WorldWideScience

Sample records for chirped-pulse amplification system

  1. Hybrid chirped pulse amplification system

    Science.gov (United States)

    Barty, Christopher P.; Jovanovic, Igor

    2005-03-29

    A hybrid chirped pulse amplification system wherein a short-pulse oscillator generates an oscillator pulse. The oscillator pulse is stretched to produce a stretched oscillator seed pulse. A pump laser generates a pump laser pulse. The stretched oscillator seed pulse and the pump laser pulse are directed into an optical parametric amplifier producing an optical parametric amplifier output amplified signal pulse and an optical parametric amplifier output unconverted pump pulse. The optical parametric amplifier output amplified signal pulse and the optical parametric amplifier output laser pulse are directed into a laser amplifier producing a laser amplifier output pulse. The laser amplifier output pulse is compressed to produce a recompressed hybrid chirped pulse amplification pulse.

  2. Dispersion compensation in chirped pulse amplification systems

    Science.gov (United States)

    Bayramian, Andrew James; Molander, William A.

    2014-07-15

    A chirped pulse amplification system includes a laser source providing an input laser pulse along an optical path. The input laser pulse is characterized by a first temporal duration. The system also includes a multi-pass pulse stretcher disposed along the optical path. The multi-pass pulse stretcher includes a first set of mirrors operable to receive input light in a first plane and output light in a second plane parallel to the first plane and a first diffraction grating. The pulse stretcher also includes a second set of mirrors operable to receive light diffracted from the first diffraction grating and a second diffraction grating. The pulse stretcher further includes a reflective element operable to reflect light diffracted from the second diffraction grating. The system further includes an amplifier, a pulse compressor, and a passive dispersion compensator disposed along the optical path.

  3. Hybrid Chirped Pulse Amplification

    Energy Technology Data Exchange (ETDEWEB)

    Jovanovic, I; Barty, C P J

    2002-05-07

    We present a novel chirped pulse amplification method which combines optical parametric amplification and laser amplification. We have demonstrated this hybrid CPA concept with a combination of beta-barium borate and Ti:sapphire. High-efficiency, multi-terawatt compatible amplification is achieved without gain narrowing and without electro-optic modulators using a simple commercial pump laser.

  4. Millijoule pulse energy picosecond fiber chirped-pulse amplification system

    Institute of Scientific and Technical Information of China (English)

    Zhi Yang; Xiaohong Hu; Yishan Wang; Wei Zhang; Wei Zhao

    2011-01-01

    @@ The efficient generation of a 1.17-mJ laser pul8e with 360 ps duration using an ytterbium (Yb)-doped fiber amplifier chain seeded by a homemade mode-locked fiber laser is demonstrated experimentally.A specially designed figure-of-eight fiber laser acts as the seed source of a chirped-pulse amplification (CPA) system and generates mode-locked pulse8 with hundreds of picosecond widths.Two kinds of large-mode-area (LMA) double-clad Yb-doped fibers are employed to construct the pre-amplifier and main amplifier, All of the adopted instruments help avoid severe nonlinearity in fibers to raise sub-nanosecond pulse energy with acceptable signal-to-noise ratio (SNR).The output spectrum of this fiber-based CPA system shows that amplified spontaneous emission (ASE) is suppressed to better than 30 dB, and the onset of stimulated Raman scattering is excluded.%The efficient generation of a 1.17-mJ laser pulse with 360 ps duration using an ytterbium (Yb)-doped fiber amplifier chain seeded by a homemade mode-locked fiber laser is demonstrated experimentally. A specially designed figure-of-eight fiber laser acts as the seed source of a chirped-pulse amplification (CPA) system and generates mode-locked pulses with hundreds of picosecond widths. Two kinds of large-mode-area (LMA) double-clad Yb-doped fibers are employed to construct the pre-amplifier and main amplifier. All of the adopted instruments help avoid severe nonlinearity in fibers to raise sub-nanosecond pulse energy with acceptable signal-to-noise ratio (SNR). The output spectrum of this fiber-based CPA system shows that amplified spontaneous emission (ASE) is suppressed to better than 30 dB, and the onset of stimulated Raman scattering is excluded.

  5. Hyper dispersion pulse compressor for chirped pulse amplification systems

    Energy Technology Data Exchange (ETDEWEB)

    Barty, Christopher P. J. (Hayward, CA)

    2011-11-29

    A grating pulse compressor configuration is introduced for increasing the optical dispersion for a given footprint and to make practical the application for chirped pulse amplification (CPA) to quasi-narrow bandwidth materials, such as Nd:YAG. The grating configurations often use cascaded pairs of gratings to increase angular dispersion an order of magnitude or more. Increased angular dispersion allows for decreased grating separation and a smaller compressor footprint.

  6. Next generation Chirped Pulse Amplification

    Energy Technology Data Exchange (ETDEWEB)

    Nees, J.; Biswal, S.; Mourou, G. [Univ. Michigan, Center for Ultrafast Optical Science, Ann Arbor, MI (United States); Nishimura, Akihiko; Takuma, Hiroshi

    1998-03-01

    The limiting factors of Chirped Pulse Amplification (CPA) are discussed and experimental results of CPA in Yb:glass regenerative amplifier are given. Scaling of Yb:glass to the petawatt level is briefly discussed. (author)

  7. Dispersion Analysis and Compensation of Collinear Optical Parametric Chirped Pulse Amplification Systems

    Institute of Scientific and Technical Information of China (English)

    WANG Cheng; LENG Yu-Xin; LIANG Xiao-Yan; ZHANG Chun-Mei; ZHAO Bao-Zhen; XU Zhi-Zhan

    2005-01-01

    @@ In an optical parametric chirped pulse amplification (OPCPA) laser system, residual phase dispersion should be compensated as much as possible to shorten the amplified pulses and improve the pulse contrast ratio. Expressions of orders of the induced phases in collinear optical parametric amplification (OPA) processes are presented at the central signal wavelength to depict a clear physics picture and to simplify the design of phase compensation. As examples, we simulate two OPCPA systems to compensate for the phases up to the partial fourth-order terms,and obtain flat phase spectra of 200-nm bandwidth at 1064 nm and 90-nm at 800nm.

  8. Compensation of high-order phase distortions in chirped-pulse amplification system

    Science.gov (United States)

    Zhou, Bing; Jiang, Yong-Liang; Leng, Yu-xin; Chen, Xiao-Wei; Li, Ru-Xin; Xu, Zhi-Zhan

    2007-01-01

    Chirped-pulse amplification (CPA) technique has been widely used to generate ultra-intense femto-second pulses. In this scheme the seed pulses from an oscillator are stretched before amplification. The stretched pulses can support more energy extraction and effectively decrease the nonlinear effects in the gain media. The subsequent amplification in a CPA chain will result in a broadening of the output compressed pulses in temporal domain due to the gain narrowing and uncompensated phase distortions. In our experiment, using spectral modulation and phase pre-compensation system (Acoustic-Optics Programmable Dispersive Filter) between the oscillator and the stretcher, the effects of gain narrowing and high-order dispersions on the pulse duration in kHz chirped-pulse amplification system have been pre-compensated, and the spectral FWHM is expanded from 30nm to 50nm. The effects of GDD, TOD and FOD were investigated by scanning the four dispersion parameters respectively. By pre-compensating the high-order phase distortions with the phase measured by SPIDER, we successfully optimize the output duration from 51fs to 30fs, which is 1.07 times Fourier-transform-limitation.

  9. Components for monolithic fiber chirped pulse amplification laser systems

    Science.gov (United States)

    Swan, Michael Craig

    The first portion of this work develops techniques for generating femtosecond-pulses from conventional fabry-perot laser diodes using nonlinear-spectral-broadening techniques in Yb-doped positive dispersion fiber ampliers. The approach employed an injection-locked fabry-perot laser diode followed by two stages of nonlinear-spectral-broadening to generate sub-200fs pulses. This thesis demonstrated that a 60ps gain-switched fabry-perot laser-diode can be injection-locked to generate a single-longitudinal-mode pulse and compressed by nonlinear spectral broadening to 4ps. Two problems have been identified that must be resolved before moving forward with this approach. First, gain-switched pulses from a standard diode-laser have a number of characteristics not well suited for producing clean self-phase-modulation-broadened pulses, such as an asymmetric temporal shape, which has a long pulse tail. Second, though parabolic pulse formation occurs for any arbitrary temporal input pulse profile, deviation from the optimum parabolic input results in extensively spectrally modulated self-phase-modulation-broadened pulses. In conclusion, the approach of generating self-phase-modulation-broadened pulses from pulsed laser diodes has to be modified from the initial approach explored in this thesis. The first Yb-doped chirally-coupled-core ber based systems are demonstrated and characterized in the second portion of this work. Robust single-mode performance independent of excitation or any other external mode management techniques have been demonstrated in Yb-doped chirally-coupled-core fibers. Gain and power efficiency characteristics are not compromised in any way in this novel fiber structure up to the 87W maximum power achieved. Both the small signal gain at 1064nm of 30.3dB, and the wavelength dependence of the small signal gain were comparable to currently deployed large-mode-area-fiber technology. The efficiencies of the laser and amplifier were measured to be 75% and 54

  10. High-power chirped-pulse all-fiber amplification system based on large-mode-area fiber gratings

    OpenAIRE

    Broderick, N.G.R.; Richardson, D.J.; Taverner, D.; Caplen, J.E.; Dong, L.; Ibsen, M.

    1999-01-01

    The fabrication of large mode-area single mode fibres are crucial to developing high power all-fibre lasers and amplifiers. We report the amplification of picosecond pulses to microjoule energy levels and pulse peak powers in excess of 500kW in an all fiber Chirped Pulse Amplification (CPA) system based on novel large mode area fiber components.

  11. Pulse Distortion in Saturated Fiber Optical Parametric Chirped Pulse Amplification

    OpenAIRE

    Lali-Dastjerdi, Zohreh; Da Ros, Francesco; Rottwitt, Karsten; Galili, Michael; Peucheret, Christophe

    2012-01-01

    Fiber optical parametric chirped pulse amplification is experimentally compared for different chirped pulses in the picosecond regime. The amplified chirped pulses show distortion appearing as pedestals after recompression when the amplifier is operated in saturation.

  12. Pulse Distortion in Saturated Fiber Optical Parametric Chirped Pulse Amplification

    DEFF Research Database (Denmark)

    Lali-Dastjerdi, Zohreh; Da Ros, Francesco; Rottwitt, Karsten;

    2012-01-01

    Fiber optical parametric chirped pulse amplification is experimentally compared for different chirped pulses in the picosecond regime. The amplified chirped pulses show distortion appearing as pedestals after recompression when the amplifier is operated in saturation.......Fiber optical parametric chirped pulse amplification is experimentally compared for different chirped pulses in the picosecond regime. The amplified chirped pulses show distortion appearing as pedestals after recompression when the amplifier is operated in saturation....

  13. Conceptual design of sub-exa-watt system by using optical parametric chirped pulse amplification

    Science.gov (United States)

    Kawanaka, J.; Tsubakimoto, K.; Yoshida, H.; Fujioka, K.; Fujimoto, Y.; Tokita, S.; Jitsuno, T.; Miyanaga, N.; Gekko-EXA Design Team

    2016-03-01

    A 50 PW ultrahigh-peak-power laser has been conceptually designed, which is based on optical parametric chirped pulse amplification (OPCPA). A 250 J DPSSL and a flash- lamp-pumped kJ laser are adopted as new repeatable pump source. The existed LFEX-laser with more than ten kilo joules are used in the final amplifier stage and the OPCPA with the 2x2 tiled pump beams in random phase has been proposed with several ten centimeter aperture. A pulse duration of amplified pulses is set at less than 10 fs. A broadband OPCPA with ∼500 nm of the gain spectral width near 1 μm is required. A partially deuterated KDP (p-DKDP) crystal is one of the most promising nonlinear crystals and our numerical calculation ensured such ultra-broad gain width. p-DKDP crystals with several deuteration ratio have been successfully grown.

  14. High and Stable Conversion Efficiency Obtaining in Single-Stage Multi-Crystal Optical Parametric Chirped Pulse Amplification System

    Institute of Scientific and Technical Information of China (English)

    JIANG Yong-Liang; LENG Yu-Xin; ZHAO Bao-Zhen; WANG Cheng; LIANG Xiao-Yan; LU Hai-He; XU Zhi-Zhan

    2005-01-01

    @@ An optical parametric chirped-pulse amplification system is demonstrated to provide 32.9% pump-to-signal con-version efficiency. Special techniques are used to make the signal and pump pulses match with each other inboth spectral and temporal domains. The broadband 9.5-mJ pulses are produced at the repetition rate of 1 Hzwith the gain of over 1.9 × 108. The output energy fluctuation of 7.8% is achieved for the saturated amplificationprocess against the pump fluctuation of 10%.

  15. High average power, high energy, femto-second fiber chirped pulse amplification system

    OpenAIRE

    He, F.; Price, J.H.V.; De Malinowski, A.; Piper, A.; Ibsen, M; D.J.Richardson; Dawson, J.W.; Siders, C.W.; Britten, J.A.; Barty, C.P.J.

    2007-01-01

    We have demonstrated an Yb-fiber laser system incorporating a CFBG stretcher, bandwidth optimised amplifiers and dielectric grating compressor. The system produced 135 W average power with pulse energy of 13.5 µJ. The recompressed pulse duration was 360 fs.

  16. Generation of synchronized signal and pump pulses for an optical parametric chirped pulse amplification based multi-terawatt Nd:glass laser system

    Indian Academy of Sciences (India)

    M Raghuramaiah; R K Patidar; R A Joshi; P A Naik; P D Gupta

    2010-11-01

    Synchronized signal (650 ps) and pump (1.3 ns) pulses were generated using 4-pass geometry in a grating pair based pulse stretcher unit. The pump pulse has been further amplified in a high gain regenerative amplifier. This amplified pulse was used as the pump in an optical parametric chirped pulse amplification based Nd:glass laser system. As the chirped signal pulse and the pump pulse originated from the same oscillator, the time jitter between the pump pulse and the signal pulse can be <50 ps.

  17. Optical parametric chirped pulse amplification based on photonic crystal fibre

    Institute of Scientific and Technical Information of China (English)

    Wang He-Lin; Yang Ai-Jun; Leng Yu-Xin; Wang Cheng; Xu Zhi-Zhan; Hou Lan-Tian

    2011-01-01

    A compact two-stage optical parametric chirped pulse amplifier based on photonic crystal fibre is demonstrated.A 1064-nm soliton pulse is obtained in a home-made photonic crystal fibre(PCF)with femtosecond pulse pumping and then amplified to 2 mJ in an Nd:YAG regenerative amplifier.After the amplified pulses pass through the LBO crystal,the 532-nm double-frequency light with an energy of 0.8 mJ and a duration of over 100 ps at 10-Hz repetition rate is generated as a pump source in the following two-stage optical parametric amplification(OPA).The 850-am chirped signal light gain from the stretcher is 1.5×104in the first-stage OPA while it is 120 in the second-stage OPA.The total signal gain of optical parametric chirped pulse amplification(OPCPA)can reach 1.8×106.

  18. Broadening and Amplification of an Infrared Femtosecond Pulse for Optical Parametric Chirped-Pulse Amplification

    Institute of Scientific and Technical Information of China (English)

    WANG He-Lin; YANG Ai-Jun; LENG Yu-Xin

    2011-01-01

    A high-average-power diode-pumped narrowband regenerative chirped pulse amplifier is developed using the thin-rod Nd:YAG laser architecture for optical parametric chirped-pulse amplification (OPCPA).The effect of the etalons on the amplified pulse in the regenerative cavity is studied experimentally and theoretically.By inserting glass etalons of thickness 1 mm and 5 mm into the regenerative cavity,the pre-stretching pulse from an (O)ffner stretcher is further broadened to above 200ps,which matches the amplification windows of the signal pulses in OPCPA and is suitable for use as a pump source in the OPCPA system.The bandwidth of the amplified pulse is 1.5 nm,and an output energy of 2mJ is achieved at a repetition rate of 10 Hz.Optical parametric chirped pulse amplification (OPCPA)[1-4] has attracted a great deal of attention as the most promising technique for generating ultrashort ultrahigh-peak-power laser pulses because of its very broad gain bandwidth,negligible thermal load on the nonlinear crystal,and extremely high singlepass gain as compared to amplifiers based on laser gain media.For efficient amplification and high fidelity of dispersion compensation in OPCPA,a femtosecond seed pulse is first stretched to several tens of picoseconds with a bulk grating stretcher or a fiber stretcher.%A high-average-power diode-pumped narrowband regenerative chirped pulse amplifier is developed using the thin-rod Nd:YAG laser architecture for optical parametric chirped-pulse amplification (OPCPA). The effect of the etalons on the amplified pulse in the regenerative cavity is studied experimentally and theoretically. By inserting glass etalons of thickness 1 mm and 5 mm into the regenerative cavity, the pre-stretching pulse from an (O)finer stretcher is further broadened to above 200 ps, which matches the amplification windows of the signal pulses in OPCPA and is suitable for use as a pump source in the OPCPA system. The bandwidth of the amplified pulse is 1.5 nm, and an

  19. Demonstration of a double chirped-pulse-amplification front-end system to improve the temporal contrast at a sub-petawatt laser

    Science.gov (United States)

    Xie, Na; Zhou, Kainan; Huang, Wanqing; Wang, Xiaodong; Sun, Li; Guo, Yi; Li, Qing

    2012-02-01

    The temporal contrast is an important factor affecting the application of ultra-intense and ultra-short lasers. In this paper, we develop a double chirped-pulse-amplification (CPA) front-end system with an intermediate nonlinear temporal pulse filter to improve the temporal contrast at a sub-petawatt Ti:sapphire laser facility, i.e. the super intense laser for experiment on the extremes (SILEX-I). The temporal pulse filter employs cross-polarized wave (XPW) generation to suppress the amplified spontaneous emission (ASE). The design output energy is 320 mJ for the front-end system. The experimental results show that the output energy of the double CPA system is 360 mJ. The ASE pedestal is suppressed significantly and the temporal contrast is improved by around three orders of magnitude.

  20. Mismatch characteristics of optical parametric chirped pulse amplification

    International Nuclear Information System (INIS)

    The stability of an optical parametric chirped pulse amplifier (OPCPA) is influenced by time and the angular matching of the input beams. We derived the Gaussian dependence of the monochromatic signal gain on the small mismatch between the signal and pump beams. Gain characteristics were also calculated for polychromatic amplification and the impact of different beam mismatches and interaction geometries was explained. The asymmetry of the energy gain, and the square root dependence of the phase matched wavelength on beam angles were found. The predicted dependences were verified in a noncollinear OPCPA system with LBO and KDP crystal amplifying pulses of a Ti:sapphire laser around a central wavelength of 800 nm, pumped by the third harmonic frequency of an iodine gas laser at a wavelength of 438 nm. The widths of the gain curves in the dependence on both the pump–signal or the phase matching angles varied from several tenths to a few milliradians. The gain curve widths dependent on the pump–signal pulse delay were about two thirds of the pump pulse width for moderate pumping and about a half of the pump pulse width for pumping on the order of GW cm−2. A stable gain output is achieved if angular and temporal fluctuations are fractions of the measured gain curve widths, and when the signal direction is between the pump and the crystal principal axis (i.e. in the psz geometry). (letter)

  1. Mismatch characteristics of optical parametric chirped pulse amplification

    Science.gov (United States)

    Novák, O.; Turčičová, H.; Divoký, M.; Huynh, J.; Straka, P.

    2014-02-01

    The stability of an optical parametric chirped pulse amplifier (OPCPA) is influenced by time and the angular matching of the input beams. We derived the Gaussian dependence of the monochromatic signal gain on the small mismatch between the signal and pump beams. Gain characteristics were also calculated for polychromatic amplification and the impact of different beam mismatches and interaction geometries was explained. The asymmetry of the energy gain, and the square root dependence of the phase matched wavelength on beam angles were found. The predicted dependences were verified in a noncollinear OPCPA system with LBO and KDP crystal amplifying pulses of a Ti:sapphire laser around a central wavelength of 800 nm, pumped by the third harmonic frequency of an iodine gas laser at a wavelength of 438 nm. The widths of the gain curves in the dependence on both the pump-signal or the phase matching angles varied from several tenths to a few milliradians. The gain curve widths dependent on the pump-signal pulse delay were about two thirds of the pump pulse width for moderate pumping and about a half of the pump pulse width for pumping on the order of GW cm-2. A stable gain output is achieved if angular and temporal fluctuations are fractions of the measured gain curve widths, and when the signal direction is between the pump and the crystal principal axis (i.e. in the psz geometry).

  2. Hybrid master oscillator power amplifier system providing 10 mJ, 32 W, and 50 MW pulses for optical parametric chirped-pulse amplification pumping

    International Nuclear Information System (INIS)

    We present a high-energy, high-average-power picosecond laser system based on a hybrid chain in a master oscillator power amplifier configuration. The chain is seeded by a Ti:sapphire oscillator, followed by a Yb doped fiber preamplifier, a Nd:YAG-based regenerate amplifier, and a Nd:YVO4-based single-pass amplifier. The final diode-pumped, solid-state amplifier is detailed and produces pulses with more than 10 mJ energy at 32 W average power with 207 ps duration, corresponding to 50 MW peak power. The picosecond pulse output is seeded and optically synchronized with the sub-5-fs oscillator for optical parametric chirped-pulse amplification pumping. (authors)

  3. Trends in ultrashort and ultrahigh power laser pulses based on optical parametric chirped pulse amplification

    International Nuclear Information System (INIS)

    Since the proof-of-principle demonstration of optical parametric amplification to efficiently amplify chirped laser pulses in 1992, optical parametric chirped pulse amplification (OPCPA) became the most promising method for the amplification of broadband optical pulses. In the meantime, we are witnessing an exciting progress in the development of powerful and ultrashort pulse laser systems that employ chirped pulse parametric amplifiers. The output power and pulse duration of these systems have ranged from a few gigawatts to hundreds of terawatts with a potential of tens of petawatts power level. Meanwhile, the output pulse duration based on optical parametric amplification has entered the range of few-optical-cycle field. In this paper, we overview the basic principles, trends in development, and current state of the ultrashort and laser systems based on OPCPA, respectively. (paper)

  4. Optimization of Pulse Temporal Contrast in Optical Parametric Chirped Pulse Amplification

    Institute of Scientific and Technical Information of China (English)

    WANG Yan-Hai; PAN Xue; LI Xue-Chun; LIN Zun-Qi

    2009-01-01

    In optical parametric chirped pulse amplification (OPCPA), the degradation of temporal contrast of the com-pressed signal pulse mainly results from spectral clipping in the grating stretcher with finite size of the optics, parametric fluorescence (PF) and the spectral variations transferred from temporal fluctuation of the pump pulse. The temporal contrast of the recompressed amplified pulse in the OPCPA system is studied numerically and a number of solutions are considered and optimized to achieve the highest temporal contrast.

  5. Fiber Optical Parametric Chirped Pulse Amplification of Sub-Picosecond Pulses

    DEFF Research Database (Denmark)

    Cristofori, Valentina; Lali-Dastjerdi, Zohreh; Da Ros, Francesco;

    2013-01-01

    We demonstrate experimentally, for the first time to our knowledge, fiber optical parametric chirped pulse amplification of 400-fs pulses. The 400-fs signal is stretched, amplified by 26 dB and compressed back to 500 fs.......We demonstrate experimentally, for the first time to our knowledge, fiber optical parametric chirped pulse amplification of 400-fs pulses. The 400-fs signal is stretched, amplified by 26 dB and compressed back to 500 fs....

  6. Optimal control of quantum systems by chirped pulses

    DEFF Research Database (Denmark)

    Amstrup, Bjarne; Doll, J. D.; Sauerbrey, R. A.;

    1993-01-01

    Research on optimal control of quantum systems has been severely restricted by the lack of experimentally feasible control pulses. Here, to overcome this obstacle, optimal control is considered with the help of chirped pulses. Simulated annealing is used as the optimizing procedure. The examples...

  7. Experimental and Theoretical Analysis of Nondegenerate Ultrabroadband Chirped Pulse Optical Parametric Amplification

    Institute of Scientific and Technical Information of China (English)

    刘红军; 赵卫; 陈国夫; 王屹山; 于连君; 阮驰; 卢克清

    2004-01-01

    Experimental investigations of nondegenerate ultrabroadband chirped pulse optical parametric amplification have been carried out. The general mathematical expressions for evaluating parametric bandwidth, gain and gain bandwidth for arbitrary three-wave mixing parametric amplifiers are presented. In our experiments, a type-I noncollinear phase-matched optical parametric amplifier based on lithium triborate, which was pumped by a 5-ns second harmonic pulses from a Q-switched Nd:YAG operating at 10 Hz, seeded by a 14-rs Ti:sapphire laser at 800nm, was presented. The 0.85nJ energy of input chirped signal pulse with 57-FWHM has been amplified to 3.1 μJ at pump intensity 3 G W/cm2, the corresponding parametric gain reached 3.6 × 103, the 53 nm-FWHM gain spectrum bandwidth of output signal has been obtained. The large gain and broad gain bandwidth, which have been confirmed experimentally, provide great potentials to amplify efficiently the broad bandwidth femtosecond light pulses to generate new extremes in power, intensity, and pulse duration using optical parametric chirped pulse amplifiers pumped by powerful nanosecond systems.

  8. Flashlamp pumped Ti-sapphire laser for ytterbium glass chirped pulse amplification

    Energy Technology Data Exchange (ETDEWEB)

    Nishimura, Akihiko; Ohzu, Akira; Sugiyama, Akira [Japan Atomic Energy Research Inst., Tokai, Ibaraki (Japan). Tokai Research Establishment] [and others

    1998-03-01

    A flashlamp pumped Ti:sapphire laser is designed for ytterbium glass chirped pulse amplification. A high quality Ti:sapphire rod and a high energy long pulse discharging power supply are key components. The primary step is to produce the output power of 10 J per pulse at 920 nm. (author)

  9. Energy and average power scalable optical parametric chirped-pulse amplification in yttrium calcium oxyborate.

    Science.gov (United States)

    Liao, Zhi M; Jovanovic, Igor; Ebbers, Chris A; Fei, Yiting; Chai, Bruce

    2006-05-01

    Optical parametric chirped-pulse amplification (OPCPA) in nonlinear crystals has the potential to produce extremes of peak and average power but is limited either in energy by crystal growth issues or in average power by crystal thermo-optic characteristics. Recently, large (7.5 cm diameter x 25 cm length) crystals of yttrium calcium oxyborate (YCOB) have been grown and utilized for high-average-power second-harmonic generation. Further, YCOB has the necessary thermo-optic properties required for scaling OPCPA systems to high peak and average power operation for wavelengths near 1 microm. We report what is believed to be the first use of YCOB for OPCPA. Scalability to higher peak and average power is addressed.

  10. 90 mJ parametric chirped pulse amplification of 10 fs pulses.

    Science.gov (United States)

    Tavella, Franz; Marcinkevicius, Andrius; Krausz, Ferenc

    2006-12-25

    We demonstrate the amplification of broadband pulses from a Ti:Sapphire oscillator by non-collinear optical parametric chirped-pulse amplification technique in a type-I BBO crystal to energies of 90 mJ. Partial compression of the amplified pulses is demonstrated down to a 10 fs duration. These parameters come in combination with good spatial quality and focusability of the amplified beam.

  11. 90 mJ parametric chirped pulse amplification of 10 fs pulses.

    Science.gov (United States)

    Tavella, Franz; Marcinkevicius, Andrius; Krausz, Ferenc

    2006-12-25

    We demonstrate the amplification of broadband pulses from a Ti:Sapphire oscillator by non-collinear optical parametric chirped-pulse amplification technique in a type-I BBO crystal to energies of 90 mJ. Partial compression of the amplified pulses is demonstrated down to a 10 fs duration. These parameters come in combination with good spatial quality and focusability of the amplified beam. PMID:19532173

  12. Performance scaling via passive pulse shaping in cavity-enhanced optical parametric chirped-pulse amplification.

    Science.gov (United States)

    Siddiqui, Aleem M; Moses, Jeffrey; Hong, Kyung-Han; Lai, Chien-Jen; Kärtner, Franz X

    2010-06-15

    We show that an enhancement cavity seeded at the full repetition rate of the pump laser can automatically reshape small-signal gain across the interacting pulses in an optical parametric chirped-pulse amplifier for close-to-optimal operation, significantly increasing both the gain bandwidth and the conversion efficiency, in addition to boosting gain for high-repetition-rate amplification. Applied to a degenerate amplifier, the technique can provide an octave-spanning gain bandwidth.

  13. High contrast, 86  fs, 35  mJ pulses from a diode-pumped, Yb:glass, double-chirped-pulse amplification laser system.

    Science.gov (United States)

    Liebetrau, Hartmut; Hornung, Marco; Keppler, Sebastian; Hellwing, Marco; Kessler, Alexander; Schorcht, Frank; Hein, Joachim; Kaluza, Malte C

    2016-07-01

    We demonstrate the generation of 86 fs, 35 mJ, high-contrast laser pulses at 1030 nm with a repetition rate of 1 Hz from a diode-pumped double chirped-pulse amplification setup. The pulses exhibit a spectral bandwidth exceeding 27 nm full width at half-maximum. This could be achieved by using a laser architecture comprising two stages of chirped pulse amplification with a cross-polarized wave generation filter in between, by applying spectral shaping and by increasing the spectral hard-clip of the second stretcher. These are, to the best of our knowledge, the shortest pulses at the mJ level with ultra-high contrast generated with a diode-pumped front end at 1030 nm.

  14. Chirped pulse Raman amplification in warm plasma: towards controlling saturation.

    Science.gov (United States)

    Yang, X; Vieux, G; Brunetti, E; Ersfeld, B; Farmer, J P; Hur, M S; Issac, R C; Raj, G; Wiggins, S M; Welsh, G H; Yoffe, S R; Jaroszynski, D A

    2015-01-01

    Stimulated Raman backscattering in plasma is potentially an efficient method of amplifying laser pulses to reach exawatt powers because plasma is fully broken down and withstands extremely high electric fields. Plasma also has unique nonlinear optical properties that allow simultaneous compression of optical pulses to ultra-short durations. However, current measured efficiencies are limited to several percent. Here we investigate Raman amplification of short duration seed pulses with different chirp rates using a chirped pump pulse in a preformed plasma waveguide. We identify electron trapping and wavebreaking as the main saturation mechanisms, which lead to spectral broadening and gain saturation when the seed reaches several millijoules for durations of 10's - 100's fs for 250 ps, 800 nm chirped pump pulses. We show that this prevents access to the nonlinear regime and limits the efficiency, and interpret the experimental results using slowly-varying-amplitude, current-averaged particle-in-cell simulations. We also propose methods for achieving higher efficiencies. PMID:26290153

  15. Concepts, performance review, and prospects of table-top, few-cycle optical parametric chirped-pulse amplification

    Science.gov (United States)

    Vaupel, Andreas; Bodnar, Nathan; Webb, Benjamin; Shah, Lawrence; Richardson, Martin

    2014-05-01

    More than 20 years after the first presentation of optical parametric chirped-pulse amplification (OPCPA), the technology has matured as a powerful technique to produce high-intensity, few-cycle, and ultrashort laser pulses. The output characteristics of these systems cover a wide range of center wavelengths, pulse energies, and average powers. The current record performance of table-top, few-cycle OPCPA systems are 16 TW peak power and 22 W average power, which show that OPCPA is able to directly compete with Ti:sapphire chirped-pulse amplification-based systems as source for intense optical pulses. Here, we review the concepts of OPCPA and present the current state-of-the art performance level for several systems reported in the literature. To date, the performance of these systems is most generally limited by the employed pump laser. Thus, we present a comprehensive review on the recent progress in high-energy, high-average-power, picosecond laser systems, which provide improved performance relative to OPCPA pump lasers employed to date. From here, the impact of these novel pump lasers on table-top, few-cycle OPCPA is detailed and the prospects for next-generation OPCPA systems are discussed.

  16. High gain broadband amplification of ultraviolet pulses in optical parametric chirped pulse amplifier.

    Science.gov (United States)

    Wnuk, Paweł; Stepanenko, Yuriy; Radzewicz, Czesław

    2010-04-12

    We report on a high gain amplification of broadband ultraviolet femtosecond pulses in an optical parametric chirped pulse amplifier. Broadband ultraviolet seed pulses were obtained by an achromatic frequency doubling of the output from a femtosecond Ti:Sapphire oscillator. Stretched seed pulses were amplified in a multipass parametric amplifier with a single BBO crystal pumped by a ns frequency quadrupled Nd:YAG laser. A noncollinear configuration was used for a broadband amplification. The total (after compression) amplification of 2.510(5) was achieved, with compressed pulse energy of 30 microJ and pulse duration of 24 fs. We found that the measured gain was limited by thermal effects induced by the absorption of the pump laser by color centers created in the BBO crystal.

  17. High gain broadband amplification of ultraviolet pulses in optical parametric chirped pulse amplifier.

    Science.gov (United States)

    Wnuk, Paweł; Stepanenko, Yuriy; Radzewicz, Czesław

    2010-04-12

    We report on a high gain amplification of broadband ultraviolet femtosecond pulses in an optical parametric chirped pulse amplifier. Broadband ultraviolet seed pulses were obtained by an achromatic frequency doubling of the output from a femtosecond Ti:Sapphire oscillator. Stretched seed pulses were amplified in a multipass parametric amplifier with a single BBO crystal pumped by a ns frequency quadrupled Nd:YAG laser. A noncollinear configuration was used for a broadband amplification. The total (after compression) amplification of 2.510(5) was achieved, with compressed pulse energy of 30 microJ and pulse duration of 24 fs. We found that the measured gain was limited by thermal effects induced by the absorption of the pump laser by color centers created in the BBO crystal. PMID:20588633

  18. Spectral Phase Modulation and chirped pulse amplification in High Gain Harmonic Generation

    CERN Document Server

    Wu, Zilu; Krinsky, Sam; Loos, Henrik; Murphy, James; Shaftan, Timur; Sheehy, Brian; Shen, Yuzhen; Wang, Xijie; Yu Li Hua

    2004-01-01

    High Gain Harmonic Generation (HGHG), because it produces longitudinally coherent pulses derived from a coherent seed, presents remarkable possibilities for manipulating FEL pulses. If spectral phase modulation imposed on the seed modulates the spectral phase of the HGHG in a deterministic fashion, then chirped pulse amplification, pulse shaping, and coherent control experiments at short wavelengths become possible. In addition, the details of the transfer function will likely depend on electron beam and radiator dynamics and so prove to be a useful tool for studying these. Using the DUVFEL at the National Synchrotron Light Source at Brookhaven National Laboratory, we present spectral phase analyses of both coherent HGHG and incoherent SASE ultraviolet FEL radiation, applying Spectral Interferometry for Direct Electric Field Reconstruction (SPIDER), and assess the potential for employing compression and shaping techniques.

  19. X-ray Chirped Pulse Amplification: towards GW Soft X-ray Lasers

    Directory of Open Access Journals (Sweden)

    Marta Fajardo

    2013-07-01

    Full Text Available Extensive modeling of the seeding of plasma-based soft X-ray lasers is reported in this article. Seminal experiments on amplification in plasmas created from solids have been studied in detail and explained. Using a transient collisional excitation scheme, we show that a 18 µJ, 80 fs fully coherent pulse is achievable by using plasmas pumped by a compact 10 Hz laser. We demonstrate that direct seeding of plasmas created by nanosecond lasers is not efficient. Therefore, we propose and fully study the transposition to soft X-rays of the Chirped Pulse Amplification (CPA technique. Soft X-ray pulses with energy of 6 mJ and 200 fs duration are reachable by seeding plasmas pumped by compact 100 J, sub-ns, 1 shot/min lasers. These soft X-ray lasers would reach GW power, corresponding to an increase of 100 times as compared to the highest peak power achievable nowadays in the soft X-ray region (30 eV–1 keV. X-ray CPA is opening new horizon for soft x-ray ultra-intense sources.

  20. Dynamic Characterization of Fiber Optical Chirped Pulse Amplification for Sub-ps Pulses

    DEFF Research Database (Denmark)

    Cristofori, Valentina; Lali-Dastjerdi, Zohreh; Rishøj, Lars Søgaard;

    2013-01-01

    We investigate experimentally the propagation of sub-picosecond pulses in fiber optical parametric chirped pulse amplifiers, showing a significant broadening of the pulses from 450 fs up to 720 fs due to dispersion and self-phase modulation.......We investigate experimentally the propagation of sub-picosecond pulses in fiber optical parametric chirped pulse amplifiers, showing a significant broadening of the pulses from 450 fs up to 720 fs due to dispersion and self-phase modulation....

  1. Optical parametric chirped pulse amplification and spectral shaping of a continuum generated in a photonic band gap fiber.

    Science.gov (United States)

    Hugonnot, E; Somekh, M; Villate, D; Salin, F; Freysz, E

    2004-05-31

    A chirped pulse, spectrally broadened in a photonic bandgap optical fiber by 120 fs Ti:Sapphire laser pulses, is parametrically amplified in a BBO crystal pumped by a frequency doubled nanosecond Nd:YAG laser pulse. Without changing the frequency of the Ti:Sapphire, a spectral tunability of the amplified pulses is demonstrated. The possibility to achieve broader spectral range amplification is confirmed for a non-collinear pump-signal interaction geometry. For optimal non-collinear interaction geometry, the pulse duration of the original and amplified pulse are similar. Finally, we demonstrate that the combination of two BBO crystals makes it possible to spectrally shape the amplified pulses.

  2. Thermal Properties of Borate Crystals for High Power Optical Parametric Chirped-Pulse Amplification

    OpenAIRE

    Riedel, Robert; Rothhardt, J.; Tünnermann, A.; Prandolini, Mark; Tavella, F.; Beil, K.; Gronloh, B.; Klenke, A.; Höppner, H.; M. Schulz; Teubner, U.; Kraenkel, Christian; Limpert, J.

    2014-01-01

    The potential of borate crystals, BBO, LBO and BiBO, for high average power scaling of optical parametric chirped-pulse amplifiers is investigated. Up-to-date measurements of the absorption coefficients at 515 nm and the thermal conductivities are presented. The measured absorption coefficients are a factor of 10–100 lower than reported by the literature for BBO and LBO. For BBO, a large variation of the absorption coefficients was found between crystals from different manufacturers. The line...

  3. 200 TW 45 fs laser based on optical parametric chirped pulse amplification.

    Science.gov (United States)

    Lozhkarev, V V; Freidman, G I; Ginzburg, V N; Katin, E V; Khazanov, E A; Kirsanov, A V; Luchinin, G A; Mal'shakov, A N; Martyanov, M A; Palashov, O V; Poteomkin, A K; Sergeev, A M; Shaykin, A A; Yakovlev, I V; Garanin, S G; Sukharev, S A; Rukavishnikov, N N; Charukhchev, A V; Gerke, R R; Yashin, V E

    2006-01-01

    200 TW peak power has been achieved experimentally using a Cr:forsterite master oscillator at 1250 nm, a stretcher, three optical parametrical amplifiers based on KD*P (DKDP) crystals providing 14.5 J energy in the chirped pulse at 910 nm central wavelength, and a vacuum compressor. The final parametrical amplifier and the compressor are described in detail. Scaling of such architecture to multipetawatt power is discussed.

  4. Thermal properties of borate crystals for high power optical parametric chirped-pulse amplification.

    Science.gov (United States)

    Riedel, R; Rothhardt, J; Beil, K; Gronloh, B; Klenke, A; Höppner, H; Schulz, M; Teubner, U; Kränkel, C; Limpert, J; Tünnermann, A; Prandolini, M J; Tavella, F

    2014-07-28

    The potential of borate crystals, BBO, LBO and BiBO, for high average power scaling of optical parametric chirped-pulse amplifiers is investigated. Up-to-date measurements of the absorption coefficients at 515 nm and the thermal conductivities are presented. The measured absorption coefficients are a factor of 10-100 lower than reported by the literature for BBO and LBO. For BBO, a large variation of the absorption coefficients was found between crystals from different manufacturers. The linear and nonlinear absorption coefficients at 515 nm as well as thermal conductivities were determined for the first time for BiBO. Further, different crystal cooling methods are presented. In addition, the limits to power scaling of OPCPAs are discussed. PMID:25089381

  5. Thermal properties of borate crystals for high power optical parametric chirped-pulse amplification.

    Science.gov (United States)

    Riedel, R; Rothhardt, J; Beil, K; Gronloh, B; Klenke, A; Höppner, H; Schulz, M; Teubner, U; Kränkel, C; Limpert, J; Tünnermann, A; Prandolini, M J; Tavella, F

    2014-07-28

    The potential of borate crystals, BBO, LBO and BiBO, for high average power scaling of optical parametric chirped-pulse amplifiers is investigated. Up-to-date measurements of the absorption coefficients at 515 nm and the thermal conductivities are presented. The measured absorption coefficients are a factor of 10-100 lower than reported by the literature for BBO and LBO. For BBO, a large variation of the absorption coefficients was found between crystals from different manufacturers. The linear and nonlinear absorption coefficients at 515 nm as well as thermal conductivities were determined for the first time for BiBO. Further, different crystal cooling methods are presented. In addition, the limits to power scaling of OPCPAs are discussed.

  6. Efficient chirped-pulse amplification of sub-20 fs laser pulses

    Energy Technology Data Exchange (ETDEWEB)

    Matsuoka, Shinichi; Yamakawa, Koichi [Japan Atomic Energy Research Inst., Tokai, Ibaraki (Japan). Tokai Research Establishment

    1998-03-01

    We have developed a model for ultrabroadband and ultrashort pulse amplification including the effects of a pulse shaper for regenerative pulse shaping, gain narrowing and gain saturation in the amplifiers. Thin solid etalons are used to control both gain narrowing and gain saturation during amplification. This model has been used to design an optimized Ti:sapphire amplifier system for producing efficiently pulses of < 20-fs duration with approaching peak and average powers of 100 TW and 20 W. (author)

  7. Dynamic characterization and amplification of sub-picosecond pulses in fiber optical parametric chirped pulse amplifiers

    DEFF Research Database (Denmark)

    Cristofori, Valentina; Lali-Dastjerdi, Zohreh; Rishøj, Lars Søgaard;

    2013-01-01

    We show a first-time demonstration of amplification of 400 fs pulses in a fiber optical parametric amplifier. The 400 fs signal is stretched in time, amplified by 26 dB and compressed back to 500 fs. A significant broadening of the pulses is experimentally shown due to dispersion and limited gain...

  8. X-ray Chirped Pulse Amplification: towards GW Soft X-ray Lasers

    OpenAIRE

    Marta Fajardo; Pedro Velarde; Lu Li; David Ros; Stéphane Sebban; Eduardo Oliva; Thi Thu Thuy Le; Philippe Zeitoun

    2013-01-01

    Extensive modeling of the seeding of plasma-based soft X-ray lasers is reported in this article. Seminal experiments on amplification in plasmas created from solids have been studied in detail and explained. Using a transient collisional excitation scheme, we show that a 18 µJ, 80 fs fully coherent pulse is achievable by using plasmas pumped by a compact 10 Hz laser. We demonstrate that direct seeding of plasmas created by nanosecond lasers is not efficient. Therefore, we propose and fully st...

  9. Optimization for high-energy and high-efficiency broadband optical parametric chirped-pulse amplification in LBO near 800  nm.

    Science.gov (United States)

    Yu, Lianghong; Liang, Xiaoyan; Xu, Lu; Li, Wenqi; Peng, Chun; Hu, Zhanggui; Wang, Cheng; Lu, Xiaoming; Chu, Yuxi; Gan, Zebiao; Liu, Xiaodi; Liu, Yanqi; Wang, Xinliang; Lu, Haihe; Yin, Dingjun; Leng, Yuxin; Li, Ruxin; Xu, Zhizhan

    2015-07-15

    In this Letter, we present a study of high-energy and high-conversion-efficiency broadband optical parametric chirped-pulse amplification (OPCPA) system with a 100  mm×100  mm×17  mm LBO crystal near 800 nm. The results showed that the back-conversion was sensitively affected by the pump intensity and the injected signal intensity. It occurred when the injected signal was above 0.82 J with a pump energy of 170 J, and this effect also reshaped the amplified spectrum. After optimization, an amplified energy of 45.3 J was achieved with a conversion efficiency of 26.3% by the OPCPA. The peak power of the hybrid CPA-OPCPA laser system reached 1.02 PW with a compressed duration of 32 fs, which is the first reported OPCPA peak power higher than 1 PW, to the best of our knowledge. PMID:26176482

  10. Investigation of two-beam-pumped noncollinear optical parametric chirped-pulse amplification for the generation of few-cycle light pulses.

    Science.gov (United States)

    Herrmann, Daniel; Tautz, Raphael; Tavella, Franz; Krausz, Ferenc; Veisz, Laszlo

    2010-03-01

    We demonstrate a new and compact Phi-plane-pumped noncollinear optical parametric chirped-pulse amplification (NOPCPA) scheme for broadband pulse amplification, which is based on two-beam-pumping (TBP) at 532 nm. We employ type-I phase-matching in a 5 mm long BBO crystal with moderate pump intensities to preserve the temporal pulse contrast. Amplification and compression of the signal pulse from 675 nm - 970 nm is demonstrated, which results in the generation of 7.1-fs light pulses containing 0.35 mJ energy. In this context, we investigate the pump-to-signal energy conversion efficiency for TBP-NOPCPA and outline details for few-cycle pulse characterization. Furthermore, it is verified, that the interference at the intersection of the two pump beams does not degrade the signal beam spatial profile. It is theoretically shown that the accumulated OPA phase partially compensates for wave-vector mismatch and leads to extended broadband amplification. The experimental outcome is supported by numerical split-step simulations of the parametric signal gain, including pump depletion and parametric fluorescence.

  11. Investigation of two-beam-pumped noncollinear optical parametric chirped-pulse amplification for the generation of few-cycle light pulses.

    Science.gov (United States)

    Herrmann, Daniel; Tautz, Raphael; Tavella, Franz; Krausz, Ferenc; Veisz, Laszlo

    2010-03-01

    We demonstrate a new and compact Phi-plane-pumped noncollinear optical parametric chirped-pulse amplification (NOPCPA) scheme for broadband pulse amplification, which is based on two-beam-pumping (TBP) at 532 nm. We employ type-I phase-matching in a 5 mm long BBO crystal with moderate pump intensities to preserve the temporal pulse contrast. Amplification and compression of the signal pulse from 675 nm - 970 nm is demonstrated, which results in the generation of 7.1-fs light pulses containing 0.35 mJ energy. In this context, we investigate the pump-to-signal energy conversion efficiency for TBP-NOPCPA and outline details for few-cycle pulse characterization. Furthermore, it is verified, that the interference at the intersection of the two pump beams does not degrade the signal beam spatial profile. It is theoretically shown that the accumulated OPA phase partially compensates for wave-vector mismatch and leads to extended broadband amplification. The experimental outcome is supported by numerical split-step simulations of the parametric signal gain, including pump depletion and parametric fluorescence. PMID:20389430

  12. A chirped-pulse Fourier-transform microwave/pulsed uniform flow spectrometer. I. The low-temperature flow system.

    Science.gov (United States)

    Oldham, James M; Abeysekera, Chamara; Joalland, Baptiste; Zack, Lindsay N; Prozument, Kirill; Sims, Ian R; Park, G Barratt; Field, Robert W; Suits, Arthur G

    2014-10-21

    We report the development of a new instrument that combines chirped-pulse microwave spectroscopy with a pulsed uniform supersonic flow. This combination promises a nearly universal detection method that can deliver isomer and conformer specific, quantitative detection and spectroscopic characterization of unstable reaction products and intermediates, product vibrational distributions, and molecular excited states. This first paper in a series of two presents a new pulsed-flow design, at the heart of which is a fast, high-throughput pulsed valve driven by a piezoelectric stack actuator. Uniform flows at temperatures as low as 20 K were readily achieved with only modest pumping requirements, as demonstrated by impact pressure measurements and pure rotational spectroscopy. The proposed technique will be suitable for application in diverse fields including fundamental studies in spectroscopy, kinetics, and reaction dynamics.

  13. Selective population transfer and creation of an arbitrary superposition between quantum states in a Λ-type four-level system by a single linearly chirped pulse

    Science.gov (United States)

    Zhang, Zhenhua; Tian, Jin; Du, Juan

    2016-05-01

    We present a simple and robust way to execute selective population transfer and creation of an arbitrary superposition between quantum states in a Λ-type four-level system with doublet ground states driven by a single linearly chirped pulse. It is demonstrated that the population in the initial state can be completely and flexibly transferred to either of the target states by manipulating the chirp rate and detuning of the laser pulse. Besides, the formation of an arbitrary superposition between the initial state and either of the target states through properly changing the chirp rate and detuning is also exhibited. The results of this method can be useful for selective quantum coherent control in systems with multiple target states.

  14. Open-path quantum cascade laser-based system for simultaneous remote sensing of methane, nitrous oxide, and water vapor using chirped-pulse differential optical absorption spectroscopy

    Science.gov (United States)

    Castillo, Paulo; Diaz, Adrian; Thomas, Benjamin; Gross, Barry; Moshary, Fred

    2015-10-01

    Methane and Nitrous Oxide are long-lived greenhouse gases in the atmosphere with significant global warming effects. We report on application of chirped-pulsed quantum cascade lasers (QCLs) to simultaneous measurements of these trace gases in both open-path fence-line and backscatter systems. The intra-pulse thermal frequency chip in a QCL can be time resolved and calibrated to allow for high resolution differential optical absorption spectroscopy over the spectral window of the chip, which for a DFB-QCL can be reach ~2cm-1 for a 500 nsec pulse. The spectral line-shape of the output from these lasers are highly stable from pulse to pulse over long period of time (> 1 day), and the system does not require frequent calibrations.

  15. Chirped-pulse oscillators: a unified standpoint

    OpenAIRE

    Kalashnikov, V. L.; Apolonski, A.

    2008-01-01

    A completely analytical and unified approach to the theory of chirped-pulse oscillators is presented. The approach developed is based on the approximate integration of the generalized nonlinear complex Ginzburg-Landau equation and demonstrates that a chirped-pulse oscillator is controlled by only two parameters. It makes it easy to trace spread of the real-world characteristics of both solid-state and fiber oscillators operating in the positive dispersion regime.

  16. Decoherence control in quantum computing with simple chirped pulses

    Indian Academy of Sciences (India)

    Debabrata Goswami

    2002-08-01

    We show how the use of optimally shaped pulses to guide the time evolution of a system (‘coherent control’) can be an effective approach towards quantum computation logic. We demonstrate this with selective control of decoherence for a multilevel system with a simple linearly chirped pulse. We use a multiphoton density-matrix approach to explore the effects of ultrafast shaped pulses for two-level systems that do not have a single photon resonance, and show that many multiphoton results are surprisingly similar to the single-photon results. Finally, we choose two specific chirped pulses: one that always generates inversion and the other that always generates self-induced transparency to demonstrate an ensemble CNOT gate.

  17. FY07 LDRD Final Report Precision, Split Beam, Chirped-Pulse, Seed Laser Technology

    Energy Technology Data Exchange (ETDEWEB)

    Dawson, J W; Messerly, M J; Phan, H H; Crane, J K; Beach, R J; Siders, C W; Barty, C J

    2009-11-12

    The goal of this LDRD ER was to develop a robust and reliable technology to seed high-energy laser systems with chirped pulses that can be amplified to kilo-Joule energies and recompressed to sub-picosecond pulse widths creating extremely high peak powers suitable for petawatt class physics experiments. This LDRD project focused on the development of optical fiber laser technologies compatible with the current long pulse National Ignition Facility (NIF) seed laser. New technologies developed under this project include, high stability mode-locked fiber lasers, fiber based techniques for reduction of compressed pulse pedestals and prepulses, new compact stretchers based on chirped fiber Bragg gratings (CFBGs), new techniques for manipulation of chirped pulses prior to amplification and new high-energy fiber amplifiers. This project was highly successful and met virtually all of its goals. The National Ignition Campaign has found the results of this work to be very helpful. The LDRD developed system is being employed in experiments to engineer the Advanced Radiographic Capability (ARC) front end and the fully engineered version of the ARC Front End will employ much of the technology and techniques developed here.

  18. 2-μm wavelength, high-energy Ho:YLF chirped-pulse amplifier for mid-infrared OPCPA.

    Science.gov (United States)

    Hemmer, M; Sánchez, D; Jelínek, M; Smirnov, Vadim; Jelinkova, H; Kubeček, V; Biegert, J

    2015-02-15

    A 2-μm wavelength laser delivering up to 39-mJ energy, ∼10  ps duration pulses at 100-Hz repetition rate is reported. The system relies on chirped pulse amplification (CPA): a modelocked Er:Tm:Ho fiber-seeder is followed by a Ho:YLF-based regenerative amplifier and a cryogenically cooled Ho:YLF single pass amplifier. Stretching and compressing are performed with large aperture chirped volume Bragg gratings (CVBG). At a peak power of 3.3 GW, the stability was <1%  rms over 1 h, confirming high suitability for OPCPA and extreme nonlinear optics applications. PMID:25680122

  19. Optical parametric chirped pulse amplifier at 1600 nm with all-optical synchronization

    Directory of Open Access Journals (Sweden)

    Leitenstorfer Alfred

    2013-03-01

    Full Text Available We demonstrate the amplification of 1.6 μm pulses by a KTA optical parametric chirped-pulse amplifier based on an all-optical synchronization scheme as a scalable approach to generation of high power tunable mid infrared.

  20. Surface-reflection-initiated pulse-contrast degradation in an optical parametric chirped-pulse amplifier.

    Science.gov (United States)

    Wang, Jing; Yuan, Peng; Ma, Jingui; Wang, Yongzhi; Xie, Guoqiang; Qian, Liejia

    2013-07-01

    We study a novel mechanism of pre-pulse generation in an optical parametric chirped-pulse amplification (OPCPA) system through an analytical approach together with numerical simulations. The acquired pre-pulses are initiated from the surface-reflection-induced modulation of the seed spectrum and occur as a consequence of high-order distortion of such modulated spectrum due to the instantaneous gain saturation effect. We demonstrate that the intensities of pre-pulses increase quadratically with the initial temporal modulation-depth of the stretched signal pulse as well as the conversion efficiency prior to substantial pump-depletion. Explicit formulas for estimating the contrast limit due to surface reflections are present. We also discuss the impact of group-velocity mismatch on the pre-pulse generation. The results of this work may deepen our cognition on the complexity of the pulse-contrast problem in OPCPA systems. PMID:23842344

  1. Highly stable ultrabroadband mid-IR optical parametric chirped-pulse amplifier optimized for superfluorescence suppression.

    Science.gov (United States)

    Moses, J; Huang, S-W; Hong, K-H; Mücke, O D; Falcão-Filho, E L; Benedick, A; Ilday, F O; Dergachev, A; Bolger, J A; Eggleton, B J; Kärtner, F X

    2009-06-01

    We present a 9 GW peak power, three-cycle, 2.2 microm optical parametric chirped-pulse amplification source with 1.5% rms energy and 150 mrad carrier envelope phase fluctuations. These characteristics, in addition to excellent beam, wavefront, and pulse quality, make the source suitable for long-wavelength-driven high-harmonic generation. High stability is achieved by careful optimization of superfluorescence suppression, enabling energy scaling.

  2. Chirped pulse inverse free-electron laser vacuum accelerator

    Science.gov (United States)

    Hartemann, Frederic V.; Baldis, Hector A.; Landahl, Eric C.

    2002-01-01

    A chirped pulse inverse free-electron laser (IFEL) vacuum accelerator for high gradient laser acceleration in vacuum. By the use of an ultrashort (femtosecond), ultrahigh intensity chirped laser pulse both the IFEL interaction bandwidth and accelerating gradient are increased, thus yielding large gains in a compact system. In addition, the IFEL resonance condition can be maintained throughout the interaction region by using a chirped drive laser wave. In addition, diffraction can be alleviated by taking advantage of the laser optical bandwidth with negative dispersion focusing optics to produce a chromatic line focus. The combination of these features results in a compact, efficient vacuum laser accelerator which finds many applications including high energy physics, compact table-top laser accelerator for medical imaging and therapy, material science, and basic physics.

  3. Highly Efficient Tabletop Optical Parametric Chirped Pulse Amplifier at 1 (micron)m

    Energy Technology Data Exchange (ETDEWEB)

    Jovanovic, I.; Ebbers, C.A.; Comaskey, B.J.; Bonner, R.A.; Morse, E.C.

    2001-12-04

    Optical parametric chirped pulse amplification (OPCPA) is a scalable technology, for ultrashort pulse amplification. Its major advantages include design simplicity, broad bandwidth, tunability, low B-integral, high contrast, and high beam quality. OPCPA is suitable both for scaling to high peak power as well as high average power. We describe the amplification of stretched 100 fs oscillator pulses in a three-stage OPCPA system pumped by a commercial, single-longitudinal-mode, Q-switched Nd:YAG laser. The stretched pulses were centered around 1054 nm with a FWHM bandwidth of 16.5 nm and had an energy of 0.5 nJ. Using our OPCPA system, we obtained an amplified pulse energy of up to 31 mJ at a 10 Hz repetition rate. The overall conversion efficiency from pump to signal is 6%, which is the highest efficiency obtained With a commercial tabletop pump laser to date. The overall conversion efficiency is limited due to the finite temporal overlap of the seed (3 ns) with respect to the duration of the pump (8.5 ns). Within the temporal window of the seed pulse the pump to signal conversion efficiency exceeds 20%. Recompression of the amplified signal was demonstrated to 310 fs, limited by the aberrations initially present in the low energy seed imparted by the pulse stretcher. The maximum gain in our OPCPA system is 6 x 10{sup 7}, obtained through single passing of 40 mm of beta-barium borate. We present data on the beam quality obtained from our system (M{sup 2}=1.1). This relatively simple system replaces a significantly more complex Ti:sapphire regenerative amplifier based CPA system used in the front end of a high energy short pulse laser. Future improvement will include obtaining shorter amplified pulses and higher average power.

  4. Analysis of ultra-broadband high-energy optical parametric chirped pulse amplifier based on YCOB crystal

    Institute of Scientific and Technical Information of China (English)

    Meizhi Sun; Lailin Ji; Qunyu Bi; Nannan Wang; Jun Kang; Xinglong Xie; Zunqi Lin

    2011-01-01

    A new type of optical parametric chirped pulse amplifier is designed and analyzed for the amplification of pulse centered at 808 nm.A novel crystal,yttrium calcium oxyborate YCa4O(BO3)3 (YCOB),is utilized in the power amplification stage of optical parametric amplification (OPA).Noncollinear phase matching parameters in the xoz principle plane of YCOB,compared with those in BBO and DKDP,are analyzed by numerical simulation.The results show that YCOB rather than DKDP can be used in the power amplification stage of OPA to realize the amplification of chirped pulse to several joules with a gain bandwidth exceeding 100 nm.This can be used to gain a high intensity pulse of ~10 fs after the compressor.The amplification of the femtosecond pulse is an important branch of ultra-intense laser technology,with Ti:sapphire as the medium for its large gain bandwidth.From the perspective of technical features and applications,such femtosecond pulses are used to study high field physics and other related areas in ultrashort time[1,2];however,the pursuit of higher energy femtosecond pulse should not be abandoned.Optical parametric chirped pulse amplification (OPCPA) has been successfully used in the front end of high intensity lasers[3-8],indicating the possibility of femtosecond pulse amplification.This has been verified by an increasing number of fine crystals being invented,such as YCa4O(BO3)3 (YCOB)[9-12].%A new type of optical parametric chirped pulse amplifier is designed and analyzed for the amplification of pulse centered at 808 nm. A novel crystal, yttrium calcium oxyborate YCa4O(BO3)3 (YCOB), is utilized in the power amplification stage of optical parametric amplification (OPA). Noncollinear phase matching parameters in the xoz principle plane of YCOB, compared with those in BBO and DKDP, are analyzed by numerical simulation. The results show that YCOB rather than DKDP can be used in the power amplification stage of OPA to realize the amplification of chirped pulse to

  5. Development of optical parametric chirped-pulse amplifiers and their applications

    Energy Technology Data Exchange (ETDEWEB)

    Ishii, Nobuhisa

    2006-11-21

    In this work, optical pulse amplification by parametric chirped-pulse amplification (OPCPA) has been applied to the generation of high-energy, few-cycle optical pulses in the near-infrared (NIR) and infrared (IR) spectral regions. Amplification of such pulses is ordinarily difficult to achieve by existing techniques of pulse amplification based on standard laser gain media followed by external compression. Potential applications of few-cycle pulses in the IR have also been demonstrated. The NIR OPCPA system produces 0.5-terawatt (10 fs,5 mJ) pulses by use of noncollinearly phase-matched optical parametric amplification and a down-chirping stretcher and up-chirping compressor pair. An IR OPCPA system was also developed which produces 20-gigawatt (20 fs,350 {mu}J) pulses at 2.1 {mu}m. The IR seed pulse is generated by optical rectification of a broadband pulse and therefore it exhibits a self-stabilized carrier-envelope phase (CEP). In the IR OPCPA a common laser source is used to generate the pump and seed resulting in an inherent sub-picosecond optical synchronization between the two pulses. This was achieved by use of a custom-built Nd:YLF picosecond pump pulse amplifier that is directly seeded with optical pulses from a custom-built ultrabroadband Ti:sapphire oscillator. Synchronization between the pump and seed pulses is critical for efficient and stable amplification. Two spectroscopic applications which utilize these unique sources have been demonstrated. First, the visible supercontinuum was generated in a solid-state media by the infrared optical pulses and through which the carrier-envelope phase (CEP) of the driving pulse was measured with an f-to-3f interferometer. This measurement confirms the self-stabilization mechanism of the CEP in a difference frequency generation process and the preservation of the CEP during optical parametric amplification. Second, high-order harmonics with energies extending beyond 200 eV were generated with the few

  6. Power scaling of supercontinuum seeded megahertz-repetition rate optical parametric chirped pulse amplifiers.

    Science.gov (United States)

    Riedel, R; Stephanides, A; Prandolini, M J; Gronloh, B; Jungbluth, B; Mans, T; Tavella, F

    2014-03-15

    Optical parametric chirped-pulse amplifiers with high average power are possible with novel high-power Yb:YAG amplifiers with kW-level output powers. We demonstrate a compact wavelength-tunable sub-30-fs amplifier with 11.4 W average power with 20.7% pump-to-signal conversion efficiency. For parametric amplification, a beta-barium borate crystal is pumped by a 140 W, 1 ps Yb:YAG InnoSlab amplifier at 3.25 MHz repetition rate. The broadband seed is generated via supercontinuum generation in a YAG crystal. PMID:24690803

  7. Power scaling of supercontinuum seeded megahertz-repetition rate optical parametric chirped pulse amplifiers.

    Science.gov (United States)

    Riedel, R; Stephanides, A; Prandolini, M J; Gronloh, B; Jungbluth, B; Mans, T; Tavella, F

    2014-03-15

    Optical parametric chirped-pulse amplifiers with high average power are possible with novel high-power Yb:YAG amplifiers with kW-level output powers. We demonstrate a compact wavelength-tunable sub-30-fs amplifier with 11.4 W average power with 20.7% pump-to-signal conversion efficiency. For parametric amplification, a beta-barium borate crystal is pumped by a 140 W, 1 ps Yb:YAG InnoSlab amplifier at 3.25 MHz repetition rate. The broadband seed is generated via supercontinuum generation in a YAG crystal.

  8. Dispersion management for a sub-10-fs, 10 TW optical parametric chirped-pulse amplifier.

    Science.gov (United States)

    Tavella, Franz; Nomura, Yutaka; Veisz, Laszlo; Pervak, Vladimir; Marcinkevicius, Andrius; Krausz, Ferenc

    2007-08-01

    We report the amplification of three-cycle, 8.5 fs optical pulses in a near-infrared noncollinear optical parametric chirped-pulse amplifier (OPCPA) up to energies of 80 mJ. Improved dispersion management in the amplifier by means of a combination of reflection grisms and a chirped-mirror stretcher allowed us to recompress the amplified pulses to within 6% of their Fourier limit. The novel ultrabroad, ultraprecise dispersion control technology presented in this work opens the way to scaling multiterawatt technology to even shorter pulses by optimizing the OPCPA bandwidth.

  9. Time-Resolved Radiography using Chirp-Pulse Proton Beams

    Institute of Scientific and Technical Information of China (English)

    TENG Jian; ZHAO Zong-Qing; ZHU Bin; HONG Wei; CAO Lei-Feng; ZHOU Wei-Min; SHAN Lian-Qiang; GU Yu-Qiu

    2011-01-01

    Protons accelerated by the target normal sheath acceleration(TNSA)mechanism have a wide energy spectrum and are called chirp-pulse protons. The numerical simulation of chirp-pulse proton radiography in an implosion process with single shot is carried out using the Monte Carlo method.Two different methods are proposed.The first method, proton framing radiography ,uses a stack of radiochromic film layers as the detector. Each layer deposits protons with energy corresponding to the Bragg peak, which can record the transient state of the implosion process. The second method, proton streak radiography, uses an external magnetic field to deflect protons. Different energies correspond to different times. By using a slit before the magnetic field, one-dimensional spatial resolution and temporal resolution can be obtained. This method is more suitable for the diagnosis of the implosion process.

  10. A direct digital synthesis chirped pulse Fourier transform microwave spectrometer.

    Science.gov (United States)

    Finneran, Ian A; Holland, Daniel B; Carroll, P Brandon; Blake, Geoffrey A

    2013-08-01

    Chirped pulse Fourier transform microwave (CP-FTMW) spectrometers have become the instrument of choice for acquiring rotational spectra, due to their high sensitivity, fast acquisition rate, and large bandwidth. Here we present the design and capabilities of a recently constructed CP-FTMW spectrometer using direct digital synthesis (DDS) as a new method for chirped pulse generation, through both a suite of extensive microwave characterizations and deep averaging of the 10-14 GHz spectrum of jet-cooled acetone. The use of DDS is more suited for in situ applications of CP-FTMW spectroscopy, as it reduces the size, weight, and power consumption of the chirp generation segment of the spectrometer all by more than an order of magnitude, while matching the performance of traditional designs. The performance of the instrument was further improved by the use of a high speed digitizer with dedicated signal averaging electronics, which facilitates a data acquisition rate of 2.1 kHz.

  11. Combined Yb/Nd driver for optical parametric chirped pulse amplifiers.

    Science.gov (United States)

    Michailovas, Kirilas; Baltuska, Andrius; Pugzlys, Audrius; Smilgevicius, Valerijus; Michailovas, Andrejus; Zaukevicius, Audrius; Danilevicius, Rokas; Frankinas, Saulius; Rusteika, Nerijus

    2016-09-19

    We report on the developed front-end/pump system for optical parametric chirped pulse amplifiers. The system is based on a dual output fiber oscillator/power amplifier which seeds and assures all-optical synchronization of femtosecond Yb and picosecond Nd laser amplifiers operating at a central wavelength of 1030 nm and 1064 nm, respectively. At the central wavelength of 1030 nm, the fiber oscillator generates partially stretched 4 ps pulses with the spectrum supporting a scaling currently is prevented by limited dimensions of the diffraction gratings, which, because of the fast progress in MLD grating manufacturing technologies is only a temporary obstacle.

  12. Cpuf: Chirped-Pulse Microwave Spectroscopy in Pulsed Uniform Supersonic Flows

    Science.gov (United States)

    Suits, Arthur; Abeysekera, Chamara; Zack, Lindsay N.; Joalland, Baptiste; Ariyasingha, Nuwandi M.; Park, Barratt; Field, Robert W.; Sims, Ian

    2015-06-01

    Chirped-pulse Fourier-transform microwave spectroscopy has stimulated a resurgence of interest in rotational spectroscopy owing to the dramatic reduction in spectral acquisition time it enjoys when compared to cavity-based instruments. This suggests that it might be possible to adapt the method to study chemical reaction dynamics and even chemical kinetics using rotational spectroscopy. The great advantage of this would be clear, quantifiable spectroscopic signatures for polyatomic products as well as the possibility to identify and characterize new radical reaction products and transient intermediates. To achieve this, however, several conditions must be met: 1) products must be thermalized at low temperature to maximize the population difference needed to achieve adequate signal levels and to permit product quantification based on the rotational line strength; 2) a large density and volume of reaction products is also needed to achieve adequate signal levels; and 3) for kinetics studies, a uniform density and temperature is needed throughout the course of the reaction. These conditions are all happily met by the uniform supersonic flow produced from a Laval nozzle expansion. In collaboration with the Field group at MIT we have developed a new instrument we term a CPUF (Chirped-pulse/Uniform Flow) spectrometer in which we can study reaction dynamics, photochemistry and kinetics using broadband microwave and millimeter wave spectroscopy as a product probe. We will illustrate the performance of the system with a few examples of photodissociation and reaction dynamics, and also discuss a number of challenges unique to the application of chirped-pulse microwave spectroscopy in the collisional environment of the flow. Future directions and opportunities for application of CPUF will also be explored.

  13. Plasma absorption evidence via chirped pulse spectral transmission measurements

    Energy Technology Data Exchange (ETDEWEB)

    Jedrkiewicz, Ottavia, E-mail: ottavia.jedrkiewicz@ifn.cnr.it [Istituto di Fotonica e Nanotecnologie, CNR and CNISM UdR Como, Via Valleggio 11, I-22100 Como (Italy); Minardi, Stefano [Institute of Applied Physics, Friedrich-Schiller-University Jena, Max-Wien-Platz 1, 07743 Jena (Germany); Couairon, Arnaud; Jukna, Vytautas [Centre de Physique Theorique, CNRS, Ecole Polytechnique, F-91128 Palaiseau (France); Selva, Marco; Di Trapani, Paolo [Dipartimento di Scienza e Alta Tecnologia, University of Insubria and CNISM UdR Como, Via Valleggio 11, I-22100 Como (Italy)

    2015-06-08

    This work aims at highlighting the plasma generation dynamics and absorption when a Bessel beam propagates in glass. We developed a simple diagnostics allowing us to retrieve clear indications of the formation of the plasma in the material, thanks to transmission measurements in the angular and wavelength domains. This technique featured by the use of a single chirped pulse having the role of pump and probe simultaneously leads to results showing the plasma nonlinear absorption effect on the trailing part of the pulse, thanks to the spectral-temporal correspondence in the measured signal, which is also confirmed by numerical simulations.

  14. Factorization of numbers using chirped pulses

    International Nuclear Information System (INIS)

    Full text: In this work we present a physical system that combines wavepacket dynamics and number theory. It has been shown that Gauss-sums, which involve quadratic phase factors, may be utilized to obtain the prime factor components of a given number N. As the physical system we choose a two-photon transition which is driven by a chirped laser pulse. In addition to a ground and an excited state the underlying level scheme contains a harmonic manifold of intermediate states. Quantum interference of multiple excitation paths is the key mechanism of this factorization scheme. We show how quadratic phase factors enter and present a recipe to encode the number N and reveal its prime components. Refs. 2 (author)

  15. Pulse compression and beam focusing with segmented diffraction gratings in a high-power chirped-pulse amplification glass laser system

    OpenAIRE

    Habara, Hideaki; Xu, Guang; Jitsuno, Takahisa; Kodama, Ryosuke; Suzuki, Kenji; Sawai, Kiyonobu; Kondo, Kiminori; Miyanaga, Noriaki; Tanaka, Kazuo A.; Mima, Kunioki; Rushford, Michael C.; Britten, Jerald A.; Barty, Christopher P.J.

    2010-01-01

    This paper was published in Optics Letters and is made available as an electronic reprint with the permission of OSA. The paper can be found at the following URL on the OSA website: http://dx.doi.org/10.1364/OL.35.001783 Systematic or multiple reproduction or distribution to multiple locations via electronic or other means is prohibited and is subject to penalties under law.

  16. Coherent chirped pulse laser network with Mickelson phase-conjugator

    CERN Document Server

    Okulov, A Yu

    2013-01-01

    The mechanisms of nonlinear phase-locking of a large fiber amplifier array are analyzed. The preference is given to configuration most suitable for a coherent coupling of a thousands of a fundamental spatial mode fiber beams into a single smooth beam ready for chirped pulse compression. It is shown that Michelson phase conjugating configuration with double passage through array of fiber amplifiers have the definite advantages compared to one-way fiber array coupled in a Mach-Zehnder configuration. Regardless to amount of synchronized fiber amplifiers Michelson phase-conjugating interferometer is expected to do a perfect compensation of the phase-piston errors and collimation of backwardly amplified fiber beams on entrance/output beamsplitter. In both configurations the nonlinear transformation of the stretched pulse envelope due to gain saturation is capable to randomize the position of chirp inside envelope thus it may reduce the visibility of interference pattern at output beamsplitter. A certain advantages...

  17. Pulse distortion in single-mode fibers. 3: Chirped pulses.

    Science.gov (United States)

    Marcuse, D

    1981-10-15

    The theory of pulse distortion in single-mode fibers is extended to include laser sources that suffer a linear wavelength sweep (chirp) during the duration of the pulse. The transmitted pulse is expressed as a Fourier integral whose spectral function is given by an analytical expression in closed form. The rms width of the transmitted pulse is also expressed in closed form. Numerical examples illustrate the influence of the chirp on the shape and rms width of the pulse. A somewhat paradoxical situation exists. A given input pulse can be made arbitrarily short by a sufficiently large amount of chirping, and, after a given fiber length, this chirped pulse returns to its original width. But at this particular distance an unchirped pulse would be only [equiation] times longer. Thus chirping can improve the rate of data transmission by only 40%.

  18. Pulse distortion in single-mode fibers. 3: Chirped pulses.

    Science.gov (United States)

    Marcuse, D

    1981-10-15

    The theory of pulse distortion in single-mode fibers is extended to include laser sources that suffer a linear wavelength sweep (chirp) during the duration of the pulse. The transmitted pulse is expressed as a Fourier integral whose spectral function is given by an analytical expression in closed form. The rms width of the transmitted pulse is also expressed in closed form. Numerical examples illustrate the influence of the chirp on the shape and rms width of the pulse. A somewhat paradoxical situation exists. A given input pulse can be made arbitrarily short by a sufficiently large amount of chirping, and, after a given fiber length, this chirped pulse returns to its original width. But at this particular distance an unchirped pulse would be only [equiation] times longer. Thus chirping can improve the rate of data transmission by only 40%. PMID:20372221

  19. High peak-power monolithic femtosecond ytterbium fiber chirped pulse amplifier with a spliced-on hollow core fiber compressor.

    Science.gov (United States)

    Verhoef, A J; Jespersen, K; Andersen, T V; Grüner-Nielsen, L; Flöry, T; Zhu, L; Baltuška, A; Fernández, A

    2014-07-14

    We demonstrate a monolithic Yb-fiber chirped pulse amplifier that uses a dispersion matched fiber stretcher and a spliced-on hollow core photonic bandgap fiber compressor. For an output energy of 77 nJ, 220 fs pulses with 92% of the energy contained in the main pulse, can be obtained with minimal nonlinearities in the system. 135 nJ pulses are obtained with 226 fs duration and 82 percent of the energy in the main pulse. Due to the good dispersion match of the stretcher to the hollow core photonic bandgap fiber compressor, the duration of the output pulses is within 10% of the Fourier limited duration. PMID:25090494

  20. A chirped-pulse Fourier-transform microwave/pulsed uniform flow spectrometer. II. Performance and applications for reaction dynamics.

    Science.gov (United States)

    Abeysekera, Chamara; Zack, Lindsay N; Park, G Barratt; Joalland, Baptiste; Oldham, James M; Prozument, Kirill; Ariyasingha, Nuwandi M; Sims, Ian R; Field, Robert W; Suits, Arthur G

    2014-12-01

    This second paper in a series of two reports on the performance of a new instrument for studying chemical reaction dynamics and kinetics at low temperatures. Our approach employs chirped-pulse Fourier-transform microwave (CP-FTMW) spectroscopy to probe photolysis and bimolecular reaction products that are thermalized in pulsed uniform flows. Here we detail the development and testing of a new K(a)-band CP-FTMW spectrometer in combination with the pulsed flow system described in Paper I [J. M. Oldham, C. Abeysekera, B. Joalland, L. N. Zack, K. Prozument, I. R. Sims, G. B. Park, R. W. Field, and A. G. Suits, J. Chem. Phys. 141, 154202 (2014)]. This combination delivers broadband spectra with MHz resolution and allows monitoring, on the μs timescale, of the appearance of transient reaction products. Two benchmark reactive systems are used to illustrate and characterize the performance of this new apparatus: the photodissociation of SO2 at 193 nm, for which the vibrational populations of the SO product are monitored, and the reaction between CN and C2H2, for which the HCCCN product is detected in its vibrational ground state. The results show that the combination of these two well-matched techniques, which we refer to as chirped-pulse in uniform flow, also provides insight into the vibrational and rotational relaxation kinetics of the nascent reaction products. Future directions are discussed, with an emphasis on exploring the low temperature chemistry of complex polyatomic systems.

  1. Femtosecond wavelength-tunable OPCPA system based on picosecond fiber laser seed and picosecond DPSS laser pump.

    Science.gov (United States)

    Danilevičius, R; Zaukevičius, A; Budriūnas, R; Michailovas, A; Rusteika, N

    2016-07-25

    We present a compact and stable femtosecond wavelength-tunable optical parametric chirped pulse amplification (OPCPA) system. A novel OPCPA front-end was constructed using a multi-channel picosecond all-in-fiber source for seeding DPSS pump laser and white light supercontinuum generation. Broadband chirped pulses were parametrically amplified up to 1 mJ energy and compressed to less than 40 fs duration. Pulse wavelength tunability in the range from 680 nm to 930 nm was experimentally demonstrated. PMID:27464199

  2. Numerical simulation of extremely chirped pulse formation with an optical fiber

    Energy Technology Data Exchange (ETDEWEB)

    Itoh, Tamitake; Nishimura, Akihiko; Tei, Kazuyoku; Matoba, Tohru; Takuma, Hiroshi [Japan Atomic Energy Research Inst., Tokai, Ibaraki (Japan). Tokai Research Establishment; Yamashita, Mikio; Morita, Ryuji

    1998-03-01

    A nonlinear propagation code which used a symmetric split-step Fourier method as an algorithm was improved to simulate a propagation behavior of extremely chirped pulse in a long fiber. The performances of pulse propagation in noble gases cored hollow fibers and a pulse stretcher using a nonlinear and normal silicate fibers have been simulated by the code. The calculation results in the case of the hollow fiber are consistent with their experimental results. We estimated that this pulse stretcher could give a extremely chirped pulse whose spectral width was 84.2 nm and temporal duration was 1.5 ns. (author)

  3. Femtosecond pulse amplification in cladding-pumped fibers

    OpenAIRE

    Minelly, J. D.; Galvanauskas, A.; Fermann, M. E.; Harter, D.; Caplen, J.E.; Chen, Z.J.; Payne, D. N.

    1995-01-01

    Femtosecond pulse amplification in a cladding-pumped fiber amplifier is demonstrated for the first time to our knowledge. Using a cladding-pumped erbium-doped fiber power amplifier and a passively mode-locked fiber seed oscillator in conjunction with an all-fiber chirped-pulse amplification system, we obtain 380-fs near-bandwidth-limited pulses with an average power of 260 mW. The pulse repetition rate is varied between 5 and 50 MHz, and pulse energies as high as 20 nJ are generated.

  4. Subpicosecond fiber optical parametric chirped pulse amplifier based on highly-nonlinear fiber

    OpenAIRE

    Chui, PC; Wong, KKY; Zhou, Y.; Q. Li; Cheung, KKY; Yang, S.

    2010-01-01

    We experimentally demonstrate a fiber optical parametric chirped pulse amplifier. A 750-fs signal is stretched to 40 ps, amplified with a gain of 30 dB through parametric process and then compressed to 808 fs. 2010 Optical Society of America. © 2010 IEEE.

  5. Perspective: The first ten years of broadband chirped pulse Fourier transform microwave spectroscopy.

    Science.gov (United States)

    Park, G Barratt; Field, Robert W

    2016-05-28

    Since its invention in 2006, the broadband chirped pulse Fourier transform spectrometer has transformed the field of microwave spectroscopy. The technique enables the collection of a ≥10 GHz bandwidth spectrum in a single shot of the spectrometer, which allows broadband, high-resolution microwave spectra to be acquired several orders of magnitude faster than what was previously possible. We discuss the advantages and challenges associated with the technique and look back on the first ten years of chirped pulse Fourier transform spectroscopy. In addition to enabling faster-than-ever structure determination of increasingly complex species, the technique has given rise to an assortment of entirely new classes of experiments, ranging from chiral sensing by three-wave mixing to microwave detection of multichannel reaction kinetics. However, this is only the beginning. Future generations of microwave experiments will make increasingly creative use of frequency-agile pulse sequences for the coherent manipulation and interrogation of molecular dynamics.

  6. Perspective: The first ten years of broadband chirped pulse Fourier transform microwave spectroscopy

    Science.gov (United States)

    Park, G. Barratt; Field, Robert W.

    2016-05-01

    Since its invention in 2006, the broadband chirped pulse Fourier transform spectrometer has transformed the field of microwave spectroscopy. The technique enables the collection of a ≥10 GHz bandwidth spectrum in a single shot of the spectrometer, which allows broadband, high-resolution microwave spectra to be acquired several orders of magnitude faster than what was previously possible. We discuss the advantages and challenges associated with the technique and look back on the first ten years of chirped pulse Fourier transform spectroscopy. In addition to enabling faster-than-ever structure determination of increasingly complex species, the technique has given rise to an assortment of entirely new classes of experiments, ranging from chiral sensing by three-wave mixing to microwave detection of multichannel reaction kinetics. However, this is only the beginning. Future generations of microwave experiments will make increasingly creative use of frequency-agile pulse sequences for the coherent manipulation and interrogation of molecular dynamics.

  7. Compression and collisions of chirped pulses in a dense two-level medium

    OpenAIRE

    Novitsky, Denis

    2015-01-01

    Using numerical simulations, we study propagation of linearly-chirped optical pulses in a homogeneously broadened two-level medium. We pay attention to the three main topics -- validity of the rotating-wave approximation (RWA), pulse compression, and collisions of counter-propagating pulses. The cases of long and single-cycle pulses are considered and compared with each other. We show that the RWA does not give a correct description of chirped pulse interaction with the medium. The compressio...

  8. Spectral property of ultrashort chirped pulsed Gaussian beams diffracted by Gaussian aperture in dispersive media

    Science.gov (United States)

    Zou, Qihui; Hu, Qianhuan; Guo, Jie; Duan, Xi; Tong, Shihong

    2015-10-01

    Based on the Fresnel-Kirchhoff diffraction integral and Fourier transform, the propagation equation and its Fourier spectrum for ultra-short chirped pulsed Gaussian beams diffracted by Gaussian aperture are derived in dispersive medium, and the frequency-domain analytical electric field are presented. The effects of relative aperture, transmission distance and chirp parameter on the axial spectral properties are illustrated with numerical calculation results, and the variations of off-axis power spectrum with relative aperture, transmission distance and off-axis radius are given. It is found that the axial power spectrum of ultra-short chirped pulsed Gaussian increases with increasing relative aperture, the axial spectral blue-shift increases and approaches an asymptotic value associated with chirp parameter and propagation distance. The axial spectra of ultra-short chirped pulsed Gaussian become broadened with increasing the absolute value of the chirp parameter. With increasing off-axis radius, the off-axis power spectrum reduce rapidly, and the distribution of spectra shifts to the left. The off-axis spectral redshift increases with increasing off-axis radius.

  9. High-average-power 2 μm few-cycle optical parametric chirped pulse amplifier at 100 kHz repetition rate.

    Science.gov (United States)

    Shamir, Yariv; Rothhardt, Jan; Hädrich, Steffen; Demmler, Stefan; Tschernajew, Maxim; Limpert, Jens; Tünnermann, Andreas

    2015-12-01

    Sources of long wavelengths few-cycle high repetition rate pulses are becoming increasingly important for a plethora of applications, e.g., in high-field physics. Here, we report on the realization of a tunable optical parametric chirped pulse amplifier at 100 kHz repetition rate. At a central wavelength of 2 μm, the system delivered 33 fs pulses and a 6 W average power corresponding to 60 μJ pulse energy with gigawatt-level peak powers. Idler absorption and its crystal heating is experimentally investigated for a BBO. Strategies for further power scaling to several tens of watts of average power are discussed. PMID:26625047

  10. High-average-power 2 μm few-cycle optical parametric chirped pulse amplifier at 100 kHz repetition rate.

    Science.gov (United States)

    Shamir, Yariv; Rothhardt, Jan; Hädrich, Steffen; Demmler, Stefan; Tschernajew, Maxim; Limpert, Jens; Tünnermann, Andreas

    2015-12-01

    Sources of long wavelengths few-cycle high repetition rate pulses are becoming increasingly important for a plethora of applications, e.g., in high-field physics. Here, we report on the realization of a tunable optical parametric chirped pulse amplifier at 100 kHz repetition rate. At a central wavelength of 2 μm, the system delivered 33 fs pulses and a 6 W average power corresponding to 60 μJ pulse energy with gigawatt-level peak powers. Idler absorption and its crystal heating is experimentally investigated for a BBO. Strategies for further power scaling to several tens of watts of average power are discussed.

  11. Ultrabroadband noncollinear optical parametric amplification with LBO crystal.

    Science.gov (United States)

    Zhao, Baozhen; Jiang, Yongliang; Sueda, Keiich; Miyanaga, Noriaki; Kobayashi, Takayoshi

    2008-11-10

    Ultrabroadband visible noncollinear optical parametric amplification (NOPA) was achieved in an LBO crystal, with a continuum seed pulse generated from a sapphire plate. The spectral bandwidth of the amplified visible pulse was about 200 nm, which can support sub-5 fs pulse amplification. An amplified output of 0.21 microJ with an average gain of about 210 was achieved. This provides, to the best of our knowledge, the first-time demonstration of such broadband amplification with a biaxial nonlinear optical crystal. Both the simulation and experimental results indicate that the LBO has a great potential as nonlinear medium in power amplifier for TW to PW noncollinear optical parametric chirped pulse amplification (NOPCPA) systems. PMID:19581976

  12. Shock-Accelerated Flying Foil Diagnostic with a Chirped Pulse Spectral Interferometry

    Institute of Scientific and Technical Information of China (English)

    陈建平; 李儒新; 曾志男; 王兴涛; 程传福; 徐至展

    2003-01-01

    A shock-accelerated flying foil is diagnosed with a chirped pulse spectral interferometry. The shock is pumped by a 1.2ps chirped laser pulse with a power of~1014 W/cm2 at 785nm irradiating on a 500nm aluminium film and detected by a probe pulse split from the pump based on a Michelson spectral interferometry. A flying foil of~5.595×10-6 g in~400 μm diameter was accelerated to~165 nm away from the initial target rear surface at~1.83 km/s before ablation.

  13. Chirped pulse reflectivity and frequency domain interferometry in laser driven shock experiments.

    Science.gov (United States)

    Benuzzi-Mounaix, A; Koenig, M; Boudenne, J M; Hall, T A; Batani, D; Scianitti, F; Masini, A; Di Santo, D

    1999-09-01

    We show the simultaneous applicability of the frequency domain interferometry and the chirped pulse reflectometry techniques to measure shock parameters. The experiment has been realized with the laser at the Laboratoire pour l'Utilisation des Lasers Intenses (LULI) with a 550-ps pulse duration and an intensity on target approximately 5 x 10(13) W/cm(2) to produce a shock in a layered aluminum-fused silica target. A second low energy, partially compressed chirped probe beam was used to irradiate the target rear side and the reflected light has been analyzed with a spectrometer, achieving a temporal resolution of the order of 1 ps. PMID:11970183

  14. Chirped pulse reflectivity and frequency domain interferometry in laser driven shock experiments

    Science.gov (United States)

    Benuzzi-Mounaix, A.; Koenig, M.; Boudenne, J. M.; Hall, T. A.; Batani, D.; Scianitti, F.; Masini, A.; di Santo, D.

    1999-09-01

    We show the simultaneous applicability of the frequency domain interferometry and the chirped pulse reflectometry techniques to measure shock parameters. The experiment has been realized with the laser at the Laboratoire pour l'Utilisation des Lasers Intenses (LULI) with a 550-ps pulse duration and an intensity on target ~5×1013 W/cm2 to produce a shock in a layered aluminum-fused silica target. A second low energy, partially compressed chirped probe beam was used to irradiate the target rear side and the reflected light has been analyzed with a spectrometer, achieving a temporal resolution of the order of 1 ps.

  15. Single quantum path control by a fundamental chirped pulse combined with a subharmonic control pulse

    Energy Technology Data Exchange (ETDEWEB)

    Feng, Liqiang [State Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023 (China); Chu, Tianshu, E-mail: tschu008@163.com [State Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023 (China); Institute for Computational Sciences and Engineering, Laboratory of New Fiber Materials and Modern Textile, The Growing Base for State Key Laboratory, Qingdao University, Qingdao 266071 (China)

    2012-11-15

    Highlights: Black-Right-Pointing-Pointer HHG spectra and attosecond pulse generation from a model He atom. Black-Right-Pointing-Pointer Two-color laser field of a chirped fundamental pulse and a subharmonics control pulse. Black-Right-Pointing-Pointer Single quantum path selection by {beta} = 4.55 chirp pulse and the zero-phase 2000 nm control pulse. Black-Right-Pointing-Pointer Formation of 337 eV supercontinuum region and generation of 39 as pulse. -- Abstract: In this paper, we study the issue of single quantum path control and its role in attosecond pulse generation. By carrying out the time-dependent Schroedinger equation analysis for the harmonic emission from a single He atom irradiated by the two-color laser field, consisting of a short 800 fundamental chirped pulse and a subharmonic 800-2400 nm control pulse, we find that the most favorable condition for attosecond generation is at the fundamental chirp parameter {beta} = 4.55 together with the zero-phase 2000 nm control pulse, in which the single quantum path (short quantum path) is selected to contribute to the harmonic spectrum exhibiting an ultrabroad supercontinuum of a 337 eV bandwidth. Finally, an isolated attosecond pulse as short as 39 as is thus generated directly.

  16. Characteristics of spatial modulation in nonlinear propagation of broad-band lasers stacked by chirped pulses

    International Nuclear Information System (INIS)

    To identify the potential risks of spatial modulation of broad-band laser beams stacked by chirped pulses on the safety of optics, this paper numerically investigated the effect of temporal modulation on the generation and growth of spatial modulation during its nonlinear propagation. When there is no additional spatial modulation and the B integral is limited in the practical working range(usually less than 2.0 rad), no spatial modulation will be generated for both normal dispersion and anomalous dispersion;while with the B integral further increasing, spatial modulation will emerge with a rapid growth. When there is additional spatial modulation for anomalous dispersion, the spatial modulation with additional temporal modulation will grow more quickly than that without additional temporal modulation. However, for normal dispersion,the growth of spatial modulation for both cases is similar. (authors)

  17. The Marriage of Spectroscopy and Dynamics: Chirped-Pulse Fourier-Transform Mm-Wave Cp-Ft Spectroscopy in Pulsed Uniform Supersonic Flows

    Science.gov (United States)

    Abeysekera, Chamara; Oldham, James M.; Suits, Arthur G.; Park, G. Barratt; Field, Robert W.

    2012-06-01

    A new experimental scheme is presented that combines two powerful emerging technologies: chirped-pulse Fourier-transform mm-Wave spectroscopy and pulsed uniform supersonic flows. It promises a nearly universal detection method that can deliver quantitative isomer, conformer, and vibrational level specific detection, characterization of unstable reaction products and intermediates, and perform unique spectroscopic, kinetics, and dynamics measurements. Chirped-pulse Fourier-transform microwave (CP-FTMW) spectroscopy, pioneered by Pate and coworkers, allows rapid acquisition of broadband microwave spectrum through advancements in waveform generation and oscilloscope technology. This revolutionary approach has successfully been adapted to higher frequencies by the Field group at MIT. Our new apparatus will exploit amplified chirped pulses in the range of 26-40 GHz, in combination with a pulsed uniform supersonic flow from a Laval nozzle. This nozzle source, pioneered by Rowe, Sims, and Smith for low temperature kinetics studies, produces thermalized reactants at high densities and low temperatures perfectly suitable for reaction dynamics experiments studied using the CP-mmW approach. This combination of techniques shall enhance the thousand-fold improvement in data acquisition rate achieved in the CP method by a further 2-3 orders of magnitude. A pulsed flow alleviates the challenges of continuous uniform flow, e.g. large gas loads and reactant consumption rates. In contrast to other pulsed Laval systems currently in use, we will use a fast piezo valve and small chambers to achieve the desired pressures while minimizing the gas load, so that a 10 Hz repetition rate can be achieved with one turbomolecular pump. The proposed technique will be suitable for many diverse fields, including fundamental studies in spectroscopy and reaction dynamics, reaction kinetics, combustion, atmospheric chemistry, and astrochemistry. We expect a significant advancement in the ability to

  18. Fiber-Optical Parametric Amplification of Sub-Picosecond Pulses for High-Speed Optical Communications

    DEFF Research Database (Denmark)

    Lali-Dastjerdi, Zohreh; Cristofori, Valentina; Rottwitt, Karsten;

    2015-01-01

    This article reviews recent results of amplification of short optical pulses using fiber-optical parametric amplifiers. This includes chirped-pulse amplification of 400 fs pulses, error-free amplification of a 640-Gbit/s optical time-division multiplexed signal with less than a 1-dB power penalty...

  19. High-energy femtosecond Yb-doped all-fiber monolithic chirped-pulse amplifier at repetition rate of 1 MHz

    Science.gov (United States)

    Lv, Zhi-Guo; Teng, Hao; Wang, Li-Na; Wang, Jun-Li; Wei, Zhi-Yi

    2016-09-01

    A high-energy femtosecond all ytterbium fiber amplifier based on a chirped-pulse amplification (CPA) technique at a repetition rate of 1 MHz seeded by a dispersion-management mode-locked picosecond broadband oscillator is studied. We find that the compressed pulse duration is dependent on the amplified energy, the pulse duration of 804 fs corresponds to the maximum amplified energy of 10.5 μJ, while the shortest pulse duration of 424 fs corresponds to the amplified energy of 6.75 μJ. The measured energy fluctuation is approximately 0.46% root mean square (RMS) over 2 h. The low-cost femtosecond fiber laser source with super-stability will be widely used in industrial micromachines, medical therapy, and scientific studies. Project supported by the National Key Technology Research and Development Program of the Ministry of Science and Technology of China (Grant No. 2012BAC23B03), the National Key Basic Research Program of China (Grant No. 2013CB922401), and the National Natural Science Foundation of China (Grant No. 11474002).

  20. Chirped Pulse-Fourier Transform Microwave Spectroscopy of Ethyl 3-METHYL-3-PHENYLGLYCIDATE (strawberry Aldehyde)

    Science.gov (United States)

    Shipman, Steven T.; Neill, Justin L.; Muckle, Matt T.; Suenram, Richard D.; Pate, Brooks H.

    2009-06-01

    Strawberry aldehyde (C_{12} O_3 H_{14}), a common artificial flavoring compound, has two non-interconvertible conformational families defined by the relative stereochemistry around its epoxide carbons. In one family, referred to as the trans because the two large substituents (a phenyl ring and an ethyl ester) are on opposite sides of the epoxide ring, these two substituents are unable to interact with each other. However, in the cis family, there is a long-range interaction that is difficult to accurately capture in electronic structure calculations. Three trans and two cis conformations have been assigned by broadband chirped pulse Fourier transform microwave spectroscopy, along with the C-13 isotopomers in natural abundance for one conformer from each of the families. The agreement of the rotational constants, relative dipole moments, and relative energies between theory and experiment is excellent, even at relatively crude levels of theory, for the trans family, but is quite poor for the cis conformers. In addition, due to the reactivity of strawberry aldehyde and the high temperature to which it must be heated to yield a suitable vapor pressure, several decomposition products have been assigned, and more, as of yet unassigned, are likely to be present. This project demonstrates some of the challenges in performing large-molecule rotational spectroscopy.

  1. Highly efficient TW multipass Ti:sapphire laser system

    Institute of Scientific and Technical Information of China (English)

    魏志义[1; 张杰[2; 夏江帆[3; 冯宝华[4; 张秀兰[5; 邱阳[6

    2000-01-01

    An efficient chirped-pulse amplification, Ti:sapphire laser system, has been developed using mainly domestic components. The gain-narrowing effect has been significantly overcome by shaping spectrum of seeding pulses. With a novel aberration-free stretcher and two stage multi-pass amplifiers, pulses with duration of 25 fs and 36-mJ energy have been obtained at 10 Hz repetition rate, using only less than 290 mJ green Nd: YAG pump energy. This corresponds to a 1.4 TW peak power and 32% main amplification efficiency. The energy stability of the laser systems is better than ± 3% .

  2. Highly efficient TW multipass Ti:sapphire laser system

    Institute of Scientific and Technical Information of China (English)

    2000-01-01

    An efficient chirped-pulse amplification, Ti:sapphire laser system, has been developed using mainly domestic components. The gain-narrowing effect has been significantly overcome by shaping spectrum of seeding pulses. With a novel aberration-free stretcher and two stage multi-pass amplifiers, pulses with duration of 25 fs and 36-mJ energy have been obtained at 10 Hz repetition rate, using only less than 290 mJ green Nd:YAG pump energy. This corresponds to a 1.4 TW peak power and 32% main amplification efficiency. The energy stability of the laser systems is better than ±3%.

  3. Optical Parametric Amplification for High Peak and Average Power

    Energy Technology Data Exchange (ETDEWEB)

    Jovanovic, I

    2001-11-26

    Optical parametric amplification is an established broadband amplification technology based on a second-order nonlinear process of difference-frequency generation (DFG). When used in chirped pulse amplification (CPA), the technology has been termed optical parametric chirped pulse amplification (OPCPA). OPCPA holds a potential for producing unprecedented levels of peak and average power in optical pulses through its scalable ultrashort pulse amplification capability and the absence of quantum defect, respectively. The theory of three-wave parametric interactions is presented, followed by a description of the numerical model developed for nanosecond pulses. Spectral, temperature and angular characteristics of OPCPA are calculated, with an estimate of pulse contrast. An OPCPA system centered at 1054 nm, based on a commercial tabletop Q-switched pump laser, was developed as the front end for a large Nd-glass petawatt-class short-pulse laser. The system does not utilize electro-optic modulators or multi-pass amplification. The obtained overall 6% efficiency is the highest to date in OPCPA that uses a tabletop commercial pump laser. The first compression of pulses amplified in highly nondegenerate OPCPA is reported, with the obtained pulse width of 60 fs. This represents the shortest pulse to date produced in OPCPA. Optical parametric amplification in {beta}-barium borate was combined with laser amplification in Ti:sapphire to produce the first hybrid CPA system, with an overall conversion efficiency of 15%. Hybrid CPA combines the benefits of high gain in OPCPA with high conversion efficiency in Ti:sapphire to allow significant simplification of future tabletop multi-terawatt sources. Preliminary modeling of average power limits in OPCPA and pump laser design are presented, and an approach based on cascaded DFG is proposed to increase the average power beyond the single-crystal limit. Angular and beam quality effects in optical parametric amplification are modeled

  4. Raman amplification in optical communication systems

    DEFF Research Database (Denmark)

    Kjær, Rasmus

    2008-01-01

    Fiber Raman amplifiers are investigated with the purpose of identifying new applications and limitations for their use in optical communication systems. Three main topics are investigated, namely: New applications of dispersion compensating Raman amplifiers, the use Raman amplification to increase...

  5. 12  mJ kW-class ultrafast fiber laser system using multidimensional coherent pulse addition.

    Science.gov (United States)

    Kienel, Marco; Müller, Michael; Klenke, Arno; Limpert, Jens; Tünnermann, Andreas

    2016-07-15

    An ultrafast fiber-chirped-pulse amplification system using a combination of spatial and temporal coherent pulse combination is presented. By distributing the amplification among eight amplifier channels and four pulse replicas, up to 12 mJ pulse energy with 700 W average power and 262 fs pulse duration have been obtained with a system efficiency of 78% and excellent beam quality. To the best of our knowledge, this is the highest energy achieved by an ultrafast fiber-based laser system to date. PMID:27420531

  6. Fiber-Optical Parametric Amplification of Sub-Picosecond Pulses for High-Speed Optical Communications

    Science.gov (United States)

    Lali-Dastjerdi, Zohreh; Cristofori, Valentina; Rottwitt, Karsten; Galili, Michael; Peucheret, Christophe

    2015-03-01

    This article reviews recent results of amplification of short optical pulses using fiber-optical parametric amplifiers. This includes chirped-pulse amplification of 400 fs pulses, error-free amplification of a 640-Gbit/s optical time-division multiplexed signal with less than a 1-dB power penalty, and all-optical phase-preserving amplitude regeneration of a 640-Gbit/s return-to-zero differential phase-shift keying optical time-division multiplexed signal.

  7. Integrated pulse stretchers for high-energy CPA and OPCPA systems

    Science.gov (United States)

    Shah, Lawrence; Bodnar, Nathan; Roumayah, Patrick; Webb, Benjamin; Bradford, Joshua; Richardson, Martin

    2016-03-01

    Pulse stretchers are critical components in chirped pulse amplification (CPA) and optical parametric CPA (OPCPA) laser systems. In CPA systems, pulse stretching and compression is typical accomplished using bulk diffraction gratings; however integrated devices such volume or fiber Bragg gratings can provide similar optical performance with significantly smaller footprint and simplified alignment. In this work, we discuss the use of such integrated devices to stretch a 100 fs pulse to 400 ps with customized third order dispersion for use in a multi-TW Ti:Sapphire system as well as integrated optics to control the pulse duration in pump lasers for OPCPA systems.

  8. Ultrafast, ultrahigh-peak power Ti:sapphire laser system

    Energy Technology Data Exchange (ETDEWEB)

    Yamakawa, Koichi; Aoyama, Makoto; Matsuoka, Shinichi; Akahane, Yutaka; Kase, Teiji; Nakano, Fumihiko; Sagisaka, Akito [Advanced Photon Research Center, Kansai Research Establishment, Japan Atomic Energy Research Inst., Kizu, Kyoto (Japan)

    2001-01-01

    We review progress in the generation of multiterawatt optical pulses in the 10-fs range. We describe a design, performance and characterization of a Ti:sapphire laser system based on chirped-pulse amplification, which has produced a peak power in excess of 100-TW with sub-20-fs pulse durations and an average power of 19-W at a 10-Hz repetition rate. We also discuss extension of this system to the petawatt power level and potential applications in the relativistic, ultrahigh intensity regimes. (author)

  9. Isothermal DNA amplification in vitro: the helicase-dependent amplification system.

    Science.gov (United States)

    Jeong, Yong-Joo; Park, Kkothanahreum; Kim, Dong-Eun

    2009-10-01

    Since the development of polymerase chain reaction, amplification of nucleic acids has emerged as an elemental tool for molecular biology, genomics, and biotechnology. Amplification methods often use temperature cycling to exponentially amplify nucleic acids; however, isothermal amplification methods have also been developed, which do not require heating the double-stranded nucleic acid to dissociate the synthesized products from templates. Among the several methods used for isothermal DNA amplification, the helicase-dependent amplification (HDA) is discussed in this review with an emphasis on the reconstituted DNA replication system. Since DNA helicase can unwind the double-stranded DNA without the need for heating, the HDA system provides a very useful tool to amplify DNA in vitro under isothermal conditions with a simplified reaction scheme. This review describes components and detailed aspects of current HDA systems using Escherichia coli UvrD helicase and T7 bacteriophage gp4 helicase with consideration of the processivity and efficiency of DNA amplification. PMID:19629390

  10. Integrated single grating compressor for variable pulse front tilt in simultaneously spatially and temporally focused systems.

    Science.gov (United States)

    Block, Erica; Thomas, Jens; Durfee, Charles; Squier, Jeff

    2014-12-15

    A Ti:Al(3)O(2) multipass chirped pulse amplification system is outfitted with a single-grating, simultaneous spatial and temporal focusing (SSTF) compressor platform. For the first time, this novel design has the ability to easily vary the beam aspect ratio of an SSTF beam, and thus the degree of pulse-front tilt at focus, while maintaining a net zero-dispersion system. Accessible variation of pulse front tilt gives full spatiotemporal control over the intensity distribution at the focus and could lead to better understanding of effects such as nonreciprocal writing and SSTF-material interactions. PMID:25503029

  11. Microwave spectral taxonomy: A semi-automated combination of chirped-pulse and cavity Fourier-transform microwave spectroscopy

    Science.gov (United States)

    Crabtree, Kyle N.; Martin-Drumel, Marie-Aline; Brown, Gordon G.; Gaster, Sydney A.; Hall, Taylor M.; McCarthy, Michael C.

    2016-03-01

    Because of its structural specificity, rotational spectroscopy has great potential as an analytical tool for characterizing the chemical composition of complex gas mixtures. However, disentangling the individual molecular constituents of a rotational spectrum, especially if many of the lines are entirely new or unknown, remains challenging. In this paper, we describe an empirical approach that combines the complementary strengths of two techniques, broadband chirped-pulse Fourier transform microwave spectroscopy and narrowband cavity Fourier transform microwave spectroscopy, to characterize and assign lines. This procedure, called microwave spectral taxonomy, involves acquiring a broadband rotational spectrum of a rich mixture, categorizing individual lines based on their relative intensities under series of assays, and finally, linking rotational transitions of individual chemical compounds within each category using double resonance techniques. The power of this procedure is demonstrated for two test cases: a stable molecule with a rich spectrum, 3,4-difluorobenzaldehyde, and products formed in an electrical discharge through a dilute mixture of C2H2 and CS2, in which spectral taxonomy has enabled the identification of propynethial, HC(S)CCH.

  12. Broadband Chirped-Pulse Fourier-Transform Microwave Spectroscopic Investigation of the Structures of Three Diethylsilane Conformers

    Science.gov (United States)

    Steber, Amanda L.; Obenchain, Daniel A.; Peebles, Rebecca A.; Peebles, Sean A.; Neill, Justin L.; Muckle, Matt T.; Pate, Brooks H.; Guirgis, Gamil A.

    2009-06-01

    The rotational spectrum of diethylsilane has been assigned using broadband chirped-pulse Fourier-transform microwave (CP-FTMW) spectroscopy. Previously, Fourier-transform microwave rotational spectra were observed using a Balle-Flygare type instrument for the ^{28}Si isotopologues of the gauche-gauche, trans-gauche, and trans-trans conformers. In the present study, a broadband microwave spectrum was obtained at the University of Virginia, taking advantage of the ability to perform deep signal averaging to increase the measurement sensitivity. To obtain a full structural determination of the conformers of this molecule, spectra for the ^{29}Si, ^{30}Si, and single ^{13}C substitutions for the gauche-gauche, the trans-gauche, and the trans-trans species were assigned. Substitution (r_s) structures and inertial fit (r_0) structures were determined and a comparison between the experimental and ab initio structures will be presented. For the ^{28}Si isotopologues, the percent differences between the experimental and ab initio rotational constants are less than 1.5% for the trans-trans and trans-gauche and are between 2.0 and 5.0% for the gauche-gauche conformer. The structural parameters will be compared between this molecule, diethylgermane and other silicon containing molecules and the relative abundances of the three conformers will be discussed. S.A. Peebles, M.M. Serafin, R.A. Peebles, G.A. Guirgis, and H.D. Stidham J. Phys. Chem. A, (2009), DOI: 10.1021/jp811049n.

  13. Laser System for Photoelectron and X-Ray Production in the PLEIADES Compton Light Source

    CERN Document Server

    Gibson, David J; Betts, S; Crane, John; Jovanovic, Igor

    2005-01-01

    The PLEIADES (Picosecond Laser-Electron Interaction for the Dynamic Evaluation of Structures) facility provides tunable short x-ray pulses with energies of 30-140 keV and pulse durations of 0.3 - 5 ps by scattering an intense, ultrashort laser pulse off a 35-75 MeV electron beam. Synchronization of the laser and electron beam is obtained by using a photoinjector gun, and using the same laser system to generate the electrons and the scattering laser. The Ti:Sapphire, chirped pulse amplification based 500 mJ, 50 fs, 810 nm scattering laser and the similar 300 μJ, 5 ps, 266 nm photoinjector laser systems are detailed. Additionally, an optical parametric chirped pulse amplification (OPCPA) system is studied as a replacement for part of the scattering laser front end. Such a change would significantly simplify the set-up the laser system by removing the need for active switching optics, as well as increase the pre-pulse contrast ratio which will be important when part of the scattering laser is used as a...

  14. Signal amplification in a qubit-resonator system

    International Nuclear Information System (INIS)

    We study the dynamics of a qubit-resonator system, when the resonator is driven by two signals. The interaction of the qubit with the high-amplitude driving we consider in terms of the qubit dressed states. Interaction of the dressed qubit with the second probing signal can essentially change the amplitude of this signal. We calculate the transmission amplitude of the probe signal through the resonator as a function of the qubit energy and the driving frequency detuning. The regions of increase and attenuation of the transmitted signal are calculated and demonstrated graphically. We present the influence of the signal parameters on the value of the amplification, and discuss the values of the qubit-resonator system parameters for an optimal amplification and attenuation of the weak probe signal.

  15. A Study of the Monohydrate and Dihydrate Complexes of Perfluoropropionic Acid Using Chirped-Pulse Fourier Transform Microwave (CP-FTMW) Spectroscopy.

    Science.gov (United States)

    Grubbs, G S; Obenchain, Daniel A; Frank, Derek S; Novick, Stewart E; Cooke, S A; Serrato, Agapito; Lin, Wei

    2015-10-22

    This work reports the first known spectroscopic observation of the monohydrate and dihydrate complexes of perfluoropropionic acid (PFPA). The spectra have been observed using a chirped-pulse Fourier transform microwave (CP-FTMW) spectrometer in the 7750 to 14,250 MHz region. The structures of the species have been confirmed with the aid of ab initio quantum chemical calculations. Rotational constants A, B, and C have been determined and reported for both species along with centrifugal distortion constants ΔJ, ΔJK, ΔK, δJ, δK for H2O-PFPA and ΔJ, ΔJK, and δJ for (H2O)2-PFPA. Effects due to large amplitude motions were not observable in these experiments. Structures of the complexes have been determined using a combination of experimental second moment values and ab initio results. The complexation of the -OH of one or two water molecules has been found to occur in the plane of the carboxylic acid group forming a six- or eight-member ring.

  16. Study of the transverse lasing in big size crystals of Ti:Sa. Application to the design of the peta-watt high-energy amplifier of the pilot laser of the LASERIX facility; Etude de l'amplification parasite transverse de la fluorescence dans les cristaux de Ti:Sa de grandes dimensions. Application a la realisation de l'amplificateur petawatt haute energie du laser pilote de la station LASERIX

    Energy Technology Data Exchange (ETDEWEB)

    Ple, F

    2007-11-15

    This manuscript presents experimental and theoretical works accomplished for the development of the LASERIX laser driver. The main goal of this thesis work was to design a high energy and high repetition rate titanium doped sapphire amplifier (Ti:Sa) allowing to reach an energy of 40 J at a repetition rate of 0.1 Hz before compression. After a general description of amplification in chirped pulse amplification Ti:Sa laser systems (Chapter 1), I present the two particular developments we made during this work for high energy amplification (Chapter 2). First, the spatial shaping and the homogenization based on micro-lens array (MLA) systems of the eight Nd-Glass pump lasers dedicated to the pumping of the last booster amplifier.Secondly, the suppression of parasitic effects due to transverse amplification of the fluorescence in the last booster amplifier Ti:Sa crystal. The developments performed as part of this thesis allowed us to amplify an impulsion of 2 J of energy up to 39 J in a crystal of 10 cm diameter. I also present the simulation program I developed (Chapter 3) in order to simulate the three dimensional parasitic lasing effect and fluorescence transverse amplification phenomena in large Ti:Sa crystals. A parametric study of these parasitic effects is also presented. Finally, the last part of this manuscript (Chapter 4) gives prospects of this work as part of the large future ELI and ILE projects. (author)

  17. Laser system for a high duty cycle photoinjector

    International Nuclear Information System (INIS)

    We have developed a solid-state laser system that produces a 1 MHz pulse train of 800 equal amplitude pulses with 25 μJ per pulse at λ=1054 nm; the repetition rate is 1 Hz. The laser pulse train is produced by a mode-locked Nd:YLF oscillator, synchronized to the phase of the photoinjector RF. The pulses are amplified in a Nd : glass multipass amplifier followed by a two-pass amplifier. The laser system uses chirped pulse amplification to produce 2 ps pulses. After two stages of second harmonic generation to λ=263 nm and transport losses, 5 μJ per pulse of UV are available at the Cs2Te photocathode of the RF gun. The photocathode quantum efficiency is in the 2-6% range, and electron bunches with charge in excess of 10 nC have been extracted during photoinjector operation

  18. Advanced unrepeatered systems using novel Raman amplification schemes

    Science.gov (United States)

    Chang, Do-il; Pelouch, Wayne; Burtsev, Sergey; Perrier, Philippe; Fevrier, Herve

    2015-01-01

    Unrepeatered transmission systems provide a cost-effective solution to transmit high capacity channels in submarine networks to communicate between coastal population centers or in terrestrial networks to connect remote areas where service access is difficult. The main goal of unrepeatered systems has traditionally been to achieve the longest reach, however, increasing traffic demands now require unrepeatered systems to support both longer reach and higher transport capacity. As a result, transmission rate of unrepeatered systems has quickly moved from 10 Gb/s to 40 Gb/s or 100 Gb/s. This paper reviews the key basic technologies, with a specific focus on Raman amplification, required for long-reach, high-capacity unrepeatered optical transmission systems. We will discuss novel Raman amplification schemes, enhanced remote optically pumped amplifiers (ROPA), ultra-low loss / large effective area fibers, and coherent transmission with advanced modulation format and high FEC coding gain. We will also report recent experimental demonstrations that show how these technologies have been combined to achieve industry's leading capacity and reach transmission.

  19. Laser-induced damage of high reflectors for Ti:sapphire laser system

    Institute of Scientific and Technical Information of China (English)

    Jianke Yao; Weiqiang Zeng; Zhengxiu Fan; Hongbo He; Jianda Shao

    2007-01-01

    A broadband (~ 176 nm, R > 98%, λ0 = 800 nm) and high laser-induced damage threshold (LIDT =2.4 J/cm2) TiO2/HfO2/SiO2 high reflector (HR) for Ti:sapphire chirped-pulse amplification (CPA) laser system is fabricated by the electron beam evaporation. The refractive index and extinction coefficient of TiO2 and HfO2 films are calculated from single-layer films' transmittance spectra. The properties of HR are mainly determined by the high refractive index material. The high refractive index leads to wide bandwidth. A low extinction coefficient indicates low absorption and high LIDT. The possible damage mechanism of HR is discussed.

  20. Spectral characteristics of chirped pulsed Gaussian beams propagating in turbulent atmosphere%啁啾脉冲高斯光束在大气湍流中的传输特性

    Institute of Scientific and Technical Information of China (English)

    曾祥梅; 段作梁; 常凌颖; 张美志

    2013-01-01

    基于广义惠更斯-菲涅耳原理,推导出啁啾脉冲高斯光束在湍流大气中传输的光谱解析表达式,并对解析表达式进行了数值仿真.结果表明:啁啾参数越大,光源谱宽越宽;当光源相对谱宽大于0.336时,轴上点光谱产生蓝移;湍流使得轴上点光谱的相对频移量减小,相对频移量随源光谱宽的增大而非线性增大;增大光束束腰半径可减小湍流对光谱频移、光束展宽的影响.%Based on the extended Huygens-Fresnel principle,analytical expressions are derived for the cross-spectral density matrix of chirped pulsed Gaussian beams propagating in turbulent atmosphere,which are then numerically simulated.It is shown that there are blue shifts in the spectra of axis point when the spectral width of chirped pulsed Gaussian beams is more than a certain value of 0.336.The turbulence induces the decrease of relative frequency shift of on-axis spectra; the relative frequency shift of on-axis spectra increases nonlinearly with the increasing light source spectral width.Increasing the beam waist radius can inhibit the relative frequency shift and the beam broadening.

  1. High-energy fibered amplification for large-scale laser facilities

    International Nuclear Information System (INIS)

    This work concerns the development of a double-clad ytterbium-doped single-mode micro-structured flexible fiber-based amplifier, in the nanosecond, multi-kilohertz and milli-Joule regime, for large-scale laser facilities seeding. We have used a multi-stage master oscillator power amplifier fibered architecture. A numerical model of ytterbium-doped double-clad fiber-based amplification, including amplified spontaneous emission, was developed in order to study the behaviour of such amplifier and to correctly design the experimental set-up. This model was completed by a feed-back algorithm to numerically predict the optimal temporal shape to compensate the gain saturation process. We demonstrated experimental results in good agreement with numerical simulations, with the following performances: 0.5 mJ pulse energy, at a frequency repetition from 1 kHz to 10 kHz, with a narrow bandwidth spectrum centred at 1053 nm wavelength, with 10 ns pulse duration on a perfect super-Gaussian temporal profile, an optical signal-to-noise ratio better than 50 dB and a polarization extinction ratio of 20 dB. We checked that the beam quality was diffraction limited, with an M2 measurement of 1.1. Moreover, the system can deliver energies up to 1.5 mJ. Then, we took the advantage of such results to amplify chirped pulses. We demonstrated 0.7 mJ pulse energy, with 570 fs duration at 10 kHz repetition frequency. (author)

  2. Simple system for isothermal DNA amplification coupled to lateral flow detection.

    Directory of Open Access Journals (Sweden)

    Kristina Roskos

    Full Text Available Infectious disease diagnosis in point-of-care settings can be greatly improved through integrated, automated nucleic acid testing devices. We have developed an early prototype for a low-cost system which executes isothermal DNA amplification coupled to nucleic acid lateral flow (NALF detection in a mesofluidic cartridge attached to a portable instrument. Fluid handling inside the cartridge is facilitated through one-way passive valves, flexible pouches, and electrolysis-driven pumps, which promotes a compact and inexpensive instrument design. The closed-system disposable prevents workspace amplicon contamination. The cartridge design is based on standard scalable manufacturing techniques such as injection molding. Nucleic acid amplification occurs in a two-layer pouch that enables efficient heat transfer. We have demonstrated as proof of principle the amplification and detection of Mycobacterium tuberculosis (M.tb genomic DNA in the cartridge, using either Loop Mediated Amplification (LAMP or the Exponential Amplification Reaction (EXPAR, both coupled to NALF detection. We envision that a refined version of this cartridge, including upstream sample preparation coupled to amplification and detection, will enable fully-automated sample-in to answer-out infectious disease diagnosis in primary care settings of low-resource countries with high disease burden.

  3. Experimental demonstration of spatially coherent beam combining using optical parametric amplification.

    Science.gov (United States)

    Kurita, Takashi; Sueda, Keiichi; Tsubakimoto, Koji; Miyanaga, Noriaki

    2010-07-01

    We experimentally demonstrated coherent beam combining using optical parametric amplification with a nonlinear crystal pumped by random-phased multiple-beam array of the second harmonic of a Nd:YAG laser at 10-Hz repetition rate. In the proof-of-principle experiment, the phase jump between two pump beams was precisely controlled by a motorized actuator. For the demonstration of multiple-beam combining a random phase plate was used to create random-phased beamlets as a pump pulse. Far-field patterns of the pump, the signal, and the idler indicated that the spatially coherent signal beams were obtained on both cases. This approach allows scaling of the intensity of optical parametric chirped pulse amplification up to the exa-watt level while maintaining diffraction-limited beam quality.

  4. Precision charge amplification and digitization system for a scintillating and lead glass array

    Energy Technology Data Exchange (ETDEWEB)

    Delchamps, S.W.; Rameika, R.; Arenton, M.; Chen, T.Y.; Conetti, S.; Cox, B.; Etemadi, B.; Fortney, L.; Guffey, K.; Haire, M.

    1989-01-01

    A 544-channel low-noise, high-rate, precision charge amplification and ADC system was constructed for the Fermilab Experiment 705 electromagnetic calorimeter, which employs SCG1-C scintillating glass and SF5 lead glass instrumented with photo-multiplier tubes. A general discussion of the system is given, and the charge amplification, fast trigger pulse generation, and analog to digital conversion aspects of the system are presented in more detail. Performance is evaluated using data from Experiment 705 and from off-line tests. Short and long term pedestal stability, baseline recovery and rate capability, linearity of response, and crosstalk between channels are discussed. 8 refs., 2 tabs.

  5. Supporting inclusion of learners with attention deficithyperactivity disorder in sound-field-amplification-systems

    DEFF Research Database (Denmark)

    Voldborg, Hanne

    2015-01-01

    ICT is internationally recognised as a valuable tool for inclusion, particular for people with disabilities, where technology can improve their quality of life, reduce social exclusion, and increase participation in life and learning. This study examines the impact teachers and learners experience...... in proportion to classroom and on-task behaviour among children with developmental and attention deficits when using personal Sound-Field-AmplificationSystems in the classroom. The aim of increasing knowledge about ‘good practise’ when Sound-Field-Amplification-Systems are put into operation will uncover...

  6. Signal amplification in biological and electrical engineering systems: universal role of cascades.

    Science.gov (United States)

    Grubelnik, Vladimir; Dugonik, Bogdan; Osebik, Davorin; Marhl, Marko

    2009-08-01

    In this paper we compare the cascade mechanisms of signal amplification in biological and electrical engineering systems, and show that they share the capacity to considerably amplify signals, and respond to signal changes both quickly and completely, which effectively preserves the form of the input signal. For biological systems, these characteristics are crucial for efficient and reliable cellular signaling. We show that this highly-efficient biological mechanism of signal amplification that has naturally evolved is mathematically fully equivalent with some man-developed amplifiers, which indicates parallels between biological evolution and successful technology development.

  7. Computational method and system for modeling, analyzing, and optimizing DNA amplification and synthesis

    Science.gov (United States)

    Vandersall, Jennifer A.; Gardner, Shea N.; Clague, David S.

    2010-05-04

    A computational method and computer-based system of modeling DNA synthesis for the design and interpretation of PCR amplification, parallel DNA synthesis, and microarray chip analysis. The method and system include modules that address the bioinformatics, kinetics, and thermodynamics of DNA amplification and synthesis. Specifically, the steps of DNA selection, as well as the kinetics and thermodynamics of DNA hybridization and extensions, are addressed, which enable the optimization of the processing and the prediction of the products as a function of DNA sequence, mixing protocol, time, temperature and concentration of species.

  8. Rapid amplification system for recombinant protein production in Chinese Hamster Ovary (CHO) Cells.

    Science.gov (United States)

    Metta, M K; Kunaparaju, R K; Tantravahi, S

    2016-01-01

    Recombinant therapeutic proteins have changed the face of modern medicine in the present trend and they continue to provide innovative therapies for deadly diseases. This study describes the development of a novel stable expression system for rapid amplification of genes in Chinese Hamster Ovary (CHO) cells. The expression system consists of a host CHO cell line and an expression vector (pUB-PyOri-D-C) which encodes for Polyomavirus (Py) Origin of Replication (PyOri) for amplification of integrated genes in the presence of Py Large T Antigen (PyLT) and Dihydrofolate Reductase (DHFR) selectable marker gene for selection in the presence of Methotrexate (MTX). Use of both PyOri/PyLT and DHFR can reduce the number of rounds of selection and amplification required for isolation of high producing clones. The efficiency of pUB-PyOri-D-C was compared with that of pUB-D-C plasmid using Green fluorescent protein (GFP) and Erythropoietin (EPO) as reporter proteins. Our results showed that pUB-PyOri-D-C-EPO can help development of high expressing clone in one round of selection/amplification as compared to multiple rounds of selection/amplification with pUB-D-C-EPO plasmid. CHO-DG44/EPO clone generated using pUB-PyOri-D-C-EPO gave a productivity of 119 mg/L in shake flask. PMID:26950459

  9. Coupling dynamics for a photonic crystal fib er femtosecond laser nonlinear amplification system%光子晶体光纤飞秒激光非线性放大系统的耦合动力学过程研究∗

    Institute of Scientific and Technical Information of China (English)

    石俊凯; 柴路; 赵晓薇; 李江; 刘博文; 胡明列; 栗岩锋; 王清月

    2015-01-01

    构建了掺镱大模场面积单偏振光子晶体光纤飞秒激光非线性放大系统.讨论了腔内净色散量和抽运功率对振荡级输出参数的影响和振荡级参数对放大级输出参数的影响.在本实验条件下,当腔内净色散量取较大负色散时,振荡级直接输出的脉冲更宽,且携带更少的啁啾.当振荡级抽运4.53 W时,选择最接近变换极限的脉冲作为种子脉冲,放大级在60 W抽运时输出压缩后无基底的短脉冲,宽度为45.7 fs,平均功率28 W.振荡级抽运功率增加到5.08 W,放大级抽运70 W时,获得最高输出功率34.5 W,对应脉宽53.5 fs.%A femtosecond laser single-stage nonlinear amplification system composed of Yb-doped large-mode-area single-polarization photonic crystal fibers is demonstrated. Effects of net cavity dispersion and pump power on oscillator output parameters and the evolution dynamics of the amplified pulse after compression are discussed for different seed pulse parameters. Under the experimental conditions in this paper, the longer and less chirped pulses are obtained with a larger negative net intracavity dispersion in the oscillator. When a nearly-transform-limited pulse is chosen as seed pulse nder the condition of oscillator pump power of 4.53 W, the shortest nearly-pedestal-free amplified pulse is achieved under the amplifier pump power of 60 W after the dispersion is compensated by a grating pair, in which the pulse duration is 45.7 fs with an average power of 28 W at a repetition frequency of 42 MHz. When the oscillator pump power is increased to 5.08 W and most nearly-transform-limited pulses under the pump condition are selected as the seed pulses, the maximum average power of 34.5 W with a duration of 53.5 fs is obtained at an amplifier pump power of 70 W.

  10. A Novel Extrinsic Fiber-Optic Fabry-Perot Strain Sensor System Based on Optical Amplification

    Institute of Scientific and Technical Information of China (English)

    2003-01-01

    A novel extrinsic fiber-optic Fabry-Perot interferometric strain sensor system is demonstrated based on the simultaneous use of the amplified spontaneous emission and optical amplification. The improvement of 3~4 orders of magnitude in signal level can be achieved.

  11. Multi-Terabit Long-Haul Transmission System Utilizing Distributed Raman Amplification Technologies

    Institute of Scientific and Technical Information of China (English)

    Takao; Naito; Toshiki; Tanaka

    2003-01-01

    Here we summarize multi-terabit long-haul transmission experiment and distributed Raman amplification (DRA) technologies. As well, we investigate the configuration of dispersion-managed fibers for the DRA-based system from the viewpoint of the fiber non-linear effect and required pumping power.

  12. A Novel Extrinsic Fiber-Optic Fabry-Perot Strain Sensor System Based on Optical Amplification

    Institute of Scientific and Technical Information of China (English)

    Yun-Jiang Rao; Jian Jiang; Zheng-Lin Ran

    2003-01-01

    A novel extrinsic fiber-optic Fabry-Perot interferometric strain sensor system is demonstrated based on the simultaneous use of the amplified spontaneous emission and optical amplification. The improvement of 3~4 orders of magnitude in signal level can be achieved.

  13. Real-time DNA Amplification and Detection System Based on a CMOS Image Sensor.

    Science.gov (United States)

    Wang, Tiantian; Devadhasan, Jasmine Pramila; Lee, Do Young; Kim, Sanghyo

    2016-01-01

    In the present study, we developed a polypropylene well-integrated complementary metal oxide semiconductor (CMOS) platform to perform the loop mediated isothermal amplification (LAMP) technique for real-time DNA amplification and detection simultaneously. An amplification-coupled detection system directly measures the photon number changes based on the generation of magnesium pyrophosphate and color changes. The photon number decreases during the amplification process. The CMOS image sensor observes the photons and converts into digital units with the aid of an analog-to-digital converter (ADC). In addition, UV-spectral studies, optical color intensity detection, pH analysis, and electrophoresis detection were carried out to prove the efficiency of the CMOS sensor based the LAMP system. Moreover, Clostridium perfringens was utilized as proof-of-concept detection for the new system. We anticipate that this CMOS image sensor-based LAMP method will enable the creation of cost-effective, label-free, optical, real-time and portable molecular diagnostic devices. PMID:27302586

  14. Development of an Automated Microfluidic System for DNA Collection, Amplification, and Detection of Pathogens

    Energy Technology Data Exchange (ETDEWEB)

    Hagan, Bethany S.; Bruckner-Lea, Cynthia J.

    2002-12-01

    This project was focused on developing and testing automated routines for a microfluidic Pathogen Detection System. The basic pathogen detection routine has three primary components; cell concentration, DNA amplification, and detection. In cell concentration, magnetic beads are held in a flow cell by an electromagnet. Sample liquid is passed through the flow cell and bacterial cells attach to the beads. These beads are then released into a small volume of fluid and delivered to the peltier device for cell lysis and DNA amplification. The cells are lysed during initial heating in the peltier device, and the released DNA is amplified using polymerase chain reaction (PCR) or strand displacement amplification (SDA). Once amplified, the DNA is then delivered to a laser induced fluorescence detection unit in which the sample is detected. These three components create a flexible platform that can be used for pathogen detection in liquid and sediment samples. Future developments of the system will include on-line DNA detection during DNA amplification and improved capture and release methods for the magnetic beads during cell concentration.

  15. A High-Energy, Ultrashort-Pulse X-Ray System for the Dynamic Study of Heavy, Dense Materials

    Energy Technology Data Exchange (ETDEWEB)

    Gibson, David Jeremy [Univ. of California, Davis, CA (United States)

    2004-01-01

    Thomson-scattering based x-ray radiation sources, in which a laser beam is scattered off a relativistic electron beam resulting in a high-energy x-ray beam, are currently being developed by several groups around the world to enable studies of dynamic material properties which require temporal resolution on the order of tens of femtoseconds to tens of picoseconds. These sources offer pulses that are shorter than available from synchrotrons, more tunable than available from so-called Ka sources, and more penetrating and more directly probing than ultrafast lasers. Furthermore, Thomson-scattering sources can scale directly up to x-ray energies in the few MeV range, providing peak brightnesses far exceeding any other sources in this regime. This dissertation presents the development effort of one such source at Lawrence Livermore National Laboratory, the Picosecond Laser-Electron InterAction for the Dynamic Evaluation of Structures (PLEIADES) project, designed to target energies from 30 keV to 200 keV, with a peak brightness on the order of 1018 photons • s-1 • mm-2 • mrad-2 • 0.01% bandwidth-1. A 10 TW Ti:Sapphire based laser system provides the photons for the interaction, and a 100 MeV accelerator with a 1.6 cell S-Band photoinjector at the front end provides the electron beam. The details of both these systems are presented, as is the initial x-ray production and characterization, validating the theory of Thomson scattering. In addition to the systems used to enable PLEIADES, two alternative systems are discussed. An 8.5 GHz X-Band photoinjector, capable of sustaining higher accelerating gradients and producing lower emittance electron beams in a smaller space than the S-Band gun, is presented, and the initial operation and commissioning of this gun is presented. Also, a hybrid chirped-pulse amplification system is presented as an alternative to the standard regenerative amplifier technology in high

  16. A High-Energy, Ultrashort-Pulse X-Ray System for the Dynamic Study of Heavy, Dense Materials

    Energy Technology Data Exchange (ETDEWEB)

    Gibson, D J

    2004-09-17

    Thomson-scattering based x-ray radiation sources, in which a laser beam is scattered off a relativistic electron beam resulting in a high-energy x-ray beam, are currently being developed by several groups around the world to enable studies of dynamic material properties which require temporal resolution on the order of tens of femtoseconds to tens of picoseconds. These sources offer pulses that are shorter than available from synchrotrons, more tunable than available from so-called Ka sources, and more penetrating and more directly probing than ultrafast lasers. Furthermore, Thomson-scattering sources can scale directly up to x-ray energies in the few MeV range, providing peak brightnesses far exceeding any other sources in this regime. This dissertation presents the development effort of one such source at Lawrence Livermore National Laboratory, the Picosecond Laser-Electron InterAction for the Dynamic Evaluation of Structures (PLEIADES) project, designed to target energies from 30 keV to 200 keV, with a peak brightness on the order of 10{sup 18} photons {center_dot} s{sup -1} {center_dot} mm{sup -2} {center_dot} mrad{sup -2} {center_dot} 0.01% bandwidth{sup -1}. A 10 TW Ti:Sapphire based laser system provides the photons for the interaction, and a 100 MeV accelerator with a 1.6 cell S-Band photoinjector at the front end provides the electron beam. The details of both these systems are presented, as is the initial x-ray production and characterization, validating the theory of Thomson scattering. In addition to the systems used to enable PLEIADES, two alternative systems are discussed. An 8.5 GHz X-Band photoinjector, capable of sustaining higher accelerating gradients and producing lower emittance electron beams in a smaller space than the S-Band gun, is presented, and the initial operation and commissioning of this gun is presented. Also, a hybrid chirped-pulse amplification system is presented as an alternative to the standard regenerative amplifier technology

  17. SHAPE EFFECT OF ANNULAR CONCENTRATOR IN ULTRASONIC SYSTEM ON AMPLIFICATION FACTOR OF VIBRATIONS AMPLITUDE

    Directory of Open Access Journals (Sweden)

    D. A. Stepanenko

    2016-01-01

    Full Text Available The paper contains a theoretical underpinning on creation of ultrasonic vibration concentrators based on annular elastic elements with non-circular (ellipse-like eccentric shape of internal contour. Shape of internal contour in polar coordinates is described by Fourier series relative to angular coordinate that consists of a constant term and first and second harmonics. An effect of geometric parameters of the concentrator on amplification factor and natural vibration frequencies has been investigated with the help of a finite element method. The paper reveals the possibility to control an amplification factor of annular concentrators while varying eccentricity of internal contour and mean value of cross-section thickness. The amplification factor satisfies a condition K < N, where N is thickness ratio of amplifier input and output sections, and it is decreasing with increase of vibration mode order. The similar condition has been satisfied for conical bar concentrator with the difference that in the case of bar concentrators an amplification is ensured due to variation of diameter and N will represent ratio of diameters. It has been proved that modification of internal contour shape makes it possible to carry out a wide-band tuning of natural frequencies of concentrator vibrations without alteration of its overall dimensions and substantial change of amplification factor, which is important for frequency matching of the concentrator and ultrasonic vibratory system. Advantages of the proposed concentrators include simplicity of design and manufacturing, small overall dimensions, possibility for natural frequency tuning by means of static load variation. The developed concentrators can find their application in ultrasonic devices and instruments for technological and medical purposes.

  18. Method for signal conditioning and data acquisition system, based on variable amplification and feedback technique

    Energy Technology Data Exchange (ETDEWEB)

    Conti, Livio, E-mail: livio.conti@uninettunouniversity.net [Facoltà di Ingegneria, Università Telematica Internazionale Uninettuno, Corso Vittorio Emanuele II 39, 00186 Rome, Italy INFN Sezione Roma Tor Vergata, Via della Ricerca Scientifica 1, 00133 Rome (Italy); Sgrigna, Vittorio [Dipartimento di Matematica e Fisica, Università Roma Tre, 84 Via della Vasca Navale, I-00146 Rome (Italy); Zilpimiani, David [National Institute of Geophysics, Georgian Academy of Sciences, 1 M. Alexidze St., 009 Tbilisi, Georgia (United States); Assante, Dario [Facoltà di Ingegneria, Università Telematica Internazionale Uninettuno, Corso Vittorio Emanuele II 39, 00186 Rome, Italy INFN Sezione Roma Tor Vergata, Via della Ricerca Scientifica 1, 00133 Rome (Italy)

    2014-08-21

    An original method of signal conditioning and adaptive amplification is proposed for data acquisition systems of analog signals, conceived to obtain a high resolution spectrum of any input signal. The procedure is based on a feedback scheme of the signal amplification with aim at maximizing the dynamic range and resolution of the data acquisition system. The paper describes the signal conditioning, digitization, and data processing procedures applied to an a priori unknown signal in order to enucleate its amplitude and frequency content for applications in different environments: on the ground, in space, or in the laboratory. An electronic board of the conditioning module has also been constructed and described. In the paper are also discussed the main fields of application and advantages of the method with respect to those known today.

  19. Establishment and Optimization of SRAP Amplification System in Lonicara caerulea L.

    Institute of Scientific and Technical Information of China (English)

    SUN Feng; HUO Junwei; QIN Dong

    2011-01-01

    A single factor design was applied to optimize five factors influencing SRAP system, including Taq DNA polymerase, template DNA concentration, dNTPs, primer and Mg2+, each at four levels. The optimal SRAP-PCR system for Lonicera caerulea L. was 20 ktL SRAP-PCR amplification reaction solution containing 2.0 μL 10×PCR buffer, 1.0 U Taq DNA polymerase, 30 ng template DNA, 0.2 mmol·L-1 dNTPs, 2.0 mmol·L-1 Mg2+ and 0.2μmol·L-1 primer. The suitable amplification procedure consisted of an initial denaturation at 94℃ for 5 min; denaturation at 94℃ for 1 min, annealing at 35℃ for 1 rain, extension at 72℃ for 90 s and in total five cycles; denaturation at 94℃ for 1 min, annealing at 50℃ for 1 min, extension at 72℃ for 90 s and in total 35 cycles; extension at 72℃ for 8 rain; preservation at 4℃. The procedures and systems could meet the demand for SRAP amplification of Lonicera caerulea L. and would play an important role in Lonicera caerulea L. germplasm identification and genetic diversity analysis.

  20. Amplification without inversion, fast light and optical bistability in a duplicated two-level system

    Energy Technology Data Exchange (ETDEWEB)

    Ebrahimi Zohravi, Lida; Vafafard, Azar; Mahmoudi, Mohammad, E-mail: mahmoudi@znu.ac.ir

    2014-07-01

    The optical properties of a weak probe field in a duplicated two-level system are investigated in multi-photon resonance (MPR) condition and beyond it. It is shown that by changing the relative phase of applied fields, the absorption switches to the amplification without inversion in MPR condition. By applying the Floquet decomposition to the equations of motion beyond MPR condition, it is shown that the phase-dependent behavior is valid only in MPR condition. Moreover, it is demonstrated that the group velocity of light pulse can be controlled by the intensity of the applied fields and the gain-assisted superluminal light propagation (fast light) is obtained in this system. In addition, the optical bistability (OB) behavior of the system is studied beyond MPR condition. We apply an indirect incoherent pumping field to the system and it is found that the group velocity and OB behavior of the system can be controlled by the incoherent pumping rate. - Highlights: • We studied the optical properties of DTL system under MPR condition and beyond it. • By changing the relative phase, the absorption switches to the amplification without inversion in MPR condition. • The gain-assisted superluminal light propagation (fast light) is obtained in this system. • The optical bistability (OB) behavior of the system is studied beyond MPR condition. • The incoherent pumping rate has a major role in controlling the group velocity and OB behavior of the system.

  1. 85 km Long Reach PON System Using a Reflective SOA-EA Modulator and Distributed Raman Fiber Amplification

    DEFF Research Database (Denmark)

    Tafur Monroy, Idelfonso; Öhman, Filip; Yvind, Kresten;

    2006-01-01

    We report on a bidirectional 85 km long reach PON system supported by distributed fiber Raman amplification with a record 7.5 Gb/s remote carrier modulated upstream signal by employing a reflective SOA-EA monolithically integrated circuit......We report on a bidirectional 85 km long reach PON system supported by distributed fiber Raman amplification with a record 7.5 Gb/s remote carrier modulated upstream signal by employing a reflective SOA-EA monolithically integrated circuit...

  2. Micromachined polymerase chain reaction system for multiple DNA amplification of upper respiratory tract infectious diseases.

    Science.gov (United States)

    Liao, Chia-Sheng; Lee, Gwo-Bin; Wu, Jiunn-Jong; Chang, Chih-Ching; Hsieh, Tsung-Min; Huang, Fu-Chun; Luo, Ching-Hsing

    2005-01-15

    This paper presents a micro polymerase chain reaction (PCR) chip for the DNA-based diagnosis of microorganism genes and the detection of their corresponding antibiotic-resistant genes. The micro PCR chip comprises cheap biocompatible soda-lime glass substrates with integrated thin-film platinum resistors as heating/sensing elements, and is fabricated using micro-electro-mechanical-system (MEMS) techniques in a reliable batch-fabrication process. The heating and temperature sensing elements are made of the same material and are located inside the reaction chamber in order to ensure a uniform temperature distribution. This study performs the detection of several genes associated with upper respiratory tract infection microorganisms, i.e. Streptococcus pneumoniae, Haemopilus influenze, Staphylococcu aureus, Streptococcus pyogenes, and Neisseria meningitides, together with their corresponding antibiotic-resistant genes. The lower thermal inertia of the proposed micro PCR chip relative to conventional bench-top PCR systems enables a more rapid detection operation with reduced sample and reagent consumption. The experimental data reveal that the high heating and cooling rates of the system (20 and 10 degrees C/s, respectively) permit successful DNA amplification within 15 min. The micro PCR chip is also capable of performing multiple DNA amplification, i.e. the simultaneous duplication of multiple genes under different conditions in separate reaction wells. Compared with the large-scale PCR system, it is greatly advantageous for fast diagnosis of multiple infectious diseases. Multiplex PCR amplification of two DNA segments in the same well is also feasible using the proposed micro device. The developed micro PCR chip provides a crucial tool for genetic analysis, molecular biology, infectious disease detection, and many other biomedical applications. PMID:15590288

  3. High Intensity Mirror-Free Nanosecond Ytterbium Fiber Laser System in Master Oscillator Power Amplification

    Science.gov (United States)

    Chun-Lin, Louis Chang

    Rare-earth-doped fiber lasers and amplifiers are relatively easy to efficiently produce a stable and high quality laser beam in a compact, robust, and alignment-free configuration. Recently, high power fiber laser systems have facilitated wide spread applications in academics, industries, and militaries in replacement of bulk solid-state laser systems. The master oscillator power amplifier (MOPA) composed of a highly-controlled seed, high-gain preamplifiers, and high-efficiency power amplifiers are typically utilized to scale up the pulse energy, peak power, or average power. Furthermore, a direct-current-modulated nanosecond diode laser in single transverse mode can simply provide a compact and highly-controlled seed to result in the flexible output parameters, such as repetition rate, pulse duration, and even temporal pulse shape. However, when scaling up the peak power for high intensity applications, such a versatile diode-seeded nanosecond MOPA laser system using rare-earth-doped fibers is unable to completely save its own advantages compared to bulk laser systems. Without a strong seeding among the amplifiers, the guided amplified spontaneous amplification is easy to become dominant during the amplification, leading to the harmful self-lasing or pulsing effects, and the difficulty of the quantitative numerical comparison. In this dissertation, we study a high-efficiency and intense nanosecond ytterbium fiber MOPA system with good beam quality and stability for high intensity applications. The all-PM-fiber structure is achieved with the output extinction ratio of >12 dB by optimizing the interconnection of high power optical fibers. The diode-seeded MOPA configuration without parasitic stimulated amplification (PAS) is implemented using the double-pass scheme to extract energy efficiently for scaling peak power. The broadband PAS was studied experimentally, which matches well with our numerical simulation. The 1064-nm nanosecond seed was a direct

  4. Study of reconstruction methods for a time projection chamber with GEM gas amplification system

    International Nuclear Information System (INIS)

    A new e+e- linear collider with an energy range up to 1TeV is planned in an international collaboration: the International Linear Collider (ILC). This collider will be able to do precision measurements of the Higgs particle and of physics beyond the Standard Model. In the Large Detector Concept (LDC) - which is one proposal for a detector at the ILC - a Time Projection Chamber (TPC) is foreseen as the main tracking device. To meet the requirements on the resolution and to be able to work in the environment at the ILC, the application of new gas amplification technologies in the TPC is necessary. One option is an amplification system based on Gas Electron Multipliers (GEMs). Due to the - in comparison with older technologies - small spatial width of the signals, this technology poses new requirements on the readout structures and the reconstruction methods. In this work, the performance and the systematics of different reconstruction methods have been studied, based on data measured with a TPC prototype in high magnetic fields of up to 4T and data from a Monte Carlo simulation. The latest results of the achievable point resolution are presented and their limitations have been investigated. (orig.)

  5. Study of reconstruction methods for a time projection chamber with GEM gas amplification system

    Energy Technology Data Exchange (ETDEWEB)

    Diener, R.

    2006-12-15

    A new e{sup +}e{sup -} linear collider with an energy range up to 1TeV is planned in an international collaboration: the International Linear Collider (ILC). This collider will be able to do precision measurements of the Higgs particle and of physics beyond the Standard Model. In the Large Detector Concept (LDC) - which is one proposal for a detector at the ILC - a Time Projection Chamber (TPC) is foreseen as the main tracking device. To meet the requirements on the resolution and to be able to work in the environment at the ILC, the application of new gas amplification technologies in the TPC is necessary. One option is an amplification system based on Gas Electron Multipliers (GEMs). Due to the - in comparison with older technologies - small spatial width of the signals, this technology poses new requirements on the readout structures and the reconstruction methods. In this work, the performance and the systematics of different reconstruction methods have been studied, based on data measured with a TPC prototype in high magnetic fields of up to 4T and data from a Monte Carlo simulation. The latest results of the achievable point resolution are presented and their limitations have been investigated. (orig.)

  6. Development of single shot soft x-ray contact microscopy system for nano-scale dynamics measurement of living biological specimen

    Science.gov (United States)

    Kishimoto, Maki; Kado, Masataka; Ishino, Masahiko; Tamotsu, Satoshi; Yasuda, Keiko; Shinohara, Kunio

    2012-07-01

    We have been developing a picosecond single shot soft x-ray contact microscopy system for observing the nanometer-scale inner structure of the living biological specimen in a hydrated condition. The microscopy system consists of an intense IR pump laser system for generating laser-induced plasma as a soft x-ray source and x-ray microscope chamber. The pump laser system employs OPCPA (Optical Parametric Chirped Pulse Amplification) technique to obtain a high contrast pump laser pulse, and we can generate water-window x-rays effectively by combining it to an ultra-thin metal target. The x-ray microscope chamber is composed of a vacuum chamber, a focusing lens, a metal film target, an in-vacuum type sample holder. The pump laser pulse is focused on the metal film target with a focusing lens. The soft x-rays from the laser-induced plasma illuminates bio-specimens on the PMMA photo resist set in the in-vacuum sample holder. The photo resist is developed and the x-ray transmission image recorded on the photo resist is read out by AFM. We took x-ray images of hydrated Leydig cells from mouse testicle and demonstrated that the developed x-ray microscopy system has a spatial resolution of about 100 nm.

  7. Compact, high-repetition-rate OPCPA system for high harmonic generation

    Science.gov (United States)

    Matyschok, Jan; Binhammer, Thomas; Lang, Tino; Prochnow, Oliver; Rausch, Stefan; Rudawski, Piotr; Harth, Anne; Miranda, Miguel; Guo, Chen; Lorek, Eleonora; Mauritsson, Johan; Arnold, Cord L.; L'Huillier, Anne; Morgner, Uwe

    2014-03-01

    A compact, high-repetition rate optical parametric chirped pulse amplifier system emitting CEP-stable, few-cycle pulses with 10 μJ of pulse energy is reported for the purpose of high-order harmonic generation. The system is seeded from a commercially available, CEP-stabilized Ti:sapphire oscillator, delivering an octave-spanning spectrum from 600-1200 nm. The oscillator output serves on the one hand as broadband signal for the parametric amplification process and on the other hand as narrowband seed for an Ytterbium-based fiber preamplifier with subsequent main amplifiers and frequency doubling. Broadband parametric amplification up to 17 μJ at 200 kHz repetition rate was achieved in two 5 mm BBO crystals using non-collinear phase matching in the Poynting-vector-walk-off geometry. Efficient pulse compression down to 6.3 fs is achieved with chirped mirrors leading to a peak power exceeding 800 MW. We observed after warm-up time a stability of < 0.5 % rms over 100 min. Drifts of the CE-phase in the parametric amplifier part could be compensated by a slow feedback to the set point of the oscillator phase lock. The CEP stability was measured to be better than 80 mrad over 15 min (3 ms integration time). The experimentally observed output spectra and energies could be well reproduced by simulations of the parametric amplification process based on a (2+1)-dimensional nonlinear propagation code, providing important insight for future repetition rate scaling of OPCPA systems. The system is well-suited for attosecond science experiments which benefit from the high repetition rate. First results for high-order harmonic generation in argon will be presented.

  8. Effects of temperature and ground-state coherence decay on enhancement and amplification in a Delta atomic system

    CERN Document Server

    Manjappa, Manukumara; Karigowda, Asha; Narayanan, Andal; Sanders, Barry C

    2014-01-01

    We study phase-sensitive amplification of electromagnetically induced transparency in a warm $^{85}$Rb vapor wherein a microwave driving field couples the two lower energy states of a $\\Lambda$ energy-level system thereby transforming into a $\\Delta$ system. Our theoretical description includes effects of ground-state coherence decay and temperature effects. In particular, we demonstrate that driving-field enhanced electromagnetically induced transparency is robust against significant loss of coherence between ground states. We also show, that for specific field intensities, a threshold rate of ground-state coherence decay exists at every temperature. This threshold separates the probe-transmittance behavior into two regimes: probe amplification vs. probe attenuation. Thus, electromagnetically induced transparency plus amplification is possible at any temperature in a $\\Delta$ system.

  9. Amplification mechanism and effects of spontaneously generated coherence on the probe gain in a four-level system

    Institute of Scientific and Technical Information of China (English)

    Xu Wei-Hua; Wu Jin-Hui; Gao Jin-Yue

    2004-01-01

    We investigate the amplification mechanism in a four-level system by both the density-matrix and quantum-jump approaches. We show that the asymmetry between three-photon stimulated emission and one-photon absorption process is responsible for the inversionless amplification of the probe field. We also investigate the effects of spontaneously generated coherence (SGC) on the probe gain, and find that due to the SGC, the probe gain can be greatly enhanced and can be modulated by changing the relative phase between the applied fields.

  10. Large Enhancement of Probe Amplification with Population Inversion in a Four-Level Atomic System with Vacuum-Induced Coherence

    Institute of Scientific and Technical Information of China (English)

    LI Jia-Hua; YANG Wen-Xing; LUO Jin-Ming; PENG Ju-Cun

    2005-01-01

    In this paper, we discuss and analyze theoretically probe absorption-amplification response in a four-level coherent atomic system with vacuum-induced coherence via changing the sign of the parameter f, with f denoting the ratio of a pair of dipole moments associated with a doublet of closely upper hyperfine sublevels. We find that the amplitude of the probe amplification for the case f = -1 can be about one order of magnitude larger than that achievable for the case f = 1. In addition, with respect to the case f = -1 the probe amplification can be maintained all the time with weak incoherent pumping for a wide range of the probe detuning.

  11. A Novel Femtosecond Laser System for Attosecond Pulse Generation

    OpenAIRE

    Jianqiang Zhu; Xinglong Xie; Meizhi Sun; Qunyu Bi; Jun Kang

    2012-01-01

    We report a novel ultrabroadband high-energy femtosecond laser to be built in our laboratory. A 7-femtosecond pulse is firstly stretched by an eight-pass offner stretcher with a chirp rate 15 ps/nm, and then energy-amplified by a two-stage optical parametric chirped pulse amplification (OPCPA). The first stage as preamplification with three pieces of BBO crystals provides the majority of the energy gain. At the second stage, a YCOB crystal with the aperture of ~50 mm is used instead of the K...

  12. The all-diode-pumped laser system POLARIS——an experimentalist’s tool generating ultra-high contrast pulses with high energy

    Institute of Scientific and Technical Information of China (English)

    Marco; Hornung; Hartmut; Liebetrau; Andreas; Seidel; Sebastian; Keppler; Alexander; Kessler; Jrg; Krner; Marco; Hellwing; Frank; Schorcht; Diethard; Klpfel; Ajay; K.Arunachalam; Georg; A.Becker; Alexander; Svert; Jens; Polz; Joachim; Hein; Malte; C.Kaluza

    2014-01-01

    The development,the underlying technology and the current status of the fully diode-pumped solid-state laser system POLARIS is reviewed.Currently,the POLARIS system delivers 4 J energy,144 fs long laser pulses with an ultra-high temporal contrast of 5 × 1012 for the ASE,which is achieved using a so-called double chirped-pulse amplification scheme and cross-polarized wave generation pulse cleaning.By tightly focusing,the peak intensity exceeds 3.5 × 1020 W cm-2.These parameters predestine POLARIS as a scientific tool well suited for sophisticated experiments,as exemplified by presenting measurements of accelerated proton energies.Recently,an additional amplifier has been added to the laser chain.In the ramp-up phase,pulses from this amplifier are not yet compressed and have not yet reached the anticipated energy.Nevertheless,an output energy of 16.6 J has been achieved so far.

  13. Dynamic Characteristics of a Hydraulic Amplification Mechanism for Large Displacement Actuators Systems

    Directory of Open Access Journals (Sweden)

    Xavier Arouette

    2010-03-01

    Full Text Available We have developed a hydraulic displacement amplification mechanism (HDAM and studied its dynamic response when combined with a piezoelectric actuator. The HDAM consists of an incompressible fluid sealed in a microcavity by two largely deformable polydimethylsiloxane (PDMS membranes. The geometry with input and output surfaces having different cross-sectional areas creates amplification. By combining the HDAM with micro-actuators, we can amplify the input displacement generated by the actuators, which is useful for applications requiring large deformation, such as tactile displays. We achieved a mechanism offering up to 18-fold displacement amplification for static actuation and 12-fold for 55 Hz dynamic actuation.

  14. Dynamic characteristics of a hydraulic amplification mechanism for large displacement actuators systems.

    Science.gov (United States)

    Arouette, Xavier; Matsumoto, Yasuaki; Ninomiya, Takeshi; Okayama, Yoshiyuki; Miki, Norihisa

    2010-01-01

    We have developed a hydraulic displacement amplification mechanism (HDAM) and studied its dynamic response when combined with a piezoelectric actuator. The HDAM consists of an incompressible fluid sealed in a microcavity by two largely deformable polydimethylsiloxane (PDMS) membranes. The geometry with input and output surfaces having different cross-sectional areas creates amplification. By combining the HDAM with micro-actuators, we can amplify the input displacement generated by the actuators, which is useful for applications requiring large deformation, such as tactile displays. We achieved a mechanism offering up to 18-fold displacement amplification for static actuation and 12-fold for 55 Hz dynamic actuation. PMID:22319281

  15. Droplet-Free Digital Enzyme-Linked Immunosorbent Assay Based on a Tyramide Signal Amplification System.

    Science.gov (United States)

    Akama, Kenji; Shirai, Kentaro; Suzuki, Seigo

    2016-07-19

    Digital enzyme-linked immunosorbent assay (ELISA) is a single molecule counting technology and is one of the most sensitive immunoassay methods. The key aspect of this technology is to concentrate enzyme reaction products from a single target molecule in femtoliter droplets. This study presents a novel Digital ELISA that does not require droplets; instead, enzyme reaction products are concentrated using a tyramide signal amplification system. In our method, tyramide substrate reacts with horseradish peroxidase (HRP) labeled with an immunocomplex on beads, and the substrate is converted into short-lived radical intermediates. By adjusting the bead concentration in the HRP-tyramide reaction and conducting the reaction using freely moving beads, tyramide radicals are deposited only on beads labeled with HRP and there is no diffusion to other beads. Consequently, the fluorescence signal is localized on a portion of the beads, making it possible to count the number of labeled beads digitally. The performance of our method was demonstrated by detecting hepatitis B surface antigen with a limit of detection of 0.09 mIU/mL (139 aM) and a dynamic range of over 4 orders of magnitude. The obtained limit of detection represents a >20-fold higher sensitivity than conventional ELISA. Our method has potential applications in simple in vitro diagnostic systems for detecting ultralow concentrations of protein biomarkers.

  16. Droplet-Free Digital Enzyme-Linked Immunosorbent Assay Based on a Tyramide Signal Amplification System.

    Science.gov (United States)

    Akama, Kenji; Shirai, Kentaro; Suzuki, Seigo

    2016-07-19

    Digital enzyme-linked immunosorbent assay (ELISA) is a single molecule counting technology and is one of the most sensitive immunoassay methods. The key aspect of this technology is to concentrate enzyme reaction products from a single target molecule in femtoliter droplets. This study presents a novel Digital ELISA that does not require droplets; instead, enzyme reaction products are concentrated using a tyramide signal amplification system. In our method, tyramide substrate reacts with horseradish peroxidase (HRP) labeled with an immunocomplex on beads, and the substrate is converted into short-lived radical intermediates. By adjusting the bead concentration in the HRP-tyramide reaction and conducting the reaction using freely moving beads, tyramide radicals are deposited only on beads labeled with HRP and there is no diffusion to other beads. Consequently, the fluorescence signal is localized on a portion of the beads, making it possible to count the number of labeled beads digitally. The performance of our method was demonstrated by detecting hepatitis B surface antigen with a limit of detection of 0.09 mIU/mL (139 aM) and a dynamic range of over 4 orders of magnitude. The obtained limit of detection represents a >20-fold higher sensitivity than conventional ELISA. Our method has potential applications in simple in vitro diagnostic systems for detecting ultralow concentrations of protein biomarkers. PMID:27322525

  17. Femtosecond pulse generation and amplification in Yb-doped fibre oscillator–amplifier system

    Indian Academy of Sciences (India)

    P K Mukhopadhyay

    2010-11-01

    In recent times ytterbium (Yb) doped fibre-based mode-locked master oscillator and power amplifier have attracted a great deal of interest because of their inherent advantages like flexibility, reliability, compactness, high power handling capability and diffraction limited output beam quality as compared to the solid-state counterpart. But, to successfully develope of high-power femtosecond oscillator–amplifier system based on Yb- doped fibre, an appropriate choice of the mode-locking regime and the amplifier geometry are required. Development of an all-fibre integrated high-power Yb-doped fibre oscillator–amplifier system in which the advantages of a fibre-based system can be fully exploited remained a challenge as it requires the careful optimization of dispersion, nonlinearity, gain and ASE contribution. In this article, femto-second pulse generation in Yb-doped fibre oscillator in different mode-locking regimes are reviewed and the details of development and characterization of an all-fibre, high-power, low-noise amplifier system seeded by an all-normal-dispersion mode-locked Yb-doped fibre laser oscillator is described. More than 10 W of average power is obtained from the fibre oscillator–amplifier system at a repetition rate of 43 MHz with diffraction-limited beam quality. Amplified pulses are de-chirped to sub-160 fs duration in a grating compressor. This is the first 10 W-level source of femtosecond pulses with completely fibre-integrated amplification comprised of commercially available components.

  18. Dynamic parabolic pulse generation using temporal shaping of wavelength to time mapped pulses.

    Science.gov (United States)

    Nguyen, Dat; Piracha, Mohammad Umar; Mandridis, Dimitrios; Delfyett, Peter J

    2011-06-20

    Self-phase modulation in fiber amplifiers can significantly degrade the quality of compressed pulses in chirped pulse amplification systems. Parabolic pulses with linear frequency chirp are suitable for suppressing nonlinearities, and to achieve high peak power pulses after compression. In this paper, we present an active time domain technique to generate parabolic pulses for chirped pulse amplification applications. Pulses from a mode-locked laser are temporally stretched and launched into an amplitude modulator, where the drive voltage is designed using the spectral shape of the input pulse and the transfer function of the modulator, resulting in the generation of parabolic pulses. Experimental results of pulse shaping with a pulse train from a mode-locked laser are presented, with a residual error of less than 5%. Moreover, an extinction ratio of 27 dB is achieved, which is ideal for chirped pulse amplification applications.

  19. Theory of noiseless phase-mixing amplification in a cavity optomechanical system

    CERN Document Server

    Ockeloen-Korppi, C F; Sillanpää, M A; Massel, F

    2016-01-01

    The investigation of the ultimate limits imposed by quantum mechanics on amplification represents an important topic both on a fundamental level and from the perspective of potential applications. We propose here a novel setup for an optomechanical amplifier, constituted by a mechanical resonator dispersively coupled to an optomechanical cavity asymmetrically driven around both mechanical sidebands. We show that, on general grounds, the present amplifier operates in a novel regime-- which we here call phase-mixing amplification. At the same time, for a suitable choice of parameters, the amplifier proposed here operates as a phase-sensitive amplifier. Furthermore, we show that both configurations allow amplification below the standard quantum limit in a parameter range compatible with current experiments in microwave circuit optomechanics.

  20. 小麦MITE扩增体系的建立%Establishment of MITE Amplification System in the Wheat Study

    Institute of Scientific and Technical Information of China (English)

    谢欢; 杨文香; 彭巧慧; 赵丽娟; 刘力伟; 张娜; 刘大群

    2014-01-01

    Thatcher and 23 of wheat leaf rust resistance near isogenic lines in Thatcher background were chosen as materials in this experiment. Research on the establishment of MITE amplification system was carried out. 27 of the 56 primer pairs were amplified stably,reaction system and different annealing temperature of primers were con-firmed for amplification of MITE ( Miniature inverted repeat transposable elements) .%以Thatcher及23个以Thatcher为遗传背景的小麦抗叶锈病近等基因系为材料,开展了MITE扩增体系的建立研究,获得了适合小麦MITE分子标记的扩增体系及不同引物的退火温度,所用56对引物有27对获得稳定扩增。

  1. Comparison of colorimetric, fluorescent, and enzymatic amplification substrate systems in an enzyme immunoassay for detection of DNA-RNA hybrids.

    OpenAIRE

    Coutlee, F; Viscidi, R. P.; Yolken, R. H.

    1989-01-01

    The monoclonal antibody solution hybridization assay is a novel enzyme immunoassay for detection of RNA with a biotinylated DNA probe. To increase the sensitivity of this test, a fluorescent substrate and an enzymatic amplification cycling system were compared with a conventional colorigenic substrate for alkaline phosphatase. The fluorescent, cycling, and colorigenic substrates detected, respectively, 10, 10, and 100 amol of unbound alkaline phosphatase in 2 h. With a prolonged incubation pe...

  2. Nondegenerate parametric generation of 2.2-mJ, few-cycle 2.05-μm pulses using a mixed phase matching scheme

    International Nuclear Information System (INIS)

    We describe the production of 2.2-mJ, ∼6 optical-cycle-long mid-infrared laser pulses with a carrier wavelength of 2.05 μm in a two-stage β-BaB2O4 nondegenerate optical parametric amplifier design with a mixed phase matching scheme, which is pumped by a standard Ti:sapphire chirped-pulse amplification system. It is demonstrated that relatively high pulse energies, short pulse durations, high stability, and excellent beam profiles can be obtained using this simple approach, even without the use of optical parametric chirped-pulse amplification

  3. Ultrafast, laser-based, x-ray science: the dawn of atomic-scale cinematography

    Energy Technology Data Exchange (ETDEWEB)

    Barty, C.P.J. [University of California, Department of Applied Mechanics and Engineering Science, Urey Hall, Mali Code 0339, San Diego, La Jolla, CA (United States)

    2000-03-01

    The characteristics of ultrafast chirped pulse amplification systems are reviewed. Application of ultrafast chirped pulse amplification to the generation of femtosecond, incoherent, 8-keV line radiation is outlined and the use of femtosecond laser-based, x-rays for novel time-resolved diffraction studies of crystalline dynamics with sub-picosecond temporal resolution and sub-picometer spatial resolution is reviewed in detail. Possible extensions of laser-based, x-ray technology and evaluation of alternative x-ray approaches for time-resolved studies of the atomic scale dynamics are given. (author)

  4. Absorption-amplification response with or without spontaneously generated coherence effect in a four-level atomic system

    Institute of Scientific and Technical Information of China (English)

    李家华; 杨文星; 彭菊村

    2004-01-01

    We discuss and analyze the absorption properties of a weak probe field in a typical four-level atomic system in the presence of a spontaneously generated coherence (SGC) term. The influences of the SGC and a coherent pump field on the probe absorption-amplification are investigated. The results show that the absorption of such a weak probe field can be dramatically enhanced due to the SGC effect. At the same time, the probe-absorption profile exhibits a two-peak structure and the probe-absorption peak gradually decreases as the pump intensity increases. On the contrary, the amplification of such a weak probe field near the line center of the probe transition can be achieved by adjusting the coherent pump field intensity in the absence of the SGC effect.

  5. A lab-on-a-chip system with integrated sample preparation and loop-mediated isothermal amplification for rapid and quantitative detection of Salmonella spp. in food samples

    DEFF Research Database (Denmark)

    Sun, Yi; Than Linh, Quyen; Hung, Tran Quang;

    2015-01-01

    amplification (LAMP) for rapid and quantitative detection of Salmonella spp. in food samples. The whole diagnostic procedures including DNA isolation, isothermal amplification, and real-time detection were accomplished in a single chamber. Up to eight samples could be handled simultaneously and the system...... was capable to detect Salmonella at concentration of 50 cells per test within 40 min. The simple design, together with high level of integration, isothermal amplification, and quantitative analysis of multiple samples in short time will greatly enhance the practical applicability of the LOC system for rapid...

  6. Optofluidic analysis system for amplification-free, direct detection of Ebola infection

    Science.gov (United States)

    Cai, H.; Parks, J. W.; Wall, T. A.; Stott, M. A.; Stambaugh, A.; Alfson, K.; Griffiths, A.; Mathies, R. A.; Carrion, R.; Patterson, J. L.; Hawkins, A. R.; Schmidt, H.

    2015-09-01

    The massive outbreak of highly lethal Ebola hemorrhagic fever in West Africa illustrates the urgent need for diagnostic instruments that can identify and quantify infections rapidly, accurately, and with low complexity. Here, we report on-chip sample preparation, amplification-free detection and quantification of Ebola virus on clinical samples using hybrid optofluidic integration. Sample preparation and target preconcentration are implemented on a PDMS-based microfluidic chip (automaton), followed by single nucleic acid fluorescence detection in liquid-core optical waveguides on a silicon chip in under ten minutes. We demonstrate excellent specificity, a limit of detection of 0.2 pfu/mL and a dynamic range of thirteen orders of magnitude, far outperforming other amplification-free methods. This chip-scale approach and reduced complexity compared to gold standard RT-PCR methods is ideal for portable instruments that can provide immediate diagnosis and continued monitoring of infectious diseases at the point-of-care.

  7. Diagnostic value of nine nucleic acid amplification test systems for Mycobacterium tuberculosis complex

    Directory of Open Access Journals (Sweden)

    Gülnur Tarhan

    2015-09-01

    Full Text Available Objective: In this study, nine commercial Nucleic Acid Amplification Test Systems (NAATs were evaluated for diagnostic performance of Mycobacterium tuberculosis complex (MTBC from smear positive sputum species (SPss and smear negative sputum specimens (SNss. Methods: Sixty SPss and 55 SNss were examined icroscopically by Ehrlich Ziehl Neelsen (EZN staining method, and also inoculated on Löwenstein Jensen (LJ medium for culture. The sensitivity and specificity of nine NAATs were calculated according to LJ culture method accepted as gold standard. Results: When LJ culture results were taken as gold standard; the sensitivity rates of method COBAS Amplicor MTB (Method A, GenProbe MTD (Method B, Cobas TaqMan MTB PCR Method C, iCycler iQ RT PCR (Method D, TaqMan PCR AB 5700 (Method E, TaqMan PCR AB7700 (Method F, ightCycler® 480 RT PCR (Method G, Rotor Gene RT PCR (Method H and the AdvanSure TB/NTM RT PCR (Method I for SPss were 98.3 %, 93.3 %, 96.7 %, 100 %, 93.3 %, 100 %, 100 %, 100 % and 100 %, respectively. The sensitivity was 53.84% for the methods A, B, D, E, G and I; 38.46% for the method C and H; 61.5% for the method F for the method I in SNss. There were no statistical significant differences between the nine NAATs (p≥0.05. The specificity was 100% for all nine NAATs in SNss. The positivity rates of methods were 53.8% for methods A, B, D, E, G, I; 38.5% for methods C and H, and 61.5% for method F in SNss. These rates were 100% for D, F, G, H and I; 98.3% for method A; 96.7% for method C; 93,3% for methods B and E in SPss. Statistical analysis showed that there was no statistically significant differences among the nine NAATs (p≥0.05. Conclusion: It is concluded that the nine NAATs might be useful for detecting MTBC from SPss, but not effective for SNss. J Microbiol Infect Dis 2015;5(3: 103-109

  8. Entanglement Amplification in the Non-Perturbative Dynamics of Modular Quantum Systems

    OpenAIRE

    Bayat A.; Giampaolo S.M.; Illuminati F.; Plenio M.B.

    2013-01-01

    We analyze the conditions for entanglement amplification between distant and not directly interacting quantum objects by their common coupling to media with static modular structure and subject to a local (single-bond) quenched dynamics. We show that in the non-perturbative regime of the dynamics the initial end-to-end entanglement is strongly amplified and, moreover, can be distributed efficiently between distant objects. Due to its intrinsic local and non-perturbative nature the dynamics is...

  9. Nanoscale Electrochemical Sensor Arrays: Redox Cycling Amplification in Dual-Electrode Systems.

    Science.gov (United States)

    Wolfrum, Bernhard; Kätelhön, Enno; Yakushenko, Alexey; Krause, Kay J; Adly, Nouran; Hüske, Martin; Rinklin, Philipp

    2016-09-20

    Micro- and nanofabriation technologies have a tremendous potential for the development of powerful sensor array platforms for electrochemical detection. The ability to integrate electrochemical sensor arrays with microfluidic devices nowadays provides possibilities for advanced lab-on-a-chip technology for the detection or quantification of multiple targets in a high-throughput approach. In particular, this is interesting for applications outside of analytical laboratories, such as point-of-care (POC) or on-site water screening where cost, measurement time, and the size of individual sensor devices are important factors to be considered. In addition, electrochemical sensor arrays can monitor biological processes in emerging cell-analysis platforms. Here, recent progress in the design of disease model systems and organ-on-a-chip technologies still needs to be matched by appropriate functionalities for application of external stimuli and read-out of cellular activity in long-term experiments. Preferably, data can be gathered not only at a singular location but at different spatial scales across a whole cell network, calling for new sensor array technologies. In this Account, we describe the evolution of chip-based nanoscale electrochemical sensor arrays, which have been developed and investigated in our group. Focusing on design and fabrication strategies that facilitate applications for the investigation of cellular networks, we emphasize the sensing of redox-active neurotransmitters on a chip. To this end, we address the impact of the device architecture on sensitivity, selectivity as well as on spatial and temporal resolution. Specifically, we highlight recent work on redox-cycling concepts using nanocavity sensor arrays, which provide an efficient amplification strategy for spatiotemporal detection of redox-active molecules. As redox-cycling electrochemistry critically depends on the ability to miniaturize and integrate closely spaced electrode systems, the

  10. Nanoscale Electrochemical Sensor Arrays: Redox Cycling Amplification in Dual-Electrode Systems.

    Science.gov (United States)

    Wolfrum, Bernhard; Kätelhön, Enno; Yakushenko, Alexey; Krause, Kay J; Adly, Nouran; Hüske, Martin; Rinklin, Philipp

    2016-09-20

    Micro- and nanofabriation technologies have a tremendous potential for the development of powerful sensor array platforms for electrochemical detection. The ability to integrate electrochemical sensor arrays with microfluidic devices nowadays provides possibilities for advanced lab-on-a-chip technology for the detection or quantification of multiple targets in a high-throughput approach. In particular, this is interesting for applications outside of analytical laboratories, such as point-of-care (POC) or on-site water screening where cost, measurement time, and the size of individual sensor devices are important factors to be considered. In addition, electrochemical sensor arrays can monitor biological processes in emerging cell-analysis platforms. Here, recent progress in the design of disease model systems and organ-on-a-chip technologies still needs to be matched by appropriate functionalities for application of external stimuli and read-out of cellular activity in long-term experiments. Preferably, data can be gathered not only at a singular location but at different spatial scales across a whole cell network, calling for new sensor array technologies. In this Account, we describe the evolution of chip-based nanoscale electrochemical sensor arrays, which have been developed and investigated in our group. Focusing on design and fabrication strategies that facilitate applications for the investigation of cellular networks, we emphasize the sensing of redox-active neurotransmitters on a chip. To this end, we address the impact of the device architecture on sensitivity, selectivity as well as on spatial and temporal resolution. Specifically, we highlight recent work on redox-cycling concepts using nanocavity sensor arrays, which provide an efficient amplification strategy for spatiotemporal detection of redox-active molecules. As redox-cycling electrochemistry critically depends on the ability to miniaturize and integrate closely spaced electrode systems, the

  11. Optical chirped beam amplification and propagation

    Science.gov (United States)

    Barty, Christopher P.

    2004-10-12

    A short pulse laser system uses dispersive optics in a chirped-beam amplification architecture to produce high peak power pulses and high peak intensities without the potential for intensity dependent damage to downstream optical components after amplification.

  12. Noise amplification by chaotic dynamics in a delayed feedback laser system and its application to nondeterministic random bit generation.

    Science.gov (United States)

    Sunada, Satoshi; Harayama, Takahisa; Davis, Peter; Tsuzuki, Ken; Arai, Ken-Ichi; Yoshimura, Kazuyuki; Uchida, Atsushi

    2012-12-01

    We present an experimental method for directly observing the amplification of microscopic intrinsic noise in a high-dimensional chaotic laser system, a laser with delayed feedback. In the experiment, the chaotic laser system is repeatedly switched from a stable lasing state to a chaotic state, and the time evolution of an ensemble of chaotic states starting from the same initial state is measured. It is experimentally demonstrated that intrinsic noises amplified by the chaotic dynamics are transformed into macroscopic fluctuating signals, and the probability density of the output light intensity actually converges to a natural invariant probability density in a strongly chaotic regime. Moreover, with the experimental method, we discuss the application of the chaotic laser systems to physical random bit generators. It is experimentally shown that the convergence to the invariant density plays an important role in nondeterministic random bit generation, which could be desirable for future ultimate secure communication systems.

  13. 60 GHz OCS mm-wave generation for ROF system based on saturated parametric amplification effect in HNLF

    Institute of Scientific and Technical Information of China (English)

    LI Wen-jing; SANG Xin-zhu; YUAN Jin-hui; WANG Kui-ru; YU Chong-xiu; XIN Xiang-jun

    2010-01-01

    @@ A novel approach to generate 60 GHz optical carrier suppression(OCS)millimeter-wave(mm-wave)signal based on the saturated optical parametric amplification(OPA)effect in high non-linear fiber(HNLF)is investigated.In the proposed system,the OPA effect occurs when the signal and pump with 30 GHz frequency interval are set into the high non-linear fiber.By controlling the length of HNLF,OPA effect saturates,and the pump power is delivered in a large extent to the signal and idler light,so a 60 GHz OCS ram-wave is generated.The system does not need high-speed external modulator,high-frequency vibration source or narrow-band filter,which greatly reduces the cost and improves the stability of the radio over fiber(ROF)system.Results show that the 10 Gb/s downstream signal can be transmitted with negligible power penalty.

  14. Double regenerative amplification of picosecond pulses

    Science.gov (United States)

    Bai, Zhen-ao; Chen, Li-yuan; Bai, Zhen-xu; Chen, Meng; Li, Gang

    2012-04-01

    An double Nd:YAG regenerative amplification picosecond pulse laser is demonstrated under the semiconductor saturable absorption mirror(SESAM) mode-locking technology and regenerative amplification technology, using BBO crystal as PC electro-optic crystal. The laser obtained is 20.71ps pulse width at 10 KHz repetition rate, and the energy power is up to 4W which is much larger than the system without pre-amplification. This result will lay a foundation for the following amplification.

  15. Electron Transfer Reactivity Patterns at Chemically Modified Electrodes: Fundamentals and Application to the Optimization of Redox Recycling Amplification Systems

    Energy Technology Data Exchange (ETDEWEB)

    Bergren, Adam Johan [Iowa State Univ., Ames, IA (United States)

    2006-01-01

    Electroanalytical chemistry is often utilized in chemical analysis and Fundamental studies. Important advances have been made in these areas since the advent of chemically modified electrodes: the coating of an electrode with a chemical film in order to impart desirable, and ideally, predictable properties. These procedures enable the exploitation of unique reactivity patterns. This dissertation presents studies that investigate novel reaction mechanisms at self-assembled monolayers on gold. In particular, a unique electrochemical current amplification scheme is detailed that relies on a selective electrode to enable a reactivity pattern that results in regeneration of the analyte (redox recycling). This regenerating reaction can occur up to 250 times for each analyte molecule, leading to a notable enhancement in the observed current. The requirements of electrode selectivity and the resulting amplification and detection limit improvements are described with respect to the heterogeneous and homogeneous electron transfer rates that characterize the system. These studies revealed that the heterogeneous electrolysis of the analyte should ideally be electrochemically reversible, while that for the regenerating agent should be held to a low level. Moreover, the homogeneous reaction that recycles the analyte should occur at a rapid rate. The physical selectivity mechanism is also detailed with respect to the properties of the electrode and redox probes utilized. It is shown that partitioning of the analyte into/onto the adlayer leads to the extraordinary selectivity of the alkanethiolate monolayer modified electrode. Collectively, these studies enable a thorough understanding of the complex electrode mechanism required for successful redox recycling amplification systems, Finally, in a separate (but related) study, the effect of the akyl chain length on the heterogeneous electron transfer behavior of solution-based redox probes is reported, where an odd-even oscillation

  16. Quantum interference effects on the probe amplification without and with inversion in a four-level system

    Institute of Scientific and Technical Information of China (English)

    Zhang Bing; Xu Wei-Hua; Zhang Hui-Fang; Gao Jin-Yue

    2004-01-01

    A four-level system driven by two coherent fields is considered. It is shown that in the presence of an incoherent pump, the probe gain at a short wavelength can be achieved due to the quantum interference. Our density matrix calculation provides the conditions for probe amplification from different origins, including gain without population inversion on any state basis, gain with population inversion on the dressed-state basis, and gain with population inversion on the bare-state basis. Also, by controlling the Rabi frequency of the coupling field a total change from non-inversion to inversion can be achieved which does not depend on the intensity of the incoherent pump.

  17. Short-pulse propagation in fiber optical parametric amplifiers

    DEFF Research Database (Denmark)

    Cristofori, Valentina

    Fiber optical parametric amplifiers (FOPAs) are attractive because they can provide large gain over a broad range of central wavelengths, depending only on the availability of a suitable pump laser. In addition, FOPAs are suitable for the realization of all-optical signal processing functionalities...... is implemented to obtain an all-fiber system. The advantages of all fiber-systems are related to their reliability, long-term stability and compactness. Fiber optical parametric chirped pulse amplification is promising for the amplification of such signals thanks to the inherent compatibility of FOPAs with fiber...... optical systems and high gain over broad bandwidths. In particular, the amplification of 400 fs pulses is investigated in a single-pump fiber optical chirped pulse amplification sc heme. First, a dynamic characterization is carried out both in unsaturated and saturated regimes and, then, amplification...

  18. A versatile-deployable bacterial detection system for food and environmental safety based on LabTube-automated DNA purification, LabReader-integrated amplification, readout and analysis.

    Science.gov (United States)

    Hoehl, Melanie M; Bocholt, Eva Schulte; Kloke, Arne; Paust, Nils; von Stetten, Felix; Zengerle, Roland; Steigert, Juergen; Slocum, Alexander H

    2014-06-01

    Contamination of foods is a public health hazard that episodically causes thousands of deaths and sickens millions worldwide. To ensure food safety and quality, rapid, low-cost and easy-to-use detection methods are desirable. Here, the LabSystem is introduced for integrated, automated DNA purification, amplification and detection. It consists of a disposable, centrifugally driven DNA purification platform (LabTube) and a low-cost UV/vis-reader (LabReader). For demonstration of the LabSystem in the context of food safety, purification of Escherichia coli (non-pathogenic E. coli and pathogenic verotoxin-producing E. coli (VTEC)) in water and milk and the product-spoiler Alicyclobacillus acidoterrestris (A. acidoterrestris) in apple juice was integrated and optimized in the LabTube. Inside the LabReader, the purified DNA was amplified, readout and analyzed using both qualitative isothermal loop-mediated DNA amplification (LAMP) and quantitative real-time PCR. For the LAMP-LabSystem, the combined detection limits for purification and amplification of externally lysed VTEC and A. acidoterrestris are 10(2)-10(3) cell-equivalents. In the PCR-LabSystem for E. coli cells, the quantification limit is 10(2) cell-equivalents including LabTube-integrated lysis. The demonstrated LabSystem only requires a laboratory centrifuge (to operate the disposable, fully closed LabTube) and a low-cost LabReader for DNA amplification, readout and analysis. Compared with commercial DNA amplification devices, the LabReader improves sensitivity and specificity by the simultaneous readout of four wavelengths and the continuous readout during temperature cycling. The use of a detachable eluate tube as an interface affords semi-automation of the LabSystem, which does not require specialized training. It reduces the hands-on time from about 50 to 3 min with only two handling steps: sample input and transfer of the detachable detection tube.

  19. Sub 100-fs, 5.2-$\\mu$m ZGP Parametric Amplifier Driven by a ps Ho:YAG Chirped Pulse Amplifier and its application to high harmonic generation

    CERN Document Server

    Kanai, Tsuneto; Kangaparambil, Sarayoo Sasidharan; Hoogland, Heinar; Holzwarth, Ronald; Pugžlys, Audrius; Baltuška, Andrius

    2016-01-01

    We report a 1 kHz repetition-rate mid-IR (MIR) optical parametric amplifier (OPA) system operating at a central wavelength of 5.2 $\\mu$m with the tail-to-tail spectrum extending over 1.5 $\\mu$m and delivering 40 $\\mu$J pulses that are compressed to 99 fs (5.6 optical cycles). Also we develop a novel pulse compression scheme for further pulse compression and wavelength tunability. As the first application of this laser system, we generated high harmonics in bulk ZnSe above the bandgap, dense exciton generation after 10-photon absorption, high order sum- and difference-frequency generation, ultrafast transition in the conduction band, which reflects the structure of conduction bands.

  20. A Portable Automatic Endpoint Detection System for Amplicons of Loop Mediated Isothermal Amplification on Microfluidic Compact Disk Platform

    Directory of Open Access Journals (Sweden)

    Shah Mukim Uddin

    2015-03-01

    Full Text Available In recent years, many improvements have been made in foodborne pathogen detection methods to reduce the impact of food contamination. Several rapid methods have been developed with biosensor devices to improve the way of performing pathogen detection. This paper presents an automated endpoint detection system for amplicons generated by loop mediated isothermal amplification (LAMP on a microfluidic compact disk platform. The developed detection system utilizes a monochromatic ultraviolet (UV emitter for excitation of fluorescent labeled LAMP amplicons and a color sensor to detect the emitted florescence from target. Then it processes the sensor output and displays the detection results on liquid crystal display (LCD. The sensitivity test has been performed with detection limit up to 2.5 × 10−3 ng/µL with different DNA concentrations of Salmonella bacteria. This system allows a rapid and automatic endpoint detection which could lead to the development of a point-of-care diagnosis device for foodborne pathogens detection in a resource-limited environment.

  1. Novel system uses probasin-based promoter, transcriptional silencers and amplification loop to induce high-level prostate expression

    Directory of Open Access Journals (Sweden)

    Yu Hong

    2007-02-01

    Full Text Available Abstract Background Despite several effective treatment options available for prostate cancer, it remains the second leading cause of cancer death in American men. Thus, there is a great need for new treatments to improve outcomes. One such strategy is to eliminate cancer through the expression of cytotoxic genes specifically in prostate cells by gene therapy vectored delivery. To prevent systemic toxicity, tissue- and/or cancer-specific gene expression is required. However, the use of tissue- or cancer-specific promoters to target transgene expression has been hampered by their weak activity. Results To address this issue, we have developed a regulation strategy that includes feedback amplification of gene expression along with a differentially suppressible tetracycline regulated expression system (DiSTRES. By differentially suppressing expression of the tetracycline-regulated transcriptional activator (tTA and silencer (tTS genes based on the cell origin, this leads to the activation and silencing of the TRE promoter, respectively. In vitro transduction of LNCaP cells with Ad/GFPDiSTRES lead to GFP expression levels that were over 30-fold higher than Ad/CMV-GFP. Furthermore, Ad/FasL-GFPDiSTRES demonstrated cytotoxic effects in prostate cancer cells known to be resistant to Fas-mediated apoptosis. Conclusion Prostate-specific regulation from the DiSTRES system, therefore, serves as a promising new regulation strategy for future applications in the field of cancer gene therapy and gene therapy as a whole.

  2. Detection and identification of Trichophyton tonsurans from clinical isolates and hairbrush samples by loop-mediated isothermal amplification system.

    Science.gov (United States)

    Yo, Ayaka; Yamamoto, Mikachi; Nakayama, Takako; Ishikawa, Jun; Makimura, Koichi

    2016-09-01

    Since the 1990s, there have been reports of the spread of dermatophytosis caused by Trichophyton tonsurans among contact sports athletes in several countries, including Japan. This study was performed to develop a loop-mediated isothermal amplification (LAMP) system for rapid and accurate detection and identification of T. tonsurans from clinical isolates or hairbrush samples for diagnosis and to prevent the spread of infection. A specific primer set was prepared by comparing the whole genome sequence of T. tonsurans with those of six other closely related dermatophytes. After confirming the sensitivity and specificity of this system, LAMP assay was performed using 37 clinical samples obtained from three healthy volunteers and 24 judo athletes. A total of 155 fungal isolates (56 strains of various standard fungi, 96 identified T. tonsurans isolates, three hairbrush-cultured isolates from judo athletes) and 37 hairbrush samples (34 samples from 24 judo athletes, and three samples from three healthy volunteers) were used for culture and LAMP assay, respectively. The assay showed no cross-reactivity to standard strains other than T. tonsurans. The detection limit was 100 copies of DNA template per tube. All of the 96 T. tonsurans isolates were amplified, and all samples from healthy volunteers showed negative results. Four of the 34 hairbrush samples obtained from judo athletes showed positive results in LAMP assay, and two of the four were positive in both culture and LAMP assay. We developed a rapid LAMP system with high specificity and sensitivity for diagnosis of T. tonsurans infection. PMID:26892741

  3. Optimisation of wide-band parametric amplification stages of a femtosecond laser system with coherent combining of fields

    Science.gov (United States)

    Bagayev, S. N.; Trunov, V. I.; Pestryakov, E. V.; Leshchenko, V. E.; Frolov, S. A.; Vasiliev, V. A.

    2014-05-01

    For the first time the pulses with the energy of ~150 mJ and the spectrum corresponding to the transform-limited duration of ~20 fs amplified in three-stage parametric amplifiers have been coherently combined in a dual-channel femtosecond laser system. The efficiency of coherent combining of above 90% has been obtained at the residual relative time jitter of amplified pulses of 110 as. For the first time the modulation of spectrum was experimentally observed under the parametric amplification of a wideband femtosecond radiation in crystals placed in series. The model of parametric luminescence evolution was developed which allows one to calculate the whole range of the frequency-angular spectrum that, in addition to simulations of the contrast of amplified pulses, gives the possibility of optimising the amplifier efficiency. The results of experiments on measuring the contrast are presented and compared with the calculated data. Methods for enhancing the contrast in the created laser system are analysed. Possible schemes of multibeam pumping of the output cascade are considered for obtaining a petawatt power in the laser system based on cascades of a parametric amplifier in LBO crystals which is being developed at the Institute of Laser Physics of SB RAS.

  4. Detection and identification of Trichophyton tonsurans from clinical isolates and hairbrush samples by loop-mediated isothermal amplification system.

    Science.gov (United States)

    Yo, Ayaka; Yamamoto, Mikachi; Nakayama, Takako; Ishikawa, Jun; Makimura, Koichi

    2016-09-01

    Since the 1990s, there have been reports of the spread of dermatophytosis caused by Trichophyton tonsurans among contact sports athletes in several countries, including Japan. This study was performed to develop a loop-mediated isothermal amplification (LAMP) system for rapid and accurate detection and identification of T. tonsurans from clinical isolates or hairbrush samples for diagnosis and to prevent the spread of infection. A specific primer set was prepared by comparing the whole genome sequence of T. tonsurans with those of six other closely related dermatophytes. After confirming the sensitivity and specificity of this system, LAMP assay was performed using 37 clinical samples obtained from three healthy volunteers and 24 judo athletes. A total of 155 fungal isolates (56 strains of various standard fungi, 96 identified T. tonsurans isolates, three hairbrush-cultured isolates from judo athletes) and 37 hairbrush samples (34 samples from 24 judo athletes, and three samples from three healthy volunteers) were used for culture and LAMP assay, respectively. The assay showed no cross-reactivity to standard strains other than T. tonsurans. The detection limit was 100 copies of DNA template per tube. All of the 96 T. tonsurans isolates were amplified, and all samples from healthy volunteers showed negative results. Four of the 34 hairbrush samples obtained from judo athletes showed positive results in LAMP assay, and two of the four were positive in both culture and LAMP assay. We developed a rapid LAMP system with high specificity and sensitivity for diagnosis of T. tonsurans infection.

  5. A New Power Combining and Outphasing Modulation System for High-Efficiency Power Amplification

    OpenAIRE

    Perreault, David J.

    2010-01-01

    This paper describes a new power combining and outphasing system that provides both high efficiency and linear output control. Whereas conventional outphasing systems utilize two power amplifiers, the system introduced here combines power from four or more amplifiers. The proposed technique overcomes the loss and reactive loading problems of previous outphasing systems. It provides ideally lossless power combining, along with resistive loading of the individual power amplifiers over a very wi...

  6. System Modeling of kJ-class Petawatt Lasers at LLNL

    Energy Technology Data Exchange (ETDEWEB)

    Shverdin, M Y; Rushford, M; Henesian, M A; Boley, C; Haefner, C; Heebner, J E; Crane, J K; Siders, C W; Barty, C P

    2010-04-14

    Advanced Radiographic Capability (ARC) project at the National Ignition Facility (NIF) is designed to produce energetic, ultrafast x-rays in the range of 70-100 keV for backlighting NIF targets. The chirped pulse amplification (CPA) laser system will deliver kilo-Joule pulses at an adjustable pulse duration from 1 ps to 50 ps. System complexity requires sophisticated simulation and modeling tools for design, performance prediction, and comprehension of experimental results. We provide a brief overview of ARC, present our main modeling tools, and describe important performance predictions. The laser system (Fig. 1) consists of an all-fiber front end, including chirped-fiber Bragg grating (CFBG) stretchers. The beam after the final fiber amplifier is split into two apertures and spatially shaped. The split beam first seeds a regenerative amplifier and is then amplified in a multi-pass Nd:glass amplifier. Next, the preamplified chirped pulse is split in time into four identical replicas and injected into one NIF Quad. At the output of the NIF beamline, each of the eight amplified pulses is compressed in an individual, folded, four-grating compressor. Compressor grating pairs have slightly different groove densities to enable compact folding geometry and eliminate adjacent beam cross-talk. Pulse duration is adjustable with a small, rack-mounted compressor in the front-end. We use non-sequential ray-tracing software, FRED for design and layout of the optical system. Currently, our FRED model includes all of the optical components from the output of the fiber front end to the target center (Fig. 2). CAD designed opto-mechanical components are imported into our FRED model to provide a complete system description. In addition to incoherent ray tracing and scattering analysis, FRED uses Gaussian beam decomposition to model coherent beam propagation. Neglecting nonlinear effects, we can obtain a nearly complete frequency domain description of the ARC beam at different stages

  7. Self-compression to 24 MW peak power in a fused silica solid-core fiber using a high-repetition rate thulium-based fiber laser system

    Science.gov (United States)

    Gebhardt, Martin; Gaida, Christian; Stutzki, Fabian; Hädrich, Steffen; Jauregui, Cesar; Limpert, Jens; Tünnermann, Andreas

    2016-03-01

    Complementing ultrafast thulium-doped fiber-laser systems with a subsequent nonlinear pulse compression stage can enable unique laser parameters at around 2 μm operation wavelength. Significant pulse shortening and peak power enhancement have been accomplished using a fused silica solid-core fiber. In this fiber a pulse peak power of 24 MW was achieved without catastrophic damage due to self-focusing. As compared to operation in the well-explored 1 μm wavelength region, increasing the emission wavelength to 2 μm has a twofold advantage for nonlinear compression in fused-silica solid-core fibers. This is because, on the one hand the self-focusing limit scales quadratically with the wavelength. On the other hand the dispersion properties of fused silica allow for self-compression of ultrashort pulses beyond 1.3 μm wavelength, which leads to strong spectral broadening from very compact setups without the need for external compression. Using this technique we have generated 1.1 μJpulses with 24 fs FWHM pulse duration (power and 24.6 W of average power. To the best of our knowledge, this is the highest average power obtained from any nonlinear compression experiment around 2 μm wavelength and the first demonstration of peak powers beyond 20 MW within a fused-silica solid-core fiber. This result emphasizes that thulium-doped fiber-based chirped-pulse amplification systems may outperform their ytterbiumdoped counterparts in terms of peak power due to the fourfold increase of the critical power of self-focusing.

  8. Gene expression profiling of RNA extracted from FFPE tissues: NuGEN technologies' whole-transcriptome amplification system.

    Science.gov (United States)

    Turner, Leah; Heath, Joe Don; Kurn, Nurith

    2011-01-01

    Gene expression profiling of RNA isolated from formalin fixed, paraffin-embedded (FFPE) tissue samples has been historically challenging. Yet FFPE samples are sought-after because of the in-depth retrospective records typically associated with them rendering these samples a valuable resource for translational medicine studies. Extensive degradation, chemical modifications, and cross-linking have made it difficult to isolate RNA of sufficient quality required for large-scale gene expression profiling studies. NuGEN Technologies' WT-Ovation™ FFPE System linearly amplifies RNA from FFPE samples through a robust and simple whole-transcriptome approach using as little as 50 ng total RNA isolated from FFPE samples. The amplified material may be labeled with validated kits and/or protocols from NuGEN for analysis on any of the major gene expression microarray platforms, including: Affymetrix, Agilent, and Illumina gene expression arrays. Results compare well with those obtained using RNA from fresh-frozen samples. RNA quality from FFPE samples varies significantly and neither sample age nor sample size analysis via gel electrophoresis or the Agilent Bioanalyzer system accurately predict materials suitable for amplification. Therefore, NuGEN has validated a correlative qPCR-based analytical method for the RNA derived from FFPE samples which effectively predicts array results. The NuGEN approach enables fast and successful analysis of samples previously thought to be too degraded for gene expression analysis.

  9. Efficient Low Voltage Amplification Using Self Starting Voltage Regulator for Storage System

    Directory of Open Access Journals (Sweden)

    Haslinah Binti Mohd Nasir

    2014-10-01

    Full Text Available This paper presents a storage system design based on energy harvesting to achieve batteryless for Wireless Sensor Network (WSN application. The storage system is part of the Wireless Sensor Energy Harvesting to store and amplify the energy harvested from the surroundings. Finding a new sources of renewable energy has becomes a fashionable among researchers nowadays in particular harvesting the energy from the surrounding. However the challenge raised is to boost up the energy that known are very low. Thus the proposed method must be consumes very little power and suitable for ambient environmental sources such as vibration, wind and RF energy and be able to boost up the energy for storage system. The output of the harvested voltage is insufficient for most applications, therefore the system will boost up the input voltage level using DC to DC converter topology to higher dc voltage.The DC to DC converter shall be designed to suit the types of storage required. The output voltage of this DC converter should be sufficient to charge either capacitor or supercapacitor that will be use in this system as the energy storage system. The supercapacitor will provide power to energize any system such as in this case wireless sensor network[1]. In the case of wireless sensor network for example, the node would require the energy during transmitting and receiving data only whereas during standby mode or sleep mode, the amount of energy required would be very small[2]. Therefore the storage system will make use of this standby time or sleep mode of the sensor node to store as much energy as possible. The presented DC to DC converter in this paper has high efficiency upto 85.4% with input voltage between range 300mV to 600mV.

  10. Specific Targeting of Gene Therapy to Prostate Cancer Using a Two-step Transcriptional Amplification System

    OpenAIRE

    Figueiredo, Marxa L.; Sato, Makoto; Johnson, Mai; Wu, Lily

    2006-01-01

    Significant advances in gene therapy have been made as a result of the improvement of gene delivery systems, discovery of new therapeutic genes, better understanding of mechanisms of disease progression, exploration and improvement of tissue-specific gene regulatory sequences, and development of better prodrug/enzyme systems. We will discuss adenoviral-based and prostate-specific cancer gene therapy, emphasizing tissue-specific promoter choices to increase gene therapy safety and specificity,...

  11. Telomerase repeat amplification protocol (TRAP) activity upon recombinant expression and purification of human telomerase in a bacterial system.

    Science.gov (United States)

    Hansen, Debra T; Thiyagarajan, Thirumagal; Larson, Amy C; Hansen, Jeffrey L

    2016-07-01

    Telomerase biogenesis is a highly regulated process that solves the DNA end-replication problem. Recombinant expression has so far been accomplished only within a eukaryotic background. Towards structural and functional analyses, we developed bacterial expression of human telomerase. Positive activity by the telomerase repeat amplification protocol (TRAP) was identified in cell extracts of Escherichia coli expressing a sequence-optimized hTERT gene, the full-length hTR RNA with a self-splicing hepatitis delta virus ribozyme, and the human heat shock complex of Hsp90, Hsp70, p60/Hop, Hsp40, and p23. The Hsp90 inhibitor geldanamycin did not affect post-assembly TRAP activity. By various purification methods, TRAP activity was also obtained upon expression of only hTERT and hTR. hTERT was confirmed by tandem mass spectrometry in a ∼120 kDa SDS-PAGE fragment from a TRAP-positive purification fraction. TRAP activity was also supported by hTR constructs lacking the box H/ACA small nucleolar RNA domain. End-point TRAP indicated expression levels within 3-fold of that from HeLa carcinoma cells, which is several orders of magnitude below detection by the direct assay. These results represent the first report of TRAP activity from a bacterium and provide a facile system for the investigation of assembly factors and anti-cancer therapeutics independently of a eukaryotic setting. PMID:26965413

  12. Low frequency Raman gain measurements using chirped pulses.

    Science.gov (United States)

    Dogariu, A; Hagan, D

    1997-08-01

    Two-beam coupling, attributed to Raman gain, is observed in dielectrics using chirped femtosecond pulses. A time resolved pump-probe geometry is used to vary the frequency difference between pulses in the terahertz frequency band. Stimulated Raman scattering couples the pulses transferring energy from the higher to the lower frequency beam, resulting in a dispersion shaped curve as a function of the temporal delay, dependent on the product of the pump and probe irradiances. The observed signal gives the Raman gain in SiO2 and PbF2 for detunings up to 10 THz (approximately 300 cm -1 ) using mm-thick samples. This method may also be sensitive to the electronic motion responsible for bound-electronic nonlinear refractive index, which could yield the optical response time of bound electrons. PMID:19373383

  13. Compression of chirp pulses from a femtosecond fiber based amplifier

    Science.gov (United States)

    Ito, Rumi; Takiuchi, Ken-ichi; Tei, Kazuyoku; Yamaguchi, Shigeru; Enokidani, Jyun; Sumida, Shin

    2015-03-01

    We demonstrate a single mode fiber based master oscillator power amplifier (MOPA) with a single polarization and a fully monolithic design. We have built a passive mode-locked polarization maintaining Yb doped fiber as the master oscillator contains a semiconductor saturable absorber mirror and a chirped fiber Bragg grating for the dispersion management. The net intracavity dispersion was managed to be slightly anomalous. The oscillator generates the 150 fs (sech2) pulses at the center wavelength of 1065 nm, and the repetition rate of 42 MHz. The oscillator output was amplified to 1.4 W from 80 mW in the single stage fiber amplifier which results in pulse shape distortion. The pulse shaping with a band pass filter and a compressor was applied to the amplified pulses. The shaping pulses have the pulse width of 90 fs and the pulse energy of 16 nJ.

  14. Dynamics and Control of DNA Sequence Amplification

    CERN Document Server

    Marimuthu, Karthikeyan

    2014-01-01

    DNA amplification is the process of replication of a specified DNA sequence \\emph{in vitro} through time-dependent manipulation of its external environment. A theoretical framework for determination of the optimal dynamic operating conditions of DNA amplification reactions, for any specified amplification objective, is presented based on first-principles biophysical modeling and control theory. Amplification of DNA is formulated as a problem in control theory with optimal solutions that can differ considerably from strategies typically used in practice. Using the Polymerase Chain Reaction (PCR) as an example, sequence-dependent biophysical models for DNA amplification are cast as control systems, wherein the dynamics of the reaction are controlled by a manipulated input variable. Using these control systems, we demonstrate that there exists an optimal temperature cycling strategy for geometric amplification of any DNA sequence and formulate optimal control problems that can be used to derive the optimal tempe...

  15. Coherent white light amplification

    Science.gov (United States)

    Jovanovic, Igor; Barty, Christopher P.

    2004-05-25

    A system for coherent simultaneous amplification of a broad spectral range of light that includes an optical parametric amplifier and a source of a seed pulse is described. A first angular dispersive element is operatively connected to the source of a seed pulse. A first imaging telescope is operatively connected to the first angular dispersive element and operatively connected to the optical parametric amplifier. A source of a pump pulse is operatively connected to the optical parametric amplifier. A second imaging telescope is operatively connected to the optical parametric amplifier and a second angular dispersive element is operatively connected to the second imaging telescope.

  16. Exawatt-Zettawatt Pulse Generation and Applications

    CERN Document Server

    Mourou, G A; Malkin, V M; Toroker, Z; Khazanov, E A; Sergeev, A M; Tajima, T

    2011-01-01

    A new amplification method, weaving the three basic compression techniques, Chirped Pulse Amplification (CPA), Optical Parametric Chirped Pulse Amplification (OPCPA) and Plasma Compression by Backward Raman Amplification (BRA) in plasma, is proposed. It is called C3 for Cascaded Conversion Compression. It has the capability to compress with good efficiency kilojoule to megajoule, nanosecond laser pulses into femtosecond pulses, to produce exawatt and beyond peak power. In the future, C3 could be used at large-scale facilities such as the National Ignition Facility (NIF) or the Laser Megajoule (LMJ) and open the way to zettawatt level pulses. The beam will be focused to a wavelength spot size with a f#1. The very small beam size, i.e. few centimeters, along with the low laser repetition rate laser system will make possible the use of inexpensive, precision, disposable optics. The resulting intensity will approach the Schwinger value, thus opening up new possibilities in fundamental physics.

  17. Centrifugal LabTube platform for fully automated DNA purification and LAMP amplification based on an integrated, low-cost heating system.

    Science.gov (United States)

    Hoehl, Melanie M; Weißert, Michael; Dannenberg, Arne; Nesch, Thomas; Paust, Nils; von Stetten, Felix; Zengerle, Roland; Slocum, Alexander H; Steigert, Juergen

    2014-06-01

    This paper introduces a disposable battery-driven heating system for loop-mediated isothermal DNA amplification (LAMP) inside a centrifugally-driven DNA purification platform (LabTube). We demonstrate LabTube-based fully automated DNA purification of as low as 100 cell-equivalents of verotoxin-producing Escherichia coli (VTEC) in water, milk and apple juice in a laboratory centrifuge, followed by integrated and automated LAMP amplification with a reduction of hands-on time from 45 to 1 min. The heating system consists of two parallel SMD thick film resistors and a NTC as heating and temperature sensing elements. They are driven by a 3 V battery and controlled by a microcontroller. The LAMP reagents are stored in the elution chamber and the amplification starts immediately after the eluate is purged into the chamber. The LabTube, including a microcontroller-based heating system, demonstrates contamination-free and automated sample-to-answer nucleic acid testing within a laboratory centrifuge. The heating system can be easily parallelized within one LabTube and it is deployable for a variety of heating and electrical applications.

  18. Laser Challenges for Fast Ignition

    Energy Technology Data Exchange (ETDEWEB)

    Zuegel, J.D.; Borneis, S.; Barty, C.; LeGarrec, B.; Danson, C.; Miyanga, N.; Rambo, P.K.; LeBlanc, C.; Kessler, T.J.; Schmid, A.W.; Waxer, L.J.; Kelly, J.H.; Kruschwitz, B.; Jungquist, R.; Moses, E.; Britten, J.; Jovanovic, I.; Dawson, J.; Blanchot, N.

    2006-04-12

    The laser challenges and state of the art in high-energy, solid-state petawatt lasers for fast ignition (FI) research are reviewed. A number of new laser systems are currently under construction or being planned that will facilitate proof-of-principle FI experiments. Recent technological advances in each of the major ultrafast laser subsystems are reported, including chirped-pulse generation and broadband amplification in the front end, high-energy amplification, and pulse compression with adaptive wavefront correction.

  19. Dynamics and control of DNA sequence amplification

    International Nuclear Information System (INIS)

    DNA amplification is the process of replication of a specified DNA sequence in vitro through time-dependent manipulation of its external environment. A theoretical framework for determination of the optimal dynamic operating conditions of DNA amplification reactions, for any specified amplification objective, is presented based on first-principles biophysical modeling and control theory. Amplification of DNA is formulated as a problem in control theory with optimal solutions that can differ considerably from strategies typically used in practice. Using the Polymerase Chain Reaction as an example, sequence-dependent biophysical models for DNA amplification are cast as control systems, wherein the dynamics of the reaction are controlled by a manipulated input variable. Using these control systems, we demonstrate that there exists an optimal temperature cycling strategy for geometric amplification of any DNA sequence and formulate optimal control problems that can be used to derive the optimal temperature profile. Strategies for the optimal synthesis of the DNA amplification control trajectory are proposed. Analogous methods can be used to formulate control problems for more advanced amplification objectives corresponding to the design of new types of DNA amplification reactions

  20. Dynamics and control of DNA sequence amplification

    Energy Technology Data Exchange (ETDEWEB)

    Marimuthu, Karthikeyan [Department of Chemical Engineering and Center for Advanced Process Decision-Making, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213 (United States); Chakrabarti, Raj, E-mail: raj@pmc-group.com, E-mail: rajc@andrew.cmu.edu [Department of Chemical Engineering and Center for Advanced Process Decision-Making, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213 (United States); Division of Fundamental Research, PMC Advanced Technology, Mount Laurel, New Jersey 08054 (United States)

    2014-10-28

    DNA amplification is the process of replication of a specified DNA sequence in vitro through time-dependent manipulation of its external environment. A theoretical framework for determination of the optimal dynamic operating conditions of DNA amplification reactions, for any specified amplification objective, is presented based on first-principles biophysical modeling and control theory. Amplification of DNA is formulated as a problem in control theory with optimal solutions that can differ considerably from strategies typically used in practice. Using the Polymerase Chain Reaction as an example, sequence-dependent biophysical models for DNA amplification are cast as control systems, wherein the dynamics of the reaction are controlled by a manipulated input variable. Using these control systems, we demonstrate that there exists an optimal temperature cycling strategy for geometric amplification of any DNA sequence and formulate optimal control problems that can be used to derive the optimal temperature profile. Strategies for the optimal synthesis of the DNA amplification control trajectory are proposed. Analogous methods can be used to formulate control problems for more advanced amplification objectives corresponding to the design of new types of DNA amplification reactions.

  1. A Novel Femtosecond Laser System for Attosecond Pulse Generation

    Directory of Open Access Journals (Sweden)

    Jianqiang Zhu

    2012-01-01

    Full Text Available We report a novel ultrabroadband high-energy femtosecond laser to be built in our laboratory. A 7-femtosecond pulse is firstly stretched by an eight-pass offner stretcher with a chirp rate 15 ps/nm, and then energy-amplified by a two-stage optical parametric chirped pulse amplification (OPCPA. The first stage as preamplification with three pieces of BBO crystals provides the majority of the energy gain. At the second stage, a YCOB crystal with the aperture of ~50 mm is used instead of the KDP crystal as the gain medium to ensure the shortest pulse. After the completion, the laser will deliver about 8 J with pulse duration of about 10 femtoseconds, which should be beneficial to the attosecond pulse generation and other ultrafast experiments.

  2. An empirical approach for quantifying loop-mediated isothermal amplification (LAMP using Escherichia coli as a model system.

    Directory of Open Access Journals (Sweden)

    Sowmya Subramanian

    Full Text Available Loop mediated isothermal amplification (LAMP is a highly efficient, selective and rapid DNA amplification technique for genetic screening of pathogens. However, despite its popularity, there is yet no mathematical model to quantify the outcome and no well-defined metric for comparing results that are available. LAMP is intrinsically complex and involves multiple pathways for gene replication, making fundamental modelling nearly intractable. To circumvent this difficulty, an alternate, empirical model is introduced that will allow one to extract a set of parameters from the concentration versus time curves. A simple recipe to deduce the time to positive, Tp--a parameter analogous to the threshold cycling time in polymerase chain reaction (PCR, is also provided. These parameters can be regarded as objective and unambiguous indicators of LAMP amplification. The model is exemplified on Escherichia coli strains by using the two gene fragments responsible for vero-toxin (VT production and tested against VT-producing (O157 and O45 and non-VT producing (DH5 alpha strains. Selective amplification of appropriate target sequences was made using well established LAMP primers and protocols, and the concentrations of the amplicons were measured using a Qubit 2.0 fluorometer at specific intervals of time. The data is fitted to a generalized logistic function. Apart from providing precise screening indicators, representing the data with a small set of numbers offers significant advantages. It facilitates comparisons of LAMP reactions independently of the sampling technique. It also eliminates subjectivity in interpretation, simplifies data analysis, and allows easy data archival, retrieval and statistical analysis for large sample populations. To our knowledge this work represents a first attempt to quantitatively model LAMP and offer a standard method that could pave the way towards high throughput automated screening.

  3. Design and performance characteristics of an electromagnetic interference shielded enclosure for high voltage Pockels cell switching system

    Indian Academy of Sciences (India)

    A K Sharma; K K Mishra; M Raghuramaiah; P A Naik; P D Gupta

    2007-06-01

    An electro-magnetic interference noise shielding enclosure for Pockels cells for high speed synchronized switching has been set-up and tested. The shielding effectiveness of the aluminum enclosures housing the Pockels cells and the electronic circuitry has been measured using a high impedance probe and is found to be $\\sim 50 dB$. This ensures a noise-free and synchronized electro-optic switching in an Nd:glass re-generative amplifier of chirped pulse amplification based table top terawatt laser system.

  4. Evaluation and comparative analysis of direct amplification of STRs using PowerPlex® 18D and Identifiler® Direct systems.

    Science.gov (United States)

    Myers, Blake A; King, Jonathan L; Budowle, Bruce

    2012-09-01

    Short tandem repeat (STR) analysis remains the primary forensic tool for DNA identification. Because of the success of forensic DNA typing and the use of database searches to develop investigative leads, there is an increased demand for populating forensic DNA databases. Reference samples tend to be of high quantity and quality and are somewhat standardized in format. Being more predictable in quality than unknown forensic casework samples, reference samples lend themselves to alternate methods of analysis such as direct amplification. Two commercially available direct amplification kits for processing reference samples were evaluated. The kits are PowerPlex(®) 18D (Promega Corp., Madison, Wisconsin) and Identifiler(®) Direct (Life Technologies, Carlsbad, CA). Both kits offer the core CODIS loci plus amelogenin, and the loci D2S1338, D19S433. The PP18D kit offers two additional loci, Penta E and Penta D. To determine the robustness and reliability of the PP18D and ID Direct amplification systems, buccal cell samples (deposited on FTA paper using the EasiCollect™ device (Florham Park, NJ)) from 400 anonymous donors were analyzed under conditions to achieve a high rate of successful typing. First-pass success rates were 96.25%, 96.25%, and 95% for PP18D with a 5s injection, ID Direct with a 10s injection, and ID Direct with a 5s injection, respectively. Profiles that could not be typed were not a result of the kits' performance but were a result of the inherent variation in the amount of DNA obtained with the collection device and buccal cells. Low signal profiles can be re-analyzed by either re-injecting for a longer time or by re-amplification with an additional PCR cycle. Overloaded profiles can be re-analyzed by re-injecting for a shorter time or by re-amplification with one less cycle. All called typing results, when interpretable, were consistent under the prescribed conditions, different injection times, and 26-28 PCR cycles for both chemistries. Peak

  5. The Seneca Amplification Construction

    Directory of Open Access Journals (Sweden)

    Wallace Chafe

    2012-01-01

    Full Text Available The polysynthetic morphology of the Northern Iroquoian languages presents a challenge to studies of clause combining. The discussion here focuses on a Seneca construction that may appear within a single clause but may also straddle clause boundaries. It amplifies the information provided by a referent, here called the trigger, that is introduced by the pronominal prefix within a verb or occasionally in some other way. The particle neh signals that further information about that referent will follow. This construction is found at four levels of syntactic complexity. At the first level the trigger and its amplification occur within the same prosodic phrase and the amplification is a noun. At the second level the amplification occurs in a separate prosodic phrase but remains a noun. At the third level the amplification exhibits verb morphology but has been lexicalized with a nominal function. At the fourth level the amplification functions as a full clause and neh serves as a marker of clause combining. Several varieties of amplification are discussed, as are cases in which the speaker judges that no amplification is needed. It is suggested that the typologically similar Caddo language illustrates a situation in which this construction could never arise, simply because Caddo verbs lack the pronominal element that triggers the construction in Seneca.

  6. Nonlinear temporal pulse cleaning techniques and application

    Institute of Scientific and Technical Information of China (English)

    Yi; Xu; Jianzhou; Wang; Yansui; Huang; Yanyan; Li; Xiaomin; Lu; Yuxin; Leng

    2013-01-01

    Two different pulse cleaning techniques for ultra-high contrast laser systems are comparably analysed in this work.The first pulse cleaning technique is based on noncollinear femtosecond optical-parametric amplification(NOPA)and second-harmonic generation(SHG)processes.The other is based on cross-polarized wave(XPW)generation.With a double chirped pulse amplifier(double-CPA)scheme,although temporal contrast enhancement in a high-intensity femtosecond Ti:sapphire chirped pulse amplification(CPA)laser system can be achieved based on both of the techniques,the two different pulse cleaning techniques still have their own advantages and are suitable for different contrast enhancement requirements of different laser systems.

  7. Selective excitation in a three-state system using a hybrid adiabatic-nonadiabatic interaction

    Science.gov (United States)

    Song, Yunheung; Lee, Han-gyeol; Jo, Hanlae; Ahn, Jaewook

    2016-08-01

    The chirped-pulse interaction in the adiabatic coupling regime induces cyclic permutations of the energy states of a three-level system in the V -type configuration, which process is known as the three-level chirped rapid adiabatic passage (RAP). Here we show that a spectral hole in a chirped pulse can turn on or off the level mixing at adiabatic crossing points of this process, reducing the system to an effective two-level system. The given hybrid adiabatic-nonadiabatic transition enables selective excitation of the three-level system, controlled by the laser intensity and spectral position of the hole, as well as the sign of the chirp parameter. Experiments performed with shaped femtosecond laser pulses and the three lowest energy levels (5 S1 /2 , 5 P1 /2 , and 5 P3 /2 ) of atomic rubidium (Rb) show good agreement with the theoretically analyzed dynamics. The result indicates that our method, when being combined with the ordinary chirped RAP, implements an adiabatic transition between the Raman-coupled excited states. Furthermore, our laser intensity-dependent control may have applications including selective excitations of atoms or ions arranged in space when being used in conjunction with laser beam profile programming.

  8. Selective excitation in a three-state system using a hybrid adiabatic-nonadiabatic interaction

    CERN Document Server

    Song, Yunheung; Jo, Hanlae; Ahn, Jaewook

    2016-01-01

    The chirped-pulse interaction in the adiabatic coupling regime induces cyclic permutations of the energy states of a three-level system in the $V$-type configuration, which process is known as the three-level chirped rapid adiabatic passage. Here we show that a spectral hole in a chirped pulse can turn on and off one of the two adiabatic crossing points of this process, reducing the system to an effective two-level system. The given hybrid adiabatic-nonadiabatic transition results in selective excitation of the three-level system, controlled by the laser intensity and spectral position of the hole as well as the sign of the chirp parameter. Experiments are performed with shaped femtosecond laser pulses and the three lowest energy-levels (5S$_{1/2}$, 5P$_{1/2}$, and 5P$_{3/2}$) of atomic rubidium ($^{85}$Rb), of which the result shows good agreement with the theoretically analyzed dynamics. The result indicates that our method, being combined with the ordinary chirped-RAP, implements an adiabatic transitions b...

  9. A CCD-based fluorescence imaging system for real-time loop-mediated isothermal amplification-based rapid and sensitive detection of waterborne pathogens on microchips.

    Science.gov (United States)

    Ahmad, Farhan; Seyrig, Gregoire; Tourlousse, Dieter M; Stedtfeld, Robert D; Tiedje, James M; Hashsham, Syed A

    2011-10-01

    Rapid, sensitive, and low-cost pathogen diagnostic systems are needed for early disease diagnosis and treatment, especially in resource-limited settings. This study reports a low-cost charge-coupled device (CCD)-based fluorescence imaging system for rapid detection of waterborne pathogens by isothermal gene amplification in disposable microchips. Fluorescence imaging capability of this monochromatic CCD camera is evaluated by optimizing the gain, offset, and exposure time. This imaging system is validated for 12 virulence genes of major waterborne pathogens on cyclic olefin polymer (COP) microchips, using SYTO-82 dye and real time fluorescence loop-mediated isothermal amplification referred here as microRT(f)-LAMP. Signal-to-noise ratio (SNR) and threshold time (Tt) of microRT(f)-LAMP assays are compared with those from a commercial real-time polymerase chain reaction (PCR) instrument. Applying a CCD exposure of 5 s to 10(5) starting DNA copies of microRT(f)-LAMP assays increases the SNR by 8-fold and reduces the Tt by 9.8 min in comparison to a commercial real-time PCR instrument. Additionally, single copy level sensitivity for Campylobacter jejuni 0414 gene is obtained for microRT(f)-LAMP with a Tt of 19 min, which is half the time of the commercial real-time PCR instrument. Due to the control over the exposure time and the wide field imaging capability of CCD, this low-cost fluorescence imaging system has the potential for rapid and parallel detection of pathogenic microorganisms in high throughput microfluidic chips.

  10. Early amplification options.

    Science.gov (United States)

    Gabbard, Sandra Abbott; Schryer, Jennifer

    2003-01-01

    Children with permanent hearing loss have been remediated with hearing amplification devices for decades. The influx of young infants identified with hearing loss through successful newborn hearing screening programs has established a need for amplification resources for infants within the first six months of life. For the approximately two of every 1000 infants born who are identified with bilateral hearing loss [Mehl and Thomson, 1998, Pediatrics 101, p. e4], the use of amplification is commonly the first step in treating the sequella of their loss. The use of hearing aids, combined with early intervention, has been shown to significantly improve the speech and language skills of young children with hearing loss [Yoshinaga-Itano, 2000, Seminars in Hearing 21, p. 309]. Speech and language delays have contributed to compromised academic performance of school aged children with hearing loss [Johnson et al., 1997, Educational Audiology Handbook, Singular Publishing, San Diego]. Most hard-of-hearing and deaf children use hearing aids and other assistive listening devices every day throughout their lifetime and the life expectancy of a hearing aid is only five to eight years. The current challenge for pediatric audiologists is selecting and evaluating the available amplification to provide the best options for children and their families. Amplification technology has seen an explosion in growth the past few years and the options continue to expand rapidly. This article examines currently available amplification technology and reviews the selection criteria that may be used for infants and young children. Issues such as style, type, amplification features, signal processing strategies, and verification and validation tools are also discussed. PMID:14648816

  11. 山苍子AFLP反应体系的建立及其引物筛选%Primer Screening and AFLP Amplification Reaction System of Litsea cubeba

    Institute of Scientific and Technical Information of China (English)

    田胜平; 汪阳东; 陈益存; 占志勇; 斯林林

    2012-01-01

    The effect of DNA extraction was analyzed by comparing the young leaf, terminal bud and flower of Litsea cubeba. The time of DNA digestion and several key factors affecting the PCR selective amplification such as Mg2 + concentration, dNTPs concentration and the mount of the selective amplification primer were also trialed. An optimized AFLP reaction system of Litsea cubeba was established. The results showed that the high quality genomic DNA as a PCR template could be isolated from the bud tissue; genomic DNA could be digested in a hour by 5 U EcoR I and 5 U Mse I; The optical selection amplification system was 20 (jlL reaction mix containing 1.0 U rTaq polymer-ase, 2.0 μL 10 xPCR buffer, 1.8 μL25 mmol ·L-1MgCl2, 1.4 μL2.5 mmol · LT-1dNTP, 100 ng · μ-1 primer each 1.0 μL. Clear and stable amplification band patterns can be obtained and 10 pairs of AFLP primers with good genetic diversity were selected according to the optimized reaction system. The results will be an effective protocol for further studying the genetic structure and differentiation of Litsea cubeba population.%通过对山苍子幼嫩叶片、顶芽、花蕾3种组织的DNA提取效果分析和对影响酶切及选择性扩增效果的4个主要因素(酶切时间、Mg2+浓度、dNTPs浓度、引物浓度)的比较研究,建立了适合于山苍子AFLP分析的技术体系.结果表明,山苍子的顶芽是较好的DNA提取材料;山苍子基因组DNA经5 UEcoRI和5 UMseI酶切lh即可完全酶切;最佳的选择性扩增体系为20 μL反应体系中含有1.0U rTaq聚合酶、2.0 μL 10×PCR缓冲液、1.8 μL 25mmol·L-1MgCl2、1.4 μL 2.5 mmol·L-1dNTP、100 ng·μL-1引物各1.0 μL.使用该反应体系获得了清晰、稳定的DNA指纹图谱,并筛选出10对多态性较好的AFLP引物组合,为利用AFLP标记技术进一步开展山苍子种群遗传结构、遗传分化等研究奠定了基础.

  12. Quantum Feedback Amplification

    Science.gov (United States)

    Yamamoto, Naoki

    2016-04-01

    Quantum amplification is essential for various quantum technologies such as communication and weak-signal detection. However, its practical use is still limited due to inevitable device fragility that brings about distortion in the output signal or state. This paper presents a general theory that solves this critical issue. The key idea is simple and easy to implement: just a passive feedback of the amplifier's auxiliary mode, which is usually thrown away. In fact, this scheme makes the controlled amplifier significantly robust, and furthermore it realizes the minimum-noise amplification even under realistic imperfections. Hence, the presented theory enables the quantum amplification to be implemented at a practical level. Also, a nondegenerate parametric amplifier subjected to a special detuning is proposed to show that, additionally, it has a broadband nature.

  13. Onshore seismic amplifications due to bathymetric features

    Science.gov (United States)

    Rodríguez-Castellanos, A.; Carbajal-Romero, M.; Flores-Guzmán, N.; Olivera-Villaseñor, E.; Kryvko, A.

    2016-08-01

    We perform numerical calculations for onshore seismic amplifications, taking into consideration the effect of bathymetric features on the propagation of seismic movements. To this end, the boundary element method is applied. Boundary elements are employed to irradiate waves and, consequently, force densities can be obtained for each boundary element. From this assumption, Huygens’ principle is applied, and since the diffracted waves are built at the boundary from which they are radiated, this idea is equivalent to Somigliana’s representation theorem. The application of boundary conditions leads to a linear system being obtained (Fredholm integral equations). Several numerical models are analyzed, with the first one being used to verify the proposed formulation, and the others being used to estimate onshore seismic amplifications due to the presence of bathymetric features. The results obtained show that compressional waves (P-waves) generate onshore seismic amplifications that can vary from 1.2 to 5.2 times the amplitude of the incident wave. On the other hand, the shear waves (S-waves) can cause seismic amplifications of up to 4.0 times the incident wave. Furthermore, an important result is that in most cases the highest seismic amplifications from an offshore earthquake are located on the shoreline and not offshore, despite the seafloor configuration. Moreover, the influence of the incident angle of seismic waves on the seismic amplifications is highlighted.

  14. Enhanced DNA Profiling of the Semen Donor in Late Reported Sexual Assaults: Use of Y-Chromosome-Targeted Pre-amplification and Next Generation Y-STR Amplification Systems.

    Science.gov (United States)

    Hanson, Erin K; Ballantyne, Jack

    2016-01-01

    In some cases of sexual assault the victim may not report the assault for several days after the incident due to various factors. The ability to obtain an autosomal STR profile of the semen donor from a living victim rapidly diminishes as the post-coital interval is extended due to the presence of only a small amount of male DNA amidst an overwhelming amount of female DNA. Previously, we have utilized various technological tools to overcome the limitations of male DNA profiling in extended interval post-coital samples including the use of Y-chromosome STR profiling, cervical sample, and post-PCR purification permitting the recovery of Y-STR profiles of the male DNA from samples collected 5-6 days after intercourse. Despite this success, the reproductive biology literature reports the presence of spermatozoa in the human cervix up to 7-10 days post-coitus. Therefore, novel and improved methods for recovery of male profiles in extended interval post-coital samples were required. Here, we describe enhanced strategies, including Y-chromosome-targeted pre-amplification and next generation Y-STR amplification kits, that have resulted in the ability to obtain probative male profiles from samples collected 6-9 days after intercourse.

  15. Flux amplification in SSPX

    Science.gov (United States)

    Lodestro, Lynda; Hooper, E. B.; Jayakumar, R. J.; Pearlstein, L. D.; Wood, R. D.; McLean, H. S.

    2007-11-01

    Flux amplification---the ratio of poloidal flux enclosed between the magnetic and geometric axes to that between the separatrix and the geometric axis---is a key measure of efficiency for edge-current-driven spheromaks. With the new, modular capacitor bank, permitting flexible programming of the gun current, studies of flux amplification under various drive scenarios can be performed. Analysis of recent results of pulsed operation with the new bank finds an efficiency ˜ 0.2, in selected shots, of the conversion of gun energy to confined magnetic energy during the pulses, and suggests a route toward sustained efficiency at 0.2. Results of experiments, a model calculation of field build-up, and NIMROD simulations exploring this newly suggested scenario will be presented.

  16. High-power, 1-ps, all-Yb:YAG thin-disk regenerative amplifier.

    Science.gov (United States)

    Fattahi, Hanieh; Alismail, Ayman; Wang, Haochuan; Brons, Jonathan; Pronin, Oleg; Buberl, Theresa; Vámos, Lénárd; Arisholm, Gunnar; Azzeer, Abdallah M; Krausz, Ferenc

    2016-03-15

    We report a 100 W, 20 mJ, 1-ps, all-Yb:YAG thin-disk regenerative amplifier seeded by a microjoule-level Yb:YAG thin-disk Kerr-lens mode-locked oscillator. The regenerative amplifier is implemented in a chirped pulse amplification system and operates at an ambient temperature in air, delivering ultrastable output pulses at a 5 kHz repetition rate and with a root mean square power noise value of less than 0.5%. Second harmonic generation of the amplifier's output in a 1.5 mm-thick BBO crystal results in more than 70 W at 515 nm, making the system an attractive source for pumping optical parametric chirped pulse amplifiers in the visible and near-infrared spectral ranges.

  17. High-power, 1-ps, all-Yb:YAG thin-disk regenerative amplifier.

    Science.gov (United States)

    Fattahi, Hanieh; Alismail, Ayman; Wang, Haochuan; Brons, Jonathan; Pronin, Oleg; Buberl, Theresa; Vámos, Lénárd; Arisholm, Gunnar; Azzeer, Abdallah M; Krausz, Ferenc

    2016-03-15

    We report a 100 W, 20 mJ, 1-ps, all-Yb:YAG thin-disk regenerative amplifier seeded by a microjoule-level Yb:YAG thin-disk Kerr-lens mode-locked oscillator. The regenerative amplifier is implemented in a chirped pulse amplification system and operates at an ambient temperature in air, delivering ultrastable output pulses at a 5 kHz repetition rate and with a root mean square power noise value of less than 0.5%. Second harmonic generation of the amplifier's output in a 1.5 mm-thick BBO crystal results in more than 70 W at 515 nm, making the system an attractive source for pumping optical parametric chirped pulse amplifiers in the visible and near-infrared spectral ranges. PMID:26977650

  18. Bacteriophage P1 cloning system for the isolation, amplification, and recovery of DNA fragments as large as 100 kilobase pairs.

    OpenAIRE

    Sternberg, N

    1990-01-01

    The development of a bacteriophage P1 cloning system capable of accepting DNA fragments as large as 100 kilobase pairs (kbp) is described. The vectors used in this system contain a P1 packaging site (pac) to package vector and cloned DNA into phage particles, two P1 loxP recombination sites to cyclize the packaged DNA once it has been injected into a strain of Escherichia coli containing the P1 Cre recombinase, a kanr gene to select bacterial clones containing the cyclized DNA, a P1 plasmid r...

  19. Robert Feulgen Prize Lecture 1999. Detection and amplification systems for sensitive, multiple-target DNA and RNA in situ hybridization: looking inside cells with a spectrum of colors.

    Science.gov (United States)

    Speel, E J

    1999-08-01

    In situ hybridization (ISH) is a powerful technique for localizing specific nucleic acid sequences (DNA, RNA) in microscopic preparations of tissues, cells, chromosomes, and linear DNA fibers. To date, a wide variety of research and diagnostic applications of ISH have been described, making the technique an integral part of studies concerning gene mapping, gene expression, RNA processing and transport, the three-dimensional organization of the nucleus, tumor genetics, microbial infections, and prenatal diagnosis. In this review, I first describe the ISH procedure in short and then focus on the currently available non-radioactive probe-labeling and cytochemical detection methodologies that are utilized to visualize one or multiple different nucleic acid targets in situ with different colors. Special emphasis is placed on the procedures applying fluorescence and brightfield microscopy, the simultaneous detection of nucleic acids and proteins by combined ISH and immunocytochemistry, and, in addition, on the recent progress that has been made with the introduction of signal amplification procedures to increase the detection sensitivity of ISH. Finally, a comparison of fluorescence, enzyme cytochemical, and colloidal gold silver probe detection systems will be presented, and possible future directions of in situ nucleic acid detection will be discussed. PMID:10460463

  20. Robert Feulgen Prize Lecture 1999. Detection and amplification systems for sensitive, multiple-target DNA and RNA in situ hybridization: looking inside cells with a spectrum of colors.

    Science.gov (United States)

    Speel, E J

    1999-08-01

    In situ hybridization (ISH) is a powerful technique for localizing specific nucleic acid sequences (DNA, RNA) in microscopic preparations of tissues, cells, chromosomes, and linear DNA fibers. To date, a wide variety of research and diagnostic applications of ISH have been described, making the technique an integral part of studies concerning gene mapping, gene expression, RNA processing and transport, the three-dimensional organization of the nucleus, tumor genetics, microbial infections, and prenatal diagnosis. In this review, I first describe the ISH procedure in short and then focus on the currently available non-radioactive probe-labeling and cytochemical detection methodologies that are utilized to visualize one or multiple different nucleic acid targets in situ with different colors. Special emphasis is placed on the procedures applying fluorescence and brightfield microscopy, the simultaneous detection of nucleic acids and proteins by combined ISH and immunocytochemistry, and, in addition, on the recent progress that has been made with the introduction of signal amplification procedures to increase the detection sensitivity of ISH. Finally, a comparison of fluorescence, enzyme cytochemical, and colloidal gold silver probe detection systems will be presented, and possible future directions of in situ nucleic acid detection will be discussed.

  1. Alfalfa dwarf cytorhabdovirus P protein is a local and systemic RNA silencing supressor which inhibits programmed RISC activity and prevents transitive amplification of RNA silencing.

    Science.gov (United States)

    Bejerman, Nicolás; Mann, Krin S; Dietzgen, Ralf G

    2016-09-15

    Plants employ RNA silencing as an innate defense mechanism against viruses. As a counter-defense, plant viruses have evolved to express RNA silencing suppressor proteins (RSS), which target one or more steps of the silencing pathway. In this study, we show that the phosphoprotein (P) encoded by the negative-sense RNA virus alfalfa dwarf virus (ADV), a species of the genus Cytorhabdovirus, family Rhabdoviridae, is a suppressor of RNA silencing. ADV P has a relatively weak local RSS activity, and does not prevent siRNA accumulation. On the other hand, ADV P strongly suppresses systemic RNA silencing, but does not interfere with the short-distance spread of silencing, which is consistent with its lack of inhibition of siRNA accumulation. The mechanism of suppression appears to involve ADV P binding to RNA-induced silencing complex proteins AGO1 and AGO4 as shown in protein-protein interaction assays when ectopically expressed. In planta, we demonstrate that ADV P likely functions by inhibiting miRNA-guided AGO1 cleavage and prevents transitive amplification by repressing the production of secondary siRNAs. As recently described for lettuce necrotic yellows cytorhabdovirus P, but in contrast to other viral RSS known to disrupt AGO activity, ADV P sequence does not contain any recognizable GW/WG or F-box motifs, which suggests that cytorhabdovirus P proteins may use alternative motifs to bind to AGO proteins. PMID:27543392

  2. Amplification refractory mutation system polymerase chain reaction versus optimized polymerase chain reaction restriction-fragment length polymorphism for apolipoprotein E genotyping of majorly depressed patients.

    Science.gov (United States)

    You, Hongmin; Chen, Jin; Zhou, Jingjing; Huang, Hua; Pan, Junxi; Wang, Ziye; Lv, Lin; Zhang, Lujun; Li, Juan; Qin, Bin; Yang, Yongtao; Xie, Peng

    2015-11-01

    Major depressive disorder (MDD) is a prevalent, debilitating mood disorder that has been associated with several genetic polymorphisms. One such polymorphism, namely that of apolipoprotein E (APOE), has three allelic forms (ε2, ε3 and ε4) that encode for six unique isoforms of the APOE protein. A growing number of techniques have been developed for APOE genotyping; however, not all polymerase chain reaction (PCR)‑based genotyping techniques are equally accurate or cost‑effective. In order to find a more accurate and cost‑effective APOE genotyping method for MDD screening in large populations, the present study comparatively evaluated two genotyping methods, amplification refractory mutation system PCR (ARMS‑PCR) and optimized PCR restriction‑fragment length polymorphism (PCR‑RFLP), in blood samples taken from a population of 708 MDD patients. Although either of the two methods were able to detect all six unique APOE genotypes, comparisons of the two methods with Sanger sequencing demonstrated that ARMS‑PCR (94%) was significantly more accurate than optimized PCR‑RFLP (82%). ARMS‑PCR should prove useful in quickly verifying ambiguous results obtained by other APOE genotyping methods and can be cost-effectively performed in the setting of a small laboratory or a population-based screening program.

  3. Development of a new amplification-refractory mutation system for detection of a single nucleotide polymorphism linked to drug resistance in Ancylostoma caninum.

    Science.gov (United States)

    Furtado, L F; Rabelo, É M

    2015-01-01

    Single nucleotide polymorphisms at codons 167, 198, and 200 in the β-tubulin isotype 1 gene have been associated with benz-imidazole resistance. Until now, the only mutation observed in Ancy-lostoma caninum was at codon 200 of this gene. However, the standard-ized methodologies used to detect mutations in this species are faulty. The objective of this study was to standardize a molecular technique based on amplification-refractory mutation system-polymerase chain reaction (ARMS-PCR) for detecting the mutation at codon 200 in the A. caninum β-tubulin isotype 1 gene. Controls were synthesized both for the absence of the mutation, using conventional PCR, and for the presence of the mutation, using the Megaprimer-PCR technique. After standardization of the ARMS-PCR using the controls, the technique was validated through an analysis of 75 A. caninum DNA samples, fol-lowed by sequencing. The results revealed that the developed technique has high sensitivity, specificity, and reproducibility, which allow its ap-plication in the field. PMID:26125702

  4. Laser pulse spectral shaping based on electro-optic modulation

    Institute of Scientific and Technical Information of China (English)

    Yanhai Wang; Jiangfeng Wang; You'en Jiang; Yan Bao; Xuechun Li; Zunqi Lin

    2008-01-01

    A new spectrum shaping method, based on electro-optic modulation, to alleviate gain narrowing in chirped pulse amplification (CPA) system, is described and numerically simulated. Near-Fourier transform-limited seed laser pulse is chirped linearly through optical stretcher. Then the chirped laser pulse is coupled into integrated waveguide electro-optic modulator driven by an aperture-coupled-stripline (ACSL) electricalwaveform generator, and the pulse shape and amplitude are shaped in time domain. Because of the directrelationship between frequency interval and time interval of the linearly chirped pulse, the laser pulse spectrum is shaped correspondingly. Spectrum-shaping examples are modeled numerically to determine the spectral resolution of this technique. The phase error introduced in this method is also discussed.

  5. Cost analysis of nucleic acid amplification for diagnosing pulmonary tuberculosis, within the context of the Brazilian Unified Health Care System

    OpenAIRE

    Márcia Pinto; Aline Piovezan Entringer; Ricardo Steffen; Anete Trajman

    2015-01-01

    ABSTRACT We estimated the costs of a molecular test for Mycobacterium tuberculosis and resistance to rifampin (Xpert MTB/RIF) and of smear microscopy, within the Brazilian Sistema Único de Saúde (SUS, Unified Health Care System). In SUS laboratories in the cities of Rio de Janeiro and Manaus, we performed activity-based costing and micro-costing. The mean unit costs for Xpert MTB/RIF and smear microscopy were R$35.57 and R$14.16, respectively. The major cost drivers for Xpert MTB/RIF and smea...

  6. Picosecond DPSS laser technology for OPCPA pumping

    Science.gov (United States)

    Vaupel, Andreas; Bodnar, Nathan; Webb, Benjamin; Shah, Lawrence; Richardson, Martin

    2014-02-01

    We present the design and challenges of a diode-pumped solid-state (DPSS) system to amplify picosecond pulses to high pulse energies and high average powers. We discuss our implemented solutions to mitigate thermal effects and present the obtained performance of the picosecond pulse amplification at the multi-10-MW level. Our here presented picosecond DPSS laser is well suited for pumping an optical parametric chirped-pulse amplification (OPCPA) system. Several laser technologies have been employed to pump OPCPA systems and we show how our DPSS system compares in performance to the other approaches.

  7. A model system for pathogen detection using a two-component bacteriophage/bioluminescent signal amplification assay

    Science.gov (United States)

    Bright, Nathan G.; Carroll, Richard J.; Applegate, Bruce M.

    2004-03-01

    Microbial contamination has become a mounting concern the last decade due to an increased emphasis of minimally processed food products specifically produce, and the recognition of foodborne pathogens such as Campylobacter jejuni, Escherichia coli O157:H7, and Listeria monocytogenes. This research investigates a detection approach utilizing bacteriophage pathogen specificity coupled with a bacterial bioluminescent bioreporter utilizing the quorum sensing molecule from Vibrio fischeri, N-(3-oxohexanoyl)-homoserine lactone (3-oxo-C6-HSL). The 3-oxo-C6-HSL molecules diffuse out of the target cell after infection and induce bioluminescence from a population of 3-oxo-C6-HSL bioreporters (ROLux). E. coli phage M13, a well-characterized bacteriophage, offers a model system testing the use of bacteriophage for pathogen detection through cell-to-cell communication via a LuxR/3-oxo-C6-HSL system. Simulated temperate phage assays tested functionality of the ROLux reporter and production of 3-oxo-C6-HSL by various test strains. These assays showed detection limits of 102cfu after 24 hours in a varietry of detection formats. Assays incorporating the bacteriophage M13-luxI with the ROLux reporter and a known population of target cells were subsequently developed and have shown consistent detection limits of 105cfu target organisms. Measurable light response from high concentrations of target cells was almost immediate, suggesting an enrichment step to further improve detection limits and reduce assay time.

  8. Optical Pattern Recognition With Self-Amplification

    Science.gov (United States)

    Liu, Hua-Kuang

    1994-01-01

    In optical pattern recognition system with self-amplification, no reference beam used in addressing mode. Polarization of laser beam and orientation of photorefractive crystal chosen to maximize photorefractive effect. Intensity of recognition signal is orders of magnitude greater than other optical correlators. Apparatus regarded as real-time or quasi-real-time optical pattern recognizer with memory and reprogrammability.

  9. Cost analysis of nucleic acid amplification for diagnosing pulmonary tuberculosis, within the context of the Brazilian Unified Health Care System.

    Science.gov (United States)

    Pinto, Márcia; Entringer, Aline Piovezan; Steffen, Ricardo; Trajman, Anete

    2015-01-01

    We estimated the costs of a molecular test for Mycobacterium tuberculosis and resistance to rifampin (Xpert MTB/RIF) and of smear microscopy, within the Brazilian Sistema Único de Saúde (SUS, Unified Health Care System). In SUS laboratories in the cities of Rio de Janeiro and Manaus, we performed activity-based costing and micro-costing. The mean unit costs for Xpert MTB/RIF and smear microscopy were R$35.57 and R$14.16, respectively. The major cost drivers for Xpert MTB/RIF and smear microscopy were consumables/reagents and staff, respectively. These results might facilitate future cost-effectiveness studies and inform the decision-making process regarding the expansion of Xpert MTB/RIF use in Brazil. PMID:26785963

  10. Cost analysis of nucleic acid amplification for diagnosing pulmonary tuberculosis, within the context of the Brazilian Unified Health Care System.

    Science.gov (United States)

    Pinto, Márcia; Entringer, Aline Piovezan; Steffen, Ricardo; Trajman, Anete

    2015-01-01

    We estimated the costs of a molecular test for Mycobacterium tuberculosis and resistance to rifampin (Xpert MTB/RIF) and of smear microscopy, within the Brazilian Sistema Único de Saúde (SUS, Unified Health Care System). In SUS laboratories in the cities of Rio de Janeiro and Manaus, we performed activity-based costing and micro-costing. The mean unit costs for Xpert MTB/RIF and smear microscopy were R$35.57 and R$14.16, respectively. The major cost drivers for Xpert MTB/RIF and smear microscopy were consumables/reagents and staff, respectively. These results might facilitate future cost-effectiveness studies and inform the decision-making process regarding the expansion of Xpert MTB/RIF use in Brazil.

  11. Cost analysis of nucleic acid amplification for diagnosing pulmonary tuberculosis, within the context of the Brazilian Unified Health Care System

    Directory of Open Access Journals (Sweden)

    Márcia Pinto

    2015-12-01

    Full Text Available ABSTRACT We estimated the costs of a molecular test for Mycobacterium tuberculosis and resistance to rifampin (Xpert MTB/RIF and of smear microscopy, within the Brazilian Sistema Único de Saúde (SUS, Unified Health Care System. In SUS laboratories in the cities of Rio de Janeiro and Manaus, we performed activity-based costing and micro-costing. The mean unit costs for Xpert MTB/RIF and smear microscopy were R$35.57 and R$14.16, respectively. The major cost drivers for Xpert MTB/RIF and smear microscopy were consumables/reagents and staff, respectively. These results might facilitate future cost-effectiveness studies and inform the decision-making process regarding the expansion of Xpert MTB/RIF use in Brazil.

  12. Cost analysis of nucleic acid amplification for diagnosing pulmonary tuberculosis, within the context of the Brazilian Unified Health Care System

    Science.gov (United States)

    Pinto, Márcia; Entringer, Aline Piovezan; Steffen, Ricardo; Trajman, Anete

    2015-01-01

    ABSTRACT We estimated the costs of a molecular test for Mycobacterium tuberculosis and resistance to rifampin (Xpert MTB/RIF) and of smear microscopy, within the Brazilian Sistema Único de Saúde (SUS, Unified Health Care System). In SUS laboratories in the cities of Rio de Janeiro and Manaus, we performed activity-based costing and micro-costing. The mean unit costs for Xpert MTB/RIF and smear microscopy were R$35.57 and R$14.16, respectively. The major cost drivers for Xpert MTB/RIF and smear microscopy were consumables/reagents and staff, respectively. These results might facilitate future cost-effectiveness studies and inform the decision-making process regarding the expansion of Xpert MTB/RIF use in Brazil. PMID:26785963

  13. Polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) and amplification refractory mutation system (ARMS) analyses of medicinally used Rheum species and their application for identification of Rhei Rhizoma.

    Science.gov (United States)

    Yang, Dong-Ye; Fushimi, Hirotoshi; Cai, Shao-Qing; Komatsu, Katsuko

    2004-05-01

    Previously, we have determined marker nucleotides on the chloroplast matK gene to identify Rheum palmatum, R. tanguticum and R. officinale used as Rhei Rhizoma officially. In the present study, we further developed a convenient and efficient identification method on the basis of marker nucleotides with Amplification Refractory Mutation System analysis. On the basis of the nucleotide substitutions at positions 367 and 937 among the three species on the matK gene, at each position two kinds of reverse primers with complementary 3'-terminal nucleotides were designed. Upon PCR amplification using three sets of primers and template DNA from each species, one or two fragments (202 bp or/and 770 bp) were detected. As the resultant three fragment profiles were species-specific, the procedure enabled us to classify the botanic origins of 22 drug samples of Rhei Rhizoma. PMID:15133241

  14. Efficient Audio Power Amplification - Challenges

    DEFF Research Database (Denmark)

    Andersen, Michael Andreas E.

    2005-01-01

    For more than a decade efficient audio power amplification has evolved and today switch-mode audio power amplification in various forms are the state-of-the-art. The technical steps that lead to this evolution are described and in addition many of the challenges still to be faced and where extens...

  15. Efficient audio power amplification - challenges

    Energy Technology Data Exchange (ETDEWEB)

    Andersen, Michael A.E.

    2005-07-01

    For more than a decade efficient audio power amplification has evolved and today switch-mode audio power amplification in various forms are the state-of-the-art. The technical steps that lead to this evolution are described and in addition many of the challenges still to be faced and where extensive research and development are needed is covered. (au)

  16. Etude du lasage transverse dans les cristaux de Ti : Sa de grandes dimensions. Application à la réalisation de l'amplificateur petawatt haute énergie du laser pilote de la station LASERIX

    OpenAIRE

    Ple, Fabien

    2007-01-01

    This manuscript presents experimental and theoretical works accomplished for the development of the LASERIX laser driver. The main goal of this thesis work was to design a high energy and high repetition rate titanium doped sapphire amplifier (Ti:Sa) allowing to reach an energy of 40J at a repetition rate of 0.1Hz before compression.After a general description of amplification in chirped pulse amplification Ti:Sa laser systems (Chapter 1), I present the two particular developments we made dur...

  17. Hybrid high-energy high-power pulsewidth-tunable picosecond source.

    Science.gov (United States)

    Pouysegur, Julien; Guichard, Florent; Zaouter, Yoann; Hanna, Marc; Druon, Frédéric; Hönninger, Clemens; Mottay, Eric; Georges, Patrick

    2015-11-15

    A hybrid ytterbium-doped fiber-bulk laser source allowing the generation of 3 ps, 350 μJ, 116 MW peak power Fourier transform-limited pulses at 50 kHz repetition rate and 1030 nm wavelength is described. Pulse duration tunability is provided by an adjustable spectral compression-based seeder system. Energy scaling capabilities of the architecture by use of the divided-pulse amplification method are investigated. This source provides a robust, compact, and versatile solution for applications such as RF photocathode guns, x- and γ-ray generation by inverse Compton scattering, and optical parametric chirped-pulse amplification pumping.

  18. Hybrid high-energy high-power pulsewidth-tunable picosecond source.

    Science.gov (United States)

    Pouysegur, Julien; Guichard, Florent; Zaouter, Yoann; Hanna, Marc; Druon, Frédéric; Hönninger, Clemens; Mottay, Eric; Georges, Patrick

    2015-11-15

    A hybrid ytterbium-doped fiber-bulk laser source allowing the generation of 3 ps, 350 μJ, 116 MW peak power Fourier transform-limited pulses at 50 kHz repetition rate and 1030 nm wavelength is described. Pulse duration tunability is provided by an adjustable spectral compression-based seeder system. Energy scaling capabilities of the architecture by use of the divided-pulse amplification method are investigated. This source provides a robust, compact, and versatile solution for applications such as RF photocathode guns, x- and γ-ray generation by inverse Compton scattering, and optical parametric chirped-pulse amplification pumping. PMID:26565830

  19. Complementary weak-value amplification with concatenated postselections

    CERN Document Server

    Viza, Gerardo I; Liu, Wei-Tao; Howell, John C

    2016-01-01

    We measure a transverse momentum kick in a Sagnac interferometer using weak-value amplification with two postselections. The first postselection is controlled by a polarization dependent phase mismatch between both paths of a Sagnac interferometer and the second postselection is controlled by a polarizer at the exit port. By monitoring the darkport of the interferometer, we study the complementary amplification of the concatenated postselections, where the polarization extinction ratio is greater than the contrast of the spatial interference. In this case, we find an improvement in the amplification of the signal of interest by introducing a second postselection to the system.

  20. Establishment and Optimization of ISSR-PCR Amplification System in Squash%南瓜 ISSR-PCR 反应体系的建立与优化

    Institute of Scientific and Technical Information of China (English)

    朱海生; 卢丽芳; 温庆放; 林义章

    2014-01-01

    为获得南瓜 ISSR 最优扩增体系,为后续南瓜的遗传多样性分析和亲缘关系鉴定奠定基础,本研究以‘密本’南瓜为筛选体系材料,采用单因素试验,对 ISSR 反应体系的 Mg2+、dNTP、Taq 酶、引物和 DNA 浓度等5个因素进行优化。研究结果表明,南瓜 ISSR 25μL 最佳反应体系为:2.5μL 10×Buffer,2.0 mmol/L Mg2+,0.3 mmol/L dNTP,1 U Taq 酶,0.48 mmol/L 引物,75 ng 的 DNA。在此基础上,对筛选出的12条引物进行退火温度的优化,最终确定每条引物的最佳退火温度。利用该反应体系,选用引物891对85个南瓜品种进行所确立扩增体系的验证,结果显示扩增产物条带清晰明亮、多态性丰富,且特异性强、重复性好,表明本研究所确定的反应体系适用于南瓜的 ISSR 分子标记。%In order to obtain the ISSR-PCR reaction system of Squash, We took an optimization experiment with single factor design which was concentrated on five factors of Mg2+, dNTP, Taq DNA polymerase, primer and template DNA by using the squash ‘miben’as the material of filter system to set up a good foundation of analy-sing the genetic diversity and relationship identification of Squash. The test result showed that the greatest 25 μL ISSR reaction system which contained 2.5 μL 10×Buffer, 2.0 mmol/L Mg2+, 0.3 mmol/L dNTP, 1 U Taq DNA polymerase, 0.48 mmol/L primer, 75 ng template DNA. On this basis, optimized annealing temperature of 12 primers which have been screened, and ultimately determined the optimal annealing temperature of each primer. 85 squashes were amplified with primer 891 under the optimized reaction conditions. The test result showed the amplification products which were clear and bright, abundant polymorphism, strong specificity and good repeatability. Accordingly, it was suitable for ISSR analysis of squash.

  1. All Fiber Technology for High-Energy Petawatt Front End Laser Systems

    Energy Technology Data Exchange (ETDEWEB)

    Dawson, J W; Liao, Z M; Jovanovic, I; Wattellier, B; Beach, R; Payne, S A; Barty, C P J

    2003-09-05

    We are developing an all fiber front end for the next generation high-energy petawatt (HEPW) laser at Lawrence Livermore National Laboratory (LLNL). The ultimate goal of the LLNL HEPW effort is to generate 5-kJ pulses capable of compression to 5ps at 1053nm, enabling advanced x-ray backlighters and possible demonstration of fast ignition. We discuss the front-end of the laser design from the fiber master oscillator, which generates the mode-locked 20nm bandwidth initial pulses through the 10mJ output of the large flattened mode (LFM) fiber amplifier. Development of an all fiber front end requires technological breakthroughs in the key areas of the master oscillator and fiber amplification. Chirped pulse amplification in optical fibers has been demonstrated to 1mJ. Further increase is limited by the onset of stimulated Raman scattering (SRS). We have recently demonstrated a new flattened mode fiber technology, which reduces peak power for a given energy and thus the onset of SRS. Controlled experiments with 1st generation fibers yielded 0.5mJ of energy while significantly increasing the point at which nonlinear optical effects degrade the amplified pulse. In this paper we will discuss our efforts to extend this work to greater than 20mJ using our large flattened mode fiber amplifier.

  2. Isothermal DNA amplification strategies for duplex microorganism detection.

    Science.gov (United States)

    Santiago-Felipe, Sara; Tortajada-Genaro, Luis Antonio; Morais, Sergi; Puchades, Rosa; Maquieira, Ángel

    2015-05-01

    A valid solution for micro-analytical systems is the selection of a compatible amplification reaction with a simple, highly-integrated efficient design that allows the detection of multiple genomic targets. Two approaches under isothermal conditions are presented: recombinase polymerase amplification (RPA) and multiple displacement amplification (MDA). Both methods were applied to a duplex assay specific for Salmonella spp. and Cronobacter spp., with excellent amplification yields (0.2-8.6 · 10(8) fold). The proposed approaches were successfully compared to conventional PCR and tested for the milk sample analysis as a microarray format on a compact disc (support and driver). Satisfactory results were obtained in terms of resistance to inhibition, selectivity, sensitivity (10(1)-10(2)CFU/mL) and reproducibility (below 12.5%). The methods studied are efficient and cost-effective, with a high potential to automate microorganisms detection by integrated analytical systems working at a constant low temperature.

  3. Aerosol Lidar for the Relative Backscatter Amplification Measurements

    Science.gov (United States)

    Razenkov, Igor A.; Banakh, Victor A.; Nadeev, Alexander I.

    2016-06-01

    Backscatter amplification presents only in a turbulent atmosphere, when the laser beam is propagates twice through the same inhomogeneities. We proposed technical solution to detect backscatter amplification. An aerosol micro pulse lidar with a beam expansion via receiving telescope was built to study this effect. Our system allows simultaneous detection of two returns from the same scattering volume: exactly on the axis of the laser beam and off the axis.

  4. Aerosol Lidar for the Relative Backscatter Amplification Measurements

    Directory of Open Access Journals (Sweden)

    Razenkov Igor A.

    2016-01-01

    Full Text Available Backscatter amplification presents only in a turbulent atmosphere, when the laser beam is propagates twice through the same inhomogeneities. We proposed technical solution to detect backscatter amplification. An aerosol micro pulse lidar with a beam expansion via receiving telescope was built to study this effect. Our system allows simultaneous detection of two returns from the same scattering volume: exactly on the axis of the laser beam and off the axis.

  5. A mechanism of gene amplification driven by small DNA fragments.

    Directory of Open Access Journals (Sweden)

    Kuntal Mukherjee

    Full Text Available DNA amplification is a molecular process that increases the copy number of a chromosomal tract and often causes elevated expression of the amplified gene(s. Although gene amplification is frequently observed in cancer and other degenerative disorders, the molecular mechanisms involved in the process of DNA copy number increase remain largely unknown. We hypothesized that small DNA fragments could be the trigger of DNA amplification events. Following our findings that small fragments of DNA in the form of DNA oligonucleotides can be highly recombinogenic, we have developed a system in the yeast Saccharomyces cerevisiae to capture events of chromosomal DNA amplification initiated by small DNA fragments. Here we demonstrate that small DNAs can amplify a chromosomal region, generating either tandem duplications or acentric extrachromosomal DNA circles. Small fragment-driven DNA amplification (SFDA occurs with a frequency that increases with the length of homology between the small DNAs and the target chromosomal regions. SFDA events are triggered even by small single-stranded molecules with as little as 20-nt homology with the genomic target. A double-strand break (DSB external to the chromosomal amplicon region stimulates the amplification event up to a factor of 20 and favors formation of extrachromosomal circles. SFDA is dependent on Rad52 and Rad59, partially dependent on Rad1, Rad10, and Pol32, and independent of Rad51, suggesting a single-strand annealing mechanism. Our results reveal a novel molecular model for gene amplification, in which small DNA fragments drive DNA amplification and define the boundaries of the amplicon region. As DNA fragments are frequently found both inside cells and in the extracellular environment, such as the serum of patients with cancer or other degenerative disorders, we propose that SFDA may be a common mechanism for DNA amplification in cancer cells, as well as a more general cause of DNA copy number variation

  6. Parametric nanomechanical amplification at very high frequency.

    Science.gov (United States)

    Karabalin, R B; Feng, X L; Roukes, M L

    2009-09-01

    Parametric resonance and amplification are important in both fundamental physics and technological applications. Here we report very high frequency (VHF) parametric resonators and mechanical-domain amplifiers based on nanoelectromechanical systems (NEMS). Compound mechanical nanostructures patterned by multilayer, top-down nanofabrication are read out by a novel scheme that parametrically modulates longitudinal stress in doubly clamped beam NEMS resonators. Parametric pumping and signal amplification are demonstrated for VHF resonators up to approximately 130 MHz and provide useful enhancement of both resonance signal amplitude and quality factor. We find that Joule heating and reduced thermal conductance in these nanostructures ultimately impose an upper limit to device performance. We develop a theoretical model to account for both the parametric response and nonequilibrium thermal transport in these composite nanostructures. The results closely conform to our experimental observations, elucidate the frequency and threshold-voltage scaling in parametric VHF NEMS resonators and sensors, and establish the ultimate sensitivity limits of this approach.

  7. Non-instrumented nucleic acid amplification assay

    Science.gov (United States)

    Weigl, Bernhard H.; Domingo, Gonzalo; Gerlach, Jay; Tang, Dennis; Harvey, Darrel; Talwar, Nick; Fichtenholz, Alex; van Lew, Bill; LaBarre, Paul

    2008-02-01

    We have developed components of a diagnostic disposable platform that has the dual purpose of providing molecular diagnostics at the point of care (POC) as well as stabilizing specimens for further analysis via a centralized surveillance system. This diagnostic is targeted for use in low-resource settings by minimally trained health workers. The disposable device does not require any additional instrumentation and will be almost as rapid and simple to use as a lateral flow strip test - yet will offer the sensitivity and specificity of nucleic acid amplification tests (NAATs). The low-cost integrated device is composed of three functional components: (1) a sample-processing subunit that generates clean and stabilized DNA from raw samples containing nucleic acids, (2) a NA amplification subunit, and (3) visual amplicon detection sub-unit. The device integrates chemical exothermic heating, temperature stabilization using phase-change materials, and isothermal nucleic acid amplification. The aim of developing this system is to provide pathogen detection with NAAT-level sensitivity in low-resource settings where there is no access to instrumentation. If a disease occurs, patients would be tested with the disposable in the field. A nucleic acid sample would be preserved within the spent disposable which could be sent to a central laboratory facility for further analysis if needed.

  8. Engineering targeted chromosomal amplifications in human breast epithelial cells.

    Science.gov (United States)

    Springer, Simeon; Yi, Kyung H; Park, Jeenah; Rajpurohit, Anandita; Price, Amanda J; Lauring, Josh

    2015-07-01

    Chromosomal amplifications are among the most common genetic alterations found in human cancers. However, experimental systems to study the processes that lead to specific, recurrent amplification events in human cancers are lacking. Moreover, some common amplifications, such as that at 8p11-12 in breast cancer, harbor multiple driver oncogenes, which are poorly modeled by conventional overexpression approaches. We sought to develop an experimental system to model recurrent chromosomal amplification events in human cell lines. Our strategy is to use homologous-recombination-mediated gene targeting to deliver a dominantly selectable, amplifiable marker to a specified chromosomal location. We used adeno-associated virus vectors to target human MCF-7 breast cancer cells at the ZNF703 locus, in the recurrent 8p11-12 amplicon, using the E. coli inosine monophosphate dehydrogenase (IMPDH) enzyme as a marker. We applied selective pressure using IMPDH inhibitors. Surviving clones were found to have increased copy number of ZNF703 (average 2.5-fold increase) by droplet digital PCR and FISH. Genome-wide array comparative genomic hybridization confirmed that amplifications had occurred on the short arm of chromosome 8, without changes on 8q or other chromosomes. Patterns of amplification were variable and similar to those seen in primary human breast cancers, including "sawtooth" patterns, distal copy number loss, and large continuous regions of copy number gain. This system will allow study of the cis- and trans-acting factors that are permissive for chromosomal amplification and provide a model to analyze oncogene cooperativity in amplifications harboring multiple candidate driver genes.

  9. Nonlinear Zel'dovich effect: Parametric amplification from medium rotation

    CERN Document Server

    Faccio, Daniele

    2016-01-01

    The interaction of light with rotating media has attracted recent interest for both fundamental and applied studies including rotational Doppler shift measurements. It is also possible to obtain amplification through the scattering of light with orbital angular momentum from a rotating and absorbing cylinder, as proposed by Zel'dovich more than 40 years ago. This amplification mechanism has never been observed experimentally yet has connections to other fields such as Penrose superradiance in rotating black holes. Here we propose a nonlinear optics system whereby incident light carrying orbital angular momentum drives parametric interaction in a rotating medium. The crystal rotation is shown to take the phase-mismatched parametric interaction with negligible energy exchange at zero rotation to amplification for sufficiently large rotation rates. The amplification is shown to result from breaking of anti-PT symmetry induced by the medium rotation.

  10. High average power Yb:CaF2 femtosecond amplifier with integrated simultaneous spatial and temporal focusing for laser material processing

    Science.gov (United States)

    Squier, J.; Thomas, J.; Block, E.; Durfee, C.; Backus, S.

    2014-01-01

    A watt level, 10-kz repetition rate chirped pulse amplification system that has an integrated simultaneous spatial and temporal focusing (SSTF) processing system is demonstrated for the first time. SSTF significantly reduces nonlinear effects normally detrimental to beam control enabling the use of a low numerical aperture focus to quickly treat optically transparent materials over a large area. The integrated SSTF system has improved efficiency compared to previously reported SSTF designs, which combined with the high-repetition rate of the laser, further optimizes its capability to provide rapid, large volume processing.

  11. Adaptive base-isolation of civil structures using variable amplification

    Institute of Scientific and Technical Information of China (English)

    Kenneth K. Walsh; Makola M. Abdullah

    2006-01-01

    Semi-active dampers are used in base-isolation to reduce the seismic response of civil engineering structures.In the present study, a new semi-active damping system using variable amplification will be investigated for adaptive baseisolation. It uses a novel variable amplification device (VAD) connected in series with a passive damper. The VAD is capable of producing multiple amplification factors, each corresponding to a different amplification state. Forces from the damper are amplified to the structure according to the current amplification state, which is selected via a semi-active control algorithm specifically tailored to the system's unique damping characteristics. To demonstrate the effectiveness of the VAD-damper system for adaptive base-isolation, numerical simulations are conducted for three and seven-story base-isolated buildings subject to both far and near-field ground motions. The results indicate that the system can achieve significant reductions in response compared to the base-isolated buildings with no damper. The proposed system is also found to perform well compared to a typical semi-active damper.

  12. Pulse Compression by Filamentation in Argon with an Acoustic Optical Programmable Dispersive Filter for Predispersion Compensation

    Institute of Scientific and Technical Information of China (English)

    CHEN Xiao-Wei; JIANG Yong-Liang; LENG Yu-Xin; LIU Jun; GE Xiao-Chun; LI Ru-Xin; XU Zhi-Zhan

    2006-01-01

    @@ We have experimentally demonstrated pulses 0.4 mJ in duration smaller than 12 fs with an excellent spatial beam profile by self-guided propagation in argon. The original 52fs pulses from the chirped pulsed amplification laser system are first precompressed to 32 fs by inserting an acoustic optical programmable dispersive filter instrument into the laser system for spectrum reshaping and dispersion compensation, and the pulse spectrum is subsequently broadened by filamentation in an argon cell. By using chirped mirrors for post-dispersion compensation, the pulses are successfully compressed to smaller than 12fs.

  13. Introduction of SILEX-I Femto-second Ti:sapphire laser Facility

    Science.gov (United States)

    Zhu, Qihua; Peng, Hansheng; Wei, Xiaofeng; Huang, Xiaojun; Zhang, Xiaomin; Wang, Xiaodong; Zhou, Kainan; Liu, Lanqin; Zeng, Xiaoming; Wang, Xiao; Guo, Yi; Lin, Donghui; Xu, Bing; Chu, Xiaoling

    2007-06-01

    We have built a Ti:sapphire laser system, referred to as SILEX-I, with a peak power of 286TW for a pulse duration of 30fs using chirped-pulse amplification technique. A number of spectral and spatio-temporal beam control measures have been taken and near-diffraction limited focal spots have been obtained which, to our knowledge, are the best far fields ever measured for any existing high-power Ti:sapphire laser system without deformable mirror corrections.

  14. Introduction of SILEX-I Femto-second Ti:sapphire laser Facility

    Energy Technology Data Exchange (ETDEWEB)

    Zhu Qihua; Peng Hansheng; Wei Xiaofeng; Huang Xiaojun; Zhang Xiaomin; Wang Xiaodong; Zhou Kainan; Liu Lanqin; Zeng Xiaoming; Wang Xiao; Guo Yi; Lin Donghui; Xu Bing; Chu Xiaoling [National Key Laboratory of Laser Fusion Research Center of Laser Fusion, China Academy of Engineering Physics, PO Box 919-988, Mianyang, 621900 (China)

    2007-06-15

    We have built a Ti:sapphire laser system, referred to as SILEX-I, with a peak power of 286TW for a pulse duration of 30fs using chirped-pulse amplification technique. A number of spectral and spatio-temporal beam control measures have been taken and near-diffraction limited focal spots have been obtained which, to our knowledge, are the best far fields ever measured for any existing high-power Ti:sapphire laser system without deformable mirror corrections.

  15. Amplification Effects and Unconventional Monetary Policies

    Directory of Open Access Journals (Sweden)

    Cécile BASTIDON GILLES

    2012-02-01

    Full Text Available Global financial crises trigger off amplification effects, which allow relatively small shocks to propagate through the whole financial system. For this reason, the range of Central banks policies is now widening beyond conventional monetary policies and lending of last resort. The aim of this paper is to establish a rule for this practice. The model is based on the formalization of funding conditions in various types of markets. We conduct a comprehensive analysis of the “unconventional monetary policies”, and especially quantify government bonds purchases by the Central bank.

  16. Broadband excitation by chirped pulses: application to single electron spins in diamond

    International Nuclear Information System (INIS)

    Pulsed excitation of broad spectra requires very high field strengths if monochromatic pulses are used. If the corresponding high power is not available or not desirable, the pulses can be replaced by suitable low-power pulses that distribute the power over a wider bandwidth. As a simple case, we use microwave pulses with a linear frequency chirp. We use these pulses to excite spectra of single nitrogen–vacancy centres in a Ramsey experiment. Compared to the conventional Ramsey experiment, our approach increases the bandwidth by at least an order of magnitude. Compared to the conventional continuous wave-ODMR experiment, the chirped Ramsey experiment does not suffer from power broadening and increases the resolution by at least an order of magnitude. As an additional benefit, the chirped Ramsey spectrum contains not only ‘allowed’ single quantum transitions, but also ‘forbidden’ zero- and double quantum transitions, which can be distinguished from the single quantum transitions by phase-shifting the readout pulse with respect to the excitation pulse or by variation of the external magnetic field strength. (paper)

  17. The chirped-pulse free-electron laser: Final technical report, September 1987--October 1988

    International Nuclear Information System (INIS)

    This is the final report of a theoretical and numerical investigation into the operation of pulsed free-electron lasers in which the electron energy depends on the time of injection into the wiggler. Such energy ''chirping'' over each of a train of electron micropulses injected into an FEL oscillator is expected to give rise to a laser pulse inside the optical resonator with a chirped carrier frequency ω/sub s/(/tau/)

  18. Comprehensive human genome amplification using multiple displacement amplification

    OpenAIRE

    Dean, Frank B.; Hosono, Seiyu; Fang, Linhua; Wu, Xiaohong; Faruqi, A. Fawad; Bray-Ward, Patricia; Zhenyu SUN; Zong, Qiuling; Du, Yuefen; Du, Jing; Driscoll, Mark; Song, Wanmin; Kingsmore, Stephen F.; Egholm, Michael; Lasken, Roger S.

    2002-01-01

    Fundamental to most genetic analysis is availability of genomic DNA of adequate quality and quantity. Because DNA yield from human samples is frequently limiting, much effort has been invested in developing methods for whole genome amplification (WGA) by random or degenerate oligonucleotide-primed PCR. However, existing WGA methods like degenerate oligonucleotide-primed PCR suffer from incomplete coverage and inadequate average DNA size. We describe a method, termed multi...

  19. Influence of environmental noise on the weak value amplification

    Science.gov (United States)

    Zhu, Xuannmin; Zhang, Yu-Xiang

    2016-05-01

    Quantum systems are always disturbed by environmental noise. We have investigated the influence of the environmental noise on the amplification in weak measurements. Three typical quantum noise processes are discussed in this article. The maximum expectation values of the observables of the measuring device decrease sharply with the strength of the depolarizing and phase damping channels, while the amplification effect of weak measurement is immune to the amplitude damping noise. To obtain significantly amplified signals, we must ensure that the preselection quantum systems are kept away from the depolarizing and phase damping processes.

  20. Influence of environmental noise on the weak value amplification

    Science.gov (United States)

    Zhu, Xuannmin; Zhang, Yu-Xiang

    2016-08-01

    Quantum systems are always disturbed by environmental noise. We have investigated the influence of the environmental noise on the amplification in weak measurements. Three typical quantum noise processes are discussed in this article. The maximum expectation values of the observables of the measuring device decrease sharply with the strength of the depolarizing and phase damping channels, while the amplification effect of weak measurement is immune to the amplitude damping noise. To obtain significantly amplified signals, we must ensure that the preselection quantum systems are kept away from the depolarizing and phase damping processes.

  1. An analysis of As2S3 chirped fiber grating formed by two-photon absorption effect

    Institute of Scientific and Technical Information of China (English)

    Huaisheng Wang(王淮生); Zhigang Zhang(张志刚); Lu Chai(柴路); Qingyue Wang(王清月)

    2003-01-01

    When femtosecond laser pulses interfere with chirped femtosecond laser pulses in As2S3 fiber, a chirped fiber grating is formed. An analytical expression is given to describe the chirped grating, and its Bragg reflectivity is calculated. Because of the high photosensitive effect of As2S3 material, the chirped fiber grating has a wide Bragg reflective spectrum and high reflectivity by choosing proper parameters. This indicates that the chirped fiber grating can be used as a stretcher in the femtosecond chirped pulse amplification (CPA) system.

  2. Achieving relativistic interaction intensities on Vulcan

    International Nuclear Information System (INIS)

    Vulcan is a multi-beam, Nd:glass, ultra-high power laser facility situated at the Central Laser Facility (CLF) in the Rutherford Appleton Laboratory (RAL). Recent developments have generated intensities on target up to 1020 W cm-2. This is achieved by delivering a high energy, ultra-short pulse using the technique of Chirped Pulse Amplification (CPA), in a high quality beam that is close to the diffraction limit. This report presents the current capabilities of the system and progress in the 1 Peta-watt upgrade of the facility. (authors)

  3. 苔藓植物matK基因PCR反应体系的建立和优化%Establishment and Optimization of matK gene-PCR Amplification System for Bryophytes

    Institute of Scientific and Technical Information of China (English)

    郑红建; 张安世

    2012-01-01

    [Objective] To establish and optimize the matK gene-PCR reaction system for Bryophytes. [ Method ] Using genomic DNA of Bryo-phytes extracted via an improved CTAB method, single factor analysis was performed to investigate the impacts of DNA template concentration, primer concentration, 2 x Taq MasterMix concentration on matK gene-PCR amplification and to optimize this system for Bryophytes. [Result] The matK gene-PCR amplification(10.0 μl) suitable for Bryophytes was determined to be composed of 0.5 μl DNA, 0.2 μl primer and 5.6 μl 2 × Taq MasterMix. [ Conclusion] The study laid basis for analyzing the molecular systematics of Bryophytes.%[目的]建立和优化适合于苔藓植物matK基因的PCR反应体系.[方法]以鳞叶藓为材料,利用改良CTAB法提取了基因组DNA,利用单因素试验分析了DNA模板、引物和2×Taq MasterMix的浓度对苔藓植物matK基因PCR反应的影响,对适合苔藓植物的matK基因PCR反应条件进行了优化.[结果]适合苔藓植物的matK基因PCR反应体系为10.0 μl,其中含DNA模板0.5μl,正反引物各0.2μl,2×Taq MasterMix 5.6 μl.[结论]为苔藓植物的分子系统学等研究奠定了基础.

  4. A study on single lane-change manoeuvres for determining rearward amplification of multi-trailer articulated heavy vehicles with active trailer steering systems

    Science.gov (United States)

    Wang, Qiushi; He, Yuping

    2016-01-01

    The Society of Automotive Engineers issued a test procedure, SAE-J2179, to determine the rearward amplification (RA) of multi-trailer articulated heavy vehicles (MTAHVs). Built upon the procedure, the International Organization for Standardization released the test manoeuvres, ISO-14791, for evaluating directional performance of MTAHVs. For the RA measures, ISO-14791 recommends two single lane-change manoeuvres: (1) an open-loop procedure with a single sine-wave steering input; and (2) a closed-loop manoeuvre with a single sine-wave lateral acceleration input. For an articulated vehicle with active trailer steering (ATS), the RA measure in lateral acceleration under the open-loop manoeuvre was not in good agreement with that under the closed-loop manoeuvre. This observation motivates the research on the applicability of the two manoeuvres for the RA measures of MTAHVs with ATS. It is reported that transient response under the open-loop manoeuvre often leads to asymmetric curve of tractor lateral acceleration [Winkler CB, Fancher PS, Bareket Z, Bogard S, Johnson G, Karamihas S, Mink C. Heavy vehicle size and weight - test procedures for minimum safety performance standards. Final technical report, NHTSA, US DOT, contract DTNH22-87-D-17174, University of Michigan Transportation Research Institute, Report No. UMTRI-92-13; 1992]. To explore the effect of the transient response, a multiple cycle sine-wave steering input (MCSSI) manoeuvre is proposed. Simulation demonstrates that the steady-state RA measures of an MTAHV with and without ATS under the MCSSI manoeuvre are in excellent agreement with those under the closed-loop manoeuvre. It is indicated that between the two manoeuvres by ISO-14791, the closed-loop manoeuvre is more applicable for determining the RA measures of MTAHVs with ATS.

  5. Spheromak Impedance and Current Amplification

    Energy Technology Data Exchange (ETDEWEB)

    Fowler, T K; Hua, D D; Stallard, B W

    2002-01-31

    It is shown that high current amplification can be achieved only by injecting helicity on the timescale for reconnection, {tau}{sub REC}, which determines the effective impedance of the spheromak. An approximate equation for current amplification is: dI{sub TOR}{sup 2}/dt {approx} I{sup 2}/{tau}{sub REC} - I{sub TOR}{sup 2}/{tau}{sub closed} where I is the gun current, I{sub TOR} is the spheromak toroidal current and {tau}{sub CLOSED} is the ohmic decay time of the spheromak. Achieving high current amplification, I{sub TOR} >> I, requires {tau}{sub REC} <<{tau}{sub CLOSED}. For resistive reconnection, this requires reconnection in a cold zone feeding helicity into a hot zone. Here we propose an impedance model based on these ideas in a form that can be implemented in the Corsica-based helicity transport code. The most important feature of the model is the possibility that {tau}{sub REC} actually increases as the spheromak temperature increases, perhaps accounting for the ''voltage sag'' observed in some experiments, and a tendency toward a constant ratio of field to current, B {proportional_to} I, or I{sub TOR} {approx} I. Program implications are discussed.

  6. Optimization of noncollinear optical parametric amplification

    Science.gov (United States)

    Schimpf, D. N.; Rothardt, J.; Limpert, J.; Tünnermann, A.

    2007-02-01

    Noncollinearly phase-matched optical parametric amplifiers (NOPAs) - pumped with the green light of a frequency doubled Yb-doped fiber-amplifier system 1, 2 - permit convenient generation of ultrashort pulses in the visible (VIS) and near infrared (NIR) 3. The broad bandwidth of the parametric gain via the noncollinear pump configuration allows amplification of few-cycle optical pulses when seeded with a spectrally flat, re-compressible signal. The short pulses tunable over a wide region in the visible permit transcend of frontiers in physics and lifescience. For instance, the resulting high temporal resolution is of significance for many spectroscopic techniques. Furthermore, the high magnitudes of the peak-powers of the produced pulses allow research in high-field physics. To understand the demands of noncollinear optical parametric amplification using a fiber pump source, it is important to investigate this configuration in detail 4. An analysis provides not only insight into the parametric process but also determines an optimal choice of experimental parameters for the objective. Here, the intention is to design a configuration which yields the shortest possible temporal pulse. As a consequence of this analysis, the experimental setup could be optimized. A number of aspects of optical parametric amplifier performance have been treated analytically and computationally 5, but these do not fully cover the situation under consideration here.

  7. Resonant amplification of quantum fluctuations in a spinor gas

    DEFF Research Database (Denmark)

    Topic, O.; Scherer, M.; Gebreyesus, G.;

    2010-01-01

    Bose-Einstein condensates of atoms with non-zero spin are known to constitute an ideal system to investigate fundamental properties of magnetic superfluids. More recently it was realized that they also provide the fascinating opportunity to investigate the macroscopic amplification of quantum and...

  8. Transient amplification limits noise suppression in biochemical networks

    Science.gov (United States)

    Dixon, John; Lindemann, Anika; McCoy, Jonathan H.

    2016-01-01

    Cell physiology is orchestrated, on a molecular level, through complex networks of biochemical reactions. The propagation of random fluctuations through these networks can significantly impact cell behavior, raising challenging questions about how network design shapes the cell's ability to suppress or exploit these fluctuations. Here, drawing on insights from statistical physics, fluid dynamics, and systems biology, we explore how transient amplification phenomena arising from network connectivity naturally limit a biochemical system's ability to suppress small fluctuations around steady-state behaviors. We find that even a simple system consisting of two variables linked by a single interaction is capable of amplifying small fluctuations orders of magnitude beyond the levels predicted by linear stability theory. We also find that adding additional interactions can promote further amplification, even when these interactions implement classic design strategies known to suppress fluctuations. These results establish that transient amplification is an essential factor determining baseline noise levels in stable intracellular networks. Significantly, our analysis is not bound to specific systems or interaction mechanisms: we find that noise amplification is an emergent phenomenon found near steady states in any network containing sufficiently strong interactions, regardless of its form or function.

  9. Heralded amplification of photonic qubits.

    Science.gov (United States)

    Bruno, Natalia; Pini, Vittorio; Martin, Anthony; Verma, Varun B; Nam, Sae Woo; Mirin, Richard; Lita, Adriana; Marsili, Francesco; Korzh, Boris; Bussières, Félix; Sangouard, Nicolas; Zbinden, Hugo; Gisin, Nicolas; Thew, Rob

    2016-01-11

    We demonstrate postselection free heralded qubit amplification for Time-Bin qubits and single photon states in an all-fibre, telecom-wavelength, scheme that highlights the simplicity, stability and potential for fully integrated photonic solutions. Exploiting high-efficiency superconducting detectors, the gain, fidelity and the performance of the amplifier are studied as a function of loss. We also demonstrate the first heralded single photon amplifier with independent sources. This provides a significant advance towards demonstrating device-independent quantum key distribution as well as fundamental tests of quantum mechanics over extended distances. PMID:26832244

  10. Resonant primordial gravitational waves amplification

    Directory of Open Access Journals (Sweden)

    Chunshan Lin

    2016-01-01

    Full Text Available We propose a mechanism to evade the Lyth bound in models of inflation. We minimally extend the conventional single-field inflation model in general relativity (GR to a theory with non-vanishing graviton mass in the very early universe. The modification primarily affects the tensor perturbation, while the scalar and vector perturbations are the same as the ones in GR with a single scalar field at least at the level of linear perturbation theory. During the reheating stage, the graviton mass oscillates coherently and leads to resonant amplification of the primordial tensor perturbation. After reheating the graviton mass vanishes and we recover GR.

  11. Reversible Gating of Plasmonic Coupling for Optical Signal Amplification.

    Science.gov (United States)

    Khoury, Christopher G; Fales, Andrew M; Vo-Dinh, Tuan

    2016-07-20

    Amplification of optical signals is useful for a wide variety of applications, ranging from data signal transmission to chemical sensing and biomedical diagnostics. One such application in chemical sensing is surface-enhanced Raman scattering (SERS), an important technique for increasing the Raman signal using the plasmonic effect of enhanced electromagnetic fields associated with metallic nanostructures. One of the most important limitations of SERS-based amplification is the difficulty to reproducibly control the SERS signal. Here, we describe the design and implementation of a unique hybrid system capable of producing reversible gating of plasmonic coupling for Raman signal amplification. The hybrid system is composed of two subsystems: (1) colloidal magneto-plasmonic nanoparticles for SERS enhancement and (2) a micromagnet substrate with an externally applied magnetic field to modulate the colloidal nanoparticles. For this proof of concept demonstration, the nanoparticles were labeled with a Raman-active dye, and it was shown that the detected SERS signal could be reproducibly modulated by controlling the externally applied magnetic field. The developed system provides a simple, robust, inexpensive, and reusable device for SERS signal modulation. These properties will open up new possibilities for optical signal amplification and gating as well for high-throughput, reproducible SERS detection.

  12. Reversible Gating of Plasmonic Coupling for Optical Signal Amplification.

    Science.gov (United States)

    Khoury, Christopher G; Fales, Andrew M; Vo-Dinh, Tuan

    2016-07-20

    Amplification of optical signals is useful for a wide variety of applications, ranging from data signal transmission to chemical sensing and biomedical diagnostics. One such application in chemical sensing is surface-enhanced Raman scattering (SERS), an important technique for increasing the Raman signal using the plasmonic effect of enhanced electromagnetic fields associated with metallic nanostructures. One of the most important limitations of SERS-based amplification is the difficulty to reproducibly control the SERS signal. Here, we describe the design and implementation of a unique hybrid system capable of producing reversible gating of plasmonic coupling for Raman signal amplification. The hybrid system is composed of two subsystems: (1) colloidal magneto-plasmonic nanoparticles for SERS enhancement and (2) a micromagnet substrate with an externally applied magnetic field to modulate the colloidal nanoparticles. For this proof of concept demonstration, the nanoparticles were labeled with a Raman-active dye, and it was shown that the detected SERS signal could be reproducibly modulated by controlling the externally applied magnetic field. The developed system provides a simple, robust, inexpensive, and reusable device for SERS signal modulation. These properties will open up new possibilities for optical signal amplification and gating as well for high-throughput, reproducible SERS detection. PMID:27347606

  13. Risk Perception and Social Amplification

    International Nuclear Information System (INIS)

    This paper seeks to consider social amplification as it applies to risk perception. Perceptions of the magnitude of a risk are conditioned by issues such as the degree of uncertainty in probability and consequences, the nature of the consequences and the relative weightings placed on probability and consequences. Risk perceptions are also influenced by factors such as confidence in the operator of an industrial process, trust in the regulator and the perceived fairness of regulatory decision-making. Different people may hold different views about these issues and there may also be difficulties in communication. The paper identifies and discusses self-reinforcing mechanisms, which will be labelled 'lock-in' here. They appear to apply in many situations where social amplification is observed. Historically, the term 'lock-in' has been applied mainly in the technological context but, in this paper, four types of lock-in are identified, namely scientific/technological, economic, social and institutional lock-in. One type of lock-in tends to lead to the next and all are buttressed by people's general acceptance of the familiar, fear of the unknown and resistance to change. The regulator seeks to make decisions which achieve the common good rather than supporting or perpetuating any set of vested interests. In this regard the locked-in positions of stakeholders, whether organisations, interest groups, or individual members of the public, are obstacles and challenges. Existing methods of consultation are unsatisfactory in terms of achieving a proper and productive level of dialogue with stakeholders

  14. 基于期望库存的供应链系统放大效应控制%Amplification effect control of supply chain system based on desired inventory

    Institute of Scientific and Technical Information of China (English)

    王海燕; 张冲; 佘光

    2012-01-01

    To control volatility of order and inventory as well as reduce the high operation costs in supply chain management,a state space model of supply chain system with multi-input and multi-output was established.Taking customer demand,expected net stock and expected work-in-process level as inputs,and the order quantity,net stock,work-in-process level and expected demand as outputs,the amplification effect of expected net stock and expected work-in-process level on order and inventory were studied.An improved selection method of expected net stock and expected work-in-process level was proposed.The results showed that the proposed selection method could control the orders and inventory amplification effects availably in case of other parameters unchanged.It could not increase the probability of out-of-stock and backlog,and also could reduce the effect of lead time on supply chain system.%为控制订单和库存放大效应并减少供应链高额的运作成本,建立了多输入多输出供应链系统状态空间模型。以顾客需求、期望净库存量和期望在途库存量为输入量,以订单、净库存、在途库存和预测需求为状态变量,研究期望净库存量和期望在途库存量对订单和库存放大的影响。提出期望净库存量和期望在途库存量的改进选取方法。研究表明,在其他参数不变的情况下,改进的期望净库存量和期望在途库存量选取方法可以有效控制供应链系统的订单和库存放大效应,不会增加缺货和库存积压的概率,且可以减少提前期对供应链系统的影响。

  15. Establishment and Optimization of Flipper Transposon PCR Amplification System of the Grape Botrytis cinerea%葡萄灰霉病菌 Flipper 转座子扩增体系的建立和优化

    Institute of Scientific and Technical Information of China (English)

    常佳迎; 寇宏达; 乔丹娜; 张艳杰; 赤国彤; 李亚宁; 李兴红; 刘大群

    2013-01-01

      Grape gray mold caused by Botrytic cinerea Pers.is one of the most important diseases on grapes worldwide.The genetic variation of Botrytis cinerea is widely and adaptable,which is easy to produce drug-resistant strains.It is reported that Boty and Flipper transposon of Botrytis cinerea are related to the presence or absence of resistant strains.By setting different gradient and optimize Botrytis cinerea Flipper transposon PCR amplification sys-tem of grape in China,including template DNA,primer,dNTPs,10 ×Taq 10 Buffer,Taq DNA polymerase,annea-ling temperature,cycle indexthe 1 159 bp fragment was obtained ,which has 99% similarity with Botryotinia fuckeli-ana Flipper transposable element transposase gene through NCBI blastn .So the amplified fragment is verified as ex-pected target fragment.The establishment and optimization of Flipper transposon PCR amplification system of the grape Botrytis cinerea in China provide an important foundation to further study of the relationship between the trans -posable elements,pathogenicity and resistant.%  通过对模板 DNA、Primer、dNTPs、10×Taq 10 Buffer、Taq 酶的不同浓度进行单因素筛选,并对退火温度和循环次数进行摸索,建立和优化了灰葡萄孢菌 Flipper 转座子 PCR 扩增体系。采用该体系及 Flipper 转座子引物扩增得到了1159 bp 的片段,通过比对发现,该片段与 Botryotinia fuckeliana 的 Flipper 转座因子转座酶基因相似性达99%,表明扩增得到的是预期目的片段。 Flipper 转座子扩增体系的建立,为深入研究我国葡萄灰霉病菌菌株的转座子类型及其与致病力、抗药性等因素之间的关系奠定了重要的基础。

  16. Enhancement of cell-specific transgene expression from a Tet-Off regulatory system using a transcriptional amplification strategy in the rat brain

    OpenAIRE

    Liu, Beihui; Wang, Shu; Brenner, Michael; Paton, Julian FR; Kasparov, Sergey

    2008-01-01

    Background The Tet-Off system uses a tetracycline-controlled transactivator protein (tTA) and a tetracycline-responsive promoter element (TRE) to regulate expression of a target gene. This system can be used to achieve regulatable transgene expression in specific cell types by employing a cell-specific promoter to drive tTA expression. Wide applications of this attractive approach are, however, hindered by relatively weak transcriptional activity of most cell-specific promoters. We report her...

  17. Tsunami Amplification due to Focusing

    Science.gov (United States)

    Moore, C. W.; Kanoglu, U.; Titov, V. V.; Aydin, B.; Spillane, M. C.; Synolakis, C. E.

    2012-12-01

    Tsunami runup measurements over the periphery of the Pacific Ocean after the devastating Great Japan tsunami of 11 March 2011 showed considerable variation in far-field and near-field impact. This variation of tsunami impact have been attributed to either directivity of the source or by local topographic effects. Directivity arguments alone, however, cannot explain the complexity of the radiated patterns in oceans with trenches and seamounts. Berry (2007, Proc. R. Soc. Lond. A 463, 3055-3071) discovered how such underwater features may concentrate tsunamis into cusped caustics and thus cause large local amplifications at specific focal points. Here, we examine focusing and local amplification, not by considering the effects of underwater diffractive lenses, but by considering the details of the dipole nature of the initial profile, and propose that certain regions of coastline are more at-risk, not simply because of directivity but because typical tsunami deformations create focal regions where abnormal tsunami wave height can be registered (Marchuk and Titov, 1989, Proc. IUGG/IOC International Tsunami Symposium, Novosibirsk, USSR). In this work, we present a new general analytical solution of the linear shallow-water wave equation for the propagation of a finite-crest-length source over a constant depth without any restriction on the initial profile. Unlike the analytical solution of Carrier and Yeh (2005, Comp. Mod. Eng. & Sci. 10(2), 113-121) which was restricted to initial conditions with Gaussian profiles and involved approximation, our solution is not only exact, but also general and allows the use of realistic initial waveform such as N-waves as defined by Tadepalli and Synolakis (1994, Proc. R. Soc. Lond. A 445, 99-112). We then verify our analytical solution for several typical wave profiles, both with the NOAA tsunami forecast model MOST (Titov and Synolakis, 1998, J. Waterw. Port Coast. Ocean Eng. 124(4), 157-171) which is validated and verified through

  18. DC-driven thermoelectric Peltier device for precise DNA amplification

    Science.gov (United States)

    Yamaguchi, Shigeo; Suzuki, Tadzunu; Inoue, Kazuhito; Azumi, Yoshitaka

    2015-05-01

    Using a DC-driven Peltier device, we fabricated a DNA amplification system [polymerase chain reaction (PCR) system] with the aim of increasing its speed and precision. The Peltier device had a well block sandwiched by Bi2Se0.37Te2.36 as an N-type thermoelectric material and Bi0.59Sb1.30Te3 as a P-type material. The well block was directly controlled by the electric current, leading to a high thermal response. Using the Peltier device with the well block, we performed thermal cycles of a PCR, and we demonstrated that our PCR system produces a smaller amount of nonspecific products for the genome DNA (gDNA) of Arabidopsis thaliana, leading to a more precise DNA amplification system.

  19. Multiscale image contrast amplification (MUSICA)

    Science.gov (United States)

    Vuylsteke, Pieter; Schoeters, Emile P.

    1994-05-01

    This article presents a novel approach to the problem of detail contrast enhancement, based on multiresolution representation of the original image. The image is decomposed into a weighted sum of smooth, localized, 2D basis functions at multiple scales. Each transform coefficient represents the amount of local detail at some specific scale and at a specific position in the image. Detail contrast is enhanced by non-linear amplification of the transform coefficients. An inverse transform is then applied to the modified coefficients. This yields a uniformly contrast- enhanced image without artefacts. The MUSICA-algorithm is being applied routinely to computed radiography images of chest, skull, spine, shoulder, pelvis, extremities, and abdomen examinations, with excellent acceptance. It is useful for a wide range of applications in the medical, graphical, and industrial area.

  20. Mechanisms of Metal-Induced Centrosome Amplification

    OpenAIRE

    Holmes, Amie L.; Wise, John Pierce

    2010-01-01

    Exposure to toxic and carcinogenic metals is widespread; however, their mechanisms of action remain largely unknown. One potential mechanism for metal-induced carcinogenicity and toxicity is centrosome amplification. Here, we review the mechanisms for metal-induced centrosome amplification, including arsenic, chromium, mercury and nano-titanium dioxide.

  1. Rapid and efficient identification of the mouse leptin receptor mutation (C57BL/KsJ-db/db) by tetra-primer amplification refractory mutation system-polymerase chain reaction (ARMS-PCR) analysis.

    Science.gov (United States)

    Jung, Harry; Nam, Hajin; Suh, Jun-Gyo

    2016-03-01

    The C57BLKS/J-Lepr(db) mouse has a point mutation in the leptin receptor gene and is one of the most useful animal model for non-insulin dependent diabetes mellitus in human. Since the homozygote of C57BLKS/J-Lepr(db) mouse is infertile, detection of point mutation in the leptin receptor gene is important for efficient maintaining strains as well as mass production of homozygotes. To develop a rapid and efficient genotyping method for C57BLKS/J-Lepr(db) mouse, the tetra-primer amplification-refractory mutation system polymerase chain reaction (ARMS-PCR) was used. The 407 and 199 bp PCR products were amplified from normal (+/+) mice; while the 407 and 268 bp PCR products were amplified from homozygotes (db/db) mice; and the 407, 268, and 199 bp PCR products were amplified from heterozygotes (db/+) mice. This result showed that the tetra-primer ARMS-PCR analysis by us is suitable to detect point mutation of the leptin receptor gene. Taken together, our method will dramatically reduce animal use for maintenance of strains as well as production of homozygote in the C57BLKS/J-Lepr(db) strains.

  2. Risk Perception and Social Amplification

    Energy Technology Data Exchange (ETDEWEB)

    Smith, R.E. [Environment Agency (United Kingdom)

    2001-07-01

    This paper seeks to consider social amplification as it applies to risk perception. Perceptions of the magnitude of a risk are conditioned by issues such as the degree of uncertainty in probability and consequences, the nature of the consequences and the relative weightings placed on probability and consequences. Risk perceptions are also influenced by factors such as confidence in the operator of an industrial process, trust in the regulator and the perceived fairness of regulatory decision-making. Different people may hold different views about these issues and there may also be difficulties in communication. The paper identifies and discusses self-reinforcing mechanisms, which will be labelled 'lock-in' here. They appear to apply in many situations where social amplification is observed. Historically, the term 'lock-in' has been applied mainly in the technological context but, in this paper, four types of lock-in are identified, namely scientific/technological, economic, social and institutional lock-in. One type of lock-in tends to lead to the next and all are buttressed by people's general acceptance of the familiar, fear of the unknown and resistance to change. The regulator seeks to make decisions which achieve the common good rather than supporting or perpetuating any set of vested interests. In this regard the locked-in positions of stakeholders, whether organisations, interest groups, or individual members of the public, are obstacles and challenges. Existing methods of consultation are unsatisfactory in terms of achieving a proper and productive level of dialogue with stakeholders.

  3. Detection and quantitative characterization of artificial extra peaks following polymerase chain reaction amplification of 14 short tandem repeat systems used in forensic investigations

    DEFF Research Database (Denmark)

    Meldgaard, Michael; Morling, N

    1997-01-01

    are analyzed. We have investigated the relative levels of formation of extra peaks in 14 STR marker systems. We found that not only the parameters of the PCR but also factors determining the stringency during the post-PCR and pre-electrophoresis handling of samples were of importance for the formation of extra...

  4. Generation And Measurement Of High Contrast Ultrashort Intense Laser Pulses

    CERN Document Server

    Konoplev, O A

    2000-01-01

    In this thesis, the generation and measurement of high contrast, intense, ultrashort pulses have been studied. Various factors affecting the contrast and pulse shape of ultrashort light pulses from a chirped pulse amplification (CPA) laser system are identified. The level of contrast resulting from influence of these factors is estimated. Methods for improving and controlling the pulse shape and increasing the contrast are discussed. Ultrahigh contrast, 1-ps pulses were generated from a CPA system with no temporal structure up to eleven orders of magnitude. This is eight orders of magnitude higher contrast than the original pulse. This contrast boost was achieved using two techniques. One is the optical pulse cleaning based on the nonlinear birefringence of the chirping fiber and applied to the pulses before amplification. The other is the fast saturable absorber. The fast saturable absorber was placed after amplification and compression of the pulse. The measurements of high-contrast, ultrashort pulse with h...

  5. The Effectiveness of Low-Frequency Amplification and Filtered-Speech Testing for Preschool Deaf Children. Final Report.

    Science.gov (United States)

    Asp, Carl W.

    During a 3-year period, 20 preschool deaf children were matched and given auditory training by the Verbo-tonal method using two different amplification systems (one which amplified from 200 to 5000 hertz and the other from 20 to 5000 hertz). There were three main goals: (1) to compare two different amplification systems to determine if the…

  6. Linking Arctic amplification and local feedbacks

    Science.gov (United States)

    Balcerak, Ernie

    2011-11-01

    Climate simulations show that as the Earth warms, the Arctic warms more than the average global warming. However, models differ on how much more the Arctic warms, and although scientists have proposed a variety of mechanisms to explain the Arctic warming amplification, there is no consensus on the main reasons for it. To shed light on this issue, Hwang et al. investigated the relationship between Arctic amplification and poleward energy transport and local Arctic feedbacks, such as changes in cloud cover or ice loss, across a group of models. The researchers noted that differences in atmospheric energy transport did not explain the ranges of polar amplification; rather, models with more amplification showed less energy transport into high latitudes. The authors found that decreasing energy transport is due to a coupled relationship between Arctic amplification and energy transport: Arctic amplification reduces the equator-to-pole temperature gradient, which strongly decreases energy transport. They suggest that this coupled relationship should be taken into account in studies of Arctic amplification. (Geophysical Research Letters, doi:10.1029/2011GL048546, 2011)

  7. Spatial beam shaping using a micro-structured optical fiber and all-fiber laser amplification system for large-scale laser facilities seeding

    International Nuclear Information System (INIS)

    Spatial beam shaping is an important topic for the lasers applications. For various industrial areas (marking, drilling, laser-matter interaction, high-power laser seeding...) the optical beam has to be flattened. Currently, the state of the art of the beam shaping: 'free-space' solutions or highly multimode fibers, are not fully suitable. The first ones are very sensitive to any perturbations and the maintenance is challenging, the second ones cannot deliver a coherent beam. For this reason, we present in this manuscript a micro-structured optical single-mode fiber delivering a spatially flattened beam. This 'Top-Hat' fiber can shape any beam in a spatially coherent beam what is a progress with respect to the highly multimode fibers used in the state of the art. The optical fibers are easy to use and very robust, what is a strong benefit with respect to the 'free-space' solutions. Thanks to this fiber, we could realize an all-fiber multi-stage laser chain to amplify a 10 ns pulse to 100 μJ. Moreover the temporal, spectral and spatial properties were preserved. We adapted this 'Top-Hat' fiber to this multi-stage laser chain, we proved the capability and the interest of this fiber for the spatial beam shaping of the laser beams in highly performing and robust laser systems. (author)

  8. The Nexawatt: A Strategy for Exawatt Peak Power Lasers Based on NIF and NIF-like Beam Lines

    Science.gov (United States)

    Barty, C. P. J.

    2016-05-01

    An exawatt-scale, short-pulse amplification architecture based upon a novel pulse compressor arrangement and amplification of long-duration chirped beam pulses is described. This architecture is capable of extracting the full, stored energy of a NIF or NIF-like beam line and in doing so produce from one beam line a near-diffraction-limited, laser pulse whose peak power would exceed 0.2 EW. The architecture is well suited to either low-f-number focusing or to multi-beam, dipole focusing concepts that in principle enable focused intensities in the range of 1026 W/cm2 or 5 orders of magnitude beyond that possible from present PW systems based on chirped pulse amplification.

  9. A PCR amplification method without DNA extraction.

    Science.gov (United States)

    Li, Hongwei; Xu, Haiyue; Zhao, Chunjiang; Sulaiman, Yiming; Wu, Changxin

    2011-02-01

    To develop a simple and inexpensive method for direct PCR amplification of animal DNA from tissues, we optimized different components and their concentration in lysis buffer systems. Finally, we acquired the optimized buffer system composed of 10 mmol tris(hydroxymethyl)aminomethane (Tris)-Cl (pH 8.0), 2 mmol ethylene diamine tetraacetic (EDTA) (pH 8.0), 0.2 mol NaCl and 200 μg/mL Proteinase K. Interestingly, the optimized buffer is also very effective when working with common human sample types, including blood, buccal cells and hair. The direct PCR method requires fewer reagents (Tris-Cl, EDTA, Protease K and NaCl) and less incubation time (only 35 min). The cost of treating every sample is less than $0.02, and all steps can be completed on a thermal cycler in a 96-well format. So, the proposed method will significantly improve high-throughput PCR-based molecular assays in animal systems and in common human sample types.

  10. Drastic disorded-induced reduction of signal amplification in scale-free networks

    CERN Document Server

    Chacón, Ricardo

    2014-01-01

    Understanding information transmission across a network is a fundamental task for controlling and manipulating both biological and man-made information processing systems. Here, we show how topological resonant-like amplification effects in scale-free networks of signaling devices are drastically reduced when phase disorder in the external signals is considered. This is demonstrated theoretically by means of a star-like network of overdamped bistable systems, and confirmed numerically by simulations of scale-free networks of such systems. The taming effect of the phase disorder is found to be sensitive to the amplification's strength, while the topology-induced amplification mechanism is robust against this kind of quenched disorder in the sense that it does not significantly change the values of the coupling strength where amplification is maximum in its absence.

  11. Quantum Amplitude Amplification and Estimation

    CERN Document Server

    Brassard, G; Mosca, M; Tapp, A; Brassard, Gilles; Hoyer, Peter; Mosca, Michele; Tapp, Alain

    2000-01-01

    Consider a Boolean function $\\chi: X \\to \\{0,1\\}$ that partitions set $X$ between its good and bad elements, where $x$ is good if $\\chi(x)=1$ and bad otherwise. Consider also a quantum algorithm $\\mathcal A$ such that $A \\ket{0} = \\sum_{x\\in X} \\alpha_x \\ket{x}$ is a quantum superposition of the elements of $X$, and let $a$ denote the probability that a good element is produced if $A \\ket{0}$ is measured. If we repeat the process of running $A$, measuring the output, and using $\\chi$ to check the validity of the result, we shall expect to repeat $1/a$ times on the average before a solution is found. *Amplitude amplification* is a process that allows to find a good $x$ after an expected number of applications of $A$ and its inverse which is proportional to $1/\\sqrt{a}$, assuming algorithm $A$ makes no measurements. This is a generalization of Grover's searching algorithm in which $A$ was restricted to producing an equal superposition of all members of $X$ and we had a promise that a single $x$ existed such tha...

  12. Narrow band amplification of light carrying orbital angular momentum

    CERN Document Server

    Borba, G C; Pruvost, L; Felinto, D; Tabosa, J W R

    2016-01-01

    We report on the amplification of an optical vortex beam carrying orbital angular momentum via induced narrow Raman gain in an ensemble of cold cesium atoms. A 20\\% single-pass Raman gain of a weak vortex signal field is observed with a spectral width of order of 1 MHz, much smaller than the natural width, demonstrating that the amplification process preserves the phase structure of the vortex beam. The gain is observed in the degenerated two-level system associated with the hyperfine transition $6S_{1/2}(F=3)\\leftrightarrow 6P_{3/2}(F^{\\prime}=2)$ of cesium. Our experimental observations are explained with a simple theoretical model based on a three-level $\\Lambda$ system interacting coherently with the weak Laguerre-Gauss field and a strong coupling field, including an incoherent pumping rate between the two degenerate ground-states.

  13. Invertible Clipping for Increasing the Power Efficiency of OFDM Amplification

    OpenAIRE

    Ragusa, Salvatore; Palicot, Jacques; Louët, Yves; Lereau, Christian

    2006-01-01

    International audience Large fluctuations of OFDM signal amplitude represent an important problem for power amplification in mobile communication systems. In this paper, we propose a new Peak-to-Average Power Ratio (PAPR) reduction method based on the well known clipping and filtering one. Called "invertible clipping", it is performed thanks to a "soft clipping function". Since this soft clipping can be inverted in reception side, degradations are compensated. The derived method benefits f...

  14. Can Anomalous Amplification be Attained without Postselection?

    Science.gov (United States)

    Martínez-Rincón, Julián; Liu, Wei-Tao; Viza, Gerardo I.; Howell, John C.

    2016-03-01

    We present a parameter estimation technique based on performing joint measurements of a weak interaction away from the weak-value-amplification approximation. Two detectors are used to collect full statistics of the correlations between two weakly entangled degrees of freedom. Without discarding of data, the protocol resembles the anomalous amplification of an imaginary-weak-value-like response. The amplification is induced in the difference signal of both detectors allowing robustness to different sources of technical noise, and offering in addition the advantages of balanced signals for precision metrology. All of the Fisher information about the parameter of interest is collected. A tunable phase controls the strength of the amplification response. We experimentally demonstrate the proposed technique by measuring polarization rotations in a linearly polarized laser pulse. We show that in the presence of technical noise the effective sensitivity and precision of a split detector is increased when compared to a conventional continuous-wave balanced detection technique.

  15. Can Anomalous Amplification be Attained Without Postselection?

    CERN Document Server

    Martínez-Rincón, Julián; Viza, Gerardo I; Howell, John C

    2015-01-01

    We present a parameter estimation technique based on performing joint measurements of a weak interaction away from the weak-value-amplification approximation. Two detectors are used to collect full statistics of the correlations between two weakly entangled degrees of freedom. Without the need of postselection, the protocol resembles the anomalous amplification of an imaginary-weak-value-like response. The amplification is induced in the difference signal of both detectors allowing robustness to different sources of technical noise, and offering in addition the advantages of balanced signals for precision metrology. All of the Fisher information about the parameter of interest is collected, and a phase controls the amplification response. We experimentally demonstrate the proposed technique by measuring polarization rotations in a linearly polarized laser pulse. The effective sensitivity and precision of a split detector is increased when compared to a conventional continuous-wave balanced detection technique...

  16. Rolling circle amplification of metazoan mitochondrialgenomes

    Energy Technology Data Exchange (ETDEWEB)

    Simison, W. Brian; Lindberg, D.R.; Boore, J.L.

    2005-07-31

    Here we report the successful use of rolling circle amplification (RCA) for the amplification of complete metazoan mt genomes to make a product that is amenable to high-throughput genome sequencing techniques. The benefits of RCA over PCR are many and with further development and refinement of RCA, the sequencing of organellar genomics will require far less time and effort than current long PCR approaches.

  17. Towards a “Sample-In, Answer-Out” Point-of-Care Platform for Nucleic Acid Extraction and Amplification: Using an HPV E6/E7 mRNA Model System

    Directory of Open Access Journals (Sweden)

    Anja Gulliksen

    2012-01-01

    Full Text Available The paper presents the development of a “proof-of-principle” hands-free and self-contained diagnostic platform for detection of human papillomavirus (HPV E6/E7 mRNA in clinical specimens. The automated platform performs chip-based sample preconcentration, nucleic acid extraction, amplification, and real-time fluorescent detection with minimal user interfacing. It consists of two modular prototypes, one for sample preparation and one for amplification and detection; however, a common interface is available to facilitate later integration into one single module. Nucleic acid extracts (n=28 from cervical cytology specimens extracted on the sample preparation chip were tested using the PreTect HPV-Proofer and achieved an overall detection rate for HPV across all dilutions of 50%–85.7%. A subset of 6 clinical samples extracted on the sample preparation chip module was chosen for complete validation on the NASBA chip module. For 4 of the samples, a 100% amplification for HPV 16 or 33 was obtained at the 1 : 10 dilution for microfluidic channels that filled correctly. The modules of a “sample-in, answer-out” diagnostic platform have been demonstrated from clinical sample input through sample preparation, amplification and final detection.

  18. Apolipoprotein E genotyping by multiplex amplification refractory mutation system PCR with optimized conditions%优化的多重扩增阻滞突变系统-PCR对载脂蛋白E基因的简易分型

    Institute of Scientific and Technical Information of China (English)

    刘静; 刘建伟; 叶玲

    2011-01-01

    Objective To set up a simple method for apolipoprotein E (ApoE) genotyping by modifying the conditions of multiplex amplification refractory mutation system PCR (multi-ARMS-PCR). Methods Based on the principle of multi-ARMS-PCR and considering the faults existed in some published papers, new primers were designed to improve PCR conditions. DNA genome of peripheral white blood cells was used as the template. Four allele-specific oligonucleotide upstream primers, one common downstream primer and a pair of internal positive control primers were constructed. Multi-ARMS-PCR were performed with combination of different primers in 2 reaction tubes synchronously. Amplified multiplex products were electrophoresed on agarose gels containing ethidium bromide. Six ApoE genotypes were distinguished by the band sizes. Results Using the new primers,amplification efficiency and specificity were significantly increased and the misclassification was diminished due to removing the interference of non-specific bands. Conclusion The optimized multi-ARMS-PCR is an easy, time-saving, efficient and economical method for determination of ApoE genotypes applied in a minimally equipped laboratory.%目的 通过改进和优化多重扩增阻滞突变系统-PCR(multi-ARMS-PCR)条件,建立载脂蛋白E(ApoE)基因的简易分型方法.方法 基于multi-ARMS-PCR的原理和特点,针对文献报道方法中存在的缺陷和错误,重新设计或改进引物.以外周血白细胞基因组DNA为模板,应用4个等位基因特异性寡核酸上游引物、1个通用下游引物和一对内参引物,分A,B两个管同步进行多重PCR反应.PCR扩增产物经过琼脂糖凝胶电泳分离-EB染色,根据电泳带型的差异,实现对ApoE 6种基因型的判定.结果 新引物显著提高了扩增效率和反应特异性,排除了非特异条带的干扰,减少了ApoE基因分型的错判.结论 采用优化后的multi-ARMS-PCR方法对ApoE基因型进行鉴定,具有操作简便、时间短

  19. Multiple displacement amplification of the DNA from single flow–sorted plant chromosome

    OpenAIRE

    Cápal, P. (Petr); Blavet, N; Vrána, J; Kubaláková, M; Doležel, J. (Jaroslav)

    2015-01-01

    A protocol is described for production of micrograms of DNA from single copies of flow-sorted plant chromosomes. Of 183 single copies of wheat chromosome 3B, 118 (64%) were successfully amplified. Sequencing DNA amplification products using an Illumina HiSeq 2000 system to 10× coverage and merging sequences from three separate amplifications resulted in 60% coverage of the chromosome 3B reference, entirely covering 30% of its genes. The merged sequences permitted de novo assembly of 19% of ch...

  20. Noiseless phase quadrature amplification via an electro-optic feed-forward technique

    CERN Document Server

    Buchler, B C; Ralph, T C; Buchler, Ben C.; Huntington, Elanor H.; Ralph, Timothy C.

    1999-01-01

    Theoretical results are presented which show that noiseless phase quadrature amplification is possible, and limited experimentally only by the efficiency of the phase detection system. Experimental results obtained using a Nd:YAG laser show a signal gain of 10dB and a signal transfer ratio of T_s=0.9. This result easily exceeds the standard quantum limit for signal transfer. The results also explicitly demonstrate the phase sensitive nature of the amplification process.

  1. Self-organization effects and light amplification of collective atomic recoil motion in a harmonic trap

    OpenAIRE

    Zhang, L.; Yang, G. J.; Xia, L. X.

    2005-01-01

    Self-organization effects related to light amplification in the collective atomic recoil laser system with the driven atoms confined in a harmonic trap are investigated further. In the dispersive parametric region, our study reveals that the spontaneously formed structures in the phase space contributes an important role to the light amplification of the probe field under the atomic motion being modified by the trap.

  2. Metformin inhibits age-related centrosome amplification in Drosophila midgut stem cells through AKT/TOR pathway.

    Science.gov (United States)

    Na, Hyun-Jin; Park, Joung-Sun; Pyo, Jung-Hoon; Jeon, Ho-Jun; Kim, Young-Shin; Arking, Robert; Yoo, Mi-Ae

    2015-07-01

    We delineated the mechanism regulating the inhibition of centrosome amplification by metformin in Drosophila intestinal stem cells (ISCs). Age-related changes in tissue-resident stem cells may be closely associated with tissue aging and age-related diseases, such as cancer. Centrosome amplification is a hallmark of cancers. Our recent work showed that Drosophila ISCs are an excellent model for stem cell studies evaluating age-related increase in centrosome amplification. Here, we showed that metformin, a recognized anti-cancer drug, inhibits age- and oxidative stress-induced centrosome amplification in ISCs. Furthermore, we revealed that this effect is mediated via down-regulation of AKT/target of rapamycin (TOR) activity, suggesting that metformin prevents centrosome amplification by inhibiting the TOR signaling pathway. Additionally, AKT/TOR signaling hyperactivation and metformin treatment indicated a strong correlation between DNA damage accumulation and centrosome amplification in ISCs, suggesting that DNA damage might mediate centrosome amplification. Our study reveals the beneficial and protective effects of metformin on centrosome amplification via AKT/TOR signaling modulation. We identified a new target for the inhibition of age- and oxidative stress-induced centrosome amplification. We propose that the Drosophila ISCs may be an excellent model system for in vivo studies evaluating the effects of anti-cancer drugs on tissue-resident stem cell aging.

  3. Amplified RNA degradation in T7-amplification methods results in biased microarray hybridizations

    Directory of Open Access Journals (Sweden)

    Ivell Richard

    2003-11-01

    Full Text Available Abstract Background The amplification of RNA with the T7-System is a widely used technique for obtaining increased amounts of RNA starting from limited material. The amplified RNA (aRNA can subsequently be used for microarray hybridizations, warranting sufficient signal for image analysis. We describe here an amplification-time dependent degradation of aRNA in prolonged standard T7 amplification protocols, that results in lower average size aRNA and decreased yields. Results A time-dependent degradation of amplified RNA (aRNA could be observed when using the classical "Eberwine" T7-Amplification method. When the amplification was conducted for more than 4 hours, the resulting aRNA showed a significantly smaller size distribution on gel electrophoresis and a concomitant reduction of aRNA yield. The degradation of aRNA could be correlated to the presence of the T7 RNA Polymerase in the amplification cocktail. The aRNA degradation resulted in a strong bias in microarray hybridizations with a high coefficient of variation and a significant reduction of signals of certain transcripts, that seem to be susceptible to this RNA degrading activity. The time-dependent degradation of these transcripts was verified by a real-time PCR approach. Conclusions It is important to perform amplifications not longer than 4 hours as there is a characteristic 'quality vs. yield' situation for longer amplification times. When conducting microarray hybridizations it is important not to compare results obtained with aRNA from different amplification times.

  4. Amplification, Decoherence, and the Acquisition of Information by Spin Environments

    Science.gov (United States)

    Zwolak, Michael; Riedel, C. Jess; Zurek, Wojciech H.

    2016-05-01

    Quantum Darwinism recognizes the role of the environment as a communication channel: Decoherence can selectively amplify information about the pointer states of a system of interest (preventing access to complementary information about their superpositions) and can make records of this information accessible to many observers. This redundancy explains the emergence of objective, classical reality in our quantum Universe. Here, we demonstrate that the amplification of information in realistic spin environments can be quantified by the quantum Chernoff information, which characterizes the distinguishability of partial records in individual environment subsystems. We show that, except for a set of initial states of measure zero, the environment always acquires redundant information. Moreover, the Chernoff information captures the rich behavior of amplification in both finite and infinite spin environments, from quadratic growth of the redundancy to oscillatory behavior. These results will considerably simplify experimental testing of quantum Darwinism, e.g., using nitrogen vacancies in diamond.

  5. Weak value amplification is suboptimal for estimation and detection.

    Science.gov (United States)

    Ferrie, Christopher; Combes, Joshua

    2014-01-31

    We show by using statistically rigorous arguments that the technique of weak value amplification does not perform better than standard statistical techniques for the tasks of single parameter estimation and signal detection. Specifically, we prove that postselection, a necessary ingredient for weak value amplification, decreases estimation accuracy and, moreover, arranging for anomalously large weak values is a suboptimal strategy. In doing so, we explicitly provide the optimal estimator, which in turn allows us to identify the optimal experimental arrangement to be the one in which all outcomes have equal weak values (all as small as possible) and the initial state of the meter is the maximal eigenvalue of the square of the system observable. Finally, we give precise quantitative conditions for when weak measurement (measurements without postselection or anomalously large weak values) can mitigate the effect of uncharacterized technical noise in estimation.

  6. Heat induces gene amplification in cancer cells

    Energy Technology Data Exchange (ETDEWEB)

    Yan, Bin, E-mail: yanbin@mercyhealth.com [Department of Radiation Oncology, University of Mississippi Medical Center, Jackson, MS 39213 (United States); Mercy Cancer Center, Mercy Medical Center-North Iowa, Mason City, IA 50401 (United States); Ouyang, Ruoyun [Department of Respiratory Medicine, The Second Xiangya Hospital, Xinagya School of Medicine, Central South University, Changsha 410011 (China); Huang, Chenghui [Department of Radiation Oncology, University of Mississippi Medical Center, Jackson, MS 39213 (United States); Department of Oncology, The Third Xiangya Hospital, Xinagya School of Medicine, Central South University, Changsha 410013 (China); Liu, Franklin [Department of Radiation Oncology, Duke University Medical Center, Durham, NC 27710 (United States); Neill, Daniel [Department of Radiation Oncology, University of Mississippi Medical Center, Jackson, MS 39213 (United States); Li, Chuanyuan [Dermatology, Duke University Medical Center, Durham, NC 27710 (United States); Dewhirst, Mark [Department of Radiation Oncology, Duke University Medical Center, Durham, NC 27710 (United States)

    2012-10-26

    Highlights: Black-Right-Pointing-Pointer This study discovered that heat exposure (hyperthermia) results in gene amplification in cancer cells. Black-Right-Pointing-Pointer Hyperthermia induces DNA double strand breaks. Black-Right-Pointing-Pointer DNA double strand breaks are considered to be required for the initiation of gene amplification. Black-Right-Pointing-Pointer The underlying mechanism of heat-induced gene amplification is generation of DNA double strand breaks. -- Abstract: Background: Hyperthermia plays an important role in cancer therapy. However, as with radiation, it can cause DNA damage and therefore genetic instability. We studied whether hyperthermia can induce gene amplification in cancer cells and explored potential underlying molecular mechanisms. Materials and methods: (1) Hyperthermia: HCT116 colon cancer cells received water-submerged heating treatment at 42 or 44 Degree-Sign C for 30 min; (2) gene amplification assay using N-(phosphoacetyl)-L-aspartate (PALA) selection of cabamyl-P-synthetase, aspartate transcarbarmylase, dihydro-orotase (cad) gene amplified cells; (3) southern blotting for confirmation of increased cad gene copies in PALA-resistant cells; (4) {gamma}H2AX immunostaining to detect {gamma}H2AX foci as an indication for DNA double strand breaks. Results: (1) Heat exposure at 42 or 44 Degree-Sign C for 30 min induces gene amplification. The frequency of cad gene amplification increased by 2.8 and 6.5 folds respectively; (2) heat exposure at both 42 and 44 Degree-Sign C for 30 min induces DNA double strand breaks in HCT116 cells as shown by {gamma}H2AX immunostaining. Conclusion: This study shows that heat exposure can induce gene amplification in cancer cells, likely through the generation of DNA double strand breaks, which are believed to be required for the initiation of gene amplification. This process may be promoted by heat when cellular proteins that are responsible for checkpoints, DNA replication, DNA repair and

  7. Heat induces gene amplification in cancer cells

    International Nuclear Information System (INIS)

    Highlights: ► This study discovered that heat exposure (hyperthermia) results in gene amplification in cancer cells. ► Hyperthermia induces DNA double strand breaks. ► DNA double strand breaks are considered to be required for the initiation of gene amplification. ► The underlying mechanism of heat-induced gene amplification is generation of DNA double strand breaks. -- Abstract: Background: Hyperthermia plays an important role in cancer therapy. However, as with radiation, it can cause DNA damage and therefore genetic instability. We studied whether hyperthermia can induce gene amplification in cancer cells and explored potential underlying molecular mechanisms. Materials and methods: (1) Hyperthermia: HCT116 colon cancer cells received water-submerged heating treatment at 42 or 44 °C for 30 min; (2) gene amplification assay using N-(phosphoacetyl)-L-aspartate (PALA) selection of cabamyl-P-synthetase, aspartate transcarbarmylase, dihydro-orotase (cad) gene amplified cells; (3) southern blotting for confirmation of increased cad gene copies in PALA-resistant cells; (4) γH2AX immunostaining to detect γH2AX foci as an indication for DNA double strand breaks. Results: (1) Heat exposure at 42 or 44 °C for 30 min induces gene amplification. The frequency of cad gene amplification increased by 2.8 and 6.5 folds respectively; (2) heat exposure at both 42 and 44 °C for 30 min induces DNA double strand breaks in HCT116 cells as shown by γH2AX immunostaining. Conclusion: This study shows that heat exposure can induce gene amplification in cancer cells, likely through the generation of DNA double strand breaks, which are believed to be required for the initiation of gene amplification. This process may be promoted by heat when cellular proteins that are responsible for checkpoints, DNA replication, DNA repair and telomere functions are denatured. To our knowledge, this is the first study to provide direct evidence of hyperthermia induced gene amplification.

  8. Thermal amplification of field-correlation harvesting

    CERN Document Server

    Brown, Eric G

    2013-01-01

    We study the harvesting of quantum and classical correlations from a hot scalar field in a periodic cavity by a pair of spatially separated oscillator-detectors. Specifically, we utilize non-perturbative and exact (non-numerical) techniques to solve for the evolution of the detectors-field system and then we examine how the entanglement, Gaussian quantum discord, and mutual information obtained by the detectors change with the temperature of the field. While (as expected) the harvested entanglement rapidly decays to zero as temperature is increased, we find remarkably that both the mutual information and the discord can actually be increased by multiple orders of magnitude via increasing the temperature. We go on to explain this phenomenon by taking advantage of the translational invariance of the field and use this to make accurate predictions of the behavior of thermal amplification; by this we also introduce a new perspective on field-correlation harvesting that we feel is worthy of consideration in its ow...

  9. One New Method of Nucleic Acid Amplification-Loop-mediated Isothermal Amplification of DNA

    Institute of Scientific and Technical Information of China (English)

    Xue-en FANG; Jian LI; Qin CHEN

    2008-01-01

    Loop-mediated isothermal amplification (LAMP) is a novel nucleic acid amplification method, which amplifies DNA with high specificity, sensitivity, rapidity and efficiency under isothermal conditions using a set of four specially designed primers and a Bst DNA polymerase with strand displacement activity. The basic principle, characteristics, development of LAMP and its applications are summarized in this article.

  10. Acoustic Self-Calibrating System for Indoor Smart Phone Tracking

    Directory of Open Access Journals (Sweden)

    Alexander Ens

    2015-01-01

    Full Text Available This paper presents an acoustic indoor localization system for commercial smart phones that emit high pitched acoustic signals beyond the audible range. The acoustic signals with an identifier code modulated on the signal are detected by self-built receivers which are placed at the ceiling or on walls in a room. The receivers are connected in a Wi-Fi network, such that they synchronize their clocks and exchange the time differences of arrival (TDoA of the received chirps. The location of the smart phone is calculated by TDoA multilateration. The precise time measuring of sound enables high precision localization in indoor areas. Our approach enables applications that require high accuracy, such as finding products in a supermarket or guiding blind people through complicated buildings. We have evaluated our system in real-world experiments using different algorithms for calibration-free localization and different types of sound signals. The adaptive GOGO-CFAR threshold enables a detection of 48% of the chirp pulses even at a distance of 30 m. In addition, we have compared the trajectory of a pedestrian carrying a smart phone to reference positions of an optic system. Consequently, the localization error is observed to be less than 30 cm.

  11. EGFR Amplification and Glioblastoma Stem-Like Cells

    Directory of Open Access Journals (Sweden)

    Katrin Liffers

    2015-01-01

    Full Text Available Glioblastoma (GBM, the most common malignant brain tumor in adults, contains a subpopulation of cells with a stem-like phenotype (GS-cells. GS-cells can be maintained in vitro using serum-free medium supplemented with epidermal growth factor, basic fibroblast growth factor-2, and heparin. However, this method does not conserve amplification of the Epidermal Growth Factor Receptor (EGFR gene, which is present in over 50% of all newly diagnosed GBM cases. GS-cells with retained EGFR amplification could overcome the limitations of current in vitro model systems and contribute significantly to preclinical research on EGFR-targeted therapy. This review recapitulates recent methodological approaches to expand stem-like cells from GBM with different EGFR status in order to maintain EGFR-dependent intratumoral heterogeneity in vitro. Further, it will summarize the current knowledge about the impact of EGFR amplification and overexpression on the stem-like phenotype of GBM-derived GS-cells and different approaches to target the EGFR-dependent GS-cell compartment of GBM.

  12. Strongly aligned gas-phase molecules at Free-Electron Lasers

    CERN Document Server

    Kierspel, Thomas; Mullins, Terry; Robinson, Joseph; Aquila, Andy; Barty, Anton; Bean, Richard; Boll, Rebecca; Boutet, Sébastien; Bucksbaum, Philip; Chapman, Henry N; Christensen, Lauge; Fry, Alan; Hunter, Mark; Koglin, Jason E; Liang, Mengning; Mariani, Valerio; Morgan, Andrew; Natan, Adi; Petrovic, Vladimir; Rolles, Daniel; Rudenko, Artem; Schnorr, Kirsten; Stapelfeldt, Henrik; Stern, Stephan; Thøgersen, Jan; Yoon, Chun Hong; Wang, Fenglin; Trippel, Sebastian; Küpper, Jochen

    2015-01-01

    We demonstrate a novel experimental implementation to strongly align molecules at full repetition rates of free-electron lasers. We utilized the available in-house laser system at the coherent x-ray imaging beamline at the Linac Coherent Light Source. Chirped laser pulses, i. e., the direct output from the regenerative amplifier of the Ti:Sa chirped pulse amplification laser system, were used to strongly align 2,5-diiodothiophene molecules in a molecular beam. The alignment laser pulses had pulse energies of a few mJ and a pulse duration of 94 ps. A degree of alignment of $\\left$ = 0.85 was measured, limited by the intrinsic temperature of the molecular beam rather than by the available laser system. With the general availability of synchronized chirped-pulse-amplified near-infrared laser systems at short-wavelength laser facilities, our approach allows for the universal preparation of molecules tightly fixed in space for experiments with x-ray pulses.

  13. Time varying arctic climate change amplification

    Energy Technology Data Exchange (ETDEWEB)

    Chylek, Petr [Los Alamos National Laboratory; Dubey, Manvendra K [Los Alamos National Laboratory; Lesins, Glen [DALLHOUSIE U; Wang, Muyin [NOAA/JISAO

    2009-01-01

    During the past 130 years the global mean surface air temperature has risen by about 0.75 K. Due to feedbacks -- including the snow/ice albedo feedback -- the warming in the Arctic is expected to proceed at a faster rate than the global average. Climate model simulations suggest that this Arctic amplification produces warming that is two to three times larger than the global mean. Understanding the Arctic amplification is essential for projections of future Arctic climate including sea ice extent and melting of the Greenland ice sheet. We use the temperature records from the Arctic stations to show that (a) the Arctic amplification is larger at latitudes above 700 N compared to those within 64-70oN belt, and that, surprisingly; (b) the ratio of the Arctic to global rate of temperature change is not constant but varies on the decadal timescale. This time dependence will affect future projections of climate changes in the Arctic.

  14. ESTIMATION OF AMPLIFICATION FACTOR IN EARTHQUAKE ENGINEERING

    Directory of Open Access Journals (Sweden)

    Nazarov Yuriy Pavlovich

    2015-03-01

    Full Text Available The authors are the developers of Odyssey Software (Eurosoft Co. for the analysis of seismological data and computing of seismic loads and their parameters. While communicating with the users of the software, the authors have revealed some uncertainty about both understanding of the term "amplification factor (AF" and calculation of the amplification factor using various methods. In this article, a simple example shows that the determination of the amplification factor as the ratio of the acceleration’s spectrum to the maximal acceleration is derived from the classical definition of AF in the form of the ratio of maximal dynamic displacement to the displacement by the action of static load. Deterministic and probabilistic ap-proaches for the calculating of the AF were discussed. There was an example of AFs calculation and their envelopes for translational and rotational components of seismic impact by using Odyssey Software.

  15. Amplification, Redundancy, and Quantum Chernoff Information

    Science.gov (United States)

    Zwolak, Michael; Riedel, C. Jess; Zurek, Wojciech H.

    2014-04-01

    Amplification was regarded, since the early days of quantum theory, as a mysterious ingredient that endows quantum microstates with macroscopic consequences, key to the "collapse of the wave packet," and a way to avoid embarrassing problems exemplified by Schrödinger's cat. Such a bridge between the quantum microworld and the classical world of our experience was postulated ad hoc in the Copenhagen interpretation. Quantum Darwinism views amplification as replication, in many copies, of the information about quantum states. We show that such amplification is a natural consequence of a broad class of models of decoherence, including the photon environment we use to obtain most of our information. This leads to objective reality via the presence of robust and widely accessible records of selected quantum states. The resulting redundancy (the number of copies deposited in the environment) follows from the quantum Chernoff information that quantifies the information transmitted by a typical elementary subsystem of the environment.

  16. On Arbitrary Phases in Quantum Amplitude Amplification

    CERN Document Server

    Hoyer, P

    2000-01-01

    We consider the use of arbitrary phases in quantum amplitude amplification which is a generalization of quantum searching. We prove that the phase condition in amplitude amplification is given by $\\tan(\\phi/2)=\\tan(\\phi/2)(1-2a)$, where $\\phi$ and $\\phi$ are the phases used and where $a$ is the success probability of the given algorithm. Thus the choice of phases depends nontrivially and nonlinearly on the success probability. Utilizing this condition, we give methods for constructing quantum algorithms that succeed with certainty and for implementing arbitrary rotations. We also conclude that phase errors of order up to $\\frac{1}{\\sqrt{a}}$ can be tolerated in amplitude amplification.

  17. Slow light propagation in an atomic vapour under conditions of amplification without inversion

    International Nuclear Information System (INIS)

    We report experimental results on slowing a light pulse in a system for amplification without inversion (AWI). We were able to control a subluminal group velocity continuously from Vg = c/2850 to c/7260 by just changing an incoherent pumping beam power from 0 to 12 mW in the AWI system. And several advantages, such as the controllable delay time and the pulse amplification, for slowing of the light in the AWI system compared to in an electromagnetically induced transparency system were found

  18. Continuous phase amplification with a Sagnac interferometer

    CERN Document Server

    Starling, David J; Williams, Nathan S; Jordan, Andrew N; Howell, John C

    2009-01-01

    We describe a weak value inspired phase amplification technique in a Sagnac interferometer. We monitor the relative phase between two paths of a slightly misaligned interferometer by measuring the average position of a split-Gaussian mode in the dark port. Although we monitor only the dark port, we show that the signal varies linearly with phase and that we can obtain similar sensitivity to balanced homodyne detection. We derive the source of the amplification both with classical wave optics and as an inverse weak value.

  19. Parametric Amplification For Detecting Weak Optical Signals

    Science.gov (United States)

    Hemmati, Hamid; Chen, Chien; Chakravarthi, Prakash

    1996-01-01

    Optical-communication receivers of proposed type implement high-sensitivity scheme of optical parametric amplification followed by direct detection for reception of extremely weak signals. Incorporates both optical parametric amplification and direct detection into optimized design enhancing effective signal-to-noise ratios during reception in photon-starved (photon-counting) regime. Eliminates need for complexity of heterodyne detection scheme and partly overcomes limitations imposed on older direct-detection schemes by noise generated in receivers and by limits on quantum efficiencies of photodetectors.

  20. A dual amplification fluorescent strategy for sensitive detection of DNA methyltransferase activity based on strand displacement amplification and DNAzyme amplification.

    Science.gov (United States)

    Cui, Wanling; Wang, Lei; Jiang, Wei

    2016-03-15

    DNA methyltransferase (MTase) plays a critical role in many biological processes and has been regarded as a predictive cancer biomarker and a therapeutic target in cancer treatment. Sensitive detection of DNA MTase activity is essential for early cancer diagnosis and therapeutics. Here, we developed a dual amplification fluorescent strategy for sensitive detection of DNA MTase activity based on strand displacement amplification (SDA) and DNAzyme amplification. A trifunctional double-stranded DNA (dsDNA) probe was designed including a methylation site for DNA MTase recognition, a complementary sequence of 8-17 DNAzyme for synthesizing DNAzyme, and a nicking site for nicking enzyme cleavage. Firstly, the trifunctional dsDNA probe was methylated by DNA MTase to form the methylated dsDNA. Subsequently, HpaII restriction endonuclease specifically cleaved the residue of unmethylated dsDNA. Next, under the action of polymerase and nicking enzyme, the methylared dsDNA initiated SDA, releasing numbers of 8-17 DNAzymes. Finally, the released 8-17 DNAzymes triggered DNAzyme amplification reaction to induce a significant fluorescence enhancement. This strategy could detect DNA MTase activity as low as 0.0082U/mL. Additionally, the strategy was successfully applied for evaluating the inhibitions of DNA MTase using two anticancer drugs, 5-azacytidine and 5-aza-2'-deoxycytidine. The results indicate the proposed strategy has a potential application in early cancer diagnosis and therapeutics.

  1. Resonant nonstationary amplification of polychromatic laser pulses and conical emission in an optically dense ensemble of neon metastable atoms

    CERN Document Server

    Bagayev, S N; Mekhov, I B; Moroshkin, P V; Chekhonin, I A; Davliatchine, E M; Kindel, E

    2003-01-01

    Experimental and numerical investigation of single beam and pump-probe interaction with a resonantly absorbing dense extended medium under strong and weak field-matter coupling is presented. Significant probe beam amplification and conical emission were observed. Under relatively weak pumping and high medium density, when the condition of strong coupling between field and resonant matter is fulfilled, the probe amplification spectrum has a form of spectral doublet. Stronger pumping leads to the appearance of a single peak of the probe beam amplification at the transition frequency. The greater probe intensity results in an asymmetrical transmission spectrum with amplification at the blue wing of the absorption line and attenuation at the red one. Under high medium density, a broad band of amplification appears. Theoretical model is based on the solution of the Maxwell-Bloch equations for a two-level system. Different types of probe transmission spectra obtained are attributed to complex dynamics of a coherent...

  2. On the mechanism of gene amplification induced under stress in Escherichia coli.

    Directory of Open Access Journals (Sweden)

    2006-04-01

    Full Text Available Gene amplification is a collection of processes whereby a DNA segment is reiterated to multiple copies per genome. It is important in carcinogenesis and resistance to chemotherapeutic agents, and can underlie adaptive evolution via increased expression of an amplified gene, evolution of new gene functions, and genome evolution. Though first described in the model organism Escherichia coli in the early 1960s, only scant information on the mechanism(s of amplification in this system has been obtained, and many models for mechanism(s were possible. More recently, some gene amplifications in E. coli were shown to be stress-inducible and to confer a selective advantage to cells under stress (adaptive amplifications, potentially accelerating evolution specifically when cells are poorly adapted to their environment. We focus on stress-induced amplification in E. coli and report several findings that indicate a novel molecular mechanism, and we suggest that most amplifications might be stress-induced, not spontaneous. First, as often hypothesized, but not shown previously, certain proteins used for DNA double-strand-break repair and homologous recombination are required for amplification. Second, in contrast with previous models in which homologous recombination between repeated sequences caused duplications that lead to amplification, the amplified DNAs are present in situ as tandem, direct repeats of 7-32 kilobases bordered by only 4 to 15 base pairs of G-rich homology, indicating an initial non-homologous recombination event. Sequences at the rearrangement junctions suggest nonhomologous recombination mechanisms that occur via template switching during DNA replication, but unlike previously described template switching events, these must occur over long distances. Third, we provide evidence that 3'-single-strand DNA ends are intermediates in the process, supporting a template-switching mechanism. Fourth, we provide evidence that lagging

  3. TECHNICAL DESIGN NOTE Multi-pass light amplification for tomographic particle image velocimetry applications

    Science.gov (United States)

    Ghaemi, Sina; Scarano, Fulvio

    2010-12-01

    The light source budget is a critical issue for tomographic particle image velocimetry (Tomo-PIV) systems due to its requirement for large illuminated volume and imaging at small apertures. In this work, a light amplification system based on the multi-pass concept is investigated for Tomo-PIV applications. The system design is performed on the basis of a theoretical model providing an estimation of the most important system parameters and above all the amplification gain. The multi-pass light amplification concept is verified experimentally by measuring the scattered light intensity across the illuminated volume. The results demonstrate a gain factor of 7 and 5 times in comparison with the single-pass and double-pass illumination approaches, respectively.

  4. 1  J, 0.5  kHz repetition rate picosecond laser.

    Science.gov (United States)

    Baumgarten, Cory; Pedicone, Michael; Bravo, Herman; Wang, Hanchen; Yin, Liang; Menoni, Carmen S; Rocca, Jorge J; Reagan, Brendan A

    2016-07-15

    We report the demonstration of a diode-pumped chirped pulse amplification Yb:YAG laser that produces λ=1.03  μm pulses of up to 1.5 J energy compressible to sub-5 ps duration at a repetition rate of 500 Hz (750 W average power). Amplification to high energy takes place in cryogenically cooled Yb:YAG active mirrors designed for kilowatt average power laser operation. This compact laser system will enable new advances in high-average-power ultrashort-pulse lasers and high-repetition-rate tabletop soft x-ray lasers. As a first application, the laser was used to pump a 400 Hz λ=18.9  nm laser. PMID:27420530

  5. Desert Amplification in a Warming Climate

    Science.gov (United States)

    Zhou, Liming

    2016-08-01

    Here I analyze the observed and projected surface temperature anomalies over land between 50°S-50°N for the period 1950–2099 by large-scale ecoregion and find strongest warming consistently and persistently seen over driest ecoregions such as the Sahara desert and the Arabian Peninsula during various 30-year periods, pointing to desert amplification in a warming climate. This amplification enhances linearly with the global mean greenhouse gases(GHGs) radiative forcing and is attributable primarily to a stronger GHGs-enhanced downward longwave radiation forcing reaching the surface over drier ecoregions as a consequence of a warmer and thus moister atmosphere in response to increasing GHGs. These results indicate that desert amplification may represent a fundamental pattern of global warming associated with water vapor feedbacks over land in low- and mid- latitudes where surface warming rates depend inversely on ecosystem dryness. It is likely that desert amplification might involve two types of water vapor feedbacks that maximize respectively in the tropical upper troposphere and near the surface over deserts, with both being very dry and thus extremely sensitive to changes of water vapor.

  6. Social amplification of risk: a conceptual framework

    International Nuclear Information System (INIS)

    One of the most perplexing problems in risk analysis is why some relatively minor risks or risk events, as assessed by technical experts, often elicit strong public concerns and result in substantial impacts upon society and economy. This article sets forth a conceptual framework that seeks to link systematically the technical assessment of risk with psychological, sociological, and cultural perspectives of risk perception and risk-related behavior. The main thesis is that hazards interact with psychological, social, institutional, and cultural processes in ways that may amplify or attenuate public responses to the risk or risk event. A structural description of the social amplification of risk is now possible. Amplification occurs at two stages: in the transfer of information about the risk, and in the response mechanisms of society. Signals about risk are processed by individual and social amplification stations, including the scientist who communicates the risk assessment, the news media, cultural groups, interpersonal networks, and others. Key steps of amplifications can be identified at each stage. The amplified risk leads to behavioral responses, which, in turn, result in secondary impacts. Models are presented that portray the elements and linkages in the proposed conceptual framework

  7. Desert Amplification in a Warming Climate

    Science.gov (United States)

    Zhou, Liming

    2016-01-01

    Here I analyze the observed and projected surface temperature anomalies over land between 50°S-50°N for the period 1950–2099 by large-scale ecoregion and find strongest warming consistently and persistently seen over driest ecoregions such as the Sahara desert and the Arabian Peninsula during various 30-year periods, pointing to desert amplification in a warming climate. This amplification enhances linearly with the global mean greenhouse gases(GHGs) radiative forcing and is attributable primarily to a stronger GHGs-enhanced downward longwave radiation forcing reaching the surface over drier ecoregions as a consequence of a warmer and thus moister atmosphere in response to increasing GHGs. These results indicate that desert amplification may represent a fundamental pattern of global warming associated with water vapor feedbacks over land in low- and mid- latitudes where surface warming rates depend inversely on ecosystem dryness. It is likely that desert amplification might involve two types of water vapor feedbacks that maximize respectively in the tropical upper troposphere and near the surface over deserts, with both being very dry and thus extremely sensitive to changes of water vapor. PMID:27538725

  8. Desert Amplification in a Warming Climate.

    Science.gov (United States)

    Zhou, Liming

    2016-01-01

    Here I analyze the observed and projected surface temperature anomalies over land between 50°S-50°N for the period 1950-2099 by large-scale ecoregion and find strongest warming consistently and persistently seen over driest ecoregions such as the Sahara desert and the Arabian Peninsula during various 30-year periods, pointing to desert amplification in a warming climate. This amplification enhances linearly with the global mean greenhouse gases(GHGs) radiative forcing and is attributable primarily to a stronger GHGs-enhanced downward longwave radiation forcing reaching the surface over drier ecoregions as a consequence of a warmer and thus moister atmosphere in response to increasing GHGs. These results indicate that desert amplification may represent a fundamental pattern of global warming associated with water vapor feedbacks over land in low- and mid- latitudes where surface warming rates depend inversely on ecosystem dryness. It is likely that desert amplification might involve two types of water vapor feedbacks that maximize respectively in the tropical upper troposphere and near the surface over deserts, with both being very dry and thus extremely sensitive to changes of water vapor. PMID:27538725

  9. PCR Amplification System of DNA Barcoding Genes ITS, ITS2 and rbcL from Xanthium%DNA条形码基因ITS·ITS2及rbcL在苍耳属可采用相同的PCR条件

    Institute of Scientific and Technical Information of China (English)

    胡伟毅; 汪连军; 盛志超

    2013-01-01

    [目的]为植物 DNA条形码标准基因筛选研究提供参考,减少植物 DNA条形码研究中的工作量。[方法]对7种苍耳属植物 ITS、ITS2及 rbcL基因采用相同的扩增条件(95℃4 min;[35 cycles:94℃30 s;52℃45 s;72℃45 s];72℃10 min;4℃保存)。[结果]3种DNA条形码基因同时成功扩增。[结论]这说明植物 DNA条形码基因中 ITS、ITS2及 rbcL的PCR条件存在合并可能性。%[Objective] This study aimed to provide reference and reduce the workload for screening standard DNA barcoding genes of plants. [Method] Three DNA bar-coding genes ITS, ITS2 and rbcL were amplified from seven Xanthium species un-der the same PCR condition: PCR amplification was started with initial denaturation at 95 ℃ for 4 min, fol owed by 35 cycles of denaturation at 94 ℃ for 30 s, anneal-ing at 52 ℃ for 45 s, and extension at 72 ℃ for 45 s; the amplification was com-pleted by holding the reaction mixture at 72 ℃ for 10 min to al ow complete exten-sion of PCR, and the PCR products were stored at 4 ℃. [Result] Three DNA bar-coding genes ITS, ITS2 and rbcL were al amplified successful y. [Conclusion] This study indicates that PCR amplification conditions for DNA barcoding genes ITS, ITS2 and rbcL in plants may be consistent.

  10. Electromagnetic waves amplification in a coaxial triode with virtual cathode

    Energy Technology Data Exchange (ETDEWEB)

    Grigoryev, V.P.; Antoshkin, M.Y.; Koval, T.V.; Kuryakov, A.M. [Tomsk Politechnical Univ. (Russian Federation)

    1995-11-01

    The present paper presents the results of analytical and numerical investigations on the amplification of microwaves in the vircator triode of coaxial making. The range of a parameters of the greatest amplification was define for TH and TE-modes.

  11. Weak value amplification via second-order correlated technique

    CERN Document Server

    Cui, Ting; Liu, Xiang; Zeng, Gui-Hua

    2015-01-01

    We propose a new framework combining weak measurement and second-order correlated technique. The theoretical analysis shows that WVA experiment can also be implemented by a second-order correlated system. We then build two-dimensional second-order correlated function patterns for achieving higher amplification factor and discuss the signal-to-noise ratio influence. Several advantages can be obtained by our proposal. For instance, detectors with high resolution are not necessary. Moreover, detectors with low saturation intensity are available in WVA setup. Finally, type-one technical noise can be effectively suppressed.

  12. A new evolutionary theory deduced mathematically from entropy amplification

    Institute of Scientific and Technical Information of China (English)

    2000-01-01

    A new evolutionary theory which is able to unite the present evolutionary debates is deduced mathematically from the principle of entropy amplification.It suggests that the extensive evolution is driven by the amplification of entropy,or microscopic diversity,and the biological evolution is driven by the amplification of biodiversity.Forming high hierarchies is the most important way for the amplification and brings out spontaneously three kinds of selection.This theory has some positive cultural meanings.

  13. Parametric Amplification of Vacuum Fluctuations in a Spinor Condensate

    DEFF Research Database (Denmark)

    Klempt, C.; Topic, O.; Gebreyesus, G.;

    2010-01-01

    Parametric amplification of vacuum fluctuations is crucial in modern quantum optics, enabling the creation of squeezing and entanglement. We demonstrate the parametric amplification of vacuum fluctuations for matter waves using a spinor F=2 87Rb condensate. Interatomic interactions lead to correl......Parametric amplification of vacuum fluctuations is crucial in modern quantum optics, enabling the creation of squeezing and entanglement. We demonstrate the parametric amplification of vacuum fluctuations for matter waves using a spinor F=2 87Rb condensate. Interatomic interactions lead...

  14. A cascade amplification strategy based on rolling circle amplification and hydroxylamine amplified gold nanoparticles enables chemiluminescence detection of adenosine triphosphate.

    Science.gov (United States)

    Wang, Ping; Zhang, Tonghuan; Yang, Taoyi; Jin, Nan; Zhao, Yanjun; Fan, Aiping

    2014-08-01

    A highly sensitive and selective chemiluminescent (CL) biosensor for adenosine triphosphate (ATP) was developed by taking advantage of the ATP-dependent enzymatic reaction (ATP-DER), the powerful signal amplification capability of rolling circle amplification (RCA), and hydroxylamine-amplified gold nanoparticles (Au NPs). The strategy relies on the ability of ATP, a cofactor of T4 DNA ligase, to trigger the ligation-RCA reaction. In the presence of ATP, the T4 DNA ligase catalyzes the ligation reaction between the two ends of the padlock probe, producing a closed circular DNA template that initiates the RCA reaction with phi29 DNA polymerase and dNTP. Therein, many complementary copies of the circular template can be generated. The ATP-DER is eventually converted into a detectable CL signal after a series of processes, including gold probe hybridization, hydroxylamine amplification, and oxidative gold metal dissolution coupled with a simple and sensitive luminol CL reaction. The CL signal is directly proportional to the ATP level. The results showed that the detection limit of the assay is 100 pM of ATP, which compares favorably with those of other ATP detection techniques. In addition, by taking advantage of ATP-DER, the proposed CL sensing system exhibits extraordinary specificity towards ATP and could distinguish the target molecule ATP from its analogues. The proposed method provides a new and versatile platform for the design of novel DNA ligation reaction-based CL sensing systems for other cofactors. This novel ATP-DER based CL sensing system may find wide applications in clinical diagnosis as well as in environmental and biomedical fields.

  15. Quantitation of viral load using real-time amplification techniques

    NARCIS (Netherlands)

    Niesters, H G

    2001-01-01

    Real-time PCR amplification techniques are currently used to determine the viral load in clinical samples for an increasing number of targets. Real-time PCR reduces the time necessary to generate results after amplification. In-house developed PCR and nucleic acid sequence-based amplification (NASBA

  16. Plasmonic Terahertz Amplification in Graphene-Based Asymmetric Hyperbolic Metamaterial

    Directory of Open Access Journals (Sweden)

    Igor Nefedov

    2015-05-01

    Full Text Available We propose and theoretically explore terahertz amplification, based on stimulated generation of plasmons in graphene asymmetric hyperbolic metamaterials (AHMM, strongly coupled to terahertz radiation. In contrast to the terahertz amplification in resonant nanocavities, AHMM provides a wide-band THz amplification without any reflection in optically thin graphene multilayers.

  17. Method Of Signal Amplification In Multi-Chromophore Luminescence Sensors

    Energy Technology Data Exchange (ETDEWEB)

    Levitsky, Igor A. (Fall River, MA); Krivoshlykov, Sergei G. (Shrewsbury, MA)

    2004-02-03

    A fluorescence-based method for highly sensitive and selective detection of analyte molecules is proposed. The method employs the energy transfer between two or more fluorescent chromophores in a carefully selected polymer matrix. In one preferred embodiment, signal amplification has been achieved in the fluorescent sensing of dimethyl methylphosphonate (DMMP) using two dyes, 3-aminofluoranthene (AM) and Nile Red (NR), in a hydrogen bond acidic polymer matrix. The selected polymer matrix quenches the fluorescence of both dyes and shifts dye emission and absorption spectra relative to more inert matrices. Upon DMMP sorption, the AM fluorescence shifts to the red at the same time the NR absorption shifts to the blue, resulting in better band overlap and increased energy transfer between chromophores. In another preferred embodiment, the sensitive material is incorporated into an optical fiber system enabling efficient excitation of the dye and collecting the fluorescent signal form the sensitive material on the remote end of the system. The proposed method can be applied to multichromophore luminescence sensor systems incorporating N-chromophores leading to N-fold signal amplification and improved selectivity. The method can be used in all applications where highly sensitive detection of basic gases, such as dimethyl methylphosphonate (DMMP), Sarin, Soman and other chemical warfare agents having basic properties, is required, including environmental monitoring, chemical industry and medicine.

  18. RNA amplification for successful gene profiling analysis

    Directory of Open Access Journals (Sweden)

    Wang Ena

    2005-07-01

    Full Text Available Abstract The study of clinical samples is often limited by the amount of material available to study. While proteins cannot be multiplied in their natural form, DNA and RNA can be amplified from small specimens and used for high-throughput analyses. Therefore, genetic studies offer the best opportunity to screen for novel insights of human pathology when little material is available. Precise estimates of DNA copy numbers in a given specimen are necessary. However, most studies investigate static variables such as the genetic background of patients or mutations within pathological specimens without a need to assess proportionality of expression among different genes throughout the genome. Comparative genomic hybridization of DNA samples represents a crude exception to this rule since genomic amplification or deletion is compared among different specimens directly. For gene expression analysis, however, it is critical to accurately estimate the proportional expression of distinct RNA transcripts since such proportions directly govern cell function by modulating protein expression. Furthermore, comparative estimates of relative RNA expression at different time points portray the response of cells to environmental stimuli, indirectly informing about broader biological events affecting a particular tissue in physiological or pathological conditions. This cognitive reaction of cells is similar to the detection of electroencephalographic patterns which inform about the status of the brain in response to external stimuli. As our need to understand human pathophysiology at the global level increases, the development and refinement of technologies for high fidelity messenger RNA amplification have become the focus of increasing interest during the past decade. The need to increase the abundance of RNA has been met not only for gene specific amplification, but, most importantly for global transcriptome wide, unbiased amplification. Now gene

  19. Multi-pass light amplification for tomographic particle image velocimetry applications

    NARCIS (Netherlands)

    Ghaemi, S.; Scarano, F.

    2010-01-01

    The light source budget is a critical issue for tomographic particle image velocimetry (Tomo-PIV) systems due to its requirement for large illuminated volume and imaging at small apertures. In this work, a light amplification system based on the multi-pass concept is investigated for Tomo-PIV applic

  20. Increased centrosome amplification in aged stem cells of the Drosophila midgut

    International Nuclear Information System (INIS)

    Highlights: • Increased centrosome amplification in ISCs of aged Drosophila midguts. • Increased centrosome amplification in ISCs of oxidative stressed Drosophila midguts. • Increased centrosome amplification in ISCs by overexpression of PVR, EGFR, and AKT. • Supernumerary centrosomes can be responsible for abnormal ISC polyploid cells. • Supernumerary centrosomes can be a useful marker for aging stem cells. - Abstract: Age-related changes in long-lived tissue-resident stem cells may be tightly linked to aging and age-related diseases such as cancer. Centrosomes play key roles in cell proliferation, differentiation and migration. Supernumerary centrosomes are known to be an early event in tumorigenesis and senescence. However, the age-related changes of centrosome duplication in tissue-resident stem cells in vivo remain unknown. Here, using anti-γ-tubulin and anti-PH3, we analyzed mitotic intestinal stem cells with supernumerary centrosomes in the adult Drosophila midgut, which may be a versatile model system for stem cell biology. The results showed increased centrosome amplification in intestinal stem cells of aged and oxidatively stressed Drosophila midguts. Increased centrosome amplification was detected by overexpression of PVR, EGFR, and AKT in intestinal stem cells/enteroblasts, known to mimic age-related changes including hyperproliferation of intestinal stem cells and hyperplasia in the midgut. Our data show the first direct evidence for the age-related increase of centrosome amplification in intestinal stem cells and suggest that the Drosophila midgut is an excellent model for studying molecular mechanisms underlying centrosome amplification in aging adult stem cells in vivo

  1. Direct Y-STR amplification of body fluids deposited on commonly found crime scene substrates.

    Science.gov (United States)

    Dargay, Amanda; Roy, Reena

    2016-04-01

    Body fluids detected on commonly found crime scene substrates require extraction, purification and quantitation of DNA prior to amplification and generation of short tandem repeat (STR) DNA profiles. In this research Y-STR profiles were generated via direct amplification of blood and saliva deposited on 12 different substrates. These included cigarette butts, straws, grass, leaves, woodchips and seven different types of fabric. After depositing either 0.1 μL of blood or 0.5 μL of saliva, each substrate containing the dry body fluid stain was punched using a Harris 1.2 mm micro-punch. Each of these punched substrates, a total of 720 samples, containing minute amount of blood or saliva was either amplified directly without any pre-treatment, or was treated with one of the four washing reagents or buffer. In each of these five experimental groups the substrates containing the body fluid remained in the amplification reagent during the thermal cycling process. Each sample was amplified with the three direct Y-STR amplification kits; AmpFℓSTR(®) Yfiler(®) Direct, Yfiler(®) Plus Amplification Kits and the PowerPlex(®) Y23 System. Complete and concordant Y-STR profiles were successfully obtained from most of these 12 challenging crime scene objects when the stains were analyzed by at least one of the five experimental groups. The reagents and buffer were interchangeable among the three amplification kits, however, pre-treatment with these solutions did not appear to enhance the quality or the number of the full profiles generated with direct amplification. This study demonstrates that blood and saliva deposited on these simulated crime scene objects can be amplified directly.

  2. Increased centrosome amplification in aged stem cells of the Drosophila midgut

    Energy Technology Data Exchange (ETDEWEB)

    Park, Joung-Sun; Pyo, Jung-Hoon; Na, Hyun-Jin; Jeon, Ho-Jun; Kim, Young-Shin [Department of Molecular Biology, Pusan National University, Busan 609-735 (Korea, Republic of); Arking, Robert, E-mail: aa2210@wayne.edu [Department of Biological Sciences, Wayne State University, Detroit, MI 48202 (United States); Yoo, Mi-Ae, E-mail: mayoo@pusan.ac.kr [Department of Molecular Biology, Pusan National University, Busan 609-735 (Korea, Republic of)

    2014-07-25

    Highlights: • Increased centrosome amplification in ISCs of aged Drosophila midguts. • Increased centrosome amplification in ISCs of oxidative stressed Drosophila midguts. • Increased centrosome amplification in ISCs by overexpression of PVR, EGFR, and AKT. • Supernumerary centrosomes can be responsible for abnormal ISC polyploid cells. • Supernumerary centrosomes can be a useful marker for aging stem cells. - Abstract: Age-related changes in long-lived tissue-resident stem cells may be tightly linked to aging and age-related diseases such as cancer. Centrosomes play key roles in cell proliferation, differentiation and migration. Supernumerary centrosomes are known to be an early event in tumorigenesis and senescence. However, the age-related changes of centrosome duplication in tissue-resident stem cells in vivo remain unknown. Here, using anti-γ-tubulin and anti-PH3, we analyzed mitotic intestinal stem cells with supernumerary centrosomes in the adult Drosophila midgut, which may be a versatile model system for stem cell biology. The results showed increased centrosome amplification in intestinal stem cells of aged and oxidatively stressed Drosophila midguts. Increased centrosome amplification was detected by overexpression of PVR, EGFR, and AKT in intestinal stem cells/enteroblasts, known to mimic age-related changes including hyperproliferation of intestinal stem cells and hyperplasia in the midgut. Our data show the first direct evidence for the age-related increase of centrosome amplification in intestinal stem cells and suggest that the Drosophila midgut is an excellent model for studying molecular mechanisms underlying centrosome amplification in aging adult stem cells in vivo.

  3. Extension and validation of the GN model for non-linear interference to uncompensated links using Raman amplification.

    Science.gov (United States)

    Curri, Vittorio; Carena, Andrea; Poggiolini, Pierluigi; Bosco, Gabriella; Forghieri, Fabrizio

    2013-02-11

    We show the extension of the Gaussian Noise model, which describes non-linear propagation in uncompensated links of multilevel modulation formats, to systems using Raman amplification. We successfully validate the analytical results by comparison with numerical simulations of Nyquist-WDM PM-16QAM channels transmission over multi-span uncompensated links made of a single fiber type and using hybrid EDFA/Raman amplification with counter-propagating pumps. We analyze two typical high- and low-dispersion fiber types. We show that Raman amplification always induces a limited non-linear interference enhancement compared to the dominant ASE noise reduction.

  4. Amplification of postwildfire peak flow by debris

    Science.gov (United States)

    Kean, J. W.; McGuire, L. A.; Rengers, F. K.; Smith, J. B.; Staley, D. M.

    2016-08-01

    In burned steeplands, the peak depth and discharge of postwildfire runoff can substantially increase from the addition of debris. Yet methods to estimate the increase over water flow are lacking. We quantified the potential amplification of peak stage and discharge using video observations of postwildfire runoff, compiled data on postwildfire peak flow (Qp), and a physically based model. Comparison of flood and debris flow data with similar distributions in drainage area (A) and rainfall intensity (I) showed that the median runoff coefficient (C = Qp/AI) of debris flows is 50 times greater than that of floods. The striking increase in Qp can be explained using a fully predictive model that describes the additional flow resistance caused by the emergence of coarse-grained surge fronts. The model provides estimates of the amplification of peak depth, discharge, and shear stress needed for assessing postwildfire hazards and constraining models of bedrock incision.

  5. Gravito-magnetic amplification in cosmology

    CERN Document Server

    Tsagas, Christos G

    2009-01-01

    Magnetic fields interact with gravitational waves in various ways. We consider the coupling between the Weyl and the Maxwell fields in cosmology and study the effects of the former on the latter. The approach is fully analytical and the results are gauge-invariant. We show that the nature and the outcome of the gravito-magnetic interaction depends on the electric properties of the cosmic medium. When the conductivity is high, gravitational waves reduce the standard (adiabatic) decay rate of the B-field, leading to its superadiabatic amplification. In poorly conductive environments, on the other hand, Weyl-curvature distortions can result into the resonant amplification of large-scale cosmological magnetic fields. Driven by the gravitational waves, these B-fields oscillate with an amplitude that is found to diverge when the wavelengths of the two sources coincide. We present technical and physical aspects of the gravito-magnetic interaction and discuss its potential implications.

  6. Diffusive shock acceleration and magnetic field amplification

    CERN Document Server

    Schure, K M; Drury, L O'C; Bykov, A M

    2012-01-01

    Diffusive shock acceleration is the theory of particle acceleration through multiple shock crossings. In order for this process to proceed at a rate that can be reconciled with observations of high-energy electrons in the vicinity of the shock, and for cosmic rays protons to be accelerated to energies up to observed galactic values, significant magnetic field amplification is required. In this review we will discuss various theories on how magnetic field amplification can proceed in the presence of a cosmic ray population. On both short and long scales, cosmic ray streaming can induce instabilities that act to amplify the magnetic field. Developments in this area that have occurred over the past decade are the main focus of this paper.

  7. Introduction to Quantum Noise, Measurement and Amplification

    OpenAIRE

    Clerk, A. A.; Devoret, M. H.; Girvin, S. M.; Marquardt, F.; Schoelkopf, R. J.

    2008-01-01

    The topic of quantum noise has become extremely timely due to the rise of quantum information physics and the resulting interchange of ideas between the condensed matter and AMO/quantum optics communities. This review gives a pedagogical introduction to the physics of quantum noise and its connections to quantum measurement and quantum amplification. After introducing quantum noise spectra and methods for their detection, we describe the basics of weak continuous measurements. Particular atte...

  8. Loop mediated isothermal amplification: An innovative gene amplification technique for animal diseases.

    Science.gov (United States)

    Sahoo, Pravas Ranjan; Sethy, Kamadev; Mohapatra, Swagat; Panda, Debasis

    2016-05-01

    India being a developing country mainly depends on livestock sector for its economy. However, nowadays, there is emergence and reemergence of more transboundary animal diseases. The existing diagnostic techniques are not so quick and with less specificity. To reduce the economy loss, there should be a development of rapid, reliable, robust diagnostic technique, which can work with high degree of sensitivity and specificity. Loop mediated isothermal amplification assay is a rapid gene amplification technique that amplifies nucleic acid under an isothermal condition with a set of designed primers spanning eight distinct sequences of the target. This assay can be used as an emerging powerful, innovative gene amplification diagnostic tool against various pathogens of livestock diseases. This review is to highlight the basic concept and methodology of this assay in livestock disease. PMID:27284221

  9. Impacts of seed power on amplification performance in pulsed double-clad fiber amplifier

    Institute of Scientific and Technical Information of China (English)

    Fangpei Zhang; Jianqiang Zhu; Zhijiang Wang; Qihong Lou; Jun Zhou; Hongming Zhao; Songtao Du; Jingxing Dong; Yunrong Wei; Bing He; Jinyan Li

    2008-01-01

    A pulsed master-oscillator fiber power amplifier system with near diffraction-limited output by use of China-made large-mode-area fiber and a (2 + 1) × 1 multimode combiner is reported. The effect of the seed power on the amplification performance is found. For the seed power, there exists a range within which the pulsed fiber amplifier can operate safely and reliably at a certain pump power. With the seed average power of 70 mW, the amplification performances of the fiber amplifier are investigated.

  10. External and semi-internal controls for PCR amplification of homologous sequences in mixed templates

    DEFF Research Database (Denmark)

    Kalle, Elena; Gulevich, Alexander; Rensing, Christopher Günther T

    2013-01-01

    . This study demonstrated the efficiency of a model mixed template as an adequate external amplification control for a particular PCR application. The conditions of multi-template PCR do not allow implementation of a classic internal control; therefore we developed a convenient semi-internal control...... practice in different PCR assays. We propose the inclusion of an analogous approach as a quality control system for multi-template PCR applications. The amplification controls must take into account the characteristics of multi-template PCR and be able to effectively monitor particular assay performance...

  11. Endonuclease-rolling circle amplification-based method for sensitive analysis of DNA-binding protein

    Institute of Scientific and Technical Information of China (English)

    Min Li Li; Dong Rui Zhou; Hong Zhao; Jin Ke Wang; Zu Hong Lu

    2009-01-01

    A sensitive approach for the qualitative detection of DNA-binding protein on the microarray was developed. DNA complexes in which a partial duplex region is formed from a biotin-primer and a circle single strand DNA (ssDNA) were spotted on a microarray. The endonuclease recognition site (ERS) and the DNA-binding sites (DBS) were arranged side by side within the duplex region. The working principle of the detection system is described as follows: when the DNA-binding protein capture the DBS, the endonuclease could not attach to the ERS, and the immobilized primer in the DNA complex could be extended along the circle ssDNA by rolling circle amplification (RCA). When no protein protects the DBS, the ERS could be attacked by the endonuclease and subsequently no rolling circle amplification occurs. Thereby we can detect the sequence specific DNA-binding activity with high-sensitivity due to the signal amplification of RCA.

  12. Assessment of whole genome amplification-induced bias through high-throughput, massively parallel whole genome sequencing

    Directory of Open Access Journals (Sweden)

    Plant Ramona N

    2006-08-01

    Full Text Available Abstract Background Whole genome amplification is an increasingly common technique through which minute amounts of DNA can be multiplied to generate quantities suitable for genetic testing and analysis. Questions of amplification-induced error and template bias generated by these methods have previously been addressed through either small scale (SNPs or large scale (CGH array, FISH methodologies. Here we utilized whole genome sequencing to assess amplification-induced bias in both coding and non-coding regions of two bacterial genomes. Halobacterium species NRC-1 DNA and Campylobacter jejuni were amplified by several common, commercially available protocols: multiple displacement amplification, primer extension pre-amplification and degenerate oligonucleotide primed PCR. The amplification-induced bias of each method was assessed by sequencing both genomes in their entirety using the 454 Sequencing System technology and comparing the results with those obtained from unamplified controls. Results All amplification methodologies induced statistically significant bias relative to the unamplified control. For the Halobacterium species NRC-1 genome, assessed at 100 base resolution, the D-statistics from GenomiPhi-amplified material were 119 times greater than those from unamplified material, 164.0 times greater for Repli-G, 165.0 times greater for PEP-PCR and 252.0 times greater than the unamplified controls for DOP-PCR. For Campylobacter jejuni, also analyzed at 100 base resolution, the D-statistics from GenomiPhi-amplified material were 15 times greater than those from unamplified material, 19.8 times greater for Repli-G, 61.8 times greater for PEP-PCR and 220.5 times greater than the unamplified controls for DOP-PCR. Conclusion Of the amplification methodologies examined in this paper, the multiple displacement amplification products generated the least bias, and produced significantly higher yields of amplified DNA.

  13. The national protocol for paediatric amplification in Australia.

    Science.gov (United States)

    King, Alison M

    2010-01-01

    This document describes the national protocol for the selection, fitting, verification, and evaluation of amplification for hearing-impaired children in Australia. It also outlines the approach to management of children who have auditory neuropathy spectrum disorder, children who have mild and unilateral hearing loss, and children who require cochlear implantation. Audiological management of all Australian citizens and permanent residents under twenty-one years of age who have a hearing loss is carried out by the national hearing service provider, Australian Hearing. It is funded by the Australian Government's Hearing Services Program to provide fully subsidised hearing aids, frequency modulated (FM) systems and ongoing audiological management. All hearing aids for children are multi-channel devices that offer wide dynamic range compression, directional microphone technology and feedback cancellation as well as access to multiple listening programs, telecoil and audio-input facilities. Hearing aid gain, frequency response and maximum power output are derived according to the NAL-NL1 prescription procedure and verified using real ear measurements. Amplification benefit is evaluated using a range of speech perception tests and functional assessment questionnaires. PMID:19919326

  14. Improving temporal contrast by cross-polarized wave generation at a sub-petawatt laser facility

    Science.gov (United States)

    Xie, Na; Wang, Xiaodong; Huang, Wanqing; Sun, Li; Guo, Yi; Li, Qing; Zhao, Runchang; Su, Jingqin

    2011-10-01

    Temporal contrast is an important factor affecting the application of ultraintense and ultrashort laser systems. In this paper, we employ cross-polarized wave (XPW) generation to improve the temporal contrast for ultraintense and ultrashort pulses in a 300 TW Ti:Sapphire laser facility, i.e. the super intense laser for experiment on the extremes (SILEX-I). We designed a double chirped-pulse amplification (CPA) system with an intermediate nonlinear temporal pulse filter based on XPW generation and the estimated output energy is more than 300 mJ for the new front-end system. The experimental results show that the output energy of the double CPA system is greater than 370 mJ. The amplified spontaneous emission (ASE) pedestal is suppressed significantly and the temporal contrast is improved by more than two orders of magnitude.

  15. Biomass changes and trophic amplification of plankton in a warmer ocean

    KAUST Repository

    Chust, Guillem

    2014-05-07

    Ocean warming can modify the ecophysiology and distribution of marine organisms, and relationships between species, with nonlinear interactions between ecosystem components potentially resulting in trophic amplification. Trophic amplification (or attenuation) describe the propagation of a hydroclimatic signal up the food web, causing magnification (or depression) of biomass values along one or more trophic pathways. We have employed 3-D coupled physical-biogeochemical models to explore ecosystem responses to climate change with a focus on trophic amplification. The response of phytoplankton and zooplankton to global climate-change projections, carried out with the IPSL Earth System Model by the end of the century, is analysed at global and regional basis, including European seas (NE Atlantic, Barents Sea, Baltic Sea, Black Sea, Bay of Biscay, Adriatic Sea, Aegean Sea) and the Eastern Boundary Upwelling System (Benguela). Results indicate that globally and in Atlantic Margin and North Sea, increased ocean stratification causes primary production and zooplankton biomass to decrease in response to a warming climate, whilst in the Barents, Baltic and Black Seas, primary production and zooplankton biomass increase. Projected warming characterized by an increase in sea surface temperature of 2.29 ± 0.05 °C leads to a reduction in zooplankton and phytoplankton biomasses of 11% and 6%, respectively. This suggests negative amplification of climate driven modifications of trophic level biomass through bottom-up control, leading to a reduced capacity of oceans to regulate climate through the biological carbon pump. Simulations suggest negative amplification is the dominant response across 47% of the ocean surface and prevails in the tropical oceans; whilst positive trophic amplification prevails in the Arctic and Antarctic oceans. Trophic attenuation is projected in temperate seas. Uncertainties in ocean plankton projections, associated to the use of single global and

  16. Isothermal RNA Sequence Amplification Method for Rapid Antituberculosis Drug Susceptibility Testing of Mycobacterium tuberculosis

    OpenAIRE

    Takakura, Shunji; Tsuchiya, Shigeo; Fujihara, Naoko; Kudo, Toyoichiro; Iinuma, Yoshitsugu; Mitarai, Satoshi; Ichiyama, Satoshi; Yasukawa, Kiyoshi; Ishiguro, Takahiko

    2005-01-01

    RNA transcript quantification by an isothermal sequence amplification reaction was evaluated for susceptibility testing of 15 Mycobacterium tuberculosis strains. Agreement with the proportion method on Ogawa egg medium and the BACTEC MGIT 960 system was 100 and 87% for rifampin, 93 and 100% for isoniazid, 60 and 53% for ethambutol, and 80 and 80% for streptomycin, respectively.

  17. Sensitive SERS detection of miRNA via enzyme-free DNA machine signal amplification.

    Science.gov (United States)

    Li, Xiaoxiao; Ye, Sujuan; Luo, Xiliang

    2016-08-11

    In this work, an enzyme-free signal amplified detection platform is described for miRNA detection with a DNA fueled molecular machine. Coupling SERS technology with multiple amplification modes, this flexible biosensing system exhibits high sensitivity and specificity. PMID:27469084

  18. Molecular beacon probes combined with amplification by NASBA enable homogeneous, real-time detection of RNA

    NARCIS (Netherlands)

    Leone, G.; Schijndel, van H.; Gemen, van B.; Kramer, F.R.; Schoen, C.D.

    1998-01-01

    Molecular beacon probes can be employed in a NASBA amplicon detection system to generate a specific fluorescent signal concomitantly with amplification. A molecular beacon, designed to hybridize within the target sequence, was introduced into NASBA reactions that amplify the genomic RNA of potato le

  19. OPTICAL SOLITONS: Fibreoptic communication lines with distributed Raman amplification: Numerical simulation

    Science.gov (United States)

    Nasieva, I. O.; Fedoruk, Mikhail P.

    2003-10-01

    The properties of optical solitons in variable-dispersion fibreoptic communication lines in which distributed Raman amplification of optical signals is used are studied by numerical simulation. It is shown that solitons can serve as carriers of information in communication systems with a data transmission rate exceeding 10 Gbit s-1.

  20. Analysis of numerical stability and amplification matrices: Fourth-order Runge-Kutta methods

    Science.gov (United States)

    Kennedy, E. W.

    1979-01-01

    Amplification matrices, numerical kernels, stable, and exponentially stable numerical solutions are examined. The various techniques involved in these concepts are applied to certain systems that have Jordan forms, which are nondiagonal, with particular interest in the case of imaginary or zero eigenvalues.

  1. Parametric Amplification of Gravitational Fluctuations during Reheating

    International Nuclear Information System (INIS)

    Cosmological perturbations can undergo amplification by parametric resonance during preheating even on scales larger than the Hubble radius, without violating causality. A unified description of gravitational and matter fluctuations is crucial to determine the strength of the instability. To extract specific signatures of the oscillating inflaton field during reheating, it is essential to focus on a variable describing metric fluctuations which is constant in the standard analyses of inflation. For a massive inflaton without self-coupling, we find no additional growth of superhorizon modes during reheating beyond the usual predictions. For a massless self-coupled inflaton, there is a sub-Hubble scale resonance. copyright 1999 The American Physical Society

  2. High power laser research and development at the Laboratory for Laser Energetics

    International Nuclear Information System (INIS)

    As part of its research mission - to investigate the interaction of intense radiation with matter - the Laboratory for Laser Energetics (LLE) of the University of Rochester is developing a number of high-peak power and high-average-power laser systems. In this paper we highlight some of the LLE work on solid-state laser research, development and applications. Specifically, we discuss the performance and operating characteristics of Omega, a twenty-four beam, 4000 Joule, Nd:glass laser system which is frequently tripled using the polarization mismatch scheme. We also discuss progress in efforts to develop high-average-power solid-state laser systems with active-mirror and slab geometries and to implement liquid-crystal devices in high-power Nd:glass lasers. Finally we present results from a program to develop a compact, ultrahigh-peak-power solid-state laser using the concept of frequency chirped pulse amplification

  3. Amplification of fluorescence using collinear picosecond optical parametric amplification at degeneracy

    Institute of Scientific and Technical Information of China (English)

    Zhang Jing; Zhang Qiu-Lin; Jiang Man; Zhang Dong-Xiang; Feng Bao-Hua; Zhang Jing-Yuan

    2012-01-01

    We demonstrate the output characteristic of broadband parametric amplification of incoherent light pulses in a 355-nm pumped degenerate picosecond optical parametric amplification with either saturated or unsaturated amplification.The optical parametric amplifier is seeded by the fluorescence generated in a solution of pyridine-1 dye in ethanol.With the saturated amplification,we can obtain high energy incoherent light pulses,whose full widtth at half maximum bandwidth varies from 16 nm to 53 nm for the different phase matching angles near degeneracy.Moreover,the unsaturated bandwidth of the amplified pulses fits well to the calculated result at degeneracy.Selecting s-polarized fluorescence with a Glan-Taylor prism,the maximum bandwidth of the amplified fluorescence is found to be 59 nm for a purely s-polarized seed.The maximum output energy is 0.67 mJ for the optical parametric amplifier.By using an optical filter and compressor,the generated high energy incoherent light has great potential as the incoherent pump,signal or idler wave of a parametric down-conversion process,so that a wave with a high degree of coherence can be generated from an incoherent pump light.

  4. Multiplex allele-specific target amplification based on PCR suppression

    OpenAIRE

    Broude, Natalia E.; Zhang, Lingang; Woodward, Karen; Englert, David; Cantor, Charles R.

    2001-01-01

    We have developed a strategy for multiplex PCR based on PCR suppression. PCR suppression allows DNA target amplification with only one sequence-specific primer per target and a second primer that is common for all targets. Therefore, an n-plex PCR would require only n + 1 primers. We have demonstrated uniform, efficient amplification of targeted sequences in 14-plex PCR. The high specificity of suppression PCR also provides multiplexed amplification with allele specifi...

  5. Loss of KLF14 triggers centrosome amplification and tumorigenesis

    OpenAIRE

    Fan, Guangjian; Sun, Lianhui; Shan, Peipei; Zhang, Xianying; Huan, Jinliang; Li, Dali; Wang, Tingting; Wei, Tingting; Zhang, Xiaohong; Gu, Xiaoyang; Yao, Liangfang; Xuan, Yang; Hou, Zhaoyuan; Cui, Yongping; Cao, Liu

    2015-01-01

    Centrosome amplification is frequent in cancer, but the underlying mechanisms remain unclear. Here we report that disruption of the Kruppel-like factor 14 (KLF14) gene in mice causes centrosome amplification, aneuploidy and spontaneous tumorigenesis. Molecularly, KLF14 functions as a transcriptional repressor of Plk4, a polo-like kinase whose overexpression induces centrosome overduplication. Transient knockdown of KLF14 is sufficient to induce Plk4-directed centrosome amplification. Clinical...

  6. Experimental noiseless linear amplification using weak measurements

    Science.gov (United States)

    Ho, Joseph; Boston, Allen; Palsson, Matthew; Pryde, Geoff

    2016-09-01

    The viability of quantum communication schemes rely on sending quantum states of light over long distances. However, transmission loss can degrade the signal strength, adding noise. Heralded noiseless amplification of a quantum signal can provide a solution by enabling longer direct transmission distances and by enabling entanglement distillation. The central idea of heralded noiseless amplification—a conditional modification of the probability distribution over photon number of an optical quantum state—is suggestive of a parallel with weak measurement: in a weak measurement, learning partial information about an observable leads to a conditional back-action of a commensurate size. Here we experimentally investigate the application of weak, or variable-strength, measurements to the task of heralded amplification, by using a quantum logic gate to weakly couple a small single-optical-mode quantum state (the signal) to an ancilla photon (the meter). The weak measurement is carried out by choosing the measurement basis of the meter photon and, by conditioning on the meter outcomes, the signal is amplified. We characterise the gain of the amplifier as a function of the measurement strength, and use interferometric methods to show that the operation preserves the coherence of the signal.

  7. Space Optical Communications Using Laser Beam Amplification

    Science.gov (United States)

    Agrawal, Govind

    2015-01-01

    The Space Optical Communications Using Laser Beam Amplification (SOCLBA) project will provide a capability to amplify a laser beam that is received in a modulating retro-reflector (MRR) located in a satellite in low Earth orbit. It will also improve the pointing procedure between Earth and spacecraft terminals. The technology uses laser arrays to strengthen the reflected laser beam from the spacecraft. The results of first year's work (2014) show amplification factors of 60 times the power of the signal beam. MMRs are mirrors that reflect light beams back to the source. In space optical communications, a high-powered laser interrogator beam is directed from the ground to a satellite. Within the satellite, the beam is redirected back to ground using the MMR. In the MMR, the beam passes through modulators, which encode a data signal onto the returning beam. MMRs can be used in small spacecraft for optical communications. The SOCLBA project is significant to NASA and small spacecraft due to its application to CubeSats for optical data transmission to ground stations, as well as possible application to spacecraft for optical data transmission.

  8. Magnetic Field Amplification in Young Galaxies

    CERN Document Server

    Schober, Jennifer; Klessen, Ralf S

    2013-01-01

    The Universe at present is highly magnetized, with fields of the order of a few 10^-5 G and coherence lengths larger than 10 kpc in typical galaxies like the Milky Way. We propose that the magnetic field was amplified to this values already during the formation and the early evolution of the galaxies. Turbulence in young galaxies is driven by accretion as well as by supernova (SN) explosions of the first generation of stars. The small-scale dynamo can convert the turbulent kinetic energy into magnetic energy and amplify very weak primordial magnetic seed fields on short timescales. The amplification takes place in two phases: in the kinematic phase the magnetic field grows exponentially, with the largest growth on the smallest non-resistive scale. In the following non-linear phase the magnetic energy is shifted towards larger scales until the dynamo saturates on the turbulent forcing scale. To describe the amplification of the magnetic field quantitatively we model the microphysics in the interstellar medium ...

  9. Seismic Wave Amplification in 3D Alluvial Basins: 3D/1D Amplification Ratios from Fast Multipole BEM Simulations

    CERN Document Server

    Fajardo, Kristel C Meza; Chaillat, Stéphanie; Lenti, Luca

    2016-01-01

    In this work, we study seismic wave amplification in alluvial basins having 3D standard geometries through the Fast Multipole Boundary Element Method in the frequency domain. We investigate how much 3D amplification differs from the 1D (horizontal layering) case. Considering incident fields of plane harmonic waves, we examine the relationships between the amplification level and the most relevant physical parameters of the problem (impedance contrast, 3D aspect ratio, vertical and oblique incidence of plane waves). The FMBEM results show that the most important parameters for wave amplification are the impedance contrast and the so-called equivalent shape ratio. Using these two parameters, we derive simple rules to compute the fundamental frequency for various 3D basin shapes and the corresponding 3D/1D amplification factor for 5% damping. Effects on amplification due to 3D basin asymmetry are also studied and incorporated in the derived rules.

  10. Development of a sub-petawatt ultrashort laser facility

    Science.gov (United States)

    Wang, Xiaodong; Zhu, Qihua; Su, Jingqin; Xie, Na; Jiang, Dongbin; Zhou, Kainan; Huang, Xiaojun; Zeng, Xiaoming; Guo, Yi; Sun, Li; Li, Qing

    2014-11-01

    The paper presents the development of a sub-petawatt ultrashort laser facility, i.e. the upgraded super intense laser for experiment on the extremes (SILEX-I). The facility is a multi-stage Ti:sapphire chirped pulse amplification (CPA) laser system. Cross-polarized wave generation was used to improve the temporal contrast. An adaptive optical system was utilized to correct wavefront aberrations and to improve focusability before each shot. After upgrading, the maximum energy is 20.1 J, the recompressed pulse width is 26.8 fs and the peak power is up to 750 TW. The temporal contrast is around 109. The on-target focal spot size (full width at half maximum (FWHM)) is Φ6.5 μm and the focused intensity is greater than 4x1020 W/cm2.

  11. Femtosecond laser technologies for linear collider designs

    Energy Technology Data Exchange (ETDEWEB)

    Kobayashi, K. E-mail: kty_kobayashi@shi.co.jp; Endo, A

    2001-10-11

    A highly stabilized high-energy femtosecond laser system was developed for Compton X-ray experiments. The laser system is based on the chirped pulse amplification, and each component is actively or passively stabilized. A master oscillator with less than 100 fs timing jitter, two independent oscillators with 300 fs relative timing lag, a new measurement technique of timing fluctuation of low-repetition amplified pulse, and a special designed regenerative amplifier with high quality beam were developed. New technical options for linear collider are proposed based on these expertises. The options are temporally square pulse for low emittance electron generation, a timing stabilized seeder for CO{sub 2} amplifier, and multi-pulse high-energy lasers for {gamma}-{gamma} collision and for multi-bunch electron generation.

  12. Femtosecond laser technologies for linear collider designs

    CERN Document Server

    Kobayashi, K

    2001-01-01

    A highly stabilized high-energy femtosecond laser system was developed for Compton X-ray experiments. The laser system is based on the chirped pulse amplification, and each component is actively or passively stabilized. A master oscillator with less than 100 fs timing jitter, two independent oscillators with 300 fs relative timing lag, a new measurement technique of timing fluctuation of low-repetition amplified pulse, and a special designed regenerative amplifier with high quality beam were developed. New technical options for linear collider are proposed based on these expertises. The options are temporally square pulse for low emittance electron generation, a timing stabilized seeder for CO sub 2 amplifier, and multi-pulse high-energy lasers for gamma-gamma collision and for multi-bunch electron generation.

  13. Induction and Amplification of Non-Newtonian Gravitational Fields

    CERN Document Server

    Tajmar, M

    2001-01-01

    One obtains a Maxwell-like structure of gravitation by applying the weak-field approximation to the well accepted theory of general relativity or by extending Newton's laws to time-dependent systems. This splits gravity in two parts, namely a gravitoelectric and gravitomagnetic (or cogravitational) one. Due to the obtained similar structure between gravitation and electromagnetism, one can express one field by the other one using a coupling constant depending on the mass to charge ratio of the field source. Calculations of induced gravitational fields using state-of-the-art fusion plasmas reach only accelerator threshold values for laboratory testing. Possible amplification mechanisms are mentioned in the literature and need to be explored. The possibility of using the principle of equivalence in the weak field approximation to induce non-Newtonian gravitational fields and the influence of electric charge on the free fall of bodies are also investigated, leading to some additional experimental recommendations...

  14. Self-Amplification of Solid Friction in Interleaved Assemblies

    Science.gov (United States)

    Alarcón, Héctor; Salez, Thomas; Poulard, Christophe; Bloch, Jean-Francis; Raphaël, Élie; Dalnoki-Veress, Kari; Restagno, Frédéric

    2016-01-01

    It is nearly impossible to separate two interleaved phone books when held by their spines. A full understanding of this astonishing demonstration of solid friction in complex assemblies remains elusive. In this Letter, we report on experiments with controlled booklets and show that the force required increases sharply with the number of sheets. A model captures the effect of the number of sheets, their thickness, and the overlapping distance. Furthermore, the data collapse onto a self-similar master curve with one dimensionless amplification parameter. In addition to solving a long-standing familiar enigma, this model system provides a framework with which one can accurately measure friction forces and coefficients at low loads, and that has relevance to complex assemblies from the macro- to the nanoscale.

  15. Microchameleons: nonlinear chemical microsystems for amplification and sensing.

    Science.gov (United States)

    Bishop, K J M; Gray, T P; Fialkowski, M; Grzybowski, B A

    2006-09-01

    In biological systems, the coupling of nonlinear biochemical kinetics and molecular transport enables functional sensing and "signal" amplification across many length scales. Drawing on biological inspiration, we describe how artificial reaction-diffusion (RD) microsystems can provide a basis for sensing applications, capable of amplifying micro- and nanoscopic events into macroscopic visual readouts. The RD applications reviewed here are based on a novel experimental technique, WETS for Wet Stamping, which offers unprecedented control over RD processes in microscopic and complex geometries. It is discussed how RD can be used to sense subtle differences in the thickness and/or absorptivity of thin absorptive films, amplify macromolecular phase transitions, detect the presence and quality of self-assembled monolayers, and provide dynamic spatiotemporal readouts of chemical "metabolites." PMID:17014236

  16. Control of amplification without inversion in H2 and LiH molecules: Dependence on relative magnitude of probe and coherent field Rabi frequencies in three-level system

    Indian Academy of Sciences (India)

    Sulagna Dutta; Krishna Rai Dastidar

    2006-12-01

    Dependence of amplification without inversion (AWI) on the relative strength of probe and coherent field Rabi frequencies has been studied in H2 and LiH molecules for three-level configuration. We have derived exact analytical expressions for coherences and populations keeping all the orders of probe field Rabi frequency () and coherent field Rabi frequency () in the steady state limit. Previously, first-order approximation (i.e. keeping only the first-order term in ) was used and hence AWI was studied for the condition ≫ . Here, by using the exact analytical expressions of coherences and populations, we have shown that AWI is maximum when is within the same order of probe field Rabi frequency irrespective of the choice of different ro-vibrational transitions in both the molecules. However, the shape of the gain profile and the maximum value of gain on the probe field and the absorption on coherent field depend on the choice of different ro-vibrational levels as the upper lasing levels. Effect of bidirectional pumping, homogeneous and inhomogeneous broadening on AWI process has been studied. By solving the density matrix equations numerically it has been shown that both the transient and the steady state AWI can be obtained and the numerical values of coherences and populations at large time are in very good agreement with exact analytical values in the steady state limit. It has been shown that in molecules AWI can be obtained on probe field of smaller wavelength than that of the coherent field which has not been observed in atoms so far.

  17. Cycling excitation process: An ultra efficient and quiet signal amplification mechanism in semiconductor

    Energy Technology Data Exchange (ETDEWEB)

    Liu, Yu-Hsin [Materials Science and Engineering Program, University of California, San Diego, 9500 Gilman Drive, La Jolla, California 92093-0418 (United States); Yan, Lujiang; Zhang, Alex Ce; Hall, David; Niaz, Iftikhar Ahmad; Zhou, Yuchun [Department of Electrical and Computer Engineering, University of California, San Diego, 9500 Gilman Drive, La Jolla, California 92093-0409 (United States); Sham, L. J. [Department of Physics, University of California, San Diego, 9500 Gilman Drive, La Jolla, California 92093 (United States); Lo, Yu-Hwa, E-mail: ylo@ucsd.edu [Materials Science and Engineering Program, University of California, San Diego, 9500 Gilman Drive, La Jolla, California 92093-0418 (United States); Department of Electrical and Computer Engineering, University of California, San Diego, 9500 Gilman Drive, La Jolla, California 92093-0409 (United States)

    2015-08-03

    Signal amplification, performed by transistor amplifiers with its merit rated by the efficiency and noise characteristics, is ubiquitous in all electronic systems. Because of transistor thermal noise, an intrinsic signal amplification mechanism, impact ionization was sought after to complement the limits of transistor amplifiers. However, due to the high operation voltage (30-200 V typically), low power efficiency, limited scalability, and, above all, rapidly increasing excess noise with amplification factor, impact ionization has been out of favor for most electronic systems except for a few applications such as avalanche photodetectors and single-photon Geiger detectors. Here, we report an internal signal amplification mechanism based on the principle of the phonon-assisted cycling excitation process (CEP). Si devices using this concept show ultrahigh gain, low operation voltage, CMOS compatibility, and, above all, quantum limit noise performance that is 30 times lower than devices using impact ionization. Established on a unique physical effect of attractive properties, CEP-based devices can potentially revolutionize the fields of semiconductor electronics.

  18. Electrochemical genosensor for the rapid detection of GMO using loop-mediated isothermal amplification.

    Science.gov (United States)

    Ahmed, Minhaz Uddin; Saito, Masato; Hossain, M Mosharraf; Rao, S Ramachandara; Furui, Satoshi; Hino, Akihiro; Takamura, Yuzuru; Takagi, Masahiro; Tamiya, Eiichi

    2009-05-01

    In this study, we are reporting for the first time an efficient, accurate and inexpensive rapid detection system which employs the integration of isothermal amplification and subsequent analysis of unpurified amplicons by an electrochemical system. In our experiments, loop-mediated isothermal amplification (LAMP) with its higher efficiency than PCR was performed at a constant temperature (65 degrees C). Amplification products were combined with a redox active molecule Hoechst 33258 [H33258, 2'-(4-hydroxyphenyl)-5-(4-methyl-1-piperazinyl)-2,5'-bi(1H-benzimidazole)] and analyzed by a DNA stick (DS) which is integrated with a disposable electrochemical printed (DEP) chip using linear sweep voltammetry (LSV). The DNA minor groove binding of the H33258 molecule causes a significant drop in the peak current intensity of the H33258 oxidation. The phenomenon of DNA binding induced by H33258, in addition to changes in the anodic current peak, was used to detect maize CBH 351 variety (StarLink). Since laborious probe immobilization was not required, and amplification and detection were performed on a single device, our biosensor eliminates potential cross-contamination. We believe that this type of sensor will have an unprecedented impact for environmental protection.

  19. All Three Rows of Outer Hair Cells Are Required for Cochlear Amplification

    Directory of Open Access Journals (Sweden)

    Michio Murakoshi

    2015-01-01

    Full Text Available In the mammalian auditory system, the three rows of outer hair cells (OHCs located in the cochlea are thought to increase the displacement amplitude of the organ of Corti. This cochlear amplification is thought to contribute to the high sensitivity, wide dynamic range, and sharp frequency selectivity of the hearing system. Recent studies have shown that traumatic stimuli, such as noise exposure and ototoxic acid, cause functional loss of OHCs in one, two, or all three rows. However, the degree of decrease in cochlear amplification caused by such functional losses remains unclear. In the present study, a finite element model of a cross section of the gerbil cochlea was constructed. Then, to determine effects of the functional losses of OHCs on the cochlear amplification, changes in the displacement amplitude of the basilar membrane (BM due to the functional losses of OHCs were calculated. Results showed that the displacement amplitude of the BM decreases significantly when a single row of OHCs lost its function, suggesting that all three rows of OHCs are required for cochlear amplification.

  20. Cycling excitation process: An ultra efficient and quiet signal amplification mechanism in semiconductor

    International Nuclear Information System (INIS)

    Signal amplification, performed by transistor amplifiers with its merit rated by the efficiency and noise characteristics, is ubiquitous in all electronic systems. Because of transistor thermal noise, an intrinsic signal amplification mechanism, impact ionization was sought after to complement the limits of transistor amplifiers. However, due to the high operation voltage (30-200 V typically), low power efficiency, limited scalability, and, above all, rapidly increasing excess noise with amplification factor, impact ionization has been out of favor for most electronic systems except for a few applications such as avalanche photodetectors and single-photon Geiger detectors. Here, we report an internal signal amplification mechanism based on the principle of the phonon-assisted cycling excitation process (CEP). Si devices using this concept show ultrahigh gain, low operation voltage, CMOS compatibility, and, above all, quantum limit noise performance that is 30 times lower than devices using impact ionization. Established on a unique physical effect of attractive properties, CEP-based devices can potentially revolutionize the fields of semiconductor electronics

  1. Label-free detection of real-time DNA amplification using a nanofluidic diffraction grating

    Science.gov (United States)

    Yasui, Takao; Ogawa, Kensuke; Kaji, Noritada; Nilsson, Mats; Ajiri, Taiga; Tokeshi, Manabu; Horiike, Yasuhiro; Baba, Yoshinobu

    2016-08-01

    Quantitative DNA amplification using fluorescence labeling has played an important role in the recent, rapid progress of basic medical and molecular biological research. Here we report a label-free detection of real-time DNA amplification using a nanofluidic diffraction grating. Our detection system observed intensity changes during DNA amplification of diffracted light derived from the passage of a laser beam through nanochannels embedded in a microchannel. Numerical simulations revealed that the diffracted light intensity change in the nanofluidic diffraction grating was attributed to the change of refractive index. We showed the first case reported to date for label-free detection of real-time DNA amplification, such as specific DNA sequences from tubercle bacilli (TB) and human papillomavirus (HPV). Since our developed system allows quantification of the initial concentration of amplified DNA molecules ranging from 1 fM to 1 pM, we expect that it will offer a new strategy for developing fundamental techniques of medical applications.

  2. Multi-channel temperature measurement amplification system. [solar heating systems

    Science.gov (United States)

    Currie, J. R. (Inventor)

    1981-01-01

    A number of differential outputs of thermocouples are sequentially amplified by a common amplifier. The amplified outputs are compared with a reference temperature signal in an offset correction amplifier, and a particularly poled output signal is provided when a differential output is of a discrete level compared with a reference temperature signal.

  3. Signal Amplification of Bioassay Using Zinc Nanomaterials

    Science.gov (United States)

    Cowles, Chad L.

    An emerging trend in the analytical detection sciences is the employment of nanomaterials for bioassay signal transduction to identify analytes critical to public health. These nanomaterials have been specifically investigated for applications which require identification of trace levels of cells, proteins, or other molecules that can have broad ranging impacts to human health in fields such as clinical diagnostics, environmental monitoring, food and drink control, and the prevention of bioterrorism. Oftentimes these nanoparticle-based signal transduction or amplification approaches offer distinct advantages over conventional methods such as increased sensitivity, rapidity, or stability. The biological application of nanoparticles however, does suffer from drawbacks that have limited more widespread adoption of these techniques. Some of these drawbacks are, high cost and toxicity, arduous synthesis methods, functionalization and bioconjugation challenges, and laboratory disposal and environmental hazard issues, all of which have impeded the progression of this technology in some way or another. This work aims at developing novel techniques that offer solutions to a number of these hurdles through the development of new nanoparticle-based signal transduction approaches and the description of a previously undescribed nanomaterial. Zinc-based nanomaterials offer the opportunity to overcome some of the limitations that are encountered when other nanomaterials are employed for bioassay signal transduction. On the other hand, the biological application of zinc nanomaterials has been difficult because in general their fluorescence is in the blue range and the reported quantum yields are usually too low for highly sensitive applications. The advantages of using zinc nanomaterials for biological applications, such as reduced toxicity, simple synthesis, low cost, and straightforward functionalization strategies contribute to the research interest in their application as

  4. HER2 overexpression and amplification is present in a subset of ovarian mucinous carcinomas and can be targeted with trastuzumab therapy

    Directory of Open Access Journals (Sweden)

    Swenerton Kenneth D

    2009-12-01

    Full Text Available Abstract Background The response rate of ovarian mucinous carcinomas to paclitaxel/carboplatin is low, prompting interest in targeted molecular therapies. We investigated HER2 expression and amplification, and the potential for trastuzumab therapy in this histologic subtype of ovarian cancer. Methods HER2 status was tested in 33 mucinous carcinomas and 16 mucinous borderline ovarian tumors (BOT. Five cases with documented recurrence and with tissue from the recurrence available for testing were analyzed to determine whether HER2 amplification status changed over time. Three prospectively identified recurrent mucinous ovarian carcinomas were assessed for HER2 amplification and patients received trastuzumab therapy with conventional chemotherapy. Results Amplification of HER2 was observed in 6/33 (18.2% mucinous carcinomas and 3/16 (18.8% BOT. HER2 amplification in primary mucinous carcinomas was not associated with an increased likelihood of recurrence. The prospectively identified recurrent mucinous carcinomas showed overexpression and amplification of HER2; one patient's tumor responded dramatically to trastuzumab in combination with conventional chemotherapy, while another patient experienced an isolated central nervous system recurrence after trastuzumab therapy. Conclusion HER2 amplification is relatively common in ovarian mucinous carcinomas (6/33, 18.2%, although not of prognostic significance. Trastuzumab therapy is a treatment option for patients with mucinous carcinoma when the tumor has HER2 amplification and overexpression.

  5. Magnetic field amplification in turbulent astrophysical plasmas

    CERN Document Server

    Federrath, Christoph

    2016-01-01

    Magnetic fields play an important role in astrophysical accretion discs, and in the interstellar and intergalactic medium. They drive jets, suppress fragmentation in star-forming clouds and can have a significant impact on the accretion rate of stars. However, the exact amplification mechanisms of cosmic magnetic fields remain relatively poorly understood. Here I start by reviewing recent advances in the numerical and theoretical modelling of the 'turbulent dynamo', which may explain the origin of galactic and inter-galactic magnetic fields. While dynamo action was previously investigated in great detail for incompressible plasmas, I here place particular emphasis on highly compressible astrophysical plasmas, which are characterised by strong density fluctuations and shocks, such as the interstellar medium. I find that dynamo action works not only in subsonic plasmas, but also in highly supersonic, compressible plasmas, as well as for low and high magnetic Prandtl numbers. I further present new numerical simu...

  6. Anisotropic metamaterials with simultaneous attenuation and amplification

    CERN Document Server

    Mackay, Tom G

    2015-01-01

    Anisotropic metamaterials that are neither wholly dissipative nor wholly active at a specific frequency are permitted by classical electromagnetic theory. Well-established formalisms for the homogenization of particulate composite materials indicate that such a metamaterial may be conceptualized quite simply as a random mixture of electrically small spheroidal particles of at least two different isotropic dielectric materials, one of which must be dissipative but the other active. The realization of this metametarial is influenced by the volume fraction, spatial distribution, particle shape and size, and the relative permittivities of the component materials. Metamaterials displaying both dissipation and amplification at the same frequency with more complicated linear as well as nonlinear constitutive properties are possible.

  7. Amplification sans bruit d'images optiques

    Science.gov (United States)

    Gigan, S.; Delaubert, V.; Lopez, L.; Treps, N.; Maitre, A.; Fabre, C.

    2004-11-01

    Nous utilisons un Oscillateur Paramétrique Optique (OPO) pompé sous le seuil dans le but d'amplifier une image multimode transverse sans dégradation du rapport signal à bruit. Le dispositif expérimental met en œuvre un OPO de type II triplement résonant et semi-confocal pour le faisceau amplifié. L'existence d'effets quantiques lors de l'amplification multimode dans un tel dispositif a été montrée expérimentalement. Plus généralement, ceci nous a amené à étudier les propriétés quantiques transverses des faisceaux lumineux amplifiés. Une telle étude peut trouver des applications non seulement en imagerie, mais également dans le traitement quantique de l'information.

  8. Strengthening weak value amplification with recycled photons

    CERN Document Server

    Dressel, Justin; Jordan, Andrew N; Graham, Trent M; Kwiat, Paul G

    2013-01-01

    We consider the use of cyclic weak measurements to improve the sensitivity of weak-value amplification precision measurement schemes. Previous weak-value experiments have used only a small fraction of events, while discarding the rest through the process of "post-selection". We extend this idea by considering recycling of events which are typically unused in a weak measurement. Here we treat a sequence of polarized laser pulses effectively trapped inside an interferometer using a Pockels cell and polarization optics. In principle, all photons can be post-selected, which will improve the measurement sensitivity. We first provide a qualitative argument for the expected improvements from recycling photons, followed by the exact result for the recycling of collimated beam pulses, and numerical calculations for diverging beams. We show that beam degradation effects can be mitigated via profile flipping or Zeno reshaping. The main advantage of such a recycling scheme is an effective power increase, while maintainin...

  9. Beyond the diffraction limit via optical amplification

    CERN Document Server

    Kellerer, Aglae N

    2016-01-01

    In a previous article we suggested a method to overcome the diffraction limit behind a telescope. We refer to theory and recent numerical simulations, and test whether it is indeed possible to use photon amplification to enhance the angular resolution of a telescope or a microscope beyond the diffraction limit. An essential addition is the proposal to select events with above-average ratio of stimulated to spontaneous photons. We find that the diffraction limit of a telescope is surpassed by a factor ten for an amplifier gain of 200, if the analysis is restricted to a tenth of the incoming astronomical photons. A gain of 70 is sufficient with a hundredth of the photons.

  10. Short-Pulse Amplification by Strongly-Coupled Brillouin Scattering

    CERN Document Server

    Edwards, Matthew R; Mikhailova, Julia M; Fisch, Nathaniel J

    2016-01-01

    We examine the feasibility of strongly-coupled stimulated Brillouin scattering as a mechanism for the plasma-based amplification of sub-picosecond pulses. In particular, we use fluid theory and particle-in-cell simulations to compare the relative advantages of Raman and Brillouin amplification over a broad range of achievable parameters.

  11. A Theoretical Evaluation of Optical Parametric Amplification in BBO Crystal

    Institute of Scientific and Technical Information of China (English)

    邵敏; 薛绍林; 林尊琪

    2005-01-01

    The noncollinear optical parametric amplification in BBO crystal is theoretically investigated. The phase matching angle, gain bandwidth, optimal noncollinear angle and conversion efficiency for both type-Ⅰ and type-Ⅱ BBO are simulated. The numerical simulation results are important to the practical optical parametric amplification experiments with BBO crystal.

  12. Recent progress in the development of pulse compression gratings

    Directory of Open Access Journals (Sweden)

    Hocquet S.

    2013-11-01

    Full Text Available The PETAL facility uses chirped pulse amplification (CPA technique. This system needs large pulse compression gratings that request damage threshold better than 4 J/cm2 in normal beam at 1.053 μm for 500 fs pulses. In this paper, we will show recent grating designs with either multilayer dielectrics or hybrid metal-dielectric structures. We have shown in previous works that damage threshold is driven by the enhancement of the near electric field inside the pillars of the grating. This was evidenced from a macroscopic point of view by means of laser damage testing. We will show that damage morphology during damage initiation at the scale of the grating groove is also consistent with this electric field dependence.

  13. Developments of new laser crystals doped with Yb ions

    International Nuclear Information System (INIS)

    In the development of laser crystal suitable for the ultra high peak power CPA (Chirped Pulse Amplification) laser system with a compact size, fluoride YLF laser crystals doped with Yb3+ rare earth ion have been grown by a vertical Bridgman method. To prevent opaque crystal growth, one of growth materials, YF3 and PbF2 as a scavenger were mixed and heated twice in the vacuum furnace to get rid of YOF. We also adjusted the temperature gradient at the crystal growth surface and a mixing rate of the initial materials of LiF and YF3. As a result, Yb doped YLF crystal was successfully grown with the optimum temperature gradient of 30 - 40degC/cm, and the rate of 60:40 for LiF:YF3 in mol-%. (author)

  14. Focal spot measurement in ultra-intense ultra-short pulse laser facility

    Science.gov (United States)

    Liu, Lanqin; Peng, Hansheng; Zhou, Kainan; Wang, Xiaodong; Wang, Xiao; Zeng, Xiaoming; Zhu, Qihua; Huang, Xiaojun; Wei, Xiaofeng; Ren, Huan

    2005-06-01

    A peak power of 286-TW Ti:sapphire laser facility referred to as SILEX-I was successfully built at China Academy of Engineering Physics, for a pulse duration of 30 fs in a three-stage Ti:sapphire amplifier chain based on chirped-pulse amplification. The beam have a wavefront distortion of 0.63μm PV and 0.09μm RMS, and the focal spot with an f/2.2 OAP is 5.7μm, to our knowledge, this is the best far field obtained for high-power ultra-short pulse laser systems with no deformable mirror wavefront correction. The peak focused intensity of ~1021W /cm2 were expected.

  15. 130-W picosecond green laser based on a frequency-doubled hybrid cryogenic Yb:YAG amplifier.

    Science.gov (United States)

    Hong, Kyung-Han; Lai, Chien-Jen; Siddiqui, Aleem; Kärtner, Franz X

    2009-09-14

    130-W average-power picosecond green laser pulses at 514.5 nm are generated from a frequency-doubled hybrid cryogenic Yb:YAG laser. A second-harmonic conversion efficiency of 54% is achieved with a 15-mm-long noncritically phase-matched lithium triborate (LBO) crystal from a 240-W 8-ps 78-MHz pulse train at 1029 nm. The high-average-power hybrid laser system consists of a picosecond fiber chirped-pulse amplification seed source and a cryogenically-cooled double-pass Yb:YAG amplifier. The M(2) value of 2.7, measured at 77 W of second-harmonic power, demonstrates a good focusing quality. A thermal analysis shows that the longitudinal temperature gradient can be the main limiting factor in the second-harmonic efficiency. To our best knowledge, this is the highest-average-power green laser source generating picosecond pulses. PMID:19770908

  16. Ultrahigh-intensity laser: physics of the extreme on a tabletop

    Energy Technology Data Exchange (ETDEWEB)

    Mourou, G.A.; Barty, C.P.; Perry, M.D.

    1997-10-10

    This paper reviews the development of ultrahigh-intensity laser technology from the early 1960`s to the present, explaining the obstacles to each increase in intensity and the technical means used to overcome them. These included the shortening of pulses, mode locking, and chirped pulse amplification (CPA). The particular technical advances that make CPA possible included the invention of matched pulse stretchers and compressors and the development of ultrabroadband gain media. The paper then discusses the generation of ultrashort pulses and their characteristics. It then moves on to the Petawatt laser, which incorporates the CPA technology. It then addresses the question of whether it is possible to forecast the ultimate peak power that can be achieved by a laser system of a given size. Applications of ultrahigh-intensity lasers in different physical regimes are discussed.

  17. The Quantum Theory of Optical Parametric Amplification

    Science.gov (United States)

    Hussain, N. A.

    Available from UMI in association with The British Library. Requires signed TDF. The aim of this thesis is to investigate the effect of parametric amplification on various forms of light. In particular we shall consider number and coherent states, but many of the calculations hold for those states whose operators satisfy the properties, = = ==0 e.g. chaotic light. The first chapter lays down the fundamental preliminaries necessary for our calculations and reviews linear amplifier theory. We consider the phase sensitive and insensitive forms of amplifiers modelling the former on the degenerate parametric amplifier and the latter on the non-degenerate and inverted population amplifiers. Chapter 2 deals with balanced homodyne detection of a narrow band coherent state before and after degenerate parametric amplification. In chapter 3 we consider a continuous mode number state produced by atomic emission and parametrically amplified using the formalism of Collett and Gardiner. We give general results for the output flux intensity and also consider the simpler case where the atomic decay rate is much smaller than the parametric cavity decay rate. Also we consider the degree of second order coherence using this simplified theory. Chapters 4 and 5 consider the double amplifier interferometer, using single and continuous mode theories, and enable us to determine the form of amplifier which produces the best visibility and hence lowest noise figures. The travelling-wave parametric amplifier is discussed in chapter 6 and is contrasted with the cavity parametric amplifier discussed in chapters 1 and 2. Finally we consider the much contemplated idea of using amplifiers to boost signals in fibre optic transmission lines using our model of the parametric amplifier and examining the degradation of the signal-to-noise ratio. We consider both coherent and squeezed inputs and our results hold for both cavity and travelling -wave amplifiers.

  18. Integrated Microfluidic Nucleic Acid Isolation, Isothermal Amplification, and Amplicon Quantification

    Directory of Open Access Journals (Sweden)

    Michael G. Mauk

    2015-10-01

    Full Text Available Microfluidic components and systems for rapid (<60 min, low-cost, convenient, field-deployable sequence-specific nucleic acid-based amplification tests (NAATs are described. A microfluidic point-of-care (POC diagnostics test to quantify HIV viral load from blood samples serves as a representative and instructive example to discuss the technical issues and capabilities of “lab on a chip” NAAT devices. A portable, miniaturized POC NAAT with performance comparable to conventional PCR (polymerase-chain reaction-based tests in clinical laboratories can be realized with a disposable, palm-sized, plastic microfluidic chip in which: (1 nucleic acids (NAs are extracted from relatively large (~mL volume sample lysates using an embedded porous silica glass fiber or cellulose binding phase (“membrane” to capture sample NAs in a flow-through, filtration mode; (2 NAs captured on the membrane are isothermally (~65 °C amplified; (3 amplicon production is monitored by real-time fluorescence detection, such as with a smartphone CCD camera serving as a low-cost detector; and (4 paraffin-encapsulated, lyophilized reagents for temperature-activated release are pre-stored in the chip. Limits of Detection (LOD better than 103 virons/sample can be achieved. A modified chip with conduits hosting a diffusion-mode amplification process provides a simple visual indicator to readily quantify sample NA template. In addition, a companion microfluidic device for extracting plasma from whole blood without a centrifuge, generating cell-free plasma for chip-based molecular diagnostics, is described. Extensions to a myriad of related applications including, for example, food testing, cancer screening, and insect genotyping are briefly surveyed.

  19. Efficient Spherical Wavefront Correction near the Focus for the 0.89 PW/29.0 fs Ti:Sapphire Laser Beam

    Institute of Scientific and Technical Information of China (English)

    REN Zhi-Jun; LIANG Xiao-Yan; YU Liang-Hong; LU Xiao-Ming; LENG Yu-Xin; LI Ru-Xin; XU Zhi-Zhan

    2011-01-01

    We demonstrate a new loop system of the spherical wavefront (SW) correction near the beam focus to effectively improve the focusability of 0.89 PW/29.0 fs Ti:sapphire chirped pulse amplification laser. After wavefront correction, the Strehl ratio is improved to reach 0.91, and the focal spot size using the fl4 off-axis parabola is reduced to 6.34 × 6.94μm2 (corresponding to 1.63 × 1.78 times diffraction limitation). With full peak power of 0.89 PW,the peak intensity of 2.59 × 1021 W/cm2 is obtained. The experimental results show that the SW correction scheme near the beam focus is comparatively simple, economic and high-efficient.%@@ We demonstrate a new loop system of the spherical wavefront (SW) correction near the beam focus to effectively improve the focusability of 0.89 PW/29.0 fs Ti:sapphire chirped pulse amplification laser.After wavefront correction, the Strehl ratio is improved to reach 0.91, and the focal spot size using the f/4 off-axis parabola is reduced to 6.34 x 6.94μm2 (corresponding to 1.63 x 1.78 times diffraction limitation).With full peak power of 0.89 PW, the peak intensity of 2.59 x 1021 W/cm2 is obtained.The experimental results show that the SW correction scheme near the beam focus is comparatively simple, economic and high-efficient.

  20. Impulse-Induced Optimum Signal Amplification in Scale-Free Networks

    CERN Document Server

    Martínez, Pedro J

    2015-01-01

    Optimizing information transmission across a network is an essential task for controlling and manipulating generic information-processing systems. Here, we show how topological amplification effects in scale-free networks of signaling devices are optimally enhanced when the $\\it{impulse}$ transmitted by periodic external signals (time integral over two consecutive zeros) is maximum. This is demonstrated theoretically by means of a star-like network of overdamped bistable systems subjected to $\\it{generic}$ zero-mean periodic signals, and confirmed numerically by simulations of scale-free networks of such systems. Our results show that the enhancer effect of increasing values of the signal's impulse is due to a correlative increase of the energy transmitted by the periodic signals, while it is found to be resonant-like with respect to the topology-induced amplification mechanism.

  1. Thalamic amplification of sensory input in experimental diabetes.

    Science.gov (United States)

    Freeman, Oliver J; Evans, Mathew H; Cooper, Garth J S; Petersen, Rasmus S; Gardiner, Natalie J

    2016-07-01

    Diabetic neuropathy is a common, and often debilitating, secondary complication of diabetes mellitus. As pain, hypersensitivity and paraesthesias present in a distal-proximal distribution, symptoms are generally believed to originate from damaged afferents within the peripheral nervous system. Increasing evidence suggests altered processing within the central nervous system in diabetic neuropathy contributes towards somatosensory dysfunction, but whether the accurate coding and relay of peripherally encoded information through the central nervous system is altered in diabetes is not understood. Here, we applied the strengths of the rodent whisker-barrel system to study primary afferent-thalamic processing in diabetic neuropathy. We found that neurons in the thalamic ventral posteromedial nucleus from rats with experimental diabetic neuropathy showed increased firing to precisely graded, multidirectional whisker deflection compared to non-diabetic rats. This thalamic hyperactivity occurred without any overt primary afferent dysfunction, as recordings from the trigeminal ganglion showed these primary afferents to be unaffected by diabetes. These findings suggest that central amplification can substantially transform ascending sensory input in diabetes, even in the absence of a barrage of ectopic primary afferent activity. PMID:27152754

  2. Establishment of a 15 Loci Multiplex Amplification System and the Genetic Poly-morphism in Xinjiang Uygur Population%15个基因座复合扩增体系的建立及新疆维吾尔族遗传多态性

    Institute of Scientific and Technical Information of China (English)

    桂娟; 刘海渤; 廖琴香; 徐旭; 鲁涤; 袁丽

    2015-01-01

    Objective To develop a five fluorescence-labeled multiplex amplification system for 15 loci and study genetic polymorphism in Xinjiang Uygur population. Methods The STR loci were screened. The alleles were named according to the number of repeats by sequencing. The sensitivity, species specificity, identity and stability of the five fluorescence-labeled multiplex amplification system for the 15 loci were all tested. Then, the genetic polymorphism was analyzed in Xinjiang Uygur population and compared with other ethnic groups including Xizang Tibetan, Xiuyan Manchu, and Guangzhou Han pop-ulation. Results The 15 loci multiplex amplification system was established. The sensitivity was 0.3 ng with good species specificity, identity and stability. The distributions of genotype for 13 STR loci in Uygur population were in accordance with Hardy-Weinberg equilibrium with no genetic linkage between these loci. Most loci showed statistically significant among different populations. Conclusion The estab-lished system has application value in forensic evidence. The 13 STR loci in Uygur population have high polymorphisms to be the supplements to the existing loci.%目的:建立15个基因座五色荧光复合扩增体系,并调查新疆维吾尔族的遗传多态性。方法筛选STR 基因座,等位基因测序后按照重复序列重复次数命名,对建立的15个基因座五色荧光复合扩增体系进行灵敏度、种属特异性、同一性及稳定性检测,对新疆维吾尔族群体进行遗传多态性分析,与西藏藏族、岫岩满族、广州汉族进行群体间比较。结果建立了15个基因座复合扩增体系,检测灵敏度为0.3 ng,具有良好的种属特异性、同一性和稳定性。新疆维吾尔族13个常染色体 STR 基因座的基因频率分布符合Hardy-Weinberg 平衡,无连锁不平衡现象,大部分基因座在群体间差异具有统计学意义。结论建立的体系具有法医物证学应用价值,13

  3. Mechanism of Gene Amplification via Yeast Autonomously Replicating Sequences

    Directory of Open Access Journals (Sweden)

    Shelly Sehgal

    2015-01-01

    Full Text Available The present investigation was aimed at understanding the molecular mechanism of gene amplification. Interplay of fragile sites in promoting gene amplification was also elucidated. The amplification promoting sequences were chosen from the Saccharomyces cerevisiae ARS, 5S rRNA regions of Plantago ovata and P. lagopus, proposed sites of replication pausing at Ste20 gene locus of S. cerevisiae, and the bend DNA sequences within fragile site FRA11A in humans. The gene amplification assays showed that plasmid bearing APS from yeast and human beings led to enhanced protein concentration as compared to the wild type. Both the in silico and in vitro analyses were pointed out at the strong bending potential of these APS. In addition, high mitotic stability and presence of TTTT repeats and SAR amongst these sequences encourage gene amplification. Phylogenetic analysis of S. cerevisiae ARS was also conducted. The combinatorial power of different aspects of APS analyzed in the present investigation was harnessed to reach a consensus about the factors which stimulate gene expression, in presence of these sequences. It was concluded that the mechanism of gene amplification was that AT rich tracts present in fragile sites of yeast serve as binding sites for MAR/SAR and DNA unwinding elements. The DNA protein interactions necessary for ORC activation are facilitated by DNA bending. These specific bindings at ORC promote repeated rounds of DNA replication leading to gene amplification.

  4. Amplification of the 20q chromosomal arm occurs early in tumorigenic transformation and may initiate cancer.

    Directory of Open Access Journals (Sweden)

    Yuval Tabach

    Full Text Available Duplication of chromosomal arm 20q occurs in prostate, cervical, colon, gastric, bladder, melanoma, pancreas and breast cancer, suggesting that 20q amplification may play a causal role in tumorigenesis. According to an alternative view, chromosomal imbalance is mainly a common side effect of cancer progression. To test whether a specific genomic aberration might serve as a cancer initiating event, we established an in vitro system that models the evolutionary process of early stages of prostate tumor formation; normal prostate cells were immortalized by the over-expression of human telomerase catalytic subunit hTERT, and cultured for 650 days till several transformation hallmarks were observed. Gene expression patterns were measured and chromosomal aberrations were monitored by spectral karyotype analysis at different times. Several chromosomal aberrations, in particular duplication of chromosomal arm 20q, occurred early in the process and were fixed in the cell populations, while other aberrations became extinct shortly after their appearance. A wide range of bioinformatic tools, applied to our data and to data from several cancer databases, revealed that spontaneous 20q amplification can promote cancer initiation. Our computational model suggests that 20q amplification induced deregulation of several specific cancer-related pathways including the MAPK pathway, the p53 pathway and Polycomb group factors. In addition, activation of Myc, AML, B-Catenin and the ETS family transcription factors was identified as an important step in cancer development driven by 20q amplification. Finally we identified 13 "cancer initiating genes", located on 20q13, which were significantly over-expressed in many tumors, with expression levels correlated with tumor grade and outcome suggesting that these genes induce the malignant process upon 20q amplification.

  5. Surface air temperature variability and trends in the Arctic: new amplification assessment and regionalisation

    Directory of Open Access Journals (Sweden)

    Ola M. Johannessen

    2016-05-01

    Full Text Available Arctic amplification of temperature change is theorised to be an important feature of the Earth's climate system. For observational assessment and understanding of mechanisms of this amplification, which remain uncertain, thorough and detailed analyses of surface air temperature (SAT variability and trends in the Arctic are needed. Here we present an analysis of Arctic SAT variability in comparison with mid-latitudes and the Northern Hemisphere (NH, based on an advanced SAT dataset – NansenSAT. We define an index for the Arctic amplification as the ratio between absolute values of the Arctic (65–90°N and NH 30-yr running linear SAT trends. It is demonstrated that the temperature amplification in the Arctic is characteristic not only for the recent warming but also the early 20th century warming (ETCW and subsequent cooling. The amplification appears to be weaker during the recent warming than in the ETCW, simply because the index values reflect the more pervasive nature of the recent warming that reflects the background of anthropogenic global warming. We also produced a new Arctic regionalisation created from hierarchical cluster analysis, which identifies six major natural regions in the Arctic that reflect SAT variability. Statistical comparison with several climate indices shows that the Atlantic Multidecadal Oscillation (AMO is the mode of variability that is most significantly associated with the amplified warming–cooling in the Arctic, with a stronger correlation during the ETCW and recent warming than during the intermediate period. Regionally, differences are identified in terms of annual and seasonal rates of change and in their correlations with modes of variability.

  6. External and semi-internal controls for PCR amplification of homologous sequences in mixed templates.

    Science.gov (United States)

    Kalle, Elena; Gulevich, Alexander; Rensing, Christopher

    2013-11-01

    In a mixed template, the presence of homologous target DNA sequences creates environments that almost inevitably give rise to artifacts and biases during PCR. Heteroduplexes, chimeras, and skewed template-to-product ratios are the exclusive attributes of mixed template PCR and never occur in a single template assay. Yet, multi-template PCR has been used without appropriate attention to quality control and assay validation, in spite of the fact that such practice diminishes the reliability of results. External and internal amplification controls became obligatory elements of good laboratory practice in different PCR assays. We propose the inclusion of an analogous approach as a quality control system for multi-template PCR applications. The amplification controls must take into account the characteristics of multi-template PCR and be able to effectively monitor particular assay performance. This study demonstrated the efficiency of a model mixed template as an adequate external amplification control for a particular PCR application. The conditions of multi-template PCR do not allow implementation of a classic internal control; therefore we developed a convenient semi-internal control as an acceptable alternative. In order to evaluate the effects of inhibitors, a model multi-template mix was amplified in a mixture with DNAse-treated sample. Semi-internal control allowed establishment of intervals for robust PCR performance for different samples, thus enabling correct comparison of the samples. The complexity of the external and semi-internal amplification controls must be comparable with the assumed complexity of the samples. We also emphasize that amplification controls should be applied in multi-template PCR regardless of the post-assay method used to analyze products.

  7. Amplification of Spin Waves by Thermal Spin-Transfer Torque

    Science.gov (United States)

    Padrón-Hernández, E.; Azevedo, A.; Rezende, S. M.

    2011-11-01

    We observe amplification of spin-wave packets propagating along a film of single-crystal yttrium iron garnet subject to a transverse temperature gradient. The spin waves are excited and detected with standard techniques used in magnetostatic microwave delay lines in the 1-2 GHz frequency range. The amplification is attributed to the action of a thermal spin-transfer torque acting on the magnetization that opposes the relaxation and which is created by spin currents generated through the spin-Seebeck effect. The experimental data are interpreted with a spin-wave model that gives an amplification gain in very good agreement with the data.

  8. Amplification and chromosomal dispersion of human endogenous retroviral sequences

    International Nuclear Information System (INIS)

    Endogenous retroviral sequences have undergone amplification events involving both viral and flanking cellular sequences. The authors cloned members of an amplified family of full-length endogenous retroviral sequences. Genomic blotting, employing a flanking cellular DNA probe derived from a member of this family, revealed a similar array of reactive bands in both humans and chimpanzees, indicating that an amplification event involving retroviral and associated cellular DNA sequences occurred before the evolutionary separation of these two primates. Southern analyses of restricted somatic cell hybrid DNA preparations suggested that endogenous retroviral segments are widely dispersed in the human genome and that amplification and dispersion events may be linked

  9. PCR amplification on microarrays of gel immobilized oligonucleotides

    Science.gov (United States)

    Strizhkov, Boris; Tillib, Sergei; Mikhailovich, Vladimir; Mirzabekov, Andrei

    2003-11-04

    The invention relates two general methods for performing PCR amplification, combined with the detection and analysis of the PCR products on a microchip. In the first method, the amplification occurs both outside and within a plurality of gel pads on a microchip, with at least one oligonucleotide primer immobilized in a gel pad. In the second method, PCR amplification also takes place within gel pads on a microchip, but the pads are surrounded by a hydrophobic liquid such as that which separates the individual gel pads into environments which resemble micro-miniaturized test tubes.

  10. Signal Amplification Technique (SAT): an approach for improving resolution and reducing image noise in computed tomography

    International Nuclear Information System (INIS)

    Spatial resolution improvements in computed tomography (CT) have been limited by the large and unique error propagation properties of this technique. The desire to provide maximum image resolution has resulted in the use of reconstruction filter functions designed to produce tomographic images with resolution as close as possible to the intrinsic detector resolution. Thus, many CT systems produce images with excessive noise with the system resolution determined by the detector resolution rather than the reconstruction algorithm. CT is a rigorous mathematical technique which applies an increasing amplification to increasing spatial frequencies in the measured data. This mathematical approach to spatial frequency amplification cannot distinguish between signal and noise and therefore both are amplified equally. We report here a method in which tomographic resolution is improved by using very small detectors to selectively amplify the signal and not noise. Thus, this approach is referred to as the signal amplification technique (SAT). SAT can provide dramatic improvements in image resolution without increases in statistical noise or dose because increases in the cutoff frequency of the reconstruction algorithm are not required to improve image resolution. Alternatively, in cases where image counts are low, such as in rapid dynamic or receptor studies, statistical noise can be reduced by lowering the cutoff frequency while still maintaining the best possible image resolution. A possible system design for a positron CT system with SAT is described

  11. Signal Amplification Technique (SAT): an approach for improving resolution and reducing image noise in computed tomography

    Energy Technology Data Exchange (ETDEWEB)

    Phelps, M.E.; Huang, S.C.; Hoffman, E.J.; Plummer, D.; Carson, R.

    1981-01-01

    Spatial resolution improvements in computed tomography (CT) have been limited by the large and unique error propagation properties of this technique. The desire to provide maximum image resolution has resulted in the use of reconstruction filter functions designed to produce tomographic images with resolution as close as possible to the intrinsic detector resolution. Thus, many CT systems produce images with excessive noise with the system resolution determined by the detector resolution rather than the reconstruction algorithm. CT is a rigorous mathematical technique which applies an increasing amplification to increasing spatial frequencies in the measured data. This mathematical approach to spatial frequency amplification cannot distinguish between signal and noise and therefore both are amplified equally. We report here a method in which tomographic resolution is improved by using very small detectors to selectively amplify the signal and not noise. Thus, this approach is referred to as the signal amplification technique (SAT). SAT can provide dramatic improvements in image resolution without increases in statistical noise or dose because increases in the cutoff frequency of the reconstruction algorithm are not required to improve image resolution. Alternatively, in cases where image counts are low, such as in rapid dynamic or receptor studies, statistical noise can be reduced by lowering the cutoff frequency while still maintaining the best possible image resolution. A possible system design for a positron CT system with SAT is described.

  12. Small Sample Whole-Genome Amplification

    Energy Technology Data Exchange (ETDEWEB)

    Hara, C A; Nguyen, C P; Wheeler, E K; Sorensen, K J; Arroyo, E S; Vrankovich, G P; Christian, A T

    2005-09-20

    Many challenges arise when trying to amplify and analyze human samples collected in the field due to limitations in sample quantity, and contamination of the starting material. Tests such as DNA fingerprinting and mitochondrial typing require a certain sample size and are carried out in large volume reactions; in cases where insufficient sample is present whole genome amplification (WGA) can be used. WGA allows very small quantities of DNA to be amplified in a way that enables subsequent DNA-based tests to be performed. A limiting step to WGA is sample preparation. To minimize the necessary sample size, we have developed two modifications of WGA: the first allows for an increase in amplified product from small, nanoscale, purified samples with the use of carrier DNA while the second is a single-step method for cleaning and amplifying samples all in one column. Conventional DNA cleanup involves binding the DNA to silica, washing away impurities, and then releasing the DNA for subsequent testing. We have eliminated losses associated with incomplete sample release, thereby decreasing the required amount of starting template for DNA testing. Both techniques address the limitations of sample size by providing ample copies of genomic samples. Carrier DNA, included in our WGA reactions, can be used when amplifying samples with the standard purification method, or can be used in conjunction with our single-step DNA purification technique to potentially further decrease the amount of starting sample necessary for future forensic DNA-based assays.

  13. Local Runup Amplification By Resonant Wave Interactions

    CERN Document Server

    Stefanakis, Themistoklis; Dutykh, Denys

    2011-01-01

    Until now the analysis of long wave runup on a plane beach has been focused on finding its maximum value, failing to capture the existence of resonant regimes. One-dimensional numerical simulations in the framework of the Nonlinear Shallow Water Equations (NSWE) are used to investigate the Boundary Value Problem (BVP) for plane and non-trivial beaches. Monochromatic waves, as well as virtual wave-gage recordings from real tsunami simulations, are used as forcing conditions to the BVP. Resonant phenomena between the incident wavelength and the beach slope are found to occur, which result in enhanced runup of non-leading waves. The evolution of energy reveals the existence of a quasi-periodic state for the case of sinusoidal waves, the energy level of which, as well as the time required to reach that state, depend on the incident wavelength for a given beach slope. Dispersion is found to slightly reduce the value of maximum runup, but not to change the overall picture. Runup amplification occurs for both leadin...

  14. AGAPE Andromeda Gravitational Amplification Pixel Experiment

    CERN Document Server

    Ansari, R; Baillon, Paul; Bouquet, A; Coupinot, G; Coutures, C; Ghesquière, C; Giraud-Héraud, Yannick; Gondolo, P; Hecquet, J; Kaplan, J; Le Du, Y; Melchior, A L; Moniez, M; Picat, J P; Soucail, G

    1999-01-01

    The aim of the AGAPE (Andromeda Gravitational Amplification Pixel Experiment), experiment which has been first proposed in June 1992 is to examine the distribution of massive astrophysical compact halo objects ((MACHO's) which possibly are in the galactic haloes and which could account for the missing dark matter. Those objects have a mass which is a fraction of solar mass and could be detected by gravitational microlensing: the light of a star is amplified when a MACHO is crossing its line of sight from the earth. This technique has been proposed by Paczy\\'nski in 1986. The AGAPE collaboration applies this technique in an original way by using, as target stars, the stars of another galaxy without resolving them. The recent progresses in photometry with CCD allow now to see tiny variations of the surface brightness of a galaxy like M~31. Those tiny variations can be the result of a single microlensing event on the background stars contributing to the surface brightness. The AGAPE collaboration has now cumulat...

  15. Amplification of Chirality through Self-Replication of Micellar Aggregates in Water

    KAUST Repository

    Bukhryakov, Konstantin V.

    2015-03-17

    We describe a system in which the self-replication of micellar aggregates results in a spontaneous amplification of chirality in the reaction products. In this system, amphiphiles are synthesized from two "clickable" fragments: a water-soluble "head" and a hydrophobic "tail". Under biphasic conditions, the reaction is autocatalytic, as aggregates facilitate the transfer of hydrophobic molecules to the aqueous phase. When chiral, partially enantioenriched surfactant heads are used, a strong nonlinear induction of chirality in the reaction products is observed. Preseeding the reaction mixture with an amphiphile of one chirality results in the amplification of this product and therefore information transfer between generations of self-replicating aggregates. Because our amphiphiles are capable of catalysis, information transfer, and self-assembly into bounded structures, they present a plausible model for prenucleic acid "lipid world" entities. © 2015 American Chemical Society.

  16. Functional integration of PCR amplification and capillary electrophoresis in a microfabricated DNA analysis device.

    Science.gov (United States)

    Woolley, A T; Hadley, D; Landre, P; deMello, A J; Mathies, R A; Northrup, M A

    1996-12-01

    Microfabricated silicon PCR reactors and glass capillary electrophoresis (CE) chips have been successfully coupled to form an integrated DNA analysis system. This construct combines the rapid thermal cycling capabilities of microfabricated PCR devices (10 degrees C/s heating, 2.5 degrees C/s cooling) with the high-speed (Real-time monitoring of PCR target amplification in these integrated PCR-CE devices is also feasible. Amplification of the beta-globin target as a function of cycle number was directly monitored for two different reactions starting with 4 x 10(7) and 4 x 10(5) copies of DNA template. This work establishes the feasibility of performing high-speed DNA analyses in microfabricated integrated fluidic systems. PMID:8946790

  17. Entanglement, EPR correlations and mesoscopic quantum superposition by the high-gain quantum injected parametric amplification

    OpenAIRE

    Caminati, Marco; De Martini, Francesco; Perris, Riccardo; Sciarrino, Fabio; Secondi, Veronica

    2006-01-01

    We investigate the multiparticle quantum superposition and the persistence of multipartite entanglement of the quantum superposition generated by the quantum injected high-gain optical parametric amplification of a single photon. The physical configuration based on the optimal universal quantum cloning has been adopted to investigate how the entanglement and the quantum coherence of the system persists for large values of the nonlinear parametric gain g.

  18. Miniaturized PCR chips for nucleic acid amplification and analysis: latest advances and future trends

    OpenAIRE

    Zhang, Chunsun; Xing, Da

    2007-01-01

    The possibility of performing fast and small-volume nucleic acid amplification and analysis on a single chip has attracted great interest. Devices based on this idea, referred to as micro total analysis, microfluidic analysis, or simply ‘Lab on a chip’ systems, have witnessed steady advances over the last several years. Here, we summarize recent research on chip substrates, surface treatments, PCR reaction volume and speed, architecture, approaches to eliminating cross-contamination and contr...

  19. The identification of zones of amplification of disruptions in network supply chains of metallurgic products

    Directory of Open Access Journals (Sweden)

    M. Kramarz

    2015-01-01

    Full Text Available An increase in the number of participants in a supply chain and network relations results in an increase in the complexity of the entire logistic and production system. Consequently, there appear additional potential sources of disruptions in material flows. The aim of the research presented in the article is to identify the zones of amplification of disruptions in network supply chains of metallurgic products.

  20. Generation and parametric amplification of femtosecond radiation up to terawatt power in the mid-infrared

    Science.gov (United States)

    Trunov, V. I.; Frolov, S. A.; Pestryakov, E. V.

    2015-11-01

    Nonlinear optical schemes for generation of terawatt femtosecond pulses in the range of 2-10 μm using multiterawatt laser radiation of the two-channel system created in the ILP SB RAS are presented and discussed. It is shown that the use of large aperture LBO crystals and AgGaGeS4 for difference frequency generation and parametric amplification enables to generate a wideband radiation in the range of 2-10 μm.

  1. Entwicklung und Aufbau eines sub-50-fs-Spektrometers zur Untersuchung der ultraschnellen molekularen Dynamik von Chlordioxid und Schwefelhexafluorid

    OpenAIRE

    Dühr, Oliver

    2010-01-01

    In this thesis the experimental results on ultrafast excitation of molecular structures (chlorine dioxide, sulfur hexafluoride) are presented. The core component of the setup is a 1 kHz 32 fs Ti:Sapphire based laser with 2.5 mJ energy based on chirped pulse amplification technique. 15 fs pulses are stretched by a factor of 10000 and energy enhanced by a chain of regenative and multipass amplification. Compression is done by a simple grating pair. The necessit...

  2. Generation of recombinant pestiviruses using a full genome amplification strategy

    DEFF Research Database (Denmark)

    Rasmussen, Thomas Bruun; Reimann, Ilona; Uttenthal, Åse;

    Aim Complete genome amplification of viral RNA provides a new tool for generation of modified pestiviruses. We have recently reported a full genome amplification strategy for direct recovery of infectious pestivirus (Rasmussen et al., 2008). This comprised rescue of BDV strain “Gifhorn” from a full......-length RT-PCR amplicon demonstrating that long RT-PCR can be used for direct generation of an infectious pestivirus. The strategy is not limited to amplification of BDV “Gifhorn”, but can be further utilized for amplification of a diverse selection of pestivirus strains and for the generation of modified...... of an existing infectious clone. The long RT-PCR strategy significantly simplifies and streamlines the workflow and facilitates generation of new modified pestiviruses and also allows direct full-length sequence analysis. References Rasmussen et al., J. Virol. Methods 149(2), 330 (2008)....

  3. Magnetic Field Amplification During the Common Envelope Phase

    CERN Document Server

    Ohlmann, Sebastian T; Pakmor, Ruediger; Springel, Volker; Mueller, Ewald

    2016-01-01

    During the common envelope (CE) phase, a giant star in a binary system overflows its Roche lobe and unstable mass transfer leads to a spiral-in of the companion, resulting in a close binary system or in a merger of the stellar cores. Dynamo processes during the CE phase have been proposed as a mechanism to generate magnetic fields that are important for forming magnetic white dwarfs (MWDs) and for shaping planetary nebulae. Here, we present the first magnetohydrodynamics simulations of the dynamical spiral-in during a CE phase. We find that magnetic fields are strongly amplified in the accretion stream around the $1M_\\odot$ companion as it spirals into the envelope of a $2M_\\odot$ RG. This leads to field strengths of 10 to 100 kG throughout the envelope after 120 d. The magnetic field amplification is consistent with being driven by the magnetorotational instability. The field strengths reached in our simulation make the magnetic field interesting for diagnostic purposes, but they are dynamically irrelevant. ...

  4. Signal amplification in an agent-based herding model

    CERN Document Server

    Carro, Adrián; Miguel, Maxi San

    2013-01-01

    A growing part of the behavioral finance literature has addressed some of the stylized facts of financial time series as macroscopic patterns emerging from herding interactions among groups of agents with heterogeneous trading strategies and a limited rationality. We extend a stochastic herding formalism introduced for the modeling of decision making among financial agents, in order to take also into account an external influence. In particular, we study the amplification of an external signal imposed upon the agents by a mechanism of resonance. This signal can be interpreted as an advertising or a public perception in favor or against one of the two possible trading behaviors, thus periodically breaking the symmetry of the system and acting as a continuously varying exogenous shock. The conditions for the ensemble of agents to more accurately follow the periodicity of the signal are studied, finding a maximum in the response of the system for a given range of values of both the noise and the frequency of the...

  5. Magnetic field amplification during the common envelope phase

    Science.gov (United States)

    Ohlmann, Sebastian T.; Röpke, Friedrich K.; Pakmor, Rüdiger; Springel, Volker; Müller, Ewald

    2016-10-01

    During the common envelope (CE) phase, a giant star in a binary system overflows its Roche lobe and unstable mass transfer leads to a spiral-in of the companion, resulting in a close binary system or in a merger of the stellar cores. Dynamo processes during the CE phase have been proposed as a mechanism to generate magnetic fields that are important for forming magnetic white dwarfs (MWDs) and for shaping planetary nebulae. Here, we present the first magnetohydrodynamics simulations of the dynamical spiral-in during a CE phase. We find that magnetic fields are strongly amplified in the accretion stream around the 1 M⊙ companion as it spirals into the envelope of a 2 M⊙ RG. This leads to field strengths of 10-100 kG throughout the envelope after 120 d. The magnetic field amplification is consistent with being driven by the magnetorotational instability. The field strengths reached in our simulation make the magnetic field interesting for diagnostic purposes, but they are dynamically irrelevant. They are also too small to explain the formation of the highest fields found in MWDs, but may be relevant for luminous red novae, and detecting magnetic fields in these events would support the scenario as proposed here.

  6. Fingerprinting Internet DNS Amplification DDoS Activities

    OpenAIRE

    Fachkha, Claude; Bou-Harb, Elias; Debbabi, Mourad

    2013-01-01

    This work proposes a novel approach to infer and characterize Internet-scale DNS amplification DDoS attacks by leveraging the darknet space. Complementary to the pioneer work on inferring Distributed Denial of Service (DDoS) activities using darknet, this work shows that we can extract DDoS activities without relying on backscattered analysis. The aim of this work is to extract cyber security intelligence related to DNS Amplification DDoS activities such as detection period, attack duration, ...

  7. Measurement-Based Noiseless Linear Amplification for Quantum Communication

    OpenAIRE

    Chrzanowski, Helen M.; Walk, Nathan; Assad, Syed M.; Janousek, Jiri; Hosseini, Sara; Ralph, Timothy C.; Symul, Thomas; Lam, Ping Koy

    2014-01-01

    Entanglement distillation is an indispensable ingredient in extended quantum communication networks. Distillation protocols are necessarily non-deterministic and require advanced experimental techniques such as noiseless amplification. Recently it was shown that the benefits of noiseless amplification could be extracted by performing a post-selective filtering of the measurement record to improve the performance of quantum key distribution. We apply this protocol to entanglement degraded by t...

  8. On the amplification of acoustic phonons in carbon nanotube

    OpenAIRE

    Dompreh, K. A.; Mensah, N. G.; Sakyi-Arthur, D.; Mensah, S. Y.

    2016-01-01

    We present a theoretical study of acoustic phonons amplification in Carbon Nanotubes (CNT). The phenomenon is via Cerenkov emission (CE) of acoustic phonons using intraband transitions proposed by Mensah et. al.,~\\cite{1} in Semiconductor Superlattices (SSL) and confirmed in ~\\cite{2}. From this, an asymmetric graph of $\\Gamma^{CNT}$ on $\\frac{V_d}{V_s}$ and $\\Omega\\tau$ were obtained where amplification ($\\Gamma_{amp}^{CNT}$) $>>$ absorption ($\\Gamma_{abs}^{CNT}$). The ratio, $\\frac{\\vert \\G...

  9. Methods for microbial DNA extraction from soil for PCR amplification

    OpenAIRE

    Yeates C; Gillings, MR; Davison AD; Altavilla N; Veal DA

    1998-01-01

    Amplification of DNA from soil is often inhibited by co-purified contaminants. A rapid, inexpensive, large-scale DNA extraction method involving minimal purification has been developed that is applicable to various soil types (1). DNA is also suitable for PCR amplification using various DNA targets. DNA was extracted from 100g of soil using direct lysis with glass beads and SDS followed by potassium acetate precipitation, polyethylene glycol precipitation, phenol extraction and isopropanol pr...

  10. Controllable Amplification of Entanglement for Two Qutrits under Decoherence

    Institute of Scientific and Technical Information of China (English)

    ZHENG Qiang; XIE Xiao-Yao; ZHI Qi-Jun; REN Zhong-Zhou

    2011-01-01

    Entanglement dynamics of a two-qutrit Heisenberg spin chain with the external magnetic fields and DM interaction under the intrinsic decoherence is investigated. Depending on whether there is inhomogeneous magnetic field,the entanglement amplification, i.e. the phenomenon that the finally stable entanglement is bigger than that of the initial one, is found for one kind of initial states. The reasons for the controllable entanglement amplification are discussed.

  11. Resonant nonstationary amplification of polychromatic laser pulses and conical emission in an optically dense ensemble of neon metastable atoms

    International Nuclear Information System (INIS)

    Experimental and numerical investigation of single-beam and pump-probe interaction with a resonantly absorbing dense extended medium under strong and weak field-matter coupling is presented. Significant probe beam amplification and conical emission were observed. Under relatively weak pumping and high medium density, when the condition of strong coupling between field and resonant matter is fulfilled, the probe amplification spectrum has a form of spectral doublet. Stronger pumping leads to the appearance of a single peak of the probe beam amplification at the transition frequency. The greater probe intensity results in an asymmetrical transmission spectrum with amplification at the blue wing of the absorption line and attenuation at the red one. Under high medium density, a broadband of amplification appears. The theoretical model is based on the solution of the Maxwell-Bloch equations for a two-level system. Different types of probe transmission spectra obtained are attributed to complex dynamics of a coherent medium response to broadband polychromatic radiation of a multimode dye laser

  12. Problems encountered when defining Arctic amplification as a ratio.

    Science.gov (United States)

    Hind, Alistair; Zhang, Qiong; Brattström, Gudrun

    2016-01-01

    In climate change science the term 'Arctic amplification' has become synonymous with an estimation of the ratio of a change in Arctic temperatures compared with a broader reference change under the same period, usually in global temperatures. Here, it is shown that this definition of Arctic amplification comes with a suite of difficulties related to the statistical properties of the ratio estimator itself. Most problematic is the complexity of categorizing uncertainty in Arctic amplification when the global, or reference, change in temperature is close to 0 over a period of interest, in which case it may be impossible to set bounds on this uncertainty. An important conceptual distinction is made between the 'Ratio of Means' and 'Mean Ratio' approaches to defining a ratio estimate of Arctic amplification, as they do not only possess different uncertainty properties regarding the amplification factor, but are also demonstrated to ask different scientific questions. Uncertainty in the estimated range of the Arctic amplification factor using the latest global climate models and climate forcing scenarios is expanded upon and shown to be greater than previously demonstrated for future climate projections, particularly using forcing scenarios with lower concentrations of greenhouse gases. PMID:27461918

  13. Targeting MET Amplification as a New Oncogenic Driver

    Energy Technology Data Exchange (ETDEWEB)

    Kawakami, Hisato [Department of Medical Oncology, Kinki University Faculty of Medicine, 377-2 Ohno-higashi, Osaka-Sayama, Osaka 589-8511 (Japan); Okamoto, Isamu, E-mail: okamotoi@kokyu.med.kyushu-u.ac.jp [Department of Medical Oncology, Kinki University Faculty of Medicine, 377-2 Ohno-higashi, Osaka-Sayama, Osaka 589-8511 (Japan); Center for Clinical and Translational Research, Kyushu University Hospital, 3-1-1 Maidashi, Higashiku, Fukuoka 812-8582 (Japan); Okamoto, Wataru [Department of Medical Oncology, Kinki University Faculty of Medicine, 377-2 Ohno-higashi, Osaka-Sayama, Osaka 589-8511 (Japan); Division of Transrlational Research, Exploratory Oncology Research & Clinical Trial Center, National Cancer Center, 6-5-1 Kashiwanoha, Kashiwa, Chiba 277-8577 (Japan); Tanizaki, Junko [Department of Medical Oncology, Kinki University Faculty of Medicine, 377-2 Ohno-higashi, Osaka-Sayama, Osaka 589-8511 (Japan); Lowe Center for Thoracic Oncology, Dana-Farber Cancer Institute, HIM223, 450 Brookline Avenue, Boston, MA 02215 (United States); Nakagawa, Kazuhiko [Department of Medical Oncology, Kinki University Faculty of Medicine, 377-2 Ohno-higashi, Osaka-Sayama, Osaka 589-8511 (Japan); Nishio, Kazuto [Department of Genome Biology, Kinki University Faculty of Medicine, 377-2 Ohno-higashi, Osaka-Sayama, Osaka 589-8511 (Japan)

    2014-07-22

    Certain genetically defined cancers are dependent on a single overactive oncogene for their proliferation and survival, a phenomenon known as “oncogene addiction”. A new generation of drugs that selectively target such “driver oncogenes” manifests a clinical efficacy greater than that of conventional chemotherapy in appropriate genetically defined patients. MET is a proto-oncogene that encodes a receptor tyrosine kinase, and aberrant activation of MET signaling occurs in a subset of advanced cancers as result of various genetic alterations including gene amplification, polysomy, and gene mutation. Our preclinical studies have shown that inhibition of MET signaling either with the small-molecule MET inhibitor crizotinib or by RNA interference targeted to MET mRNA resulted in marked antitumor effects in cancer cell lines with MET amplification both in vitro and in vivo. Furthermore, patients with non-small cell lung cancer or gastric cancer positive for MET amplification have shown a pronounced clinical response to crizotinib. Accumulating preclinical and clinical evidence thus suggests that MET amplification is an “oncogenic driver” and therefore a valid target for treatment. However, the prevalence of MET amplification has not been fully determined, possibly in part because of the difficulty in evaluating gene amplification. In this review, we provide a rationale for targeting this genetic alteration in cancer therapy.

  14. Targeting MET Amplification as a New Oncogenic Driver

    Directory of Open Access Journals (Sweden)

    Hisato Kawakami

    2014-07-01

    Full Text Available Certain genetically defined cancers are dependent on a single overactive oncogene for their proliferation and survival, a phenomenon known as “oncogene addiction”. A new generation of drugs that selectively target such “driver oncogenes” manifests a clinical efficacy greater than that of conventional chemotherapy in appropriate genetically defined patients. MET is a proto-oncogene that encodes a receptor tyrosine kinase, and aberrant activation of MET signaling occurs in a subset of advanced cancers as result of various genetic alterations including gene amplification, polysomy, and gene mutation. Our preclinical studies have shown that inhibition of MET signaling either with the small-molecule MET inhibitor crizotinib or by RNA interference targeted to MET mRNA resulted in marked antitumor effects in cancer cell lines with MET amplification both in vitro and in vivo. Furthermore, patients with non-small cell lung cancer or gastric cancer positive for MET amplification have shown a pronounced clinical response to crizotinib. Accumulating preclinical and clinical evidence thus suggests that MET amplification is an “oncogenic driver” and therefore a valid target for treatment. However, the prevalence of MET amplification has not been fully determined, possibly in part because of the difficulty in evaluating gene amplification. In this review, we provide a rationale for targeting this genetic alteration in cancer therapy.

  15. Novel multifunction-integrated molecular beacon for the amplification detection of DNA hybridization based on primer/template-free isothermal polymerization.

    Science.gov (United States)

    Dong, Haiyan; Wu, Zai-Sheng; Xu, Jianguo; Ma, Ji; Zhang, Huijuan; Wang, Jie; Shen, Weiyu; Xie, Jingjing; Jia, Lee

    2015-10-15

    Molecular beacon (MB) is widely explored as a signaling probe in powerful biosensing systems, for example, enzyme-assisted strand displacement amplification (SDA)-based system. The existing polymerization-based amplification system is often composed of recognition element, primer, template and fluorescence reporter. To develop a new MB sensing system and simply the signal amplification design, we herein attempted to propose a multifunctional integrated MB (MI-MB) for the polymerization amplification detection of target DNA via introducing a G-rich fragment into the loop of MB without using any exogenous auxiliary oligonucleotide probe. Utilizing only one MI-MB probe, the p53 target gene could trigger the cycles of hybridization/polymerization/displacement, resulting in amplification of the target hybridization event. Thus, the p53 gene can be detected down to 5 × 10(-10)M with the linear response range from 5 × 10(-10)M to 4 × 10(-7)M. Using the MI-MB, we could readily discriminate the point mutation-contained p53 from the wild-type one. As a proof-of-concept study, owing to its simplicity and multifunction, including recognition, replication, amplification and signaling, the MI-MB exhibits the great potential for the development of different biosensors for various biomedical applications, especially, for early cancer diagnosis.

  16. Using multiplex PCR amplification and typing kits for the analysis of DNA evidence in a serial killer case.

    Science.gov (United States)

    Hochmeister, M N; Budowle, B; Eisenberg, A; Borer, U V; Dirnhofer, R

    1996-01-01

    Analysis of DNA evidence in a serial killer case was performed using the AmpliType HLA-DQ alpha-, AmpliType PM-, and the GenePrint STR Multiplex System PCR Amplification Kits. In addition, a sex typing procedure using the X-Y homologous gene amelogenin was carried out. DNA profiles from a single hair with attached sheath material, recovered from underneath the seat cover of the suspect's car seat were compared with DNA profiles derived from reference head hairs from a homicide victim. From the evidentiary sample only 9 ng of human DNA could be recovered. In a sample, where the quantity of DNA becomes a critical issue a powerful route is the simultaneous amplification of several loci (multiplex PCR). This is the first report where commercially available multiplex PCR amplification and typing kits have been introduced for the analysis of DNA evidence in a serial killer case and the analysis has been admitted in court.

  17. Absorption-Amplification Response with or Without Spontaneously Generated Coherence in a Coherent Four-Level Atomic Medium

    Institute of Scientific and Technical Information of China (English)

    LI Jia-Hua; YANG Wen-Xing; PENG Ju-Cun

    2004-01-01

    We discuss and analyze the absorption-amplification properties of a weak probe field in a typical four-level atomic system in the presence of an additional coherence term, the spontaneously generated coherence term. Theinfluences of the spontaneously generated coherence and a coherent pump field on the probe absorption (amplification)are investigated in detail. We show that the absorption of such a weak probe field can be dramatically enhanced dueto the presence of the spontaneously generated coherence. At the same time, the probe-absorption profile exhibitsthe double-peak structure and the probe-absorption peak gradually decreases as the pump intensity increases. On thecontrary, the amplification of such a weak probe field near the line center of the probe transition can be achieved byadjusting the coherent pump field intensity in the absence of the spontaneously generated coherence.

  18. Absorption-Amplification Response with or Without Spontaneously Generated Coherence in a Coherent Four-Level Atomic Medium

    Institute of Scientific and Technical Information of China (English)

    LIJia-Hua; YANGWen-Xing; PENGJu-Cun

    2004-01-01

    We discuss and analyze the absorption-amplification properties of a weak probe field in a typical fourlevel atomic system in the presence of an additional coherence term, the spontaneously generated coherence term. The influences of the spontaneously generated coherence and a coherent pump field on the probe absorption (amplification) are investigated in detail. We show that the absorption of such a weak probe field can be dramatically enhanced due to the presence of the spontaneously generated coherence. At the same time, the probe-absorption profile exhibits the double-peak structure and the probe-absorption peak gradually decreases as the pump intensity increases. On the contrary, the amplification of such a weak probe field near the line center of the probe transition can be achieved by adiusting the coherent Dump field intensity in the absence of the spontaneously generated coherence.

  19. Rapid Diagnosis of Human Herpesvirus 6 Infection by a Novel DNA Amplification Method, Loop-Mediated Isothermal Amplification

    OpenAIRE

    Ihira, Masaru; Yoshikawa, Tetsushi; Enomoto, Yoshihiko; Akimoto, Shiho; Ohashi, Masahiro; Suga, Sadao; Nishimura, Naoko; Ozaki, Takao; Nishiyama, Yukihiro; Notomi, Tsugunori; Ohta, Yoshinori; Asano, Yoshizo

    2004-01-01

    A novel nucleic acid amplification method, termed loop-mediated isothermal amplification (LAMP), which amplifies DNA with high specificity, efficiency, and rapidity under isothermal conditions, may be a valuable tool for the rapid detection of infectious agents. LAMP was developed for human herpesvirus 6 (HHV-6), and its reliability was evaluated in this study. Although LAMP products were detected in HHV-6 B and HHV-6 A DNA, they were not detected in HHV-7 and human cytomegalovirus DNA. The s...

  20. Comparison of Three Nucleic Acid Amplification Assays of Cerebrospinal Fluid for Diagnosis of Cytomegalovirus Encephalitis

    Science.gov (United States)

    Bestetti, Arabella; Pierotti, Chiara; Terreni, Mariarosa; Zappa, Alessandra; Vago, Luca; Lazzarin, Adriano; Cinque, Paola

    2001-01-01

    The diagnostic reliabilities of three cytomegalovirus (CMV) nucleic acid amplification assays of cerebrospinal fluid (CSF) were compared by using CSF samples from human immunodeficiency virus-infected patients with a postmortem histopathological diagnosis of CMV encephalitis (n = 15) or other central nervous system conditions (n = 16). By using a nested PCR assay, the quantitative COBAS AMPLICOR CMV MONITOR PCR, and the NucliSens CMV pp67 nucleic acid sequence-based amplification assay, sensitivities were 93.3, 86.6, and 93.3%, respectively, and specificities were 93.7, 93.7, and 87.5%, respectively. The COBAS AMPLICOR assay revealed significantly higher CMV DNA levels in patients with diffuse ventriculoencephalitis than in patients with focal periventricular lesions. PMID:11230445

  1. The effects of different maceration techniques on nuclear DNA amplification using human bone.

    Science.gov (United States)

    Lee, Esther J; Luedtke, Jennifer G; Allison, Jamie L; Arber, Carolyn E; Merriwether, D Andrew; Steadman, Dawnie Wolfe

    2010-07-01

    Forensic anthropologists routinely macerate human bone for the purposes of identity and trauma analysis, but the heat and chemical treatments used can destroy genetic evidence. As a follow-up to a previous study on nuclear DNA recovery that used pig ribs, this study utilizes human skeletal remains treated with various bone maceration techniques for nuclear DNA amplification using the standard Combined DNA Index System (CODIS) markers. DNA was extracted from 18 samples of human lower leg bones subjected to nine chemical and heat maceration techniques. Genotyping was carried out using the AmpFlSTR COfiler and AmpFlSTR Profiler Plus ID kits. Results showed that heat treatments via microwave or Biz/Na(2)CO(3) in sub-boiling water efficiently macerate bone and produce amplifiable nuclear DNA for genetic analysis. Long-term use of chemicals such as hydrogen peroxide is discouraged as it results in poor bone quality and has deleterious effects on DNA amplification.

  2. Suppression of the four-wave mixing amplification via Raman absorption

    CERN Document Server

    Romanov, Gleb; Novikova, I

    2015-01-01

    We propose a method to controllably suppress the effect of the four-wave mixing caused by the coupling of the strong control optical field to both optical transitions in the $\\Lambda$ system under the conditions of electromagnetically induced transparency. At sufficiently high atomic density, this process leads to amplification of a weak optical signal field, that is detrimental for the fidelity of any EIT-based quantum information applications. Here we show that an additional absorption resonance centered around the idler field frequency, generated in such a four-wave mixing process, may efficiently suppress the unwanted signal amplification without affecting properties of the EIT interaction. We discuss the possibility of creating such tunable absorption using two-photon Raman absorption resonances in the other Rb isotope, and present some preliminary experimental results.

  3. FLUORESCENCE IN SITU HYBRIDIZATION COMBINED WITH IMMUNOFLUORESCENT STAINING FOR RAPID DETECTION OF Nmyc AMPLIFICATION IN NEUROBLASTOMA

    Institute of Scientific and Technical Information of China (English)

    WANG Wei王伟; Marianne Ifversen; ZHAO Chun-ting赵春亭; WANG Hong-yi汪洪毅; ZHAO Hong-guo赵洪国

    2004-01-01

    Objective: To establish a method to improve the detection of disseminated tumor cells in bone marrow and peripheral blood samples of neuroblastoma patients and analysis of cytogenetic aberration. Methods: Immunofluorescent staining was performed using a cocktail of primary monoclonal neuroblastoma antibodies (14.G2a, 5.1H11). Fluorescence in situ hybridization was applied with fluorescent probes specific for Nmyc genes afterwards. A novel computer assisted scanning system for automatic search, image analysis and repositioning of these positive cells was developed. Fifty-six bone marrow and peripheral blood samples from 7 patients were evaluated by this method. Results: Fluorescence in situ hybridization can be combined with immunofluorescent staining in detecting Nmyc amplification in neuroblastoma patients. Fluorescence in situ hybridization results correlated well with data obtained by conventional cytogenetic procedures. Conclusion: The technique described allows search of tumor cells in the bone marrow as well as detection of Nmyc amplification in interphase nuclei.

  4. Parametric amplification of orbital angular momentum beams based on light-acoustic interaction

    Energy Technology Data Exchange (ETDEWEB)

    Gao, Wei, E-mail: wei-g@163.com, E-mail: zhuzhihandd@sina.com; Mu, Chunyuan; Yang, Yuqiang [Institute of Photonics and Optical Fiber Technology, Harbin University of Science and Technology, Harbin 150080 (China); Li, Hongwei; Zhu, Zhihan, E-mail: wei-g@163.com, E-mail: zhuzhihandd@sina.com [The Higher Educational Key Laboratory for Measuring & Control Technology and Instrumentation of Heilongjiang Province, Harbin 150080 (China)

    2015-07-27

    A high fidelity amplification of beams carrying orbital angular momentum (OAM) is very crucial for OAM multiplexing and other OAM-based applications. Here, we report a demonstration of stimulated Brillouin amplification for OAM beams, and the energy conversion efficiency of photon-phonon coupling and the phase structure of amplified signals are investigated in collinear and noncollinear frame systems, respectively. Our results demonstrate that the OAM signals can be efficiently amplified without obvious noise introduced, and the modes of output signal are independent of the pump modes or the geometrical frames. Meanwhile, an OAM state depending on the optical modes and the geometrical frames is loaded into phonons by coherent light-acoustic interaction, which reveals more fundamental significance and a great application potential in OAM-multiplexing.

  5. Parametric amplification of orbital angular momentum beams based on light-acoustic interaction

    International Nuclear Information System (INIS)

    A high fidelity amplification of beams carrying orbital angular momentum (OAM) is very crucial for OAM multiplexing and other OAM-based applications. Here, we report a demonstration of stimulated Brillouin amplification for OAM beams, and the energy conversion efficiency of photon-phonon coupling and the phase structure of amplified signals are investigated in collinear and noncollinear frame systems, respectively. Our results demonstrate that the OAM signals can be efficiently amplified without obvious noise introduced, and the modes of output signal are independent of the pump modes or the geometrical frames. Meanwhile, an OAM state depending on the optical modes and the geometrical frames is loaded into phonons by coherent light-acoustic interaction, which reveals more fundamental significance and a great application potential in OAM-multiplexing

  6. Micro-fluidic partitioning between polymeric sheets for chemical amplification and processing

    Science.gov (United States)

    Anderson, Brian L.

    2015-05-26

    A system for fluid partitioning for chemical amplification or other chemical processing or separations of a sample, comprising a first dispenser of a first polymeric sheet, wherein the first polymeric sheet contains chambers; a second dispenser of a second polymeric sheet wherein the first dispenser and the second dispenser are positioned so that the first polymeric sheet and the second polymeric sheet become parallel; a dispenser of the fluid positioned to dispense the fluid between the first polymeric sheet and the second polymeric sheet; and a seal unit that seals the first polymeric sheet and the second polymeric sheet together thereby sealing the sample between the first polymeric sheet and the second polymeric sheet and partitioning the fluid for chemical amplification or other chemical processing or separations.

  7. Quantum Darwinism: Amplification and the Acquisition of Information by Spin Environments

    Energy Technology Data Exchange (ETDEWEB)

    Zwolak, Michael P. [Oregon State Univ., Corvallis, OR (United States) Dept. of Physics; Riedel, Jess [IBM, Yorktown Heights, NY (United States). Thomas J. Watson Research Center; Zurek, Wojciech H. [Los Alamos National Lab. (LANL), Los Alamos, NM (United States)

    2014-07-09

    Quantum Darwinism recognizes the role of the environment as a communication channel: Decoherence can amplify select information – information about the pointer states of a system of interest (preventing access to complementary information about superpositions of those states). We examine the amplification process for a spin environment under a variety of conditions. For initially pure environment states, the contribution to decoherence and the partial record deposited in an environment spin are both determined by the overlap of conditional states generated on the spin. For mixed environments, however, decoherence and a partial record are no longer directly related. The partial record, though, is given by a generalized measure of overlap – the quantum Chernoff information. The latter quantity is a measure of distinguishability and gives the efficiency of the amplification process. We calculate the Chernoff information and show explicitly that, except for a set of measure zero, there is always redundant information acquired by the environment.

  8. Development of a Loop-Mediated Isothermal Amplification Assay for Porcine Circovirus Type 2

    Institute of Scientific and Technical Information of China (English)

    Ye-bing Liu; Lei Zhang; Qin-hong Xue; Yi-bao Ning; Zhi-gang Zhang

    2011-01-01

    In this study,the loop-mediated isothermal amplification(LAMP)method was used to develop a rapid and simple detection system for porcine circovirus type 2(PCV2).According to the PCV2 sequences published in GenBank,multiple LAMP primers were designed targeting conserved sequences of PCV2.Using the DNA extracted from PCV2 isolates HUN-09 and SD-09 as the template,LAMP reactions in a PCV2 LAMP system was performed,the amplification products were detected by adding SYBR Green I and could be observed directly by the naked eye.The results showed highly-efficient and specific amplification in 30 min at 63℃ with a LAMP real-time turbidimeter.Furthermore,PCV2 DNA templates,with a detection limit of 5.5×10-5ng of nucleic acid,indicated that this assay was highly sensitive.The results obtained with the naked eye after SYBR Green I staining were consistent with those detected by the real-time turbidimeter,showing the potential simplicity of interpretation of the assay results.The LAMP assay appeared to have greater accuracy than PCR and virus isolation for the analysis of 18 clinical samples.In addition it offers higher specificity and sensitivity,shorter reaction times and simpler procedures than the currently available methods of PCV2 detection.It is therefore a promising tool for the effective and efficient detection of PCV2.

  9. Using DNS amplification DDoS attack for hiding data

    Science.gov (United States)

    Mehić, M.; Voznak, M.; Safarik, J.; Partila, P.; Mikulec, M.

    2014-05-01

    This paper concerns available steganographic techniques that can be used for sending hidden data through public network. Typically, in steganographic communication it is advised to use popular/often used method for sending hidden data and amount of that data need to be high as much as possible. We confirmed this by choosing a Domain Name System (DNS) as a vital protocol of each network and choosing Distributed denial of service (DDoS) attacks that are most popular network attacks currently represented in the world. Apart from characterizing existing steganographic methods we provide new insights by presenting two new techniques. The first one is network steganography solution which exploits free/unused protocols fields and is known for IP, UDP or TCP protocols, but has never been applied to DNS (Domain Name Server) which are the fundamental part of network communications. The second explains the usage of DNS Amplification DDoS Attack to send seamlessly data through public network. The calculation that was performed to estimate the total amount of data that can be covertly transferred by using these technique, regardless of steganalysis, is included in this paper.

  10. Period doubling induced by thermal noise amplification in genetic circuits

    KAUST Repository

    Ruocco, G.

    2014-11-18

    Rhythms of life are dictated by oscillations, which take place in a wide rage of biological scales. In bacteria, for example, oscillations have been proven to control many fundamental processes, ranging from gene expression to cell divisions. In genetic circuits, oscillations originate from elemental block such as autorepressors and toggle switches, which produce robust and noise-free cycles with well defined frequency. In some circumstances, the oscillation period of biological functions may double, thus generating bistable behaviors whose ultimate origin is at the basis of intense investigations. Motivated by brain studies, we here study an “elemental” genetic circuit, where a simple nonlinear process interacts with a noisy environment. In the proposed system, nonlinearity naturally arises from the mechanism of cooperative stability, which regulates the concentration of a protein produced during a transcription process. In this elemental model, bistability results from the coherent amplification of environmental fluctuations due to a stochastic resonance of nonlinear origin. This suggests that the period doubling observed in many biological functions might result from the intrinsic interplay between nonlinearity and thermal noise.

  11. SBS mitigation with 'two-tone' amplification: a theoretical model

    Science.gov (United States)

    Bronder, T. J.; Shay, T. M.; Dajani, I.; Gavrielides, A.; Robin, C. A.; Lu, C. A.

    2008-02-01

    A new technique for mitigating stimulated Brillouin scattering (SBS) effects in narrow-linewidth Yb-doped fiber amplifiers is demonstrated with a model that reduces to solving an 8×8 system of coupled nonlinear equations with the gain, SBS, and four-wave mixing (FMW) incorporated into the model. This technique uses two seed signals, or 'two-tones', with each tone reaching its SBS threshold almost independently and thus increasing the overall threshold for SBS in the fiber amplifier. The wavelength separation of these signals is also selected to avoid FWM, which in this case possesses the next lowest nonlinear effects threshold. This model predicts an output power increase of 86% (at SBS threshold with no signs of FWM) for a 'two-tone' amplifier with seed signals at 1064nm and 1068nm, compared to a conventional fiber amplifier with a single 1064nm seed. The model is also used to simulate an SBS-suppressing fiber amplifier to test the regime where FWM is the limiting factor. In this case, an optimum wavelength separation of 3nm to 10nm prevents FWM from reaching threshold. The optimum ratio of the input power for the two seed signals in 'two-tone' amplification is also tested. Future experimental verification of this 'two-tone' technique is discussed.

  12. ASAP: Amplification, sequencing & annotation of plastomes

    Directory of Open Access Journals (Sweden)

    Folta Kevin M

    2005-12-01

    Full Text Available Abstract Background Availability of DNA sequence information is vital for pursuing structural, functional and comparative genomics studies in plastids. Traditionally, the first step in mining the valuable information within a chloroplast genome requires sequencing a chloroplast plasmid library or BAC clones. These activities involve complicated preparatory procedures like chloroplast DNA isolation or identification of the appropriate BAC clones to be sequenced. Rolling circle amplification (RCA is being used currently to amplify the chloroplast genome from purified chloroplast DNA and the resulting products are sheared and cloned prior to sequencing. Herein we present a universal high-throughput, rapid PCR-based technique to amplify, sequence and assemble plastid genome sequence from diverse species in a short time and at reasonable cost from total plant DNA, using the large inverted repeat region from strawberry and peach as proof of concept. The method exploits the highly conserved coding regions or intergenic regions of plastid genes. Using an informatics approach, chloroplast DNA sequence information from 5 available eudicot plastomes was aligned to identify the most conserved regions. Cognate primer pairs were then designed to generate ~1 – 1.2 kb overlapping amplicons from the inverted repeat region in 14 diverse genera. Results 100% coverage of the inverted repeat region was obtained from Arabidopsis, tobacco, orange, strawberry, peach, lettuce, tomato and Amaranthus. Over 80% coverage was obtained from distant species, including Ginkgo, loblolly pine and Equisetum. Sequence from the inverted repeat region of strawberry and peach plastome was obtained, annotated and analyzed. Additionally, a polymorphic region identified from gel electrophoresis was sequenced from tomato and Amaranthus. Sequence analysis revealed large deletions in these species relative to tobacco plastome thus exhibiting the utility of this method for structural and

  13. Regulation of ribosomal DNA amplification by the TOR pathway.

    Science.gov (United States)

    Jack, Carmen V; Cruz, Cristina; Hull, Ryan M; Keller, Markus A; Ralser, Markus; Houseley, Jonathan

    2015-08-01

    Repeated regions are widespread in eukaryotic genomes, and key functional elements such as the ribosomal DNA tend to be formed of high copy repeated sequences organized in tandem arrays. In general, high copy repeats are remarkably stable, but a number of organisms display rapid ribosomal DNA amplification at specific times or under specific conditions. Here we demonstrate that target of rapamycin (TOR) signaling stimulates ribosomal DNA amplification in budding yeast, linking external nutrient availability to ribosomal DNA copy number. We show that ribosomal DNA amplification is regulated by three histone deacetylases: Sir2, Hst3, and Hst4. These enzymes control homologous recombination-dependent and nonhomologous recombination-dependent amplification pathways that act in concert to mediate rapid, directional ribosomal DNA copy number change. Amplification is completely repressed by rapamycin, an inhibitor of the nutrient-responsive TOR pathway; this effect is separable from growth rate and is mediated directly through Sir2, Hst3, and Hst4. Caloric restriction is known to up-regulate expression of nicotinamidase Pnc1, an enzyme that enhances Sir2, Hst3, and Hst4 activity. In contrast, normal glucose concentrations stretch the ribosome synthesis capacity of cells with low ribosomal DNA copy number, and we find that these cells show a previously unrecognized transcriptional response to caloric excess by reducing PNC1 expression. PNC1 down-regulation forms a key element in the control of ribosomal DNA amplification as overexpression of PNC1 substantially reduces ribosomal DNA amplification rate. Our results reveal how a signaling pathway can orchestrate specific genome changes and demonstrate that the copy number of repetitive DNA can be altered to suit environmental conditions.

  14. Multi-mJ mid-infrared kHz OPCPA and Yb-doped pump lasers for tabletop coherent soft x-ray generation

    International Nuclear Information System (INIS)

    We present our recent progress on the development of a mid-infrared (mid-IR), multi-mJ, kHz optical parametric chirped-pulse amplification (OPCPA) system, pumped by a homebuilt picosecond cryogenic Yb:YAG chirped-pulse amplifier, and its application to soft x-ray high-order harmonic generation. The cryogenic Yb:YAG laser operating at 1 kHz repetition rate delivers 42 mJ, 17 ps, 1.03 μm pulses to pump the OPCPA system. Efficient second and fourth harmonic generations from the Yb:YAG system are demonstrated, which provide the pumping capability for OPCPA at various wavelengths. The mid-IR OPCPA system produces 2.6 mJ, 39 fs, 2.1 μm pulses with good beam quality (M 2 = ∼1.5) at 1 kHz repetition rate. The output pulses of the OPCPA are used to generate high-order harmonics in both gas cell and hollow-core fiber targets. A photon flux of ∼2 × 108 photon/s/1% bandwidth at 160 eV in Ar is measured while the cutoff is 190 eV. The direct measurements of the photon flux from x-ray photodiodes have confirmed the generation of water-window soft x-ray photons with a flux ∼106 photon/s/1% bandwidth at 330 eV in Ne. The demonstrated OPCPA and Yb:YAG pump laser technologies provide an excellent platform of energy and power scalable few-cycle mid-IR sources that are suitable for high-flux tabletop coherent soft x-ray generation. (paper)

  15. 六色荧光标记快速PCR扩增体系的建立及验证%Establishment and Verification of 6-color Fluorescent-labeled Rapid PCR Amplifi-cation System

    Institute of Scientific and Technical Information of China (English)

    刘亚举; 张俊涛; 金海英; 石美森

    2016-01-01

    Objective To establish the rapid PCR am plification program and system and to verify the technical indexes. Methods PCR m ultiplex and capillary electrophoresis detection of 24 autosom al STR loci and one Y-STR loci using the 6-color fluorescence m arking technology, as w ell as Amelogenin and Y-InDel. Meanw hile, sensitivity, specificity, identity, stability, m ixing and a batch of sam ple tests w ere investigated, and the genotype of various routine sam ples and degraded, exfoliated cell sam ples w ere observed. Results The sensitivity of the system w as 0.062 5 ng. In addition, the genotype could be detected accu-rately only around 65 m in via rapid am plification. The species-specificity w as high and the genotyping of all kinds of dry blood specim ens of filter paper and m ixed, degraded, exfoliated cell sam ples w ere accu-rate. Conclusion The rapid am plification system can significantly im prove the detection rate, and obtain accurate and stable genotyping results, w hich m ay be im portant im plications for the establishm ent of STR database and study on population genetics and forensic identification.%目的:建立PCR快速扩增程序和体系,并对其技术指标进行验证。方法采用六色荧光标记技术,对24个常染色体STR基因座、1个Y-STR基因座和Amelogenin、Y-InDel基因座进行复合扩增及毛细管电泳检测,同时考察体系的灵敏度、特异性、同一性、稳定性、混合样本及批量样本测试,并观察各种常见检材及降解、脱落细胞检材的分型情况。结果所建立的体系灵敏度达0.0625 ng,快速扩增仅耗时65 min就可获得准确分型;种属特异性高;各种纸质血样本和混合、降解、脱落细胞检材的分型正确。结论本研究建立的快速扩增体系可显著提升检验速率,分型准确、稳定,对建立STR数据库、研究群体遗传学和进行法医学鉴定有重要意义。

  16. Problems encountered when defining Arctic amplification as a ratio

    Science.gov (United States)

    Hind, Alistair; Zhang, Qiong; Brattström, Gudrun

    2016-07-01

    In climate change science the term ‘Arctic amplification’ has become synonymous with an estimation of the ratio of a change in Arctic temperatures compared with a broader reference change under the same period, usually in global temperatures. Here, it is shown that this definition of Arctic amplification comes with a suite of difficulties related to the statistical properties of the ratio estimator itself. Most problematic is the complexity of categorizing uncertainty in Arctic amplification when the global, or reference, change in temperature is close to 0 over a period of interest, in which case it may be impossible to set bounds on this uncertainty. An important conceptual distinction is made between the ‘Ratio of Means’ and ‘Mean Ratio’ approaches to defining a ratio estimate of Arctic amplification, as they do not only possess different uncertainty properties regarding the amplification factor, but are also demonstrated to ask different scientific questions. Uncertainty in the estimated range of the Arctic amplification factor using the latest global climate models and climate forcing scenarios is expanded upon and shown to be greater than previously demonstrated for future climate projections, particularly using forcing scenarios with lower concentrations of greenhouse gases.

  17. Magnetic Amplification by Magnetized Cosmic Rays in SNR Shocks

    CERN Document Server

    Riquelme, Mario A

    2009-01-01

    (Abridged) X-ray observations of synchrotron rims in supernova remnant (SNR) shocks show evidence of strong magnetic field amplification (a factor of ~100 between the upstream and downstream medium). This amplification may be due to plasma instabilities driven by shock-accelerated cosmic rays (CRs). One candidate is the cosmic ray current-driven (CRCD) instability (Bell 2004), caused by the electric current of large Larmor radii CRs propagating parallel to the upstream magnetic field. Particle-in-cell (PIC) simulations have shown that the back-reaction of the amplified field on CRs would limit the amplification factor of this instability to less than ~10 in galactic SNRs. In this paper, we study the possibility of further amplification driven near shocks by "magnetized" CRs, whose Larmor radii are smaller than the length scale of the field that was previously amplified by the CRCD instability. We find that additional amplification can occur due to a new instability, driven by the CR current perpendicular to t...

  18. High-temperature ultrafast polariton parametric amplification in semiconductor microcavities

    Science.gov (United States)

    Saba, M.; Ciuti, C.; Bloch, J.; Thierry-Mieg, V.; André, R.; Dang, Le Si; Kundermann, S.; Mura, A.; Bongiovanni, G.; Staehli, J. L.; Deveaud, B.

    2001-12-01

    Cavity polaritons, the elementary optical excitations of semiconductor microcavities, may be understood as a superposition of excitons and cavity photons. Owing to their composite nature, these bosonic particles have a distinct optical response, at the same time very fast and highly nonlinear. Very efficient light amplification due to polariton-polariton parametric scattering has recently been reported in semiconductor microcavities at liquid-helium temperatures. Here we demonstrate polariton parametric amplification up to 120K in GaAlAs-based microcavities and up to 220K in CdTe-based microcavities. We show that the cut-off temperature for the amplification is ultimately determined by the binding energy of the exciton. A 5-µm-thick planar microcavity can amplify a weak light pulse more than 5,000 times. The effective gain coefficient of an equivalent homogeneous medium would be 107cm-1. The subpicosecond duration and high efficiency of the amplification could be exploited for high-repetition all-optical microscopic switches and amplifiers. 105 polaritons occupy the same quantum state during the amplification, realizing a dynamical condensate of strongly interacting bosons which can be studied at high temperature.

  19. Amplification of Information by Photons and the Quantum Chernoff Bound

    Science.gov (United States)

    Zwolak, Michael; Riedel, C. Jess; Zurek, Wojciech H.

    2014-03-01

    Amplification was regarded, since the early days of quantum theory, as a mysterious ingredient that endows quantum microstates with macroscopic consequences, key to the ``collapse of the wavepacket,'' and a way to avoid embarrassing problems exemplified by Schrödinger's cat. This bridge between the quantum microworld and the classical world of our experience was postulated ad hoc in the Copenhagen Interpretation. Quantum Darwinism views amplification as replication, in many copies, of information about quantum states. We show that such amplification is a natural consequence of a broad class of models of decoherence, including the photon environment we use to obtain most of our information. The resultant amplification is huge, proportional to # ξQCB . Here, #  is the environment size and ξQCB is the ``typical'' Quantum Chernoff Information, which quantifies the efficiency of the amplification. The information communicated though the environment is imprinted in the states of individual environment subsystems, e.g., in single photons, which document the transfer of information into the environment and result in the emergence of the classical world. See, http://mike.zwolak.org

  20. Electrochemical aptasensor for highly sensitive determination of cocaine using a supramolecular aptamer and rolling circle amplification

    International Nuclear Information System (INIS)

    We report on a novel strategy for the electrochemical detection of cocaine. It is based on the use of a supramolecular aptamer, rolling circle amplification (RCA), and multiplex binding of a biotin-strepavidin system. The aptamer fragments were assembled to a supramolecular aptamer which, in the presence of cocaine, conjugates to streptavidin for anchoring of biotinylated circular DNA. This initiates RCA and enables sensitive electrochemical-enzymatic readout. A significant signal amplification was obtained by using streptavidin linked to alkaline phosphatase that binds to the remaining biotinylated detection probes and catalyzes the hydrolysis of the synthetic enzyme substrate α-naphthylphosphate. This dual amplification strategy tremendously increases the detection limit of the aptasensor. Under optimal conditions and using differential pulse voltammetry, cocaine can be detected in the concentration range between 2 and 500 nM with a detection limit as low as 1.3 nM (at S/N = 3). The method is specific and acceptably reproducible. It was successfully applied to the detection of cocaine in (spiked) urine samples. The data were in good agreement with those obtained by the GC-MS reference method. (author)

  1. Whole genome amplification and de novo assembly of single bacterial cells.

    Directory of Open Access Journals (Sweden)

    Sébastien Rodrigue

    Full Text Available BACKGROUND: Single-cell genome sequencing has the potential to allow the in-depth exploration of the vast genetic diversity found in uncultured microbes. We used the marine cyanobacterium Prochlorococcus as a model system for addressing important challenges facing high-throughput whole genome amplification (WGA and complete genome sequencing of individual cells. METHODOLOGY/PRINCIPAL FINDINGS: We describe a pipeline that enables single-cell WGA on hundreds of cells at a time while virtually eliminating non-target DNA from the reactions. We further developed a post-amplification normalization procedure that mitigates extreme variations in sequencing coverage associated with multiple displacement amplification (MDA, and demonstrated that the procedure increased sequencing efficiency and facilitated genome assembly. We report genome recovery as high as 99.6% with reference-guided assembly, and 95% with de novo assembly starting from a single cell. We also analyzed the impact of chimera formation during MDA on de novo assembly, and discuss strategies to minimize the presence of incorrectly joined regions in contigs. CONCLUSIONS/SIGNIFICANCE: The methods describe in this paper will be useful for sequencing genomes of individual cells from a variety of samples.

  2. Self-induced parametric amplification arising from nonlinear elastic coupling in a micromechanical resonating disk gyroscope.

    Science.gov (United States)

    Nitzan, Sarah H; Zega, Valentina; Li, Mo; Ahn, Chae H; Corigliano, Alberto; Kenny, Thomas W; Horsley, David A

    2015-01-01

    Parametric amplification, resulting from intentionally varying a parameter in a resonator at twice its resonant frequency, has been successfully employed to increase the sensitivity of many micro- and nano-scale sensors. Here, we introduce the concept of self-induced parametric amplification, which arises naturally from nonlinear elastic coupling between the degenerate vibration modes in a micromechanical disk-resonator, and is not externally applied. The device functions as a gyroscope wherein angular rotation is detected from Coriolis coupling of elastic vibration energy from a driven vibration mode into a second degenerate sensing mode. While nonlinear elasticity in silicon resonators is extremely weak, in this high quality-factor device, ppm-level nonlinear elastic effects result in an order-of-magnitude increase in the observed sensitivity to Coriolis force relative to linear theory. Perfect degeneracy of the primary and secondary vibration modes is achieved through electrostatic frequency tuning, which also enables the phase and frequency of the parametric coupling to be varied, and we show that the resulting phase and frequency dependence of the amplification follow the theory of parametric resonance. We expect that this phenomenon will be useful for both fundamental studies of dynamic systems with low dissipation and for increasing signal-to-noise ratio in practical applications such as gyroscopes.

  3. Photoacoustic imaging using lock-in amplification and pulsed fiber lasers

    Science.gov (United States)

    Shi, Wei; Hajireza, Parsin; Zemp, Roger

    2016-03-01

    Photoacoustic (PA) imaging is a non-invasive, non-ionizing imaging technology with high optical contrast between blood and tissue, and with high sensitivity of hemoglobin concentration and oxygen saturation due to different optical absorption spectra resulting from different oxygenation of hemoglobin. Most PA imaging systems implement a nanosecond pulsed laser source as excitation source to induce PA signal, and rely on broadband amplifiers to record time-domain PA signals [1-6]. Some groups, however, have reported using modulated continuous-wave lasers as an excitation source for frequency-domain imaging [7-9]. Frequency-domain imaging offers the potential of lock-in amplification which has sensitivities as low as nV even in noise orders of magnitude higher than the signal. However, although modulated CW sources works for low cost and compact PA imaging, it does not satisfy thermal and stress confinement conditions required for optimal PA signal strength. Here, we investigate a PA methodology using pulsed fiber lasers as excitation laser source combined with lock-in amplification technology. For comparison, we also studied time-domain PA methodology. Phantom studies show that signal-to-noise ratio (SNR) obtained with frequency domain PA imaging is significantly more sensitive than that obtained using time-domain PA imaging when the laser pulse repetition rate (PRR) matches the bandwidth of ultrasound transducer. Therefore, high sensitive PA imaging technology using pulsed fiber laser sources with lock-in amplification may potentially greatly extend the depth of PA imaging.

  4. Transcriptome analysis in primary neural stem cells using a tag cDNA amplification method

    Directory of Open Access Journals (Sweden)

    Wikström Lilian

    2005-04-01

    Full Text Available Abstract Background Neural stem cells (NSCs can be isolated from the adult mammalian brain and expanded in culture, in the form of cellular aggregates called neurospheres. Neurospheres provide an in vitro model for studying NSC behaviour and give information on the factors and mechanisms that govern their proliferation and differentiation. They are also a promising source for cell replacement therapies of the central nervous system. Neurospheres are complex structures consisting of several cell types of varying degrees of differentiation. One way of characterising neurospheres is to analyse their gene expression profiles. The value of such studies is however uncertain since they are heterogeneous structures and different populations of neurospheres may vary significantly in their gene expression. Results To address this issue, we have used cDNA microarrays and a recently reported tag cDNA amplification method to analyse the gene expression profiles of neurospheres originating from separate isolations of the lateral ventricle wall of adult mice and passaged to varying degrees. Separate isolations as well as consecutive passages yield a high variability in gene expression while parallel cultures yield the lowest variability. Conclusions We demonstrate a low technical amplification variability using the employed amplification strategy and conclude that neurospheres from the same isolation and passage are sufficiently similar to be used for comparative gene expression analysis.

  5. Sensitive detection of Escherichia coli O157:H7 based on cascade signal amplification in ELISA.

    Science.gov (United States)

    Shan, Shan; Liu, Daofeng; Guo, Qi; Wu, Songsong; Chen, Rui; Luo, Kai; Hu, Liming; Xiong, Yonghua; Lai, Weihua

    2016-09-01

    In this study, cascade signal amplification in ELISA involving double-antibody sandwich ELISA and indirectly competitive ELISA was established to sensitively detect Escherichia coli O157:H7. In the double-antibody sandwich ELISA, a complex was formed comprising anti-E. coli O157:H7 polyclonal antibody, E. coli O157:H7, biotinylated anti-E. coli O157:H7 monoclonal antibody, streptavidin, and biotinylated β-lactamase. Penicillin solution was then added into the ELISA well and hydrolyzed by β-lactamase. Afterward, the penicillin solution was transferred to indirectly competitive ELISA. The concentration of penicillin can be sensitively detected in indirectly competitive ELISA. In the cascade signal amplification system, increasing the amount of added E. coli O157:H7 resulted in more β-lactamase and less penicillin. The detection sensitivity of E. coli O157:H7, which was 20cfu/mL with the cascade signal amplification in ELISA, was 1,000-fold higher than that of traditional ELISA. Furthermore, the novel method can be used to detect E. coli O157:H7 in milk (2cfu/g). Therefore, this new signaling strategy will facilitate analyses of highly sensitive foodborne pathogens. PMID:27394946

  6. Polydimethylsiloxane microfluidic chemiluminescence immunodevice with the signal amplification strategy for sensitive detection of human immunoglobin G.

    Science.gov (United States)

    Li, Huifang; Zhao, Mei; Liu, Wei; Chu, Weiru; Guo, Yumei

    2016-01-15

    A polydimethylsiloxane (PDMS) microfluidic chemiluminescence (CL) immunodevice for sensitive detection of human immunoglobin G (IgG) with the signal amplification strategy was developed in this work. The immunodevice was prepared by covalently immobilizing capture antibodies (Abs) on the silanized microchannel of microfluidic chip. Gold nanoparticles (AuNPs) functionalized with a high molar ratio of horseradish peroxidase (HRP) were used as an Ab label for signal amplification. Using a sandwich immunoassay, the multi-HRP conjugated AuNPs can catalyze the luminol-H2O2 CL system to achieve the high sensitivity. In addition, the double spiral flow-channel was adopted here, which can still contribute to the high sensitivity. Based on signal amplification strategy, the performance of human IgG tests revealed a lower detection limit (DL) of 0.03ng/mL and showed an increase of 7.4-fold in detection sensitivity compared to a commercial Ab-HRP conjugation. This microfluidic immunodevice can provide an alternative approach for sensitive detection of human IgG in the field of clinic diagnostic and therapeutic. PMID:26592629

  7. Low cost extraction and isothermal amplification of DNA for infectious diarrhea diagnosis.

    Science.gov (United States)

    Huang, Shichu; Do, Jaephil; Mahalanabis, Madhumita; Fan, Andy; Zhao, Lei; Jepeal, Lisa; Singh, Satish K; Klapperich, Catherine M

    2013-01-01

    In order to counter the common perception that molecular diagnostics are too complicated to work in low resource settings, we have performed a difficult sample preparation and DNA amplification protocol using instrumentation designed to be operated without wall or battery power. In this work we have combined a nearly electricity-free nucleic acid extraction process with an electricity-free isothermal amplification assay to detect the presence of Clostridium difficile (C. difficile) DNA in the stool of infected patients. We used helicase-dependent isothermal amplification (HDA) to amplify the DNA in a low-cost, thermoplastic reaction chip heated with a pair of commercially available toe warmers, while using a simple Styrofoam insulator. DNA was extracted from known positive and negative stool samples. The DNA extraction protocol utilized an air pressure driven solid phase extraction device run using a standard bicycle pump. The simple heater setup required no electricity or battery and was capable of maintaining the temperature at 65°C±2°C for 55 min, suitable for repeatable HDA amplification. Experiments were performed to explore the adaptability of the system for use in a range of ambient conditions. When compared to a traditional centrifuge extraction protocol and a laboratory thermocycler, this disposable, no power platform achieved approximately the same lower limit of detection (1.25×10(-2) pg of C. difficile DNA) while requiring much less raw material and a fraction of the lab infrastructure and cost. This proof of concept study could greatly impact the accessibility of molecular assays for applications in global health.

  8. Low cost extraction and isothermal amplification of DNA for infectious diarrhea diagnosis.

    Directory of Open Access Journals (Sweden)

    Shichu Huang

    Full Text Available In order to counter the common perception that molecular diagnostics are too complicated to work in low resource settings, we have performed a difficult sample preparation and DNA amplification protocol using instrumentation designed to be operated without wall or battery power. In this work we have combined a nearly electricity-free nucleic acid extraction process with an electricity-free isothermal amplification assay to detect the presence of Clostridium difficile (C. difficile DNA in the stool of infected patients. We used helicase-dependent isothermal amplification (HDA to amplify the DNA in a low-cost, thermoplastic reaction chip heated with a pair of commercially available toe warmers, while using a simple Styrofoam insulator. DNA was extracted from known positive and negative stool samples. The DNA extraction protocol utilized an air pressure driven solid phase extraction device run using a standard bicycle pump. The simple heater setup required no electricity or battery and was capable of maintaining the temperature at 65°C±2°C for 55 min, suitable for repeatable HDA amplification. Experiments were performed to explore the adaptability of the system for use in a range of ambient conditions. When compared to a traditional centrifuge extraction protocol and a laboratory thermocycler, this disposable, no power platform achieved approximately the same lower limit of detection (1.25×10(-2 pg of C. difficile DNA while requiring much less raw material and a fraction of the lab infrastructure and cost. This proof of concept study could greatly impact the accessibility of molecular assays for applications in global health.

  9. Low cost extraction and isothermal amplification of DNA for infectious diarrhea diagnosis.

    Science.gov (United States)

    Huang, Shichu; Do, Jaephil; Mahalanabis, Madhumita; Fan, Andy; Zhao, Lei; Jepeal, Lisa; Singh, Satish K; Klapperich, Catherine M

    2013-01-01

    In order to counter the common perception that molecular diagnostics are too complicated to work in low resource settings, we have performed a difficult sample preparation and DNA amplification protocol using instrumentation designed to be operated without wall or battery power. In this work we have combined a nearly electricity-free nucleic acid extraction process with an electricity-free isothermal amplification assay to detect the presence of Clostridium difficile (C. difficile) DNA in the stool of infected patients. We used helicase-dependent isothermal amplification (HDA) to amplify the DNA in a low-cost, thermoplastic reaction chip heated with a pair of commercially available toe warmers, while using a simple Styrofoam insulator. DNA was extracted from known positive and negative stool samples. The DNA extraction protocol utilized an air pressure driven solid phase extraction device run using a standard bicycle pump. The simple heater setup required no electricity or battery and was capable of maintaining the temperature at 65°C±2°C for 55 min, suitable for repeatable HDA amplification. Experiments were performed to explore the adaptability of the system for use in a range of ambient conditions. When compared to a traditional centrifuge extraction protocol and a laboratory thermocycler, this disposable, no power platform achieved approximately the same lower limit of detection (1.25×10(-2) pg of C. difficile DNA) while requiring much less raw material and a fraction of the lab infrastructure and cost. This proof of concept study could greatly impact the accessibility of molecular assays for applications in global health. PMID:23555883

  10. Oncogene amplification detected by in situ hybridization in radiation induced rat skin tumors. [C-myc:a3

    Energy Technology Data Exchange (ETDEWEB)

    Yi Jin.

    1991-02-01

    Oncogene activation may play an important role in radiation induced carcinogenesis. C-myc oncogene amplification was detected by in situ hybridization in radiation-induced rat skin tumors, including squamous and basal cell carcinomas. In situ hybridization was performed with a biotinylated human c-myc third exon probe, visualized with an avidin-biotinylated alkaline phosphate detection system. No c-myc oncogene amplification was detected in normal rat skin at very early times after exposure to ionizing radiation, which is consistent with the view that c-myc amplification is more likely to be related to carcinogenesis than to normal cell proliferation. The incorporation of tritiated thymidine into the DNA of rat skin cells showed that the proliferation of epidermal cells reached a peak on the seventh day after exposure to ionizing radiation and then decreased. No connection between the proliferation of epidermal cell and c-myc oncogene amplification in normal or irradiated rat skin was found. The results indicated that c-myc amplification as measured by in situ hybridization was correlated with the Southern bolt results, but only some of the cancer cells were amplified. The c-myc positive cells were distributed randomly within regions of the tumor and exhibited a more uniform nuclear structure in comparison to the more vacuolated c-myc negative cells. No c-myc signal was detected in unirradiated normal skin or in irradiated skin cells near the tumors. C-myc amplification appears to be cell or cell cycle specific within radiation-induced carcinomas. 28 refs., 3 figs., 3 tabs.

  11. Screening for EGFR amplifications with a novel method and their significance for the outcome of glioblastoma patients.

    Directory of Open Access Journals (Sweden)

    Michał Bieńkowski

    Full Text Available Glioblastoma is a highly aggressive tumour of the central nervous system, characterised by poor prognosis irrespective of the applied treatment. The aim of our study was to analyse whether the molecular markers of glioblastoma (i.e. TP53 and IDH1 mutations, CDKN2A deletion, EGFR amplification, chromosome 7 polysomy and EGFRvIII expression could be associated with distinct prognosis and/or response to the therapy. Moreover, we describe a method which allows for a reliable, as well as time- and cost-effective, screening for EGFR amplification and chromosome 7 polysomy with quantitative Real-Time PCR at DNA level. In the clinical data, only the patient's age had prognostic significance (continuous: HR = 1.04; p<0.01. At the molecular level, EGFRvIII expression was associated with a better prognosis (HR = 0.37; p = 0.04. Intriguingly, EGFR amplification was associated with a worse outcome in younger patients (HR = 3.75; p<0.01 and in patients treated with radiotherapy (HR = 2.71; p = 0.03. We did not observe any difference between the patients with the amplification treated with radiotherapy and the patients without such a treatment. Next, EGFR amplification was related to a better prognosis in combination with the homozygous CDKN2A deletion (HR = 0.12; p = 0.01, but to a poorer prognosis in combination with chromosome 7 polysomy (HR = 14.88; p = 0.01. Importantly, the results emphasise the necessity to distinguish both mechanisms of the increased EGFR gene copy number (amplification and polysomy. To conclude, although the data presented here require validation in different groups of patients, they strongly advocate the consideration of the patient's tumour molecular characteristics in the selection of the therapy.

  12. Quantification of human epidermal growth factor receptor 2 immunohistochemistry using the Ventana Image Analysis System: correlation with gene amplification by fluorescence in situ hybridization: the importance of instrument validation for achieving high (>95%) concordance rate.

    Science.gov (United States)

    Dennis, Jake; Parsa, Rezvaneh; Chau, Donnie; Koduru, Prasad; Peng, Yan; Fang, Yisheng; Sarode, Venetia Rumnong

    2015-05-01

    The use of computer-based image analysis for scoring human epidermal growth factor receptor 2 (HER2) immunohistochemistry (IHC) has gained a lot of interest recently. We investigated the performance of the Ventana Image Analysis System (VIAS) in HER2 quantification by IHC and its correlation with fluorescence in situ hybridization (FISH). We specifically compared the 3+ IHC results using the manufacturer's machine score cutoffs versus laboratory-defined cutoffs with the FISH assay. Using the manufacturer's 3+ cutoff (VIAS score; 2.51 to 3.5), 181/536 (33.7%) were scored 3+, and FISH was positive in 147/181 (81.2%), 2 (1.1%) were equivocal, and 32 (17.6%) were FISH (-). Using the laboratory-defined 3+ cutoff (VIAS score 3.5), 52 (28.7%) cases were downgraded to 2+, of which 29 (55.7%) were FISH (-), and 23 (44.2%) were FISH (+). With the revised cutoff, there were improvements in the concordance rate from 89.1% to 97.0% and in the positive predictive value from 82.1% to 97.6%. The false-positive rate for 3+ decreased from 9.0% to 0.8%. Six of 175 (3.4%) IHC (-) cases were FISH (+). Three cases with a VIAS score 3.5 showed polysomy of chromosome 17. In conclusion, the VIAS may be a valuable tool for assisting pathologists in HER2 scoring; however, the positive cutoff defined by the manufacturer is associated with a high false-positive rate. This study highlights the importance of instrument validation/calibration to reduce false-positive results.

  13. Modeling Loss Amplification After Devastating Disasters

    Science.gov (United States)

    Boissonnade, A. C.; Muir Wood, R.

    2008-05-01

    With the catastrophic events that occurred in 2004 and 2005 came the realization that Catastrophic (Cat) loss models were not properly modeling insured losses and their associated uncertainty. One reason was that major catastrophes were generally characterized by losses caused by the primary initiating events. Such approaches are not adequate when losses can result from the compounded impacts of scenarios of secondary cascading events (physical, economic, social and political) that can have much larger impacts than those due to the primary events themselves. Situations where more and more cascading events can occur will result in different outcomes, some leading to extreme loss events, generally referred as Super Cats. These situations occurred in December 2004 with the Sumatra earthquake and tsunami and in August 2005 with hurricane Katrina and resulting New Orleans flooding. A review of historical events shows that these events are not exceptions. Modeling such scenarios adds new levels of complexity and different perspectives in the understanding of characterizing and assessing impacts of catastrophic events. Modeling economic consequences of extreme events can be improved by developing scenarios of cascades of secondary events triggered by the primary event(s). The likelihood of each scenario should be modeled, along with the hazards of primary and secondary events and resulting losses with their impacts to the different stakeholders. In addition, it is also important to model the impacts of the hazards on the infrastructure and the resulting disruption to the residents and the local economy because these can result in additional losses. This paper describes current work with the goals of better modeling the full economic impacts from catastrophic events, and of a more comprehensive treatment of uncertainty. We will present approaches for modeling loss amplification that account for all the ways in which the cost incurred for a certain level of damage due to a

  14. Measurement-based noiseless linear amplification for quantum communication

    Science.gov (United States)

    Chrzanowski, H. M.; Walk, N.; Haw, J. Y.; Thearle, O.; Assad, S. M.; Janousek, J.; Hosseini, S.; Ralph, T. C.; Symul, T.; Lam, P. K.

    2014-11-01

    Entanglement distillation is an indispensable ingredient in extended quantum communication networks. Distillation protocols are necessarily non-deterministic and require non-trivial experimental techniques such as noiseless amplification. We show that noiseless amplification could be achieved by performing a post-selective filtering of measurement outcomes. We termed this protocol measurement-based noiseless linear amplification (MBNLA). We apply this protocol to entanglement that suffers transmission loss of up to the equivalent of 100km of optical fibre and show that it is capable of distilling entanglement to a level stronger than that achievable by transmitting a maximally entangled state through the same channel. We also provide a proof-of-principle demonstration of secret key extraction from an otherwise insecure regime via MBNLA. Compared to its physical counterpart, MBNLA not only is easier in term of implementation, but also allows one to achieve near optimal probability of success.

  15. Amplification of spin waves by the spin Seebeck effect

    Science.gov (United States)

    Padrón-Hernández, E.; Azevedo, A.; Rezende, S. M.

    2012-04-01

    We observe amplification of spin-wave packets propagating along a film of single-crystal yttrium iron garnet (YIG) subject to a transverse temperature gradient. The spin waves are excited and detected with standard techniques used to study volume or surface magnetostatic waves in the 1-2 GHz frequency range. Amplification gains larger than 20 are observed in a YIG film heated by a current of 20 mA in a Pt layer in a simple YIG/Pt bilayer. The amplification is attributed to the action of a spin-transfer thermal torque acting on the magnetization that opposes the relaxation and which is created by spin currents generated through the spin Seebeck effect. The experimental data are interpreted with a spin-wave model.

  16. Information Limited Oligonucleotide Amplification Assay for Affinity-Based, Parallel Detection Studies.

    Directory of Open Access Journals (Sweden)

    Harish Bokkasam

    Full Text Available Molecular communication systems encounter similar constraints as telecommunications. In either case, channel crosstalk at the receiver end will result in information loss that statistical analysis cannot compensate. This is because in any communication channel there is a physical limit to the amount of information that can be transmitted. We present a novel and simple modified end amplification (MEA technique to generate reduced and defined amounts of specific information in form of short fragments from an oligonucleotide source that also contains unrelated and redundant information. Our method can be a valuable tool to investigate information overflow and channel capacity in biomolecular recognition systems.

  17. Identification of genetic elements associated with EPSPs gene amplification.

    Directory of Open Access Journals (Sweden)

    Todd A Gaines

    Full Text Available Weed populations can have high genetic plasticity and rapid responses to environmental selection pressures. For example, 100-fold amplification of the 5-enolpyruvylshikimate-3-phosphate synthase (EPSPS gene evolved in the weed species Amaranthus palmeri to confer resistance to glyphosate, the world's most important herbicide. However, the gene amplification mechanism is unknown. We sequenced the EPSPS gene and genomic regions flanking EPSPS loci in A. palmeri, and searched for mobile genetic elements or repetitive sequences. The EPSPS gene was 10,229 bp, containing 8 exons and 7 introns. The gene amplification likely proceeded through a DNA-mediated mechanism, as introns exist in the amplified gene copies and the entire amplified sequence is at least 30 kb in length. Our data support the presence of two EPSPS loci in susceptible (S A. palmeri, and that only one of these was amplified in glyphosate-resistant (R A. palmeri. The EPSPS gene amplification event likely occurred recently, as no sequence polymorphisms were found within introns of amplified EPSPS copies from R individuals. Sequences with homology to miniature inverted-repeat transposable elements (MITEs were identified next to EPSPS gene copies only in R individuals. Additionally, a putative Activator (Ac transposase and a repetitive sequence region were associated with amplified EPSPS genes. The mechanism controlling this DNA-mediated amplification remains unknown. Further investigation is necessary to determine if the gene amplification may have proceeded via DNA transposon-mediated replication, and/or unequal recombination between different genomic regions resulting in replication of the EPSPS gene.

  18. The Efficiency of Magnetic Field Amplification at Shocks by Turbulence

    Science.gov (United States)

    Ji(), Suoqing; Oh, S. Peng; Ruszkowski, M.; Markevitch, M.

    2016-09-01

    Turbulent dynamo field amplification has often been invoked to explain the strong field strengths in thin rims in supernova shocks (˜100 μG) and in radio relics in galaxy clusters (˜μG). We present high resolution MHD simulations of the interaction between pre-shock turbulence, clumping and shocks, to quantify the conditions under which turbulent dynamo amplification can be significant. We demonstrate numerically converged field amplification which scales with Alfvén Mach number, B/B_0 ∝ M_A, up to M_A ˜ 150. This implies that the post-shock field strength is relatively independent of the seed field. Amplification is dominated by compression at low M_A, and stretching (turbulent amplification) at high M_A. For high M_A, the B-field grows exponentially and saturates at equipartition with turbulence, while the vorticity jumps sharply at the shock and subsequently decays; the resulting field is orientated predominately along the shock normal (an effect only apparent in 3D and not 2D). This agrees with the radial field bias seen in supernova remnants. By contrast, for low M_A, field amplification is mostly compressional, relatively modest, and results in a predominantly perpendicular field. The latter is consistent with the polarization seen in radio relics. Our results are relatively robust to the assumed level of gas clumping. Our results imply that the turbulent dynamo may be important for supernovae, but is only consistent with the field strength, and not geometry, for cluster radio relics. For the latter, this implies strong pre-existing B-fields in the ambient cluster outskirts.

  19. RT-ARMS-qPCR定量测定线粒体耳聋患者mtDNA A1555G位点突变%Quantitation of mitochondrial DNA A1555G mutation by real time amplification refractory mutation system quantitative PCR

    Institute of Scientific and Technical Information of China (English)

    程祖建; 杨滨; 江凌; 刘奇才; 陈静; 陈勇; 欧启水

    2008-01-01

    目的 探讨RT-ARMS-qPCR(real time amplification refractory mutation system quantitativePCR)系统定量测定线粒体DNA(mitochondrial DNA,mtDNA)A1555G位点突变在线粒体耳聋发病机制研究中的价值.方法 以PeR扩增含mtDNA 1555位点的片段,并将其克隆到pGEM-T Easy载体上,构建质粒标准品;在引物3'端插入错配碱基AC建立RT-ARMS-qPCR系统,对含突变型和野生型mtDNA 1555位点片段的12例线粒体耳聋患者进行定量检测.结果 RT-ARMS-qPCR系统在检测1个含野生型mtDNA 1555的重组质粒DNA模板时,其批内变异系数(CV)为1.34%,批间CV为1.96%,线性范围为102-108拷贝/ul;突变型或野生型引物只特异扩增相对应的序列,特异性好;突变型/野生型mtDNA拷贝数及突变型所占的百分比与耳聋的严重程度相关(r=0.771,P=0.003),突变型mtDNA所占的比例越高,耳聋程度越严重.结论 RT-ARMS-qPCR系统适合于定量检测mtDNAA1555G点突变的线粒体DNA片段,结果特异、稳定、准确.线粒体耳聋的严重程度与含突变型和野生型mtDNA 1555位点的拷贝数比例有关.%Objective To develop a real time amplification refractory system(RT-ARMS-qPCR) quantitative PCR method with SYBR Green I to assess the mtDNA A1555G mutation. Methods A specific fragment flanking mtDNA 1555 site was amplified with PCR and ligated into a pGEM Easy T vector. Serial dilutions of the plasmid DNA were quantified the actual copy numbers were assessed using RF-ARMS-qPCR with SYBR Green I. RF-ARMS-qPCR was established with mismatched base pairs at 3' in the primer todetect the copy number of mtDNA containing wild or mutant mtDNA. The specificity of amplified products was checked by melting curve analysis. Results The intra- and interassay variation was 1.34% and 1.96%, respectively when the assay was used to detect 1 copy/ul recombinant template of plasmid. Thequantitative standard curve showed that the assay had good linear correlation from 102 copies/ul to108

  20. The emergence of surface-based Arctic amplification

    Directory of Open Access Journals (Sweden)

    M. C. Serreze

    2009-02-01

    Full Text Available Rises in surface and lower troposphere air temperatures through the 21st century are projected to be especially pronounced over the Arctic Ocean during the cold season. This Arctic amplification is largely driven by loss of the sea ice cover, allowing for strong heat transfers from the ocean to the atmosphere. Consistent with observed reductions in sea ice extent, fields from both the NCEP/NCAR and JRA-25 reanalyses point to emergence of surface-based Arctic amplification in the last decade.

  1. Nanoscale field effect transistor for biomolecular signal amplification

    CERN Document Server

    Chen, Yu; Hong, Mi K; Erramilli, Shyamsunder; Rosenberg, Carol; Mohanty, Pritiraj

    2008-01-01

    We report amplification of biomolecular recognition signal in lithographically defined silicon nanochannel devices. The devices are configured as field effect transistors (FET) in the reversed source-drain bias region. The measurement of the differential conductance of the nanowire channels in the FET allows sensitive detection of changes in the surface potential due to biomolecular binding. Narrower silicon channels demonstrate higher sensitivity to binding due to increased surface-to-volume ratio. The operation of the device in the negative source-drain region demonstrates signal amplification. The equivalence between protein binding and change in the surface potential is described.

  2. Ultra-broad bandwidth parametric amplification at degeneracy.

    Science.gov (United States)

    Limpert, J; Aguergaray, C; Montant, S; Manek-Hönninger, I; Petit, S; Descamps, D; Cormier, E; Salin, F

    2005-09-19

    We report on a novel approach of ultra-broad bandwidth parametric amplification around degeneracy. A bandwidth of up to 400 nm centered around 800 nm is amplified in a BBO crystal by using chirped pump pulses with a bandwitdth as broad as 10 nm. A supercontinuum signal is generated in a microstructured fiber, having to first order a quadratic chirp, which is necessary to ensure temporal overlap of the interacting waves over this broad bandwidth. Furthermore, we discuss the potential of this approach for an octave-spanning parametric amplification.

  3. Methods for microbial DNA extraction from soil for PCR amplification

    Directory of Open Access Journals (Sweden)

    Yeates C

    1998-01-01

    Full Text Available Amplification of DNA from soil is often inhibited by co-purified contaminants. A rapid, inexpensive, large-scale DNA extraction method involving minimal purification has been developed that is applicable to various soil types (1. DNA is also suitable for PCR amplification using various DNA targets. DNA was extracted from 100g of soil using direct lysis with glass beads and SDS followed by potassium acetate precipitation, polyethylene glycol precipitation, phenol extraction and isopropanol precipitation. This method was compared to other DNA extraction methods with regard to DNA purity and size.

  4. Theory of light amplification in active fishnet metamaterials

    CERN Document Server

    Hamm, Joachim M; Tsakmakidis, Kosmas L; Hess, Ortwin

    2011-01-01

    We establish a theory that traces light amplification in an active double-fishnet metamaterial back to its microscopic origins. Based on ab initio calculations of the light/plasmon fields we extract energy rates and conversion efficiencies associated with gain/loss channels directly from Poynting's theorem. We find that for the negative refactive index mode both radiative loss and gain outweigh resistive loss by more than a factor of two, opening a broad window of steady-state amplification (free of instabilities) accessible even when a gain reduction close to the metal is taken into account.

  5. Raman amplification in the broken-wave regime

    CERN Document Server

    Farmer, John P

    2015-01-01

    In regimes far beyond the wavebreaking theshold of Raman amplification, we show that significant amplifcation can occur after the onset of wavebreaking, before phase mixing destroys the coupling between pump and probe. The amplification efficiency in this regime is therefore strongly dependent on the energy-transfer rate when wavebreaking occurs, and is, as such, sensitive to both the probe amplitude and profile. In order to access the higher-efficiency broken-wave regime, a short, intense probe is required. Parameter scans show the marked difference in behaviour compared to below wavebreaking, where longer, more energetic pulses lead to improved efficiencies.

  6. Divided-pulse amplification to the joule level.

    Science.gov (United States)

    Webb, Benjamin; Azim, Ahmad; Bodnar, Nathan; Chini, Michael; Shah, Lawrence; Richardson, Martin

    2016-07-01

    Divided-pulse amplification (DPA) has proven to be a valuable tool in scaling the peak power of diode-pumped ytterbium-doped amplifiers to beyond the single-pulse threshold for parasitic nonlinear effects. DPA enables the amplification of picosecond pulses in solid-state amplifiers with limited bandwidth beyond the single-pulse damage threshold. In this Letter, we demonstrate DPA of picosecond pulses in a flashlamp-pumped Nd:YAG amplifier for the first time, to the best of our knowledge, yielding a combined pulse energy of 167 mJ. PMID:27367113

  7. Amplification of Short Pulse High Power UV Laser

    Institute of Scientific and Technical Information of China (English)

    2001-01-01

    At recent year, with the development of CPA and other amplification technology, laser intensity achieves great increase and laser power can be high to PW(105) now, this ultrashort pulse lasers offer scientists a route to investigate laser-matter interaction in an absolute new regime.So far the researches on ultrashort pulse laser-matter interaction concentrated on infrared regime, yet ultraviolet laser has the advantage in intense field physics and ICF researches for its short wavelength and less nonlinear effects. KrF excimer is the best medium in UV ultrashort pulse amplification for its small saturation energy and high contrast ratio accessible.

  8. Ultra-broad bandwidth parametric amplification at degeneracy.

    Science.gov (United States)

    Limpert, J; Aguergaray, C; Montant, S; Manek-Hönninger, I; Petit, S; Descamps, D; Cormier, E; Salin, F

    2005-09-19

    We report on a novel approach of ultra-broad bandwidth parametric amplification around degeneracy. A bandwidth of up to 400 nm centered around 800 nm is amplified in a BBO crystal by using chirped pump pulses with a bandwitdth as broad as 10 nm. A supercontinuum signal is generated in a microstructured fiber, having to first order a quadratic chirp, which is necessary to ensure temporal overlap of the interacting waves over this broad bandwidth. Furthermore, we discuss the potential of this approach for an octave-spanning parametric amplification. PMID:19498762

  9. Amplification and Damping of Environmental Signals in Intensively Managed Landscapes

    Science.gov (United States)

    Belmont, P.; Kumarasamy, K.; Kelly, S. A.; Vaughan, A. A.; Call, B.

    2015-12-01

    Landscapes transmit pulses of water, sediment and solutes through the terrestrial environment and network of stream channels. The timing, frequency and magnitude of these pulses depend on inputs of water, energy and rock/soil as well as a multitude of critical zone processes that may modulate the signal. Therefore, the potential for a landscape to generate and transmit these pulses changes over long timescales, primarily as a function of climate and local base level rise or fall. Humans have profoundly altered many critical zone processes that govern these environmental signals, often targeting rate-limiting processes for the purpose of enhancing economic productivity and/or reducing financial risk. These alterations are especially evident in the intensively managed landscapes of the Midwestern US, where vegetation change, soil tillage, and pervasive modifications of the surface and subsurface drainage system have substantially changed water, sediment and nutrient fluxes. Effects, in terms of amplification or damping of environmental signals, are strongly dependent on landscape setting, and often non-linear. Hysteresis and sensitivity may hinder the return to the initial state when perturbations have reached a certain threshold. We draw from multiple examples in the upper Midwestern US to illustrate, at a basic level, the mechanisms by which landscape evolution establishes the template for generation and transmission of environmental signals and furthermore how humans have altered critical zone processes to optimize specific landscape outputs, often at the expense of modifying the rate and/or magnitude of many other landscape outputs. We present a conceptual model and discuss implications for mathematical modeling of water, sediment and nutrient fluxes to guide watershed management and restoration.

  10. An enzymatic signal amplification system for calorimetric studies of cellobiohydrolases

    DEFF Research Database (Denmark)

    Murphy, Leigh; Baumann, Martin Johannes; Borch, Kim;

    2010-01-01

    such as solubilized cellulose derivates, soluble chromogenic, and flourogenic oligomeric substrates are often employed even though they do not reflect the natural insoluble substrate hydrolysis. Thermochemical methods using, for example, isothermal titration calorimetry (ITC) yield data where the primary observable...

  11. High-Performance Control in Radio Frequency Power Amplification Systems

    DEFF Research Database (Denmark)

    Høyerby, Mikkel Christian Kofod

    and demonstrated. On subcomponent level, solutions for implementing the envelope tracking power supply are proposed and demonstrated. A number of buck-type DCDC converter topologies are investigated and compared, with the objective of showing the trade-offs involved between switching frequency, control bandwidth...

  12. Highly efficient amplification of chronic wasting disease agent by protein misfolding cyclic amplification with beads (PMCAb.

    Directory of Open Access Journals (Sweden)

    Chad J Johnson

    Full Text Available Protein misfolding cyclic amplification (PMCA has emerged as an important technique for detecting low levels of pathogenic prion protein in biological samples. The method exploits the ability of the pathogenic prion protein to convert the normal prion protein to a proteinase K-resistant conformation. Inclusion of Teflon® beads in the PMCA reaction (PMCAb has been previously shown to increase the sensitivity and robustness of detection for the 263 K and SSLOW strains of hamster-adapted prions. Here, we demonstrate that PMCAb with saponin dramatically increases the sensitivity of detection for chronic wasting disease (CWD agent without compromising the specificity of the assay (i.e., no false positive results. Addition of Teflon® beads increased the robustness of the PMCA reaction, resulting in a decrease in the variability of PMCA results. Three rounds of serial PMCAb allowed detection of CWD agent from a 6.7 × 10(-13 dilution of 10% brain homogenate (1.3 fg of source brain. Titration of the same brain homogenate in transgenic mice expressing cervid prion protein (Tg(CerPrP1536(+/- mice allowed detection of CWD agent from the 10(-6 dilution of 10% brain homogenate. PMCAb is, thus, more sensitive than bioassay in transgenic mice by a factor exceeding 10(5. Additionally, we are able to amplify CWD agent from brain tissue and lymph nodes of CWD-positive white-tailed deer having Prnp alleles associated with reduced disease susceptibility.

  13. Highly efficient amplification of chronic wasting disease agent by protein misfolding cyclical amplification with beads (PMCAb)

    Science.gov (United States)

    Johnson, Chad J.; Aiken, Judd M.; McKenzie, Debbie; Samuel, Michael D.; Pedersen, Joel A.

    2012-01-01

    Protein misfolding cyclic amplification (PMCA) has emerged as an important technique for detecting low levels of pathogenic prion protein in biological samples. The method exploits the ability of the pathogenic prion protein to convert the normal prion protein to a proteinase K-resistant conformation. Inclusion of Teflon® beads in the PMCA reaction (PMCAb) has been previously shown to increase the sensitivity and robustness of detection for the 263 K and SSLOW strains of hamster-adapted prions. Here, we demonstrate that PMCAb with saponin dramatically increases the sensitivity of detection for chronic wasting disease (CWD) agent without compromising the specificity of the assay (i.e., no false positive results). Addition of Teflon® beads increased the robustness of the PMCA reaction, resulting in a decrease in the variability of PMCA results. Three rounds of serial PMCAb allowed detection of CWD agent from a 6.7×10−13 dilution of 10% brain homogenate (1.3 fg of source brain). Titration of the same brain homogenate in transgenic mice expressing cervid prion protein (Tg(CerPrP)1536+/−mice) allowed detection of CWD agent from the 10−6 dilution of 10% brain homogenate. PMCAb is, thus, more sensitive than bioassay in transgenic mice by a factor exceeding 105. Additionally, we are able to amplify CWD agent from brain tissue and lymph nodes of CWD-positive white-tailed deer having Prnp alleles associated with reduced disease susceptibility.

  14. Identifying components of the hair-cell interactome involved in cochlear amplification

    Directory of Open Access Journals (Sweden)

    Cheatham MaryAnn

    2009-03-01

    Full Text Available Abstract Background Although outer hair cells (OHCs play a key role in cochlear amplification, it is not fully understood how they amplify sound signals by more than 100 fold. Two competing or possibly complementary mechanisms, stereocilia-based and somatic electromotility-based amplification, have been considered. Lacking knowledge about the exceptionally rich protein networks in the OHC plasma membrane, as well as related protein-protein interactions, limits our understanding of cochlear function. Therefore, we focused on finding protein partners for two important membrane proteins: Cadherin 23 (cdh23 and prestin. Cdh23 is one of the tip-link proteins involved in transducer function, a key component of mechanoelectrical transduction and stereocilia-based amplification. Prestin is a basolateral membrane protein responsible for OHC somatic electromotility. Results Using the membrane-based yeast two-hybrid system to screen a newly built cDNA library made predominantly from OHCs, we identified two completely different groups of potential protein partners using prestin and cdh23 as bait. These include both membrane bound and cytoplasmic proteins with 12 being de novo gene products with unknown function(s. In addition, some of these genes are closely associated with deafness loci, implying a potentially important role in hearing. The most abundant prey for prestin (38% is composed of a group of proteins involved in electron transport, which may play a role in OHC survival. The most abundant group of cdh23 prey (55% contains calcium-binding domains. Since calcium performs an important role in hair cell mechanoelectrical transduction and amplification, understanding the interactions between cdh23 and calcium-binding proteins should increase our knowledge of hair cell function at the molecular level. Conclusion The results of this study shed light on some protein networks in cochlear hair cells. Not only was a group of de novo genes closely associated

  15. Whole genome amplification and its impact on CGH array profiles

    Directory of Open Access Journals (Sweden)

    Meldrum Cliff

    2008-07-01

    Full Text Available Abstract Background Some array comparative genomic hybridisation (array CGH platforms require a minimum of micrograms of DNA for the generation of reliable and reproducible data. For studies where there are limited amounts of genetic material, whole genome amplification (WGA is an attractive method for generating sufficient quantities of genomic material from miniscule amounts of starting material. A range of WGA methods are available and the multiple displacement amplification (MDA approach has been shown to be highly accurate, although amplification bias has been reported. In the current study, WGA was used to amplify DNA extracted from whole blood. In total, six array CGH experiments were performed to investigate whether the use of whole genome amplified DNA (wgaDNA produces reliable and reproducible results. Four experiments were conducted on amplified DNA compared to unamplified DNA and two experiments on unamplified DNA compared to unamplified DNA. Findings All the experiments involving wgaDNA resulted in a high proportion of losses and gains of genomic material. Previously, amplification bias has been overcome by using amplified DNA in both the test and reference DNA. Our data suggests that this approach may not be effective, as the gains and losses introduced by WGA appears to be random and are not reproducible between different experiments using the same DNA. Conclusion In light of these findings, the use of both amplified test and reference DNA on CGH arrays may not provide an accurate representation of copy number variation in the DNA.

  16. Direct Extraction and Amplification of DNA from Soil.

    Science.gov (United States)

    Trevors, Jack T.; Leung, K.

    1998-01-01

    Presents an exercise that describes the direct extraction and purification of DNA from a small soil sample. Also discusses the subsequent amplification of a 343-bp Tn7 transposate A gene fragment (tnsA) from a strain of Pseudomonas aureofaciens 3732RNL11. Contains 21 references. (DDR)

  17. Soft x-ray amplification in an ablative capillary discharge

    International Nuclear Information System (INIS)

    Soft x-ray amplification in CVI 18.2 nm line is observed in an ablative UHMW-PE capillary discharge. The gain coefficient is measured to be 1.9 cm-1. The electron density is about 2 x 1019 cm-3. This indicates that capillary discharge pumping device can be a source for a compact soft x-ray laser. (author)

  18. Controlling the amplification of chirality in hydrogen-bonded assemblies

    NARCIS (Netherlands)

    Mateos-Timoneda, Miguel A.; Crego-Calama, Mercedes; Reinhoudt, David N.

    2005-01-01

    The amplification of chirality (a high enantiomeric or diastereomeric excess induced by a small initial amount of chiral bias) on hydrogen-bonded assemblies has been studied using “sergeants-and-soldiers” experiments under thermodynamically controlled conditions. Here it is shown that different subs

  19. Ultrafast double-pulse parametric amplification for precision Ramsey metrology

    NARCIS (Netherlands)

    Kandula, D.Z.; Renault, A.A.L.; Gohle, C.; Wolf, A.L.; Witte, S.; Hogervorst, W.; Ubachs, W.M.G.; Eikema, K.S.E.

    2008-01-01

    We demonstrate phase stable, mJ-level parametric amplification of pulse pairs originating from a Ti: Sapphire frequency comb laser. The amplifier-induced phase shift between the pulses has been determined interferometrically with an accuracy of approximate to 10 mrad. Typical phase shifts are on the

  20. Loss of KLF14 triggers centrosome amplification and tumorigenesis.

    Science.gov (United States)

    Fan, Guangjian; Sun, Lianhui; Shan, Peipei; Zhang, Xianying; Huan, Jinliang; Zhang, Xiaohong; Li, Dali; Wang, Tingting; Wei, Tingting; Zhang, Xiaohong; Gu, Xiaoyang; Yao, Liangfang; Xuan, Yang; Hou, Zhaoyuan; Cui, Yongping; Cao, Liu; Li, Xiaotao; Zhang, Shengping; Wang, Chuangui

    2015-01-01

    Centrosome amplification is frequent in cancer, but the underlying mechanisms remain unclear. Here we report that disruption of the Kruppel-like factor 14 (KLF14) gene in mice causes centrosome amplification, aneuploidy and spontaneous tumorigenesis. Molecularly, KLF14 functions as a transcriptional repressor of Plk4, a polo-like kinase whose overexpression induces centrosome overduplication. Transient knockdown of KLF14 is sufficient to induce Plk4-directed centrosome amplification. Clinically, KLF14 transcription is significantly downregulated, whereas Plk4 transcription is upregulated in multiple types of cancers, and there exists an inverse correlation between KLF14 and Plk4 protein expression in human breast and colon cancers. Moreover, KLF14 depletion promotes AOM/DSS-induced colon tumorigenesis. Our findings reveal that KLF14 reduction serves as a mechanism leading to centrosome amplification and tumorigenesis. On the other hand, forced expression of KLF14 leads to mitotic catastrophe. Collectively, our findings identify KLF14 as a tumour suppressor and highlight its potential as biomarker and therapeutic target for cancer. PMID:26439168