WorldWideScience

Sample records for chemotaxonomy

  1. Chemotaxonomy of the genus Stemphylium

    DEFF Research Database (Denmark)

    Olsen, Kresten Jon Kromphardt; Andersen, Birgitte

    The filamentous fungal genus Stemphylium (Anamophic Pleospora) is often found on various crops, and especially the common animal feed plant Medicago sativa (alfalfa) is often infected by this plant pathogen. With this in mind it is important to consider what consequences such a contamination can...... via HPLC-UV/VIS-MS analysis as a third method for identification and to investigate the chemical potential of the genus Stemphylium. A total of 253 unique compounds were used for chemotaxonomy and the majority of these were unknown compounds....

  2. Cuticular Hydrocarbons of Orchid Bees Males: Interspecific and Chemotaxonomy Variation

    Science.gov (United States)

    dos Santos, Aline Borba; do Nascimento, Fábio Santos

    2015-01-01

    Recent studies have investigated the composition of compounds that cover the cuticle in social insects, but few studies have focused on solitary bees. Cuticular hydrocarbons may provide a tool for chemotaxonomy, and perhaps they can be used as a complement to morphology and genetic characters in phylogenetic studies. Orchid bees (Tribe Euglossini) are a highly diverse group of Neotropical bees with more than 200 species. Here, the cuticular hydrocarbons of 17 species were identified and statistical analysis revealed 108 compounds, which allowed for the taxonomic classification according to the genera. The most significant compounds discriminating the four genera were (Z)-9-pentacosene, (Z,Z)-pentatriacontene-3, (Z)-9-tricosene, and (Z)-9-heptacosene. The analyses demonstrated the potential use of CHCs to identify different species. PMID:26713612

  3. Use of metabolomics for the chemotaxonomy of legume-associated Ascochyta and allied genera

    Science.gov (United States)

    Chemotaxonomy and the comparative analysis of metabolic features of fungi have the potential to provide valuable information relating to ecology and evolution, but have not been fully explored in fungal biology. Here, we investigated the chemical diversity of legume-associated Ascochyta and Phoma sp...

  4. Chemotaxonomy and pharmacology of Gentianaceae

    DEFF Research Database (Denmark)

    Jensen, Søren Rosendal; Schripsema, Jan

    2002-01-01

    the remaining six are members of the Gentianeae. Based on the above results, a tentative list of chemical characteristics for the tribes of the Gentianaceae is presented. Finally, some pharmacologically interesting properties of plant extracts or compounds from taxa within Gentianaceae are listed....

  5. Chemotaxonomy and evolution of Plantago L

    DEFF Research Database (Denmark)

    Rønsted, Nina; Franzyk, Henrik; Mølgaard, Per;

    2003-01-01

    In continuation of our investigations of the genus Plantago L. (Plantaginaceae), sixteen species were investigated with respect to watersoluble glycosides. The iridoids auroside, strictoloside and globularicisin, as well as poliumoside, 3-[(4-beta-D-glucopyranosyloxy)phenyl]propionic acid and 2...

  6. Note on the chemotaxonomy of Huaceae

    NARCIS (Netherlands)

    Beijersbergen, A.

    1972-01-01

    A comparative study of acetone, ethanol, and hydrolysis extracts of Hua gahonii Pierre ( Bos 6677, leaves) and Afrostyrax lepidophyllus Mildbr. (Brookman Amissah s.n., bark) has been carried out. The presence of the following compounds could not be demonstrated: gallic acid, ellagic acid, leucoantho

  7. Chemotaxonomy of the genus Nuxia (Buddlejaceae)

    DEFF Research Database (Denmark)

    Jensen, Søren Rosendal

    1999-01-01

    An investigation of two species of Nuxia (Buddlejaceae) showed that this genus is characterised by the presence of the eight-carbon iridoid glucoside unedoside and/or its derivatives. From N. floribunda was isolated unedoside, nuxioside (6-O-a-L-rhamnopyranosyl-unedoside) and 2''-acetyl-3...

  8. Chemotaxonomy of Plantago. Iridoid glucosides and caffeoyl phenylethanoid glycosides

    DEFF Research Database (Denmark)

    Rønsted, N.; Göbel, E.; Franzyk, Henrik;

    2000-01-01

    Data for 34 species of Plantago (Plantaginaceae), including subgen. Littorella (=Littorella uniflora), have been collected with regard to their content of iridoid glucosides and caffeoyl phenylethanoid glycosides (CPGs). In the present work, 21 species were investigated for the first time and many...... are present in all species investigated. With regard to the iridoids, the distribution patterns showed a good correlation with the classification of Rahn. Thus, aucubin is typical for the whole genus, while bartsioside and catalpol as well as 5-substituted iridoids are each characteristic for a subgenus...... in the family. Finally, the close relationship between Plantago and Veronica suggested by chloroplast DNA sequence analysis, could be corroborated by the common occurrence of the rare 8,9-unsaturated iridoids in these two genera. (C) 2000 Elsevier Science Ltd. All rights reserved....

  9. Chemotaxonomy of heterocystous cyanobacteria using FAME profiling as species markers.

    Science.gov (United States)

    Shukla, Ekta; Singh, Satya Shila; Singh, Prashant; Mishra, Arun Kumar

    2012-07-01

    The fatty acid methyl ester (FAME) analysis of the 12 heterocystous cyanobacterial strains showed different fatty acid profiling based on the presence/absence and the percentage of 13 different types of fatty acids. The major fatty acids viz. palmitic acid (16:0), hexadecadienoic acid (16:2), stearic acid (18:0), oleic acid (18:1), linoleic (18:2), and linolenic acid (18:3) were present among all the strains except Cylindrospermum musicola where oleic acid (18:1) was absent. All the strains showed high levels of polyunsaturated fatty acid (PUFAs; 41-68.35%) followed by saturated fatty acid (SAFAs; 1.82-40.66%) and monounsaturated fatty acid (0.85-24.98%). Highest percentage of PUFAs and essential fatty acid (linolenic acid; 18:3) was reported in Scytonema bohnerii which can be used as fatty acid supplement in medical and biotechnological purpose. The cluster analysis based on FAME profiling suggests the presence of two distinct clusters with Euclidean distance ranging from 0 to 25. S. bohnerii of cluster I was distantly related to the other strains of cluster II. The genotypes of cluster II were further divided into two subclusters, i.e., IIa with C. musicola showing great divergence with the other genotypes of IIb which was further subdivided into two groups. Subsubcluster IIb(1) was represented by a genotype, Anabaena sp. whereas subsubcluster IIb(2) was distinguished by two groups, i.e., one group having significant similarity among their three genotypes showed distant relation with the other group having closely related six genotypes. To test the validity of the fatty acid profiles as a marker, cluster analysis has also been generated on the basis of morphological attributes. Our results suggest that FAME profiling might be used as species markers in the study of polyphasic approach based taxonomy and phylogenetic relationship. PMID:21761281

  10. Chemotaxonomy of Veroniceae and its allies in the Plantaginaceae

    DEFF Research Database (Denmark)

    Taskova, Rilka Mladenova; Gotfredsen, Charlotte Held; Jensen, Søren Rosendal

    2006-01-01

    studied, 28 different iridoid glucosides and ten caffeoyl phenylethanoid glucosides (CPGs), as well as salidroside and arbutin were isolated and characterized by NMR; of these, five compounds were previously unknown. It was found that the representatives of Veroniceae, as well as Globularia, were...

  11. What’s really in our black raspberry products? – chemotaxonomy by anthocyanin

    Science.gov (United States)

    This presentation will focus on the phytochemical portion of our research into breeding commercial black raspberry (Rubus occidentalis L.; blackcap) cultivars with better fruit quality. A North American native, it was traditionally used as a food and a natural colorant, but renewed US consumer inter...

  12. Effect of freshwater influx on phytoplankton in the Mandovi estuary (Goa, India) during monsoon season: Chemotaxonomy

    Digital Repository Service at National Institute of Oceanography (India)

    Parab, S.G.; Matondkar, S.G.P.; Gomes, H.R.; Goes, J.I.

    in the Niskin sampler was carefully drained into acid-washed carboys. Samples were then immediately transported under cold and dark conditions for analysis to the laboratory approximately 10 km away where they were carefully sub-sampled in duplicate... in duplicate in 500 ml plastic bottles. Samples were then carefully fixed with a few drops of Lugol’s iodine, preserved with 3% buffered formaldehyde and then stored under dark and cool conditions until the time of analysis [16]. 2.4. HPLC Pigment Analysis...

  13. 3D chemotaxonomy of corals using fatty acid biomarkers: latitude, longitude and depth

    OpenAIRE

    Figueiredo, Cátia Alexandra Alves, 1989-

    2014-01-01

    Tese de mestrado. Biologia (Ecologia Marinha). Universidade de Lisboa, Faculdade de Ciências, 2014 A população mundial de corais tem vindo a diminuir ao longo dos anos, tanto em abundância como em diversidade. Esta diminuição deve-se à sobre-exploração dos recursos marinhos, à poluição, à acidificação dos oceanos e ao aquecimento global (principal responsável pelo processo de lixiviação). Sendo que aqueles organismos possuem grande importância ecológica e económica, o interesse no seu estu...

  14. Protein chemotaxonomy. XIII. Amino acid sequence of ferredoxin from Panax ginseng.

    Science.gov (United States)

    Mino, Yoshiki

    2006-08-01

    The complete amino acid sequence of [2Fe-2S] ferredoxin from Panax ginseng (Araliaceae) has been determined by automated Edman degradation of the entire S-carboxymethylcysteinyl protein and of the peptides obtained by enzymatic digestion. This ferredoxin has a unique amino acid sequence, which includes an insertion of Tyr at the 3rd position from the amino-terminus and a deletion of two amino acid residues at the carboxyl terminus. This ferredoxin had 18 differences in its amino acid sequence compared to that of Petroselinum sativum (Umbelliferae). In contrast, 23-33 differences were observed compared to other dicotyledonous plants. This suggests that Panax ginseng is related taxonomically to umbelliferous plants. PMID:16880642

  15. Secondary metabolites of Bagassa guianensis Aubl. wood: A study of the chemotaxonomy of the Moraceae family

    OpenAIRE

    Royer, Mariana; Herbette, Gaëtan; Eparvier, Véronique; Beauchêne, Jacques; Thibaut, Bernard; Stien, Didier

    2010-01-01

    International audience; In order to explain the durability of the Moraceae plant family, phytochemistry of Bagassa guianensis was performed. Ethyl acetate extract was obtained from the heartwood and 18 secondary metabolites were isolated, including 6 moracins [6-O-methyl-moracin M, 6-O-methyl-moracin N and moracin Z; previously identified: moracin M, moracin N and moracin P], 8 stilbenoids [presently identified: ( )-epialboctalol and arachidin 4; previously identified: alboctalol, trans-resve...

  16. Secondary metabolites of Bagassa guianensis Aubl. wood: a study of the chemotaxonomy of the Moraceae family.

    Science.gov (United States)

    Royer, Mariana; Herbette, Gaëtan; Eparvier, Véronique; Beauchêne, Jacques; Thibaut, Bernard; Stien, Didier

    2010-10-01

    In order to explain the durability of the Moraceae plant family, phytochemistry of Bagassa guianensis was performed. Ethyl acetate extract was obtained from the heartwood and 18 secondary metabolites were isolated, including 6 moracins [6-O-methyl-moracin M, 6-O-methyl-moracin N and moracin Z; previously identified: moracin M, moracin N and moracin P], 8 stilbenoids [presently identified: (-)-epialboctalol and arachidin 4; previously identified: alboctalol, trans-resveratrol, arachidin 2, trans-oxyresveratrol and artogomezianol], 3 previously identified flavonoids, steppogenin, katuranin and dihydromorin, beta-sitosterol and resorcinol. Previous studies suggest that stilbenoids are responsible for the natural durability of wood. Our study has determined that B. guianensis is closely related to Morus sp. in phylogeny and should be included in the Moreae sensu stricto tribe of the Moraceae family.

  17. The use of secondary metabolite profiling in chemotaxonomy of filamentous fungi

    DEFF Research Database (Denmark)

    Frisvad, Jens Christian; Andersen, Birgitte; Thrane, Ulf

    2008-01-01

    distribution throughout the fungal kingdom. However, this is the very quality that makes secondary metabolites so useful in classification and identification. Four groups of organisms are particularly good producers of secondary metabolites: plants, fungi, lichen fungi, and actinomycetes, whereas yeasts...

  18. Using LC and Hierarchical Cluster Analysis as Tools to Distinguish Timbó Collections into Two Deguelia Species: A Contribution to Chemotaxonomy

    Directory of Open Access Journals (Sweden)

    Danielle da Costa

    2016-04-01

    Full Text Available The species Deguelia utilis and Deguelia rufescens var. urucu, popularly known as “timbó,” have been used for many years as rotenone sources in insecticide formulations. In this work, a method was developed and validated using a high-performance liquid chromatography-photodiode array (HPLC-PDA system, and results were analyzed using hierarchical cluster analysis (HCA. By quantifying the major rotenoids of these species, it was possible to establish a linear relation between them. The ratio between the concentrations of rotenone and deguelin for D. utilis is approximately 1:0.8, respectively, while for D. rufescens var. urucu it is 2:1. These results may help to distinguish these species contributing to their taxonomic identification.

  19. (Un)targeted metabolomics in Asteraceae: probing the applicability of essential-oil profiles of senecio L. (Senecioneae) taxa in chemotaxonomy.

    Science.gov (United States)

    Radulović, Niko S; Mladenović, Marko Z; Blagojević, Polina D

    2014-09-01

    The possible applicability of (un)targeted metabolomics (volatile metabolites) for revealing taxonomic/evolutionary relationships among Senecio L. species (Asteraceae; tribe Senecioneae) was explored. Essential-oil compositional data of selected Senecio/Senecioneae/Asteraceae taxa (93 samples in total) were mutually compared by means of multivariate statistical analysis (MVA), i.e., agglomerative hierarchical clustering and principal component analysis. The MVA input data set included the very first compositional data on the essential oil extracted from the aerial parts of S. viscosus L. as well as on four different Serbian populations of S. vernalis Waldst. & Kit. (oils from aerial parts and roots; eight samples in total). This metabolomic screening of Senecio/Senecioneae/Asteraceae species (herein presented results and data from the literature) pointed to short-chain alk-1-enes (e.g., oct-1-ene, non-1-ene, and undec-1-ene), with up to now restricted general occurrence in Plantae, as characteristic chemotaxonomic markers/targets for future metabolomic studies of Senecio/Senecioneae taxa. The MVA additionally showed that the evolution of the terpene metabolism (volatile mono- and sesquiterpenoids) within the Asteraceae tribe Senecioneae was not genera specific. However, the MVA did confirm plant-organ specific production/accumulation of volatiles within S. vernalis and suggested the existence of at least two volatile chemotypes for this species. PMID:25238075

  20. Chemotaxonomy of three genera of the Annonaceae family using self-organizing maps and {sup 13}C NMR data of diterpenes

    Energy Technology Data Exchange (ETDEWEB)

    Scotti, Luciana; Tavares, Josean Fechine; Silva, Marcelo Sobral da [Universidade Federal da Paraiba (UFPB), Joao Pessoa, PB (Brazil). Dept. de Ciencias Farmaceuticas; Falcao, Emanuela Viana; Silva, Luana de Morais e; Soares, Gabriela Cristina da Silva; Scotti, Marcus Tullius, E-mail: mtscotti@ccae.ufpb.br [Universidade Federal da Paraiba (UFPB), Rio Tinto, PB (Brazil). Dept. de Engenharia e Meio Ambiente

    2012-07-01

    The Annonaceae family is distributed throughout Neotropical regions of the world. In Brazil, it covers nearly all natural formations particularly Annona, Xylopia and Polyalthia and is characterized chemically by the production of sources of terpenoids (mainly diterpenes), alkaloids, steroids, polyphenols and, flavonoids. Studies from {sup 13}C NMR data of diterpenes related with their botanical occurrence were used to generate self-organizing maps. Results corroborate those in the literature obtained from morphological and molecular data for three genera and the model can be used to project other diterpenes. Therefore, the model produced can predict which genera are likely to contain a compound. (author)

  1. Using LC and Hierarchical Cluster Analysis as Tools to Distinguish Timbó Collections into Two Deguelia Species: A Contribution to Chemotaxonomy.

    Science.gov (United States)

    da Costa, Danielle; E Silva, Consuelo; Pinheiro, Aline; Frommenwiler, Débora; Arruda, Mara; Guilhon, Giselle; Alves, Cláudio; Arruda, Alberto; Da Silva, Milton

    2016-01-01

    The species Deguelia utilis and Deguelia rufescens var. urucu, popularly known as "timbó," have been used for many years as rotenone sources in insecticide formulations. In this work, a method was developed and validated using a high-performance liquid chromatography-photodiode array (HPLC-PDA) system, and results were analyzed using hierarchical cluster analysis (HCA). By quantifying the major rotenoids of these species, it was possible to establish a linear relation between them. The ratio between the concentrations of rotenone and deguelin for D. utilis is approximately 1:0.8, respectively, while for D. rufescens var. urucu it is 2:1. These results may help to distinguish these species contributing to their taxonomic identification. PMID:27144548

  2. Revue bibliographique: les méthodes chimiques d'identification et de classification des champignons

    Directory of Open Access Journals (Sweden)

    Verscheure M.

    2002-01-01

    Full Text Available Chemotaxonomy of fungi : a review. For few years, advancements of molecular methods and analytical techniques enabled scientists to realise a classification of microorganisms based on biochemical characteristics. This classification, called chemotaxonomy, includes molecular methods and chemical methods which provide additional data and lead to a better identification and/or classification.

  3. Revue bibliographique: les méthodes chimiques d'identification et de classification des champignons

    OpenAIRE

    Verscheure M.; Lognay G.; Marlier M.

    2002-01-01

    Chemotaxonomy of fungi : a review. For few years, advancements of molecular methods and analytical techniques enabled scientists to realise a classification of microorganisms based on biochemical characteristics. This classification, called chemotaxonomy, includes molecular methods and chemical methods which provide additional data and lead to a better identification and/or classification.

  4. Importance of Terpenoids and Essential Oils in Chemotaxonomic Approach

    Directory of Open Access Journals (Sweden)

    Vidita V. Bhargava

    2013-06-01

    Full Text Available Chemotaxonomy of plants involves the study of chemical variation in different types of plants and use of this information in classification of plants. Chemotaxonomy consists of the investigation of the distribution of chemical compounds or groups of biosynthetically related compounds in series of related or supposedly related plants. Since ancient times, the essential oil and terpenoids of many aromatic plants have been used as bioactive ingredients in drug, food, perfumery and cosmetic formulations all over the world and so it is worthwhile to study their role in chemotaxonomy. They are distributed in families like Myrtaceae, Lauraceae, Rutaceae, Lamiaceae, Asteraceae, Umbelliferae, Verbenaceae and Piperaceae. To detect even traces of chemical compounds during chemical analysis sophisticated techniques have also been introduced in chemotaxonomy of medicinal plants.

  5. Importance of Terpenoids and Essential Oils in Chemotaxonomic Approach

    OpenAIRE

    Vidita V. Bhargava; Shashank C. Patel; Kruti S. Desai

    2013-01-01

    Chemotaxonomy of plants involves the study of chemical variation in different types of plants and use of this information in classification of plants. Chemotaxonomy consists of the investigation of the distribution of chemical compounds or groups of biosynthetically related compounds in series of related or supposedly related plants. Since ancient times, the essential oil and terpenoids of many aromatic plants have been used as bioactive ingredients in drug, food, perfumery and cosmetic formu...

  6. Schisandraceae

    NARCIS (Netherlands)

    Saunders, Richard M.K.

    1997-01-01

    In this family two genera are distinguished, Kadsura and Schisandra. The former has 9 species in Malesia, the latter only 2. The general part of the treatment consists of 6 pages and contains a paragraph on pollen morphology by R.W.J.M. van der Ham. Phytochemistry and chemotaxonomy are summarized in

  7. Revue bibliographique: les methodes chimiques d'identification et de classification des champignons.

    OpenAIRE

    Verscheure, M.; Lognay, Georges; Marlier, M.

    2002-01-01

    For few years, advancements of molecular methods and analytical techniques enabled scientists to realise a classification of microorganisms based on biochemical characteristics. This classification, called chemotaxonomy, includes molecular methods and chemical methods which provide additional data and lead to a better identification and/or classification.

  8. Integrated analytical approaches towards toxic algal natural products discovery

    DEFF Research Database (Denmark)

    Larsen, Thomas Ostenfeld; Rasmussen, Silas Anselm; Gedsted Andersen, Mikael;

    demonstrated that phenotypic based chemotaxonomy can be successfully used as the intial step in selection of talented strains for testing in various bioassays, using multivariate methods for clustering of whole profiles of metabolites. The second and very important step in the discovery process...

  9. Recent trends in rapid dereplication of natural product extracts:an update

    Institute of Scientific and Technical Information of China (English)

    Fikre Mammo; Milkyas Endale

    2015-01-01

    Natural products are the prominent sources of drugs to combat various infectious diseases. The rapid progress of multi-resistance and pan-resistant pathogens to various medicines represents today a major challenge. The search for novel natural products requires a quick and efficient approach to distinguish novel compounds from the known ones, a process called dereplication. Dereplication strategy is generic and time-saving, avoids isolation/purification of known compounds, enables an efficient liquid chromatography peak annotation of most of the studied compounds and can be well adapted for plant chemotaxonomy, phytochemical screening and metabolite profiling. In this review, recent developments of hyphenated techniques towards dereplication of active compounds, chemotaxonomy, metabolite profiling and rapid detection of novel compounds in medicinal plant extracts are presented.

  10. Portuguese Thymbra and Thymus species volatiles: chemical composition and biological activities.

    Science.gov (United States)

    Figueiredo, A C; Barroso, J G; Pedro, L G; Salgueiro, L; Miguel, M G; Faleiro, M L

    2008-01-01

    Thymbra capitata and Thymus species are commonly known in Portugal as thyme and they are currently used as culinary herbs, as well as for ornamental, aromatizing and traditional medicinal purposes. The present work reports on the state of the art on the information available on the taxonomy, ethnobotany, cell and molecular biology of the Portuguese representatives of these genera and on the chemotaxonomy and antibacterial, antifungal and antioxidant activities of their essential oils and other volatile-containing extracts. PMID:19075695

  11. Research progress in the phytochemistry and biology of Ilex pharmaceutical resources

    OpenAIRE

    Dacheng Hao; Xiaojie Gu; Peigen Xiao; Zhanguo Liang; Lijia Xu; Yong Peng

    2013-01-01

    Ilex is a botanical source for various health-promoting and pharmaceutically active compounds that have been used in traditional Chinese medicine and food for thousands of years. Increasing interest in Ilex pharmaceutical and food resources has led to additional discoveries of terpenoids, saponins, polyphenols (especially flavonoids), glycosides, and many other compounds in various Ilex species, and to investigation of their chemotaxonomy, molecular phylogeny and pharmacology. In continuation...

  12. Application of Modern Experimental Technique to Solve Morphological Complexity in Plants Taxonomy

    Directory of Open Access Journals (Sweden)

    SURANTO

    2000-07-01

    Full Text Available Modern taxonomy has two approaches, i.e. classical and experimental taxonomy. Classical taxonomy uses morphological characters, while experimental taxonomy uses broader methods including chemistry, physics and mathematics, in the form of laboratory data that are revealed together with the progress of optical technique (microscope, chemistry methods (chromatography, electrophoresis, etc. Modern taxonomy tends to use series of interrelated data. More data used would result in more validity and give better clarification of taxonomic status. A lot of modern taxonomic data such as palynology, cytotaxonomy (cytology, chemical constituent (chemotaxonomy, isozyme and DNA sequencing were used recently.

  13. Structure of late summer phytoplankton community in the Firth of Lorn (Scotland) using microscopy and HPLC-CHEMTAX

    Science.gov (United States)

    Brito, Ana C.; Sá, Carolina; Mendes, Carlos R.; Brand, Tim; Dias, Ana M.; Brotas, Vanda; Davidson, Keith

    2015-12-01

    The Firth of Lorn is at the mouth of one of Scotland's largest fjordic sea lochs, Loch Linnhe. This sea loch, which is fed by a number of other inner lochs, supplies a significant flow of freshwater, which frequently causes the stratification of the water column. To investigate how environmental conditions influence the spatial distribution of phytoplankton in this region water samples were collected for phytoplankton (pigments and microscopy), and other environmental variables including nutrients. Chemotaxonomy was used to estimate the contribution of different taxonomic groups to total chlorophyll a (phytoplankton biomass index). Good agreement was obtained between chemotaxonomy and microscopy data. The highest levels of chlorophyll a (˜2.6 mg m-3) were found in the vicinity of Oban Bay, where cryptophytes, the most abundant group, dinoflagellates and other flagellates thrived in the stratified water column. Centric diatoms, mainly Chaetoceros sp. and Skeletonema costatum, were associated with NH4 and SiO2 concentrations and stratification, while pennate diatoms, mainly Cylindrotheca sp. and Nitzchia sp., were found to be associated with NO3 + NO2 and high surface mixed layer depths. Four diatom groups were identified in accordance to their surface to volume ratios, as well as their affinity to environmental parameters (nutrients) and turbulence. This study used a combination of physico-chemical data, classical microscopy methods (appropriate for large cells > 20 μm) and HPLC-CHEMTAX approaches (for large and small cells) to evaluate the distribution of phytoplankton functional groups in a fjordic coastal area.

  14. Chemometric analysis applied in 1H HR-MAS NMR and FT-IR data for chemotaxonomic distinction of intact lichen samples

    International Nuclear Information System (INIS)

    This paper describes the potentiality of chemometric analysis applied in 1H HR-MAS NMR and FT-IR data for lichen chemotaxonomic investigations. Lichens present a difficult morphologic differentiation and the chemical analyses are frequently employed for their taxonomic classification, mainly due to the secondary metabolites to be relatively constant for these organisms. The lichen chemotaxonomic classification is usually carried out by color reactions, chromatography, fluorescence and mass spectrometry analysis, where the identification is obtained by one or more techniques. There are some papers which use the carbohydrate content in chemotaxonomy investigation. However, the majority of these techniques involve laborious and time consuming sample pre-treatment. This work focuses on application of 1H high resolution magic angle spinning - nuclear magnetic resonance (HR-MAS NMR) and Fourier transform infrared (FT-IR) associated with chemometric analysis to intact samples. In comparison to other traditional techniques, 1H HR-MAS NMR and FT-IR allied with chemometrics provided a fast and economic method for lichen chemotaxonomy. Both methods were useful for lichen analysis and permitted the satisfactory distinction among families, genera and species, although better results were achieved for FT-IR data

  15. Research progress in the phytochemistry and biology of Ilex pharmaceutical resources

    Directory of Open Access Journals (Sweden)

    Dacheng Hao

    2013-02-01

    Full Text Available Ilex is a botanical source for various health-promoting and pharmaceutically active compounds that have been used in traditional Chinese medicine and food for thousands of years. Increasing interest in Ilex pharmaceutical and food resources has led to additional discoveries of terpenoids, saponins, polyphenols (especially flavonoids, glycosides, and many other compounds in various Ilex species, and to investigation of their chemotaxonomy, molecular phylogeny and pharmacology. In continuation of our studies on Ilex pharmacology and phylogeny, we review the phytochemistry, chemotaxonomy, molecular biology and phylogeny of Ilex species and their relevance to health-promotion and therapeutic efficacy. The similarity and dissimilarity between Ilex paraguariensis, the source plant of mate tea, and the source plants of large-leaved Kudingcha (e.g., Ilex kudingcha and Ilex latifolia are discussed. It is essential to utilize emerging technologies in non-Camellia tea studies to promote the sustainable utilization of Ilex resources and the identification and development of novel compounds with potential health and clinical utility. Systems biology and “-omics” technologies will play an increasingly important role in pharmaceutical and food research on the bioactive compounds of Ilex species.

  16. Intrageneric differences in the four stereoisomers of stenusine in the rove beetle genus, Stenus (Coleoptera, Staphylinidae)

    Science.gov (United States)

    Lusebrink, Inka; Burkhardt, Dirk; Gedig, Thomas; Dettner, Konrad; Mosandl, Armin; Seifert, Karlheinz

    2007-02-01

    Most species of the rove beetle genus Stenus employ the spreading alkaloid stenusine as an escape mechanism on water surfaces. In the case of danger, they emit stenusine from their pygidial glands, and it propels them over the water very quickly. Stenusine is a chiral molecule with four stereoisomers: (2' R,3 R)-, (2' S,3 R)-, (2' S,3 S)-, and (2' R,3 S)-stenusine. The percentile ratio of these four isomers is only known for the most common species of the genus: Stenus comma. With the intention of determining the stereoisomer ratios of five additional species from the two subgenera, Stenus and Hypostenus, we used GC/mass spectrometry measurements with a chiral phase . The results showed that the ratio differs among the genus. These findings can be a basis for chemotaxonomy. It is also possible that the biological function of stenusine, e.g., as antibiotic or fungicide, varies with changing stereoisomer composition.

  17. Rapid identification of osmolytes in tropical microalgae and cyanobacteria by (1)H HR-MAS NMR spectroscopy.

    Science.gov (United States)

    Zea Obando, Claudia; Linossier, Isabelle; Kervarec, Nelly; Zubia, Mayalen; Turquet, Jean; Faÿ, Fabienne; Rehel, Karine

    2016-06-01

    In this study, we report the chemical characterization of 47 tropical microalgae and cyanobacteria by HR-MAS. The generated data confirm the interest of HR-MAS as a rapid screening technique with the major advantage of its easiness. The sample is used as powder of freeze-dried microalgae without any extraction process before acquisition. The spectral fingerprints of strains are then tested as variables for a chemotaxonomy study to discriminate cyanobacteria and dinoflagellates. The individual factor map generated by PCA analysis succeeds in separating the two groups, essentially thanks to the presence of specific carbohydrates. Furthermore, more resolved signals enable to identify many osmolytes. More precisely the characteristics δ of 2-O-alpha-D-glucosylglycerol (GG) are observed in all 21 h-MAS spectra of tropical cyanobacteria. After specific extraction, complementary analysis by 1D and 2D-NMR spectroscopies validates the identification of this osmolyte. PMID:27130130

  18. Chemical constituents and bioactivity of Formosan lauraceous plants

    Directory of Open Access Journals (Sweden)

    Hsun-Shuo Chang

    2016-04-01

    Full Text Available Taiwan is rich in lauraceous plants. A review of 197 references based on the chemical analysis and bioactivity of indigenous lauraceous plants carried out by native scientists from 1963 to 2014 has been compiled. About 303 new compounds and thousands of known compounds comprising alkaloids and non-alkaloids with diverse structures have been isolated or identified from indigenous plants belonging to the 11 lauraceous genera. The volatile components, however, have been excluded from this review. This review provides an overview of the past efforts of Taiwan scientists working on secondary metabolites and their bioactivity in native lauraceous plants. The potential of lauraceous plants worthy of further study is also noted. The contents will be helpful for the chemotaxonomy of Lauraceae and be of value for the development of native Formosan lauraceous plants.

  19. Alkaloids from the Tribe Bocconieae (Papaveraceae: A Chemical and Biological Review

    Directory of Open Access Journals (Sweden)

    Xuelong Yu

    2014-08-01

    Full Text Available The Bocconieae tribe, consisting of only the genera Macleaya and Bocconia, possesses significant economic and medicinal value and plays an important role in health management for people in developing countries. During the past decades, research on metabolites and relative pharmacology, including the isolation and identification of a variety of molecules, has shed light on the tribe. Among those molecules, isoquinoline alkaloids, and their antimicrobial, antifungal, and anti-inflammatory activities are especially noteworthy. This paper presents a comprehensive compilation of current research progress, with emphasis on the alkaloids and their distribution, phytochemical and pharmacological investigation, toxicity and side effects, related chemotaxonomy and future use prospects, and hopefully provides a valuable reference as an effort to promote further exploration and application of this tribe.

  20. Current results on biological activities of lichen secondary metabolites: a review.

    Science.gov (United States)

    Molnár, Katalin; Farkas, Edit

    2010-01-01

    Lichens are symbiotic organisms of fungi and algae or cyanobacteria. Lichen-forming fungi synthesize a great variety of secondary metabolites, many of which are unique. Developments in analytical techniques and experimental methods have resulted in the identification of about 1050 lichen substances (including those found in cultures). In addition to their role in lichen chemotaxonomy and systematics, lichen secondary compounds have several possible biological roles, including photoprotection against intense radiation, as well as allelochemical, antiviral, antitumor, antibacterial, antiherbivore, and antioxidant action. These compounds are also important factors in metal homeostasis and pollution tolerance of lichen thalli. Although our knowledge of the contribution of these extracellular products to the success of the lichen symbiosis has increased significantly in the last decades, their biotic and abiotic roles have not been entirely explored. PMID:20469633

  1. 贝母药物资源的植物化学和生物学研究%Phytochemical and biological research of Fritillaria medicinal resources

    Institute of Scientific and Technical Information of China (English)

    郝大程; 顾晓洁; 肖培根; 彭勇

    2013-01-01

    贝母属药用植物含有多种药用化合物,在传统中医药中已应用上千年.近年对贝母药物资源的深入研究导致在多种贝母中发现更多的甾体生物碱、皂苷、萜类、糖苷和许多其它化合物,由此关于贝母的化学分类,分子系统发育和药理研究也日益增多.本文基于作者的贝母药用亲缘研究,评述近年贝母属植物化学、化学分类、分子生物和系统发育研究的进展,及其与贝母药效的关联.通过检索文献总结了贝母研究涉及的多种技术,用基于细胞核和质体DNA标记的系统发育分析推断了川贝,伊贝等复合群内部的相互关系和其与其它中国贝母物种的关系,并明确了中国贝母与国外贝母之间的关系.指出化学分类与分子系统发育结果的不一致并讨论了原因.深入研究更多的贝母物种对于贝母药物资源的可持续利用和寻找新的治疗用化合物十分重要.系统生物学和组学技术将对今后贝母药用化合物研究的深入起到关键作用.%The genus Fritillaria is a botanical source for various pharmaceutically active components,which have been commonly used in traditional Chinese medicine for thousands of years.Increasing interest in Fritillaria medicinal resources has led to additional discoveries of steroidal alkaloids,saponins,terpenoids,glycosides and many other compounds in various Fritillaria species,and to investigations on their chemotaxonomy,molecular phylogeny and pharmacology.In continuation of studies on Fritillaria pharmacophylogeny,the phytochemistry,chemotaxonomy,molecular biology and phylogeny of Fritillaria and their relevance to drug efficacy is reviewed.Literature searching is used to characterize the global scientific effort in the flexible technologies being applied.The interrelationship within Chinese Bei Mu species and between Chinese species,and species distributed outside of China,is clarified by the molecular phylogenetic inferences

  2. Penicillium strains isolated from Slovak grape berries taxonomy assessment by secondary metabolite profile.

    Science.gov (United States)

    Santini, Antonello; Mikušová, Petra; Sulyok, Michael; Krska, Rudolf; Labuda, Roman; Srobárová, Antónia

    2014-11-01

    The secondary metabolite profiles of microfungi of the genus Penicillium isolated from samples of grape berries collected in two different phases during two vegetative seasons in Slovakia is described to assess the taxonomy. Three Slovak vine regions have been selected for this study, based on their climatic differences and national economic importance. Cultures of microfungi isolated from berries were incubated on different selective media for macro and micromorphology identification. The species Penicillium brevicompactum, Penicillium crustosum, Penicillium chrysogenum, Penicillium expansum, Penicillium palitans and Penicillium polonicum were identified according to growth and morphology. The related strains were found to produce a broad spectrum of fungal metabolites, including roquefortine C, chaetoglobosin A, penitrem A, cyclopeptin, cyclopenin, viridicatin, methylviridicatin, verrucofortine, secalonic acid D, cyclopiazonic acid, fumigaclavine and mycophenolic acid. Chemotaxonomy was performed using high-performance liquid chromatography (HPLC) and mass spectrometry (MS). Dried grape berries were also analyzed allowing to assess the presence of patulin, roquefortine C and penicillic acid; this last one has been identified in dried berries but not in vitro.

  3. Isolation and screening of biopolymer-degrading microorganisms from northern Thailand.

    Science.gov (United States)

    Penkhrue, Watsana; Khanongnuch, Chartchai; Masaki, Kazuo; Pathom-Aree, Wasu; Punyodom, Winita; Lumyong, Saisamorn

    2015-09-01

    Forty agricultural soils were collected from Chiang Mai and Lampang provinces in northern Thailand. Bacteria, actinomycetes and fungi were isolated and screened for their ability to degrade polylactic acid (PLA), polycaprolactone (PCL) and poly(butylene succinate) (PBS) by the agar diffusion method. Sixty-seven actinomycetes, seven bacteria and five fungal isolates were obtained. The majority of actinomycetes were Streptomyces based on morphological characteristic, chemotaxonomy and 16S rRNA gene data. Seventy-nine microorganisms were isolated from 40 soil samples. Twenty-six isolates showed PLA-degradation (32.9 %), 44 isolates showed PBS-degradation (55.7 %) and 58 isolates showed PCL-degradation (73.4 %). Interestingly, 16 isolates (20.2 %) could degrade all three types of bioplastics used in this study. The Amycolatopsis sp. strain SCM_MK2-4 showed the highest enzyme activity for both PLA and PCL, 0.046 and 0.023 U/mL, respectively. Moreover, this strain produced protease, esterase and lipase on agar plates. Approximately, 36.7 % of the PLA film was degraded by Amycolatopsis sp. SCM_MK2-4 after 7 days of cultivation at 30 °C in culture broth. PMID:26135516

  4. HPLC-DAD-ESI-MS Analysis of Flavonoids from Leaves of Different Cultivars of Sweet Osmanthus.

    Science.gov (United States)

    Wang, Yiguang; Fu, Jianxin; Zhang, Chao; Zhao, Hongbo

    2016-01-01

    Osmanthus fragrans Lour. has traditionally been a popular ornamental plant in China. In this study, ethanol extracts of the leaves of four cultivar groups of O. fragrans were analyzed by high-performance liquid chromatography coupled with diode array detection (HPLC-DAD) and high-performance liquid chromatography with electrospray ionization and mass spectrometry (HPLC-ESI-MS). The results suggest that variation in flavonoids among O. fragrans cultivars is quantitative, rather than qualitative. Fifteen components were detected and separated, among which, the structures of 11 flavonoids and two coumarins were identified or tentatively identified. According to principal component analysis (PCA) and hierarchical cluster analysis (HCA) based on the abundance of these components (expressed as rutin equivalents), 22 selected cultivars were classified into four clusters. The seven cultivars from Cluster III ('Xiaoye Sugui', 'Boye Jingui', 'Wuyi Dangui', 'Yingye Dangui', 'Danzhuang', 'Foding Zhu', and 'Tianxiang Taige'), which are enriched in rutin and total flavonoids, and 'Sijigui' from Cluster II which contained the highest amounts of kaempferol glycosides and apigenin 7-O-glucoside, could be selected as potential pharmaceutical resources. However, the chemotaxonomy in this paper does not correlate with the distribution of the existing cultivar groups, demonstrating that the distribution of flavonoids in O. fragrans leaves does not provide an effective means of classification for O. fragrans cultivars based on flower color. PMID:27649119

  5. Structures, Biological Activities and Phylogenetic Relationships of Terpenoids from Marine Ciliates of the Genus Euplotes

    Directory of Open Access Journals (Sweden)

    Fernando Dini

    2010-07-01

    Full Text Available In the last two decades, large scale axenic cell cultures of the marine species comprising the family Euplotidae have resulted in the isolation of several new classes of terpenoids with unprecedented carbon skeletons including the (i euplotins, highly strained acetylated sesquiterpene hemiacetals; (ii raikovenals, built on the bicyclo[3.2.0]heptane ring system; (iii rarisetenolides and focardins containing an octahydroazulene moiety; and (iv vannusals, with a unique C30 backbone. Their complex structures have been elucidated through a combination of nuclear magnetic resonance spectroscopy, mass spectrometry, molecular mechanics and quantum chemical calculations. Despite the limited number of biosynthetic experiments having been performed, the large diversity of ciliate terpenoids has facilitated the proposal of biosynthetic pathways whereby they are produced from classical linear precursors. Herein, the similarities and differences emerging from the comparison of the classical chemotaxonomy approach based on secondary metabolites, with species phylogenesis based on genetic descriptors (SSU-rDNA, will be discussed. Results on the interesting ecological and biological properties of ciliate terpenoids are also reported.

  6. FTIR and py-GC-MS spectra of true-fern and seed-fern sphenopterids (Sydney Coalfield, Nova Scotia, Canada, Pennsylvanian)

    Science.gov (United States)

    Zodrow, E.L.; Mastalerz, Maria

    2002-01-01

    Sphenopterid specimens from the Late Pennsylvanian of Sydney Coalfield, Canada, are investigated by FTIR and py-GC-MS techniques as part of an on-going research project into the biochemistry and chemotaxonomy of Pennsylvanian-age pteridophylls. Included in the investigation are samples of the true-fern species Oligocarpia brongniartii and Zeilleria delicatula that are preserved as naturally macerated cuticles (NMC), and the seed-fern Eusphenopteris neuropteroides that is also preserved as a compression/impression. FTIR spectra of NMC seed-fern E. neuropteroides, and fern sphenopterid O. brongniartii are very similar, except that the latter does not have aromatic bands in the 700-900 cm-1 out-of-plane region, py-GC-MS show more aromatic compounds for the seed fern than for the two true-fern sphenopterids. Another difference between seed-fern and true-fern sphenopterids is a lower ratio of CH2 to CH3 in chemically treated specimens (CTC) for the seed fern. These observations suggest slightly higher aromaticity for the seed ferns, perhaps related to some chemotaxonomic differences. Comparison of FTIR and py-GC-MS characteristics of sphenopterids and other plant groups shows that these two techniques have potential to identifying chemotaxonomic signals from Carboniferous pteridophylls in general, although more data are needed to confirm this. ?? 2002 Elsevier Science B.V. All rights reserved.

  7. Raman spectroscopy study of calcium oxalate extracted from cacti stems.

    Science.gov (United States)

    Frausto-Reyes, Claudio; Loza-Cornejo, Sofia; Terrazas, Teresa; Terrazas, Tania; Miranda-Beltrán, María de la Luz; Aparicio-Fernández, Xóchitl; López-Macías, Brenda M; Morales-Martínez, Sandra E; Ortiz-Morales, Martín

    2014-01-01

    To find markers that distinguish the different Cactaceae species, by using near infrared Raman spectroscopy and scanning electron microscopy, we studied the occurrence, in the stem, of solid deposits in five Cactaceae species (Coryphantha clavata, Ferocactus latispinus, Opuntia ficus-indica, O. robusta, and O. strepthacantha) collected from their natural habitats from a region of México. The deposits in the tissues usually occurred as spheroidal aggregates, druses, or prismatic crystals. From the Raman spectra, the crystals were identified either as calcium oxalate monohydrate (CaC2O4·H2O) or calcium oxalate dihydrate (CaC2O4·2H2O). Opuntia species (subfamily Opuntioideae) showed the presence of CaC2O4·H2O, and the deposition of CaC2O4·2H2O was present in C. clavata and F. latispinus (subfamily Cactoideae, Cacteae tribe). As a punctual technique, Raman spectroscopy seems to be a useful tool to identify crystal composition. In addition to allowing the analysis of crystal morphology, this spectroscopic technique can be used to identify Cactaceae species and their chemotaxonomy. PMID:25280368

  8. 1株湿地稀有放线菌的多相分类鉴定%Polyphasic Taxonomy of a Rare Marine Actinomycetes

    Institute of Scientific and Technical Information of China (English)

    唐树戈; 张柳; 于基成; 刘秋; 齐小辉

    2014-01-01

    Strain S402003 was isolated from marine sediment collected from Yalu River in Dandong, Liaoning Province. Based on the polyphasic studies, including the morphology, physiological and biochemical characteristics, chemotaxonomy and 16S rRNA gene sequence analysis, the results showed that strain S402003 had lipase activity and was capable to reduce nitrate, belongs to the mild salt-tolerant and basophilic bacteria. It was primarily identified as Brevibacterium linens with the similarity 98.834%.%从鸭绿江滨海湿地样品中分离得到1株稀有海洋放线菌S402003,通过形态观察、培养特征、生理生化特征、化学组分鉴定以及16S rRNA基因序列分析对其进行多相分类鉴定。结果表明:该菌株具有脂酶活性,能还原硝酸盐,属于轻度耐盐、嗜碱菌。该菌株属于Brevibacterium linens,相似性为98.834%。

  9. Characterization of Mycolic Acids in Total Fatty Acid Methyl Ester Fractions from Mycobacterium Species by High Resolution MALDI-TOFMS.

    Science.gov (United States)

    Teramoto, Kanae; Suga, Mitsuo; Sato, Takafumi; Wada, Takayuki; Yamamoto, Atsushi; Fujiwara, Nagatoshi

    2015-01-01

    Mycolic acids (MAs) are characteristic components of bacteria in the suborder Corynebacterineae, such as Mycobacterium. MAs are categorized into subclasses based on their functional bases (cyclopropane ring, methoxy, keto, and epoxy group). Since MAs have heterogeneity among bacterial species, analyzing of MAs are required in the chemotaxonomic field. However, their structural analysis is not easy because of their long carbon-chain lengths and several functional groups. In this study, total fatty acid (FA) methyl ester (ME) fraction of M. tuberculosis H37Rv was analyzed by matrix-assisted laser desorption/ionization (MALDI) time-of-flight mass spectrometry (TOFMS) with a spiral ion trajectory (MALDI spiral-TOFMS). The distributions of carbon-chain length and their relative peak intensities were confirmed with those obtained by analysis of each subclass fraction which was separated from total FA ME fraction using thin-layer chromatography (TLC). The observed major peaks were reliably assigned as MAs owing to the high mass accuracy (errorodd-numbered carbon-chain MAs for the total FA ME fraction were consistent with those of MA subclass fractions. To visualize whole MAs, contour maps of relative peak intensities for whole MAs were created. The contour maps indicated the MA subclasses and their distributions of carbon-chains with relative peak intensities at a glance. Our proposed method allows simple characterization in a short time and thus enables the analysis of large numbers of samples, and it would contribute to the chemotaxonomy. PMID:26819906

  10. Streptomyces marokkonensis sp. nov., isolated from rhizosphere soil of Argania spinosa L.

    Science.gov (United States)

    Bouizgarne, B; Lanoot, B; Loqman, S; Spröer, C; Klenk, H-P; Swings, J; Ouhdouch, Y

    2009-11-01

    The novel actinomycete strain Ap1(T) was isolated from rhizosphere soil of the argan tree (Argania spinosa L.) in the south of Morocco. Strain Ap1(T) has been reported as a novel producer of the pentaene polyene macrolide isochainin, which strongly inhibits the growth of pathogenic yeasts and phytopathogenic fungi. Strain Ap1(T) shows a greyish-white aerial mycelium with chains of smooth-surfaced spores of the Spiralis type and a cell wall containing ll-diaminopimelic acid. Based on chemotaxonomy and morphological features, strain Ap1(T) was identified as a member of the genus Streptomyces. 16S rRNA gene sequence similarities based on almost-complete 16S rRNA gene sequences showed that strain Ap1(T) is closely associated with members of the Streptomyces violaceoruber species group (S. violaceoruber, S. coelescens, S. violaceorubidus, 'S. caesius', 'S. lividans', S. violaceolatus and S. humiferus) and others (Streptomyces aurantiogriseus, S. lienomycini, S. chattanoogensis, S. rubrogriseus and S. tendae). However, protein profiling, DNA-DNA hybridization and BOX-PCR fingerprinting proved a relationship above the species level. In addition, the phenotype also allowed for the differentiation of strain Ap1(T) from its closest neighbours. As a result of this polyphasic approach, we conclude that strain Ap1(T) represents a novel species of the genus Streptomyces, for which the name Streptomyces marokkonensis sp. nov. is proposed. The type strain is Ap1(T) (=R-22003(T) =LMG 23016(T) =DSM 41918(T)). PMID:19628602

  11. Characterization of Non-Anthocyanic Flavonoids in Some Hybrid Red Grape Extracts Potentially Interesting for Industrial Uses.

    Science.gov (United States)

    De Rosso, Mirko; Panighel, Annarita; Vedova, Antonio Dalla; Gardiman, Massimo; Flamini, Riccardo

    2015-01-01

    Previous studies showed that hybrid grapes often have qualitatively and quantitatively higher polyphenolic contents than the common V. vinifera grape varieties. In general, these compounds are studied for grape chemotaxonomy and for nutraceutical purposes due to their relevant antioxidant activity. Non-anthocyanic flavonoid composition of five red hybrid grape varieties produced by crossing of V. vinifera, V. aestivalis, V. cinerea, V. berlandieri, V. labrusca, V. lincecumii, and V. rupestris were studied by liquid chromatography/high-resolution mass spectrometry. Thirty-one compounds were identified, including methylnaringenin, a tetrahydroxy-dimethoxyflavanone-hexoside, two flavonols (quercetin and a pentahydroxyflavone isomer), 20 glycoside flavonols (four quercetin, two myricetin, two kaempferol, three isorhamnetin, one laricitrin, two syringetin, one kaempferide and two dihydroflavonol derivatives; myricetin-glucoside-glucuronide; myricetin-diglucoside; syringetin-dihexoside), three flavan-3-ols (-)-epicatechin, (+)-catechin, (-)-epicatechin gallate) and four proantocyanidins (procyanidin B1, procyanidin B2, procyanidin B3 or B4/B5, procyanidin T2 or T3/T4/C1). Seibel 19881, Seyve Villard 12-347 and Seyve Villard 29-399 were particularly rich in polyphenols. These findings emphasize that these grapes are especially interesting for the production of antioxidant extracts for nutraceutical and pharmaceutical uses. PMID:26445038

  12. Metabolic Profiling of Alpine and Ecuadorian Lichens

    Directory of Open Access Journals (Sweden)

    Verena K. Mittermeier

    2015-10-01

    Full Text Available Non-targeted 1H-NMR methods were used to determine metabolite profiles from crude extracts of Alpine and Ecuadorian lichens collected from their natural habitats. In control experiments, the robustness of metabolite detection and quantification was estimated using replicate measurements of Stereocaulon alpinum extracts. The deviations in the overall metabolite fingerprints were low when analyzing S. alpinum collections from different locations or during different annual and seasonal periods. In contrast, metabolite profiles observed from extracts of different Alpine and Ecuadorian lichens clearly revealed genus- and species-specific profiles. The discriminating functions determining cluster formation in principle component analysis (PCA were due to differences in the amounts of genus-specific compounds such as sticticin from the Sticta species, but also in the amounts of ubiquitous metabolites, such as sugar alcohols or trehalose. However, varying concentrations of these metabolites from the same lichen species e.g., due to different environmental conditions appeared of minor relevance for the overall cluster formation in PCA. The metabolic clusters matched phylogenetic analyses using nuclear ribosomal DNA (nrDNA internal transcribed spacer (ITS sequences of lichen mycobionts, as exemplified for the genus Sticta. It can be concluded that NMR-based non-targeted metabolic profiling is a useful tool in the chemo-taxonomy of lichens. The same approach could also facilitate the discovery of novel lichen metabolites on a rapid and systematical basis.

  13. Ascidian bioresources: common and variant chemical compositions and exploitation strategy - examples of Halocynthia roretzi, Styela plicata, Ascidia sp. and Ciona intestinalis.

    Science.gov (United States)

    Zhao, Yadong; Li, Jiebing

    2016-01-01

    To explore abundant marine ascidian bioresources, four species from two orders have been compared in their chemical compositions. After a universal separation of the animal body into two fractions, all tunics have been found rich in carbohydrate contents, while all inner body tissues are richer in proteins. Cellulose is present almost exclusively in the tunics and more in the order Stolidobranchia, while more sulfated polysaccharides are present in Phlebobranchia species. Almost all proteins are collagens with a high essential amino acid index and high delicious amino acid (DAA) content. All fractions also have high contents of good-quality fatty acids and trace minerals but low toxic element contents, with different sterols and glycosaminoglycans. There are species-specific characteristics observed for vanadium accumulation and sterol structures which are also meaningful for ascidian chemotaxonomy and resource exploitation. It is suggested that in addition to the present utilizations of tunics for cellulose production and of some species' inner body tissues as human food, one should explore all species' inner body tissues as human foods and all tunics as food or animal feed with the contained cellulose as dietary fiber. Collagens, sulfated polysaccharides, glycosaminoglycans, sterols and trace elements could be explored as byproducts for, e.g. pharmaceutical and chemical industries. PMID:27049617

  14. The nature and fate of natural resins in the geosphere XIII: a probable pinaceous resin from the early Cretaceous (Barremian, Isle of Wight

    Directory of Open Access Journals (Sweden)

    Anderson Ken B

    2008-01-01

    Full Text Available Abstract Terpenoid resin is produced by all families and most genera of the order Coniferales (the conifers, and the distribution of terpenes present in most conifer resins is characteristic of the originating family. Analyses of early Cretaceous (Barremian amber (fossil resin from the English Wealden, Isle of Wight, southern England, by pyrolysis-gas chromatography-mass spectrometry (Py-GC-MS, indicate a terpene distribution dominated by abietane- and labdane-type terpenes. Similar distributions are observed in some species of the extant family Pinaceae. The Pinaceae are well represented within the Wealden deposits of southern England, by only one (known species, Pityites solmsii (Seward Seward, whereas the macro-fossil record of these deposits is dominated by the extinct conifer family Cheirolepidiaceae, for which no resin chemistry has been reported. By analogy with modern materials, it is probable that the ambers found in these deposits are derived from an extinct member of the Pinaceae, but given the absence of evidence concerning the chemotaxonomy of the Cheirolepidiaceae, this family cannot be excluded a priori as a possible paleobotanical source. These ambers may therefore be assigned to either the Pinaceae or to the Cheirolepidiaceae. These samples are the oldest ambers to date to yield useful chemotaxonomic data.

  15. Characterization of Non-Anthocyanic Flavonoids in Some Hybrid Red Grape Extracts Potentially Interesting for Industrial Uses

    Directory of Open Access Journals (Sweden)

    Mirko De Rosso

    2015-10-01

    Full Text Available Previous studies showed that hybrid grapes often have qualitatively and quantitatively higher polyphenolic contents than the common V. vinifera grape varieties. In general, these compounds are studied for grape chemotaxonomy and for nutraceutical purposes due to their relevant antioxidant activity. Non-anthocyanic flavonoid composition of five red hybrid grape varieties produced by crossing of V. vinifera, V. aestivalis, V. cinerea, V. berlandieri, V. labrusca, V. lincecumii, and V. rupestris were studied by liquid chromatography/high-resolution mass spectrometry. Thirty-one compounds were identified, including methylnaringenin, a tetrahydroxy-dimethoxyflavanone-hexoside, two flavonols (quercetin and a pentahydroxyflavone isomer, 20 glycoside flavonols (four quercetin, two myricetin, two kaempferol, three isorhamnetin, one laricitrin, two syringetin, one kaempferide and two dihydroflavonol derivatives; myricetin-glucoside-glucuronide; myricetin-diglucoside; syringetin-dihexoside, three flavan-3-ols (−-epicatechin, (+-catechin, (−-epicatechin gallate and four proantocyanidins (procyanidin B1, procyanidin B2, procyanidin B3 or B4/B5, procyanidin T2 or T3/T4/C1. Seibel 19881, Seyve Villard 12-347 and Seyve Villard 29-399 were particularly rich in polyphenols. These findings emphasize that these grapes are especially interesting for the production of antioxidant extracts for nutraceutical and pharmaceutical uses.

  16. Qualitative and quantitative analyses of alkaloids in Uncaria species by UPLC-ESI-Q-TOF/MS.

    Science.gov (United States)

    Wang, Hai-Bo; Qi, Wen; Zhang, Lin; Yuan, Dan

    2014-01-01

    An ultra performance liquid chromatography (UPLC) coupled with quadrupole time-of-flight mass spectrometry (Q-TOF/MS) method has been optimized and established for the rapid analysis of the alkaloids in 22 samples originating from five Uncaria (U.) species. The accurate mass measurement of all the protonated molecules and subsequent fragment ions offers higher quality structural information for the interpretation of fragmentation pathways of the various groups of alkaloids. A total of 19 oxindole alkaloids, 16 indole alkaloids and 1 flavone were identified by co-chromatography of the sample extract with authentic standards, comparison of the retention time, characteristic molecular ions and fragment ions, or were tentatively identified by MS/MS determination. Moreover, the method was validated for the simultaneous quantification of the 24 components within 10.5 min. The potential chemical markers were identified for classification of the U. species samples by principal component analysis (PCA) and orthogonal partial least squared discriminant analysis (OPLS-DA). The results demonstrate the similarity and differences in alkaloids among the five U. species, which is helpful for the standardization and quality control of the medical materials of the U. Ramulus Cum Unics (URCU). Furthermore, with multivariate statistical analysis, the determined markers are more definite and useful for chemotaxonomy of the U. genus. PMID:25366313

  17. Studies on Chemical Composition, Antimicrobial and Antioxidant Activities of Five Thymus vulgaris L. Essential Oils

    Directory of Open Access Journals (Sweden)

    Emilia Mancini

    2015-07-01

    Full Text Available This study is aimed at assessing the essential oil composition, total phenolic content, antimicrobial and antioxidant activities of Thymus vulgaris collected in five different area of the Campania Region, Southern Italy. The chemical composition of the essential oils was studied by GC-flame ionization detector (FID and GC/MS; the biological activities were evaluated through determination of MIC and minimum bactericidal concentration (MBC and evaluation of antioxidant activity. In total, 134 compounds were identified. The oils were mainly composed of phenolic compounds, and all oils belonged to the chemotype thymol. The antimicrobial activity of the five oils was assayed against ten bacterial strains. The oils showed different inhibitory activity against some Gram-positive pathogens. The total phenol content in the essential oils ranged from 77.6–165.1 mg gallic acid equivalents (GAE/g. The results reported here may help to shed light on the complex chemotaxonomy of the genus Thymus. These oils could be used in many fields as natural preservatives of food and as nutraceuticals.

  18. Bacillus vanillea sp. nov., Isolated from the Cured Vanilla Bean.

    Science.gov (United States)

    Chen, Yong-gan; Gu, Feng-lin; Li, Ji-hua; Xu, Fei; He, Shu-zhen; Fang, Yi-ming

    2015-02-01

    A Gram-positive bacterium, designated strain XY18(T), was isolated from a cured vanilla bean in Hainan province, China. Cells were rod-shaped, endospore producing, and peritrichous flagella. Strain XY18(T) grew at salinities of 0-8 % (w/v) NaCl (optimally 1-4 %), pH 4.0-8.0 (optimally 5.0-7.0 %) and temperature range 20-45 °C (optimally 28-35 °C). The predominant menaquinone was MK-7. The major cellular fatty acids were anteiso-C15:0, iso-C15:0, anteiso-C17:0, and iso-C17:0. Phylogenetic analysis based on 16S rRNA gene sequence indicated that strain XY18(T) was a member of the genus Bacillus, and closely related to B. amyloliquefaciens NBRC 15535(T) and B. siamensis PD-A10(T), with 99.1 and 99.2 % sequence similarity, respectively. However, the DNA-DNA hybridization value between strain XY18(T) and B. amyloliquefaciens NBRC 15535(T) was 35.7 %. The genomic DNA G+C content of strain XY18(T) was 46.4 mol%, significantly differed from B. siamensis PD-A10(T) (41.4 %), which was higher than the range of 4 % indicative of species. On the basis of polyphasic taxonomic study, including phenotypic features, chemotaxonomy, and phylogenetic analyses, strain XY18(T) represents a novel species within the genus Bacillus, for which the name Bacillus vanillea sp. nov. is proposed. The type strain is XY18(T) (=CGMCC 8629 = NCCB 100507).

  19. Bacillus vanillea sp. nov., Isolated from the Cured Vanilla Bean.

    Science.gov (United States)

    Chen, Yong-gan; Gu, Feng-lin; Li, Ji-hua; Xu, Fei; He, Shu-zhen; Fang, Yi-ming

    2015-02-01

    A Gram-positive bacterium, designated strain XY18(T), was isolated from a cured vanilla bean in Hainan province, China. Cells were rod-shaped, endospore producing, and peritrichous flagella. Strain XY18(T) grew at salinities of 0-8 % (w/v) NaCl (optimally 1-4 %), pH 4.0-8.0 (optimally 5.0-7.0 %) and temperature range 20-45 °C (optimally 28-35 °C). The predominant menaquinone was MK-7. The major cellular fatty acids were anteiso-C15:0, iso-C15:0, anteiso-C17:0, and iso-C17:0. Phylogenetic analysis based on 16S rRNA gene sequence indicated that strain XY18(T) was a member of the genus Bacillus, and closely related to B. amyloliquefaciens NBRC 15535(T) and B. siamensis PD-A10(T), with 99.1 and 99.2 % sequence similarity, respectively. However, the DNA-DNA hybridization value between strain XY18(T) and B. amyloliquefaciens NBRC 15535(T) was 35.7 %. The genomic DNA G+C content of strain XY18(T) was 46.4 mol%, significantly differed from B. siamensis PD-A10(T) (41.4 %), which was higher than the range of 4 % indicative of species. On the basis of polyphasic taxonomic study, including phenotypic features, chemotaxonomy, and phylogenetic analyses, strain XY18(T) represents a novel species within the genus Bacillus, for which the name Bacillus vanillea sp. nov. is proposed. The type strain is XY18(T) (=CGMCC 8629 = NCCB 100507). PMID:25292250

  20. Terpenoid variations within and among half-sibling avocado trees, Persea americana Mill. (Lauraceae).

    Science.gov (United States)

    Niogret, Jerome; Epsky, Nancy D; Schnell, Raymond J; Boza, Edward J; Kendra, Paul E; Heath, Robert R

    2013-01-01

    Chemical analyses were conducted to determine the qualitative and quantitative differences in monoterpenes and sesquiterpenes in plant material from avocado trees, Persea americana Mill. (Lauraceae). The initial study analyzed plant material sampled from the trunk to the leaves through different branch diameters to quantify proximo-distal spatial differences within a tree. All trees were seedlings initiated from a single maternal tree. Two-way analysis of variance was conducted on 34 chemicals that comprised at least 3% of the total chemical content of at least one tree and/or location within a tree. There were significant interactions between genotype and location sampled for most chemicals. Parentage analysis using microsatellite molecular markers (SSR's) determined that the four trees had three fathers and that they represented two full-siblings and two half-sibling trees. Descriptive discriminant analysis found that both genotype and location within a tree could be separated based on chemical content, and that the chemical content from full-siblings tended to be more similar than chemical content from half-siblings. To further explore the relationship between genetic background and chemical content, samples were analyzed from leaf material from 20 trees that included two sets of full-sibling seedling trees, the maternal tree and the surviving paternal tree. Descriptive discriminant analysis found good separation between the two full-sibling groups, and that the separation was associated with chemistry of the parental trees. Six groups of chemicals were identified that explained the variation among the trees. We discuss the results in relation to the discrimination process used by wood-boring insects for site-selection on host trees, for tree selection among potential host trees, and the potential use of terpenoid chemical content in chemotaxonomy of avocado trees.

  1. Croton grewioides Baill. (Euphorbiaceae) Shows Antidiarrheal Activity in Mice

    Science.gov (United States)

    da Silva, Anne Dayse Soares; de Melo e Silva, Karoline; Neto, José Clementino; Costa, Vicente Carlos de Oliveira; Pessôa, Hilzeth de Luna F.; Tavares, Josean Fechine; da Silva, Marcelo Sobral; Cavalcante, Fabiana de Andrade

    2016-01-01

    Based on chemotaxonomy, we decided to investigate the possible antidiarrheal activity in mice of a crude ethanolic extract obtained from aerial parts of Croton grewioides (CG-EtOH). We tested for any possible toxicity in rat erythrocytes and acute toxicity in mice. Antidiarrheal activity was assessed by determining the effect of CG-EtOH on defecation frequency, liquid stool, intestinal motility and intestinal fluid accumulation. CG-EtOH showed no in vitro cytotoxicity and was not orally lethal. In contrast, the extract given intraperitoneally (at 2000 mg/kg) was lethal, but only in females. CG-EtOH produced a significant and equipotent antidiarrheal activity, both in defecation frequency (ED50 = 106.0 ± 8.1 mg/kg) and liquid stools (ED50 = 105.0 ± 9.2 mg/kg). However, CG-EtOH (125 mg/kg) decreased intestinal motility by only 22.7% ± 4.4%. Moreover, extract markedly inhibited the castor oil-induced intestinal contents (ED50 = 34.6 ± 5.4 mg/kg). We thus conclude that CG-EtOH is not orally lethal and contains active principles with antidiarrheal activity, and this effect seems to involve mostly changes in intestinal secretion. SUMMARY CG-EtOH showed no in vitro cytotoxicity and was not orally lethal. In contrast, the extract given intraperitoneally (at 2000 mg/kg) was lethal, but only in females.CG-EtOH probably contains active metabolites with antidiarrheal activity.CG-EtOH reduced the frequency and number of liquid stools.Metabolites presents in the CG-EtOH act mainly by reducing intestinal fluid and, to a lesser extent, reducing intestinal motility. Abbreviations Used: CG-EtOH: crude ethanolic extract obtained from the aerial parts of C. grewioides; WHO: World Health Organization; ED50: dose of a drug that produces 50% of its maximum effect; Emax: maximum effect PMID:27365990

  2. Lipid Composition, Fatty Acids and Sterols in the Seaweeds Ulva armoricana, and Solieria chordalis from Brittany (France): An Analysis from Nutritional, Chemotaxonomic, and Antiproliferative Activity Perspectives.

    Science.gov (United States)

    Kendel, Melha; Wielgosz-Collin, Gaëtane; Bertrand, Samuel; Roussakis, Christos; Bourgougnon, Nathalie; Bedoux, Gilles

    2015-09-02

    Lipids from the proliferative macroalgae Ulva armoricana (Chlorophyta) and Solieria chordalis (Rhodophyta) from Brittany, France, were investigated. The total content of lipids was 2.6% and 3.0% dry weight for U. armoricana and S. chordalis, respectively. The main fractions of S. chordalis were neutral lipids (37%) and glycolipids (38%), whereas U. armoricana contained mostly neutral lipids (55%). Polyunsaturated fatty acids (PUFA) represented 29% and 15% of the total lipids in U. armoricana and S. chordalis, respectively. In both studied algae, the phospholipids were composed of PUFA for 18%. In addition, PUFA were shown to represent 9% and 4.5% of glycolipids in U. armoricana and S. chordalis, respectively. The essential PUFA were 16:4n-3, 18:4n-3, 18:2n-3, 18:2n-6, and 22:6n-3 in U. armoricana, and 20:4n-6 and 20:5n-3 in S. chordalis. It is important to notice that six 2-hydroxy-, three 3-hydroxy-, and two monounsaturated hydroxy fatty acids were also identified and may provide a chemotaxonomic basis for algae. These seaweeds contained interesting compounds such as squalene, α-tocopherol, cholest-4-en-3-one and phytosterols. The antiproliferative effect was evaluated in vitro on human non-small-cell bronchopulmonary carcinoma line (NSCLC-N6) with an IC50 of 23 μg/mL for monogalactosyldiacylglycerols isolated from S. chordalis and 24 μg/mL for digalactosyldiacylglycerols from U. armoricana. These results confirm the potentialities of valorization of these two species in the fields of health, nutrition and chemotaxonomy.

  3. A-ring Formylated Flavonoids and Oxoaporphinoid Alkaloid from Dasymaschalon rostratum Merr. et Chun%喙果皂帽花中的A环具醛基黄酮类成分和氧化阿朴啡类生物碱

    Institute of Scientific and Technical Information of China (English)

    周立东; 余竞光; 郭伽; 杨世林

    2001-01-01

    目的:分离鉴定喙果皂帽花茎枝的化学成分。方法:硅胶和聚酰胺柱色谱分离,葡聚糖柱色谱纯化,核磁、质谱、紫外、红外光谱及理化常数鉴定结构。结果:分离鉴定了3个A环具醛基黄酮类化合物lawinal,unonal,isounonal和1个氧化阿朴啡类生物碱7-oxodehydroasimilobine。结论:均为首次从该属中得到,其中A环具醛基黄酮类化合物为首次从番荔枝科中非假鹰爪属中得到,且结构类同,说明两属有密切的亲缘关系。%Objective:To study the chemical components in the stem of Dasymaschalon rostratum.Method:The components were extracted with solvent, separated and purified with chromatographic methods, identified by NMR, MS, UV, IR and physicol-chemical constants.Result:Three A-ring-formylated flavonoids and one oxoaporphinnoid aikaloid were isolated and identified as lawinal, unonal, isounonal and 7-oxodehydroasimilobine.Conclusion:All the four compounds were isolated for the first time from the genus Dasymaschalon.According to all the phytochemistry papers on Annonaceae, A-ring formylated flavonoids in this family were isolated from the genus Desmos for the first time. Thus, it is an interesting discovery in chemotaxonomy which reveals the close relationship between the two genera Desmos and Dasymaschalon.

  4. Terpenoid variations within and among half-sibling avocado trees, Persea americana Mill. (Lauraceae.

    Directory of Open Access Journals (Sweden)

    Jerome Niogret

    Full Text Available Chemical analyses were conducted to determine the qualitative and quantitative differences in monoterpenes and sesquiterpenes in plant material from avocado trees, Persea americana Mill. (Lauraceae. The initial study analyzed plant material sampled from the trunk to the leaves through different branch diameters to quantify proximo-distal spatial differences within a tree. All trees were seedlings initiated from a single maternal tree. Two-way analysis of variance was conducted on 34 chemicals that comprised at least 3% of the total chemical content of at least one tree and/or location within a tree. There were significant interactions between genotype and location sampled for most chemicals. Parentage analysis using microsatellite molecular markers (SSR's determined that the four trees had three fathers and that they represented two full-siblings and two half-sibling trees. Descriptive discriminant analysis found that both genotype and location within a tree could be separated based on chemical content, and that the chemical content from full-siblings tended to be more similar than chemical content from half-siblings. To further explore the relationship between genetic background and chemical content, samples were analyzed from leaf material from 20 trees that included two sets of full-sibling seedling trees, the maternal tree and the surviving paternal tree. Descriptive discriminant analysis found good separation between the two full-sibling groups, and that the separation was associated with chemistry of the parental trees. Six groups of chemicals were identified that explained the variation among the trees. We discuss the results in relation to the discrimination process used by wood-boring insects for site-selection on host trees, for tree selection among potential host trees, and the potential use of terpenoid chemical content in chemotaxonomy of avocado trees.

  5. Classification of marine diatoms using pigment ratio suites

    Institute of Scientific and Technical Information of China (English)

    YAO Peng; YU Zhigang; DENG Chunmei; LIU Shuxia; ZHEN Yu

    2011-01-01

    Diatoms are widely distributed in many temperate areas and some species frequently form extensive blooms in spring.Hence,monitoring the variations of specific genera or species of diatoms is necessary for studying phytoplankton population dynamics in marine ecosystems.To test whether pigment ratios can be used to identify diatoms at a below-class taxonomic level,we analyzed 14 species/strains of diatoms isolated from Chinese seas using high performance liquid chromatography (HPLC).We normalized all pigment concentrations to total chlorophyll a to calculate the ratios of pigment to chlorophyll a,and calculated the ratios between accessory pigments (or pigment sums).Cluster analysis indicated that these diatoms could be classified into four clusters in terms of three accessory pigment ratios:chlorophyll c2:chlorophyll c1,fucoxanthin:total chlorophyll c and diadinoxanthin:diatoxanthin.The classification results matched well with those of biological taxonomy.To test the stability of the classification,pigment data from one species,cultured under different light intensities,and five new species/strains were calculated and used for discriminant analysis.The results show that the classification of diatom species using pigment ratio suites was stable for the variations of pigment ratios of species cultured in different light intensities.The introduction of new species,however,may confuse the classification within the current scheme.Classification of marine diatoms using pigment ratio suites is potentially valuable for the fine chemotaxonomy of phytoplankton at taxonomic levels below class and would advance studies on phytoplankton population dynamics and marine ecology.

  6. Terpenoid variations within and among half-sibling avocado trees, Persea americana Mill. (Lauraceae).

    Science.gov (United States)

    Niogret, Jerome; Epsky, Nancy D; Schnell, Raymond J; Boza, Edward J; Kendra, Paul E; Heath, Robert R

    2013-01-01

    Chemical analyses were conducted to determine the qualitative and quantitative differences in monoterpenes and sesquiterpenes in plant material from avocado trees, Persea americana Mill. (Lauraceae). The initial study analyzed plant material sampled from the trunk to the leaves through different branch diameters to quantify proximo-distal spatial differences within a tree. All trees were seedlings initiated from a single maternal tree. Two-way analysis of variance was conducted on 34 chemicals that comprised at least 3% of the total chemical content of at least one tree and/or location within a tree. There were significant interactions between genotype and location sampled for most chemicals. Parentage analysis using microsatellite molecular markers (SSR's) determined that the four trees had three fathers and that they represented two full-siblings and two half-sibling trees. Descriptive discriminant analysis found that both genotype and location within a tree could be separated based on chemical content, and that the chemical content from full-siblings tended to be more similar than chemical content from half-siblings. To further explore the relationship between genetic background and chemical content, samples were analyzed from leaf material from 20 trees that included two sets of full-sibling seedling trees, the maternal tree and the surviving paternal tree. Descriptive discriminant analysis found good separation between the two full-sibling groups, and that the separation was associated with chemistry of the parental trees. Six groups of chemicals were identified that explained the variation among the trees. We discuss the results in relation to the discrimination process used by wood-boring insects for site-selection on host trees, for tree selection among potential host trees, and the potential use of terpenoid chemical content in chemotaxonomy of avocado trees. PMID:24039994

  7. 乌头属药物资源的化学和生物学研究进展%Recent advances in the chemical and biological studies of Aconitum pharmaceutical resources

    Institute of Scientific and Technical Information of China (English)

    郝大程; 顾晓洁; 肖培根; 许利嘉; 彭勇

    2013-01-01

    毛莨科乌头属药用植物含有二萜生物碱、多糖、黄酮类等药物活性成份,促进了对其化学分类学、分子分类学和药理学的研究.作为药用植物亲缘学的继续深入研究,本文综述乌头属的植物化学、化学分类、分子生物学和系统发育等方面的近期进展及其与乌头药效和毒性的关联.近年在多种乌头植物中发现了更多二萜生物碱,以C19:Ⅲ,aconitine类型最多.综述了近年发现的乌头生物碱和提取物,以及乌头多糖和其它成分的生物活性.国产乌头亚属中乌头组基于形态学的11系分类未得到化学分类和分子系统发育研究的支持.基于细胞核和叶绿体DNA序列的分子系统树将形态极相近的9系分为两群,一为甘青乌头系,圆叶乌头系,保山乌头系和短柄乌头系;另一为乌头系,兴安乌头系,显柱乌头系,蔓乌头系和准噶尔乌头系,化学分类数据支持此分群.为了乌头资源的可持续利用和发现高效低毒的新化合物,有必要将近年涌现的新技术用于乌头研究.系统生物学和组学技术将在促进乌头生物活性化合物研究中发挥关键作用.%Many herbal medicines have so far been utilized for the treatment of various ailments since the beginning of Chinese civilization.Aconitum is a botanical source for various pharmaceutically active components,which has been commonly used in traditional Chinese medicine for thousands of years.Increasing interest in Aconitum pharmaceutical resources has led to further discoveries of diterpenoid alkaloids,polysaccharides,flavonoids and many other compounds in various Aconitum species,and to investigations on their chemotaxonomy,molecular phylogeny and pharmacology.In continuation with our studies on Aconitum pharmacophylogeny,here we review the phytochemistry,chemotaxonomy,molecular biology and phylogeny of Aconitum and their relevance to therapeutic efficacy and toxicity.An exhaustive literature survey is

  8. KAJIAN TERHADAP PROSPEK PENGEMBANGAN BAHAN BIOAKTIF BUAH MAHKOTA DEWA (P. Macrocarpa SEBAGAI KANDIDAT NEW CHEMICAL ENTITY (NCE UNTUK PENGOBATAN KANKER (SITOSTATIKA

    Directory of Open Access Journals (Sweden)

    Vivi Lisdawati

    2012-11-01

    Full Text Available Abstract. In the last few years there are tendency for cancer study to develop in discovery of new chemical entity (NCE for new drugs. The needed of NCE based on reality that cancer therapy reaches a resistant level very fast. By developing NCE, multiply cancer drugs can be used at one therapy and be implemented as a solution to inhibit a resistant level and very useful in recovery time. Natural products are the most important sources of NCE and could be used from plants, animals or minerals. Most of the natural products used in Indonesia are recognized from plants. Plants secondary metabolites show promise for cancer chemoprevention, which has been defined as the use of non cytotoxic nutrient or pharmacological agents to enhance intrinsic physiological mechanism that protect the organism against mutant clones of malignant cells. The study of plants secondary metabolites is nowadays moved from improvement of the empiric activity to meet the relationship between the structures of chemical compounds to its pharmacology activities. Development of study on plants in Indonesia is also pointed on discovery of NCE for new drugs of cancer and the cellular cytotoxic mechanism of the biological activity. Extracts from the fruit of P. macrocarpa is one of the sources for NCE of cancer drug in Indonesia. Some isolates already isolated from the extracts, i.e. lignan compound Ci9H2o06: 5-[4(4-Methoxy-phenyl-tetrahydrofurof3,4-cJfuran-l-yl]-benzene-1,2,3-triol and benzophenon compound: 4', 6-dihiroksi-4-metoksibenzofenon-2-0-glukoside. Using chemotaxonomy Dahlgren and Conqruist system approached indicate that these compounds have anti proliferation and pro apoptotic as their cytotoxic activities. The pharmacology activities from the fruit extracts also have been studied. For cytotoxic activities, the fruit extracts showed ICSo values from 5 to 7.71. jug/ml for leukemia LI 210 cell line; and IC50 values 196.74 jug/ml for HeLa cell line. The extracts also showed

  9. Potential sources of hydrogel stabilization of Florida Bay lime mud sediments and implications for organic matter preservation

    Science.gov (United States)

    Louda, J.W.; Loitz, J.W.; Melisiotis, A.; Orem, W.H.

    2004-01-01

    The fine grained carbonate mud sediments of central Florida Bay are resuspended quite easily. However, this disturbance is usually limited to the surficial ('floc') layer, as the underlying sediments appear to be stabilized by an hydrogelation involving the bulk organic matter. That gelation has occurred within these sediments is suggested from their physical behavior and an observed mathematical relationship between the percentages of organic carbon (C org) and water. Specifically, when extruded from a core barrel, the sediment maintains its integrity and has the consistency of a fine spackling compound. However, upon homogenization, as with a stirring rod prior to sieving, these sediments break into two distinct phases, 1/2-2/3 milky water and 1/3-1/2 sediment grains, by volume. The relationship observed between Corg and water was modeled as both linear (% water = (0.0777) Corg + 0.2984, R2 = 0.8664) and logarithmic (% water = 0.2489 Ln Corg + 0.2842, R2 = 0.9455) functions. As this relationship tends to be asymptotic at higher Corg (>3.5% dry)/water values (>60%) and given an higher correlation, the relationship appears better modeled as a logarithmic function. Values of C org from 1.2 to over 6.5%dry wt. and water contents from 30 to over 70%wt. were observed. The calculated intercept revealed that, without organic carbon (viz. hydrogel formation), these carbonates would likely contain only ???30% water by weight ('m' from linear model). This gelation is proposed to involve exopolymeric substances (EPS), likely polysaccharides, derived from diatoms and cyanobacteria of the microphytobenthos. A cyanobacterial-diatomaceous biofilm/mat underlain by purple sulfur bacteria was shown, by pigment based chemotaxonomy, to form the main components of the microphytobenthos. Additional water column detrital biomass, also mainly cyanobacteria and diatoms, is admixed with the living microphytobenthos in a flocculent/nephloid layer above the sediments prior to final

  10. The volatile compound BinBase mass spectral database

    Directory of Open Access Journals (Sweden)

    Barupal Dinesh K

    2011-08-01

    ://vocbinbase.fiehnlab.ucdavis.edu. Conclusions The BinBase database algorithms have been successfully modified to allow for tracking and identification of volatile compounds in complex mixtures. The database is capable of annotating large datasets (hundreds to thousands of samples and is well-suited for between-study comparisons such as chemotaxonomy investigations. This novel volatile compound database tool is applicable to research fields spanning chemical ecology to human health. The BinBase source code is freely available at http://binbase.sourceforge.net/ under the LGPL 2.0 license agreement.

  11. Secondary metabolites isolated from Richardia brasiliensis Gomes (Rubiaceae Metabólitos secundários isolados de Richardia brasiliensis Gomes (Rubiaceae

    Directory of Open Access Journals (Sweden)

    Danielle S. Pinto

    2008-09-01

    Full Text Available The family Rubiaceae comprises around 637 genera and approximately 10,700 species, occurring essentially in tropical regions of Brazil. Richardia brasiliensis Gomes, known popularly as "poaia branca", is native to Brazil south region, used in folk medicine as anti-emetic and in the treatment of diabetes. This work reports the isolation and structural identification of a flavonoid glycoside, a triterpene, a coumarin and two benzoic acid derivatives, aiming at contributing to the chemotaxonomy of the genus Richardia, through a phytochemical study of Richardia brasiliensis. By means of this study the metabolites isorhamnetin-3-O-rutinoside, oleanolic acid, the coumarin scopoletin and p-hydroxy-benzoic and m-methoxy-p-hydroxy-benzoic acids were isolated and identified. All of them, but the latter, were isolated for the first time in the genus, thereby presenting relevant chemotaxonomic importance to it. The structures were identified using spectroscopic techniques such as IR, one and two-dimensional ¹H and 13C NMR besides comparison with literature data.A família Rubiaceae compreende cerca de 637 gêneros e aproximadamente 10700 espécies, ocorrendo essencialmente nas regiões tropicais do Brasil. Richardia brasiliensis Gomes, popularmente conhecida por "poaia branca", é uma planta nativa da região sul do Brasil, utilizada na medicina popular como anti-emética e no tratamento de diabetes. Este trabalho reporta o isolamento e identificação estrutural de um flavonóide glicosilado, um triterpeno, uma cumarina e dois derivados de ácido benzóico, objetivando contribuir para quimiotaxonomia do gênero Richardia. Através deste estudo foi possível isolar e identificar os metabólitos isorametina-3-O-rutinosídeo, ácido oleanólico, a cumarina escopoletina e os ácidos p-hidroxi-benzóico e m-metoxi-p-hidroxi-benzóico, todos isolados pela primeira vez no gênero, exceto o último, apresentando, portanto, relevante importância quimiotaxon

  12. A survey of the summer coccolithophore community in the western Barents Sea

    Science.gov (United States)

    Giraudeau, Jacques; Hulot, Vivien; Hanquiez, Vincent; Devaux, Ludovic; Howa, Hélène; Garlan, Thierry

    2016-06-01

    The Barents Sea is particularly vulnerable to large-scale hydro-climatic changes associated with the polar amplification of climate change. Key oceanographical variables in this region are the seasonal development of sea-ice and the location and strength of physico-chemical gradients in the surface and subsurface water layers induced by the convergence of Arctic- and Atlantic-derived water masses. Remote sensing imagery have highlighted the increasing success of calcifying haptophytes (coccolithophores) in the summer phytoplankton production of the Barents Sea over the last 20 years, as a response to an overall larger contribution of Atlantic waters to surface and sub-surface waters, as well as to enhanced sea-ice melt-induced summer stratification of the photic layer. The present study provides a first thorough description of coccolithophore standing stocks and diversity over the shelf and slope of the western Barents Sea from two sets of surface and water column samples collected during August-September 2014 from northern Norway to southern Svalbard. The abundance and composition of coccolithophore cells and skeletal remains (coccoliths) are discussed in view of the physical-chemical-biological status of the surface waters and water column based on in-situ (temperature, salinity, fluorescence) and shore-based (microscope enumerations, chemotaxonomy) measurements, as well as satellite-derived data (Chl a and particulate inorganic carbon contents). The coccolithophore population is characterized by a low species diversity and the overwhelming dominance of Emiliania huxleyi. Coccolithophores are abundant both within the well stratified, Norwegian coastal water - influenced shallow mixed layer off northern Norway, as well as within well-mixed cool Atlantic water in close vicinity of the Polar Front. Bloom concentrations with standing stocks larger than 4 million cells/l are recorded in the latter area north of 75°N. Our limited set of chemotaxonomic data suggests

  13. Seasonality, phytoplankton succession and the biogeochemical impacts of an autumn storm in the northeast Atlantic Ocean

    Science.gov (United States)

    Painter, Stuart C.; Finlay, Madelaine; Hemsley, Victoria S.; Martin, Adrian P.

    2016-03-01

    Phytoplankton chemotaxonomic distributions are examined in conjunction with taxon specific particulate biomass concentrations and phytoplankton abundances to investigate the biogeochemical consequences of the passage of an autumn storm in the northeast Atlantic Ocean. Chemotaxonomy indicated that the phytoplankton community was dominated by nanoplankton (2-20 μm), which on average represented 75 ± 8% of the community. Microplankton (20-200 μm) and picoplankton (chlorophyll-a (TCHLa = CHLa + Divinyl CHLa) concentrations ranged from 22 to 677 ng L-1, with DvCHLa making minor contributions of between <1% and 13% to TCHLa. Higher DvCHLa contributions were seen during the storm, which deepened the surface mixed layer, increased mixed layer nutrient concentrations and vertically mixed the phytoplankton community leading to a post-storm increase in surface chlorophyll concentrations. Picoplankton were rapid initial respondents to the changing conditions with pigment markers showing an abrupt 4-fold increase in proportion but this increase was not sustained post-storm. 19‧-HEX, a chemotaxonomic marker for prymnesiophytes, was the dominant accessory pigment pre- and post-storm with concentrations of 48-435 ng L-1, and represented 44% of total carotenoid concentrations. Accompanying scanning electron microscopy results support the pigment-based analysis but also provide detailed insight into the nano- and microplankton communities, which proved to be highly variable between pre-storm and post-storm sampling periods. Nanoplankton remained the dominant size class pre- and post-storm but the microplankton proportion peaked during the period of maximum nutrient and chlorophyll concentrations. Classic descriptions of autumn blooms resulting from storm driven eutrophication events promoting phytoplankton growth in surface waters should be tempered with greater understanding of the role of storm driven vertical reorganization of the water column and of resident phytoplankton

  14. Identification of potentially safe promising fungal cell factories for the production of polyketide natural food colorants using chemotaxonomic rationale

    Directory of Open Access Journals (Sweden)

    Frisvad Jens C

    2009-04-01

    Full Text Available Abstract Background Colorants derived from natural sources look set to overtake synthetic colorants in market value as manufacturers continue to meet the rising demand for clean label ingredients – particularly in food applications. Many ascomycetous fungi naturally synthesize and secrete pigments and thus provide readily available additional and/or alternative sources of natural colorants that are independent of agro-climatic conditions. With an appropriately selected fungus; using in particular chemotaxonomy as a guide, the fungal natural colorants could be produced in high yields by using the optimized cultivation technology. This approach could secure efficient production of pigments avoiding use of genetic manipulation. Results Polyketide pigment producing ascomycetous fungi were evaluated for their potential as production organisms based on a priori knowledge on species-specific pigment and potential mycotoxin production and BioSafety level (BSL classification. Based on taxonomic knowledge, we pre-selected ascomycetous fungi belonging to Penicillium subgenus Biverticillium that produced yellow, orange or red pigments while deselecting Penicillium marneffei; a well known human pathogen in addition to other mycotoxigenic fungi belonging to the same group. We identified 10 strains belonging to 4 species; viz. P. purpurogenum, P. aculeatum, P. funiculosum, and P. pinophilum as potential pigment producers that produced Monascus-like pigments but no known mycotoxins. The selection/deselection protocol was illustrated in the pigment extracts of P. aculeatum IBT 14259 and P. crateriforme IBT 5015 analysed by HPLC-DAD-MS. In addition, extracellular pigment producing ability of some of the potential pigment producers was evaluated in liquid media with a solid support and N-glutarylmonascorubramine was discovered in the partially purified pigment extract of P. purpurogenum IBT 11181 and IBT 3645. Conclusion The present work brought out that the use

  15. Molecular fossils of diatoms. Applications in petroleum geochemistry and palaeoenvironmental studies

    Energy Technology Data Exchange (ETDEWEB)

    Rampen, S.W.

    2009-06-11

    Diatoms are one of the major groups of algae which originated relatively recently and evolved in the Late Jurassic/Cretaceous. This thesis presents the results of a comprehensive study of diatom lipids in cultures and in the environment and their applications in the age determination of petroleum and in palaeoenvironmental studies. Diatom DNA sequences were analyzed in order to relate the phylogenetic positions of diatoms to the lipid chemotaxonomy. Forty four different sterols were identified in diatoms, with 24-methylcholesta-5,24(28)-dien-3-beta-ol being most common. 24-Methylcholesta-5,22E-dien-3-beta-ol, previously described as a diatom biomarker, was only the fifth most common sterol and absent in some major diatom groups. All identified sterols have been reported in other algae, but within the diatoms, some sterols and sterol compositions seem to be specific for specific phylogenetic clusters. Sterol compositions confirmed the separate phylogenetic position of the genus Attheya, as also indicated by molecular phylogeny and microscopy. 23-Methyl and 23,24-dimethyl sterols, often associated with dinoflagellate algae, were present in a substantial number of diatoms, suggesting that diatoms may also be a major source. Their phylogenetic position suggests that these diatoms originated from a single common ancestor which evolved in the late Jurassic. In addition to 23-methyl and 23,24-dimethyl sterols, the unusual sterol gorgosterol was found in two diatom cultures of the genus Delphineis. 24-Norsterols were found in the diatom species Thalassiosira aff. antarctica and in dinoflagellate cultures. The evolutionary history of dinoflagellates and diatoms explains the stepwise increases of 24-norsterane concentrations, diagenetic products of 24-norsterols, in petroleum. Long-chain 1,14-diols and 12-hydroxy methyl alkanoates were detected in Proboscia diatoms and may be used as indicators for high-nutrient conditions and upwelling. Their distributions varied between