-gy

    DEFF Research Database (Denmark)

    Mun, Terry

    Lotus japonicus is a model legume widely used in the study of plant development, physiology, and host-microbe interactions. The provision of genomic and transcriptomic data, the availability of a large mutant collection generated from saturation mutagenesis by an activated endogenous LTR retrotra...

  12. A super-family of transcriptional activators regulates bacteriophage packaging and lysis in Gram-positive bacteria

    Science.gov (United States)

    Quiles-Puchalt, Nuria; Tormo-Más, María Ángeles; Campoy, Susana; Toledo-Arana, Alejandro; Monedero, Vicente; Lasa, Íñigo; Novick, Richard P.; Christie, Gail E.; Penadés, José R.

    2013-01-01

    The propagation of bacteriophages and other mobile genetic elements requires exploitation of the phage mechanisms involved in virion assembly and DNA packaging. Here, we identified and characterized four different families of phage-encoded proteins that function as activators required for transcription of the late operons (morphogenetic and lysis genes) in a large group of phages infecting Gram-positive bacteria. These regulators constitute a super-family of proteins, here named late transcriptional regulators (Ltr), which share common structural, biochemical and functional characteristics and are unique to this group of phages. They are all small basic proteins, encoded by genes present at the end of the early gene cluster in their respective phage genomes and expressed under cI repressor control. To control expression of the late operon, the Ltr proteins bind to a DNA repeat region situated upstream of the terS gene, activating its transcription. This involves the C-terminal part of the Ltr proteins, which control specificity for the DNA repeat region. Finally, we show that the Ltr proteins are the only phage-encoded proteins required for the activation of the packaging and lysis modules. In summary, we provide evidence that phage packaging and lysis is a conserved mechanism in Siphoviridae infecting a wide variety of Gram-positive bacteria. PMID:23771138

  13. Low-temperature-related growth and photosynthetic performance of alloplasmic tomato (Lycopersicon esculentum Mill.) with chloroplasts from L-hirsutum Humb. & Bonpl.

    NARCIS (Netherlands)

    Dolstra, O; Venema, JH; Groot, PJ; van Hasselt, PR

    2002-01-01

    Growth and photosynthetic performance were analyzed in alloplasmic tomato at a high- (25/17degreesC; HTR) and low-temperature regime (12/6degreesC; LTR) in order to establish the role of cytoplasmic variation on low-temperature tolerance of tomato ( Lycopersicon esculentum Mill.). Four alloplasmic t

  14. Vitamin C increases viral mimicry induced by 5-aza-2'-deoxycytidine

    DEFF Research Database (Denmark)

    Liu, Minmin; Ohtani, Hitoshi; Zhou, Wanding

    2016-01-01

    at LTR regions of ERVs, because vitamin C acts as a cofactor for TET proteins. In addition, TET2 knockout reduces the synergy between the two compounds. Furthermore, we show that many patients with hematological neoplasia are markedly vitamin C deficient. Thus, our data suggest that correction of vitamin...

  15. Channel and Switchbox Routing Using a Greedy Based Channel Algorithm with Outward Scanning Technique.

    Science.gov (United States)

    1988-12-01

    where these subnets belong to the same net but require a connection by a common wire. The thread router is a maze -type of router which does not... runner I* *1~ struct rlist{ char ltr[256]; /* structure for reading data files */ ]list[ 2000]; 136 \\IA K [FILE ?:ma’Kefile for program ROUTE

  16. Dicty_cDB: SFD596 [Dicty_cDB

    Lifescience Database Archive (English)

    Full Text Available d:none) Dictyostelium discoideum LTR-retro... 352 3e-96 AY523538_1( AY523538 |pid:none) Sweet potato feathery...2_1( AY523552 |pid:none) Sweet potato feathery mottle virus... 36 0.72 ( Q10267 ) RecName: Full=Uncharacteri

  17. Use of inactivated E.Coli enterotoxins to enhance respiratory mucosal adjuvanticity during vaccination in swine

    Science.gov (United States)

    In order to augment responses to respiratory vaccines in swine, various adjuvants were intranasally co-administered with an antigen to pigs. Detoxified E. coli enterotoxins LTK63 and LTR72 enhanced mucosal and systemic immunity to the model peptide, exhibiting their efficacy as mucosal adjuvants for...

  18. A GeneTrek analysis of the maize genome.

    Science.gov (United States)

    Liu, Renyi; Vitte, Clémentine; Ma, Jianxin; Mahama, A Assibi; Dhliwayo, Thanda; Lee, Michael; Bennetzen, Jeffrey L

    2007-07-10

    Analysis of the sequences of 74 randomly selected BACs demonstrated that the maize nuclear genome contains approximately 37,000 candidate genes with homologues in other plant species. An additional approximately 5,500 predicted genes are severely truncated and probably pseudogenes. The distribution of genes is uneven, with approximately 30% of BACs containing no genes. BAC gene density varies from 0 to 7.9 per 100 kb, whereas most gene islands contain only one gene. The average number of genes per gene island is 1.7. Only 72% of these genes show collinearity with the rice genome. Particular LTR retrotransposon families (e.g., Gyma) are enriched on gene-free BACs, most of which do not come from pericentromeres or other large heterochromatic regions. Gene-containing BACs are relatively enriched in different families of LTR retrotransposons (e.g., Ji). Two major bursts of LTR retrotransposon activity in the last 2 million years are responsible for the large size of the maize genome, but only the more recent of these is well represented in gene-containing BACs, suggesting that LTR retrotransposons are more efficiently removed in these domains. The results demonstrate that sample sequencing and careful annotation of a few randomly selected BACs can provide a robust description of a complex plant genome.

  19. Insertion of reticuloendotheliosis virus long terminal repeat into CVI988 strain of Marek’s disease virus results in enhanced growth and protection

    Science.gov (United States)

    It has been reported that co-cultivation of a JM/102W strain, a virulent strain of Marek’s disease virus (MDV), with reticuloendotheliosis virus (REV) resulted in the integration of REV long terminal repeat (LTR) into the MDV repeat region. The resulting virus, RM1, was unable to transform T-cells ...

  20. Insertion of reticuloendotheliosis virus long terminal repeat into a bacterial artificial chromosome clone of a very virulent Marek's disease virus alters its pathogenicity

    Science.gov (United States)

    Co-cultivation of strain JM/102W of Marek’s disease virus (MDV) with reticuloendotheliosis virus (REV) resulted in the generation of a recombinant MDV containing REV long terminal repeat (LTR) named RM1 strain of MDV; a strain that was highly attenuated for oncogenicity, but induced severe bursal an...

  1. Functional Analysis of the Proto-oncogenes Septin9 and Nras

    DEFF Research Database (Denmark)

    Lassen, Louise Berkhoudt

    regardless of genotype indicating an oncogenic role of SEPT9. Nras is a potent proto-oncogene involved in signaling through a number of proliferative pathways. Earlier detected retroviral integration sites resulting in B-cell lymphomas were used to create Nras knock in models harboring the LTR from...

  2. Cloning, Characterization and Phylogenetic Analysis of a Typical Long Terminal Repeat Retrotransposon in Phyllostachys heterocycla cv.pubescens%一个毛竹典型LTR转座子的克隆、鉴定及进化分析

    Institute of Scientific and Technical Information of China (English)

    周敏; 汤定钦; 周明兵

    2014-01-01

    LTR反转录转座子普遍存在于植物界中.为了进一步了解LTR反转录转座子及探索毛竹中存在的可能具有潜在活性的LTR反转录转座子,研究借助毛竹基因组草图数据库,通过LTR-structure软件分析得到一个典型LTR反转录转座子Ph-LTR1,并对其进行鉴定及插入时间的估算,结果表明Ph-LTR1属于Ty3-gypsy类反转录转座子,其两端长末端重复序列同源性高达98.78%,插入时间约为47.9万年,是一个自身具备转座条件的年轻反转录转座子,并且极有可能具有潜在活性.采用同源性搜索方法搜索到52条Ph-LTR1家族元件,并对这些元件结构及其所在基因组的位置进行分析,结果表明Ph-LTR1家族元件中存在大量缺失的元件,且Ph-LTR1家族元件偏向分布于远离基因的区域.研究结果为后续具有潜在活性的LTR反转录转座子转化拟南芥实验奠定了基础,Ph-LTR1家族元件结构及进化分析促进了对于LTR反转录转座子在基因组进化角色的认识与理解.

  3. Acquisition of HIV-1 resistance in T lymphocytes using an ACA-specific E. coli mRNA interferase.

    Science.gov (United States)

    Chono, Hideto; Matsumoto, Kazuya; Tsuda, Hiroshi; Saito, Naoki; Lee, Karim; Kim, Sujeong; Shibata, Hiroaki; Ageyama, Naohide; Terao, Keiji; Yasutomi, Yasuhiro; Mineno, Junichi; Kim, Sunyoung; Inouye, Masayori; Kato, Ikunoshin

    2011-01-01

    Transcriptional activation of gene expression directed by the long terminal repeat (LTR) of HIV-1 requires both the transactivation response element (TAR) and Tat protein. HIV-1 mutants lacking a functional tat gene are not able to proliferate. Here we take a genetic approach to suppress HIV-1 replication based on Tat-dependent production of MazF, an ACA-specific endoribonuclease (mRNA interferase) from Escherichia coli. When induced, MazF is known to cause Bak- and NBK-dependent apoptotic cell death in mammalian cells. We first constructed a retroviral vector, in which the mazF (ACA-less) gene was inserted under the control of the HIV-1 LTR, which was then transduced into CD4+ T-lymphoid CEM-SS cells in such a way that, upon HIV-1 infection, the mazF gene is induced to destroy the infecting HIV-1 mRNA, preventing HIV-1 replication. Indeed, when the transduced cells were infected with HIV-1 IIIB, the viral replication was effectively inhibited, as HIV-1 IIIB p24 could not be detected in the culture medium. Consistently, not only cell growth but also the CD4 level was not affected by the infection. These results suggest that the HIV-1-LTR-regulated mazF gene was effectively induced upon HIV-1 IIIB infection, which is sufficient enough to destroy the viral mRNA from the infected HIV-1 IIIB to completely block viral proliferation in the cells, but not to affect normal cell growth. These results indicate that the T cells transduced with the HIV-1-LTR-regulated mazF gene acquire HIV-1 resistance, providing an intriguing potential for the use of the HIV-1-LTR-regulated mazF gene in anti-HIV gene therapy.

  4. Are they animals or machines? Measuring dehumanization.

    Science.gov (United States)

    Martínez, Rocío; Rodríguez-Bailón, Rosa; Moya, Miguel

    2012-11-01

    The present research deals with two forms of dehumanization: 1) denying uniquely human attributes to others (seeing them as animals); 2) denying human nature to others (seeing them as machines or automata). Studies 1 and 2 explored these two forms of dehumanization, analyzing whether people associated their ingroup more with human-related words (vs. animal- vs. machine-related words) than two different outgroups. A paper and pencil procedure was used to find out which words were associated with the surnames of the ingroup (Spaniards) or the outgroup (Germans, Gypsies). Results showed that participants were more ready to link ingroup than outgroup surnames to human words. They also linked more Gypsy surnames to animal-related words and German surnames with machine-related words. Studies 3 and 4 used the Implicit Association Test to analyze the same ideas and replicated the results of Studies 1 and 2.

  5. Dialektika cigánské férovky. Příspěvek ke kritické antropologii bezpečnosti

    Directory of Open Access Journals (Sweden)

    Václav Walach

    2013-12-01

    Full Text Available Within a Czech socially excluded locality,street violence is recognized as a serious securitythreat. This paper deals with several interpretationsof this phenomenon which is oftentimessymbolized as the ‘Gypsy fair fight’. It is analyzedvia the dialectical method structured around thethesis–antithesis–synthesis conceptual triad.While a prevailing explication in the discourseof respective locale comprehends street violencein terms of ethnic conflict, a less frequent one opposesthis interpretation on the basis of culturalconflict between the so-called decent and inadaptablepeople. The last stage of analysis consists ofre-reading these accounts from the perspectiveemphasizing structural factors in a ‘Gypsy fairfight’ explanation. The aim of the paper is to localizethe social experience of (insecurity in relationto the political order and social structure. Takingthem into account, we can aspire to sociologicallyrelevant knowledge of how security discoursesand practices shape our everyday ways of being.

  6. Identification and characterization of endogenous viral elements for the three key schistosomes of humans.

    Science.gov (United States)

    Li, Na; Li, Quhuan

    2015-01-01

    Endogenous viral elements (EVEs) are widely distributed throughout eukaryotic genomes, and their evolution and potential function have attracted a lot of interest. Draft genome sequences for Schistosoma mansoni, Schistosoma japonicum and Schistosoma haematobium are now available; however, information about EVEs in blood flukes of the genus schistosoma is scanty. Here, genome-wide survey into the putative EVE sequences of the three key schistosome genomes were present. Totally 4, 117 gene sequences were identified, including retrovirus-like gypsy elements, RNA viruses and dsDNA viruses. Compared with S. japonicum and S. haematobium, S. mansoni appeared to greatly out numbered by gypsy members. Phylogenetic analysis revealed one novel endogenous retrovirus element in S. mansoni. This initial characterization of schistosomes showed that schistosomes harbour distinct EVEs that may have played an important evolutionary role. Studies of schistosomes' endogenous viruses helped us to glance at an earlier viral event in the class Trematoda, greatly broadening the field of palaeovirology.

  7. The Contribution by (Forensic) Archaeologists to Human Rights Investigations of Mass Graves

    OpenAIRE

    Juhl, Kirsten

    2005-01-01

    Since the German “Nacht und Nebel” policy of World War II and their industrialised killing of Jews and Gypsies in the Holocaust, state institutionalised, deliberate and systematic practices of making people disappear – whether for political, religious, ethnic, cultural or other motives – has been known as an efficient tool of war and repression. The systematic practice of making people disappear is now known as enforced disappearance, and has lately been recognized as a crime a...

  8. АРХЕТИПЫ ГЕРОЯ И ВЕЛИКОЙ МАТЕРИ В «ЦЫГАНСКОМ ЭПОСЕ» Э. КУСТУРИЦЫ

    OpenAIRE

    Починина, Н.

    2011-01-01

    In the article the main protagonists of the film «Time of the Gypsies» are described as mythological characters and embodied archetypes - the Hero and the Great mother. The names of heroes - Perkhan, Apitsa-Hadidsha are analyzed and the author offers their interpretation in accordance with the status of archetypal character. The basis mythological motifs in the E. Kusturica product are discovered.

  9. The Kodály and Rajkó Methods: Voices, Instruments, Ethnicity, and the Globalization of Hungarian Music Education in the Twentieth Century

    Directory of Open Access Journals (Sweden)

    Lynn M. Hooker

    2016-01-01

    Full Text Available Music is one of the fields in which Hungary has distinguished itself around the world, and music education is an arena in which Hungarian methods have had a profound impact. The basic principles of Hungarian music-pedagogical methods, developed by Zoltán Kodály (1882–1967 and his disciples and thus known as the Kodály method, are systematic instruction in sight-singing using “movable-do” solfège and rhythmic syllables, with the ideal of developing music literacy in all children through high-quality music, mainly classical and folk repertoire for choirs. Another type of well-known Hungarian music, so-called “Gypsy music,” is specifically denied legitimacy both in Kodály’s writings and those of some of his students, for two reasons: much of it is primarily instrumental instead of vocal, and it is considered “bad.” Yet Romani (Gypsy musicians from Hungary have also become famous internationally, some from quite a young age. The Rajkó Ensemble, established in 1952 as the Gypsy Orchestra of the Young Communists’ League, brought Hungarian and Hungarian-Gypsy music to over a hundred countries over the years. Interviews with Rajkó members, some conducted by the author and some previously published, reveal those musicians struggling to claim the legitimacy not only of their music but of their music pedagogy, implicitly comparing the Rajkó method to the Kodály method. After a brief discussion of the Kodály method and its history, this essay gives some examples of how that method has dealt with talented Romani youth in Hungary; compares the Kodály method to methods of teaching instrumental music in Roma communities and in the Rajkó Ensemble; and considers how American ideals of multicultural education challenge some of Kodály’s tenets.

  10. Transport of Bacillus thuringiensis var. Kurstaki Via Fomites

    Science.gov (United States)

    2011-01-01

    Special Feature: Remediation Transport of Bacillus Thuringiensis var. Kurstaki Via Fomites Sheila Van Cuyk, Lee Ann B. Veal, Beverley Simpson, and...evaluate biodefense concepts of operations using routine spraying of Bacillus thuringiensis var. kurstaki (Btk). Btk is dispersed in large quantities as...used is a water-based slurry containing Bacillus thuringiensis var. kurstaki (Btk). This bacterium produces a toxin that is lethal to gypsy moth

  11. Biological control of pests and insects. (Latest citations from the NTIS bibliographic database). Published Search

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    1996-04-01

    The bibliography contains citations concerning the use of biological agents to control insects and pests. Radiation, genetic breeding, bacteria, fungi, viruses, and pheromones are discussed as alternatives to pesticidal management. Methods for monitoring the effectiveness and environmental impact of these agents are reviewed. Population control of fruit flies, spruce sawflies, flies, mosquitoes, cockroaches, gypsy moths, and other agriculturally-important insects is also discussed. (Contains 50-250 citations and includes a subject term index and title list.) (Copyright NERAC, Inc. 1995)

  12. Biological control of pests and insects. (Latest citations from the NTIS bibliographic database). Published Search

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    1995-02-01

    The bibliography contains citations concerning the use of biological agents to control insects and pests. Radiation, genetic breeding, bacteria, fungi, viruses, and pheromones are discussed as alternatives to pesticidal management. Methods for monitoring the effectiveness and environmental impact of these agents are reviewed. Population control of fruit flies, spruce sawflies, flies, mosquitoes, cockroaches, gypsy moths, and other agriculturally-important insects is also discussed. (Contains a minimum of 190 citations and includes a subject term index and title list.)

  13. Daily Report East Europe Supplement.

    Science.gov (United States)

    2007-11-02

    trade unions protested jointly and wrote letters to the ministers of industry, labor, and finance. On 9 March, at the talks on reconciling interests...Center Accord, nor Antoni Macierewicz, the leader of the Action Poland Move- ment, appeared on the list of the 20 most popular politi- cians...Tudor no longer has the monopoly on animosity toward Romania’s minori- ties—the Hungarians, the Gypsies, and the Jews. The editorial in THE NEW RIGHT’S

  14. Highlights of forest pest conditions in the maritimes at the end of June, 1993. Technical note No. 285. Annual publication

    Energy Technology Data Exchange (ETDEWEB)

    Hurley, J.E.

    1993-01-01

    This note describes forest pest conditions in the Maritimes at the end of June, 1993. It discusses diseases and pests found including forest tent caterpiller, gypsy moth, red shoots of balsam fir, aspen leafroller, spruce budworm, poplar serpentine leafminer, maple leafroller, and spruce spider mite. Others include elm leafminer, leafroller of birch, satin moth, cherry blight, aspen twoleaf, fall cankerworm, winter moth, and leaf and twig blight of aspen.

  15. Racial and social discrimination in the EFL class: the case of the roma minority

    OpenAIRE

    Madrid, Daniel

    2011-01-01

    This paper aims to study Andalusian students??? and teachers??? perceptions of social and racial discrimination in the EFL class with special reference to the Roma (gypsy) minority. After a brief introduction on racial discrimination in the world, figures are presented to illustrate the situation in Spain, especially with regard to the Roma ethnic minority in Andalusian schools. The main premises of critical race theory and some studies which have contributed to clarifying the ...

  16. The ORSER LANDSAT Data Base of Pennsylvania

    Science.gov (United States)

    Turner, B. J.; Williams, D. L.

    1982-01-01

    A mosaicked LANDSAT data base for Pennsylvania, installed at the computation center of the Pennsylvania State University is described. Initially constructed by Penn State's Office for Remote Sensing of Earth Resources (ORSER) for the purpose of assisting in state-wide mapping of gypsy moth defoliation, the data base will be available to a variety of potential users. It will provide geometrically correct LANDSAT data accessible by political, jurisdictional, or arbitrary boundaries.

  17. Patterns of Discrimination, Grievances and Political Activity Among Europe's Roma: A Cross-Sectional Analysis

    Directory of Open Access Journals (Sweden)

    Jonathan Fox

    2001-01-01

    Full Text Available The purpose of this study is to analyse in a large-n cross-sectional format the patterns of discrimination, grievances and political activity among European Roma (Gypsies using data from the Minority at Risk project. The model tested here is a two-step model positing that discrimination leads to grievance formation which in turn leads to protest and rebellion. The results show that the Roma, in general, conform to this model but differ in some important specifics.

  18. Possible Influence of MLP Regulators in Foliage of Host Species on Invasion of Phyllophagous Insects

    Directory of Open Access Journals (Sweden)

    Vasiliy I. Ponomarev

    2010-01-01

    Full Text Available On the northern border of the Gypsy moth area (Lymantria dispar L., 1758, caterpillars are reorient to exogenous regulators of membrane lipid peroxidation in connection with repeated cold periods during feeding. In case of an introduction of host plants with high contents of exogenous regulators of MLP (e.g. Fe2+ in foliage in these areas that may affect diapause duration, the boundaries of spreading and intensity of outbreaks may change.

  19. La representación de los gitanos en la prensa española

    Directory of Open Access Journals (Sweden)

    Flora del Río Pedraza

    2011-10-01

    Full Text Available Este trabajo analizará el discurso de dos periódicos nacionales y dos periódicos locales con el objetivo de obtener una aproximación a la representación que en la prensa se hace del grupo social gitano y detectar un posible sesgo informativo etnocentrista en el tratamiento del mismo. Con el objeto de identificar o descubrir cómo se crean o difunden determinados significados sobre la identidad de los gitanos, se ha elegido la prensa como fuente de datos por la influencia que tiene sobre la población y por su capacidad de creación de consenso sobre el significado de los hechos sociales. Se ha analizado el léxico, la temática, las estructuras sintácticas y las imágenes de las noticias sobre gitanos aparecidas entre el 8 de noviembre de 2005 y el 20 de noviembre de 2010.Palabras clave: prensa, gitanos, racismo, significado social, representaciones, análisis crítico del discurso.___________________Abstract:This paper will analyze the discourse of two national newspapers and two local newspapers with the aim to obtain an approximation to the representation of the gypsy social group in the press and to detect a possible ethnocentric media bias in the treatment of it. To identifying or discovering how meaning about gypsy identity is constructed, it has been chosen the press as a source of data because of its influence over the population and its capacity of creating agreement about the meaning of social facts. It has been analyzed the vocabulary, the themes, the syntactic structures and the pictures of the news about gypsy people in the press between 8th of November 2005 and 20th of November 2010. Keywords: press, gypsy people, racism, social meaning, representations, critical discourse analysis.

  20. NEW TRENDS IN THE PROCESS OF STANDARDIZATION OF ROMANI TERMINOLOGY

    Directory of Open Access Journals (Sweden)

    HRISTO KYUCHUKOV

    2015-01-01

    Full Text Available The paper presents some new developments in Romani (Gypsy language in connection with the process of its standardization. After analyzing published documents by international organizations such as Council of Europe, European Commission and others in Romani, the author tries to find some rules in the process of developing Romani neologism based on English borrowings. A classification on different new grammatical categories in Romani (nouns, adjectives and verbs is done.

  1. Materiální past: Geneze sociálního nápětí v lokalitě Litvínov - Janov ve vztahu k privatizaci bytového fondu

    Directory of Open Access Journals (Sweden)

    Michal Tošner

    2010-04-01

    Full Text Available This article is based on the anthropological fiel-dwork research in the Litvínov–Janov neighborhood (located in northwest of the Czech Republic, which was conducted bythe students of the Department of Anthropological and Historical Sciences (University of West Bohemia. In theoreticalperspective of multi–sited ethnography this article interpretsthe situation of the "ethnic conflict" among non–Gypsy and Gypsy inhabitants of the neighborhood in 2008. Thisapproach highlights the multi–local genesis of the social si-tuation and conflict in relation to the economical and politicaltransition in the field of housing policy and realty ownership,together with processes of gentrification and segregation inthe Czech Republic. Our anthropological research avoidsethnical definitions of situation and discourses of socialexclusion. Instead it focuses on economic, political and socialgenesis in concrete details. The main conclusion is, that this situation is primarily socially and economically determined and ex post ethnically interpreted by the extreme nationalistic movements and consequently accepted as such by inhabitants of Litvínov and by a significant number of ethnic Czechs – not surprisingly in agreement with essencialistic picture of the Gypsies.

  2. Asynchrony between Host Plant and Insects-Defoliator within a Tritrophic System: The Role of Herbivore Innate Immunity.

    Directory of Open Access Journals (Sweden)

    Vyacheslav V Martemyanov

    Full Text Available The effects of asynchrony in the phenology of spring-feeding insect-defoliators and their host plants on insects' fitness, as well as the importance of this effect for the population dynamics of outbreaking species of insects, is a widespread and well-documented phenomenon. However, the spreading of this phenomenon through the food chain, and especially those mechanisms operating this spreading, are still unclear. In this paper, we study the effect of seasonally declined leafquality (estimated in terms of phenolics and nitrogen content on herbivore fitness, immune parameters and resistance against pathogen by using the silver birch Betula pendula--gypsy moth Lymantria dispar--nucleopolyhedrovirus as the tritrophic system. We show that a phenological mismatch induced by the delay in the emergence of gypsy moth larvae and following feeding on mature leaves has negative effects on the female pupal weight, on the rate of larval development and on the activity of phenoloxidase in the plasma of haemolymph. In addition, the larval susceptibility to exogenous nucleopolyhydrovirus infection as well as covert virus activation were both enhanced due to the phenological mismatch. The observed effects of phenological mismatch on insect-baculovirus interaction may partially explain the strong and fast fluctuations in the population dynamics of the gypsy moth that is often observed in the studied part of the defoliator area. This study also reveals some indirect mechanisms of effect related to host plant quality, which operate through the insect innate immune status and affect resistance to both exogenous and endogenous virus.

  3. Asynchrony between Host Plant and Insects-Defoliator within a Tritrophic System: The Role of Herbivore Innate Immunity

    Science.gov (United States)

    Martemyanov, Vyacheslav V.; Pavlushin, Sergey V.; Dubovskiy, Ivan M.; Yushkova, Yuliya V.; Morosov, Sergey V.; Chernyak, Elena I.; Efimov, Vadim M.; Ruuhola, Teija; Glupov, Victor V.

    2015-01-01

    The effects of asynchrony in the phenology of spring-feeding insect-defoliators and their host plants on insects’ fitness, as well as the importance of this effect for the population dynamics of outbreaking species of insects, is a widespread and well-documented phenomenon. However, the spreading of this phenomenon through the food chain, and especially those mechanisms operating this spreading, are still unclear. In this paper, we study the effect of seasonally declined leafquality (estimated in terms of phenolics and nitrogen content) on herbivore fitness, immune parameters and resistance against pathogen by using the silver birch Betula pendula—gypsy moth Lymantria dispar—nucleopolyhedrovirus as the tritrophic system. We show that a phenological mismatch induced by the delay in the emergence of gypsy moth larvae and following feeding on mature leaves has negative effects on the female pupal weight, on the rate of larval development and on the activity of phenoloxidase in the plasma of haemolymph. In addition, the larval susceptibility to exogenous nucleopolyhydrovirus infection as well as covert virus activation were both enhanced due to the phenological mismatch. The observed effects of phenological mismatch on insect-baculovirus interaction may partially explain the strong and fast fluctuations in the population dynamics of the gypsy moth that is often observed in the studied part of the defoliator area. This study also reveals some indirect mechanisms of effect related to host plant quality, which operate through the insect innate immune status and affect resistance to both exogenous and endogenous virus. PMID:26115118

  4. When need for closure leads to positive attitudes towards a negatively stereotyped outgroup.

    Science.gov (United States)

    Kossowska, Małgorzata; Dragon, Piotr; Bukowski, Marcin

    The study examined the relationship between epistemic motivation, which is the need for closure (NFC), and positive attitudes towards a negatively stereotyped outgroup (i.e., Gypsies). Although extensive research has revealed that NFC is related to derogatory behavioural tendencies and negative emotions towards stereotyped groups, it is proposed that NFC may also be linked to positive attitudes towards outgroups. It is predicted, however, that this would be true only when NFC is accompanied by a low ability to achieve closure (AAC). It is argued that low AAC impairs the construction of schema and their effective application. Therefore, NFC in individuals with low AAC may lead them to correct their initial tendency to use stereotypes and, as a consequence, to evaluate a negatively stereotyped outgroup in a positive way. In this research, low AAC was assessed by a scale (Study 1) and experimentally induced (Study 2). In both studies, we measured positive attitudes towards Gypsies. The results of the studies supported our prediction that NFC is positively related to positive attitudes towards Gypsies when AAC is low.

  5. Vztah spišských Romů k přírodě ve světle antropologických teorií

    Directory of Open Access Journals (Sweden)

    Vojtěch Pelikán

    2010-12-01

    Full Text Available This article deals with relation between Romanies from Spiš and nature. It discusses its connections with their ethnic identity. It fits the topic in context of anthropological theories, which are completed with knowledge of psychologists and gypsy-focused historians. It argues with a shortcut of harmonious coexistence of Romanies and nature (“Myth of the ecologically noble savage” and also with authors who deny them direct relationship with nature. Study finds theoretical background among five authors dealing with foreign gypsy groups from anthropological perspective. At the end text formulates two hypotheses: Romanies from Spiš have distinctive relationship with nature and their ethnicity can be view as both “non-Gorgio” and “non-natural”.  The non-agrarian relationship to landscape (nature as environment is more specific and is rather evolving contrary to majority; however, landscape in surroundings of settlements has strong spiritual tone and acts as a space of immediate interaction with supernatural. Dichotomy nature-culture (relationship to nature as a principle is quite similar to other ethnic groups and to our non-modern history. Second hypothesis comes from studies upon relevant majority stereotypes of Gypsies. It says major look on Romanies is in many ways similar to our view of nature and also has very analogical evolution.

  6. A seroepidemiologic study of hepatitis A in Spanish children. Relationship of prevalence to age and socio-environmental factors.

    Science.gov (United States)

    Morales, J L; Huber, L; Gallego, S; Alvarez, G; Diez-Delgado, J; González, A; Aguilar, L; Dal-Ré, R

    1992-01-01

    Three child population groups from the Madrid area were studied for anti-HAV antibodies. Analysis was carried out with respect to age and socio-environmental factors. The population understudy was composed of 156 children, with ages ranging from 1 to 14 years; they were stratified in three socio-environmental groups (white-family unit, gypsy-family unit and orphanage), and also divided into subgroups according to age. As a whole, an age-related increase in prevalence was found. The overall seroprevalence by socio-environmental groups was: gypsy-family unit 63%, orphanage 46%, and white-family unit 23%. Significant differences between groups appeared from seven years on, being more marked among the eldest subgroups. Among the factors evaluated, hygienic-sanitary conditions and overcrowding influenced the high prevalence rate found in the gypsy-family unit subjects, whereas overcrowding appeared to be responsible for the higher prevalence in orphanage residents, as compared to white-family unit children.

  7. Herbivore-induced volatile emission in black poplar: regulation and role in attracting herbivore enemies.

    Science.gov (United States)

    Clavijo McCormick, Andrea; Irmisch, Sandra; Reinecke, Andreas; Boeckler, G Andreas; Veit, Daniel; Reichelt, Michael; Hansson, Bill S; Gershenzon, Jonathan; Köllner, Tobias G; Unsicker, Sybille B

    2014-08-01

    After herbivory, plants release volatile organic compounds from damaged foliage as well as from nearby undamaged leaves that attract herbivore enemies. Little is known about what controls the volatile emission differences between damaged and undamaged tissues and how these affect the orientation of herbivore enemies. We investigated volatile emission from damaged and adjacent undamaged foliage of black poplar (Populus nigra) after herbivory by gypsy moth (Lymantria dispar) caterpillars and determined the compounds mediating the attraction of the gypsy moth parasitoid Glyptapanteles liparidis (Braconidae). Female parasitoids were more attracted to gypsy moth-damaged leaves than to adjacent non-damaged leaves. The most characteristic volatiles of damaged versus neighbouring undamaged leaves included terpenes, green leaf volatiles and nitrogen-containing compounds, such as aldoximes and nitriles. Electrophysiological recordings and olfactometer bioassays demonstrated the importance of nitrogenous volatiles. Under field conditions, parasitic Hymenoptera were more attracted to traps baited with these substances than most other compounds. The differences in volatile emission profiles between damaged and undamaged foliage appear to be regulated by jasmonate signalling and the local activation of volatile biosynthesis. We conclude that characteristic volatiles from damaged black poplar foliage are essential cues enabling parasitoids to find their hosts.

  8. Risk Reduction of an Invasive Insect by Targeting Surveillance Efforts with the Assistance of a Phenology Model and International Maritime Shipping Routes and Schedules.

    Science.gov (United States)

    Gray, David R

    2016-05-01

    Reducing the risk of introduction to North America of the invasive Asian gypsy moth (Lymantria dispar asiatica Vnukovskij and L. d. japonica [Motschulsky]) on international maritime vessels involves two tactics: (1) vessels that wish to arrive in Canada or the United States and have visited any Asian port that is subject to regulation during designated times must obtain a predeparture inspection certificate from an approved entity; and (2) vessels with a certificate may be subjected to an additional inspection upon arrival. A decision support tool is described here with which the allocation of inspection resources at North American ports can be partitioned among multiple vessels according to estimates of the potential onboard Asian gypsy moth population and estimates of the onboard larval emergence pattern. The decision support tool assumes that port inspection is uniformly imperfect at the Asian ports and that each visit to a regulated port has potential for the vessel to be contaminated with gypsy moth egg masses. The decision support tool uses a multigenerational phenology model to estimate the potential onboard population of egg masses by calculating the temporal intersection between the dates of port visits to regulated ports and the simulated oviposition pattern in each port. The phenological development of the onboard population is simulated each day of the vessel log until the vessel arrives at the port being protected from introduction. Multiple independent simulations are used to create a probability distribution of the size and timing of larval emergence.

  9. HIV transcription is induced in dying cells

    Energy Technology Data Exchange (ETDEWEB)

    Woloschak, G.E.; Chang-Liu, Chin-Mei [Argonne National Lab., IL (United States); Schreck, S. [Argonne National Lab., IL (United States)]|[Univ. of South Carolina, Columbia, SC (United States). Dept. of Chemistry

    1995-06-01

    Using HeLa cells stably transfected with an HIV-LTR-CAT construct, we demonstrated a peak in CAT induction that occurs in viable (but not necessarily cell-division-competent) cells 24 h following exposure to some cell-killing agents. {gamma} rays were the only cell-killing agent which did not induce HIV transcription; this can be attributed to the fact that {gamma}-ray-induced apoptotic death requires functional p53, which is not present in HeLa cells. For all other agents, HIV-LTR induction was dose-dependent and correlated with the amount of cell killing that occurred in the culture. 14 refs., 4 figs., 1 tab.

  10. Multimedia Content Based Image Retrieval Iii: Local Tetra Pattern

    Directory of Open Access Journals (Sweden)

    Nagaraja G S

    2014-06-01

    Full Text Available Content Based Image Retrieval methods face several challenges while presentation of results and precision levels due to various specific applications. To improve the performance and address these problems a novel algorithm Local Tetra Pattern (LTrP is proposed which is coded in four direction instead of two direction used in Local Binary Pattern (LBP, Local Derivative Pattern (LDP andLocal Ternary Pattern(LTP.To retrieve the images the surrounding neighbor pixel value is calculated by gray level difference, which gives the relation between various multisorting algorithms using LBP, LDP, LTP and LTrP for sorting the images. This method mainly uses low level features such as color, texture and shape layout for image retrieval.

  11. Complete genome sequence of a recombinant Marek's disease virus field strain with one reticuloendotheliosis virus long terminal repeat insert.

    Science.gov (United States)

    Su, Shuai; Cui, Ning; Cui, Zhizhong; Zhao, Peng; Li, Yanpeng; Ding, Jiabo; Dong, Xuan

    2012-12-01

    Marek's disease virus (MDV) Chinese strain GX0101, isolated in 2001 from a vaccinated flock of layer chickens with severe tumors, was the first reported recombinant MDV field strain with one reticuloendotheliosis virus (REV) long terminal repeat (LTR) insert. GX0101 belongs to very virulent MDV (vvMDV) but has higher horizontal transmission ability than the vvMDV strain Md5. The complete genome sequence of GX0101 is 178,101 nucleotides (nt) and contains only one REV-LTR insert at a site 267 nt upstream of the sorf2 gene. Moreover, GX0101 has 5 repeats of a 217-nt fragment in its terminal repeat short (TRS) region and 3 repeats in internal repeat short (IRS) region, compared to the other 10 strains with only 1 or 2 repeats in both TRS and IRS.

  12. Loop transfer recovery for general observer architecture

    DEFF Research Database (Denmark)

    Niemann, Hans Henrik; Søgaard-Andersen, Per; Stoustrup, Jakob

    1991-01-01

    A general and concise formulation is given of the loop transfer recovery (LTR) design problem based on recovery errors. Three types of recovery errors are treated: open loop recovery, sensitivity recovery and input-output recovery errors. The three corresponding versions of the asymptotic recovery...... recovery cases. This general recovery formulation covers all known observer based compensator types as special cases. The conditions given in this setting are effectively the aim of all known LTR design methods. The recovery formulation is interpreted in terms of a modelmatching problem as well, which...... is examined by means of the Q-parametrization. It is shown how the general controller obtained by the Q-parametrization can be written as a Luenberger observer based controller. In all cases, n controller states suffice to achieve recovery. The compensators are characterized for errors both on the input...

  13. Laboratory technology research: Abstracts of FY 1998 projects

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    1998-11-01

    The Laboratory Technology Research (LTR) program supports high-risk, multidisciplinary research partnerships to investigate challenging scientific problems whose solutions have promising commercial potential. These partnerships capitalize on two great strengths of the country: the world-class basic research capability of the DOE Office of Science (SC) national laboratories and the unparalleled entrepreneurial spirit of American industry. Projects supported by the LTR program in FY 1998 explore the applications of basic research advances relevant to DOE`s mission over a full range of scientific disciplines. The program presently emphasizes three critical areas of mission-related research: advanced materials, intelligent processing and manufacturing research, and environmental and biomedical research. Abstracts for 85 projects are contained in this report.

  14. Determinants of Genomic RNA Encapsidation in the Saccharomyces cerevisiae Long Terminal Repeat Retrotransposons Ty1 and Ty3

    Directory of Open Access Journals (Sweden)

    Katarzyna Pachulska-Wieczorek

    2016-07-01

    Full Text Available Long-terminal repeat (LTR retrotransposons are transposable genetic elements that replicate intracellularly, and can be considered progenitors of retroviruses. Ty1 and Ty3 are the most extensively characterized LTR retrotransposons whose RNA genomes provide the template for both protein translation and genomic RNA that is packaged into virus-like particles (VLPs and reverse transcribed. Genomic RNAs are not divided into separate pools of translated and packaged RNAs, therefore their trafficking and packaging into VLPs requires an equilibrium between competing events. In this review, we focus on Ty1 and Ty3 genomic RNA trafficking and packaging as essential steps of retrotransposon propagation. We summarize the existing knowledge on genomic RNA sequences and structures essential to these processes, the role of Gag proteins in repression of genomic RNA translation, delivery to VLP assembly sites, and encapsidation.

  15. Numerical Analysis of Autoignition and Combustion of n-Butane and Air Mixture in Homogeneous-Charge Compression-Ignition Engine Using Elementary Reactions

    Science.gov (United States)

    Yamasaki, Yudai; Iida, Norimasa

    The present study focuses on clarifying the combustion mechanism of the homogeneous-charge compression-ignition (HCCI) engine in order to control ignition and combustion as well as to reduce HC and CO emissions and to maintain high combustion efficiency by calculating the chemical kinetics of elementary reactions. For the calculations, n-butane was selected as fuel since it is a fuel with the smallest carbon number in the alkane family that shows two-stage autoignition (heat release with low-temperature reaction (LTR) and with high-temperature reaction (HTR)) similarly to higher hydrocarbons such as gasoline. The CHEMKIN code was used for the calculations assuming zero dimensions in the combustion chamber and adiabatic change. The results reveal the heat release mechanism of the LTR and HTR, the control factor of ignition timing and combustion speed, and the condition need to reduce HC and CO emissions and to maintain high combustion efficiency.

  16. Leukotrienes induce the migration of Th17 cells.

    Science.gov (United States)

    Lee, Wonyong; Su Kim, Hyeong; Lee, Gap Ryol

    2015-01-01

    Th17 cell trafficking in response to leukotriene signaling is poorly understood. Here we showed that Th17 cells express high levels of leukotriene B4 receptor 1 (LTB4R1) and cysteinyl leukotriene receptor 1 (CysLTR1). Th17 cells migrated under the guidance of leukotriene B4 and D4. The migration of Th17 cells was more efficient than that of Th1 and Th2 cells, and it was blocked by specific inhibitors of LTB4R1 or CysLTR1. Studies in an animal model of experimental autoimmune encephalomyelitis revealed that treatment with montelukast alleviated disease symptoms and inhibited the recruitment of Th17 cells to the central nervous system. Thus, leukotrienes may act as chemoattractants for Th17 cells.

  17. Not so bad after all: retroviruses and long terminal repeat retrotransposons as a source of new genes in vertebrates.

    Science.gov (United States)

    Naville, M; Warren, I A; Haftek-Terreau, Z; Chalopin, D; Brunet, F; Levin, P; Galiana, D; Volff, J-N

    2016-04-01

    Viruses and transposable elements, once considered as purely junk and selfish sequences, have repeatedly been used as a source of novel protein-coding genes during the evolution of most eukaryotic lineages, a phenomenon called 'molecular domestication'. This is exemplified perfectly in mammals and other vertebrates, where many genes derived from long terminal repeat (LTR) retroelements (retroviruses and LTR retrotransposons) have been identified through comparative genomics and functional analyses. In particular, genes derived from gag structural protein and envelope (env) genes, as well as from the integrase-coding and protease-coding sequences, have been identified in humans and other vertebrates. Retroelement-derived genes are involved in many important biological processes including placenta formation, cognitive functions in the brain and immunity against retroelements, as well as in cell proliferation, apoptosis and cancer. These observations support an important role of retroelement-derived genes in the evolution and diversification of the vertebrate lineage.

  18. Transcellular activation of the human immunodeficiency virus type 1 long terminal repeat in T lymphocytes requires CD4-gp120 binding.

    Science.gov (United States)

    Marcuzzi, A; Lowy, I; Weinberger, O K

    1992-01-01

    Cells expressing human immunodeficiency virus type 1 (HIV-1) tat can transactivate the HIV-1 long terminal repeat (LTR) in cocultured T lymphocytes. In this report, we describe the molecular requirements for transcellular activation of the LTR in Jurkat cells. An analysis with deletion mutants and blocking antibodies demonstrated a requirement for env expression in addition to tat expression for transcellular activation to occur. The results suggest that the transient association of CD4 and gp120 in cocultured cells is required for tat-mediated transcellular activation. The events that follow CD4-gp120 binding in transactivation, however, do not require the gp120-neutralizing domain, in contrast to HIV-mediated fusion and infection. The consequences of this interaction on cellular function are currently under investigation. Images PMID:1351104

  19. Laboratory Technology Research: Abstracts of FY 1996 projects

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    1996-12-31

    The Laboratory Technology Research (LTR) program supports high-risk, multidisciplinary research partnerships to investigate challenging scientific problems whose solutions have promising commercial potential. These partnerships capitalize on two great strengths of this country: the world-class basic research capability of the DOE Energy Research (ER) multi-program national laboratories and the unparalleled entrepreneurial spirit of American industry. Projects supported by the LTR program are conducted by the five ER multi-program laboratories: Argonne, Brookhaven, Lawrence Berkeley, Oak Ridge, and Pacific Northwest National Laboratories. These projects explore the applications of basic research advances relevant to Department of Energy`s (DOE) mission over a full range of scientific disciplines. The program presently emphasizes three critical areas of mission-related research: advanced materials, intelligent processing/manufacturing research, and sustainable environments.

  20. Acquisition Management for Systems-of-Systems: Analysis of Alternatives via Computational Exploratory Model

    Science.gov (United States)

    2012-02-03

    as ADP amd MPC) to bear upon the immediate acquisition problem, keeping enterprise, model-centric architectures of decision-making processes in...useful in model-centric enterprise systems, where clear visualization of connectivity between individual systems is crucial to the design and...html/proj- constella tion/ltr-rep.pdf [accessed 15 January 2009]. Dekker, T. J., & Hoffmann, W. (1989). Rehabilitation of the Gauss-Jordan Algorithm