WorldWideScience

Sample records for chemotaxonomy

  1. Chemotaxonomy of the genus Stemphylium

    DEFF Research Database (Denmark)

    Olsen, Kresten Jon Kromphardt; Andersen, Birgitte

    The filamentous fungal genus Stemphylium (Anamophic Pleospora) is often found on various crops, and especially the common animal feed plant Medicago sativa (alfalfa) is often infected by this plant pathogen. With this in mind it is important to consider what consequences such a contamination can...... have, e.g. production of mycotoxins. (Firsvad et al. (2009)) A clade of Stemphylium spp. i.e. S. herbarum, S. alfalfae, S. sedicola, S. tomatonis and S. vesicariumare troublesome to distinguish as they share both morphological and molecular characteristics. This study has focused on using chemotaxonomy...

  2. Cuticular Hydrocarbons of Orchid Bees Males: Interspecific and Chemotaxonomy Variation

    Science.gov (United States)

    dos Santos, Aline Borba; do Nascimento, Fábio Santos

    2015-01-01

    Recent studies have investigated the composition of compounds that cover the cuticle in social insects, but few studies have focused on solitary bees. Cuticular hydrocarbons may provide a tool for chemotaxonomy, and perhaps they can be used as a complement to morphology and genetic characters in phylogenetic studies. Orchid bees (Tribe Euglossini) are a highly diverse group of Neotropical bees with more than 200 species. Here, the cuticular hydrocarbons of 17 species were identified and statistical analysis revealed 108 compounds, which allowed for the taxonomic classification according to the genera. The most significant compounds discriminating the four genera were (Z)-9-pentacosene, (Z,Z)-pentatriacontene-3, (Z)-9-tricosene, and (Z)-9-heptacosene. The analyses demonstrated the potential use of CHCs to identify different species. PMID:26713612

  3. The use of secondary metabolite profiling in chemotaxonomy of filamentous fungi

    DEFF Research Database (Denmark)

    Frisvad, Jens Christian; Andersen, Birgitte; Thrane, Ulf

    2008-01-01

    A secondary metabolite is a chemical compound produced by a limited number of fungal species in a genus, an order, or even phylum. A profile of secondary metabolites consists of all the different compounds a fungus can produce on a given substratum and includes toxins, antibiotics and other outward......-directed compounds. Chemotaxonomy is traditionally restricted to comprise fatty acids, proteins, carbohydrates, or secondary metabolites, but has sometimes been defined so broadly that it also includes DNA sequences. It is not yet possible to use secondary metabolites in phylogeny, because of the inconsistent...... have been analysed for a wide array of terpenes, polyketides, non-ribosomal peptides, and combinations of these. Fungal chemotaxonomy based on secondary metabolites has been used successfully in large ascomycete genera such as Alternaria, Aspergillus, Fusarium, Hypoxylon, Penicillium, Stachybotrys...

  4. Chemotaxonomy and pharmacology of Gentianaceae

    DEFF Research Database (Denmark)

    Jensen, Søren Rosendal; Schripsema, Jan

    2002-01-01

    The occurrence of taxonomically informative types of compounds in the family Gentianaceae, namely iridoids, xanthones, mangiferin, and Cglucoflavones, has been recorded. The properties, biosynthesis, and distribution of each group of compounds are described. The iridoids (mainly secoiridoid...... from 121 species in 21 genera. A coherent theory for the biosynthesis of xanthones, based partly on published biosynthetic results and partly on biosynthetic reasoning, is postulated and used to group the compounds into biosynthetic categories. Arranging the genera according to the xanthones present...... Chironieae. Mangiferin, a Cglucoxanthone with a biosynthesis different from the above xanthones, has been recorded from 42 species in seven genera. Of these, five belong to the Gentianeae and two to the Chironieae. The C-glucoflavones have been recorded from 78 species in nine genera. Three of these belong...

  5. Chemotaxonomy and evolution of Plantago L

    DEFF Research Database (Denmark)

    Rønsted, Nina; Franzyk, Henrik; Mølgaard, Per;

    2003-01-01

    In continuation of our investigations of the genus Plantago L. (Plantaginaceae), sixteen species were investigated with respect to watersoluble glycosides. The iridoids auroside, strictoloside and globularicisin, as well as poliumoside, 3-[(4-beta-D-glucopyranosyloxy)phenyl]propionic acid and 2-[...... deoxygeniposidic acid were incorporated into aucubin and geniposidic acid in Plantago ovata, consistent with earlier findings, but no incorporation into asperuloside was observed. The evolution of biosynthetic pathways in Plantago is discussed.......In continuation of our investigations of the genus Plantago L. (Plantaginaceae), sixteen species were investigated with respect to watersoluble glycosides. The iridoids auroside, strictoloside and globularicisin, as well as poliumoside, 3-[(4-beta-D-glucopyranosyloxy)phenyl]propionic acid and 2......-[4-(beta-D-glucopyranosyloxy)phenyl]acetic acid were isolated from Plantago for the first time. The latter compound has not previously been isolated as a natural product. Sorbitol was the main carbohydrate in all the species investigated. The distribution of iridoids correlates well with the morphological...

  6. Chemotaxonomy of the genus Nuxia (Buddlejaceae)

    DEFF Research Database (Denmark)

    Jensen, Søren Rosendal

    An investigation of two species of Nuxia (Buddlejaceae) showed that this genus is characterised by the presence of the eight-carbon iridoid glucoside unedoside and/or its derivatives. From N. floribunda was isolated unedoside, nuxioside (6-O-a-L-rhamnopyranosyl-unedoside) and 2''-acetyl-3...

  7. Chemotaxonomy of the genus Nuxia (Buddlejaceae)

    DEFF Research Database (Denmark)

    Jensen, Søren Rosendal

    1999-01-01

    ''-cinnamoyl-nuxioside, while from N. oppositifolia was obtained 2''-acetyl-3''-benzoyl-nuxioside. Verbascoside was isolated from both plants. The biosynthesis of unedoside in N. floribunda was investigated and deoxyloganic acid was shown to be a precursor. The taxonomic position of Nuxia and Buddlejaceae is...

  8. Note on the chemotaxonomy of Huaceae

    NARCIS (Netherlands)

    Beijersbergen, A.

    1972-01-01

    A comparative study of acetone, ethanol, and hydrolysis extracts of Hua gahonii Pierre ( Bos 6677, leaves) and Afrostyrax lepidophyllus Mildbr. (Brookman Amissah s.n., bark) has been carried out. The presence of the following compounds could not be demonstrated: gallic acid, ellagic acid, leucoantho

  9. Chemotaxonomy and evolution of Plantago L

    DEFF Research Database (Denmark)

    Rønsted, Nina; Franzyk, Henrik; Mølgaard, Per; Jaroszewski, Jerzy W.; Jensen, Søren Rosendal

    In continuation of our investigations of the genus Plantago L. (Plantaginaceae), sixteen species were investigated with respect to watersoluble glycosides. The iridoids auroside, strictoloside and globularicisin, as well as poliumoside, 3-[(4-beta-D-glucopyranosyloxy)phenyl]propionic acid and 2-[...... deoxygeniposidic acid were incorporated into aucubin and geniposidic acid in Plantago ovata, consistent with earlier findings, but no incorporation into asperuloside was observed. The evolution of biosynthetic pathways in Plantago is discussed.......In continuation of our investigations of the genus Plantago L. (Plantaginaceae), sixteen species were investigated with respect to watersoluble glycosides. The iridoids auroside, strictoloside and globularicisin, as well as poliumoside, 3-[(4-beta-D-glucopyranosyloxy)phenyl]propionic acid and 2......-[4-(beta-D-glucopyranosyloxy)phenyl]acetic acid were isolated from Plantago for the first time. The latter compound has not previously been isolated as a natural product. Sorbitol was the main carbohydrate in all the species investigated. The distribution of iridoids correlates well with the morphological...

  10. Chemotaxonomy of Veroniceae and its allies in the Plantaginaceae

    DEFF Research Database (Denmark)

    Taskova, Rilka Mladenova; Gotfredsen, Charlotte Held; Jensen, Søren Rosendal

    2006-01-01

    In a chemosystematic investigation of tribe Veroniceae (Plantaginaceae), representatives of Camptoloma, Sibthorpia, Veronica subg. Pentasepalae and subg. Hebe, Veronicastrum, Wulfenia, and the related Ellisiophyllum and Globularia were examined for non-flavonoid glycosides. From the 14 species...... studied, 28 different iridoid glucosides and ten caffeoyl phenylethanoid glucosides (CPGs), as well as salidroside and arbutin were isolated and characterized by NMR; of these, five compounds were previously unknown. It was found that the representatives of Veroniceae, as well as Globularia, were......-O-rhamnopyranosylcatalpol; a CPG, hebeoside (2'-b-xylopyranosyl-verbascoside) was isolated from V. (Hebe) salicifolia. The two species of Veronicastrum also contained 6-O-rhamnopyranosylcatalpol esters, including the previously unknown 2'',3''- and 3'',4''-dicinnamoyl derivatives and, in contrast to...

  11. Chemotaxonomy of Plantago. Iridoid glucosides and caffeoyl phenylethanoid glycosides

    DEFF Research Database (Denmark)

    Rønsted, N.; Göbel, E.; Franzyk, Henrik;

    2000-01-01

    , caryoptoside and rehmannioside D were isolated from the genus for the first time. The earlier reported occurrence of sorbitol in the family was confirmed, and this compound was shown by NMR spectroscopy to be the main sugar in the three species investigated for this. The combined data show that CPGs are...... present in all species investigated. With regard to the iridoids, the distribution patterns showed a good correlation with the classification of Rahn. Thus, aucubin is typical for the whole genus, while bartsioside and catalpol as well as 5-substituted iridoids are each characteristic for a subgenus in...

  12. Chemotaxonomy of heterocystous cyanobacteria using FAME profiling as species markers.

    Science.gov (United States)

    Shukla, Ekta; Singh, Satya Shila; Singh, Prashant; Mishra, Arun Kumar

    2012-07-01

    The fatty acid methyl ester (FAME) analysis of the 12 heterocystous cyanobacterial strains showed different fatty acid profiling based on the presence/absence and the percentage of 13 different types of fatty acids. The major fatty acids viz. palmitic acid (16:0), hexadecadienoic acid (16:2), stearic acid (18:0), oleic acid (18:1), linoleic (18:2), and linolenic acid (18:3) were present among all the strains except Cylindrospermum musicola where oleic acid (18:1) was absent. All the strains showed high levels of polyunsaturated fatty acid (PUFAs; 41-68.35%) followed by saturated fatty acid (SAFAs; 1.82-40.66%) and monounsaturated fatty acid (0.85-24.98%). Highest percentage of PUFAs and essential fatty acid (linolenic acid; 18:3) was reported in Scytonema bohnerii which can be used as fatty acid supplement in medical and biotechnological purpose. The cluster analysis based on FAME profiling suggests the presence of two distinct clusters with Euclidean distance ranging from 0 to 25. S. bohnerii of cluster I was distantly related to the other strains of cluster II. The genotypes of cluster II were further divided into two subclusters, i.e., IIa with C. musicola showing great divergence with the other genotypes of IIb which was further subdivided into two groups. Subsubcluster IIb(1) was represented by a genotype, Anabaena sp. whereas subsubcluster IIb(2) was distinguished by two groups, i.e., one group having significant similarity among their three genotypes showed distant relation with the other group having closely related six genotypes. To test the validity of the fatty acid profiles as a marker, cluster analysis has also been generated on the basis of morphological attributes. Our results suggest that FAME profiling might be used as species markers in the study of polyphasic approach based taxonomy and phylogenetic relationship. PMID:21761281

  13. Phytochemistry and chemotaxonomy of Sideritis species from the Mediterranean region.

    Science.gov (United States)

    Fraga, Braulio M

    2012-04-01

    The phytochemical content of the Mediterranean species of the Sideritis genus has been reviewed. The components included in this review are monoterpenes, sesquiterpenes, diterpenes, triterpenes, sterols, flavones, coumarins and phenylpropanoids. From the chemotaxonomic point of view, we have divided the species from this region into four groups. The first of this is formed by taxa containing triterpenes, but not diterpenes. A second group is constituted by species having bicyclic diterpenes of the labdane type and not diterpenes. The third group is characterized by its content in tetracyclic diterpenes of the ent-kaurene type. A fourth group is composed of plants with tetracyclic diterpenes of the ent-beyer-15-ene and/or ent-atis-13-ene class. In addition, the relations of these Mediterranean species with those of the Macaronesian region have been examined. PMID:22326508

  14. 3D chemotaxonomy of corals using fatty acid biomarkers: latitude, longitude and depth

    OpenAIRE

    Figueiredo, Cátia Alexandra Alves, 1989-

    2014-01-01

    Tese de mestrado. Biologia (Ecologia Marinha). Universidade de Lisboa, Faculdade de Ciências, 2014 A população mundial de corais tem vindo a diminuir ao longo dos anos, tanto em abundância como em diversidade. Esta diminuição deve-se à sobre-exploração dos recursos marinhos, à poluição, à acidificação dos oceanos e ao aquecimento global (principal responsável pelo processo de lixiviação). Sendo que aqueles organismos possuem grande importância ecológica e económica, o interesse no seu estu...

  15. Chemotaxonomy of Hawaiian Anthurium cultivars based on multivariate analysis of phenolic metabolites

    Science.gov (United States)

    Thirty-six anthurium spathes, sampled from species and commercial cultivars, were extracted and profiled using liquid-chromatography-mass spectrometry (LC-MS). 315 compounds, including anthocyanins, flavonoid glycosides, and flavanols, were detected from these extracts and used in chemotaxonomic ana...

  16. Protein chemotaxonomy. XIII. Amino acid sequence of ferredoxin from Panax ginseng.

    Science.gov (United States)

    Mino, Yoshiki

    2006-08-01

    The complete amino acid sequence of [2Fe-2S] ferredoxin from Panax ginseng (Araliaceae) has been determined by automated Edman degradation of the entire S-carboxymethylcysteinyl protein and of the peptides obtained by enzymatic digestion. This ferredoxin has a unique amino acid sequence, which includes an insertion of Tyr at the 3rd position from the amino-terminus and a deletion of two amino acid residues at the carboxyl terminus. This ferredoxin had 18 differences in its amino acid sequence compared to that of Petroselinum sativum (Umbelliferae). In contrast, 23-33 differences were observed compared to other dicotyledonous plants. This suggests that Panax ginseng is related taxonomically to umbelliferous plants. PMID:16880642

  17. What’s really in our black raspberry products? – chemotaxonomy by anthocyanin

    Science.gov (United States)

    This presentation will focus on the phytochemical portion of our research into breeding commercial black raspberry (Rubus occidentalis L.; blackcap) cultivars with better fruit quality. A North American native, it was traditionally used as a food and a natural colorant, but renewed US consumer inter...

  18. Microscopical, macroscopical and chemical investigations and their uses in chemotaxonomy of Crataegus pontica C. Koch

    Directory of Open Access Journals (Sweden)

    Nasrollah Ghassemi Dehkordi

    2012-06-01

    Full Text Available The Crataegus genus is widely distributed in Iran. This genus belongs to Rosaceae family and has 17 species in Iran one of which is Crataegus pontica C. Koch. In this paper, we analyzed some microscopic and macroscopic characteristics of this plant, then compared them with other features that were presented previously in previous reports. We analyzed all components in C. pontica, using thin layer chromatography method and then specified the type of flavonoids and hydroxycinnamic acid in C. pontica. Hyproside, rutin and chlorogenic acid were the main flavonoids and hydroxycinnamic occurred acid in this plant. Also, we analyzed its flavonoids quantitatively based on Deutsch Pharmacopoeia method according to hyproside content. Because, to determine the chemosystematic relevancies in some species flavonoids are used, so in this paper we compared C. pontica with 3 other species of its genus such as C. monogyna, C. melanocarpa and C. curvisepala that are found in Iran, and also with the medicinal standard species of Crataegus genus which is called C. oxyacantha. Finally we concluded that hyproside, rutin and chlorogenic acid were the main and common structural components in all species of that genus which were mentioned above.

  19. Effect of freshwater influx on phytoplankton in the Mandovi estuary (Goa, India) during monsoon season: Chemotaxonomy

    Digital Repository Service at National Institute of Oceanography (India)

    Parab, S.G.; Matondkar, S.G.P.; Gomes, H.R.; Goes, J.I.

    in the Niskin sampler was carefully drained into acid-washed carboys. Samples were then immediately transported under cold and dark conditions for analysis to the laboratory approximately 10 km away where they were carefully sub-sampled in duplicate... in duplicate in 500 ml plastic bottles. Samples were then carefully fixed with a few drops of Lugol’s iodine, preserved with 3% buffered formaldehyde and then stored under dark and cool conditions until the time of analysis [16]. 2.4. HPLC Pigment Analysis...

  20. Effect of Freshwater Influx on Phytoplankton in the Mandovi Estuary (Goa, India) during Monsoon Season: Chemotaxonomy

    OpenAIRE

    Goes, Joaquim I.; Prabhu Matondkar, S. G.; Sushma G. Parab; Helga do R. Gomes

    2013-01-01

    The Mandovi estuary is a prominent water body that runs along the west coast ofIndia. It forms an estuarine network with the adjacent Zuari estuary, connected via the Cumbharjua canal. The physico-chemical conditions seen in the Mandovi estuary are influenced by two factors: the presence of several other groups of phytoplankton, the presence of which is yet to be reported in many other tropical estuaries. It includes chrysophytes, cyanobacteria, prasinophytes, prymnesiophytes and chlorophyte...

  1. Chemotaxonomy of three genera of the Annonaceae family using self-organizing maps and 13C NMR data of diterpenes

    International Nuclear Information System (INIS)

    The Annonaceae family is distributed throughout Neotropical regions of the world. In Brazil, it covers nearly all natural formations particularly Annona, Xylopia and Polyalthia and is characterized chemically by the production of sources of terpenoids (mainly diterpenes), alkaloids, steroids, polyphenols and, flavonoids. Studies from 13C NMR data of diterpenes related with their botanical occurrence were used to generate self-organizing maps. Results corroborate those in the literature obtained from morphological and molecular data for three genera and the model can be used to project other diterpenes. Therefore, the model produced can predict which genera are likely to contain a compound. (author)

  2. Chemotaxonomy of three genera of the Annonaceae family using self-organizing maps and {sup 13}C NMR data of diterpenes

    Energy Technology Data Exchange (ETDEWEB)

    Scotti, Luciana; Tavares, Josean Fechine; Silva, Marcelo Sobral da [Universidade Federal da Paraiba (UFPB), Joao Pessoa, PB (Brazil). Dept. de Ciencias Farmaceuticas; Falcao, Emanuela Viana; Silva, Luana de Morais e; Soares, Gabriela Cristina da Silva; Scotti, Marcus Tullius, E-mail: mtscotti@ccae.ufpb.br [Universidade Federal da Paraiba (UFPB), Rio Tinto, PB (Brazil). Dept. de Engenharia e Meio Ambiente

    2012-07-01

    The Annonaceae family is distributed throughout Neotropical regions of the world. In Brazil, it covers nearly all natural formations particularly Annona, Xylopia and Polyalthia and is characterized chemically by the production of sources of terpenoids (mainly diterpenes), alkaloids, steroids, polyphenols and, flavonoids. Studies from {sup 13}C NMR data of diterpenes related with their botanical occurrence were used to generate self-organizing maps. Results corroborate those in the literature obtained from morphological and molecular data for three genera and the model can be used to project other diterpenes. Therefore, the model produced can predict which genera are likely to contain a compound. (author)

  3. Quimiotaxonomia da superordem Zingiberiflorae (sensu Dahlgren I: flavonóides como marcadores quimiossistemáticos Chemotaxonomy of superorder Zingiberiflorae [sensu Dahlgren] I: flavonoids

    Directory of Open Access Journals (Sweden)

    Helena Regina Lima Pugialli

    1993-12-01

    Full Text Available A análise das características flavonoídicas da ordem Zingiberales (superordem Zingiberiflorae, Monocotyledonae reforçou a separação das suas famílias em dois grupos: grupo I (Strelitziaceae, Heliconiaceae, Musaceae e Lowiaceae e grupo II (Zingiberaceae, Costaceae, Marantaceae e Cannaceae. Baseado nos dados químicos e morfológicos sugeriu-se um esquema que caracteriza os diferentes estádios de avanço evolutivo dessas famílias.The analysis of flavonoids in the order Zingiberales (superorder Zingiberiflorae, Monocotyledonae reinforced the separation of its families into two groups: group I (Strelitziaceae, Heliconiaceae, Musaceae and Lowiaceae and group II (Zingiberaceae, Costaceae, Marantaceae and Cannaceae. Chemical and morphological data suggested the relative stages of evolutionary advancement of these families.

  4. Using LC and Hierarchical Cluster Analysis as Tools to Distinguish Timbó Collections into Two Deguelia Species: A Contribution to Chemotaxonomy

    Directory of Open Access Journals (Sweden)

    Danielle da Costa

    2016-04-01

    Full Text Available The species Deguelia utilis and Deguelia rufescens var. urucu, popularly known as “timbó,” have been used for many years as rotenone sources in insecticide formulations. In this work, a method was developed and validated using a high-performance liquid chromatography-photodiode array (HPLC-PDA system, and results were analyzed using hierarchical cluster analysis (HCA. By quantifying the major rotenoids of these species, it was possible to establish a linear relation between them. The ratio between the concentrations of rotenone and deguelin for D. utilis is approximately 1:0.8, respectively, while for D. rufescens var. urucu it is 2:1. These results may help to distinguish these species contributing to their taxonomic identification.

  5. (Un)targeted metabolomics in Asteraceae: probing the applicability of essential-oil profiles of senecio L. (Senecioneae) taxa in chemotaxonomy.

    Science.gov (United States)

    Radulović, Niko S; Mladenović, Marko Z; Blagojević, Polina D

    2014-09-01

    The possible applicability of (un)targeted metabolomics (volatile metabolites) for revealing taxonomic/evolutionary relationships among Senecio L. species (Asteraceae; tribe Senecioneae) was explored. Essential-oil compositional data of selected Senecio/Senecioneae/Asteraceae taxa (93 samples in total) were mutually compared by means of multivariate statistical analysis (MVA), i.e., agglomerative hierarchical clustering and principal component analysis. The MVA input data set included the very first compositional data on the essential oil extracted from the aerial parts of S. viscosus L. as well as on four different Serbian populations of S. vernalis Waldst. & Kit. (oils from aerial parts and roots; eight samples in total). This metabolomic screening of Senecio/Senecioneae/Asteraceae species (herein presented results and data from the literature) pointed to short-chain alk-1-enes (e.g., oct-1-ene, non-1-ene, and undec-1-ene), with up to now restricted general occurrence in Plantae, as characteristic chemotaxonomic markers/targets for future metabolomic studies of Senecio/Senecioneae taxa. The MVA additionally showed that the evolution of the terpene metabolism (volatile mono- and sesquiterpenoids) within the Asteraceae tribe Senecioneae was not genera specific. However, the MVA did confirm plant-organ specific production/accumulation of volatiles within S. vernalis and suggested the existence of at least two volatile chemotypes for this species. PMID:25238075

  6. Using LC and Hierarchical Cluster Analysis as Tools to Distinguish Timbó Collections into Two Deguelia Species: A Contribution to Chemotaxonomy.

    Science.gov (United States)

    da Costa, Danielle; E Silva, Consuelo; Pinheiro, Aline; Frommenwiler, Débora; Arruda, Mara; Guilhon, Giselle; Alves, Cláudio; Arruda, Alberto; Da Silva, Milton

    2016-01-01

    The species Deguelia utilis and Deguelia rufescens var. urucu, popularly known as "timbó," have been used for many years as rotenone sources in insecticide formulations. In this work, a method was developed and validated using a high-performance liquid chromatography-photodiode array (HPLC-PDA) system, and results were analyzed using hierarchical cluster analysis (HCA). By quantifying the major rotenoids of these species, it was possible to establish a linear relation between them. The ratio between the concentrations of rotenone and deguelin for D. utilis is approximately 1:0.8, respectively, while for D. rufescens var. urucu it is 2:1. These results may help to distinguish these species contributing to their taxonomic identification. PMID:27144548

  7. Revue bibliographique: les méthodes chimiques d'identification et de classification des champignons

    Directory of Open Access Journals (Sweden)

    Verscheure M.

    2002-01-01

    Full Text Available Chemotaxonomy of fungi : a review. For few years, advancements of molecular methods and analytical techniques enabled scientists to realise a classification of microorganisms based on biochemical characteristics. This classification, called chemotaxonomy, includes molecular methods and chemical methods which provide additional data and lead to a better identification and/or classification.

  8. Revue bibliographique: les méthodes chimiques d'identification et de classification des champignons

    OpenAIRE

    Verscheure M.; Lognay G.; Marlier M.

    2002-01-01

    Chemotaxonomy of fungi : a review. For few years, advancements of molecular methods and analytical techniques enabled scientists to realise a classification of microorganisms based on biochemical characteristics. This classification, called chemotaxonomy, includes molecular methods and chemical methods which provide additional data and lead to a better identification and/or classification.

  9. Importance of Terpenoids and Essential Oils in Chemotaxonomic Approach

    Directory of Open Access Journals (Sweden)

    Vidita V. Bhargava

    2013-06-01

    Full Text Available Chemotaxonomy of plants involves the study of chemical variation in different types of plants and use of this information in classification of plants. Chemotaxonomy consists of the investigation of the distribution of chemical compounds or groups of biosynthetically related compounds in series of related or supposedly related plants. Since ancient times, the essential oil and terpenoids of many aromatic plants have been used as bioactive ingredients in drug, food, perfumery and cosmetic formulations all over the world and so it is worthwhile to study their role in chemotaxonomy. They are distributed in families like Myrtaceae, Lauraceae, Rutaceae, Lamiaceae, Asteraceae, Umbelliferae, Verbenaceae and Piperaceae. To detect even traces of chemical compounds during chemical analysis sophisticated techniques have also been introduced in chemotaxonomy of medicinal plants.

  10. Importance of Terpenoids and Essential Oils in Chemotaxonomic Approach

    OpenAIRE

    Vidita V. Bhargava; Shashank C. Patel; Kruti S. Desai

    2013-01-01

    Chemotaxonomy of plants involves the study of chemical variation in different types of plants and use of this information in classification of plants. Chemotaxonomy consists of the investigation of the distribution of chemical compounds or groups of biosynthetically related compounds in series of related or supposedly related plants. Since ancient times, the essential oil and terpenoids of many aromatic plants have been used as bioactive ingredients in drug, food, perfumery and cosmetic formu...

  11. Characterisation of the chemical profiles of Brazilian and Andean morphotypes belonging to the Anastrepha fraterculus complex (Diptera, Tephritidae)

    Czech Academy of Sciences Publication Activity Database

    Vaníčková, Lucie; Břízová, Radka; Pompeiano, A.; Ferreira, L. L.; De Aquino, N. C.; Tavares, R. F.; Rodriguez, L. D.; Mendonca, A. L.; Canal, N. A.; do Nascimento, R. R.

    -, č. 540 (2015), s. 193-209. ISSN 1313-2989 Institutional support: RVO:61388963 Keywords : cryptic species * chemotaxonomy * GCxGC/MS * PCA Subject RIV: EG - Zoology Impact factor: 0.933, year: 2014 http://zookeys.pensoft.net/articles.php?id=6224

  12. Intraspecific variation of cuticular hydrocarbon profiles in the Anastrepha fraterculus (Diptera: Tephritidae) species complex

    Czech Academy of Sciences Publication Activity Database

    Vaníčková, Lucie; Břízová, Radka; Mendonca, A. L.; Pompeiano, A.; do Nascimento, R. R.

    2015-01-01

    Roč. 139, č. 9 (2015), s. 679-689. ISSN 0931-2048 Institutional support: RVO:61388963 Keywords : chemotaxonomy * GCxGC/TOFMS * multiple factorial analyses * putative species * South American fruit fly Subject RIV: CB - Analytical Chemistry, Separation Impact factor: 1.650, year: 2014

  13. Cuticular hydrocarbons corroborate the distinction between lowland and highland Natal fruit fly (Tephritidae, Ceratitis rosa) populations

    Czech Academy of Sciences Publication Activity Database

    Vaníčková, Lucie; Břízová, Radka; Pompeiano, A.; Ekesi, S.; De Meyer, M.

    -, č. 540 (2015), s. 507-524. ISSN 1313-2989 Institutional support: RVO:61388963 Keywords : Ceratitis rosa * cryptic species * chemotaxonomy * GCxGC/MS * integrative taxonomy Subject RIV: EG - Zoology Impact factor: 0.933, year: 2014 http://zookeys.pensoft.net/articles.php?id=6222

  14. Essential oils in the Ranunculaceae family: Chemical composition of fractions hydrodistilled from Consolida regalis, Delphinium elatum, Nigella hispanica, and N. nigellastrum seeds

    Czech Academy of Sciences Publication Activity Database

    Kokoška, L.; Urbanová, Klára; Klouček, P.; Nedorostová, L.; Polesná, L.; Malík, J.; Jiroš, Pavel; Havlík, J.; Vadlejch, J.; Valterová, Irena

    2012-01-01

    Roč. 9, č. 1 (2012), s. 151-161. ISSN 1612-1872 R&D Projects: GA ČR GA525/08/1179 Institutional research plan: CEZ:AV0Z40550506 Keywords : monoterpenes * pinenes * fatty acids * chemotaxonomy Subject RIV: CC - Organic Chemistry Impact factor: 1.808, year: 2012

  15. Tannin and organic acid content in the leaves of cranberry (genus Vaccinium L., subgenus Oxycoccus (Hill.) A. Gray)

    OpenAIRE

    Jan Sarosiek; Wanda Gugnacka-Fiedor; Zofia Wiewiórka

    2013-01-01

    Quantitative and qualitative analyses of tannins and organic acids in 23 populations were conducted. Studied populations represented following species: Vaccinium macrocarpon Ait., Vaccinium microcarpum (Turcz. ex Rupr.) Schmalh. and Vaccinium oxycoccus L. Significant inter-species differences in tannin and organic acid contents were found. As they were proved to be conditioned ecologically, they could not be used in the chemotaxonomy of cranberries.

  16. Correlations between selected monoterpene hydrocarbons in the xylem of six .I.Pinus./I. (Pinaceae) species

    Czech Academy of Sciences Publication Activity Database

    Fäldt, J.; Sjödin, K.; Persson, M.; Valterová, Irena; Borg-Karlson, A. K.

    2001-01-01

    Roč. 11, - (2001), s. 97-106. ISSN 0937-7409 R&D Projects: GA AV ČR IAA4055001 Institutional research plan: CEZ:AV0Z4055905 Keywords : chemotaxonomy * biosynthesis Subject RIV: CC - Organic Chemistry

  17. Resolution of three cryptic agricultural pests (Ceratitis fasciventris, C. anonae, C. rosa, Diptera: Tephritidae) using cuticular hydrocarbon profiling

    Czech Academy of Sciences Publication Activity Database

    Vaníčková, Lucie; Virgilio, M.; Tomčala, Aleš; Břízová, Radka; Ekesi, S.; Hoskovec, Michal; Kalinová, Blanka; do Nascimento, R. R.; De Meyer, M.

    2014-01-01

    Roč. 104, č. 5 (2014), s. 631-638. ISSN 0007-4853 Institutional support: RVO:61388963 Keywords : cryptic species complex * genus Ceratitis * cuticular hydrocarbons * polymorphic microsatellite loci * chemotaxonomy Subject RIV: CB - Analytical Chemistry, Separation Impact factor: 1.910, year: 2014

  18. Analyses of volatiles produced by the African fruit fly species complex (Diptera, Tephritidae)

    Czech Academy of Sciences Publication Activity Database

    Břízová, Radka; Vaníčková, Lucie; Faťarová, M.; Ekesi, S.; Hoskovec, Michal; Kalinová, Blanka

    -, č. 540 (2015), s. 385-404. ISSN 1313-2989 Institutional support: RVO:61388963 Keywords : Ceratitis FAR complex * chemotaxonomy * male and female-borne volatiles * GCxGC-TOFMS * GC-EAD Subject RIV: EG - Zoology Impact factor: 0.933, year: 2014 http://zookeys.pensoft.net/articles.php?id=6223

  19. Isoprenoid emission in hygrophyte and xerophyte European woody flora: ecological and evolutionary implications

    Czech Academy of Sciences Publication Activity Database

    Loreto, F.; Bagnoli, F.; Calfapietra, Carlo; Cafasso, D.; De Lillis, M.; Filibeck, G.; Finsechi, S.; Guidolotti, G.; Sramko, G.; Tökölyi, J.; Ricotta, C.

    2014-01-01

    Roč. 23, č. 3 (2014), s. 334-345. ISSN 1466-822X Institutional support: RVO:67179843 Keywords : Adaptation * chemo-taxonomy * hygrophytes * isoprene * monoterpenes * phylogenies * salicaceae * xerophytes * water stress Subject RIV: EH - Ecology, Behaviour Impact factor: 6.531, year: 2014

  20. Revue bibliographique: les methodes chimiques d'identification et de classification des champignons.

    OpenAIRE

    Verscheure, M.; Lognay, Georges; Marlier, M.

    2002-01-01

    For few years, advancements of molecular methods and analytical techniques enabled scientists to realise a classification of microorganisms based on biochemical characteristics. This classification, called chemotaxonomy, includes molecular methods and chemical methods which provide additional data and lead to a better identification and/or classification.

  1. Secondary metabolite profiling of Alternaria dauci, A. porri, A. solani, and A. tomatophila

    DEFF Research Database (Denmark)

    Andersen, Birgitte; Dongo, Anita; Pryor, Barry M.

    2008-01-01

    Chemotaxonomy (secondary metabolite profiling) has been shown to be of great value in the classification and differentiation in Ascomycota. However, few studies have investigated the use of metabolite production for classification and identification purposes of plant pathogenic Alternaria species....... The purpose of the present study was to describe the methodology behind metabolite profiling in chemotaxonomy using A. dauci, A. porri, A. solani, and A. tomatophila strains as examples of the group. The results confirmed that A. dauci, A. solani, and A. tomatophila are three distinct species each...... with their own specific metabolite profiles, and that A. solani and A. tomatophila both produce altersolanol A, altertoxin 1, and macrosporin. By using automated chemical image analysis and other multivariate statistic analyses, three sets of species-specific metabolites could be selected, one each for...

  2. Brominated Compounds from Marine Sponges of the Genus Aplysina and a Compilation of Their 13C NMR Spectral Data

    OpenAIRE

    Jose Maria Barbosa-Filho; Celidarque da Silva Dias; Luis Cezar Rodrigues; Narlize Silva Lira; Petronio Filgueiras de Athayde-Filho; Emidio V. L. da Cunha; Josean Fechine Tavares; Ricardo Carneiro Montes; Marcelo Sobral da Silva

    2011-01-01

    Aplysina is the best representative genus of the family Aplysinidae. Halogenated substances are its main class of metabolites. These substances contribute greatly to the chemotaxonomy and characterization of the sponges belonging to this genus. Due to their pharmacological activities, these alkaloids are of special interest. The chemistry of halogenated substances and of the alkaloids has long been extensively studied in terrestrial organisms, while the number of marine organisms studied has ...

  3. Albirhodobacter marinus gen. nov., sp. nov., a member of the family Rhodobacteraceae isolated from sea shore water of Visakhapatnam, India

    Digital Repository Service at National Institute of Oceanography (India)

    Nupur; Bhumika, V.; Srinivas, T.N.R.; AnilKumar, P.

    , chemotaxonomy. Introduction The family Rhodobacteraceae was established by Garrity et al. (2005) within the α-3 Proteobacteria. Rhodobacteraceae is an ecologically, metabolically and phenotypically diverse group, including both chemotrophic...- arranged as chain, Te, arranged as tetrads; sh, short; Nm, non-motile, Mo, motile, Ma, marine; FW, fresh water; Ter, terrestrial; en, environments; hy-s, hypersaline; So, soil; sw, sewage; Ac-s, Activated sludge; Bl-Blood (Specimen); -, negative...

  4. Tannin and organic acid content in the leaves of cranberry (genus Vaccinium L., subgenus Oxycoccus (Hill. A. Gray

    Directory of Open Access Journals (Sweden)

    Jan Sarosiek

    2013-12-01

    Full Text Available Quantitative and qualitative analyses of tannins and organic acids in 23 populations were conducted. Studied populations represented following species: Vaccinium macrocarpon Ait., Vaccinium microcarpum (Turcz. ex Rupr. Schmalh. and Vaccinium oxycoccus L. Significant inter-species differences in tannin and organic acid contents were found. As they were proved to be conditioned ecologically, they could not be used in the chemotaxonomy of cranberries.

  5. Research progress in the phytochemistry and biology of Ilex pharmaceutical resources

    OpenAIRE

    Dacheng Hao; Xiaojie Gu; Peigen Xiao; Zhanguo Liang; Lijia Xu; Yong Peng

    2013-01-01

    Ilex is a botanical source for various health-promoting and pharmaceutically active compounds that have been used in traditional Chinese medicine and food for thousands of years. Increasing interest in Ilex pharmaceutical and food resources has led to additional discoveries of terpenoids, saponins, polyphenols (especially flavonoids), glycosides, and many other compounds in various Ilex species, and to investigation of their chemotaxonomy, molecular phylogeny and pharmacology. In continuation...

  6. Portuguese Thymbra and Thymus species volatiles: chemical composition and biological activities.

    Science.gov (United States)

    Figueiredo, A C; Barroso, J G; Pedro, L G; Salgueiro, L; Miguel, M G; Faleiro, M L

    2008-01-01

    Thymbra capitata and Thymus species are commonly known in Portugal as thyme and they are currently used as culinary herbs, as well as for ornamental, aromatizing and traditional medicinal purposes. The present work reports on the state of the art on the information available on the taxonomy, ethnobotany, cell and molecular biology of the Portuguese representatives of these genera and on the chemotaxonomy and antibacterial, antifungal and antioxidant activities of their essential oils and other volatile-containing extracts. PMID:19075695

  7. Application of Modern Experimental Technique to Solve Morphological Complexity in Plants Taxonomy

    Directory of Open Access Journals (Sweden)

    SURANTO

    2000-07-01

    Full Text Available Modern taxonomy has two approaches, i.e. classical and experimental taxonomy. Classical taxonomy uses morphological characters, while experimental taxonomy uses broader methods including chemistry, physics and mathematics, in the form of laboratory data that are revealed together with the progress of optical technique (microscope, chemistry methods (chromatography, electrophoresis, etc. Modern taxonomy tends to use series of interrelated data. More data used would result in more validity and give better clarification of taxonomic status. A lot of modern taxonomic data such as palynology, cytotaxonomy (cytology, chemical constituent (chemotaxonomy, isozyme and DNA sequencing were used recently.

  8. Chemometric analysis applied in 1H HR-MAS NMR and FT-IR data for chemotaxonomic distinction of intact lichen samples

    International Nuclear Information System (INIS)

    This paper describes the potentiality of chemometric analysis applied in 1H HR-MAS NMR and FT-IR data for lichen chemotaxonomic investigations. Lichens present a difficult morphologic differentiation and the chemical analyses are frequently employed for their taxonomic classification, mainly due to the secondary metabolites to be relatively constant for these organisms. The lichen chemotaxonomic classification is usually carried out by color reactions, chromatography, fluorescence and mass spectrometry analysis, where the identification is obtained by one or more techniques. There are some papers which use the carbohydrate content in chemotaxonomy investigation. However, the majority of these techniques involve laborious and time consuming sample pre-treatment. This work focuses on application of 1H high resolution magic angle spinning - nuclear magnetic resonance (HR-MAS NMR) and Fourier transform infrared (FT-IR) associated with chemometric analysis to intact samples. In comparison to other traditional techniques, 1H HR-MAS NMR and FT-IR allied with chemometrics provided a fast and economic method for lichen chemotaxonomy. Both methods were useful for lichen analysis and permitted the satisfactory distinction among families, genera and species, although better results were achieved for FT-IR data

  9. Structure of late summer phytoplankton community in the Firth of Lorn (Scotland) using microscopy and HPLC-CHEMTAX

    Science.gov (United States)

    Brito, Ana C.; Sá, Carolina; Mendes, Carlos R.; Brand, Tim; Dias, Ana M.; Brotas, Vanda; Davidson, Keith

    2015-12-01

    The Firth of Lorn is at the mouth of one of Scotland's largest fjordic sea lochs, Loch Linnhe. This sea loch, which is fed by a number of other inner lochs, supplies a significant flow of freshwater, which frequently causes the stratification of the water column. To investigate how environmental conditions influence the spatial distribution of phytoplankton in this region water samples were collected for phytoplankton (pigments and microscopy), and other environmental variables including nutrients. Chemotaxonomy was used to estimate the contribution of different taxonomic groups to total chlorophyll a (phytoplankton biomass index). Good agreement was obtained between chemotaxonomy and microscopy data. The highest levels of chlorophyll a (˜2.6 mg m-3) were found in the vicinity of Oban Bay, where cryptophytes, the most abundant group, dinoflagellates and other flagellates thrived in the stratified water column. Centric diatoms, mainly Chaetoceros sp. and Skeletonema costatum, were associated with NH4 and SiO2 concentrations and stratification, while pennate diatoms, mainly Cylindrotheca sp. and Nitzchia sp., were found to be associated with NO3 + NO2 and high surface mixed layer depths. Four diatom groups were identified in accordance to their surface to volume ratios, as well as their affinity to environmental parameters (nutrients) and turbulence. This study used a combination of physico-chemical data, classical microscopy methods (appropriate for large cells > 20 μm) and HPLC-CHEMTAX approaches (for large and small cells) to evaluate the distribution of phytoplankton functional groups in a fjordic coastal area.

  10. Research progress in the phytochemistry and biology of Ilex pharmaceutical resources

    Directory of Open Access Journals (Sweden)

    Dacheng Hao

    2013-02-01

    Full Text Available Ilex is a botanical source for various health-promoting and pharmaceutically active compounds that have been used in traditional Chinese medicine and food for thousands of years. Increasing interest in Ilex pharmaceutical and food resources has led to additional discoveries of terpenoids, saponins, polyphenols (especially flavonoids, glycosides, and many other compounds in various Ilex species, and to investigation of their chemotaxonomy, molecular phylogeny and pharmacology. In continuation of our studies on Ilex pharmacology and phylogeny, we review the phytochemistry, chemotaxonomy, molecular biology and phylogeny of Ilex species and their relevance to health-promotion and therapeutic efficacy. The similarity and dissimilarity between Ilex paraguariensis, the source plant of mate tea, and the source plants of large-leaved Kudingcha (e.g., Ilex kudingcha and Ilex latifolia are discussed. It is essential to utilize emerging technologies in non-Camellia tea studies to promote the sustainable utilization of Ilex resources and the identification and development of novel compounds with potential health and clinical utility. Systems biology and “-omics” technologies will play an increasingly important role in pharmaceutical and food research on the bioactive compounds of Ilex species.

  11. Brominated compounds from marine sponges of the genus Aplysina and a compilation of their 13C NMR spectral data.

    Science.gov (United States)

    Lira, Narlize Silva; Montes, Ricardo Carneiro; Tavares, Josean Fechine; da Silva, Marcelo Sobral; da Cunha, Emidio V L; de Athayde-Filho, Petronio Filgueiras; Rodrigues, Luis Cezar; da Silva Dias, Celidarque; Barbosa-Filho, Jose Maria

    2011-01-01

    Aplysina is the best representative genus of the family Aplysinidae. Halogenated substances are its main class of metabolites. These substances contribute greatly to the chemotaxonomy and characterization of the sponges belonging to this genus. Due to their pharmacological activities, these alkaloids are of special interest. The chemistry of halogenated substances and of the alkaloids has long been extensively studied in terrestrial organisms, while the number of marine organisms studied has just started to increase in the last decades. This review describes 101 halogenated substances from 14 species of Aplysina from different parts of the world. These substances can be divided into the following classes: bromotyramines (A), cavernicolins (B), hydroverongiaquinols (C), bromotyrosineketals (D), bromotyrosine lactone derivatives (E), oxazolidones (F), spiroisoxazolines (G), verongiabenzenoids (H), verongiaquinols (I), and dibromocyclohexadienes (J). A compilation of their (13)C NMR data is also part of the review. For this purpose 138 references were consulted. PMID:22163189

  12. Chemical constituents and bioactivity of Formosan lauraceous plants

    Directory of Open Access Journals (Sweden)

    Hsun-Shuo Chang

    2016-04-01

    Full Text Available Taiwan is rich in lauraceous plants. A review of 197 references based on the chemical analysis and bioactivity of indigenous lauraceous plants carried out by native scientists from 1963 to 2014 has been compiled. About 303 new compounds and thousands of known compounds comprising alkaloids and non-alkaloids with diverse structures have been isolated or identified from indigenous plants belonging to the 11 lauraceous genera. The volatile components, however, have been excluded from this review. This review provides an overview of the past efforts of Taiwan scientists working on secondary metabolites and their bioactivity in native lauraceous plants. The potential of lauraceous plants worthy of further study is also noted. The contents will be helpful for the chemotaxonomy of Lauraceae and be of value for the development of native Formosan lauraceous plants.

  13. Current results on biological activities of lichen secondary metabolites: a review.

    Science.gov (United States)

    Molnár, Katalin; Farkas, Edit

    2010-01-01

    Lichens are symbiotic organisms of fungi and algae or cyanobacteria. Lichen-forming fungi synthesize a great variety of secondary metabolites, many of which are unique. Developments in analytical techniques and experimental methods have resulted in the identification of about 1050 lichen substances (including those found in cultures). In addition to their role in lichen chemotaxonomy and systematics, lichen secondary compounds have several possible biological roles, including photoprotection against intense radiation, as well as allelochemical, antiviral, antitumor, antibacterial, antiherbivore, and antioxidant action. These compounds are also important factors in metal homeostasis and pollution tolerance of lichen thalli. Although our knowledge of the contribution of these extracellular products to the success of the lichen symbiosis has increased significantly in the last decades, their biotic and abiotic roles have not been entirely explored. PMID:20469633

  14. Alkaloids from the Tribe Bocconieae (Papaveraceae: A Chemical and Biological Review

    Directory of Open Access Journals (Sweden)

    Xuelong Yu

    2014-08-01

    Full Text Available The Bocconieae tribe, consisting of only the genera Macleaya and Bocconia, possesses significant economic and medicinal value and plays an important role in health management for people in developing countries. During the past decades, research on metabolites and relative pharmacology, including the isolation and identification of a variety of molecules, has shed light on the tribe. Among those molecules, isoquinoline alkaloids, and their antimicrobial, antifungal, and anti-inflammatory activities are especially noteworthy. This paper presents a comprehensive compilation of current research progress, with emphasis on the alkaloids and their distribution, phytochemical and pharmacological investigation, toxicity and side effects, related chemotaxonomy and future use prospects, and hopefully provides a valuable reference as an effort to promote further exploration and application of this tribe.

  15. Integrated analytical approaches towards toxic algal natural products discovery

    DEFF Research Database (Denmark)

    Larsen, Thomas Ostenfeld; Rasmussen, Silas Anselm; Gedsted Andersen, Mikael;

    Microalgae are known to produce toxins which affect the marine ecosystems. This include compounds active against competitors, grazers and in many cases also fish (1,2). Many strategies can be followed for discovery of novel bioactive secondary metabolites from marine sources. We have previously...... demonstrated that phenotypic based chemotaxonomy can be successfully used as the intial step in selection of talented strains for testing in various bioassays, using multivariate methods for clustering of whole profiles of metabolites. The second and very important step in the discovery process is...... present some of the initial results that we have gained looking into the chemistry of Alexandrium and Prymnesium in the new larger Danish strategic project: “Harmful algal blooms and fish kills”(5)....

  16. Brominated Compounds from Marine Sponges of the Genus Aplysina and a Compilation of Their 13C NMR Spectral Data

    Directory of Open Access Journals (Sweden)

    Jose Maria Barbosa-Filho

    2011-11-01

    Full Text Available Aplysina is the best representative genus of the family Aplysinidae. Halogenated substances are its main class of metabolites. These substances contribute greatly to the chemotaxonomy and characterization of the sponges belonging to this genus. Due to their pharmacological activities, these alkaloids are of special interest. The chemistry of halogenated substances and of the alkaloids has long been extensively studied in terrestrial organisms, while the number of marine organisms studied has just started to increase in the last decades. This review describes 101 halogenated substances from 14 species of Aplysina from different parts of the world. These substances can be divided into the following classes: bromotyramines (A, cavernicolins (B, hydroverongiaquinols (C, bromotyrosineketals (D, bromotyrosine lactone derivatives (E, oxazolidones (F, spiroisoxazolines (G, verongiabenzenoids (H, verongiaquinols (I, and dibromocyclohexadienes (J. A compilation of their 13C NMR data is also part of the review. For this purpose 138 references were consulted.

  17. Molecular composition, chemotaxonomical aspects and botanical origin of Brazilian amber [Composição molecular, aspectos quimiotaxonômicos e origem botânica de âmbares brasileiros

    Directory of Open Access Journals (Sweden)

    Débora A. Azevedo

    2011-06-01

    Full Text Available Amber is a plant fossil resin constituted mainly by diterpenes of several classes, such as abietanes, labdanes, pimaranes and kauranes. The botanical origin of amber is related to angiosperms and gymnosperms, depending on the geological period and where it was produced. The analysis of its chemical composition performed using gas chromatography coupled to mass spectrometry and carbon 13 nuclear magnetic resonance allows the determination of the possible botanical sources, allowing obtaining important information regarding the resinous flora on the geological past of the Earth. Although amber samples are studied primarily by geochemists and paleontologists in the context of paleobotany and paleozoology, the research about its molecular composition is directly related to chemotaxonomy and phytochemistry. The results obtained to Brazilian amber samples until this moment allowed the determination of three possible amber botanical sources in Cretaceous period – Araucariaceae, Podocarpaceae e Cheirolepidiaceae.

  18. Intrageneric differences in the four stereoisomers of stenusine in the rove beetle genus, Stenus (Coleoptera, Staphylinidae).

    Science.gov (United States)

    Lusebrink, Inka; Burkhardt, Dirk; Gedig, Thomas; Dettner, Konrad; Mosandl, Armin; Seifert, Karlheinz

    2007-02-01

    Most species of the rove beetle genus Stenus employ the spreading alkaloid stenusine as an escape mechanism on water surfaces. In the case of danger, they emit stenusine from their pygidial glands, and it propels them over the water very quickly. Stenusine is a chiral molecule with four stereoisomers: (2'R,3R)-, (2'S,3R)-, (2'S,3S)-, and (2'R,3S)-stenusine. The percentile ratio of these four isomers is only known for the most common species of the genus: Stenus comma. With the intention of determining the stereoisomer ratios of five additional species from the two subgenera, Stenus and Hypostenus, we used GC/mass spectrometry measurements with a chiral phase. The results showed that the ratio differs among the genus. These findings can be a basis for chemotaxonomy. It is also possible that the biological function of stenusine, e.g., as antibiotic or fungicide, varies with changing stereoisomer composition. PMID:17066267

  19. Rapid identification of osmolytes in tropical microalgae and cyanobacteria by (1)H HR-MAS NMR spectroscopy.

    Science.gov (United States)

    Zea Obando, Claudia; Linossier, Isabelle; Kervarec, Nelly; Zubia, Mayalen; Turquet, Jean; Faÿ, Fabienne; Rehel, Karine

    2016-06-01

    In this study, we report the chemical characterization of 47 tropical microalgae and cyanobacteria by HR-MAS. The generated data confirm the interest of HR-MAS as a rapid screening technique with the major advantage of its easiness. The sample is used as powder of freeze-dried microalgae without any extraction process before acquisition. The spectral fingerprints of strains are then tested as variables for a chemotaxonomy study to discriminate cyanobacteria and dinoflagellates. The individual factor map generated by PCA analysis succeeds in separating the two groups, essentially thanks to the presence of specific carbohydrates. Furthermore, more resolved signals enable to identify many osmolytes. More precisely the characteristics δ of 2-O-alpha-D-glucosylglycerol (GG) are observed in all 21 h-MAS spectra of tropical cyanobacteria. After specific extraction, complementary analysis by 1D and 2D-NMR spectroscopies validates the identification of this osmolyte. PMID:27130130

  20. Importance of microbial pest control agents and their metabolites In relation to the natural microbiota on strawberry

    DEFF Research Database (Denmark)

    Jensen, Birgit; Knudsen, Inge M. B.; Jensen, Dan Funck;

    level of indigenous microbial communities and their mycotoxins/metabolites on strawberries was examined in a field survey with 4 conventional and 4 organic growers with different production practise and geographic distribution. Culturable bacteria, yeasts and filamentous fungi were isolated...... abundant and diverse group of strawberry microbiota followed by yeasts and filamentous fungi. Grower practice did not seem to correlate with the strawberry microbiota. Limited difference between microbial communities on strawberries from conventional and organic production systems was observed. Mycotoxins...... and identified using both chemotaxonomy (fatty acids and metabolite profiling) and morphological characteristics. Microbial communities on strawberries were complex including potential plant pathogens, opportunistic human pathogens, plant disease biocontrol agents and mycotoxin producers. Bacteria were the most...

  1. 贝母药物资源的植物化学和生物学研究%Phytochemical and biological research of Fritillaria medicinal resources

    Institute of Scientific and Technical Information of China (English)

    郝大程; 顾晓洁; 肖培根; 彭勇

    2013-01-01

    贝母属药用植物含有多种药用化合物,在传统中医药中已应用上千年.近年对贝母药物资源的深入研究导致在多种贝母中发现更多的甾体生物碱、皂苷、萜类、糖苷和许多其它化合物,由此关于贝母的化学分类,分子系统发育和药理研究也日益增多.本文基于作者的贝母药用亲缘研究,评述近年贝母属植物化学、化学分类、分子生物和系统发育研究的进展,及其与贝母药效的关联.通过检索文献总结了贝母研究涉及的多种技术,用基于细胞核和质体DNA标记的系统发育分析推断了川贝,伊贝等复合群内部的相互关系和其与其它中国贝母物种的关系,并明确了中国贝母与国外贝母之间的关系.指出化学分类与分子系统发育结果的不一致并讨论了原因.深入研究更多的贝母物种对于贝母药物资源的可持续利用和寻找新的治疗用化合物十分重要.系统生物学和组学技术将对今后贝母药用化合物研究的深入起到关键作用.%The genus Fritillaria is a botanical source for various pharmaceutically active components,which have been commonly used in traditional Chinese medicine for thousands of years.Increasing interest in Fritillaria medicinal resources has led to additional discoveries of steroidal alkaloids,saponins,terpenoids,glycosides and many other compounds in various Fritillaria species,and to investigations on their chemotaxonomy,molecular phylogeny and pharmacology.In continuation of studies on Fritillaria pharmacophylogeny,the phytochemistry,chemotaxonomy,molecular biology and phylogeny of Fritillaria and their relevance to drug efficacy is reviewed.Literature searching is used to characterize the global scientific effort in the flexible technologies being applied.The interrelationship within Chinese Bei Mu species and between Chinese species,and species distributed outside of China,is clarified by the molecular phylogenetic inferences

  2. FTIR and py-GC-MS spectra of true-fern and seed-fern sphenopterids (Sydney Coalfield, Nova Scotia, Canada, Pennsylvanian)

    Science.gov (United States)

    Zodrow, E.L.; Mastalerz, Maria

    2002-01-01

    Sphenopterid specimens from the Late Pennsylvanian of Sydney Coalfield, Canada, are investigated by FTIR and py-GC-MS techniques as part of an on-going research project into the biochemistry and chemotaxonomy of Pennsylvanian-age pteridophylls. Included in the investigation are samples of the true-fern species Oligocarpia brongniartii and Zeilleria delicatula that are preserved as naturally macerated cuticles (NMC), and the seed-fern Eusphenopteris neuropteroides that is also preserved as a compression/impression. FTIR spectra of NMC seed-fern E. neuropteroides, and fern sphenopterid O. brongniartii are very similar, except that the latter does not have aromatic bands in the 700-900 cm-1 out-of-plane region, py-GC-MS show more aromatic compounds for the seed fern than for the two true-fern sphenopterids. Another difference between seed-fern and true-fern sphenopterids is a lower ratio of CH2 to CH3 in chemically treated specimens (CTC) for the seed fern. These observations suggest slightly higher aromaticity for the seed ferns, perhaps related to some chemotaxonomic differences. Comparison of FTIR and py-GC-MS characteristics of sphenopterids and other plant groups shows that these two techniques have potential to identifying chemotaxonomic signals from Carboniferous pteridophylls in general, although more data are needed to confirm this. ?? 2002 Elsevier Science B.V. All rights reserved.

  3. Ascidian bioresources: common and variant chemical compositions and exploitation strategy - examples of Halocynthia roretzi, Styela plicata, Ascidia sp. and Ciona intestinalis.

    Science.gov (United States)

    Zhao, Yadong; Li, Jiebing

    2016-01-01

    To explore abundant marine ascidian bioresources, four species from two orders have been compared in their chemical compositions. After a universal separation of the animal body into two fractions, all tunics have been found rich in carbohydrate contents, while all inner body tissues are richer in proteins. Cellulose is present almost exclusively in the tunics and more in the order Stolidobranchia, while more sulfated polysaccharides are present in Phlebobranchia species. Almost all proteins are collagens with a high essential amino acid index and high delicious amino acid (DAA) content. All fractions also have high contents of good-quality fatty acids and trace minerals but low toxic element contents, with different sterols and glycosaminoglycans. There are species-specific characteristics observed for vanadium accumulation and sterol structures which are also meaningful for ascidian chemotaxonomy and resource exploitation. It is suggested that in addition to the present utilizations of tunics for cellulose production and of some species' inner body tissues as human food, one should explore all species' inner body tissues as human foods and all tunics as food or animal feed with the contained cellulose as dietary fiber. Collagens, sulfated polysaccharides, glycosaminoglycans, sterols and trace elements could be explored as byproducts for, e.g. pharmaceutical and chemical industries. PMID:27049617

  4. Studies on Chemical Composition, Antimicrobial and Antioxidant Activities of Five Thymus vulgaris L. Essential Oils

    Directory of Open Access Journals (Sweden)

    Emilia Mancini

    2015-07-01

    Full Text Available This study is aimed at assessing the essential oil composition, total phenolic content, antimicrobial and antioxidant activities of Thymus vulgaris collected in five different area of the Campania Region, Southern Italy. The chemical composition of the essential oils was studied by GC-flame ionization detector (FID and GC/MS; the biological activities were evaluated through determination of MIC and minimum bactericidal concentration (MBC and evaluation of antioxidant activity. In total, 134 compounds were identified. The oils were mainly composed of phenolic compounds, and all oils belonged to the chemotype thymol. The antimicrobial activity of the five oils was assayed against ten bacterial strains. The oils showed different inhibitory activity against some Gram-positive pathogens. The total phenol content in the essential oils ranged from 77.6–165.1 mg gallic acid equivalents (GAE/g. The results reported here may help to shed light on the complex chemotaxonomy of the genus Thymus. These oils could be used in many fields as natural preservatives of food and as nutraceuticals.

  5. Raman spectroscopy study of calcium oxalate extracted from cacti stems.

    Science.gov (United States)

    Frausto-Reyes, Claudio; Loza-Cornejo, Sofia; Terrazas, Teresa; Terrazas, Tania; Miranda-Beltrán, María de la Luz; Aparicio-Fernández, Xóchitl; López-Macías, Brenda M; Morales-Martínez, Sandra E; Ortiz-Morales, Martín

    2014-01-01

    To find markers that distinguish the different Cactaceae species, by using near infrared Raman spectroscopy and scanning electron microscopy, we studied the occurrence, in the stem, of solid deposits in five Cactaceae species (Coryphantha clavata, Ferocactus latispinus, Opuntia ficus-indica, O. robusta, and O. strepthacantha) collected from their natural habitats from a region of México. The deposits in the tissues usually occurred as spheroidal aggregates, druses, or prismatic crystals. From the Raman spectra, the crystals were identified either as calcium oxalate monohydrate (CaC2O4·H2O) or calcium oxalate dihydrate (CaC2O4·2H2O). Opuntia species (subfamily Opuntioideae) showed the presence of CaC2O4·H2O, and the deposition of CaC2O4·2H2O was present in C. clavata and F. latispinus (subfamily Cactoideae, Cacteae tribe). As a punctual technique, Raman spectroscopy seems to be a useful tool to identify crystal composition. In addition to allowing the analysis of crystal morphology, this spectroscopic technique can be used to identify Cactaceae species and their chemotaxonomy. PMID:25280368

  6. An introduction to natural products isolation.

    Science.gov (United States)

    Sarker, Satyajit D; Nahar, Lutfun

    2012-01-01

    Natural products, well known for unique chemical diversity and bioactivity, have continued to offer templates for the development of novel scaffolds of drugs. With the remarkable developments in the areas of separation science, spectroscopic techniques, microplate-based ultrasensitive in vitro assays and high-throughput screening (HTS) technologies, natural products research has gained momentum in recent years. The pre-isolation analyses of crude extracts or fraction from different natural matrices, isolation, online detection and dereplication of natural products, studies on chemotaxonomy and biosynthesis, chemical finger-printing, quality control of herbal products, and metabolomic studies have now become much easier than ever before because of the availability of a number of modern sophisticated hyphenated techniques, e.g., GC-MS, LC-PDA, LC-MS, LC-FTIR, LC-NMR, LC-NMR-MS, and CE-MS. This introductory chapter presents a general overview of the processes involved in natural products research, starting from extraction and isolation to elucidation of the structures of purified natural products and their bioactivity. PMID:22367891

  7. Functional groups and elemental analyses of cuticular morphotypes of Cordaites principalis (Germar) Geinitz, Carboniferous Maritimes Basin, Canada

    Science.gov (United States)

    Zodrow, E.L.; Mastalerz, Maria; Orem, W.H.; Simunek, Z.; Bashforth, A.R.

    2000-01-01

    Well-preserved cuticles were isolated from Cordaites principalis (Germar) Geinitz leaf compressions, i.e., foliage from extinct gymnosperm trees Coniferophyta: Order Cordaitales. The specimens were collected from the Sydney. Stellarton and Bay St. George subbasins of the once extensive Carboniferous Maritimes Basin of Atlantic Canada. Fourier transformation of infrared spectra (FTIR) and elemental analyses indicate that the ca. 300-306-million-year-old fossil cuticles share many of the functional groups observed in modern cuticles. The similarities of the functional groups in each of the three cuticular morphotypes studied support the inclusion into a single cordaite-leaf taxon, i.e., C. principalis (Germar), confirming previous morphological investigations. Vitrinite reflectance measurements on coal seams in close proximity to the fossil-bearing sediments reveal that the Bay St. George sample site has the lowest thermal maturity, whereas the sites in Sydney and Stellarton are more mature. IR absorption and elemental analyses of the cordaite compressions corroborate this trend, which suggests that the coalified mesophyll in the leaves follows a maturation path similar to that of vitrinite. Comparison of functional groups of the cordaite cuticles with those from certain pteridosperms previously studied from the Sydney Subbasin shows that in the cordaite cuticles highly conjugated C-O (1632 cm-1) bands dominate over carbonyl stretch that characterizes the pteridosperm cuticles. The differences demonstrate the potential of chemotaxonomy as a valuable tool to assist distinguishing between Carboniferous plant-fossil groups. Published by Elsevier Science B.V.

  8. Metabolic Profiling of Alpine and Ecuadorian Lichens

    Directory of Open Access Journals (Sweden)

    Verena K. Mittermeier

    2015-10-01

    Full Text Available Non-targeted 1H-NMR methods were used to determine metabolite profiles from crude extracts of Alpine and Ecuadorian lichens collected from their natural habitats. In control experiments, the robustness of metabolite detection and quantification was estimated using replicate measurements of Stereocaulon alpinum extracts. The deviations in the overall metabolite fingerprints were low when analyzing S. alpinum collections from different locations or during different annual and seasonal periods. In contrast, metabolite profiles observed from extracts of different Alpine and Ecuadorian lichens clearly revealed genus- and species-specific profiles. The discriminating functions determining cluster formation in principle component analysis (PCA were due to differences in the amounts of genus-specific compounds such as sticticin from the Sticta species, but also in the amounts of ubiquitous metabolites, such as sugar alcohols or trehalose. However, varying concentrations of these metabolites from the same lichen species e.g., due to different environmental conditions appeared of minor relevance for the overall cluster formation in PCA. The metabolic clusters matched phylogenetic analyses using nuclear ribosomal DNA (nrDNA internal transcribed spacer (ITS sequences of lichen mycobionts, as exemplified for the genus Sticta. It can be concluded that NMR-based non-targeted metabolic profiling is a useful tool in the chemo-taxonomy of lichens. The same approach could also facilitate the discovery of novel lichen metabolites on a rapid and systematical basis.

  9. Qualitative and quantitative analyses of alkaloids in Uncaria species by UPLC-ESI-Q-TOF/MS.

    Science.gov (United States)

    Wang, Hai-Bo; Qi, Wen; Zhang, Lin; Yuan, Dan

    2014-01-01

    An ultra performance liquid chromatography (UPLC) coupled with quadrupole time-of-flight mass spectrometry (Q-TOF/MS) method has been optimized and established for the rapid analysis of the alkaloids in 22 samples originating from five Uncaria (U.) species. The accurate mass measurement of all the protonated molecules and subsequent fragment ions offers higher quality structural information for the interpretation of fragmentation pathways of the various groups of alkaloids. A total of 19 oxindole alkaloids, 16 indole alkaloids and 1 flavone were identified by co-chromatography of the sample extract with authentic standards, comparison of the retention time, characteristic molecular ions and fragment ions, or were tentatively identified by MS/MS determination. Moreover, the method was validated for the simultaneous quantification of the 24 components within 10.5 min. The potential chemical markers were identified for classification of the U. species samples by principal component analysis (PCA) and orthogonal partial least squared discriminant analysis (OPLS-DA). The results demonstrate the similarity and differences in alkaloids among the five U. species, which is helpful for the standardization and quality control of the medical materials of the U. Ramulus Cum Unics (URCU). Furthermore, with multivariate statistical analysis, the determined markers are more definite and useful for chemotaxonomy of the U. genus. PMID:25366313

  10. A Contemporary Introduction to Essential Oils: Chemistry, Bioactivity and Prospects for Australian Agriculture

    Directory of Open Access Journals (Sweden)

    Nicholas Sadgrove

    2015-03-01

    Full Text Available This review is a comprehensive introduction to pertinent aspects of the extraction methodology, chemistry, analysis and pharmacology of essential oils, whilst providing a background of general organic chemistry concepts to readers from non-chemistry oriented backgrounds. Furthermore, it describes the historical aspects of essential oil research whilst exploring contentious issues of terminology. This follows with an examination of essential oil producing plants in the Australian context with particular attention to Aboriginal custom use, historical successes and contemporary commercial prospects. Due to the harsh dry environment of the Australian landmass, particularly to the cyclical climatic variation attendant upon repeated glaciation/post-glaciation cycles, the arid regions have evolved a rich assortment of unique endemic essential oil yielding plants. Though some of these aromatic plants (particularly myrtaceous species have given birth to commercially valuable industries, much remains to be discovered. Given the market potential, it is likely that recent discoveries in our laboratory and elsewhere will lead to new product development. This review concludes with an emphasis on the use of chemotaxonomy in selection of commercially viable cultivar chemotypes from the Australian continent. Finally, drawing largely from our own results we propose a list of Australian endemic species with novel commercial potential.

  11. Rapid discrimination and feature extraction of three Chamaecyparis species by static-HS/GC-MS.

    Science.gov (United States)

    Chen, Ying-Ju; Lin, Chun-Ya; Cheng, Sen-Sung; Chang, Shang-Tzen

    2015-01-28

    This study aimed to develop a rapid and accurate analytical method for discriminating three Chamaecyparis species (C. formosensis, C. obtusa, and C. obtusa var. formosana) that could not be easily distinguished by volatile compounds. A total of 23 leaf samples from three species were analyzed by static-headspace (static-HS) coupled with gas chromatography-mass spectrometry (GC-MS). The static-HS procedure, whose experimental parameters were properly optimized, yielded a high Pearson correlation-based similarity between essential oil and VOC composition (r = 0.555-0.999). Thirty-six major constituents were identified; along with the results of cluster analysis (CA), a large variation in contents among the three different species was observed. Principal component analysis (PCA) methods illustrated graphically the relationships between characteristic components and tree species. It was clearly demonstrated that the static-HS-based procedure enhanced greatly the speed of precise analysis of chemical fingerprint in small sample amounts, thus providing a fast and reliable tool for the prediction of constituent characteristics in essential oil, and also offering good opportunities for studying the role of these feature compounds in chemotaxonomy or ecophysiology. PMID:25590241

  12. Ontogeny and environment as determinants of the secondary chemistry of three species of white birch.

    Science.gov (United States)

    Laitinen, Jaana; Julkunen-Tiitto, Riitta; Rousi, Matti; Heinonen, Jaakko; Tahvanainen, Jorma

    2005-10-01

    This study investigates variation in the secondary chemistry of the bark of three closely related, winter-dormant species of white birch (Betula resinifera, B. pendula, and B. platyphylla) at different ontogenetic stages by using different plant parts (top and base). The experimental birches were grown for 4 years in two growing conditions (pot and field) at different nutrient levels. There was considerable species-specific quantitative and qualitative variation in the secondary chemicals in bark, but this was also affected by fertilization and the age of the plant. In general, there was greater chemical diversity in saplings than in seedlings. The study revealed three new components, secoisolariciresinol 9-O-beta-glucopyranoside and two of its derivatives, that have not been reported previously for the bark of white birches. Principal component analysis showed that the species studied had a similar chemical composition at the juvenile stage, but as the plants grew, they became more clearly differentiated, which indicates that the species of older plants can be identified by chemotaxonomy. Evidently, the secondary chemistry of birches is under genetic control, but it is affected by properties of growing conditions and ontogeny. PMID:16195842

  13. 1株湿地稀有放线菌的多相分类鉴定%Polyphasic Taxonomy of a Rare Marine Actinomycetes

    Institute of Scientific and Technical Information of China (English)

    唐树戈; 张柳; 于基成; 刘秋; 齐小辉

    2014-01-01

    Strain S402003 was isolated from marine sediment collected from Yalu River in Dandong, Liaoning Province. Based on the polyphasic studies, including the morphology, physiological and biochemical characteristics, chemotaxonomy and 16S rRNA gene sequence analysis, the results showed that strain S402003 had lipase activity and was capable to reduce nitrate, belongs to the mild salt-tolerant and basophilic bacteria. It was primarily identified as Brevibacterium linens with the similarity 98.834%.%从鸭绿江滨海湿地样品中分离得到1株稀有海洋放线菌S402003,通过形态观察、培养特征、生理生化特征、化学组分鉴定以及16S rRNA基因序列分析对其进行多相分类鉴定。结果表明:该菌株具有脂酶活性,能还原硝酸盐,属于轻度耐盐、嗜碱菌。该菌株属于Brevibacterium linens,相似性为98.834%。

  14. 4'''-Acetylvitexin-2''-O-rhamnoside, isoorientin, orientin, and 8-methoxykaempferol-3-O-glucoside as markers for the differentiation of Crataegus monogyna and Crataegus pentagyna from Crataegus laevigata (Rosaceae).

    Science.gov (United States)

    Prinz, Sonja; Ringl, Alexandra; Huefner, Antje; Pemp, Enne; Kopp, Brigitte

    2007-12-01

    In our chemotaxonomic investigation of pharmaceutically relevant Crataegus species, the qualitative and quantitative flavonoid fingerprint of Crataegus monogyna and C. pentagyna is presented. Six flavonoids were identified as vitexin-2''-O-rhamnoside (1), vitexin (2), isovitexin (3), rutin (4), hyperoside (5), and isoquercitrin (6). Besides the verification of the main compounds isoorientin (7) and orientin (8) in C. pentagyna, further four flavonoids were isolated and identified as isoorientin-2''-O-rhamnoside (9), orientin-2''-O-rhamnoside (10), isovitexin-2''-O-rhamnoside (11), and 8-methoxykaempferol-3-O-glucoside (12) by means of 1D- and 2D-NMR, MS, and UV analyses. Compound 12 was isolated for the first time from C. pentagyna. In contrast to C. pentagyna, C. monogyna samples were predominated by 4'''-acetylvitexin-2''-O-rhamnoside (13), which was missing in C. pentagyna. Hence, 13 represents an interesting compound for chemotaxonomy of C. monogyna, whereas the main flavonoids 7, 8, and 12 could be proposed as markers for C. pentagyna. The absence of 7, 8, 12, and 13 in C. laevigata offers an appropriate tool for additional differentiation from C. monogyna and C. pentagyna, and for sample identification and quality control of the three main Crataegus species used in European phytotherapy. PMID:18081102

  15. Structures, Biological Activities and Phylogenetic Relationships of Terpenoids from Marine Ciliates of the Genus Euplotes

    Directory of Open Access Journals (Sweden)

    Fernando Dini

    2010-07-01

    Full Text Available In the last two decades, large scale axenic cell cultures of the marine species comprising the family Euplotidae have resulted in the isolation of several new classes of terpenoids with unprecedented carbon skeletons including the (i euplotins, highly strained acetylated sesquiterpene hemiacetals; (ii raikovenals, built on the bicyclo[3.2.0]heptane ring system; (iii rarisetenolides and focardins containing an octahydroazulene moiety; and (iv vannusals, with a unique C30 backbone. Their complex structures have been elucidated through a combination of nuclear magnetic resonance spectroscopy, mass spectrometry, molecular mechanics and quantum chemical calculations. Despite the limited number of biosynthetic experiments having been performed, the large diversity of ciliate terpenoids has facilitated the proposal of biosynthetic pathways whereby they are produced from classical linear precursors. Herein, the similarities and differences emerging from the comparison of the classical chemotaxonomy approach based on secondary metabolites, with species phylogenesis based on genetic descriptors (SSU-rDNA, will be discussed. Results on the interesting ecological and biological properties of ciliate terpenoids are also reported.

  16. Characterization of Non-Anthocyanic Flavonoids in Some Hybrid Red Grape Extracts Potentially Interesting for Industrial Uses

    Directory of Open Access Journals (Sweden)

    Mirko De Rosso

    2015-10-01

    Full Text Available Previous studies showed that hybrid grapes often have qualitatively and quantitatively higher polyphenolic contents than the common V. vinifera grape varieties. In general, these compounds are studied for grape chemotaxonomy and for nutraceutical purposes due to their relevant antioxidant activity. Non-anthocyanic flavonoid composition of five red hybrid grape varieties produced by crossing of V. vinifera, V. aestivalis, V. cinerea, V. berlandieri, V. labrusca, V. lincecumii, and V. rupestris were studied by liquid chromatography/high-resolution mass spectrometry. Thirty-one compounds were identified, including methylnaringenin, a tetrahydroxy-dimethoxyflavanone-hexoside, two flavonols (quercetin and a pentahydroxyflavone isomer, 20 glycoside flavonols (four quercetin, two myricetin, two kaempferol, three isorhamnetin, one laricitrin, two syringetin, one kaempferide and two dihydroflavonol derivatives; myricetin-glucoside-glucuronide; myricetin-diglucoside; syringetin-dihexoside, three flavan-3-ols (−-epicatechin, (+-catechin, (−-epicatechin gallate and four proantocyanidins (procyanidin B1, procyanidin B2, procyanidin B3 or B4/B5, procyanidin T2 or T3/T4/C1. Seibel 19881, Seyve Villard 12-347 and Seyve Villard 29-399 were particularly rich in polyphenols. These findings emphasize that these grapes are especially interesting for the production of antioxidant extracts for nutraceutical and pharmaceutical uses.

  17. A Metabolomic Approach to Target Compounds from the Asteraceae Family for Dual COX and LOX Inhibition

    Directory of Open Access Journals (Sweden)

    Daniela A. Chagas-Paula

    2015-07-01

    Full Text Available The application of metabolomics in phytochemical analysis is an innovative strategy for targeting active compounds from a complex plant extract. Species of the Asteraceae family are well-known to exhibit potent anti-inflammatory (AI activity. Dual inhibition of the enzymes COX-1 and 5-LOX is essential for the treatment of several inflammatory diseases, but there is not much investigation reported in the literature for natural products. In this study, 57 leaf extracts (EtOH-H2O 7:3, v/v from different genera and species of the Asteraceae family were tested against COX-1 and 5-LOX while HPLC-ESI-HRMS analysis of the extracts indicated high diversity in their chemical compositions. Using O2PLS-DA (R2 > 0.92; VIP > 1 and positive Y-correlation values, dual inhibition potential of low-abundance metabolites was determined. The O2PLS-DA results exhibited good validation values (cross-validation = Q2 > 0.7 and external validation = P2 > 0.6 with 0% of false positive predictions. The metabolomic approach determined biomarkers for the required biological activity and detected active compounds in the extracts displaying unique mechanisms of action. In addition, the PCA data also gave insights on the chemotaxonomy of the family Asteraceae across its diverse range of genera and tribes.

  18. Croton grewioides Baill. (Euphorbiaceae) Shows Antidiarrheal Activity in Mice

    Science.gov (United States)

    da Silva, Anne Dayse Soares; de Melo e Silva, Karoline; Neto, José Clementino; Costa, Vicente Carlos de Oliveira; Pessôa, Hilzeth de Luna F.; Tavares, Josean Fechine; da Silva, Marcelo Sobral; Cavalcante, Fabiana de Andrade

    2016-01-01

    Based on chemotaxonomy, we decided to investigate the possible antidiarrheal activity in mice of a crude ethanolic extract obtained from aerial parts of Croton grewioides (CG-EtOH). We tested for any possible toxicity in rat erythrocytes and acute toxicity in mice. Antidiarrheal activity was assessed by determining the effect of CG-EtOH on defecation frequency, liquid stool, intestinal motility and intestinal fluid accumulation. CG-EtOH showed no in vitro cytotoxicity and was not orally lethal. In contrast, the extract given intraperitoneally (at 2000 mg/kg) was lethal, but only in females. CG-EtOH produced a significant and equipotent antidiarrheal activity, both in defecation frequency (ED50 = 106.0 ± 8.1 mg/kg) and liquid stools (ED50 = 105.0 ± 9.2 mg/kg). However, CG-EtOH (125 mg/kg) decreased intestinal motility by only 22.7% ± 4.4%. Moreover, extract markedly inhibited the castor oil-induced intestinal contents (ED50 = 34.6 ± 5.4 mg/kg). We thus conclude that CG-EtOH is not orally lethal and contains active principles with antidiarrheal activity, and this effect seems to involve mostly changes in intestinal secretion. SUMMARY CG-EtOH showed no in vitro cytotoxicity and was not orally lethal. In contrast, the extract given intraperitoneally (at 2000 mg/kg) was lethal, but only in females.CG-EtOH probably contains active metabolites with antidiarrheal activity.CG-EtOH reduced the frequency and number of liquid stools.Metabolites presents in the CG-EtOH act mainly by reducing intestinal fluid and, to a lesser extent, reducing intestinal motility. Abbreviations Used: CG-EtOH: crude ethanolic extract obtained from the aerial parts of C. grewioides; WHO: World Health Organization; ED50: dose of a drug that produces 50% of its maximum effect; Emax: maximum effect PMID:27365990

  19. A comparison of random forest and its Gini importance with standard chemometric methods for the feature selection and classification of spectral data

    Directory of Open Access Journals (Sweden)

    Himmelreich Uwe

    2009-07-01

    Full Text Available Abstract Background Regularized regression methods such as principal component or partial least squares regression perform well in learning tasks on high dimensional spectral data, but cannot explicitly eliminate irrelevant features. The random forest classifier with its associated Gini feature importance, on the other hand, allows for an explicit feature elimination, but may not be optimally adapted to spectral data due to the topology of its constituent classification trees which are based on orthogonal splits in feature space. Results We propose to combine the best of both approaches, and evaluated the joint use of a feature selection based on a recursive feature elimination using the Gini importance of random forests' together with regularized classification methods on spectral data sets from medical diagnostics, chemotaxonomy, biomedical analytics, food science, and synthetically modified spectral data. Here, a feature selection using the Gini feature importance with a regularized classification by discriminant partial least squares regression performed as well as or better than a filtering according to different univariate statistical tests, or using regression coefficients in a backward feature elimination. It outperformed the direct application of the random forest classifier, or the direct application of the regularized classifiers on the full set of features. Conclusion The Gini importance of the random forest provided superior means for measuring feature relevance on spectral data, but – on an optimal subset of features – the regularized classifiers might be preferable over the random forest classifier, in spite of their limitation to model linear dependencies only. A feature selection based on Gini importance, however, may precede a regularized linear classification to identify this optimal subset of features, and to earn a double benefit of both dimensionality reduction and the elimination of noise from the classification task.

  20. A polyphasic approach for the characterization of endophytic Alternaria strains isolated from grapevines.

    Science.gov (United States)

    Polizzotto, Rachele; Andersen, Birgitte; Martini, Marta; Grisan, Simone; Assante, Gemma; Musetti, Rita

    2012-01-01

    A polyphasic approach was set up and applied to characterize 20 fungal endophytes belonging to the genus Alternaria, recovered from grapevine in different Italian regions. Morphological, microscopical, molecular and chemical investigations were performed and the obtained results were combined in a pooled cluster analysis. Following morphological analyses, all strains were grouped according to their three-dimensional sporulation pattern on PCA and to the colony characteristics on different substrates. After DNA extraction, all strains were analyzed by RAPD-PCR and the resulting profiles were subjected to cluster analysis. The metabolites extracted from the 20 Alternaria endophytes were analyzed by a HPLC and the resulting metabolite profiles were subjected to multivariate statistic analyses. In comparison with reference 'small-spored' Alternaria species, the 20 strains were segregated into two morphological groups: one belonging to the A. arborescens species-group and a second to the A. tenuissima species-group. RAPD analysis also showed that grapevine endophytes belonged to either the A. arborescens or the A. tenuissima species-group and that they were molecularly distinct from strains belonging to A. alternata. Chemotaxonomy gave the same grouping: the grapevine endophytic strains belong to A. arborescens or A. tenuissima species-groups producing known metabolites typical of these species-groups. Interestingly, the 20 grapevine endophytes were able to produce also a number of unknown metabolites, whose characterization could be useful for a more precise segregation of the two species-groups. The results show how complementary morphological, molecular and chemical data can clarify relationships among endophyte species-groups of low morphological divergence. PMID:22123507

  1. Wood colors and their coloring matters: a review.

    Science.gov (United States)

    Yazaki, Yoshikazu

    2015-03-01

    A number of colored specialty woods, such as ebony, rosewood, mahogany and amboyna, and commercially important woods, such as morus, logwood, Brazilwood, Japanese yellowwood, blackwood, kwila, red beech and myrtle beech, exhibit a wide range of colors from black, violet, dark red, reddish brown, to pale yellow. These colors are not only due to colored pigments contained in extractives from those woods but also to insoluble polymers. Wood and bark from many species of both hardwood and softwood trees contain many types of flavonoid compounds. Research on flavonoids has been conducted mainly from two points of view. The first is chemotaxonomy with flavonoid compounds as taxonomic markers, and the second relates to the utilization of woods for pulp and paper and the use of tannins from bark for wood adhesives. Most chemotaxonomic studies have been conducted on flavonoids in the extracts from softwoods such as Podocarpus, Pinus, Pseudotsuga, Larix, Taxus, Libocedrus, Tsuja, Taxodium, Sequoia, Cedrus, Tsuga, Abies and Picea. Hardwood chemotaxonomic studies include those on Prunus and Eucalyptus species. Studies on flavonoids in pulp and paper production were conducted on Eucalyptus woods in Australia and woods from Douglas fir in the USA and larch in Japan. Flavonoids as tannin resources from black wattle tannin and quebracho tannin have been used commercially as wood adhesives. Flavonoids in the bark from radiata pine and southern pine, from western and eastern hemlock, southern red oak and Quercus dentata are also discussed. In addition, the distribution of flavonoids among tree species is described, as is the first isolation of rare procyanidin glycosides in nature. PMID:25924540

  2. Terpenoid variations within and among half-sibling avocado trees, Persea americana Mill. (Lauraceae).

    Science.gov (United States)

    Niogret, Jerome; Epsky, Nancy D; Schnell, Raymond J; Boza, Edward J; Kendra, Paul E; Heath, Robert R

    2013-01-01

    Chemical analyses were conducted to determine the qualitative and quantitative differences in monoterpenes and sesquiterpenes in plant material from avocado trees, Persea americana Mill. (Lauraceae). The initial study analyzed plant material sampled from the trunk to the leaves through different branch diameters to quantify proximo-distal spatial differences within a tree. All trees were seedlings initiated from a single maternal tree. Two-way analysis of variance was conducted on 34 chemicals that comprised at least 3% of the total chemical content of at least one tree and/or location within a tree. There were significant interactions between genotype and location sampled for most chemicals. Parentage analysis using microsatellite molecular markers (SSR's) determined that the four trees had three fathers and that they represented two full-siblings and two half-sibling trees. Descriptive discriminant analysis found that both genotype and location within a tree could be separated based on chemical content, and that the chemical content from full-siblings tended to be more similar than chemical content from half-siblings. To further explore the relationship between genetic background and chemical content, samples were analyzed from leaf material from 20 trees that included two sets of full-sibling seedling trees, the maternal tree and the surviving paternal tree. Descriptive discriminant analysis found good separation between the two full-sibling groups, and that the separation was associated with chemistry of the parental trees. Six groups of chemicals were identified that explained the variation among the trees. We discuss the results in relation to the discrimination process used by wood-boring insects for site-selection on host trees, for tree selection among potential host trees, and the potential use of terpenoid chemical content in chemotaxonomy of avocado trees. PMID:24039994

  3. Classification of marine diatoms using pigment ratio suites

    Institute of Scientific and Technical Information of China (English)

    YAO Peng; YU Zhigang; DENG Chunmei; LIU Shuxia; ZHEN Yu

    2011-01-01

    Diatoms are widely distributed in many temperate areas and some species frequently form extensive blooms in spring.Hence,monitoring the variations of specific genera or species of diatoms is necessary for studying phytoplankton population dynamics in marine ecosystems.To test whether pigment ratios can be used to identify diatoms at a below-class taxonomic level,we analyzed 14 species/strains of diatoms isolated from Chinese seas using high performance liquid chromatography (HPLC).We normalized all pigment concentrations to total chlorophyll a to calculate the ratios of pigment to chlorophyll a,and calculated the ratios between accessory pigments (or pigment sums).Cluster analysis indicated that these diatoms could be classified into four clusters in terms of three accessory pigment ratios:chlorophyll c2:chlorophyll c1,fucoxanthin:total chlorophyll c and diadinoxanthin:diatoxanthin.The classification results matched well with those of biological taxonomy.To test the stability of the classification,pigment data from one species,cultured under different light intensities,and five new species/strains were calculated and used for discriminant analysis.The results show that the classification of diatom species using pigment ratio suites was stable for the variations of pigment ratios of species cultured in different light intensities.The introduction of new species,however,may confuse the classification within the current scheme.Classification of marine diatoms using pigment ratio suites is potentially valuable for the fine chemotaxonomy of phytoplankton at taxonomic levels below class and would advance studies on phytoplankton population dynamics and marine ecology.

  4. Terpenoid variations within and among half-sibling avocado trees, Persea americana Mill. (Lauraceae.

    Directory of Open Access Journals (Sweden)

    Jerome Niogret

    Full Text Available Chemical analyses were conducted to determine the qualitative and quantitative differences in monoterpenes and sesquiterpenes in plant material from avocado trees, Persea americana Mill. (Lauraceae. The initial study analyzed plant material sampled from the trunk to the leaves through different branch diameters to quantify proximo-distal spatial differences within a tree. All trees were seedlings initiated from a single maternal tree. Two-way analysis of variance was conducted on 34 chemicals that comprised at least 3% of the total chemical content of at least one tree and/or location within a tree. There were significant interactions between genotype and location sampled for most chemicals. Parentage analysis using microsatellite molecular markers (SSR's determined that the four trees had three fathers and that they represented two full-siblings and two half-sibling trees. Descriptive discriminant analysis found that both genotype and location within a tree could be separated based on chemical content, and that the chemical content from full-siblings tended to be more similar than chemical content from half-siblings. To further explore the relationship between genetic background and chemical content, samples were analyzed from leaf material from 20 trees that included two sets of full-sibling seedling trees, the maternal tree and the surviving paternal tree. Descriptive discriminant analysis found good separation between the two full-sibling groups, and that the separation was associated with chemistry of the parental trees. Six groups of chemicals were identified that explained the variation among the trees. We discuss the results in relation to the discrimination process used by wood-boring insects for site-selection on host trees, for tree selection among potential host trees, and the potential use of terpenoid chemical content in chemotaxonomy of avocado trees.

  5. 乌头属药物资源的化学和生物学研究进展%Recent advances in the chemical and biological studies of Aconitum pharmaceutical resources

    Institute of Scientific and Technical Information of China (English)

    郝大程; 顾晓洁; 肖培根; 许利嘉; 彭勇

    2013-01-01

    毛莨科乌头属药用植物含有二萜生物碱、多糖、黄酮类等药物活性成份,促进了对其化学分类学、分子分类学和药理学的研究.作为药用植物亲缘学的继续深入研究,本文综述乌头属的植物化学、化学分类、分子生物学和系统发育等方面的近期进展及其与乌头药效和毒性的关联.近年在多种乌头植物中发现了更多二萜生物碱,以C19:Ⅲ,aconitine类型最多.综述了近年发现的乌头生物碱和提取物,以及乌头多糖和其它成分的生物活性.国产乌头亚属中乌头组基于形态学的11系分类未得到化学分类和分子系统发育研究的支持.基于细胞核和叶绿体DNA序列的分子系统树将形态极相近的9系分为两群,一为甘青乌头系,圆叶乌头系,保山乌头系和短柄乌头系;另一为乌头系,兴安乌头系,显柱乌头系,蔓乌头系和准噶尔乌头系,化学分类数据支持此分群.为了乌头资源的可持续利用和发现高效低毒的新化合物,有必要将近年涌现的新技术用于乌头研究.系统生物学和组学技术将在促进乌头生物活性化合物研究中发挥关键作用.%Many herbal medicines have so far been utilized for the treatment of various ailments since the beginning of Chinese civilization.Aconitum is a botanical source for various pharmaceutically active components,which has been commonly used in traditional Chinese medicine for thousands of years.Increasing interest in Aconitum pharmaceutical resources has led to further discoveries of diterpenoid alkaloids,polysaccharides,flavonoids and many other compounds in various Aconitum species,and to investigations on their chemotaxonomy,molecular phylogeny and pharmacology.In continuation with our studies on Aconitum pharmacophylogeny,here we review the phytochemistry,chemotaxonomy,molecular biology and phylogeny of Aconitum and their relevance to therapeutic efficacy and toxicity.An exhaustive literature survey is

  6. Fatty acid, lipid class, and phospholipid molecular species composition of the soft coral Xenia sp. (Nha Trang Bay, the South China Sea, Vietnam).

    Science.gov (United States)

    Imbs, Andrey B; Dang, Ly P T; Rybin, Viacheslav G; Svetashev, Vasily I

    2015-06-01

    The soft corals of the genus Xenia are common for Indo-Pacific reef ecosystems. Lipid class, fatty acid (FA), phospho- and phosphonolipid molecular species compositions were identified for the first time in the soft coral Xenia sp. from Vietnam. Total lipids consisted predominantly of waxes, monoalkyl diacylglycerols, triacylglycerols, sterols, and polar lipids (21.4, 7.7, 14.2, 10.5, and 36.7 %, respectively). Sesquiterpene alcohol, valerenenol, was found. Acids 16:0, 18:3n-6, 20:4n-6, and 20:5n-3 dominated in total FA. The markers of zooxanthellae (18:4n-3 and 18:5n-3) and octocorals (24:5n-6 and 24:6n-3) were detected. Acids 18:5n-3, 20:4n-6, 22:4n-6, and 24:5n-6 concentrated in FA of polar lipids, whereas 14:0, 16:0, 16:1n-7, 18:2n-6, and 18:3n-6 were the major FA of neutral lipids. ChoGpl, EtnGpl, SerGpl, CAEP, PtdIns, and lyso ChoGpl constituted 39.5, 20.8, 20.5, 9.7, 4.3, and 5.3 %, respectively, of the sum of phospho- and phosphonolipids. Thirty-two molecular species of phospholipids and ceramide aminoethylphosphonate (CAEP) were determined by high resolution tandem mass spectrometry. Lyso 18:0e PakCho (4.1 %), 18:0e/20:4 PakCho (20.5 %), 18:1e/20:4 PlsEtn (18.0 %), 18:0e/24:5 PakSer (14.0 %), and 16:0 CAEP (9.6 %) were the major molecular species. EtnGpl and PtdIns mainly consisted of alkenyl acyl and diacyl forms, respectively. Alkyl acyl forms predominated in ChoGpl and SerGpl. Acid 24:5n-6 was a principal FA in SerGpl, whereas 20:4n-6 was more abundant in ChoGpl and EtnGpl. PtdIns contained various C20-24 PUFA. In the context of chemotaxonomy of corals, Xenia sp. has the lipid composition typical for soft corals and the FA profile similar to that of alcyonarians with the high level of 18:3n-6. PMID:25916238

  7. Seasonality, phytoplankton succession and the biogeochemical impacts of an autumn storm in the northeast Atlantic Ocean

    Science.gov (United States)

    Painter, Stuart C.; Finlay, Madelaine; Hemsley, Victoria S.; Martin, Adrian P.

    2016-03-01

    Phytoplankton chemotaxonomic distributions are examined in conjunction with taxon specific particulate biomass concentrations and phytoplankton abundances to investigate the biogeochemical consequences of the passage of an autumn storm in the northeast Atlantic Ocean. Chemotaxonomy indicated that the phytoplankton community was dominated by nanoplankton (2-20 μm), which on average represented 75 ± 8% of the community. Microplankton (20-200 μm) and picoplankton (chlorophyll-a (TCHLa = CHLa + Divinyl CHLa) concentrations ranged from 22 to 677 ng L-1, with DvCHLa making minor contributions of between chlorophyll concentrations. Picoplankton were rapid initial respondents to the changing conditions with pigment markers showing an abrupt 4-fold increase in proportion but this increase was not sustained post-storm. 19‧-HEX, a chemotaxonomic marker for prymnesiophytes, was the dominant accessory pigment pre- and post-storm with concentrations of 48-435 ng L-1, and represented 44% of total carotenoid concentrations. Accompanying scanning electron microscopy results support the pigment-based analysis but also provide detailed insight into the nano- and microplankton communities, which proved to be highly variable between pre-storm and post-storm sampling periods. Nanoplankton remained the dominant size class pre- and post-storm but the microplankton proportion peaked during the period of maximum nutrient and chlorophyll concentrations. Classic descriptions of autumn blooms resulting from storm driven eutrophication events promoting phytoplankton growth in surface waters should be tempered with greater understanding of the role of storm driven vertical reorganization of the water column and of resident phytoplankton communities. Crucially, in this case we observed no change in integrated chlorophyll, particulate organic carbon or biogenic silica concentrations despite also observing a ∼50% increase in surface chlorophyll concentrations which indicated that the surface

  8. KAJIAN TERHADAP PROSPEK PENGEMBANGAN BAHAN BIOAKTIF BUAH MAHKOTA DEWA (P. Macrocarpa SEBAGAI KANDIDAT NEW CHEMICAL ENTITY (NCE UNTUK PENGOBATAN KANKER (SITOSTATIKA

    Directory of Open Access Journals (Sweden)

    Vivi Lisdawati

    2012-11-01

    Full Text Available Abstract. In the last few years there are tendency for cancer study to develop in discovery of new chemical entity (NCE for new drugs. The needed of NCE based on reality that cancer therapy reaches a resistant level very fast. By developing NCE, multiply cancer drugs can be used at one therapy and be implemented as a solution to inhibit a resistant level and very useful in recovery time. Natural products are the most important sources of NCE and could be used from plants, animals or minerals. Most of the natural products used in Indonesia are recognized from plants. Plants secondary metabolites show promise for cancer chemoprevention, which has been defined as the use of non cytotoxic nutrient or pharmacological agents to enhance intrinsic physiological mechanism that protect the organism against mutant clones of malignant cells. The study of plants secondary metabolites is nowadays moved from improvement of the empiric activity to meet the relationship between the structures of chemical compounds to its pharmacology activities. Development of study on plants in Indonesia is also pointed on discovery of NCE for new drugs of cancer and the cellular cytotoxic mechanism of the biological activity. Extracts from the fruit of P. macrocarpa is one of the sources for NCE of cancer drug in Indonesia. Some isolates already isolated from the extracts, i.e. lignan compound Ci9H2o06: 5-[4(4-Methoxy-phenyl-tetrahydrofurof3,4-cJfuran-l-yl]-benzene-1,2,3-triol and benzophenon compound: 4', 6-dihiroksi-4-metoksibenzofenon-2-0-glukoside. Using chemotaxonomy Dahlgren and Conqruist system approached indicate that these compounds have anti proliferation and pro apoptotic as their cytotoxic activities. The pharmacology activities from the fruit extracts also have been studied. For cytotoxic activities, the fruit extracts showed ICSo values from 5 to 7.71. jug/ml for leukemia LI 210 cell line; and IC50 values 196.74 jug/ml for HeLa cell line. The extracts also showed

  9. Identification of potentially safe promising fungal cell factories for the production of polyketide natural food colorants using chemotaxonomic rationale

    Directory of Open Access Journals (Sweden)

    Frisvad Jens C

    2009-04-01

    Full Text Available Abstract Background Colorants derived from natural sources look set to overtake synthetic colorants in market value as manufacturers continue to meet the rising demand for clean label ingredients – particularly in food applications. Many ascomycetous fungi naturally synthesize and secrete pigments and thus provide readily available additional and/or alternative sources of natural colorants that are independent of agro-climatic conditions. With an appropriately selected fungus; using in particular chemotaxonomy as a guide, the fungal natural colorants could be produced in high yields by using the optimized cultivation technology. This approach could secure efficient production of pigments avoiding use of genetic manipulation. Results Polyketide pigment producing ascomycetous fungi were evaluated for their potential as production organisms based on a priori knowledge on species-specific pigment and potential mycotoxin production and BioSafety level (BSL classification. Based on taxonomic knowledge, we pre-selected ascomycetous fungi belonging to Penicillium subgenus Biverticillium that produced yellow, orange or red pigments while deselecting Penicillium marneffei; a well known human pathogen in addition to other mycotoxigenic fungi belonging to the same group. We identified 10 strains belonging to 4 species; viz. P. purpurogenum, P. aculeatum, P. funiculosum, and P. pinophilum as potential pigment producers that produced Monascus-like pigments but no known mycotoxins. The selection/deselection protocol was illustrated in the pigment extracts of P. aculeatum IBT 14259 and P. crateriforme IBT 5015 analysed by HPLC-DAD-MS. In addition, extracellular pigment producing ability of some of the potential pigment producers was evaluated in liquid media with a solid support and N-glutarylmonascorubramine was discovered in the partially purified pigment extract of P. purpurogenum IBT 11181 and IBT 3645. Conclusion The present work brought out that the use

  10. The volatile compound BinBase mass spectral database

    Directory of Open Access Journals (Sweden)

    Barupal Dinesh K

    2011-08-01

    ://vocbinbase.fiehnlab.ucdavis.edu. Conclusions The BinBase database algorithms have been successfully modified to allow for tracking and identification of volatile compounds in complex mixtures. The database is capable of annotating large datasets (hundreds to thousands of samples and is well-suited for between-study comparisons such as chemotaxonomy investigations. This novel volatile compound database tool is applicable to research fields spanning chemical ecology to human health. The BinBase source code is freely available at http://binbase.sourceforge.net/ under the LGPL 2.0 license agreement.

  11. A study of the fatty acid and tocochromanol patterns of some Fabaceae (Leguminosae plants from Turkey I

    Directory of Open Access Journals (Sweden)

    Sahim, Ahmet

    2004-12-01

    Full Text Available In this study, the fatty acid, tocopherol, tocotrienol and plastochromanol-8 contents of some selected Fabaceae (Leguminosae species belonging to different genera (Colutea, Vicia, Lathyrus, Gonocytisus, Lupinus, Hedysarum, Onobrychis, Trigonella from Turkey were determined by using GLC and HPLC techniques. Some of the studied species are endemic to Turkey. The seed oils of different Leguminous taxa contained linoleic, oleic and linolenic acids as their major components. The ratios of these fatty acids in the Leguminous genera were found to be highly variable. Palmitic and stearic acids are the major saturated fatty acids in the seed oils. Vicia and Onobrychis patterns showed high similarity in means of qualitative fatty acid concentration. The tocopherol and tocochromanol patterns of the seed oils were also found to be highly variable among the genera investigated here. The total tocopherols was higher than the total tocotrienols. Alpha and gamma tocopherols were also the highest tocopherols present in the whole species. Beta, gamma and delta-tocotrienols were not found in most of the studied leguminous patterns. The results are discussed in view of renewable sources and chemotaxonomy.En este estudio, los contenidos en ácidos grasos, tocoferoles, tocotrienoles y plastocromanol-8 de algunas especies seleccionadas de Fabaceae (Leguminosae, pertenecientes a diferentes géneros (Colutea, Vicia, Lathyrus, Gonocytisus, Lupinus, Hedysarum, Onobrychis, Trigonella de Turquía, fueron determinadas usando técnicas de GLC y HPLC. Algunas de las especies estudiadas son endémicas de Turquía. Los aceites de semillas de los diferentes taxones de leguminosas contenían los ácidos linoleico, oleico y linolénico como principales componentes. Las proporciones de estos ácidos grasos fueron muy variables entre los géneros de leguminosas. Los ácidos palmítico y esteárico son los principales ácidos grasos saturados en los aceites de semillas. Los patrones

  12. A survey of the summer coccolithophore community in the western Barents Sea

    Science.gov (United States)

    Giraudeau, Jacques; Hulot, Vivien; Hanquiez, Vincent; Devaux, Ludovic; Howa, Hélène; Garlan, Thierry

    2016-06-01

    The Barents Sea is particularly vulnerable to large-scale hydro-climatic changes associated with the polar amplification of climate change. Key oceanographical variables in this region are the seasonal development of sea-ice and the location and strength of physico-chemical gradients in the surface and subsurface water layers induced by the convergence of Arctic- and Atlantic-derived water masses. Remote sensing imagery have highlighted the increasing success of calcifying haptophytes (coccolithophores) in the summer phytoplankton production of the Barents Sea over the last 20 years, as a response to an overall larger contribution of Atlantic waters to surface and sub-surface waters, as well as to enhanced sea-ice melt-induced summer stratification of the photic layer. The present study provides a first thorough description of coccolithophore standing stocks and diversity over the shelf and slope of the western Barents Sea from two sets of surface and water column samples collected during August-September 2014 from northern Norway to southern Svalbard. The abundance and composition of coccolithophore cells and skeletal remains (coccoliths) are discussed in view of the physical-chemical-biological status of the surface waters and water column based on in-situ (temperature, salinity, fluorescence) and shore-based (microscope enumerations, chemotaxonomy) measurements, as well as satellite-derived data (Chl a and particulate inorganic carbon contents). The coccolithophore population is characterized by a low species diversity and the overwhelming dominance of Emiliania huxleyi. Coccolithophores are abundant both within the well stratified, Norwegian coastal water - influenced shallow mixed layer off northern Norway, as well as within well-mixed cool Atlantic water in close vicinity of the Polar Front. Bloom concentrations with standing stocks larger than 4 million cells/l are recorded in the latter area north of 75°N. Our limited set of chemotaxonomic data suggests

  13. Composición química de los aceites esenciales de las hojas de Helicteres guazumifolia (Sterculiaceae, Piper tuberculatum (Piperaceae, Scoparia dulcis (Arecaceae y Solanum subinerme (Solanaceae, recolectadas en Sucre, Venezuela

    Directory of Open Access Journals (Sweden)

    Gabriel Ordaz

    2011-06-01

    metabolites in some plant species in order to contribute to their chemotaxonomy. Leaves from Helicteres guazumifolia, Piper tuberculatum, Scoparia dulcis and Solanum subinerme were collected and their essential oils were obtained by means of hydro-distillation. The oil fraction was analyzed and identified by GC/MS. The extraction yields were of 0.004, 0.032, 0.016 and 0.005%, and the oil constituents of 88.00, 89.80, 87.50 and 89.47%, respectively. The principal oils found were: non-terpenoids volatile secondary metabolites (30.28% in H. guazumifolia; sesquiterpenoids (20.82 and 26.09% and oxigen derivated (52.19 and 25.18% in P. tuberculatum and S. dulcis; and oxigen diterpenoids (39.67% in S. subinerme. The diisobuthylphtalate (13.11 % in H. guazumifolia, (--spathulenol (11.37% in P. tuberculatum and trans-phytol (8.29 and 36.00% in S. dulcis and S. subinerme, were the principal constituents in their respective essential oils. The diisooctylphtalate were the essential oil common to all species, but the volatile compounds such as trans-pinane, L-linalool, β-ionone, isophytol, neophytadiene, trans-phytol, dibutylphtalate and methyl hexadecanoate, were only detected in three of these essences. This suggests that these plants may require similar secondary metabolites for their ecological interactions, possibly due to common environmental factors. Rev. Biol. Trop. 59 (2: 585-595. Epub 2011 June 01.

  14. Actividad acaricida de extractos de lauráceas sobre los ácaros intradomiciliarios Dermatophagoides farinae y Blomia tropicalis Acaricide activity of Lauraceae extracts agaisnt domiciliary mites Dermatophagoides farinae and Blomia tropicalis

    Directory of Open Access Journals (Sweden)

    Luis Enrique Cuca-Suárez

    2012-12-01

    were studied for their acaricide activity against Dermatophagoides farinae and Blomia tropicalis, considered public health problems at domiciliary level. Objective: to evaluate acaricide activity of ethanol extracts from Lauraceae plants on domiciliary mites Dermatophagoides farinae and Blomia tropicalis as well as to characterize ethanol-soluble extracts by preliminary phytochemical assay. Methods: in vitro acaricide activity of extracts from seven plants belonging to the Lauraceae family, harvested in different regions of Colombia, was assessed on individual adults through direct contact test and fumigant action. Each plant extract was tested for chemical characterization by means of coloration and precipitation tests. Results: in direct contact bioassay, the leaf extract from Persea caerulea eliminated 100 % of Dermatophagoides farinae. In fumigant action bioassay, the leaf extract of Persea caerulea eliminated 100 % Dermatophagoides farinae and 83.37 % of Blomia tropicalis (after 120 minutes exposure at 0.1 mg/mL. The preliminary phytochemical testing identified the possible presence of metabolites according to the Lauraceae chemotaxonomy. Conclusions: obtained results indicated that Lauraceae plants could be catalogued as a source of potential biocontrol agents against specific domiciliary mites Dermatophagoides farinae and Blomia tropicalis.

  15. Method development for mass spectrometry based molecular characterization of fossil fuels and biological samples

    Science.gov (United States)

    Mahat, Rajendra K.

    In an analytical (chemical) method development process, the sample preparation step usually determines the throughput and overall success of the analysis. Both targeted and non-targeted methods were developed for the mass spectrometry (MS) based analyses of fossil fuels (coal) and lipidomic analyses of a unique micro-organism, Gemmata obscuriglobus. In the non-targeted coal analysis using GC-MS, a microwave-assisted pressurized sample extraction method was compared with the traditional extraction method, such as Soxhlet. On the other hand, methods were developed to establish a comprehensive lipidomic profile and to confirm the presence of endotoxins (a.k.a. lipopolysaccharides, LPS) in Gemmata.. The performance of pressurized heating techniques employing hot-air oven and microwave irradiation were compared with that of Soxhlet method in terms of percentage extraction efficiency and extracted analyte profiles (via GC-MS). Sub-bituminous (Powder River Range, Wyoming, USA) and bituminous (Fruitland formation, Colorado, USA) coal samples were tested. Overall 30-40% higher extraction efficiencies (by weight) were obtained with a 4 hour hot-air oven and a 20 min microwave-heating extraction in a pressurized container when compared to a 72 hour Soxhlet extraction. The pressurized methods are 25 times more economic in terms of solvent/sample amount used and are 216 times faster in term of time invested for the extraction process. Additionally, same sets of compounds were identified by GC-MS for all the extraction methods used: n-alkanes and diterpanes in the sub-bituminous sample, and n-alkanes and alkyl aromatic compounds in the bituminous coal sample. G. obscuriglobus, a nucleated bacterium, is a micro-organism of high significances from evolutionary, cell and environmental biology standpoints. Although lipidomics is an essential tool in microbiological systematics and chemotaxonomy, complete lipid profile of this bacterium is still lacking. In addition, the presence of